Query 010562
Match_columns 507
No_of_seqs 233 out of 998
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 01:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02759 Formate--tetrahydrofo 100.0 2E-236 5E-241 1842.9 43.8 496 4-499 4-499 (637)
2 PTZ00386 formyl tetrahydrofola 100.0 7E-231 1E-235 1798.5 41.8 481 7-499 6-487 (625)
3 PRK13507 formate--tetrahydrofo 100.0 2E-218 3E-223 1698.1 38.5 445 11-499 2-449 (587)
4 KOG4230 C1-tetrahydrofolate sy 100.0 4E-214 9E-219 1662.8 36.2 491 7-499 303-799 (935)
5 PF01268 FTHFS: Formate--tetra 100.0 5E-214 1E-218 1664.9 22.8 419 16-499 1-419 (557)
6 COG2759 MIS1 Formyltetrahydrof 100.0 2E-210 5E-215 1604.2 33.5 417 18-499 1-417 (554)
7 PRK13506 formate--tetrahydrofo 100.0 9E-208 2E-212 1618.3 38.2 441 16-499 1-442 (578)
8 PRK13505 formate--tetrahydrofo 100.0 2E-199 3E-204 1556.3 37.9 420 15-499 1-420 (557)
9 cd00477 FTHFS Formyltetrahydro 100.0 2E-198 5E-203 1535.9 34.4 403 32-499 1-404 (524)
10 TIGR03029 EpsG chain length de 97.1 0.00045 9.8E-09 66.8 3.8 51 67-121 101-154 (274)
11 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.026 5.6E-07 43.9 9.2 26 83-110 9-34 (99)
12 TIGR01007 eps_fam capsular exo 96.4 0.0036 7.8E-08 57.9 4.3 52 67-122 15-69 (204)
13 CHL00175 minD septum-site dete 96.4 0.0041 8.9E-08 60.4 4.8 55 64-122 10-67 (281)
14 PRK11519 tyrosine kinase; Prov 96.3 0.0043 9.4E-08 69.1 4.8 52 67-122 524-578 (719)
15 TIGR01005 eps_transp_fam exopo 96.0 0.0055 1.2E-07 68.0 3.8 51 67-121 544-597 (754)
16 TIGR03018 pepcterm_TyrKin exop 96.0 0.0098 2.1E-07 55.8 4.8 52 67-121 33-87 (207)
17 PRK13705 plasmid-partitioning 95.9 0.0096 2.1E-07 62.1 4.8 91 28-119 39-155 (388)
18 PRK09841 cryptic autophosphory 95.8 0.0087 1.9E-07 66.8 4.3 51 67-121 529-582 (726)
19 PHA02519 plasmid partition pro 95.6 0.019 4.2E-07 60.1 5.8 90 29-120 40-156 (387)
20 TIGR03453 partition_RepA plasm 95.5 0.021 4.5E-07 58.9 5.3 91 29-120 34-153 (387)
21 TIGR01968 minD_bact septum sit 95.5 0.017 3.7E-07 54.3 4.3 48 69-120 1-51 (261)
22 cd02033 BchX Chlorophyllide re 95.5 0.02 4.2E-07 59.2 5.1 52 67-123 29-83 (329)
23 TIGR00347 bioD dethiobiotin sy 95.2 0.014 3E-07 52.3 2.7 35 77-114 2-36 (166)
24 COG0489 Mrp ATPases involved i 95.0 0.018 3.9E-07 57.3 3.2 52 68-123 56-110 (265)
25 PRK13869 plasmid-partitioning 94.9 0.039 8.4E-07 58.0 5.5 46 70-119 122-169 (405)
26 COG2805 PilT Tfp pilus assembl 94.5 0.043 9.3E-07 57.5 4.3 45 62-112 119-163 (353)
27 cd00550 ArsA_ATPase Oxyanion-t 94.3 0.033 7.2E-07 54.5 3.1 48 70-122 1-50 (254)
28 cd02037 MRP-like MRP (Multiple 94.2 0.049 1.1E-06 49.2 3.7 35 77-112 4-38 (169)
29 cd02036 MinD Bacterial cell di 93.8 0.056 1.2E-06 47.8 3.2 41 77-118 4-47 (179)
30 cd02117 NifH_like This family 93.8 0.067 1.4E-06 50.2 3.8 39 71-114 2-40 (212)
31 PRK13185 chlL protochlorophyll 93.6 0.074 1.6E-06 51.4 4.0 39 69-112 2-40 (270)
32 PF02367 UPF0079: Uncharacteri 93.4 0.069 1.5E-06 48.4 3.1 40 67-120 13-52 (123)
33 COG2894 MinD Septum formation 93.4 0.092 2E-06 53.2 4.2 36 69-108 2-37 (272)
34 PRK00698 tmk thymidylate kinas 93.1 0.11 2.3E-06 47.5 3.9 45 68-119 2-46 (205)
35 TIGR01969 minD_arch cell divis 92.7 0.12 2.6E-06 48.5 3.8 44 77-121 5-51 (251)
36 PRK13230 nitrogenase reductase 92.7 0.077 1.7E-06 51.8 2.5 31 81-112 9-39 (279)
37 cd02032 Bchl_like This family 92.6 0.08 1.7E-06 51.2 2.5 32 81-113 8-39 (267)
38 cd02040 NifH NifH gene encodes 92.5 0.13 2.9E-06 49.0 3.8 27 81-108 9-35 (270)
39 TIGR01281 DPOR_bchL light-inde 92.4 0.086 1.9E-06 50.9 2.5 31 81-112 8-38 (268)
40 PF02374 ArsA_ATPase: Anion-tr 92.3 0.082 1.8E-06 53.7 2.2 56 70-133 2-59 (305)
41 PLN02924 thymidylate kinase 92.2 0.17 3.8E-06 49.1 4.3 47 66-118 13-59 (220)
42 TIGR00064 ftsY signal recognit 92.1 0.18 3.9E-06 50.5 4.3 35 68-107 71-105 (272)
43 TIGR03815 CpaE_hom_Actino heli 92.0 0.22 4.9E-06 49.8 4.9 51 67-121 91-144 (322)
44 PRK10037 cell division protein 91.9 0.15 3.2E-06 49.2 3.3 44 76-120 5-50 (250)
45 TIGR01287 nifH nitrogenase iro 91.8 0.12 2.5E-06 50.3 2.5 27 81-108 8-34 (275)
46 TIGR00041 DTMP_kinase thymidyl 91.8 0.25 5.4E-06 45.1 4.5 40 69-114 3-42 (195)
47 PF01656 CbiA: CobQ/CobB/MinD/ 91.7 0.13 2.8E-06 46.1 2.6 32 79-111 5-36 (195)
48 cd01672 TMPK Thymidine monopho 91.5 0.29 6.3E-06 43.7 4.6 41 70-116 1-41 (200)
49 PRK13235 nifH nitrogenase redu 91.4 0.16 3.5E-06 49.5 3.2 38 80-118 8-45 (274)
50 PHA02518 ParA-like protein; Pr 91.4 0.15 3.2E-06 46.6 2.6 29 79-108 7-35 (211)
51 PRK13973 thymidylate kinase; P 91.4 0.28 6E-06 46.6 4.6 42 69-116 3-44 (213)
52 PRK11670 antiporter inner memb 91.2 0.22 4.8E-06 51.9 4.1 48 70-121 108-158 (369)
53 COG0125 Tmk Thymidylate kinase 91.0 0.28 6.1E-06 47.9 4.3 44 68-117 2-45 (208)
54 PRK13232 nifH nitrogenase redu 90.9 0.2 4.3E-06 48.9 3.2 32 80-112 8-39 (273)
55 PRK00090 bioD dithiobiotin syn 90.9 0.16 3.5E-06 47.7 2.5 30 77-107 4-33 (222)
56 PRK00300 gmk guanylate kinase; 90.9 0.25 5.3E-06 45.6 3.6 45 67-116 3-47 (205)
57 PF09140 MipZ: ATPase MipZ; I 90.6 0.11 2.4E-06 52.9 1.1 35 80-115 8-45 (261)
58 TIGR00150 HI0065_YjeE ATPase, 90.5 0.24 5.3E-06 45.4 3.2 71 67-162 20-91 (133)
59 PRK13234 nifH nitrogenase redu 90.4 0.23 4.9E-06 49.8 3.2 35 80-115 11-48 (295)
60 TIGR03371 cellulose_yhjQ cellu 90.4 0.23 4.9E-06 46.7 3.0 29 79-108 8-36 (246)
61 PRK10646 ADP-binding protein; 90.3 0.26 5.7E-06 46.3 3.3 28 67-98 26-53 (153)
62 CHL00072 chlL photochlorophyll 89.9 0.22 4.7E-06 50.0 2.6 32 81-113 8-39 (290)
63 TIGR02016 BchX chlorophyllide 89.6 0.3 6.5E-06 49.2 3.3 34 81-115 8-41 (296)
64 cd02035 ArsA ArsA ATPase funct 89.5 0.32 6.9E-06 46.3 3.3 27 81-108 7-33 (217)
65 PRK13231 nitrogenase reductase 89.2 0.18 3.8E-06 48.8 1.3 26 81-109 10-35 (264)
66 PRK13768 GTPase; Provisional 89.2 0.49 1.1E-05 46.6 4.4 39 70-113 3-41 (253)
67 PF13500 AAA_26: AAA domain; P 89.0 0.29 6.3E-06 45.3 2.5 32 77-110 5-36 (199)
68 COG0802 Predicted ATPase or ki 88.9 0.39 8.4E-06 45.4 3.3 28 67-98 23-50 (149)
69 PRK04296 thymidine kinase; Pro 88.9 0.52 1.1E-05 44.2 4.1 45 69-120 2-46 (190)
70 PRK10818 cell division inhibit 88.8 0.37 8E-06 46.5 3.2 36 69-108 2-37 (270)
71 PRK13233 nifH nitrogenase redu 88.8 0.35 7.6E-06 47.0 3.0 27 80-107 9-36 (275)
72 PRK10416 signal recognition pa 88.7 0.53 1.1E-05 48.4 4.4 36 67-107 112-147 (318)
73 PF00009 GTP_EFTU: Elongation 88.6 0.8 1.7E-05 42.0 5.1 36 438-474 110-145 (188)
74 cd03110 Fer4_NifH_child This p 88.4 0.34 7.4E-06 43.8 2.5 41 77-122 4-47 (179)
75 COG1149 MinD superfamily P-loo 88.2 0.51 1.1E-05 48.7 3.9 132 272-481 108-241 (284)
76 PRK13976 thymidylate kinase; P 88.1 0.57 1.2E-05 45.2 3.9 40 70-113 1-40 (209)
77 COG2804 PulE Type II secretory 87.9 0.54 1.2E-05 51.8 4.0 86 63-164 253-354 (500)
78 TIGR03263 guanyl_kin guanylate 87.4 0.42 9.2E-06 43.0 2.5 43 69-116 1-43 (180)
79 PRK13236 nitrogenase reductase 87.4 0.41 8.9E-06 48.0 2.6 33 81-114 14-46 (296)
80 COG0003 ArsA Predicted ATPase 87.3 0.6 1.3E-05 48.5 3.8 68 70-164 3-72 (322)
81 cd03111 CpaE_like This protein 87.2 0.5 1.1E-05 40.4 2.7 37 76-113 3-40 (106)
82 PF02223 Thymidylate_kin: Thym 87.0 0.35 7.6E-06 44.1 1.8 34 82-117 5-38 (186)
83 cd04165 GTPBP1_like GTPBP1-lik 87.0 1.6 3.5E-05 42.3 6.4 37 438-474 126-162 (224)
84 PRK10436 hypothetical protein; 86.4 0.71 1.5E-05 50.0 3.9 40 68-113 217-256 (462)
85 PRK14974 cell division protein 86.3 0.92 2E-05 47.3 4.5 36 67-107 138-173 (336)
86 PRK08233 hypothetical protein; 86.2 0.51 1.1E-05 42.1 2.3 25 69-97 3-27 (182)
87 cd02042 ParA ParA and ParB of 86.0 0.62 1.3E-05 38.5 2.6 32 81-113 8-39 (104)
88 PF06564 YhjQ: YhjQ protein; 86.0 0.66 1.4E-05 46.6 3.2 52 70-147 2-53 (243)
89 PF13614 AAA_31: AAA domain; P 85.8 1.1 2.3E-05 39.3 4.0 33 70-106 1-33 (157)
90 TIGR03499 FlhF flagellar biosy 85.6 1 2.2E-05 45.2 4.3 27 68-98 193-219 (282)
91 PRK05480 uridine/cytidine kina 85.6 1 2.2E-05 42.0 4.1 26 68-97 5-30 (209)
92 PRK12374 putative dithiobiotin 85.5 0.57 1.2E-05 45.1 2.4 32 77-110 7-38 (231)
93 cd03115 SRP The signal recogni 85.0 0.76 1.7E-05 41.5 2.9 28 81-109 8-35 (173)
94 PRK07933 thymidylate kinase; V 84.9 1.4 3.1E-05 42.3 4.8 40 70-115 1-40 (213)
95 PRK13849 putative crown gall t 84.8 0.86 1.9E-05 44.6 3.3 35 76-111 5-39 (231)
96 PRK10867 signal recognition pa 84.8 1.1 2.3E-05 48.4 4.2 36 69-109 100-136 (433)
97 COG1192 Soj ATPases involved i 84.6 0.62 1.3E-05 44.7 2.2 29 80-108 10-38 (259)
98 PRK00889 adenylylsulfate kinas 84.5 1.3 2.7E-05 40.3 4.0 34 67-105 2-35 (175)
99 cd02025 PanK Pantothenate kina 84.4 0.88 1.9E-05 44.0 3.1 35 81-139 7-41 (220)
100 COG1797 CobB Cobyrinic acid a, 83.0 0.7 1.5E-05 50.3 2.0 26 78-104 6-31 (451)
101 PRK12726 flagellar biosynthesi 82.8 1.5 3.2E-05 47.4 4.2 35 67-106 204-238 (407)
102 PLN00043 elongation factor 1-a 82.7 2.7 5.8E-05 45.2 6.2 77 377-480 94-183 (447)
103 TIGR01420 pilT_fam pilus retra 82.4 1.7 3.6E-05 44.8 4.4 40 68-112 121-160 (343)
104 PRK00131 aroK shikimate kinase 82.1 1.2 2.6E-05 39.2 2.8 28 67-98 2-29 (175)
105 PRK00771 signal recognition pa 81.2 1.8 3.8E-05 46.8 4.2 35 69-108 95-129 (437)
106 PTZ00141 elongation factor 1- 81.2 1.6 3.5E-05 46.7 4.0 71 378-475 95-174 (446)
107 PF03029 ATP_bind_1: Conserved 80.7 1.3 2.8E-05 43.7 2.7 27 81-108 4-30 (238)
108 TIGR00379 cobB cobyrinic acid 80.5 1.2 2.7E-05 47.5 2.8 31 77-108 4-34 (449)
109 KOG0635 Adenosine 5'-phosphosu 80.5 2.3 5.1E-05 41.5 4.3 35 67-106 29-63 (207)
110 cd02038 FleN-like FleN is a me 80.2 2 4.4E-05 38.1 3.6 32 80-112 7-38 (139)
111 PRK03846 adenylylsulfate kinas 80.1 2.2 4.8E-05 39.9 4.0 35 67-106 22-56 (198)
112 PTZ00301 uridine kinase; Provi 80.0 1.6 3.5E-05 42.4 3.1 27 70-100 4-30 (210)
113 PRK06696 uridine kinase; Valid 79.9 2 4.3E-05 41.1 3.6 29 69-102 22-50 (223)
114 PF13604 AAA_30: AAA domain; P 79.4 2.8 6E-05 39.7 4.4 36 68-108 17-52 (196)
115 cd03109 DTBS Dethiobiotin synt 79.3 1.5 3.3E-05 39.1 2.5 28 81-110 7-34 (134)
116 PRK05541 adenylylsulfate kinas 79.0 3.1 6.7E-05 37.8 4.5 35 67-106 5-39 (176)
117 cd01131 PilT Pilus retraction 79.0 2.6 5.7E-05 39.7 4.2 38 71-113 3-40 (198)
118 PRK13896 cobyrinic acid a,c-di 78.4 1.5 3.4E-05 47.2 2.7 39 72-118 4-42 (433)
119 TIGR00235 udk uridine kinase. 78.3 1.8 3.9E-05 40.7 2.8 28 66-97 3-30 (207)
120 TIGR02533 type_II_gspE general 78.2 6.9 0.00015 42.7 7.5 39 67-112 241-279 (486)
121 cd01394 radB RadB. The archaea 78.1 2.6 5.6E-05 39.5 3.8 37 66-107 16-52 (218)
122 PF01583 APS_kinase: Adenylyls 77.6 2.5 5.5E-05 39.8 3.6 36 68-108 1-36 (156)
123 cd01822 Lysophospholipase_L1_l 77.4 40 0.00087 29.7 10.9 106 349-481 24-137 (177)
124 smart00763 AAA_PrkA PrkA AAA d 77.4 1.9 4.1E-05 45.8 3.0 79 46-143 52-133 (361)
125 TIGR02237 recomb_radB DNA repa 77.2 2.9 6.2E-05 38.8 3.8 33 67-104 10-42 (209)
126 TIGR02538 type_IV_pilB type IV 77.1 2.3 4.9E-05 46.9 3.6 39 69-113 316-354 (564)
127 TIGR02524 dot_icm_DotB Dot/Icm 77.0 3.3 7.2E-05 43.4 4.6 43 68-114 133-176 (358)
128 cd01828 sialate_O-acetylestera 76.9 13 0.00028 33.0 7.7 94 364-481 21-126 (169)
129 COG0826 Collagenase and relate 76.7 6.4 0.00014 41.5 6.5 49 438-487 50-100 (347)
130 PF07015 VirC1: VirC1 protein; 76.1 1.8 4E-05 43.4 2.4 29 79-108 8-36 (231)
131 COG0771 MurD UDP-N-acetylmuram 76.0 3 6.6E-05 45.4 4.1 97 30-161 84-193 (448)
132 TIGR02322 phosphon_PhnN phosph 75.5 2.2 4.7E-05 38.7 2.5 26 69-98 1-26 (179)
133 TIGR03470 HpnH hopanoid biosyn 75.4 9.7 0.00021 38.9 7.3 56 437-492 149-204 (318)
134 PRK01077 cobyrinic acid a,c-di 74.9 1.7 3.7E-05 46.3 1.9 33 71-107 5-37 (451)
135 smart00382 AAA ATPases associa 74.6 2.1 4.5E-05 34.3 1.9 26 69-98 2-27 (148)
136 TIGR00676 fadh2 5,10-methylene 74.3 8.2 0.00018 38.7 6.4 101 352-460 147-261 (272)
137 TIGR00677 fadh2_euk methylenet 74.3 10 0.00022 38.5 7.1 127 339-480 138-277 (281)
138 PRK00784 cobyric acid synthase 74.0 2.1 4.5E-05 46.2 2.3 32 71-106 4-35 (488)
139 TIGR01425 SRP54_euk signal rec 73.5 4.1 8.9E-05 44.1 4.3 35 69-108 100-134 (429)
140 PRK15453 phosphoribulokinase; 73.3 3.9 8.5E-05 42.4 3.9 32 68-104 4-35 (290)
141 PRK09361 radB DNA repair and r 72.9 5 0.00011 37.8 4.3 36 66-106 20-55 (225)
142 TIGR00959 ffh signal recogniti 72.1 3 6.4E-05 45.0 2.9 35 70-108 100-134 (428)
143 TIGR02525 plasmid_TraJ plasmid 72.0 5 0.00011 42.5 4.5 42 69-114 149-190 (372)
144 cd01129 PulE-GspE PulE/GspE Th 71.9 5.1 0.00011 40.0 4.3 39 69-113 80-118 (264)
145 PHA00729 NTP-binding motif con 71.7 2.9 6.2E-05 41.8 2.5 24 71-98 19-42 (226)
146 TIGR00475 selB selenocysteine- 71.6 14 0.0003 41.2 7.9 41 438-478 90-135 (581)
147 PF05729 NACHT: NACHT domain 71.4 3.8 8.2E-05 35.3 2.9 25 70-98 1-25 (166)
148 cd00009 AAA The AAA+ (ATPases 71.2 6.9 0.00015 31.9 4.2 27 67-97 17-43 (151)
149 cd00046 DEXDc DEAD-like helica 71.0 3.9 8.4E-05 33.0 2.7 18 81-98 8-25 (144)
150 cd02028 UMPK_like Uridine mono 70.9 4.3 9.2E-05 37.9 3.3 29 71-104 1-29 (179)
151 cd02023 UMPK Uridine monophosp 70.8 3.1 6.6E-05 38.5 2.3 17 81-97 7-23 (198)
152 cd07062 Peptidase_S66_mccF_lik 70.8 7.7 0.00017 39.5 5.4 64 438-505 19-88 (308)
153 TIGR00455 apsK adenylylsulfate 70.8 5.5 0.00012 36.5 3.9 33 67-104 16-48 (184)
154 PRK13886 conjugal transfer pro 70.6 5.6 0.00012 40.1 4.2 44 70-118 3-46 (241)
155 TIGR00485 EF-Tu translation el 70.6 13 0.00028 38.8 7.1 71 378-479 85-162 (394)
156 PRK05632 phosphate acetyltrans 70.4 3.1 6.8E-05 46.8 2.7 35 71-110 4-38 (684)
157 PRK07667 uridine kinase; Provi 70.3 5.8 0.00013 37.2 4.0 31 69-104 17-47 (193)
158 cd00227 CPT Chloramphenicol (C 70.2 3.9 8.5E-05 37.4 2.8 26 69-98 2-27 (175)
159 PLN02348 phosphoribulokinase 70.0 6 0.00013 42.7 4.5 25 70-98 50-74 (395)
160 COG0529 CysC Adenylylsulfate k 69.7 5.9 0.00013 39.3 4.0 36 67-107 21-56 (197)
161 PRK06278 cobyrinic acid a,c-di 69.6 3.3 7.2E-05 45.3 2.6 24 72-98 241-264 (476)
162 PF13245 AAA_19: Part of AAA d 69.5 4.4 9.5E-05 33.5 2.7 27 68-98 9-35 (76)
163 PF00448 SRP54: SRP54-type pro 69.4 3.9 8.5E-05 39.1 2.8 30 71-105 3-32 (196)
164 TIGR03881 KaiC_arch_4 KaiC dom 69.4 6.7 0.00015 37.0 4.3 35 66-105 17-51 (229)
165 COG0194 Gmk Guanylate kinase [ 68.8 5.3 0.00012 39.4 3.6 46 68-119 3-48 (191)
166 COG0532 InfB Translation initi 68.8 7.8 0.00017 43.1 5.2 94 376-500 63-162 (509)
167 PRK11253 ldcA L,D-carboxypepti 67.8 8.8 0.00019 39.4 5.1 63 438-505 18-88 (305)
168 PF13086 AAA_11: AAA domain; P 67.7 4.2 9.1E-05 36.8 2.5 23 71-97 19-41 (236)
169 PF13238 AAA_18: AAA domain; P 67.7 4.5 9.7E-05 33.6 2.5 22 72-97 1-22 (129)
170 COG2229 Predicted GTPase [Gene 67.5 3.9 8.4E-05 40.2 2.3 49 451-503 122-173 (187)
171 PRK00098 GTPase RsgA; Reviewed 67.0 40 0.00087 34.1 9.5 43 439-481 100-143 (298)
172 PRK14722 flhF flagellar biosyn 67.0 7.7 0.00017 41.3 4.6 33 67-103 135-167 (374)
173 PF00485 PRK: Phosphoribulokin 67.0 3.7 8E-05 38.2 2.0 28 72-104 2-29 (194)
174 PRK07259 dihydroorotate dehydr 67.0 29 0.00063 34.8 8.4 36 447-485 88-124 (301)
175 PF13207 AAA_17: AAA domain; P 66.8 3.3 7.2E-05 34.7 1.5 22 72-97 2-23 (121)
176 PRK13764 ATPase; Provisional 66.6 6.8 0.00015 44.2 4.3 39 68-112 256-294 (602)
177 cd07025 Peptidase_S66 LD-Carbo 66.6 11 0.00024 38.0 5.4 64 438-505 15-84 (282)
178 TIGR03420 DnaA_homol_Hda DnaA 66.5 7.2 0.00016 36.3 3.8 42 58-104 27-68 (226)
179 TIGR02493 PFLA pyruvate format 66.4 14 0.00031 35.1 5.8 43 438-480 144-188 (235)
180 PRK12724 flagellar biosynthesi 66.3 7 0.00015 42.6 4.2 37 68-108 222-258 (432)
181 PF00437 T2SE: Type II/IV secr 66.2 7.2 0.00016 37.9 3.9 39 68-112 126-164 (270)
182 COG0283 Cmk Cytidylate kinase 65.8 3.1 6.8E-05 41.8 1.3 18 81-98 12-29 (222)
183 PRK05703 flhF flagellar biosyn 65.7 7.8 0.00017 41.5 4.4 26 68-97 220-245 (424)
184 TIGR00750 lao LAO/AO transport 65.5 9.8 0.00021 38.4 4.8 41 67-112 32-72 (300)
185 PRK06067 flagellar accessory p 65.2 9.4 0.0002 36.4 4.4 43 65-112 21-64 (234)
186 PRK06762 hypothetical protein; 65.0 5.2 0.00011 35.8 2.5 25 69-97 2-26 (166)
187 cd01834 SGNH_hydrolase_like_2 65.0 93 0.002 27.5 10.4 117 348-481 18-149 (191)
188 COG1213 Predicted sugar nucleo 64.8 11 0.00024 38.4 5.0 55 435-495 30-86 (239)
189 cd03174 DRE_TIM_metallolyase D 64.8 22 0.00048 34.0 6.9 54 435-488 113-168 (265)
190 PRK13974 thymidylate kinase; P 64.8 9.8 0.00021 36.2 4.4 44 68-116 2-49 (212)
191 cd02034 CooC The accessory pro 64.3 5.4 0.00012 35.2 2.4 42 81-123 7-49 (116)
192 PRK13946 shikimate kinase; Pro 64.3 4.7 0.0001 37.4 2.1 26 69-98 10-35 (184)
193 PF00625 Guanylate_kin: Guanyl 64.2 5.4 0.00012 36.7 2.5 43 69-115 2-44 (183)
194 PRK13975 thymidylate kinase; P 64.0 5.6 0.00012 36.3 2.6 26 69-98 2-27 (196)
195 cd01866 Rab2 Rab2 subfamily. 63.9 20 0.00043 31.8 5.9 45 437-481 93-142 (168)
196 TIGR00036 dapB dihydrodipicoli 63.8 16 0.00034 36.6 5.8 51 438-492 80-130 (266)
197 PRK14738 gmk guanylate kinase; 63.8 7.7 0.00017 36.9 3.5 26 65-94 9-34 (206)
198 cd00959 DeoC 2-deoxyribose-5-p 63.8 28 0.0006 33.3 7.3 44 450-494 116-159 (203)
199 PRK06761 hypothetical protein; 63.7 7.2 0.00016 40.0 3.5 40 69-114 3-42 (282)
200 PRK14527 adenylate kinase; Pro 62.8 6.4 0.00014 36.5 2.8 28 67-98 4-31 (191)
201 PRK04308 murD UDP-N-acetylmura 62.6 8.7 0.00019 40.2 4.0 32 68-106 109-140 (445)
202 COG1855 ATPase (PilT family) [ 62.1 9.2 0.0002 42.8 4.1 47 58-112 254-300 (604)
203 PRK06547 hypothetical protein; 61.9 5.8 0.00013 37.3 2.3 25 69-97 15-39 (172)
204 PRK04663 murD UDP-N-acetylmura 61.7 9 0.0002 40.3 3.9 31 69-106 108-138 (438)
205 PF02219 MTHFR: Methylenetetra 61.1 5.5 0.00012 39.9 2.1 112 353-479 163-287 (287)
206 cd00945 Aldolase_Class_I Class 61.0 43 0.00094 30.0 7.6 54 438-491 98-154 (201)
207 PRK03839 putative kinase; Prov 61.0 6.4 0.00014 35.9 2.4 24 71-98 2-25 (180)
208 PRK04040 adenylate kinase; Pro 61.0 6.8 0.00015 37.2 2.6 25 69-97 2-26 (188)
209 PRK02006 murD UDP-N-acetylmura 60.8 10 0.00022 40.6 4.2 32 69-107 121-152 (498)
210 cd02029 PRK_like Phosphoribulo 60.5 8.2 0.00018 39.9 3.2 28 72-104 2-29 (277)
211 cd04106 Rab23_lke Rab23-like s 60.4 29 0.00064 29.9 6.2 41 449-490 105-147 (162)
212 TIGR03880 KaiC_arch_3 KaiC dom 60.3 13 0.00029 35.0 4.5 41 66-111 13-54 (224)
213 COG1838 FumA Tartrate dehydrat 59.9 11 0.00023 37.2 3.7 153 279-469 12-177 (184)
214 TIGR00539 hemN_rel putative ox 59.8 34 0.00073 35.3 7.6 82 402-487 103-188 (360)
215 PRK01368 murD UDP-N-acetylmura 59.7 10 0.00022 40.6 3.9 79 69-161 104-184 (454)
216 PF03205 MobB: Molybdopterin g 59.5 19 0.00042 32.7 5.2 48 71-123 2-49 (140)
217 COG1348 NifH Nitrogenase subun 59.5 7.6 0.00017 40.1 2.8 41 82-123 10-50 (278)
218 PLN02165 adenylate isopentenyl 59.2 7.4 0.00016 41.1 2.7 29 66-98 40-68 (334)
219 TIGR01087 murD UDP-N-acetylmur 59.2 11 0.00023 39.3 3.9 33 69-108 102-134 (433)
220 PF13191 AAA_16: AAA ATPase do 59.0 9 0.00019 33.9 2.9 31 66-100 21-51 (185)
221 PF02421 FeoB_N: Ferrous iron 58.7 7 0.00015 36.8 2.2 51 443-496 98-149 (156)
222 PRK15452 putative protease; Pr 58.6 28 0.00061 37.9 7.0 88 392-486 3-96 (443)
223 cd00071 GMPK Guanosine monopho 58.5 4.9 0.00011 36.0 1.1 35 81-115 7-41 (137)
224 PF00142 Fer4_NifH: 4Fe-4S iro 58.4 7.2 0.00016 40.3 2.4 35 82-117 9-43 (273)
225 PLN03126 Elongation factor Tu; 58.4 16 0.00035 39.9 5.2 73 377-480 153-232 (478)
226 PF02016 Peptidase_S66: LD-car 58.3 8.8 0.00019 38.8 3.0 65 437-505 14-84 (284)
227 TIGR00708 cobA cob(I)alamin ad 58.2 9.5 0.0002 36.7 3.1 36 67-108 4-39 (173)
228 COG1703 ArgK Putative periplas 58.0 12 0.00026 39.6 4.0 38 76-115 55-92 (323)
229 cd00561 CobA_CobO_BtuR ATP:cor 57.7 9.6 0.00021 36.1 3.0 27 80-107 9-35 (159)
230 PF06068 TIP49: TIP49 C-termin 57.4 6.9 0.00015 42.3 2.2 27 68-98 49-75 (398)
231 TIGR02109 PQQ_syn_pqqE coenzym 56.9 42 0.00092 34.2 7.6 50 436-486 131-180 (358)
232 PF01113 DapB_N: Dihydrodipico 56.7 14 0.00031 32.6 3.8 37 438-477 79-115 (124)
233 cd00154 Rab Rab family. Rab G 56.7 45 0.00098 27.7 6.6 51 438-489 90-145 (159)
234 PTZ00327 eukaryotic translatio 56.6 33 0.00072 37.4 7.2 66 377-472 126-193 (460)
235 cd04501 SGNH_hydrolase_like_4 56.6 67 0.0014 28.8 8.0 105 364-492 31-151 (183)
236 TIGR03878 thermo_KaiC_2 KaiC d 56.5 16 0.00035 36.1 4.5 35 67-106 34-68 (259)
237 PRK01438 murD UDP-N-acetylmura 56.3 12 0.00027 39.4 3.9 33 68-107 121-153 (480)
238 cd01673 dNK Deoxyribonucleosid 56.3 7.1 0.00015 35.8 1.9 32 71-113 1-32 (193)
239 COG0857 Pta BioD-like N-termin 55.9 8.4 0.00018 40.8 2.5 28 77-105 7-34 (354)
240 PRK09856 fructoselysine 3-epim 55.8 58 0.0013 31.5 8.1 59 428-488 81-150 (275)
241 TIGR03574 selen_PSTK L-seryl-t 55.8 12 0.00026 36.2 3.4 31 71-106 1-31 (249)
242 PF00004 AAA: ATPase family as 55.6 6.1 0.00013 32.9 1.2 18 81-98 6-23 (132)
243 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 55.5 27 0.00059 30.5 5.3 46 436-481 90-140 (166)
244 TIGR00176 mobB molybdopterin-g 55.4 9.7 0.00021 35.1 2.6 27 82-110 8-34 (155)
245 cd04145 M_R_Ras_like M-Ras/R-R 55.3 45 0.00098 28.7 6.6 40 448-488 105-146 (164)
246 PRK12727 flagellar biosynthesi 55.0 15 0.00032 41.5 4.3 28 67-98 348-375 (559)
247 PRK05439 pantothenate kinase; 54.8 10 0.00022 39.5 2.9 42 71-140 88-129 (311)
248 PRK14106 murD UDP-N-acetylmura 54.6 19 0.00041 37.5 4.8 31 69-106 108-138 (450)
249 PRK12723 flagellar biosynthesi 54.6 15 0.00033 39.2 4.2 26 69-98 174-199 (388)
250 PRK03803 murD UDP-N-acetylmura 54.5 13 0.00029 38.9 3.7 32 69-107 108-139 (448)
251 COG0132 BioD Dethiobiotin synt 54.4 9.9 0.00021 38.0 2.6 33 70-106 3-35 (223)
252 TIGR02768 TraA_Ti Ti-type conj 54.4 14 0.00031 42.3 4.2 35 69-108 368-402 (744)
253 PLN02748 tRNA dimethylallyltra 54.3 9.1 0.0002 42.0 2.6 83 67-158 20-106 (468)
254 TIGR03598 GTPase_YsxC ribosome 54.2 29 0.00064 31.4 5.4 36 444-479 123-162 (179)
255 cd04107 Rab32_Rab38 Rab38/Rab3 54.2 45 0.00097 30.8 6.7 33 448-480 108-142 (201)
256 PRK09435 membrane ATPase/prote 54.1 19 0.00042 37.7 4.8 82 23-113 13-95 (332)
257 PRK03369 murD UDP-N-acetylmura 54.1 14 0.00031 39.7 3.9 32 69-107 117-148 (488)
258 PLN02840 tRNA dimethylallyltra 54.0 9 0.00019 41.6 2.4 28 67-98 19-46 (421)
259 cd01130 VirB11-like_ATPase Typ 53.9 9.4 0.0002 35.5 2.3 27 67-97 23-49 (186)
260 cd01122 GP4d_helicase GP4d_hel 53.9 18 0.00039 35.0 4.2 27 67-97 28-54 (271)
261 KOG0744 AAA+-type ATPase [Post 53.7 10 0.00022 41.0 2.6 27 68-98 176-202 (423)
262 PRK08533 flagellar accessory p 53.7 21 0.00045 34.9 4.6 33 67-104 22-54 (230)
263 KOG1970 Checkpoint RAD17-RFC c 53.7 8.9 0.00019 43.5 2.4 31 64-98 105-135 (634)
264 cd00984 DnaB_C DnaB helicase C 53.7 20 0.00043 33.9 4.4 55 66-158 10-64 (242)
265 cd03110 Fer4_NifH_child This p 53.5 37 0.0008 30.7 6.0 41 440-481 133-173 (179)
266 PF03215 Rad17: Rad17 cell cyc 53.3 11 0.00023 41.8 2.9 30 65-98 41-70 (519)
267 KOG1144 Translation initiation 53.1 17 0.00036 42.9 4.4 54 376-459 548-601 (1064)
268 TIGR00231 small_GTP small GTP- 53.1 49 0.0011 27.1 6.1 55 441-497 99-153 (161)
269 PRK10512 selenocysteinyl-tRNA- 52.9 28 0.00062 39.2 6.1 42 438-479 91-137 (614)
270 cd02020 CMPK Cytidine monophos 52.9 7.6 0.00016 33.3 1.4 18 81-98 7-24 (147)
271 PRK08154 anaerobic benzoate ca 52.7 13 0.00029 37.7 3.3 27 68-98 132-158 (309)
272 cd00983 recA RecA is a bacter 52.5 15 0.00033 38.5 3.7 69 31-106 10-87 (325)
273 cd04124 RabL2 RabL2 subfamily. 52.3 73 0.0016 28.1 7.5 45 436-481 88-134 (161)
274 PRK10536 hypothetical protein; 52.3 23 0.00049 36.5 4.8 37 69-110 74-111 (262)
275 PF04055 Radical_SAM: Radical 52.2 35 0.00075 28.9 5.3 39 436-474 126-165 (166)
276 cd04101 RabL4 RabL4 (Rab-like4 52.2 30 0.00064 30.0 4.9 38 449-487 106-145 (164)
277 PF01202 SKI: Shikimate kinase 51.9 7.6 0.00016 35.2 1.3 16 83-98 2-17 (158)
278 PRK12735 elongation factor Tu; 51.9 37 0.0008 35.7 6.4 42 438-479 115-162 (396)
279 TIGR03877 thermo_KaiC_1 KaiC d 51.8 21 0.00045 34.6 4.3 40 66-111 18-59 (237)
280 TIGR00554 panK_bact pantothena 51.5 13 0.00028 38.2 3.0 36 81-140 70-105 (290)
281 PRK01184 hypothetical protein; 51.4 11 0.00023 34.5 2.1 33 70-111 2-37 (184)
282 COG4240 Predicted kinase [Gene 51.1 13 0.00027 38.7 2.8 34 74-109 52-85 (300)
283 PRK15455 PrkA family serine pr 51.1 14 0.00031 42.2 3.5 70 47-143 78-152 (644)
284 COG4088 Predicted nucleotide k 50.7 14 0.0003 37.9 3.0 24 71-98 3-26 (261)
285 PF00910 RNA_helicase: RNA hel 50.7 11 0.00023 32.3 1.9 77 81-168 6-85 (107)
286 cd03114 ArgK-like The function 50.6 17 0.00037 33.1 3.3 32 81-113 7-38 (148)
287 PRK14494 putative molybdopteri 50.5 17 0.00037 36.2 3.6 33 70-107 2-34 (229)
288 TIGR00126 deoC deoxyribose-pho 50.5 60 0.0013 32.0 7.3 45 450-495 117-161 (211)
289 PRK05506 bifunctional sulfate 50.3 15 0.00033 40.9 3.5 39 67-111 458-496 (632)
290 cd01821 Rhamnogalacturan_acety 50.3 1.7E+02 0.0036 26.8 9.8 52 427-481 87-148 (198)
291 COG1072 CoaA Panthothenate kin 50.3 13 0.00027 38.8 2.7 45 68-139 80-124 (283)
292 PRK00049 elongation factor Tu; 50.2 43 0.00093 35.3 6.6 25 438-462 115-140 (396)
293 PRK08084 DNA replication initi 50.2 19 0.0004 35.1 3.7 43 58-105 34-76 (235)
294 TIGR01448 recD_rel helicase, p 50.2 17 0.00038 41.5 4.0 30 68-102 337-366 (720)
295 cd03271 ABC_UvrA_II The excisi 49.9 25 0.00055 35.4 4.7 33 67-103 19-52 (261)
296 PRK06217 hypothetical protein; 49.9 11 0.00023 34.9 1.9 22 72-97 4-25 (183)
297 TIGR03471 HpnJ hopanoid biosyn 49.9 36 0.00078 36.4 6.1 77 401-481 289-368 (472)
298 TIGR01313 therm_gnt_kin carboh 49.9 8.2 0.00018 34.4 1.1 17 81-97 6-22 (163)
299 cd04138 H_N_K_Ras_like H-Ras/N 49.8 61 0.0013 27.6 6.4 44 449-495 105-149 (162)
300 PRK13948 shikimate kinase; Pro 49.6 14 0.00031 35.2 2.7 28 67-98 8-35 (182)
301 PF13173 AAA_14: AAA domain 49.6 16 0.00035 31.8 2.9 26 68-97 1-26 (128)
302 PRK06526 transposase; Provisio 49.4 10 0.00022 37.9 1.8 70 31-105 55-129 (254)
303 cd00881 GTP_translation_factor 49.3 38 0.00082 29.7 5.2 31 441-471 105-135 (189)
304 cd01884 EF_Tu EF-Tu subfamily. 49.3 39 0.00084 32.2 5.6 43 438-480 105-153 (195)
305 cd04170 EF-G_bact Elongation f 49.2 44 0.00095 32.7 6.1 42 440-481 106-147 (268)
306 PRK13833 conjugal transfer pro 49.0 24 0.00051 36.9 4.4 41 69-113 144-184 (323)
307 PLN02772 guanylate kinase 48.9 14 0.00031 39.9 2.9 68 47-118 110-180 (398)
308 cd03278 ABC_SMC_barmotin Barmo 48.7 12 0.00027 35.4 2.2 58 44-117 5-62 (197)
309 PF02562 PhoH: PhoH-like prote 48.7 18 0.00039 35.6 3.4 40 69-113 19-59 (205)
310 PRK04328 hypothetical protein; 48.6 25 0.00054 34.6 4.3 39 67-111 21-61 (249)
311 PRK14737 gmk guanylate kinase; 48.4 17 0.00038 34.4 3.1 45 67-116 2-46 (186)
312 PF02171 Piwi: Piwi domain; I 48.3 36 0.00079 33.7 5.5 120 351-479 50-182 (302)
313 TIGR00313 cobQ cobyric acid sy 48.3 12 0.00027 40.5 2.4 29 77-106 3-31 (475)
314 PRK09183 transposase/IS protei 48.1 22 0.00048 35.4 3.9 35 67-106 100-134 (259)
315 TIGR02881 spore_V_K stage V sp 48.0 11 0.00024 36.9 1.8 26 72-102 45-70 (261)
316 PRK08762 molybdopterin biosynt 47.9 65 0.0014 33.7 7.5 83 197-307 94-176 (376)
317 TIGR02034 CysN sulfate adenyly 47.9 39 0.00085 35.7 5.9 25 439-463 121-146 (406)
318 PF00682 HMGL-like: HMGL-like 47.9 69 0.0015 30.7 7.1 58 432-489 103-160 (237)
319 PRK00652 lpxK tetraacyldisacch 47.9 14 0.00031 38.5 2.7 37 71-110 51-87 (325)
320 TIGR02012 tigrfam_recA protein 47.8 20 0.00043 37.6 3.7 69 31-106 10-87 (321)
321 PRK14493 putative bifunctional 47.7 21 0.00045 36.3 3.7 34 71-111 3-36 (274)
322 PRK12339 2-phosphoglycerate ki 47.7 14 0.0003 35.6 2.4 26 68-97 2-27 (197)
323 cd04113 Rab4 Rab4 subfamily. 47.4 52 0.0011 28.5 5.7 44 438-481 90-138 (161)
324 PRK13210 putative L-xylulose 5 47.4 80 0.0017 30.5 7.5 61 427-488 84-154 (284)
325 PRK04165 acetyl-CoA decarbonyl 47.4 35 0.00076 37.5 5.6 46 437-487 188-233 (450)
326 cd01829 SGNH_hydrolase_peri2 S 47.3 1.5E+02 0.0032 26.9 8.9 52 437-489 95-153 (200)
327 PRK07952 DNA replication prote 47.3 16 0.00034 36.6 2.8 32 70-106 100-131 (244)
328 PF06745 KaiC: KaiC; InterPro 47.3 22 0.00049 33.5 3.7 42 67-113 17-60 (226)
329 cd04163 Era Era subfamily. Er 47.1 75 0.0016 26.6 6.5 39 441-479 102-141 (168)
330 PRK09354 recA recombinase A; P 47.1 21 0.00045 38.0 3.7 71 30-107 14-93 (349)
331 PRK08939 primosomal protein Dn 47.0 27 0.00059 35.9 4.5 71 31-106 108-188 (306)
332 PRK01390 murD UDP-N-acetylmura 47.0 22 0.00047 37.5 3.9 33 68-107 113-145 (460)
333 COG0455 flhG Antiactivator of 46.8 15 0.00033 37.2 2.6 42 81-122 11-55 (262)
334 PRK05986 cob(I)alamin adenolsy 46.8 18 0.0004 35.4 3.1 35 67-107 21-55 (191)
335 PRK02705 murD UDP-N-acetylmura 46.6 23 0.0005 37.1 4.0 34 68-108 108-141 (459)
336 COG0467 RAD55 RecA-superfamily 46.5 24 0.00052 34.4 3.8 42 67-113 21-63 (260)
337 PRK13851 type IV secretion sys 46.1 16 0.00034 38.4 2.7 39 67-112 160-198 (344)
338 PRK04690 murD UDP-N-acetylmura 45.9 21 0.00045 38.3 3.6 31 69-106 115-145 (468)
339 TIGR01360 aden_kin_iso1 adenyl 45.8 19 0.00041 32.3 2.8 25 69-97 3-27 (188)
340 COG2909 MalT ATP-dependent tra 45.8 13 0.00028 43.9 2.1 35 57-95 25-59 (894)
341 PF01261 AP_endonuc_2: Xylose 45.8 98 0.0021 27.7 7.4 65 427-493 62-138 (213)
342 PHA02530 pseT polynucleotide k 45.7 14 0.0003 36.3 2.1 24 70-97 3-26 (300)
343 PF02492 cobW: CobW/HypB/UreG, 45.7 29 0.00063 32.1 4.1 35 71-111 2-36 (178)
344 cd02021 GntK Gluconate kinase 45.7 9.9 0.00021 33.3 1.0 24 71-98 1-24 (150)
345 PHA02096 hypothetical protein 45.4 16 0.00035 32.3 2.2 35 427-461 40-76 (103)
346 PRK00091 miaA tRNA delta(2)-is 45.3 16 0.00034 37.8 2.5 26 69-98 4-29 (307)
347 cd00019 AP2Ec AP endonuclease 45.3 86 0.0019 30.6 7.5 67 424-491 72-147 (279)
348 PRK05301 pyrroloquinoline quin 45.1 71 0.0015 33.0 7.2 50 436-486 140-189 (378)
349 PF02606 LpxK: Tetraacyldisacc 45.1 31 0.00066 36.0 4.6 66 68-147 34-99 (326)
350 COG0552 FtsY Signal recognitio 45.0 32 0.0007 36.7 4.7 35 69-108 139-173 (340)
351 PRK13947 shikimate kinase; Pro 44.9 12 0.00026 33.5 1.4 23 72-98 4-26 (171)
352 PRK04220 2-phosphoglycerate ki 44.9 18 0.00039 37.7 2.9 37 57-97 80-116 (301)
353 cd04139 RalA_RalB RalA/RalB su 44.8 68 0.0015 27.4 6.0 48 438-486 92-142 (164)
354 cd01886 EF-G Elongation factor 44.7 51 0.0011 33.1 5.9 24 440-463 106-129 (270)
355 PF13481 AAA_25: AAA domain; P 44.6 22 0.00048 32.2 3.1 27 67-97 30-56 (193)
356 PF12774 AAA_6: Hydrolytic ATP 44.6 11 0.00024 37.3 1.3 70 80-159 39-111 (231)
357 TIGR00376 DNA helicase, putati 44.5 17 0.00037 41.0 2.8 34 70-108 174-207 (637)
358 PF13401 AAA_22: AAA domain; P 44.4 19 0.0004 30.3 2.4 27 68-98 3-29 (131)
359 PF08303 tRNA_lig_kinase: tRNA 44.3 9.9 0.00022 36.9 0.8 17 81-97 7-23 (168)
360 PRK10078 ribose 1,5-bisphospho 44.3 16 0.00034 33.8 2.1 25 69-97 2-26 (186)
361 PRK03806 murD UDP-N-acetylmura 44.1 26 0.00057 36.6 3.9 31 69-106 105-135 (438)
362 COG1038 PycA Pyruvate carboxyl 44.0 61 0.0013 38.8 7.0 83 403-496 74-174 (1149)
363 PRK05306 infB translation init 44.0 37 0.00081 39.6 5.4 23 441-463 380-402 (787)
364 PRK00141 murD UDP-N-acetylmura 43.8 23 0.0005 38.0 3.5 31 69-106 121-151 (473)
365 smart00175 RAB Rab subfamily o 43.6 66 0.0014 27.6 5.7 33 449-481 104-138 (164)
366 TIGR03822 AblA_like_2 lysine-2 43.6 81 0.0018 32.5 7.3 50 437-486 214-265 (321)
367 PRK08118 topology modulation p 43.4 13 0.00027 34.5 1.3 23 72-98 4-26 (167)
368 cd01897 NOG NOG1 is a nucleola 43.1 76 0.0017 27.6 6.1 32 450-481 113-144 (168)
369 TIGR00542 hxl6Piso_put hexulos 43.1 1.2E+02 0.0026 29.7 8.1 60 427-487 84-153 (279)
370 PF00931 NB-ARC: NB-ARC domain 43.0 24 0.00052 33.9 3.2 27 67-97 17-43 (287)
371 PRK02472 murD UDP-N-acetylmura 43.0 28 0.0006 36.3 3.9 31 69-106 108-138 (447)
372 cd07944 DRE_TIM_HOA_like 4-hyd 42.9 82 0.0018 31.7 7.0 54 436-489 108-161 (266)
373 PRK05537 bifunctional sulfate 42.8 24 0.00052 39.4 3.6 40 67-111 390-429 (568)
374 cd07939 DRE_TIM_NifV Streptomy 42.6 1.1E+02 0.0024 30.2 7.8 57 433-489 106-162 (259)
375 PRK12289 GTPase RsgA; Reviewed 42.6 72 0.0016 33.7 6.8 56 438-496 108-163 (352)
376 COG1224 TIP49 DNA helicase TIP 42.5 21 0.00046 39.0 3.0 28 67-98 63-90 (450)
377 smart00729 Elp3 Elongator prot 42.4 1.2E+02 0.0026 26.8 7.3 59 437-495 136-196 (216)
378 PF13671 AAA_33: AAA domain; P 42.4 13 0.00027 32.0 1.1 23 71-97 1-23 (143)
379 PRK00683 murD UDP-N-acetylmura 42.4 30 0.00065 36.2 4.1 80 68-161 101-184 (418)
380 PRK12337 2-phosphoglycerate ki 42.3 19 0.0004 40.0 2.6 27 68-98 254-280 (475)
381 PRK09432 metF 5,10-methylenete 42.3 31 0.00068 35.4 4.1 112 354-480 168-292 (296)
382 TIGR03015 pepcterm_ATPase puta 42.3 19 0.00042 34.3 2.5 25 69-97 43-67 (269)
383 PRK14334 (dimethylallyl)adenos 42.1 71 0.0015 34.2 6.8 92 401-495 236-333 (440)
384 TIGR02880 cbbX_cfxQ probable R 42.1 15 0.00032 37.0 1.7 30 69-103 58-87 (284)
385 cd01857 HSR1_MMR1 HSR1/MMR1. 42.0 80 0.0017 27.8 6.1 33 449-481 41-73 (141)
386 cd01894 EngA1 EngA1 subfamily. 41.9 84 0.0018 26.5 6.0 35 443-480 98-132 (157)
387 COG0274 DeoC Deoxyribose-phosp 41.8 1E+02 0.0022 31.5 7.4 42 454-495 128-169 (228)
388 PF13555 AAA_29: P-loop contai 41.6 34 0.00073 28.0 3.4 43 44-97 5-47 (62)
389 TIGR02782 TrbB_P P-type conjug 41.6 36 0.00078 34.8 4.4 40 68-112 131-171 (299)
390 cd01832 SGNH_hydrolase_like_1 41.4 1.6E+02 0.0036 26.2 8.1 52 426-481 84-147 (185)
391 PRK08195 4-hyroxy-2-oxovalerat 41.3 91 0.002 32.6 7.3 52 438-489 116-167 (337)
392 PRK08760 replicative DNA helic 41.3 1.2E+02 0.0027 33.1 8.6 43 58-104 217-260 (476)
393 PLN02881 tetrahydrofolylpolygl 41.2 1.6E+02 0.0035 33.2 9.6 86 364-486 159-244 (530)
394 PRK14336 (dimethylallyl)adenos 40.9 1.3E+02 0.0028 32.1 8.5 131 349-483 157-308 (418)
395 cd01854 YjeQ_engC YjeQ/EngC. 40.9 73 0.0016 32.1 6.4 44 438-481 97-140 (287)
396 cd02019 NK Nucleoside/nucleoti 40.7 17 0.00036 28.9 1.5 17 81-97 7-23 (69)
397 cd01121 Sms Sms (bacterial rad 40.7 40 0.00086 35.8 4.6 45 58-107 69-115 (372)
398 cd00877 Ran Ran (Ras-related n 40.6 86 0.0019 28.0 6.2 40 441-481 96-135 (166)
399 PRK06995 flhF flagellar biosyn 40.6 24 0.00051 39.1 3.1 32 68-103 255-286 (484)
400 PF07005 DUF1537: Protein of u 40.6 17 0.00037 34.6 1.8 50 428-481 10-59 (223)
401 TIGR01125 MiaB-like tRNA modif 40.4 67 0.0014 34.1 6.3 82 402-486 235-322 (430)
402 PRK00421 murC UDP-N-acetylmura 40.4 31 0.00066 36.6 3.8 29 69-104 107-135 (461)
403 PRK13900 type IV secretion sys 40.4 27 0.00058 36.4 3.3 37 68-111 159-195 (332)
404 cd01861 Rab6 Rab6 subfamily. 40.2 89 0.0019 26.9 6.0 46 436-481 88-138 (161)
405 PRK13361 molybdenum cofactor b 40.1 86 0.0019 32.1 6.8 55 438-493 141-196 (329)
406 TIGR02173 cyt_kin_arch cytidyl 40.0 14 0.00031 32.6 1.1 24 71-98 2-25 (171)
407 cd04115 Rab33B_Rab33A Rab33B/R 39.9 58 0.0013 28.9 5.0 42 449-491 108-151 (170)
408 PRK09302 circadian clock prote 39.9 39 0.00086 36.4 4.6 41 67-112 29-71 (509)
409 TIGR00487 IF-2 translation ini 39.9 56 0.0012 36.8 5.9 37 442-479 179-215 (587)
410 KOG1533 Predicted GTPase [Gene 39.9 27 0.00059 36.4 3.1 31 81-112 10-40 (290)
411 PRK14489 putative bifunctional 39.9 33 0.00071 35.8 3.8 36 70-111 206-241 (366)
412 PRK00507 deoxyribose-phosphate 39.6 98 0.0021 30.7 6.9 31 464-494 134-164 (221)
413 smart00072 GuKc Guanylate kina 39.6 28 0.00061 32.2 3.0 48 68-119 1-48 (184)
414 smart00173 RAS Ras subfamily o 39.6 1E+02 0.0022 26.6 6.4 33 449-481 104-138 (164)
415 PF01695 IstB_IS21: IstB-like 39.4 25 0.00055 33.1 2.7 34 68-106 46-79 (178)
416 KOG1207 Diacetyl reductase/L-x 39.3 34 0.00073 34.5 3.6 36 68-112 6-41 (245)
417 TIGR02640 gas_vesic_GvpN gas v 38.9 23 0.00051 34.9 2.5 26 68-97 20-45 (262)
418 COG3265 GntK Gluconate kinase 38.8 15 0.00033 35.5 1.2 18 81-98 3-20 (161)
419 cd01120 RecA-like_NTPases RecA 38.7 37 0.00079 28.8 3.4 18 81-98 7-24 (165)
420 KOG3022 Predicted ATPase, nucl 38.7 29 0.00063 36.5 3.2 49 71-123 49-100 (300)
421 PRK09270 nucleoside triphospha 38.7 25 0.00055 33.7 2.7 27 68-98 32-58 (229)
422 cd04136 Rap_like Rap-like subf 38.7 89 0.0019 26.8 5.8 33 449-481 105-139 (163)
423 PRK12377 putative replication 38.6 26 0.00056 35.2 2.8 36 69-110 101-136 (248)
424 cd01393 recA_like RecA is a b 38.6 38 0.00082 31.7 3.7 28 66-97 16-43 (226)
425 PLN02199 shikimate kinase 38.4 21 0.00046 37.4 2.2 28 67-98 100-127 (303)
426 COG0572 Udk Uridine kinase [Nu 38.4 22 0.00047 35.7 2.2 26 69-98 8-33 (218)
427 TIGR01082 murC UDP-N-acetylmur 38.3 30 0.00065 36.5 3.4 28 69-103 99-126 (448)
428 PLN02200 adenylate kinase fami 38.3 29 0.00062 34.1 3.0 27 68-98 42-68 (234)
429 PRK11545 gntK gluconate kinase 38.3 16 0.00035 33.5 1.2 18 81-98 3-20 (163)
430 cd04176 Rap2 Rap2 subgroup. T 38.2 1E+02 0.0023 26.7 6.2 49 438-487 93-144 (163)
431 TIGR03217 4OH_2_O_val_ald 4-hy 38.2 1.1E+02 0.0024 32.1 7.3 52 438-489 115-166 (333)
432 TIGR00630 uvra excinuclease AB 37.9 20 0.00044 42.4 2.2 26 67-96 20-45 (924)
433 PRK01710 murD UDP-N-acetylmura 37.9 33 0.00071 36.5 3.6 31 69-106 117-147 (458)
434 PRK09825 idnK D-gluconate kina 37.9 27 0.00058 32.7 2.6 26 68-97 2-27 (176)
435 cd04127 Rab27A Rab27a subfamil 37.8 81 0.0018 27.9 5.5 59 436-497 102-166 (180)
436 COG1936 Predicted nucleotide k 37.3 18 0.0004 35.5 1.4 27 71-106 2-28 (180)
437 PRK14862 rimO ribosomal protei 37.2 81 0.0018 33.9 6.4 79 424-502 266-352 (440)
438 PRK08208 coproporphyrinogen II 37.2 94 0.002 33.2 6.8 81 402-486 144-228 (430)
439 COG3839 MalK ABC-type sugar tr 37.0 23 0.00049 37.6 2.2 21 67-91 27-47 (338)
440 cd04112 Rab26 Rab26 subfamily. 37.0 73 0.0016 29.2 5.2 39 448-487 104-144 (191)
441 COG0703 AroK Shikimate kinase 37.0 18 0.00039 35.1 1.3 24 70-98 4-27 (172)
442 TIGR01359 UMP_CMP_kin_fam UMP- 37.0 18 0.00039 32.7 1.3 23 72-98 2-24 (183)
443 cd00880 Era_like Era (E. coli 36.8 1.5E+02 0.0032 24.2 6.5 30 442-471 96-125 (163)
444 cd03283 ABC_MutS-like MutS-lik 36.6 41 0.00089 32.1 3.7 33 68-105 24-58 (199)
445 TIGR00157 ribosome small subun 36.6 1.1E+02 0.0023 30.3 6.7 87 364-481 5-99 (245)
446 PRK05283 deoxyribose-phosphate 36.6 1.3E+02 0.0028 30.9 7.4 45 450-494 131-175 (257)
447 TIGR01085 murE UDP-N-acetylmur 36.5 37 0.0008 36.0 3.7 32 68-106 84-115 (464)
448 cd00876 Ras Ras family. The R 36.5 99 0.0022 26.2 5.7 45 437-481 90-137 (160)
449 PRK05973 replicative DNA helic 36.3 46 0.001 33.4 4.1 41 67-112 62-103 (237)
450 PLN02540 methylenetetrahydrofo 36.3 35 0.00075 38.6 3.6 103 364-480 171-285 (565)
451 cd01918 HprK_C HprK/P, the bif 36.1 28 0.00061 32.7 2.5 39 68-110 13-51 (149)
452 PF05970 PIF1: PIF1-like helic 36.1 47 0.001 34.5 4.3 35 67-106 20-54 (364)
453 PRK05506 bifunctional sulfate 36.0 54 0.0012 36.7 5.0 42 439-480 145-193 (632)
454 PF00580 UvrD-helicase: UvrD/R 35.9 20 0.00043 34.3 1.4 26 454-479 259-284 (315)
455 smart00518 AP2Ec AP endonuclea 35.9 2.1E+02 0.0046 27.7 8.5 66 424-490 71-143 (273)
456 cd01879 FeoB Ferrous iron tran 35.9 86 0.0019 26.7 5.2 41 446-487 97-138 (158)
457 PRK11889 flhF flagellar biosyn 35.8 28 0.00062 38.2 2.7 35 69-108 241-275 (436)
458 COG0535 Predicted Fe-S oxidore 35.8 1.1E+02 0.0024 30.0 6.6 49 435-484 143-191 (347)
459 PRK08727 hypothetical protein; 35.8 27 0.00058 33.9 2.3 32 69-105 41-72 (233)
460 COG2313 IndA Uncharacterized e 35.7 69 0.0015 33.6 5.3 105 345-480 107-226 (310)
461 cd04169 RF3 RF3 subfamily. Pe 35.7 95 0.0021 31.1 6.2 22 441-462 114-135 (267)
462 TIGR02495 NrdG2 anaerobic ribo 35.6 85 0.0019 28.9 5.5 41 438-479 141-183 (191)
463 PRK04841 transcriptional regul 35.6 23 0.0005 39.7 2.1 50 59-116 22-71 (903)
464 COG0645 Predicted kinase [Gene 35.6 25 0.00053 34.3 2.0 25 70-98 2-26 (170)
465 PRK04182 cytidylate kinase; Pr 35.5 18 0.00039 32.1 1.0 23 71-97 2-24 (180)
466 TIGR01081 mpl UDP-N-acetylmura 35.4 29 0.00062 36.7 2.6 29 70-105 103-131 (448)
467 TIGR01499 folC folylpolyglutam 35.3 33 0.00071 35.6 3.0 37 70-114 19-55 (397)
468 smart00174 RHO Rho (Ras homolo 35.1 1.3E+02 0.0028 26.4 6.4 45 443-487 93-153 (174)
469 KOG0483 Transcription factor H 35.0 26 0.00056 34.7 2.1 44 183-229 50-94 (198)
470 PRK12402 replication factor C 34.9 28 0.0006 34.3 2.3 24 71-98 38-61 (337)
471 TIGR02666 moaA molybdenum cofa 34.7 1.2E+02 0.0027 30.7 6.9 49 436-485 138-187 (334)
472 PRK08691 DNA polymerase III su 34.6 9.6 0.00021 44.0 -1.0 58 188-245 160-217 (709)
473 PRK13826 Dtr system oriT relax 34.6 43 0.00093 40.7 4.2 36 68-108 396-431 (1102)
474 cd02027 APSK Adenosine 5'-phos 34.6 33 0.00072 31.0 2.6 25 81-106 7-31 (149)
475 PRK13758 anaerobic sulfatase-m 34.5 86 0.0019 32.1 5.8 49 436-485 143-191 (370)
476 cd01867 Rab8_Rab10_Rab13_like 34.5 1.1E+02 0.0024 27.0 5.8 41 449-489 107-149 (167)
477 cd01864 Rab19 Rab19 subfamily. 34.3 93 0.002 27.2 5.3 45 438-482 96-142 (165)
478 COG1082 IolE Sugar phosphate i 34.2 2.2E+02 0.0048 27.1 8.2 61 426-487 73-146 (274)
479 cd01124 KaiC KaiC is a circadi 34.0 35 0.00077 30.6 2.7 30 72-106 2-31 (187)
480 COG0541 Ffh Signal recognition 34.0 31 0.00068 38.1 2.7 34 70-108 101-134 (451)
481 TIGR01969 minD_arch cell divis 33.9 1.3E+02 0.0028 28.4 6.5 65 362-463 108-173 (251)
482 CHL00071 tufA elongation facto 33.9 82 0.0018 33.3 5.7 43 438-480 115-163 (409)
483 TIGR00089 RNA modification enz 33.9 94 0.002 32.9 6.1 78 403-483 240-323 (429)
484 cd04168 TetM_like Tet(M)-like 33.8 89 0.0019 30.7 5.6 44 438-481 104-147 (237)
485 COG1484 DnaC DNA replication p 33.7 34 0.00074 34.2 2.7 39 68-112 104-142 (254)
486 COG2866 Predicted carboxypepti 33.6 24 0.00052 37.6 1.8 93 116-243 135-240 (374)
487 PRK13894 conjugal transfer ATP 33.5 55 0.0012 34.0 4.3 41 68-112 147-187 (319)
488 PRK13209 L-xylulose 5-phosphat 33.5 2E+02 0.0044 28.0 8.0 60 427-488 89-159 (283)
489 cd04123 Rab21 Rab21 subfamily. 33.4 1.1E+02 0.0025 25.9 5.5 41 446-486 101-143 (162)
490 COG2403 Predicted GTPase [Gene 33.4 37 0.0008 37.3 3.1 36 74-111 128-163 (449)
491 TIGR00682 lpxK tetraacyldisacc 33.4 33 0.00072 35.6 2.7 39 69-110 28-66 (311)
492 PF09848 DUF2075: Uncharacteri 33.3 42 0.00091 34.5 3.4 37 70-111 2-40 (352)
493 TIGR02236 recomb_radA DNA repa 33.0 33 0.00071 34.4 2.5 27 67-97 93-119 (310)
494 cd03280 ABC_MutS2 MutS2 homolo 33.0 46 0.00099 31.2 3.3 30 69-103 28-59 (200)
495 smart00487 DEXDc DEAD-like hel 33.0 61 0.0013 27.8 3.9 24 70-97 25-48 (201)
496 PRK10773 murF UDP-N-acetylmura 32.9 38 0.00083 36.0 3.1 32 66-104 97-128 (453)
497 PRK06893 DNA replication initi 32.9 32 0.00069 33.3 2.3 30 71-105 41-70 (229)
498 PRK00349 uvrA excinuclease ABC 32.9 34 0.00074 40.7 3.0 26 67-96 24-49 (943)
499 PF07517 SecA_DEAD: SecA DEAD- 32.8 27 0.00059 35.6 1.9 49 68-123 91-150 (266)
500 TIGR01579 MiaB-like-C MiaB-lik 32.8 1.2E+02 0.0025 32.0 6.6 79 402-483 238-322 (414)
No 1
>PLN02759 Formate--tetrahydrofolate ligase
Probab=100.00 E-value=2.2e-236 Score=1842.86 Aligned_cols=496 Identities=88% Similarity=1.331 Sum_probs=487.4
Q ss_pred CCCCcCcccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCC
Q 010562 4 SKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLG 83 (507)
Q Consensus 4 ~~~~~~~~~~~pm~sDieIa~~~~~~~I~~iA~~lGi~~~~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~G 83 (507)
+.+-.+++++.||||||||||+++++||++||+++||++|+|||||+|||||+++++++++++|+|||||||||||||+|
T Consensus 4 ~~~~~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKi~l~~l~~~~~~~~gklIlVTaitPTP~G 83 (637)
T PLN02759 4 SSSRRKLEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVRDRLAGAPDGYYVVVAGITPTPLG 83 (637)
T ss_pred cCCCCCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCChhhhccCCCcceEEcHHHHhhhccCCCCcEEEEEecCCCCCC
Confidence 44455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhh
Q 010562 84 EGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTR 163 (507)
Q Consensus 84 EGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLlaA~iDn~ 163 (507)
||||||||||+|||++|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+||||
T Consensus 84 EGKTTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~ 163 (637)
T PLN02759 84 EGKSTTTIGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDTR 163 (637)
T ss_pred CCchhHHHHHHHHHHHHhCCeeEEEeecCCcCCcCCcccccCCCcccccccHhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999756999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccc
Q 010562 164 IFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLR 243 (507)
Q Consensus 164 i~h~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR 243 (507)
|||+|+|+|++||+||||..++|||+|+|+|+|||+||||+|+|||+||||||++|++|+|||++|+|+||||||||+||
T Consensus 164 i~~~n~~~~~~l~~~l~p~~~~~~r~~~~~~~~rl~~l~i~~~~p~~lt~~e~~~~~~L~IDp~~I~w~RvlD~NDR~LR 243 (637)
T PLN02759 164 VFHEATQSDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMDVNDRFLR 243 (637)
T ss_pred HhhccccchhhhhhccccccccccccccHHHHHHHHhhccCcCCccccCHHHhhhhhccCcCcceeEEEeeccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCCcceecceeEeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcc
Q 010562 244 KITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPT 323 (507)
Q Consensus 244 ~I~iGlg~~~~G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPN 323 (507)
+|+||+|+++||+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+|+||||+|||||||||
T Consensus 244 ~I~vGlgg~~~G~~Re~gFdITvASEiMAILcLa~dl~Dlk~Rlg~ivvg~~~~g~pVta~DL~~~GAmt~LLkDAikPN 323 (637)
T PLN02759 244 KITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPVTADDLGVGGALTVLMKDAIHPT 323 (637)
T ss_pred ceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHhHHHHHHhhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeeh
Q 010562 324 LMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIR 403 (507)
Q Consensus 324 LvQTlEgtPa~VHgGPFANIAHG~nSviAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvR 403 (507)
||||+||||||||||||||||||||||||||+||||+|.+||||||||||||||||||||||||++||+|||+|||||||
T Consensus 324 LvQTlEgtPa~vHgGPFANIAhG~nSviAtk~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~~gl~P~a~VlVaTvR 403 (637)
T PLN02759 324 LMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVATVR 403 (637)
T ss_pred ceeecCCCceEEecCCcccccccchHHHHHHHHHhhcCCCCeEEEecccCCCCchhheecccccccCCCCCEEEEEeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeE
Q 010562 404 ALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDA 483 (507)
Q Consensus 404 ALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~ 483 (507)
|||||||++.+++|+|||++|.+||+++|++||+||.|||||+++||+|||||||+|++||++||++|+++|+++|+.++
T Consensus 404 ALK~hGG~~~~~pg~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~ 483 (637)
T PLN02759 404 ALKMHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGAFDA 483 (637)
T ss_pred HHHhcCCCCcccCCccchhhhcccCHHHHHhhhhhHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996459
Q ss_pred EEcccccccCcCcccC
Q 010562 484 VVCSHHAHGGKGAVSD 499 (507)
Q Consensus 484 ~~~~~wa~GG~Ga~~~ 499 (507)
++|+||++||+|++|+
T Consensus 484 ~~~~~wa~GGeGa~eL 499 (637)
T PLN02759 484 VLCTHHAHGGKGAVDL 499 (637)
T ss_pred EEechhhcccHHHHHH
Confidence 9999999999999875
No 2
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=100.00 E-value=6.8e-231 Score=1798.52 Aligned_cols=481 Identities=67% Similarity=1.022 Sum_probs=471.0
Q ss_pred CcCcccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCc
Q 010562 7 VRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGK 86 (507)
Q Consensus 7 ~~~~~~~~pm~sDieIa~~~~~~~I~~iA~~lGi~~~~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGK 86 (507)
..+++++.||||||||||+++++||++||+++||++|||||||+|||||++++++|++++|+|||||||||||||+||||
T Consensus 6 ~~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKv~l~~~~~~~~~~~gklIlVTaitPTP~GEGK 85 (625)
T PTZ00386 6 TRKLSCQWPVPSDIDIAQSVKPQPITSVAESAGILLSELDPYGSTRAKVKLSVLKRLENSPNGKYVVVAGMNPTPLGEGK 85 (625)
T ss_pred CCCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCCHHHHHhcCCcceecCHHHHHhhccCCCCcEEEEeecCCCCCCCCc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhc
Q 010562 87 STTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFH 166 (507)
Q Consensus 87 TTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLlaA~iDn~i~h 166 (507)
|||||||+|||++|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||
T Consensus 86 tTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~HAItaA~NLlaA~iDn~i~~ 165 (625)
T PTZ00386 86 STTTIGLAQSLGAHLHRKTFACIRQPSQGPTFGIKGGAAGGGYSQVIPMEDFNLHGTGDIHAITAANNLLAAALDTRIFH 165 (625)
T ss_pred cchhhhhHHHHHHHhCcceEEEEecCCcCCcCCcccccCCCccccccchhhccccccchHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999659999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccceee
Q 010562 167 EASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKIT 246 (507)
Q Consensus 167 ~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~ 246 (507)
||+|+|++||+||| +|+|+|+|+|+|||+||||.|+||++|||||+++|++|+|||++|+|+||||||||+||+|+
T Consensus 166 ~n~~~d~~l~~~l~----~~~r~~~~~~~~rl~~lgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~ 241 (625)
T PTZ00386 166 ERTQSDAALYRRLT----DELKKFTPIMLKRLEKLGISKTDPKQLTEEERVRFARLDIDPDTISWRRVTDVNDRMLREIT 241 (625)
T ss_pred ccccchhHHHhhhc----cccccccHHHHHHHHhhccCcCCccccCHHHhhhhhhcCcCcceeEEEeeccccchhhhcee
Confidence 99999999999999 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceecceeEeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccce
Q 010562 247 IGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQ 326 (507)
Q Consensus 247 iGlg~~~~G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQ 326 (507)
||+|++++|+|||||||||||||||||||||+|++|||+|||||||||++||+||||+||+|+||||+||||||||||||
T Consensus 242 vGlG~~~~G~~Re~gFdITvASEiMAIl~La~dl~Dlr~Rlg~ivva~~~~g~pVta~DL~~~GAmt~LLkDAikPNLvQ 321 (625)
T PTZ00386 242 IGQGKEEKGITRKTGFDISVASEVMAILALATDLADMRQRLGAIVVAKSKSGEPVTAEDLGCAGAMTVLMKDTIEPTLMQ 321 (625)
T ss_pred eCcCCCCCCCcccCCceeEHHHHHHHHHHHhCCHHHHHHHHhceeeeecCCCCceeHHHcCchHHHHHHHHhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHH
Q 010562 327 TLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALK 406 (507)
Q Consensus 327 TlEgtPa~VHgGPFANIAHG~nSviAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK 406 (507)
|+|||||||||||||||||||||||||++||||+|.+||||||||||||||||||||||||+|||+||||||||||||||
T Consensus 322 TlEgtPa~VHgGPFANIAhG~nSviAt~~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~sgl~P~a~VlVaTvRALK 401 (625)
T PTZ00386 322 TLEGTPVLVHAGPFGNIAHGNSSIVADQIALKLAGQDGFVLTEAGFGADIGCEKFFNIKCRTSGLKPDAAVLVATVRALK 401 (625)
T ss_pred ecCCCceEEecCCcchhhcccHHHHHHHHHHHhCCCCCeEEEeccccCCCCchhhccccccccCCCcCEEEEEeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHH-HcCCCeEEE
Q 010562 407 MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAM-AAGAFDAVV 485 (507)
Q Consensus 407 ~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~-~~g~~~~~~ 485 (507)
||||+++.. +.+||+++|++||+||.|||||+++||+|||||||+|++||++|+++|+++|+ ++|+.++++
T Consensus 402 ~hGG~~~~~--------l~~enl~al~~G~~NL~~Hien~~~fgvpvVVAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~~ 473 (625)
T PTZ00386 402 FHGGVEPVV--------AGKENLEAVRKGLSNLQRHIQNIRKFGVPVVVALNKFSTDTDAELELVKELALQEGGAADVVV 473 (625)
T ss_pred HhCCCCccc--------cCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHhcCCccEEE
Confidence 999998754 55799999999999999999999999999999999999999999999999999 999645999
Q ss_pred cccccccCcCcccC
Q 010562 486 CSHHAHGGKGAVSD 499 (507)
Q Consensus 486 ~~~wa~GG~Ga~~~ 499 (507)
|+||++||+|++|+
T Consensus 474 s~~~a~GG~Ga~eL 487 (625)
T PTZ00386 474 TDHWAKGGAGAVDL 487 (625)
T ss_pred echhhccchhHHHH
Confidence 99999999999875
No 3
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=1.6e-218 Score=1698.08 Aligned_cols=445 Identities=53% Similarity=0.826 Sum_probs=436.9
Q ss_pred ccCCCCCChHHHHccCC--CCCHHHHHHHcCCCCcchhcccCceeeecch-hhhhccCCCCCcEEEEeecCCCCCCCCcc
Q 010562 11 QVVSPVPADIDIANSVE--PLHISEIAQELNLKPNHYDLYGKYKAKVLLS-VLDELEGSADGYYVVVGGITPTPLGEGKS 87 (507)
Q Consensus 11 ~~~~pm~sDieIa~~~~--~~~I~~iA~~lGi~~~~le~YG~~kAKi~l~-~l~~~~~~~~GKlIlVTaitPTP~GEGKT 87 (507)
++++|+||||||||+++ ++||++||+++||++|+|||||+|||||+++ ++++++++|+|||||||||||||+|||||
T Consensus 2 ~~~~~~~sdieIa~~~~~~~~~I~~ia~~lgl~~~~le~YG~~kAKi~l~~~l~~~~~~~~gklIlVTaitPTP~GEGKt 81 (587)
T PRK13507 2 ALDPTKMKDWEIAEEAEKFMKPVEELAEELGLTKEELLPYGHYIAKVDFRKVLDRLKDRPDGKYIDVTAITPTPLGEGKS 81 (587)
T ss_pred CCCCCCCCHHHHHHhhhccCCCHHHHHHHcCCCHHHHHhcCCcceeecHHHHHHhhccCCCCeEEEEeccCCCCCCCCcc
Confidence 45779999999999999 8899999999999999999999999999998 89999988999999999999999999999
Q ss_pred hhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhcc
Q 010562 88 TTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHE 167 (507)
Q Consensus 88 TttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLlaA~iDn~i~h~ 167 (507)
||||||+|||+ ++||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||+
T Consensus 82 TttIGL~~aL~-~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAitaA~NLlaA~idn~i~~~ 160 (587)
T PRK13507 82 TTTMGLVQGLG-KRGKKVSGAIRQPSGGPTMNIKGSAAGGGLSQCIPLTPFSLGLTGDINAIMNAHNLAMVALTARMQHE 160 (587)
T ss_pred chhhhHHHHHH-hhcCceEEEEecCCcCCcCCcccccCCCccccccchhhccccccChHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999995 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccceeee
Q 010562 168 ASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITI 247 (507)
Q Consensus 168 n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~i 247 (507)
|+|+|++|+.| .|++|+|||++|+|+||||||||+||+|+|
T Consensus 161 n~~~~~~l~~~---------------------------------------~~~~L~IDp~~I~w~RvlD~NDR~LR~I~v 201 (587)
T PRK13507 161 RNYTDEQLARR---------------------------------------GLKRLDIDPTRVEMGWIIDFCAQALRNIII 201 (587)
T ss_pred Cccccchhhcc---------------------------------------cccccCCCcceeeEeecccccchhhhceee
Confidence 99999998754 367999999999999999999999999999
Q ss_pred ccCCCCCCcceecceeEeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCccccee
Q 010562 248 GQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQT 327 (507)
Q Consensus 248 Glg~~~~G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQT 327 (507)
|+|+++||+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||
T Consensus 202 GlG~~~~G~~Re~gFdITvASEiMAIlcLa~~l~Dlk~Rlg~ivva~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQT 281 (587)
T PRK13507 202 GIGGKTDGYMMQSGFGIAVSSEVMAILSVATDLKDLRERIGKIVVAYDKNGKPVTTADLEVDGAMTAWMVRAINPNLLQT 281 (587)
T ss_pred CcCCCCCCccccCCceeeHHHHHHHHHHHcCCHHHHHHHHhcEEEEEcCCCCeeeHHhccchHhHHHHHHhhcCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHh
Q 010562 328 LEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKM 407 (507)
Q Consensus 328 lEgtPa~VHgGPFANIAHG~nSviAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~ 407 (507)
|||||||||||||||||||||||||||+||||+ ||||||||||||||||||||||||.+|++|||+|||||||||||
T Consensus 282 lEgtPa~vHgGPFANIAHG~nSviAt~~ALkla---dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~ 358 (587)
T PRK13507 282 IEGQPVFVHAGPFANIAIGQSSIIADRVGLKLA---DYHVTESGFGADIGFEKFWNLKCRLSGLKPDCAVIVATIRALKM 358 (587)
T ss_pred cCCCceEEecCCcchhhcccHHHHHHHHHHhcC---CeEEeccccCCCCChhheeeeeccccCCCCCEEEEEeEhHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcc
Q 010562 408 HGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 408 HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
|||++...+|+|||++|.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|++.|+. +++|+
T Consensus 359 hgG~~~~~~g~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~-~~v~~ 437 (587)
T PRK13507 359 HGGGPKVVPGKPLPEEYTKENVGLVEKGCANLLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGAR-VAVSR 437 (587)
T ss_pred cCCCCccccCCccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCC-EEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 89999
Q ss_pred cccccCcCcccC
Q 010562 488 HHAHGGKGAVSD 499 (507)
Q Consensus 488 ~wa~GG~Ga~~~ 499 (507)
||++||+|++|+
T Consensus 438 ~wa~GGeGa~eL 449 (587)
T PRK13507 438 HWEKGGEGALEL 449 (587)
T ss_pred hhhccchhHHHH
Confidence 999999999875
No 4
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4.2e-214 Score=1662.77 Aligned_cols=491 Identities=67% Similarity=1.064 Sum_probs=485.6
Q ss_pred CcCcccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCc
Q 010562 7 VRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGK 86 (507)
Q Consensus 7 ~~~~~~~~pm~sDieIa~~~~~~~I~~iA~~lGi~~~~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGK 86 (507)
+.+|.+++|+||||||||+++|++|.++|+++||.++|||.||+|||||++++++||+.+++||||+||+|||||+||||
T Consensus 303 ~~pl~l~tpvpsdidisrsq~pk~i~~la~e~gi~s~ele~yg~~kakv~l~v~erl~hr~dg~yvvvsgitptp~gegk 382 (935)
T KOG4230|consen 303 LLPLKLKTPVPSDIDISRSQEPKLIGQLAKELGIYSHELELYGHYKAKVNLAVLERLKHRKDGKYVVVSGITPTPLGEGK 382 (935)
T ss_pred CCccccCCCCCcccchhhccCcchHHHHHHHhchhhHHHHhhcchhhhcCHHHHHHHhccCCCcEEEEeccCCCCCCCCc
Confidence 45667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhc
Q 010562 87 STTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFH 166 (507)
Q Consensus 87 TTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLlaA~iDn~i~h 166 (507)
||||+||.|||+ +|||.+++|+||||+|||||+|||||||||||||||||||||+||||||||||||||||+||+||||
T Consensus 383 st~t~glvqal~-~l~k~~iacvrqpsqgptfgvkggaagggysq~ipmdefnlhltgdihaitaannllaaaidtrmfh 461 (935)
T KOG4230|consen 383 STTTAGLVQALG-ALGKLAIACVRQPSQGPTFGVKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRMFH 461 (935)
T ss_pred chhHHHHHHHHH-hhCCcceeeecCCCcCCccccccccCCCccceeeehhhcccccccchhhhhhhhHHHHHHHHHHHHh
Confidence 999999999997 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccceee
Q 010562 167 EASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKIT 246 (507)
Q Consensus 167 ~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~ 246 (507)
||||+|++||+||+| .|+|+|+|+|+|+|||+||||+|+||++|||||+++|.||||||++|+|+||+|+|||+||+|+
T Consensus 462 e~tq~daal~krlvp-~kng~r~f~~~m~rrlkrl~i~k~dp~~lt~ee~~~farlnidpdtit~~rvldvndrflr~it 540 (935)
T KOG4230|consen 462 ENTQSDAALYKRLVP-VKNGKRKFTPSMIRRLKRLGIEKTDPEDLTPEEIKKFARLNIDPDTITINRVLDVNDRFLRQIT 540 (935)
T ss_pred hcccchHHHHHhhcc-ccCCeeecCHHHHHHHHHhccccCCcccCCHHHHHHhHcccCCCCeeEEEEEeccchhhhhhee
Confidence 999999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceecceeEeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccce
Q 010562 247 IGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQ 326 (507)
Q Consensus 247 iGlg~~~~G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQ 326 (507)
||+.++++|++|.+||||||||||||||+||+||.|||+||||||||.+++|+||||+||||+||+|+||||||||||||
T Consensus 541 ig~a~tekg~tr~t~fdisvase~mailals~dl~dm~erlgrmvva~dk~g~pvtaedlgv~galtvllkdaikpnlmq 620 (935)
T KOG4230|consen 541 IGQAPTEKGHTRTTGFDISVASECMAILALSKDLNDMKERLGRMVVAADKYGEPVTAEDLGVSGALTVLLKDAIKPNLMQ 620 (935)
T ss_pred cccCccccCcccccccceehHHHHHHHHHHhccHHHHHHHhhcEEEeecCCCCcccHHhcCcchhHHHHHHhhcchhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCceeEEcccccchhcccCchHHHHHHHHHhcCCCC------eEEeecccccccccccccccccccCCCCcceEEEEe
Q 010562 327 TLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGG------FVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVA 400 (507)
Q Consensus 327 TlEgtPa~VHgGPFANIAHG~nSviAtk~ALkLag~~d------yVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVa 400 (507)
||||||+|||+||||||+||.||||||++||||+|++. ||||||||++|||+|||||||||+|||.||+|||||
T Consensus 621 tlegtpv~vhagpfanisigassiiadrialklvgte~~~keagyvvteagf~~dmgmekffnikcr~sgl~p~avvlva 700 (935)
T KOG4230|consen 621 TLEGTPVFVHAGPFANISIGASSIIADRIALKLVGTESRPKEAGYVVTEAGFASDMGMEKFFNIKCRYSGLVPNAVVLVA 700 (935)
T ss_pred hccCCeeEEecccccccccchHHHHHHHHHHHhcCCCCCcccCceEEEecccccccchhheeeeeeecCCCCCceEEEee
Confidence 99999999999999999999999999999999999985 999999999999999999999999999999999999
Q ss_pred eehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCC
Q 010562 401 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGA 480 (507)
Q Consensus 401 TvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~ 480 (507)
||||||+|||+|.++||+|||++|.+||+|.+++||+||.|||+|+++||+|||||||+|.+||+.||+.|++.+.++|+
T Consensus 701 tvralk~hgggp~v~pg~plp~~y~~en~dlv~kg~snl~k~i~n~~~fgipvvvain~f~tds~~ei~~ir~~al~aga 780 (935)
T KOG4230|consen 701 TVRALKLHGGGPKVKPGQPLPEEYTEENLDLVEKGCSNLVKQIENIKKFGIPVVVAINKFKTDSEKEIEAIREAALEAGA 780 (935)
T ss_pred hhHHHHhcCCCCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHhHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEcccccccCcCcccC
Q 010562 481 FDAVVCSHHAHGGKGAVSD 499 (507)
Q Consensus 481 ~~~~~~~~wa~GG~Ga~~~ 499 (507)
++++-|+||++||+||+++
T Consensus 781 ~dav~snhwaeggkgai~l 799 (935)
T KOG4230|consen 781 FDAVTSNHWAEGGKGAIEL 799 (935)
T ss_pred cccccccchhhcCccHHHH
Confidence 9999999999999999874
No 5
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=100.00 E-value=5e-214 Score=1664.87 Aligned_cols=419 Identities=58% Similarity=0.940 Sum_probs=355.1
Q ss_pred CCChHHHHccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 16 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 16 m~sDieIa~~~~~~~I~~iA~~lGi~~~~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
|||||||||+++++||++||+++||++|||||||+|||||++++++|++++++|||||||||||||+|||||||||||+|
T Consensus 1 m~sd~~ia~~~~~~~i~~ia~~~gl~~~~~~~yG~~kaKi~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~ 80 (557)
T PF01268_consen 1 MKSDIEIAQSAKLKPIEEIAEKLGLPEDDLEPYGRYKAKIDLSVLERLKDKPDGKLILVTAITPTPAGEGKTTTTIGLAQ 80 (557)
T ss_dssp --GGSTTTCTT----HHHHHHCTT--GGGEEEETTTEEEE-TCHHHHTTTS---EEEEEEESS--TTS-SHHHHHHHHHH
T ss_pred CCCHHHHHhcCCCCCHHHHHHHcCCCHHHHHhcCCCCcEeChHHHhhccccCCCcEEEEEecCCCCCCCCceeHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHh
Q 010562 96 ALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKAL 175 (507)
Q Consensus 96 aL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLlaA~iDn~i~h~n~~~~~~l 175 (507)
|| +|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||+|
T Consensus 81 al-~~lg~~~~~~lRePSlGP~fG~KGGAaGGG~sqv~Pme~iNLhfTGD~hAIt~A~NLlaA~idn~i~~gn------- 152 (557)
T PF01268_consen 81 AL-NRLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDFHAITAANNLLAAMIDNHIYHGN------- 152 (557)
T ss_dssp HH-HHTT--EEEEE----CHHHHCST-STTCETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTS-------
T ss_pred HH-HhcCCceEEEEecCCCCCccCccccccCCceeEEechHHeeccccCcHHHHHHHHHHHHHHHHHHHhccc-------
Confidence 99 6999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccceeeeccCCCCCC
Q 010562 176 FNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKG 255 (507)
Q Consensus 176 ~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G 255 (507)
+|+|||++|+|+||||||||+||+|+||+|++.||
T Consensus 153 ---------------------------------------------~l~iDp~~I~w~Rv~D~NDR~LR~i~iglg~~~~G 187 (557)
T PF01268_consen 153 ---------------------------------------------ELNIDPRRITWKRVLDMNDRALRNIVIGLGGKANG 187 (557)
T ss_dssp ---------------------------------------------TT-EECCCE---EEESS--GGGSSEEESTSSCCC-
T ss_pred ---------------------------------------------cCCCCcceeeeeeeccccchhhhheeeCCCCCCCC
Confidence 69999999999999999999999999999999999
Q ss_pred cceecceeEeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEE
Q 010562 256 MVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLV 335 (507)
Q Consensus 256 ~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~V 335 (507)
+|||+|||||||||+|||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||||||||||
T Consensus 188 ~~r~~~FdIT~ASEiMAilcLa~~l~Dlk~Rl~~ivv~~~~~~~pvta~dl~~~Gam~~LLkdAikPNLvQTlEgtPa~v 267 (557)
T PF01268_consen 188 VPREDGFDITVASEIMAILCLATDLEDLKERLGRIVVAYTKDGKPVTAEDLGAAGAMTALLKDAIKPNLVQTLEGTPAFV 267 (557)
T ss_dssp --EEE-EEEGGGSHHHHHHHC-SSHHHHHHHHHC-EEEEETTS-EEECHHHT-HHHHHHHTTTTTS-EEEEETTS-EEEE
T ss_pred CcccCceeeEechhhheehhhhcCHHHHHHHHhCEEEEEcCCCCeEEHHHcCCcHhHHHHHHhhcCchhhhhcccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhcccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCcc
Q 010562 336 HAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVV 415 (507)
Q Consensus 336 HgGPFANIAHG~nSviAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~ 415 (507)
|||||||||||||||||||+||||+ ||||||||||||||||||||||||++||+||||||||||||||||||++.
T Consensus 268 HgGPFANIAhG~nSviAt~~al~l~---dyvvTEAGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~-- 342 (557)
T PF01268_consen 268 HGGPFANIAHGCNSVIATKMALKLA---DYVVTEAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVAK-- 342 (557)
T ss_dssp -----SSSS--B--HHHHHHHHHHS---SEEEEEBSSSTTTHHHHHHHTHHHHHT---SEEEEEEEHHHHHHHTT--G--
T ss_pred eccccccccccCchHHHHHHHHhhc---ceeecccccccccChhhhcCccchhcccCcceEEEeeechHHHhhcCCCc--
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999975
Q ss_pred CCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcC
Q 010562 416 AGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 416 ~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
++|.+||+++|++||+||+|||||+++||+|||||||+|++||++||++|+++|+++|++ +++|+||++||+|
T Consensus 343 ------~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~-~avs~~wa~GGeG 415 (557)
T PF01268_consen 343 ------DDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAEIELIRELCEELGVR-AAVSEHWAKGGEG 415 (557)
T ss_dssp ------GGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHHHHHHHHHCCCCCEE-EEEC-HHHHGGGG
T ss_pred ------cccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHHHhCCCC-EEEechhhccccc
Confidence 679999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred cccC
Q 010562 496 AVSD 499 (507)
Q Consensus 496 a~~~ 499 (507)
++|+
T Consensus 416 a~eL 419 (557)
T PF01268_consen 416 AVEL 419 (557)
T ss_dssp CHHH
T ss_pred HHHH
Confidence 9875
No 6
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.4e-210 Score=1604.25 Aligned_cols=417 Identities=57% Similarity=0.917 Sum_probs=412.6
Q ss_pred ChHHHHccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 18 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 18 sDieIa~~~~~~~I~~iA~~lGi~~~~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|||||||+++++||.+||+++||+.|+||+||+|||||+++++++++++++|||||||||||||+|||||||||||+|||
T Consensus 1 sDieIa~~~~~k~I~~ia~k~Gl~~d~lelYG~ykAKi~~~~~~~l~~k~~gKlILVTaitPTPaGEGKsTttiGL~~al 80 (554)
T COG2759 1 SDIEIARAATMKPIEEIAEKLGLSADDLELYGHYKAKISLEVIKRLKNKPDGKLILVTAITPTPAGEGKTTTTIGLVDAL 80 (554)
T ss_pred ChhhhhhhcccccHHHHHHHcCCCHHHhhhccchhhhcCHHHHHhhccCCCceEEEEEecCCCCCCCCcceeeehHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhh
Q 010562 98 GAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFN 177 (507)
Q Consensus 98 ~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLlaA~iDn~i~h~n~~~~~~l~~ 177 (507)
+++||++++|||||||||||||||||||||||||+|||||||||||||||||+|||||+|+|||||||||
T Consensus 81 -~~lgK~~i~alRePSlGP~fGiKGGAaGGGyaqv~PmediNLHfTGD~HAItaAnNllsA~Idnhi~~gn--------- 150 (554)
T COG2759 81 -NKLGKKAIIALREPSLGPVFGIKGGAAGGGYAQVLPMEDINLHFTGDFHAITAANNLLSAAIDNHIYHGN--------- 150 (554)
T ss_pred -HhcCchheEEeccCCcCCccccccccCCCceeeeeehhhccccccCchhHHHHHHHHHHHHHHhhhhcCc---------
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccceeeeccCCCCCCcc
Q 010562 178 RLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMV 257 (507)
Q Consensus 178 rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G~~ 257 (507)
+|+|||+||+||||||||||+||+|+||+|++.||+|
T Consensus 151 -------------------------------------------~l~ID~~rI~wkRv~DmNDRaLR~I~vglg~~~~G~~ 187 (554)
T COG2759 151 -------------------------------------------ELGIDPRRITWKRVVDMNDRALRSIVVGLGGPENGVP 187 (554)
T ss_pred -------------------------------------------ccCcCcceEEEEeeeccchhhhhheeeccCCccCCcc
Confidence 7999999999999999999999999999999999999
Q ss_pred eecceeEeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEEcc
Q 010562 258 RETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHA 337 (507)
Q Consensus 258 re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHg 337 (507)
||||||||||||||||||||+|+.|||+|||||||||++||+|||++||+++||||+||||||||||||||||||+||||
T Consensus 188 RedgFdITvASEiMAIlcLa~dlkDlk~Rl~~iviay~~~~~PV~~~Dl~~~GAma~lLkDAikPNLvQTlEgtPa~VHg 267 (554)
T COG2759 188 REDGFDITVASEIMAILCLATDLKDLKERLGRIVIAYDYDGKPVTAGDLKVEGAMAALLKDAIKPNLVQTLEGTPAFVHG 267 (554)
T ss_pred cCCCceeehHHHHHHHHHHhhhHHHHHHHHhheEEEEecCCCceeeeccccchHHHHHHHhhccccceeecCCCceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhcccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCC
Q 010562 338 GPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAG 417 (507)
Q Consensus 338 GPFANIAHG~nSviAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g 417 (507)
||||||||||||||||++||||+ ||||||||||||||||||||||||.+||+||||||||||||||||||+++
T Consensus 268 GPFANIAhGcnSiiAt~~AlkL~---dy~VTEAGFgaDlGaEKF~dIK~r~~gl~PdavVlVATvRALK~hGG~~~---- 340 (554)
T COG2759 268 GPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFFDIKCRSSGLKPDAVVLVATVRALKMHGGVPK---- 340 (554)
T ss_pred CccchhhccchhHHHHHHHHhhc---CeEEEecccccccchhhhcceeccccCCCCCeEEEeeehHHHHHcCCCCh----
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999985
Q ss_pred CCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcCcc
Q 010562 418 KPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAV 497 (507)
Q Consensus 418 ~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~ 497 (507)
++|.+||+|+|++||+||.|||+|+|+||||||||||+|++||++||+.|+++|++.|++ +++|+||++||+|++
T Consensus 341 ----~~l~~Env~avk~G~aNL~~Hi~Nikkfgvp~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~-~~ls~vwakGg~Gg~ 415 (554)
T COG2759 341 ----EDLTEENVDAVKKGFANLLKHIENIKKFGVPVVVAINKFPTDTEAEIAAIEKLCEEHGVE-VALSEVWAKGGEGGI 415 (554)
T ss_pred ----HHhcchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccCCCCCHHHHHHHHHHHHHcCCc-eeehhhhhccCccHH
Confidence 899999999999999999999999999999999999999999999999999999999997 999999999999998
Q ss_pred cC
Q 010562 498 SD 499 (507)
Q Consensus 498 ~~ 499 (507)
|+
T Consensus 416 eL 417 (554)
T COG2759 416 EL 417 (554)
T ss_pred HH
Confidence 74
No 7
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=8.5e-208 Score=1618.29 Aligned_cols=441 Identities=55% Similarity=0.855 Sum_probs=432.0
Q ss_pred CCChHHHHccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 16 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 16 m~sDieIa~~~~~~~I~~iA~~lGi~~~~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
|+|||||||+++++||++||+++||++|||||||+|||||+++++++++++|+||||+||+++|||+||||||||+||+|
T Consensus 1 m~sdieia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~ 80 (578)
T PRK13506 1 MLSDIEISRQAPLKPIAEIAAKLGLLPDELSPFGHTKAKVSLSVLKRLADKPKGKLVLVTAITPTPLGEGKTVTTIGLTQ 80 (578)
T ss_pred CCchHHHHhhCCCCCHHHHHHHcCCCHHHHhhcCCcceecCHHHHHhhccCCCCeEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHh
Q 010562 96 ALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKAL 175 (507)
Q Consensus 96 aL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLlaA~iDn~i~h~n~~~~~~l 175 (507)
+| +++|++++.|||||||||+||+||||+|||||||+|||||||||||||||||||||||||+|||||||+|.++|++|
T Consensus 81 ~l-a~~Gk~~i~~LR~Pslg~~fg~kgga~GGGlsqvlpme~iNLHfTGD~hAItaA~NLlaA~iDn~i~~gn~~~~~~~ 159 (578)
T PRK13506 81 GL-NALGQKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMEELNLHLTGDIHAVSAAHNLAAAAIDARLFHEQRLGYDAF 159 (578)
T ss_pred HH-HHhCCceEEEeccCCcCCccCCCCCCCCCCeeeeeeHhhccccccChHHHHHHHHHHHHHHHHHHHhccCccCccch
Confidence 99 59999999999999999999999999999999999999999999999999999999999999999999998776552
Q ss_pred hhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccceeeeccCCCCCC
Q 010562 176 FNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKG 255 (507)
Q Consensus 176 ~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G 255 (507)
+|+++|++|+|||++|+|+||||||||+||+|+||+|+++||
T Consensus 160 --------------------------------------~~~~~~~~l~IDp~~I~w~Rv~DmNDR~LR~I~vglg~~~~G 201 (578)
T PRK13506 160 --------------------------------------EAQSGLPALDIDPEQILWKRVVDHNDRALRMITVGLGENGNG 201 (578)
T ss_pred --------------------------------------hhhccccccCcCcCeeEEeecccccchhhhceeeCcCCCCCC
Confidence 289999999999999999999999999999999999999999
Q ss_pred cceecceeEeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEE
Q 010562 256 MVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLV 335 (507)
Q Consensus 256 ~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~V 335 (507)
+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||+|||||||
T Consensus 202 ~~Re~gFdITvASEiMAIlcLa~dl~Dlk~Rl~~ivv~~~~~g~pVta~DL~~~GAm~~LLkDAikPNLvQTlEgtPa~v 281 (578)
T PRK13506 202 PEREDGFDITAASELMAILALSRDLKDMRQRIGRLVLAYNLQGQPITAEDLGVAGAMTVIMKDAIEPTLMQTLEGVPCLI 281 (578)
T ss_pred CcccCCceeeHHHHHHHHHHHcCCHHHHHHHhhcEEEEEcCCCCceeHHHccchHhHHHHHHHhccchhheecCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhcccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCcc
Q 010562 336 HAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVV 415 (507)
Q Consensus 336 HgGPFANIAHG~nSviAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~ 415 (507)
|||||||||||||||||||+||||+ ||||||||||||||||||||||||.+||+||||||||||||||||||++...
T Consensus 282 HgGPFANIAhG~nSviAt~~aLkla---DyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~ 358 (578)
T PRK13506 282 HAGPFANIAHGNSSIIADRIALKLA---DYVVTEGGFGSDMGFEKFCNIKARQSGKAPDCAVLVATLRALKANSGLYDLR 358 (578)
T ss_pred ecCCcccccccchHHHHHHHHHhhc---CeEEeeccccCCCCCceeeeeeeccCCCCCceEEEEEEeehHHhcCCCCCcc
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHH-cCCCeEEEcccccccCc
Q 010562 416 AGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMA-AGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 416 ~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~-~g~~~~~~~~~wa~GG~ 494 (507)
.|+|||++|.+||+++|++||+||.|||||+++||+|||||||+|++||++||++|+++|++ .|+. +++|+||++||+
T Consensus 359 ~g~pl~~~l~~en~~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~~~~~~~~~~~~~-~~~~~~wa~GGe 437 (578)
T PRK13506 359 PGQALPDSINAPDQARLEAGFANLKWHINNVAQYGLPVVVAINRFPTDTDEELEWLKEAVLLTGAFG-CEISEAFAQGGE 437 (578)
T ss_pred cCcccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCc-EEEechhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999 5655 999999999999
Q ss_pred CcccC
Q 010562 495 GAVSD 499 (507)
Q Consensus 495 Ga~~~ 499 (507)
|++|+
T Consensus 438 Ga~eL 442 (578)
T PRK13506 438 GATAL 442 (578)
T ss_pred hHHHH
Confidence 99875
No 8
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=1.6e-199 Score=1556.31 Aligned_cols=420 Identities=54% Similarity=0.882 Sum_probs=414.4
Q ss_pred CCCChHHHHccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHH
Q 010562 15 PVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (507)
Q Consensus 15 pm~sDieIa~~~~~~~I~~iA~~lGi~~~~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~ 94 (507)
+|||||||||+++++||++||+++||++|+||+||+|||||+++.+++++++|++|+|+||+++|||+||||||||+||+
T Consensus 1 ~~~sd~eia~~~~~~~i~~ia~~~gl~~~~~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA 80 (557)
T PRK13505 1 TMKSDIEIAQEATLKPITEIAAKLGIPEDDLEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLG 80 (557)
T ss_pred CCCChHHHHhhCCCcCHHHHHHHcCCCHHHHHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhH
Q 010562 95 QALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKA 174 (507)
Q Consensus 95 qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLlaA~iDn~i~h~n~~~~~~ 174 (507)
|+| +++|++++++||||||||+||+||||||||||||+|||||||||||||||||||||||||+|||||||+|
T Consensus 81 ~~l-a~~GkkvlliLR~Psl~~~fg~kggaaGGG~~qvlpme~inLhftGD~hAit~A~NLlaA~idn~i~~gn------ 153 (557)
T PRK13505 81 DAL-NKIGKKTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDFHAITSANNLLAALIDNHIHQGN------ 153 (557)
T ss_pred HHH-HHcCCeEEEEEecCCcccccCCCCCcCCCCceeeecHhHccccccChHHHHHHHHHHHHHHHHHHHhccC------
Confidence 999 5999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccceeeeccCCCCC
Q 010562 175 LFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 254 (507)
Q Consensus 175 l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~ 254 (507)
+|+|||++|+||||||||||+||+|+||+|++.|
T Consensus 154 ----------------------------------------------~l~id~~~i~w~Rv~D~NDR~LR~i~iglg~~~~ 187 (557)
T PRK13505 154 ----------------------------------------------ELGIDPRRITWKRVLDMNDRALRNIVVGLGGPAN 187 (557)
T ss_pred ----------------------------------------------ccCCCcceeEEEecccccchhhhceEeccCCCCC
Confidence 7999999999999999999999999999999999
Q ss_pred CcceecceeEeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeE
Q 010562 255 GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVL 334 (507)
Q Consensus 255 G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~ 334 (507)
|+|||||||||||||||||||||+|++|||+|||||||||++||+||||+||+++||||+|||||||||||||+||||||
T Consensus 188 G~~re~gFdIT~ASEiMAilcLa~~l~Dl~~Rl~~ivv~~~~~~~pvt~~dl~~~GAm~~lLkdAi~PnLvQTle~tPa~ 267 (557)
T PRK13505 188 GVPREDGFDITVASEIMAILCLATDLKDLKERLGRIVVGYTYDGKPVTVKDLKVEGAMALLLKDAIKPNLVQTLEGTPAF 267 (557)
T ss_pred CCcccCCceeeHHHHHHHHHHHhCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHHHHHHHHhhcccceeeecCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccchhcccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCc
Q 010562 335 VHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQV 414 (507)
Q Consensus 335 VHgGPFANIAHG~nSviAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~ 414 (507)
||||||||||||||||||||+||||+ ||||||||||||||||||||||||.+||+|||+||||||||||||||+++
T Consensus 268 vHgGPFANIAhG~nSviAt~~al~la---dyvvTEaGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvraLK~hgg~~~- 343 (557)
T PRK13505 268 VHGGPFANIAHGCNSVLATKTALKLA---DYVVTEAGFGADLGAEKFLDIKCRKAGLKPDAVVIVATVRALKMHGGVAK- 343 (557)
T ss_pred EecCCcchhhcccHHHHHHHHHHhhC---CEEEecccccCCCCCceeeeeecccCCCCCCEEEEEeehHHHHHcCCCCh-
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999986
Q ss_pred cCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCc
Q 010562 415 VAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 415 ~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~ 494 (507)
++|.+||+|++++||.||+|||||+|+||+|||||||+|++||++|++.|+++|++.|+. +++|+||++||+
T Consensus 344 -------~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~-va~~~~~~~Gg~ 415 (557)
T PRK13505 344 -------DDLKEENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVE-VALSEVWAKGGE 415 (557)
T ss_pred -------hhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEecccccCCc
Confidence 688999999999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred CcccC
Q 010562 495 GAVSD 499 (507)
Q Consensus 495 Ga~~~ 499 (507)
|++++
T Consensus 416 Gai~L 420 (557)
T PRK13505 416 GGVEL 420 (557)
T ss_pred chHHH
Confidence 99864
No 9
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=100.00 E-value=2.1e-198 Score=1535.92 Aligned_cols=403 Identities=66% Similarity=1.024 Sum_probs=396.1
Q ss_pred HHHHHHcCCCCcchhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 32 SEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 32 ~~iA~~lGi~~~~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
++||+++||++|+|||||+|||||+++++++++++|+||||+||+++|||+||||||||+||+|+| +++|+++++||||
T Consensus 1 ~~ia~~lgl~~~~~~~yG~~kaKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~~l-a~~Gkk~l~~LR~ 79 (524)
T cd00477 1 EEIAKELGLLEDELEPYGKYKAKVDLDVLKRLEKRPDGKLILVTAITPTPAGEGKTTTTIGLAQAL-NAHGKKAIACLRE 79 (524)
T ss_pred ChhHHHcCCCHHHHHhccCcceeecHHHHhhhccCCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH-HHhCCcEEEEEec
Confidence 379999999999999999999999999999999889999999999999999999999999999999 5999999999999
Q ss_pred CCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhhccCCCCCcCCcchh
Q 010562 112 PSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFS 191 (507)
Q Consensus 112 PSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLlaA~iDn~i~h~n~~~~~~l~~rl~p~~~~g~r~f~ 191 (507)
|||||+||+||||||||||||+|||||||||||||||||||||||||+|||||||+|
T Consensus 80 PSlg~~fg~kggaaGGG~sqvlpme~iNLhfTGD~hAItaA~NLlaA~iDn~i~~gn----------------------- 136 (524)
T cd00477 80 PSLGPTFGIKGGAAGGGYSQVIPMEEINLHFTGDIHAITAANNLLAAAIDNHIHHGN----------------------- 136 (524)
T ss_pred CCcCcccCCCCCCCCCChhhcccHhhhcccccchHHHHHHHHHHHHHHHHHHHhccc-----------------------
Confidence 999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccceeeeccCCCCCCcceecceeEeehhHHH
Q 010562 192 NIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIM 271 (507)
Q Consensus 192 ~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G~~re~gFdITvASEiM 271 (507)
+|+|||++|+||||||||||+||+|+||+|++.||+|||||||||||||||
T Consensus 137 -----------------------------~l~iDp~~I~w~Rv~D~NDR~LR~iviglGg~~~G~~re~gFdITvASEiM 187 (524)
T cd00477 137 -----------------------------RLDIDPRRITWKRVLDVNDRALRKIVIGLGGKENGVPRETGFDITVASEIM 187 (524)
T ss_pred -----------------------------ccCCCcceeEEEecccccchhhhceEeccCCCCCCccccCCceeeHHHHHH
Confidence 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEEcccccchhcccCchHH
Q 010562 272 AVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIV 351 (507)
Q Consensus 272 AIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHG~nSvi 351 (507)
||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||+|||||||||||||||||||||||
T Consensus 188 AIlcLa~~l~DLk~Rl~~ivv~~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhGcnSvi 267 (524)
T cd00477 188 AILCLATDLEDLKERLGRIVVAYSKDGEPVTAEDLGVAGAMAVLLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSII 267 (524)
T ss_pred HHHHHcCCHHHHHHHHhCEEEEEcCCCCcEeHHHcCchHhHHHHHHhhhCccceeecCCCceEEecCCcccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCccccc-ccCHH
Q 010562 352 ADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYL-NENVA 430 (507)
Q Consensus 352 Atk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~-~enl~ 430 (507)
|||+||||+ ||||||||||||||||||||||||.+||+||||||||||||||||||+++. ++. +||++
T Consensus 268 Atk~al~la---DyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~--------~l~~~en~~ 336 (524)
T cd00477 268 ADKIALKLA---DYVVTEAGFGADLGAEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVPKV--------TLGLEENLE 336 (524)
T ss_pred HHHHHHhhc---CeEEeeccccCCCCCceeeeeeeccCCCCCCEEEEEEehHHHHHhCCCCcc--------cCCCccCHH
Confidence 999999999 999999999999999999999999999999999999999999999999875 444 89999
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcCcccC
Q 010562 431 LVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSD 499 (507)
Q Consensus 431 al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~ 499 (507)
+|++||+||+|||||+++||+|||||||+|++||++||++|+++|+++|++ +++|+||++||+|++|+
T Consensus 337 al~~G~~NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~-~~~~~~~~~GG~Ga~eL 404 (524)
T cd00477 337 ALEKGFANLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKLAEEAGAF-VAVSEHWAEGGKGAVEL 404 (524)
T ss_pred HHHhHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCC-EEEehhhhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999999997 99999999999999875
No 10
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=97.08 E-value=0.00045 Score=66.77 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=42.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE---EecCCCCCCccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~---~lRePSlGP~FGiK 121 (507)
+..|.|.||+-.| ||||||++..|+.+| ++.|+++.+ .+|.|++.-.||.+
T Consensus 101 ~~~~vi~vts~~~---g~Gktt~a~nLA~~l-a~~g~~VllID~D~~~~~~~~~~~~~ 154 (274)
T TIGR03029 101 EGRKALAVVSAKS---GEGCSYIAANLAIVF-SQLGEKTLLIDANLRDPVQHRNFKLS 154 (274)
T ss_pred CCCeEEEEECCCC---CCCHHHHHHHHHHHH-HhcCCeEEEEeCCCCCccHHHhcCCC
Confidence 5678999987654 999999999999999 589999874 47899987777653
No 11
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.53 E-value=0.026 Score=43.89 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=21.4
Q ss_pred CCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010562 83 GEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 83 GEGKTTttIGL~qaL~~~lGk~a~~~lR 110 (507)
|+||||++..|++.| ++.|.+.. ++.
T Consensus 9 G~Gktt~~~~l~~~l-~~~g~~v~-~~~ 34 (99)
T cd01983 9 GVGKTTLAANLAAAL-AKRGKRVL-LID 34 (99)
T ss_pred CCCHHHHHHHHHHHH-HHCCCeEE-EEC
Confidence 999999999999999 47777754 444
No 12
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=96.42 E-value=0.0036 Score=57.93 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=41.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiKG 122 (507)
++-|.|.||+.. -|+||||++..|+.+| ++.|+++.+. ++.|++.-.|+...
T Consensus 15 ~~~kvI~v~s~k---gG~GKTt~a~~LA~~l-a~~G~rVllID~D~~~~~l~~~~~~~~ 69 (204)
T TIGR01007 15 AEIKVLLITSVK---PGEGKSTTSANIAVAF-AQAGYKTLLIDGDMRNSVMSGTFKSQN 69 (204)
T ss_pred CCCcEEEEecCC---CCCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCChhHHHHhCCCC
Confidence 447899888754 5999999999999999 5889997743 68888776666543
No 13
>CHL00175 minD septum-site determining protein; Validated
Probab=96.40 E-value=0.0041 Score=60.43 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=42.0
Q ss_pred cCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010562 64 EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 64 ~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiKG 122 (507)
+.++.+|.|.|++- .=|.||||+|..|+.+| ++.|+++.+. ++.+++.-.||+..
T Consensus 10 ~~~~~~~vi~v~s~---KGGvGKTt~a~nLA~~L-a~~g~~vlliD~D~~~~~l~~~lg~~~ 67 (281)
T CHL00175 10 KSATMSRIIVITSG---KGGVGKTTTTANLGMSI-ARLGYRVALIDADIGLRNLDLLLGLEN 67 (281)
T ss_pred hcCCCceEEEEEcC---CCCCcHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCChhhhcCCCC
Confidence 33456888888764 56999999999999999 5889997765 44466667777753
No 14
>PRK11519 tyrosine kinase; Provisional
Probab=96.29 E-value=0.0043 Score=69.13 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=44.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiKG 122 (507)
...|.|+||+..| ||||||++..|+.+| +..|+++.+. +|.|++.-.||...
T Consensus 524 ~~~kvi~vts~~~---geGKTt~a~nLA~~l-a~~g~rvLlID~Dlr~~~~~~~~~~~~ 578 (719)
T PRK11519 524 AQNNVLMMTGVSP---SIGKTFVCANLAAVI-SQTNKRVLLIDCDMRKGYTHELLGTNN 578 (719)
T ss_pred CCceEEEEECCCC---CCCHHHHHHHHHHHH-HhCCCcEEEEeCCCCCCcHHHHhCCCC
Confidence 4578999998777 999999999999999 5899998765 89999888887653
No 15
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.99 E-value=0.0055 Score=67.95 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=42.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiK 121 (507)
+..|.|.||+-.| ||||||++..|+.+| ++.|+++.+. +|.||+.-.||+.
T Consensus 544 ~~~kvi~vts~~~---G~GKTt~a~nLA~~l-A~~g~rvLlID~D~~~~~l~~~~~~~ 597 (754)
T TIGR01005 544 AEPEVVETQRPRP---VLGKSDIEANAAALI-ASGGKRALLIDADGRKAALSQILVAR 597 (754)
T ss_pred CCceEEEeecCCC---CCChhHHHHHHHHHH-HhCCCeEEEEeCCCCchhHHHHhCCc
Confidence 4578888887654 899999999999999 5899997765 7999998888864
No 16
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=95.96 E-value=0.0098 Score=55.83 Aligned_cols=52 Identities=35% Similarity=0.486 Sum_probs=39.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE---EecCCCCCCccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~---~lRePSlGP~FGiK 121 (507)
..+|.|.||+ ..-|+||||++..|+.+|....|+++.+ ..+.|++...||++
T Consensus 33 ~~~~vi~v~s---~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~ 87 (207)
T TIGR03018 33 KNNNLIMVTS---SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLE 87 (207)
T ss_pred CCCeEEEEEC---CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCC
Confidence 4578887775 4569999999999999994235998764 36777777777654
No 17
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=95.89 E-value=0.0096 Score=62.15 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=58.6
Q ss_pred CCCHHHHHHHcCCCCcchhcc--------------cCc--eeeecchhhhhc-------cCCCCCcEEEEeecCCCCCCC
Q 010562 28 PLHISEIAQELNLKPNHYDLY--------------GKY--KAKVLLSVLDEL-------EGSADGYYVVVGGITPTPLGE 84 (507)
Q Consensus 28 ~~~I~~iA~~lGi~~~~le~Y--------------G~~--kAKi~l~~l~~~-------~~~~~GKlIlVTaitPTP~GE 84 (507)
.-+|.|+|+.+|++.+.+-.| |+. +.-.+++-+.++ ..++.|.-.-|-+|.--.=|.
T Consensus 39 ~~~i~e~A~~~gvs~~tiR~ye~~gll~~~~~~~~gr~~~~~~ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGV 118 (388)
T PRK13705 39 RWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMEMRGRVEQRVGYTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGV 118 (388)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCcchhhcCcCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCc
Confidence 347999999999998888777 331 111333333221 122333212233455567899
Q ss_pred CcchhHhhHHHHHhhhcCCcEEEE-e--cCCCCCCccc
Q 010562 85 GKSTTTVGLCQALGAFLDKKVVTC-L--RQPSQGPTFG 119 (507)
Q Consensus 85 GKTTttIGL~qaL~~~lGk~a~~~-l--RePSlGP~FG 119 (507)
||||||+.|+.+| ++.|+++.+. + .|-|+--.||
T Consensus 119 GKTT~a~nLA~~L-A~~G~rVLlID~~DpQ~nlt~~~g 155 (388)
T PRK13705 119 YKTSVSVHLAQDL-ALKGLRVLLVEGNDPQGTASMYHG 155 (388)
T ss_pred hHHHHHHHHHHHH-HhcCCCeEEEcCCCCCCchhhhcC
Confidence 9999999999999 5899998765 2 5556655565
No 18
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.80 E-value=0.0087 Score=66.84 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=43.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiK 121 (507)
..+|.|+||+-.| ||||||++..|+.+| +..|+++.+. +|.|++--.||+.
T Consensus 529 ~~~kvI~vtS~~~---g~GKTtva~nLA~~l-a~~G~rVLlID~D~r~~~l~~~~~~~ 582 (726)
T PRK09841 529 TENNILMITGATP---DSGKTFVSSTLAAVI-AQSDQKVLFIDADLRRGYSHNLFTVS 582 (726)
T ss_pred CCCeEEEEecCCC---CCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCcHHHHcCCC
Confidence 4689999998765 999999999999999 6999998854 8999887778765
No 19
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=95.62 E-value=0.019 Score=60.08 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=57.1
Q ss_pred CCHHHHHHHcCCCCcchhcc--------------cCceee--ecchhhhh-------ccCCCCCc-EEEEeecCCCCCCC
Q 010562 29 LHISEIAQELNLKPNHYDLY--------------GKYKAK--VLLSVLDE-------LEGSADGY-YVVVGGITPTPLGE 84 (507)
Q Consensus 29 ~~I~~iA~~lGi~~~~le~Y--------------G~~kAK--i~l~~l~~-------~~~~~~GK-lIlVTaitPTP~GE 84 (507)
-.+.|+|+.+|+++..|..| |+-..+ .+++-+.. ...++.++ ..++ ++.-..=|.
T Consensus 40 f~~~eaA~l~gvs~~~lr~~~~~g~~p~~~~~~~gr~~~R~~ytl~eI~~lr~~~~~~~~r~~~~~~~vI-av~n~KGGV 118 (387)
T PHA02519 40 WGITEVADLIGVTPQAIRDAEKSGRLPPPDFETRGRVERRAGYTIDQISHMRDHFGNPNQRPDDKNPVVL-AVMSHKGGV 118 (387)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHcCCCCCCccCCCCcccccceEcHHHHHHHHHHhhccccCcCCCCceEE-EEecCCCCC
Confidence 37899999999998777655 321112 33332221 11223343 2222 333557899
Q ss_pred CcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccc
Q 010562 85 GKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGI 120 (507)
Q Consensus 85 GKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGi 120 (507)
||||||+-|+++| +..|+++.+. -.|.|+--.||.
T Consensus 119 GKTTta~nLA~~L-A~~G~rVLlIDl~DpQ~nlt~~~g~ 156 (387)
T PHA02519 119 YKTSSAVHTAQWL-ALQGHRVLLIEGNDPQGTASMYHGY 156 (387)
T ss_pred cHHHHHHHHHHHH-HhCCCcEEEEeCCCCCCCcccccCc
Confidence 9999999999999 5899997764 356677667764
No 20
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=95.46 E-value=0.021 Score=58.92 Aligned_cols=91 Identities=26% Similarity=0.260 Sum_probs=53.9
Q ss_pred CCHHHHHHHcCCCCcchhcc---cC-ceeee--------cc---hhhhh---c---------cCCCCCcEEEEeecCCCC
Q 010562 29 LHISEIAQELNLKPNHYDLY---GK-YKAKV--------LL---SVLDE---L---------EGSADGYYVVVGGITPTP 81 (507)
Q Consensus 29 ~~I~~iA~~lGi~~~~le~Y---G~-~kAKi--------~l---~~l~~---~---------~~~~~GKlIlVTaitPTP 81 (507)
-+|.|+|+.+|++..-|..| |. +..+- +. ..|.. . ..++.|+-.-|-+++-..
T Consensus 34 ~~i~eva~~~gv~~~tlr~~e~~~~~~~~~r~~~g~r~yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~K 113 (387)
T TIGR03453 34 FTSGEVAKLLGVSDSYLRQLSLEGKGPEPETLSNGRRSYTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFK 113 (387)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCceeeCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccC
Confidence 48999999999998876654 10 00100 11 11111 0 111223222233444557
Q ss_pred CCCCcchhHhhHHHHHhhhcCCcEEEEe--cCCCCCCcccc
Q 010562 82 LGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFGI 120 (507)
Q Consensus 82 ~GEGKTTttIGL~qaL~~~lGk~a~~~l--RePSlGP~FGi 120 (507)
-|+||||||+-|+.+| +..|+++.+.= -|+|+.-.||.
T Consensus 114 GGvGKTT~a~nLA~~L-a~~G~rVLlID~DpQ~~ls~~~g~ 153 (387)
T TIGR03453 114 GGSGKTTTAAHLAQYL-ALRGYRVLAIDLDPQASLSALFGY 153 (387)
T ss_pred CCcCHHHHHHHHHHHH-HhcCCCEEEEecCCCCCHHHHcCC
Confidence 7999999999999999 58899865441 35666655654
No 21
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=95.45 E-value=0.017 Score=54.28 Aligned_cols=48 Identities=35% Similarity=0.345 Sum_probs=34.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC---CCCCCcccc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ---PSQGPTFGI 120 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe---PSlGP~FGi 120 (507)
||.|.|++ +.=|.||||++..|+.+| ++.|+++.+.=-. |++.-.||.
T Consensus 1 ~~ii~v~s---~kGGvGKTt~a~~lA~~l-a~~g~~vlliD~D~~~~~~~~~lg~ 51 (261)
T TIGR01968 1 ARVIVITS---GKGGVGKTTTTANLGTAL-ARLGKKVVLIDADIGLRNLDLLLGL 51 (261)
T ss_pred CeEEEEec---CCCCccHHHHHHHHHHHH-HHcCCeEEEEECCCCCCCeeEEeCC
Confidence 56776665 566999999999999999 5889998766333 444444544
No 22
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=95.45 E-value=0.02 Score=59.22 Aligned_cols=52 Identities=25% Similarity=0.235 Sum_probs=44.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccccC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiKGG 123 (507)
+..|.|.||+ .-|+||||++.-|+.+| ++.|+++.+. +|.||+.-.||++..
T Consensus 29 ~~~~ii~v~g----kgG~GKSt~a~nLa~~l-a~~g~rVllid~D~~~~~~~~~~g~~~~ 83 (329)
T cd02033 29 KKTQIIAIYG----KGGIGKSFTLANLSYMM-AQQGKRVLLIGCDPKSDTTSLLFGGKAC 83 (329)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCcEEEEEeeecccccchhccccCC
Confidence 4578888884 68999999999999999 5889998765 899999999997654
No 23
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=95.19 E-value=0.014 Score=52.26 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=29.3
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010562 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSl 114 (507)
|++|-.|+||||++.||+.+| ++-|+++. ++.|.+
T Consensus 2 I~~t~~~~GKT~va~~L~~~l-~~~g~~V~--~~kP~~ 36 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKL-KKAGYSVG--YYKPVQ 36 (166)
T ss_pred eecCCCCccHHHHHHHHHHHH-HHCCCcEE--EEEeee
Confidence 688999999999999999999 58898864 466654
No 24
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.04 E-value=0.018 Score=57.29 Aligned_cols=52 Identities=37% Similarity=0.381 Sum_probs=43.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE---EecCCCCCCccccccC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIKGG 123 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~---~lRePSlGP~FGiKGG 123 (507)
..+.|+||+ .+-|+||||||.-|+.+| ++.|+++.+ -+|.||+--.||+...
T Consensus 56 ~~~~I~V~S---~kgGvGKStva~nLA~al-A~~G~rVlliDaD~~gps~~~~l~~~~~ 110 (265)
T COG0489 56 VKNVIAVTS---GKGGVGKSTVAVNLAAAL-AQLGKRVLLLDADLRGPSIPRMLGLENL 110 (265)
T ss_pred cceEEEEEe---CCCCCcHHHHHHHHHHHH-HhcCCcEEEEeCcCCCCchHHHhCCCCC
Confidence 466777765 567999999999999999 699999875 4899999999998553
No 25
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=94.93 E-value=0.039 Score=57.98 Aligned_cols=46 Identities=30% Similarity=0.312 Sum_probs=31.8
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEe--cCCCCCCccc
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFG 119 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~l--RePSlGP~FG 119 (507)
|.|.|+ =..=|.||||||+-|+++| ++.|+++.+.= -|.|+--.||
T Consensus 122 ~vIav~---n~KGGvGKTTta~nLA~~L-A~~G~rVLlIDlDpQ~~lt~~~g 169 (405)
T PRK13869 122 QVIAVT---NFKGGSGKTTTSAHLAQYL-ALQGYRVLAVDLDPQASLSALLG 169 (405)
T ss_pred eEEEEE---cCCCCCCHHHHHHHHHHHH-HhcCCceEEEcCCCCCCHHHHcC
Confidence 444444 4577999999999999999 68999965442 3444333354
No 26
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.46 E-value=0.043 Score=57.46 Aligned_cols=45 Identities=33% Similarity=0.530 Sum_probs=35.4
Q ss_pred hccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 62 ELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 62 ~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
.+.+.++| |||||| |-|+|||||--.+.+-+| +--...+++|-.|
T Consensus 119 ~~~~~~~G-LILVTG----pTGSGKSTTlAamId~iN-~~~~~HIlTIEDP 163 (353)
T COG2805 119 ELAESPRG-LILVTG----PTGSGKSTTLAAMIDYIN-KHKAKHILTIEDP 163 (353)
T ss_pred HHHhCCCc-eEEEeC----CCCCcHHHHHHHHHHHHh-ccCCcceEEecCc
Confidence 34445555 999999 449999999999999996 6666778888765
No 27
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=94.34 E-value=0.033 Score=54.47 Aligned_cols=48 Identities=29% Similarity=0.318 Sum_probs=39.2
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec--CCCCCCcccccc
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIKG 122 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lR--ePSlGP~FGiKG 122 (507)
|+|++++ .-|+||||++..|+.++ ++.|+++.+.=- +||++-+||++-
T Consensus 1 ~~~~~~g----kgG~GKtt~a~~la~~~-a~~g~~vLlvd~D~~~sl~~~~~~~~ 50 (254)
T cd00550 1 RYIFFGG----KGGVGKTTISAATAVRL-AEQGKKVLLVSTDPAHSLSDSFNQEF 50 (254)
T ss_pred CEEEEEC----CCCchHHHHHHHHHHHH-HHCCCCceEEeCCCcccHHHHhCCcc
Confidence 4677776 47999999999999999 589999876522 379999999984
No 28
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.18 E-value=0.049 Score=49.15 Aligned_cols=35 Identities=37% Similarity=0.240 Sum_probs=28.3
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
++-..-|+||||+++.|+.+| +..|+++.+.=..|
T Consensus 4 v~s~kgG~GKTt~a~~LA~~l-a~~g~~vllvD~D~ 38 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALAL-AKLGYKVGLLDADI 38 (169)
T ss_pred EecCCCcCChhHHHHHHHHHH-HHcCCcEEEEeCCC
Confidence 445567999999999999999 58899988763443
No 29
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=93.80 E-value=0.056 Score=47.84 Aligned_cols=41 Identities=39% Similarity=0.332 Sum_probs=31.0
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcc
Q 010562 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTF 118 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~F 118 (507)
++-+.-|+||||+++.|+.+| ++.|+++.+. .++|++.-.|
T Consensus 4 v~~~kgG~GKtt~a~~la~~l-~~~g~~vllvD~D~~~~~~~~~~ 47 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTAL-AQLGYKVVLIDADLGLRNLDLIL 47 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCCchhhc
Confidence 344677999999999999999 5889998776 4445544443
No 30
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.77 E-value=0.067 Score=50.24 Aligned_cols=39 Identities=38% Similarity=0.416 Sum_probs=30.0
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSl 114 (507)
.|-|++ .-|.||||+|.-|+.+| ++.|+++.+.=-.|-.
T Consensus 2 ~iav~g----KGGvGKTt~~~nLA~~l-a~~G~rvLliD~D~q~ 40 (212)
T cd02117 2 QIAIYG----KGGIGKSTTSQNLSAAL-AEMGKKVLQVGCDPKA 40 (212)
T ss_pred EEEEEC----CCcCcHHHHHHHHHHHH-HHCCCcEEEEeCCCCC
Confidence 355653 88999999999999999 5899997655344443
No 31
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=93.62 E-value=0.074 Score=51.37 Aligned_cols=39 Identities=38% Similarity=0.346 Sum_probs=30.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
+|.|-|. + .=|.|||||++-|+.+| ++.|+++.+.=-.|
T Consensus 2 ~~iIav~--~--KGGVGKTT~~~nLA~~l-a~~G~kVLliD~Dp 40 (270)
T PRK13185 2 ALVLAVY--G--KGGIGKSTTSSNLSAAF-AKLGKKVLQIGCDP 40 (270)
T ss_pred ceEEEEE--C--CCCCCHHHHHHHHHHHH-HHCCCeEEEEeccC
Confidence 4566663 4 89999999999999999 58999977653455
No 32
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.38 E-value=0.069 Score=48.36 Aligned_cols=40 Identities=38% Similarity=0.699 Sum_probs=28.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGi 120 (507)
+.|.+|+..| ++|.||||.+.|++++|+ +.++--=|||-+
T Consensus 13 ~~g~vi~L~G----dLGaGKTtf~r~l~~~lg----------~~~~V~SPTF~l 52 (123)
T PF02367_consen 13 KPGDVILLSG----DLGAGKTTFVRGLARALG----------IDEEVTSPTFSL 52 (123)
T ss_dssp SS-EEEEEEE----STTSSHHHHHHHHHHHTT------------S----TTTTS
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHHcC----------CCCCcCCCCeEE
Confidence 5689999998 799999999999999995 233455678875
No 33
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=93.35 E-value=0.092 Score=53.23 Aligned_cols=36 Identities=44% Similarity=0.436 Sum_probs=31.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
+|.|+||+ -.-|-||||||--|+-|| +++|||+++.
T Consensus 2 ~~iIVvTS---GKGGVGKTTttAnig~aL-A~~GkKv~li 37 (272)
T COG2894 2 ARIIVVTS---GKGGVGKTTTTANIGTAL-AQLGKKVVLI 37 (272)
T ss_pred ceEEEEec---CCCCcCccchhHHHHHHH-HHcCCeEEEE
Confidence 67888875 578999999999999999 6999998753
No 34
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.08 E-value=0.11 Score=47.48 Aligned_cols=45 Identities=33% Similarity=0.513 Sum_probs=35.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FG 119 (507)
.|++|.|.|+ -|.||||.+--|.+.|+ ..|. .+...|+|+ +-.+|
T Consensus 2 ~~~~I~ieG~----~gsGKsT~~~~L~~~l~-~~~~-~~~~~~~p~-~~~~~ 46 (205)
T PRK00698 2 RGMFITIEGI----DGAGKSTQIELLKELLE-QQGR-DVVFTREPG-GTPLG 46 (205)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHHHH-HcCC-ceeEeeCCC-CChHH
Confidence 3889999996 59999999999999994 6674 466789998 43343
No 35
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=92.70 E-value=0.12 Score=48.48 Aligned_cols=44 Identities=34% Similarity=0.345 Sum_probs=32.9
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEe---cCCCCCCccccc
Q 010562 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL---RQPSQGPTFGIK 121 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lGk~a~~~l---RePSlGP~FGiK 121 (507)
+.-..-|.||||+++.|+.+| ++.|+++.+.= .++++.-.||++
T Consensus 5 v~~~KGGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~~~~~~g~~ 51 (251)
T TIGR01969 5 IASGKGGTGKTTITANLGVAL-AKLGKKVLALDADITMANLELILGME 51 (251)
T ss_pred EEcCCCCCcHHHHHHHHHHHH-HHCCCeEEEEeCCCCCccceeEeCCC
Confidence 345677999999999999999 58899876652 345665556654
No 36
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.66 E-value=0.077 Score=51.85 Aligned_cols=31 Identities=42% Similarity=0.386 Sum_probs=26.1
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
.=|.||||||+.|+.+| ++.|+++.+.==.|
T Consensus 9 KGGVGKTT~a~nLA~~L-a~~G~rVLliD~Dp 39 (279)
T PRK13230 9 KGGIGKSTTVCNIAAAL-AESGKKVLVVGCDP 39 (279)
T ss_pred CCCCcHHHHHHHHHHHH-HhCCCEEEEEeeCC
Confidence 77999999999999999 59999976653344
No 37
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=92.62 E-value=0.08 Score=51.18 Aligned_cols=32 Identities=44% Similarity=0.369 Sum_probs=27.3
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
.=|.||||+|+-|+.+| ++.|+++.+.==.|.
T Consensus 8 KGGvGKTT~a~nLA~~l-a~~G~rvlliD~Dpq 39 (267)
T cd02032 8 KGGIGKSTTSSNLSVAL-AKRGKKVLQIGCDPK 39 (267)
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCcEEEEecCCC
Confidence 78999999999999999 589999876645553
No 38
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.48 E-value=0.13 Score=49.04 Aligned_cols=27 Identities=52% Similarity=0.492 Sum_probs=24.5
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.=|.||||+|+.|+.+| ++.|+++.+.
T Consensus 9 KGGvGKTT~~~nLA~~L-a~~G~kVlli 35 (270)
T cd02040 9 KGGIGKSTTTQNLSAAL-AEMGKKVMIV 35 (270)
T ss_pred CCcCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 88999999999999999 5899987765
No 39
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=92.43 E-value=0.086 Score=50.88 Aligned_cols=31 Identities=42% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
.=|.||||||+-|+.+| ++.|+++.+.==.|
T Consensus 8 KGGVGKTT~~~nLA~~L-a~~g~rVLliD~D~ 38 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAF-AKLGKRVLQIGCDP 38 (268)
T ss_pred CCcCcHHHHHHHHHHHH-HhCCCeEEEEecCc
Confidence 77999999999999999 58899976542344
No 40
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.28 E-value=0.082 Score=53.69 Aligned_cols=56 Identities=32% Similarity=0.389 Sum_probs=41.8
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC--CCCCccccccCCCCCCceeee
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP--SQGPTFGIKGGAAGGGYSQVI 133 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP--SlGP~FGiKGGAaGGGysQVi 133 (507)
|+|+++| +=|.||||++..++.++ ++.|+++.++==.| |+|.+||.+-| +.-.+|-
T Consensus 2 r~~~~~G----KGGVGKTT~aaA~A~~~-A~~G~rtLlvS~Dpa~~L~d~l~~~~~---~~~~~v~ 59 (305)
T PF02374_consen 2 RILFFGG----KGGVGKTTVAAALALAL-ARRGKRTLLVSTDPAHSLSDVLGQKLG---GEPTKVE 59 (305)
T ss_dssp SEEEEEE----STTSSHHHHHHHHHHHH-HHTTS-EEEEESSTTTHHHHHHTS--B---SS-EEET
T ss_pred eEEEEec----CCCCCcHHHHHHHHHHH-hhCCCCeeEeecCCCccHHHHhCCcCC---CCCeEec
Confidence 5778887 56999999999999999 58899998887666 68889999753 3444443
No 41
>PLN02924 thymidylate kinase
Probab=92.20 E-value=0.17 Score=49.11 Aligned_cols=47 Identities=26% Similarity=0.301 Sum_probs=38.8
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~F 118 (507)
++.|++|.+.|+ -|.||||.+--|.+.|. ..|.++ ..+|||+-+...
T Consensus 13 ~~~g~~IviEGi----DGsGKsTq~~~L~~~l~-~~g~~v-~~~~ep~~~~~~ 59 (220)
T PLN02924 13 ESRGALIVLEGL----DRSGKSTQCAKLVSFLK-GLGVAA-ELWRFPDRTTSV 59 (220)
T ss_pred CCCCeEEEEECC----CCCCHHHHHHHHHHHHH-hcCCCc-eeeeCCCCCChH
Confidence 356999999998 59999999999999995 678885 688999754333
No 42
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.10 E-value=0.18 Score=50.50 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=28.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
..+.|++++ |-|+|||||+.-|+..| ...|+++.+
T Consensus 71 ~~~vi~l~G----~~G~GKTTt~akLA~~l-~~~g~~V~l 105 (272)
T TIGR00064 71 KPNVILFVG----VNGVGKTTTIAKLANKL-KKQGKSVLL 105 (272)
T ss_pred CCeEEEEEC----CCCCcHHHHHHHHHHHH-HhcCCEEEE
Confidence 467888885 77999999999999999 577776543
No 43
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=91.99 E-value=0.22 Score=49.82 Aligned_cols=51 Identities=25% Similarity=0.178 Sum_probs=37.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiK 121 (507)
..||.|.|++ ..-|.||||+++.|+.+| ++.|+++.+. .+.+++.-.||++
T Consensus 91 ~~~~vIav~~---~KGGvGkTT~a~nLA~~l-a~~g~~VlLvD~D~~~~~~~~~lg~~ 144 (322)
T TIGR03815 91 ARGVVVAVIG---GRGGAGASTLAAALALAA-ARHGLRTLLVDADPWGGGLDLLLGAE 144 (322)
T ss_pred CCceEEEEEc---CCCCCcHHHHHHHHHHHH-HhcCCCEEEEecCCCCCCeeeeecCC
Confidence 4689888876 567999999999999999 5889887654 2333333345554
No 44
>PRK10037 cell division protein; Provisional
Probab=91.85 E-value=0.15 Score=49.24 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=31.5
Q ss_pred ecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE-e-cCCCCCCcccc
Q 010562 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC-L-RQPSQGPTFGI 120 (507)
Q Consensus 76 aitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~-l-RePSlGP~FGi 120 (507)
++.=..=|.||||+++.|+.+| ++.|+++.+. + .|.++.-.||.
T Consensus 5 av~n~KGGvGKTT~a~nLA~~L-a~~G~rVLlID~D~q~~~s~~~g~ 50 (250)
T PRK10037 5 GLQGVRGGVGTTSITAALAWSL-QMLGENVLVIDACPDNLLRLSFNV 50 (250)
T ss_pred EEecCCCCccHHHHHHHHHHHH-HhcCCcEEEEeCChhhhHHHHhCC
Confidence 4445678999999999999999 5899997654 2 23344444444
No 45
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=91.76 E-value=0.12 Score=50.32 Aligned_cols=27 Identities=48% Similarity=0.482 Sum_probs=23.5
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.=|.||||+|+.|+.+| ++.|+++.+.
T Consensus 8 KGGVGKTT~a~nLA~~L-a~~G~~Vlli 34 (275)
T TIGR01287 8 KGGIGKSTTTQNIAAAL-AEMGKKVMIV 34 (275)
T ss_pred CCcCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 77999999999999999 5889886553
No 46
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=91.76 E-value=0.25 Score=45.07 Aligned_cols=40 Identities=33% Similarity=0.424 Sum_probs=34.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSl 114 (507)
|++|+++|+ -|.||||.+--|++.|+ ..|.+. ..+++|+-
T Consensus 3 g~~IvieG~----~GsGKsT~~~~L~~~l~-~~g~~v-~~~~~~~~ 42 (195)
T TIGR00041 3 GMFIVIEGI----DGAGKTTQANLLKKLLQ-ENGYDV-LFTREPGG 42 (195)
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHHHH-HcCCeE-EEEeCCCC
Confidence 899999997 59999999999999995 678775 56888863
No 47
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=91.75 E-value=0.13 Score=46.05 Aligned_cols=32 Identities=34% Similarity=0.274 Sum_probs=25.5
Q ss_pred CCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 79 PTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
-+.=|.||||+|..|+++|. +.|+++.+.=-.
T Consensus 5 ~~kGG~GKTt~a~~la~~la-~~g~~VlliD~D 36 (195)
T PF01656_consen 5 SGKGGVGKTTIAANLAQALA-RKGKKVLLIDLD 36 (195)
T ss_dssp ESSTTSSHHHHHHHHHHHHH-HTTS-EEEEEES
T ss_pred cCCCCccHHHHHHHHHhccc-cccccccccccC
Confidence 45679999999999999994 789998765443
No 48
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.49 E-value=0.29 Score=43.73 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=33.7
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
++|.+.|+ -|.||||.+--|++.|. ..|.++ +.+++|+-++
T Consensus 1 ~~I~ieG~----~GsGKtT~~~~L~~~l~-~~g~~v-~~~~~~~~~~ 41 (200)
T cd01672 1 MFIVFEGI----DGAGKTTLIELLAERLE-ARGYEV-VLTREPGGTP 41 (200)
T ss_pred CEEEEECC----CCCCHHHHHHHHHHHHH-HcCCeE-EEEeCCCCCc
Confidence 47778874 69999999999999995 778885 7899998543
No 49
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=91.45 E-value=0.16 Score=49.46 Aligned_cols=38 Identities=37% Similarity=0.296 Sum_probs=29.2
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc
Q 010562 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~F 118 (507)
-.=|.||||||+.|+.+| ++.|+++.+.==.|-.-=+.
T Consensus 8 ~KGGVGKTT~~~nLA~~L-a~~G~rVLlID~Dpq~~~t~ 45 (274)
T PRK13235 8 GKGGIGKSTTTQNTVAGL-AEMGKKVMVVGCDPKADSTR 45 (274)
T ss_pred CCCCccHHHHHHHHHHHH-HHCCCcEEEEecCCcccccc
Confidence 388999999999999999 58999976653445443333
No 50
>PHA02518 ParA-like protein; Provisional
Probab=91.37 E-value=0.15 Score=46.63 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=24.3
Q ss_pred CCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 79 PTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
-..=|.||||+|+.|+.+| ++.|+++.+.
T Consensus 7 ~~KGGvGKTT~a~~la~~l-a~~g~~vlli 35 (211)
T PHA02518 7 NQKGGAGKTTVATNLASWL-HADGHKVLLV 35 (211)
T ss_pred cCCCCCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 3466899999999999999 5889887644
No 51
>PRK13973 thymidylate kinase; Provisional
Probab=91.36 E-value=0.28 Score=46.64 Aligned_cols=42 Identities=31% Similarity=0.410 Sum_probs=35.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
|++|++-|+ -|.||||.+-.|++.|. ..|.+ +...|||+..|
T Consensus 3 g~~IviEG~----dGsGKtTq~~~l~~~l~-~~g~~-~~~~~~p~~~~ 44 (213)
T PRK13973 3 GRFITFEGG----EGAGKSTQIRLLAERLR-AAGYD-VLVTREPGGSP 44 (213)
T ss_pred ceEEEEEcC----CCCCHHHHHHHHHHHHH-HCCCe-EEEEECCCCCc
Confidence 899999997 49999999999999995 66876 57789998544
No 52
>PRK11670 antiporter inner membrane protein; Provisional
Probab=91.20 E-value=0.22 Score=51.92 Aligned_cols=48 Identities=33% Similarity=0.325 Sum_probs=37.8
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccc
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiK 121 (507)
|.|.|+ -..=|+||||||+-|+.+| ++.|+++.+. ++-||+-=.||+.
T Consensus 108 ~vIaV~---S~KGGVGKTT~avNLA~aL-A~~G~rVlLID~D~qgps~~~~lg~~ 158 (369)
T PRK11670 108 NIIAVS---SGKGGVGKSSTAVNLALAL-AAEGAKVGILDADIYGPSIPTMLGAE 158 (369)
T ss_pred EEEEEe---CCCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCCCCCcchhcCCc
Confidence 555554 5667999999999999999 5899998765 7778875567764
No 53
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=91.04 E-value=0.28 Score=47.87 Aligned_cols=44 Identities=32% Similarity=0.444 Sum_probs=38.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~ 117 (507)
.|++|.+-|| -|.||||.+--|.+-| ...|. .++..|||+-+|+
T Consensus 2 ~g~fI~iEGi----DGaGKTT~~~~L~~~l-~~~g~-~v~~trEP~~~~i 45 (208)
T COG0125 2 KGMFIVIEGI----DGAGKTTQAELLKERL-EERGI-KVVLTREPGGTPI 45 (208)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHHH-HHcCC-eEEEEeCCCCChH
Confidence 5899999998 5999999999999999 57788 5788999987654
No 54
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=90.88 E-value=0.2 Score=48.87 Aligned_cols=32 Identities=38% Similarity=0.389 Sum_probs=26.8
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
-.=|.|||||++-|+-+| ++.|+++.+.==.|
T Consensus 8 gKGGVGKTT~a~nLA~~L-a~~G~rVllvD~Dp 39 (273)
T PRK13232 8 GKGGIGKSTTTQNLTAAL-STMGNKILLVGCDP 39 (273)
T ss_pred CCCCCcHHHHHHHHHHHH-HhhCCCeEEEeccc
Confidence 588999999999999999 58999987663333
No 55
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=90.87 E-value=0.16 Score=47.67 Aligned_cols=30 Identities=33% Similarity=0.285 Sum_probs=25.6
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
|+.|-.|.|||++|.||+++| .+.|+++..
T Consensus 4 I~~t~t~~GKT~vs~~L~~~l-~~~g~~v~~ 33 (222)
T PRK00090 4 VTGTDTDVGKTVVTAALAQAL-REAGYSVAG 33 (222)
T ss_pred EEeCCCCcCHHHHHHHHHHHH-HHcCCceEE
Confidence 456788999999999999999 588998643
No 56
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.85 E-value=0.25 Score=45.58 Aligned_cols=45 Identities=33% Similarity=0.460 Sum_probs=35.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
+.|++|+++| |-|.||||++.-|.+-+. .+.......-|+|..|-
T Consensus 3 ~~g~~i~i~G----~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge 47 (205)
T PRK00300 3 RRGLLIVLSG----PSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGE 47 (205)
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCC
Confidence 5699999999 679999999988888763 55555556778988764
No 57
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=90.57 E-value=0.11 Score=52.88 Aligned_cols=35 Identities=49% Similarity=0.472 Sum_probs=27.1
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCC
Q 010562 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQG 115 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlG 115 (507)
-.=|.||||||+=|+-|| ++.|+++-+. +||||+.
T Consensus 8 gKGGvGKSTva~~lA~aL-a~~G~kVg~lD~Di~q~S~~ 45 (261)
T PF09140_consen 8 GKGGVGKSTVAVNLAVAL-ARMGKKVGLLDLDIRQPSLP 45 (261)
T ss_dssp SSTTTTHHHHHHHHHHHH-HCTT--EEEEE--TTT-HHH
T ss_pred CCCCCcHHHHHHHHHHHH-HHCCCeEEEEecCCCCCCHH
Confidence 467999999999999999 6999997654 7888775
No 58
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=90.48 E-value=0.24 Score=45.37 Aligned_cols=71 Identities=27% Similarity=0.435 Sum_probs=46.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCccccc-ccchh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL-HLTGD 145 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNL-HfTGD 145 (507)
+.|++|++.| +.|.||||.+.+++++|+ . .++=--|||-+.--= +.....+ || |
T Consensus 20 ~~~~~i~l~G----~lGaGKTtl~~~l~~~lg-~---------~~~v~SPTf~lv~~Y---------~~~~~~l~H~--D 74 (133)
T TIGR00150 20 DFGTVVLLKG----DLGAGKTTLVQGLLQGLG-I---------QGNVTSPTFTLVNEY---------NEGNLMVYHF--D 74 (133)
T ss_pred CCCCEEEEEc----CCCCCHHHHHHHHHHHcC-C---------CCcccCCCeeeeeec---------ccCCCcEEEe--c
Confidence 4688999998 689999999999999994 2 223346778775332 2111122 44 6
Q ss_pred hhHHHHHHhHHHHHHHh
Q 010562 146 IHAITAANNLLAAAIDT 162 (507)
Q Consensus 146 ~HAItaAnNLlaA~iDn 162 (507)
+..+.....+..--+|-
T Consensus 75 lYRl~~~~e~~~lg~ee 91 (133)
T TIGR00150 75 LYRLADPEELELMGLED 91 (133)
T ss_pred hhhcCChhHHHHCChHH
Confidence 77777666665555553
No 59
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=90.43 E-value=0.23 Score=49.76 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=28.6
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCC
Q 010562 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQG 115 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlG 115 (507)
-.-|.|||||++-|+.+| ++.|+++.+. .+.++..
T Consensus 11 ~KGGvGKTt~~~nLa~~l-a~~g~kVLliD~D~q~~~~~ 48 (295)
T PRK13234 11 GKGGIGKSTTSQNTLAAL-VEMGQKILIVGCDPKADSTR 48 (295)
T ss_pred CCCCccHHHHHHHHHHHH-HHCCCeEEEEeccccccccc
Confidence 688999999999999999 6999997776 4444443
No 60
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=90.40 E-value=0.23 Score=46.72 Aligned_cols=29 Identities=34% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 79 PTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
-..-|+||||+++.|+.+| ++.|+++.+.
T Consensus 8 s~KGGvGKTt~a~nla~~l-a~~g~~Vlli 36 (246)
T TIGR03371 8 GVKGGVGKTTLTANLASAL-KLLGEPVLAI 36 (246)
T ss_pred eCCCCccHHHHHHHHHHHH-HhCCCcEEEE
Confidence 3567999999999999999 5889886543
No 61
>PRK10646 ADP-binding protein; Provisional
Probab=90.26 E-value=0.26 Score=46.29 Aligned_cols=28 Identities=39% Similarity=0.566 Sum_probs=25.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|.+|+..| ++|.||||.+.||+++|+
T Consensus 26 ~~g~vi~L~G----dLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 26 DGATVIYLYG----DLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 4588999988 699999999999999995
No 62
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=89.92 E-value=0.22 Score=50.00 Aligned_cols=32 Identities=41% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
.=|.|||||++-|+.+| ++.|+++.+.==.|-
T Consensus 8 KGGVGKTTta~nLA~~L-a~~G~rVLlID~DpQ 39 (290)
T CHL00072 8 KGGIGKSTTSCNISIAL-ARRGKKVLQIGCDPK 39 (290)
T ss_pred CCCCcHHHHHHHHHHHH-HHCCCeEEEEeccCC
Confidence 67999999999999999 599999765544443
No 63
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=89.55 E-value=0.3 Score=49.23 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=28.7
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlG 115 (507)
.=|+||||||+.|+.+| +..|+++.+.==.|.++
T Consensus 8 KGGvGKTT~a~nLA~~L-a~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMM-AEMGKRVLQLGCDPKHD 41 (296)
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCeEEEEEecCCCC
Confidence 78999999999999999 58899988776666544
No 64
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=89.55 E-value=0.32 Score=46.28 Aligned_cols=27 Identities=33% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.-|+||||++..|+..+ ++.|+++.+.
T Consensus 7 ~~g~Gkt~~~~~la~~~-a~~g~~~~l~ 33 (217)
T cd02035 7 KGGVGKTTIAAATAVRL-AEEGKKVLLV 33 (217)
T ss_pred CCCchHHHHHHHHHHHH-HHCCCcEEEE
Confidence 56999999999999999 5889998776
No 65
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=89.24 E-value=0.18 Score=48.78 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEe
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~l 109 (507)
.=|.||||||+-|+.+| ++.| + ++.+
T Consensus 10 KGGvGKTT~a~nLA~~L-a~~G-r-VLli 35 (264)
T PRK13231 10 KGGIGKSTTVSNMAAAY-SNDH-R-VLVI 35 (264)
T ss_pred CCCCcHHHHHHHHhccc-CCCC-E-EEEE
Confidence 88999999999999999 5889 6 4444
No 66
>PRK13768 GTPase; Provisional
Probab=89.23 E-value=0.49 Score=46.58 Aligned_cols=39 Identities=31% Similarity=0.321 Sum_probs=31.9
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
+.|+|++. .|.||||++.+|+++| ...|+++.+.=-.|.
T Consensus 3 ~~i~v~G~----~G~GKTt~~~~~~~~l-~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGT----AGSGKTTLTKALSDWL-EEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECC----CCccHHHHHHHHHHHH-HhcCCceEEEECCCc
Confidence 45666653 8999999999999999 588999888777763
No 67
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=88.96 E-value=0.29 Score=45.34 Aligned_cols=32 Identities=38% Similarity=0.451 Sum_probs=25.8
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010562 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lR 110 (507)
|+||-.+.|||++|.||+++| .+.|.++. ..|
T Consensus 5 I~~t~t~vGKT~vslgL~~~l-~~~g~~v~-~~K 36 (199)
T PF13500_consen 5 ITGTDTGVGKTVVSLGLARAL-RRRGIKVG-YFK 36 (199)
T ss_dssp EEESSSSSSHHHHHHHHHHHH-HHTTSEEE-EEE
T ss_pred EEeCCCCCCHHHHHHHHHHHH-HhCCCceE-EEe
Confidence 457888999999999999999 57787743 344
No 68
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=88.94 E-value=0.39 Score=45.38 Aligned_cols=28 Identities=39% Similarity=0.701 Sum_probs=25.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|.+|+..+ ++|.||||.+.|+++||+
T Consensus 23 ~~g~Vv~L~G----dLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 23 KAGDVVLLSG----DLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCCCEEEEEc----CCcCChHHHHHHHHHHcC
Confidence 4688999988 799999999999999995
No 69
>PRK04296 thymidine kinase; Provisional
Probab=88.86 E-value=0.52 Score=44.24 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=34.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcccc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGi 120 (507)
|+++|+|| |-|.||||.+++++..+. .-|+++.+. -|++.+.+|.
T Consensus 2 g~i~litG----~~GsGKTT~~l~~~~~~~-~~g~~v~i~--k~~~d~~~~~ 46 (190)
T PRK04296 2 AKLEFIYG----AMNSGKSTELLQRAYNYE-ERGMKVLVF--KPAIDDRYGE 46 (190)
T ss_pred cEEEEEEC----CCCCHHHHHHHHHHHHHH-HcCCeEEEE--eccccccccC
Confidence 67888887 679999999999999883 568876654 4666665543
No 70
>PRK10818 cell division inhibitor MinD; Provisional
Probab=88.84 E-value=0.37 Score=46.50 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=28.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
+|.|.|+ -..-|.||||+++.|+-+| ++.|+++++.
T Consensus 2 ~kviav~---s~KGGvGKTt~a~nlA~~l-a~~g~~vllv 37 (270)
T PRK10818 2 ARIIVVT---SGKGGVGKTTSSAAIATGL-AQKGKKTVVI 37 (270)
T ss_pred ceEEEEE---eCCCCCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 3555555 4567999999999999999 5889997765
No 71
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=88.76 E-value=0.35 Score=46.99 Aligned_cols=27 Identities=48% Similarity=0.495 Sum_probs=23.2
Q ss_pred CCCCCCcchhHhhHHHHHhhh-cCCcEEE
Q 010562 80 TPLGEGKSTTTVGLCQALGAF-LDKKVVT 107 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~-lGk~a~~ 107 (507)
-.=|.|||||++-|+-+| ++ .|+++.+
T Consensus 9 ~KGGVGKTT~a~nLA~~L-a~~~G~rvLl 36 (275)
T PRK13233 9 GKGGIGKSTTTQNTAAAM-AYFHDKKVFI 36 (275)
T ss_pred cCCCCcHHHHHHHHHHHH-HHhcCCeEEE
Confidence 389999999999999999 56 6998554
No 72
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=88.71 E-value=0.53 Score=48.39 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=29.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
+.|++|++.| |-|+|||||+.-|+-.+ ...|+++.+
T Consensus 112 ~~~~vi~lvG----pnGsGKTTt~~kLA~~l-~~~g~~V~L 147 (318)
T PRK10416 112 KKPFVILVVG----VNGVGKTTTIGKLAHKY-KAQGKKVLL 147 (318)
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHH-HhcCCeEEE
Confidence 3578999988 77999999999999999 466776554
No 73
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=88.59 E-value=0.8 Score=41.97 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=27.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHH
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNA 474 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~ 474 (507)
....|++-++.+++|+||+||+-..- +++++.+.+.
T Consensus 110 ~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~ 145 (188)
T PF00009_consen 110 QTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEE 145 (188)
T ss_dssp HHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHH
T ss_pred ccccccccccccccceEEeeeeccch-hhhHHHHHHH
Confidence 56789999999999999999998665 6666555443
No 74
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=88.42 E-value=0.34 Score=43.83 Aligned_cols=41 Identities=27% Similarity=0.253 Sum_probs=31.2
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEE---EecCCCCCCcccccc
Q 010562 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIKG 122 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lGk~a~~---~lRePSlGP~FGiKG 122 (507)
++-..-|+||||++.-|+.+| +++.+ -+|.|++--.||+++
T Consensus 4 v~s~kgG~GKSt~a~nLA~~l-----~~vlliD~D~~~~~~~~~~~~~~ 47 (179)
T cd03110 4 VISGKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEI 47 (179)
T ss_pred EEcCCCCCCHHHHHHHHHHHH-----hCcEEEECCCCCCchhhhcCCCc
Confidence 344567999999999999988 44443 267888887788876
No 75
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=88.18 E-value=0.51 Score=48.67 Aligned_cols=132 Identities=20% Similarity=0.317 Sum_probs=82.6
Q ss_pred HHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeec-CceeEEcccccchhcccCchH
Q 010562 272 AVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLE-GTPVLVHAGPFANIAHGNSSI 350 (507)
Q Consensus 272 AIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlE-gtPa~VHgGPFANIAHG~nSv 350 (507)
++.|=-+-++.=+.++|+|+-+.+..|.|+.-..|++.=..++=|-+++|=+- .| .-.++|-+-|= -||+-+
T Consensus 108 ~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~a---~E~~~~~IIDsaaG----~gCpVi 180 (284)
T COG1149 108 SIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHA---KELADLLIIDSAAG----TGCPVI 180 (284)
T ss_pred eeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHhh---hhhcceeEEecCCC----CCChHH
Confidence 34555556677888999999999988878888888875444333333222110 01 23333333221 122211
Q ss_pred HHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHH
Q 010562 351 VADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVA 430 (507)
Q Consensus 351 iAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~ 430 (507)
| +++ | -|.+++|+ ||-
T Consensus 181 -~---sl~--------------~-------------------aD~ai~VT-------------------------EPT-- 196 (284)
T COG1149 181 -A---SLK--------------G-------------------ADLAILVT-------------------------EPT-- 196 (284)
T ss_pred -H---hhc--------------c-------------------CCEEEEEe-------------------------cCC--
Confidence 1 111 1 45677776 111
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEecCC-CCCCHHHHHHHHHHHHHcCCC
Q 010562 431 LVEAGCVNLARHIANTKAYGANVVVAVNMF-ATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 431 al~~G~~NL~kHIeni~~fGvpvVVAIN~F-~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
-.|+..|+|-+|-++.||+|++++|||+ +.|+ | |+++|++.|++
T Consensus 197 --p~glhD~kr~~el~~~f~ip~~iViNr~~~g~s--~---ie~~~~e~gi~ 241 (284)
T COG1149 197 --PFGLHDLKRALELVEHFGIPTGIVINRYNLGDS--E---IEEYCEEEGIP 241 (284)
T ss_pred --ccchhHHHHHHHHHHHhCCceEEEEecCCCCch--H---HHHHHHHcCCC
Confidence 2467789999999999999999999999 2333 4 56899999997
No 76
>PRK13976 thymidylate kinase; Provisional
Probab=88.14 E-value=0.57 Score=45.21 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=31.3
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
++|.+-|| -|.||||.+--|.+.|..+.|...+...|||+
T Consensus 1 ~fIv~EGi----DGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~ 40 (209)
T PRK13976 1 MFITFEGI----DGSGKTTQSRLLAEYLSDIYGENNVVLTREPG 40 (209)
T ss_pred CEEEEECC----CCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC
Confidence 46777776 59999999999999995333654566789997
No 77
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.86 E-value=0.54 Score=51.76 Aligned_cols=86 Identities=24% Similarity=0.395 Sum_probs=52.7
Q ss_pred ccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCccccccc
Q 010562 63 LEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHL 142 (507)
Q Consensus 63 ~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHf 142 (507)
+-.+|.| +||||| |.|+|||||--.+.+-|+ .-.++ ++++=.|===..=| ..|+-==+++.|-|
T Consensus 253 ~~~~p~G-liLvTG----PTGSGKTTTLY~~L~~ln-~~~~n-I~TiEDPVE~~~~g---------I~Q~qVN~k~gltf 316 (500)
T COG2804 253 LLNRPQG-LILVTG----PTGSGKTTTLYAALSELN-TPERN-IITIEDPVEYQLPG---------INQVQVNPKIGLTF 316 (500)
T ss_pred HHhCCCe-EEEEeC----CCCCCHHHHHHHHHHHhc-CCCce-EEEeeCCeeeecCC---------cceeecccccCCCH
Confidence 3345666 899998 669999999988888884 54555 88887763222212 23443333666654
Q ss_pred ----------------chhhhHHHHHHhHHHHHHHhhh
Q 010562 143 ----------------TGDIHAITAANNLLAAAIDTRI 164 (507)
Q Consensus 143 ----------------TGD~HAItaAnNLlaA~iDn~i 164 (507)
-|.|---..|.=.+-|++--|+
T Consensus 317 a~~LRa~LRqDPDvImVGEIRD~ETAeiavqAalTGHL 354 (500)
T COG2804 317 ARALRAILRQDPDVIMVGEIRDLETAEIAVQAALTGHL 354 (500)
T ss_pred HHHHHHHhccCCCeEEEeccCCHHHHHHHHHHHhcCCe
Confidence 3444444556555555555554
No 78
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.39 E-value=0.42 Score=43.04 Aligned_cols=43 Identities=33% Similarity=0.486 Sum_probs=31.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
||+|++.| |-|.||||.+.-|++-+. ........+.|+|..|.
T Consensus 1 g~ii~l~G----~~GsGKsTl~~~L~~~~~-~~~~~~~~~tr~~~~g~ 43 (180)
T TIGR03263 1 GLLIVISG----PSGVGKSTLVKALLEEDP-NLKFSISATTRKPRPGE 43 (180)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHHccCc-cccccccceeeCCCCCC
Confidence 68899998 779999998777766552 34444445678887664
No 79
>PRK13236 nitrogenase reductase; Reviewed
Probab=87.36 E-value=0.41 Score=47.97 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=27.3
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSl 114 (507)
.=|.||||+++-|+.+| ++.|+++.+.==.|-+
T Consensus 14 KGGVGKTt~a~NLA~~L-a~~G~rVLliD~D~q~ 46 (296)
T PRK13236 14 KGGIGKSTTSQNTLAAM-AEMGQRILIVGCDPKA 46 (296)
T ss_pred CCcCCHHHHHHHHHHHH-HHCCCcEEEEEccCCC
Confidence 78999999999999999 5789998776444443
No 80
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=87.30 E-value=0.6 Score=48.52 Aligned_cols=68 Identities=29% Similarity=0.288 Sum_probs=51.4
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC--CCCCccccccCCCCCCceeeecCcccccccchhhh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP--SQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP--SlGP~FGiKGGAaGGGysQViPmediNLHfTGD~H 147 (507)
++|++||- =|-||||++..++=.| +..|+++.+.-=.| |+|.+|+++= .-|..
T Consensus 3 riv~f~GK----GGVGKTT~aaA~A~~l-A~~g~kvLlvStDPAhsL~d~f~~el--------------------g~~~~ 57 (322)
T COG0003 3 RIVFFTGK----GGVGKTTIAAATAVKL-AESGKKVLLVSTDPAHSLGDVFDLEL--------------------GHDPR 57 (322)
T ss_pred EEEEEecC----CcccHHHHHHHHHHHH-HHcCCcEEEEEeCCCCchHhhhcccc--------------------CCchh
Confidence 58888885 5999999999999999 57898866666776 7777776532 25667
Q ss_pred HHHHHHhHHHHHHHhhh
Q 010562 148 AITAANNLLAAAIDTRI 164 (507)
Q Consensus 148 AItaAnNLlaA~iDn~i 164 (507)
+|+ .||-+..||...
T Consensus 58 ~I~--~nL~a~eiD~~~ 72 (322)
T COG0003 58 KVG--PNLDALELDPEK 72 (322)
T ss_pred hcC--CCCceeeecHHH
Confidence 777 888777777543
No 81
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=87.21 E-value=0.5 Score=40.39 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=28.1
Q ss_pred ecCCCCCCCCcchhHhhHHHHHhhhc-CCcEEEEecCCC
Q 010562 76 GITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCLRQPS 113 (507)
Q Consensus 76 aitPTP~GEGKTTttIGL~qaL~~~l-Gk~a~~~lRePS 113 (507)
++.-+.-|+||||++..|+-++ ++. |+++.+.==.|.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~-~~~~~~~~~l~d~d~~ 40 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVAL-AKEAGRRVLLVDLDLQ 40 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHH-HhcCCCcEEEEECCCC
Confidence 3455678999999999999999 477 888776533443
No 82
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=87.05 E-value=0.35 Score=44.13 Aligned_cols=34 Identities=32% Similarity=0.277 Sum_probs=29.6
Q ss_pred CCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010562 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 82 ~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~ 117 (507)
-|.||||.+--|.++| ...|.+ +...++|+-.|+
T Consensus 5 DGsGKtT~~~~L~~~l-~~~~~~-~~~~~~~~~~~~ 38 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEAL-KEKGYK-VIITFPPGSTPI 38 (186)
T ss_dssp TTSSHHHHHHHHHHHH-HHTTEE-EEEEESSTSSHH
T ss_pred CCCCHHHHHHHHHHHH-HHcCCc-ccccCCCCCChH
Confidence 5999999999999999 588988 888899886664
No 83
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=87.01 E-value=1.6 Score=42.29 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=29.0
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHH
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNA 474 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~ 474 (507)
.-.+|++-++.+|+|+||++|+..--.+++++...+.
T Consensus 126 ~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~ 162 (224)
T cd04165 126 MTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKD 162 (224)
T ss_pred HHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHH
Confidence 4677899999999999999999876566666555443
No 84
>PRK10436 hypothetical protein; Provisional
Probab=86.40 E-value=0.71 Score=49.98 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=30.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
..-+|||||-| |+|||||--.+...++ ..+ +.++++=.|-
T Consensus 217 ~~GliLvtGpT----GSGKTTtL~a~l~~~~-~~~-~~i~TiEDPv 256 (462)
T PRK10436 217 PQGLILVTGPT----GSGKTVTLYSALQTLN-TAQ-INICSVEDPV 256 (462)
T ss_pred cCCeEEEECCC----CCChHHHHHHHHHhhC-CCC-CEEEEecCCc
Confidence 35599999944 9999999988778884 545 4578888874
No 85
>PRK14974 cell division protein FtsY; Provisional
Probab=86.29 E-value=0.92 Score=47.28 Aligned_cols=36 Identities=31% Similarity=0.222 Sum_probs=28.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
...++|+++| |-|.|||||..-|+..|. ..|+++.+
T Consensus 138 ~~~~vi~~~G----~~GvGKTTtiakLA~~l~-~~g~~V~l 173 (336)
T PRK14974 138 GKPVVIVFVG----VNGTGKTTTIAKLAYYLK-KNGFSVVI 173 (336)
T ss_pred CCCeEEEEEc----CCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 3467999999 569999999999999994 66766543
No 86
>PRK08233 hypothetical protein; Provisional
Probab=86.23 E-value=0.51 Score=42.14 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+++|.|+|. | |.||||++--|++.|
T Consensus 3 ~~iI~I~G~---~-GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAV---S-GGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECC---C-CCCHHHHHHHHHhhC
Confidence 578888882 3 999999999998887
No 87
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=86.02 E-value=0.62 Score=38.50 Aligned_cols=32 Identities=41% Similarity=0.412 Sum_probs=25.7
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
.-|.||||++..|++.| ++.|+++.+.==.|+
T Consensus 8 kgG~Gkst~~~~la~~~-~~~~~~vl~~d~d~~ 39 (104)
T cd02042 8 KGGVGKTTTAVNLAAAL-ARRGKRVLLIDLDPQ 39 (104)
T ss_pred CCCcCHHHHHHHHHHHH-HhCCCcEEEEeCCCC
Confidence 45999999999999999 478888766645555
No 88
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=86.02 E-value=0.66 Score=46.62 Aligned_cols=52 Identities=27% Similarity=0.300 Sum_probs=38.1
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~H 147 (507)
|.|.|.++ .=|.||||+|..|+.+| +++|+++.+. -.-|-....|||.=|+.
T Consensus 2 ~~iai~s~---kGGvG~TTltAnLA~aL-~~~G~~VlaI----------------------D~dpqN~Lrlhfg~~~~ 53 (243)
T PF06564_consen 2 KVIAIVSP---KGGVGKTTLTANLAWAL-ARLGESVLAI----------------------DLDPQNLLRLHFGLPLD 53 (243)
T ss_pred cEEEEecC---CCCCCHHHHHHHHHHHH-HHCCCcEEEE----------------------eCCcHHHHHHhcCCCCc
Confidence 34555544 57999999999999999 6999986653 34455666778776663
No 89
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=85.76 E-value=1.1 Score=39.29 Aligned_cols=33 Identities=36% Similarity=0.322 Sum_probs=24.9
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
|+|.|++- --|.||||++..|+..| ++.|++++
T Consensus 1 k~i~v~s~---~~g~G~t~~a~~lA~~l-a~~~~~Vl 33 (157)
T PF13614_consen 1 KVIAVWSP---KGGVGKTTLALNLAAAL-ARKGKKVL 33 (157)
T ss_dssp EEEEEEES---STTSSHHHHHHHHHHHH-HHTTT-EE
T ss_pred CEEEEECC---CCCCCHHHHHHHHHHHH-HhcCCCeE
Confidence 45666553 45899999999999999 58887744
No 90
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=85.61 E-value=1 Score=45.18 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=22.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+++|++.| | -|.|||||...|+..+.
T Consensus 193 ~~~vi~~vG--p--tGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVG--P--TGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEEC--C--CCCCHHHHHHHHHHHHH
Confidence 577888886 4 49999999999999984
No 91
>PRK05480 uridine/cytidine kinase; Provisional
Probab=85.56 E-value=1 Score=42.03 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++.+|.++| |-|.||||++.-|.+.|
T Consensus 5 ~~~iI~I~G----~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAG----GSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 467899999 77999999998887665
No 92
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=85.55 E-value=0.57 Score=45.09 Aligned_cols=32 Identities=38% Similarity=0.339 Sum_probs=25.5
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010562 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lR 110 (507)
|++|-.|.|||++|.||.++| .+.|.++. .+|
T Consensus 7 It~t~t~vGKT~vt~~L~~~l-~~~g~~v~-~~K 38 (231)
T PRK12374 7 ITGTDTSVGKTVVSRALLQAL-ASQGKTVA-GYK 38 (231)
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHCCCeEE-EEC
Confidence 346778999999999999999 57787744 354
No 93
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.04 E-value=0.76 Score=41.46 Aligned_cols=28 Identities=36% Similarity=0.288 Sum_probs=22.9
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEe
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~l 109 (507)
|.|+||||++.-|+..+. ..|++..++=
T Consensus 8 ~~G~GKTt~~~~la~~~~-~~g~~v~~i~ 35 (173)
T cd03115 8 LQGVGKTTTAAKLALYLK-KKGKKVLLVA 35 (173)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCcEEEEE
Confidence 679999999999999994 6687765543
No 94
>PRK07933 thymidylate kinase; Validated
Probab=84.90 E-value=1.4 Score=42.32 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=32.4
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlG 115 (507)
++|.+-|+ -|.||||.+--|++.|. ..|.+ ++..|+|..|
T Consensus 1 ~~IviEG~----dGsGKST~~~~L~~~L~-~~g~~-v~~~~~P~~~ 40 (213)
T PRK07933 1 MLIAIEGV----DGAGKRTLTEALRAALE-ARGRS-VATLAFPRYG 40 (213)
T ss_pred CEEEEEcC----CCCCHHHHHHHHHHHHH-HCCCe-EEEEecCCCC
Confidence 46777776 59999999999999995 66876 6778999644
No 95
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=84.83 E-value=0.86 Score=44.55 Aligned_cols=35 Identities=34% Similarity=0.408 Sum_probs=27.5
Q ss_pred ecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 76 aitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
++.-..=|.|||||++-|+.+| ++.|+++.+.==.
T Consensus 5 ~v~n~KGGvGKTT~a~nLA~~l-a~~G~~VlliD~D 39 (231)
T PRK13849 5 TFCSFKGGAGKTTALMGLCAAL-ASDGKRVALFEAD 39 (231)
T ss_pred EEECCCCCccHHHHHHHHHHHH-HhCCCcEEEEeCC
Confidence 3445678999999999999999 5889887655333
No 96
>PRK10867 signal recognition particle protein; Provisional
Probab=84.78 E-value=1.1 Score=48.41 Aligned_cols=36 Identities=31% Similarity=0.290 Sum_probs=28.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhc-CCcEEEEe
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCL 109 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~l-Gk~a~~~l 109 (507)
.++|++++ |.|+|||||+.-|+..|. .. |+++.+.=
T Consensus 100 p~vI~~vG----~~GsGKTTtaakLA~~l~-~~~G~kV~lV~ 136 (433)
T PRK10867 100 PTVIMMVG----LQGAGKTTTAGKLAKYLK-KKKKKKVLLVA 136 (433)
T ss_pred CEEEEEEC----CCCCcHHHHHHHHHHHHH-HhcCCcEEEEE
Confidence 46788886 779999999999999994 66 88776543
No 97
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.62 E-value=0.62 Score=44.73 Aligned_cols=29 Identities=41% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
..=|.||||||+=|+-+|..+-|+++.+.
T Consensus 10 ~KGGvGKTT~a~nLa~~La~~~~~kVLli 38 (259)
T COG1192 10 QKGGVGKTTTAVNLAAALAKRGGKKVLLI 38 (259)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCcEEEE
Confidence 46799999999999999942445665543
No 98
>PRK00889 adenylylsulfate kinase; Provisional
Probab=84.54 E-value=1.3 Score=40.26 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=28.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
+.|++|+++|. .|.||||++.-|++.|. .-|.+.
T Consensus 2 ~~g~~i~~~G~----~GsGKST~a~~la~~l~-~~g~~v 35 (175)
T PRK00889 2 QRGVTVWFTGL----SGAGKTTIARALAEKLR-EAGYPV 35 (175)
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHHH-HcCCeE
Confidence 56999999996 59999999999999994 555543
No 99
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=84.35 E-value=0.88 Score=44.00 Aligned_cols=35 Identities=29% Similarity=0.218 Sum_probs=27.1
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccc
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFN 139 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediN 139 (507)
|-|.||||++--|.+.|. ... +++...+++|+++.
T Consensus 7 ~sGSGKTTla~~L~~~l~-~~~-----------------------~~~~v~vi~~D~f~ 41 (220)
T cd02025 7 SVAVGKSTTARVLQALLS-RWP-----------------------DHPNVELITTDGFL 41 (220)
T ss_pred CCCCCHHHHHHHHHHHHh-hcC-----------------------CCCcEEEEecCccc
Confidence 679999999999988883 321 24567899999983
No 100
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=83.03 E-value=0.7 Score=50.30 Aligned_cols=26 Identities=42% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 78 TPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 78 tPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
--|-.|.||||+|+||..||. +.|.+
T Consensus 6 Ag~~SG~GKTTvT~glm~aL~-~rg~~ 31 (451)
T COG1797 6 AGTSSGSGKTTVTLGLMRALR-RRGLK 31 (451)
T ss_pred ecCCCCCcHHHHHHHHHHHHH-hcCCc
Confidence 347789999999999999994 77766
No 101
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.81 E-value=1.5 Score=47.43 Aligned_cols=35 Identities=31% Similarity=0.274 Sum_probs=27.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
..+++|+++| || |.|||||...|+..+. ..|+++.
T Consensus 204 ~~~~ii~lvG--pt--GvGKTTt~akLA~~l~-~~g~~V~ 238 (407)
T PRK12726 204 SNHRIISLIG--QT--GVGKTTTLVKLGWQLL-KQNRTVG 238 (407)
T ss_pred cCCeEEEEEC--CC--CCCHHHHHHHHHHHHH-HcCCeEE
Confidence 3588999988 55 9999999999998873 5576543
No 102
>PLN00043 elongation factor 1-alpha; Provisional
Probab=82.70 E-value=2.7 Score=45.17 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=49.4
Q ss_pred ccccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHH---hhHHHHHHHHhhcCCc
Q 010562 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---VNLARHIANTKAYGAN 452 (507)
Q Consensus 377 GaEKF~dIKCR~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~---~NL~kHIeni~~fGvp 452 (507)
|-|+|+ +...+|+. .|++|||.-... |.. +.|+ ....+|+.-++.+|+|
T Consensus 94 Gh~df~--~~~~~g~~~aD~aIlVVda~~----G~~---------------------e~g~~~~~qT~eh~~~~~~~gi~ 146 (447)
T PLN00043 94 GHRDFI--KNMITGTSQADCAVLIIDSTT----GGF---------------------EAGISKDGQTREHALLAFTLGVK 146 (447)
T ss_pred CHHHHH--HHHHhhhhhccEEEEEEEccc----Cce---------------------ecccCCCchHHHHHHHHHHcCCC
Confidence 446665 35555555 899999986542 211 1112 2568899999999996
Q ss_pred -EEEEecCCCCCC----HHH----HHHHHHHHHHcCC
Q 010562 453 -VVVAVNMFATDS----KAE----LNAVRNAAMAAGA 480 (507)
Q Consensus 453 -vVVAIN~F~tDT----~~E----i~~v~~~~~~~g~ 480 (507)
+||++|+-...+ ++. ++.+++++++.|.
T Consensus 147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~ 183 (447)
T PLN00043 147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 183 (447)
T ss_pred cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 588999975321 121 4557777777784
No 103
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=82.44 E-value=1.7 Score=44.76 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=32.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
.+.+|+|+| |-|.|||||.-.|...+. ...+..++++-+|
T Consensus 121 ~~g~ili~G----~tGSGKTT~l~al~~~i~-~~~~~~i~tiEdp 160 (343)
T TIGR01420 121 PRGLILVTG----PTGSGKSTTLASMIDYIN-KNAAGHIITIEDP 160 (343)
T ss_pred cCcEEEEEC----CCCCCHHHHHHHHHHhhC-cCCCCEEEEEcCC
Confidence 478999998 459999999999988884 4445568888887
No 104
>PRK00131 aroK shikimate kinase; Reviewed
Probab=82.10 E-value=1.2 Score=39.20 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=24.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.++.|+++|+ .|.||||++..|++.|+
T Consensus 2 ~~~~~i~l~G~----~GsGKstla~~La~~l~ 29 (175)
T PRK00131 2 LKGPNIVLIGF----MGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCCeEEEEcC----CCCCHHHHHHHHHHHhC
Confidence 35789999995 69999999999999884
No 105
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=81.25 E-value=1.8 Score=46.75 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=28.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
..+|+++| |-|+|||||+.-|+..| ...|+++.++
T Consensus 95 p~vI~lvG----~~GsGKTTtaakLA~~L-~~~g~kV~lV 129 (437)
T PRK00771 95 PQTIMLVG----LQGSGKTTTAAKLARYF-KKKGLKVGLV 129 (437)
T ss_pred CeEEEEEC----CCCCcHHHHHHHHHHHH-HHcCCeEEEe
Confidence 46888888 67999999999999999 4678776654
No 106
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=81.23 E-value=1.6 Score=46.67 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=45.9
Q ss_pred cccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHH---hhHHHHHHHHhhcCCc-
Q 010562 378 AEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---VNLARHIANTKAYGAN- 452 (507)
Q Consensus 378 aEKF~dIKCR~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~---~NL~kHIeni~~fGvp- 452 (507)
-++| +++..+|+. .|++|||.-... |. .++|+ ....+|+.-++.+|+|
T Consensus 95 h~~f--~~~~~~g~~~aD~ailVVda~~-----G~--------------------~e~~~~~~~qT~eh~~~~~~~gi~~ 147 (446)
T PTZ00141 95 HRDF--IKNMITGTSQADVAILVVASTA-----GE--------------------FEAGISKDGQTREHALLAFTLGVKQ 147 (446)
T ss_pred hHHH--HHHHHHhhhhcCEEEEEEEcCC-----Cc--------------------eecccCCCccHHHHHHHHHHcCCCe
Confidence 4566 467777776 899999875321 21 11222 2678999999999999
Q ss_pred EEEEecCCCCC----CHHHHHHHHHHH
Q 010562 453 VVVAVNMFATD----SKAELNAVRNAA 475 (507)
Q Consensus 453 vVVAIN~F~tD----T~~Ei~~v~~~~ 475 (507)
+||+||+-..+ +++.++.+.+..
T Consensus 148 iiv~vNKmD~~~~~~~~~~~~~i~~~i 174 (446)
T PTZ00141 148 MIVCINKMDDKTVNYSQERYDEIKKEV 174 (446)
T ss_pred EEEEEEccccccchhhHHHHHHHHHHH
Confidence 56999998732 345555544433
No 107
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=80.67 E-value=1.3 Score=43.69 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=21.7
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
|+|.||||.+-++.|=+ ...|+++.+.
T Consensus 4 paGSGKTT~~~~~~~~~-~~~~~~~~~v 30 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWL-ESNGRDVYIV 30 (238)
T ss_dssp STTSSHHHHHHHHHHHH-TTT-S-EEEE
T ss_pred CCCCCHHHHHHHHHHHH-HhccCCceEE
Confidence 89999999999999999 5778776654
No 108
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=80.55 E-value=1.2 Score=47.51 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=25.5
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
|+-|..|.||||+|.||+++| ++.|.++...
T Consensus 4 I~gT~t~vGKT~vt~~L~~~L-~~~G~~V~~f 34 (449)
T TIGR00379 4 IAGTSSGVGKTTISTGIMKAL-SRRKLRVQPF 34 (449)
T ss_pred EEeCCCCCcHHHHHHHHHHHH-HHCCCceeEE
Confidence 345778999999999999999 5889885543
No 109
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=80.48 E-value=2.3 Score=41.54 Aligned_cols=35 Identities=34% Similarity=0.419 Sum_probs=30.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
.+|=.|-+|+.+ |+||||++..|.|+|. ..|+-+.
T Consensus 29 qkGcviWiTGLS----gSGKStlACaL~q~L~-qrgkl~Y 63 (207)
T KOG0635|consen 29 QKGCVIWITGLS----GSGKSTLACALSQALL-QRGKLTY 63 (207)
T ss_pred CCCcEEEEeccC----CCCchhHHHHHHHHHH-hcCceEE
Confidence 569999999996 8999999999999995 6687765
No 110
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=80.25 E-value=2 Score=38.13 Aligned_cols=32 Identities=31% Similarity=0.279 Sum_probs=26.7
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
-.-|+||||++.+|+..+ +..|+++.+.=-.|
T Consensus 7 ~kgg~gkt~~~~~~a~~~-~~~~~~~~~vd~D~ 38 (139)
T cd02038 7 GKGGVGKTNISANLALAL-AKLGKRVLLLDADL 38 (139)
T ss_pred CCCCCcHHHHHHHHHHHH-HHCCCcEEEEECCC
Confidence 378999999999999999 47898877765554
No 111
>PRK03846 adenylylsulfate kinase; Provisional
Probab=80.15 E-value=2.2 Score=39.90 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=27.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.|++|.++|.+ |.||||++--|.+.|. ..|..++
T Consensus 22 ~~~~~i~i~G~~----GsGKSTla~~l~~~l~-~~~~~~~ 56 (198)
T PRK03846 22 HKGVVLWFTGLS----GSGKSTVAGALEEALH-ELGVSTY 56 (198)
T ss_pred CCCEEEEEECCC----CCCHHHHHHHHHHHHH-hCCCCEE
Confidence 568999999974 9999999999988883 4465443
No 112
>PTZ00301 uridine kinase; Provisional
Probab=80.02 E-value=1.6 Score=42.39 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.1
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~ 100 (507)
++|-|+| |.|+||||++-.|.+.|+.+
T Consensus 4 ~iIgIaG----~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 4 TVIGISG----ASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred EEEEEEC----CCcCCHHHHHHHHHHHHHhh
Confidence 5777887 46999999999999998533
No 113
>PRK06696 uridine kinase; Validated
Probab=79.87 E-value=2 Score=41.06 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lG 102 (507)
-.+|.|+| +-|.||||++--|++.|+ ..|
T Consensus 22 ~~iI~I~G----~sgsGKSTlA~~L~~~l~-~~g 50 (223)
T PRK06696 22 PLRVAIDG----ITASGKTTFADELAEEIK-KRG 50 (223)
T ss_pred ceEEEEEC----CCCCCHHHHHHHHHHHHH-HcC
Confidence 45888888 679999999999999995 434
No 114
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=79.37 E-value=2.8 Score=39.72 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=27.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
..++++|+| |+|.||||+..-+.+++. .-|++.+++
T Consensus 17 ~~~~~~l~G----~aGtGKT~~l~~~~~~~~-~~g~~v~~~ 52 (196)
T PF13604_consen 17 GDRVSVLQG----PAGTGKTTLLKALAEALE-AAGKRVIGL 52 (196)
T ss_dssp TCSEEEEEE----STTSTHHHHHHHHHHHHH-HTT--EEEE
T ss_pred CCeEEEEEE----CCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 457999988 699999999999999994 556555543
No 115
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=79.30 E-value=1.5 Score=39.06 Aligned_cols=28 Identities=29% Similarity=0.220 Sum_probs=22.0
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lR 110 (507)
-.|.||||+|.||...| ++.|.++. ++|
T Consensus 7 ~~~~Gkt~~~~~l~~~l-~~~~~~v~-~~k 34 (134)
T cd03109 7 GTDIGKTVATAILARAL-KEKGYRVA-PLK 34 (134)
T ss_pred CCCcCHHHHHHHHHHHH-HHCCCeEE-EEe
Confidence 35699999999999999 57777744 444
No 116
>PRK05541 adenylylsulfate kinase; Provisional
Probab=79.03 E-value=3.1 Score=37.78 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=28.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
++|++|+++|+ .|.||||++.-|...|. .-+..++
T Consensus 5 ~~~~~I~i~G~----~GsGKst~a~~l~~~l~-~~~~~~~ 39 (176)
T PRK05541 5 PNGYVIWITGL----AGSGKTTIAKALYERLK-LKYSNVI 39 (176)
T ss_pred CCCCEEEEEcC----CCCCHHHHHHHHHHHHH-HcCCcEE
Confidence 56899999996 59999999999999994 4455543
No 117
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=78.97 E-value=2.6 Score=39.73 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=28.3
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
+|+|+| |-|.||||+.-.|...+. .-.+..++++.+|-
T Consensus 3 lilI~G----ptGSGKTTll~~ll~~~~-~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTG----PTGSGKSTTLAAMIDYIN-KNKTHHILTIEDPI 40 (198)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHhh-hcCCcEEEEEcCCc
Confidence 567776 569999999998888884 33345677887764
No 118
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=78.38 E-value=1.5 Score=47.18 Aligned_cols=39 Identities=33% Similarity=0.474 Sum_probs=28.9
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~F 118 (507)
|+|| .|-.|.||||+|.||.++| .+.|.++... .| ||-+
T Consensus 4 ~~i~---~~~s~~GKT~vt~gl~~~l-~~~g~~v~~~--K~--Gpd~ 42 (433)
T PRK13896 4 FVLG---GTSSGVGKTVATLATIRAL-EDAGYAVQPA--KA--GPDF 42 (433)
T ss_pred EEEE---eCCCCCCHHHHHHHHHHHH-HHCCCeeEEE--ee--CCCC
Confidence 4555 5678999999999999999 5788876432 33 7653
No 119
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=78.30 E-value=1.8 Score=40.66 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=22.9
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+|.|.+|.++| |-|.||||++--|++.|
T Consensus 3 ~~~g~vi~I~G----~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGG----GSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 47799999999 67999999876666555
No 120
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=78.20 E-value=6.9 Score=42.70 Aligned_cols=39 Identities=28% Similarity=0.513 Sum_probs=29.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
+.| +|+||| |-|+|||||.-.+.+.++ .-+ ..++++=.|
T Consensus 241 ~~G-lilitG----ptGSGKTTtL~a~L~~l~-~~~-~~iiTiEDp 279 (486)
T TIGR02533 241 PHG-IILVTG----PTGSGKTTTLYAALSRLN-TPE-RNILTVEDP 279 (486)
T ss_pred CCC-EEEEEc----CCCCCHHHHHHHHHhccC-CCC-CcEEEEcCC
Confidence 444 999998 459999999988878784 444 447777665
No 121
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=78.11 E-value=2.6 Score=39.47 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=30.2
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
-+.|.+++|+| |.|.||||.+.-++..+. ..|.+++.
T Consensus 16 i~~g~i~~i~G----~~GsGKT~l~~~~a~~~~-~~g~~v~y 52 (218)
T cd01394 16 VERGTVTQVYG----PPGTGKTNIAIQLAVETA-GQGKKVAY 52 (218)
T ss_pred ccCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hcCCeEEE
Confidence 36799999999 779999999999988873 55766543
No 122
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=77.60 E-value=2.5 Score=39.84 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
+|..|.+||. .|.||||++-.|.+-| ...|.++..-
T Consensus 1 ~g~vIwltGl----sGsGKtTlA~~L~~~L-~~~g~~~~~L 36 (156)
T PF01583_consen 1 KGFVIWLTGL----SGSGKTTLARALERRL-FARGIKVYLL 36 (156)
T ss_dssp S-EEEEEESS----TTSSHHHHHHHHHHHH-HHTTS-EEEE
T ss_pred CCEEEEEECC----CCCCHHHHHHHHHHHH-HHcCCcEEEe
Confidence 3678999997 4999999999999999 4778887653
No 123
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=77.42 E-value=40 Score=29.66 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcCCCCeEEeecccccccc---cccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCccccc
Q 010562 349 SIVADKIALKLVGPGGFVVTEAGFGADIG---AEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYL 425 (507)
Q Consensus 349 SviAtk~ALkLag~~dyVVTEAGFGaDlG---aEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~ 425 (507)
+.++.++.-... ++-|+-.|++-+.- .+++-. -....+||.|||-. |......
T Consensus 24 ~~l~~~l~~~~~---~~~v~n~g~~G~~~~~~~~~l~~---~~~~~~pd~v~i~~---------G~ND~~~--------- 79 (177)
T cd01822 24 ALLQKRLDARGI---DVTVINAGVSGDTTAGGLARLPA---LLAQHKPDLVILEL---------GGNDGLR--------- 79 (177)
T ss_pred HHHHHHHHHhCC---CeEEEecCcCCcccHHHHHHHHH---HHHhcCCCEEEEec---------cCccccc---------
Confidence 455555543323 67777777765432 233221 12336899887765 4332111
Q ss_pred ccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCC-----CHHHHHHHHHHHHHcCCC
Q 010562 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATD-----SKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 426 ~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tD-----T~~Ei~~v~~~~~~~g~~ 481 (507)
..+.+..++ ||++=|+.+++.+.++|+.--..+.. .++=-+.+++.|++.++.
T Consensus 80 ~~~~~~~~~---~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 137 (177)
T cd01822 80 GIPPDQTRA---NLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVP 137 (177)
T ss_pred CCCHHHHHH---HHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCc
Confidence 234455555 45555666777788877752112221 122235667889998986
No 124
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=77.39 E-value=1.9 Score=45.80 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=56.2
Q ss_pred hcccCceeeecc-hhhhhccC--CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcccccc
Q 010562 46 DLYGKYKAKVLL-SVLDELEG--SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKG 122 (507)
Q Consensus 46 e~YG~~kAKi~l-~~l~~~~~--~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKG 122 (507)
+.||.++++-.+ +.++.... ....|+++.+| |-|.||||++--|+.+|+ +. .|+ .-||.|-+||
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~G----PPGsGKStla~~La~~l~-~y-------s~t-~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLG----PVGGGKSSLVECLKRGLE-EY-------SKT-PEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEC----CCCCCHHHHHHHHHHHHh-hh-------ccc-ccCceEEEEe
Confidence 578888886554 34433221 23457888887 779999999999999995 32 344 3699999988
Q ss_pred CCCCCCceeeecCcccccccc
Q 010562 123 GAAGGGYSQVIPMDEFNLHLT 143 (507)
Q Consensus 123 GAaGGGysQViPmediNLHfT 143 (507)
+. ..-||-|-=||+-
T Consensus 119 ~~------~~sp~~e~Pl~l~ 133 (361)
T smart00763 119 NG------EESPMHEDPLHLF 133 (361)
T ss_pred cC------CCCCCccCCcccC
Confidence 65 5568888777764
No 125
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=77.15 E-value=2.9 Score=38.81 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=26.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
|.|.+++|+| |.|.||||.+.-++-... +.|.+
T Consensus 10 ~~g~i~~i~G----~~GsGKT~l~~~~~~~~~-~~g~~ 42 (209)
T TIGR02237 10 ERGTITQIYG----PPGSGKTNICMILAVNAA-RQGKK 42 (209)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hCCCe
Confidence 6799999999 789999999987776663 34443
No 126
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=77.06 E-value=2.3 Score=46.92 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=29.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
.-+|||||-| |+|||||--.+...++ ... ..++++-.|-
T Consensus 316 ~Glilv~G~t----GSGKTTtl~a~l~~~~-~~~-~~i~tiEdpv 354 (564)
T TIGR02538 316 QGMVLVTGPT----GSGKTVSLYTALNILN-TEE-VNISTAEDPV 354 (564)
T ss_pred CCeEEEECCC----CCCHHHHHHHHHHhhC-CCC-ceEEEecCCc
Confidence 4489999944 9999999888777773 443 4588888873
No 127
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=77.02 E-value=3.3 Score=43.40 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=33.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcC-CcEEEEecCCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD-KKVVTCLRQPSQ 114 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lG-k~a~~~lRePSl 114 (507)
.+.+|+||| |-|.|||||.-.|.+-++...+ ...++++-.|.-
T Consensus 133 ~~glilI~G----pTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE 176 (358)
T TIGR02524 133 QEGIVFITG----ATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE 176 (358)
T ss_pred cCCEEEEEC----CCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce
Confidence 578999999 4599999999999888853333 346888888764
No 128
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=76.90 E-value=13 Score=33.03 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=52.5
Q ss_pred CeEEeeccccccc---ccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHH
Q 010562 364 GFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 440 (507)
Q Consensus 364 dyVVTEAGFGaDl---GaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~ 440 (507)
++.|...|.+.+- ..+++-.+. ..+||.|||-. |..... ...+.+..++++.+|.
T Consensus 21 ~~~v~n~g~~G~~~~~~~~~l~~~~----~~~pd~vvl~~---------G~ND~~---------~~~~~~~~~~~l~~li 78 (169)
T cd01828 21 DVKVANRGISGDTTRGLLARLDEDV----ALQPKAIFIMI---------GINDLA---------QGTSDEDIVANYRTIL 78 (169)
T ss_pred CCceEecCcccccHHHHHHHHHHHh----ccCCCEEEEEe---------eccCCC---------CCCCHHHHHHHHHHHH
Confidence 5555555555443 223322222 46899998876 443321 1245677777777776
Q ss_pred HHHHHHhhcCCcEEEEecCCCC-----CCHH----HHHHHHHHHHHcCCC
Q 010562 441 RHIANTKAYGANVVVAVNMFAT-----DSKA----ELNAVRNAAMAAGAF 481 (507)
Q Consensus 441 kHIeni~~fGvpvVVAIN~F~t-----DT~~----Ei~~v~~~~~~~g~~ 481 (507)
+.+... .-+.+||+. .-.+. ...+ --+.++++|++.|+.
T Consensus 79 ~~~~~~-~~~~~vi~~-~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~ 126 (169)
T cd01828 79 EKLRKH-FPNIKIVVQ-SILPVGELKSIPNEQIEELNRQLAQLAQQEGVT 126 (169)
T ss_pred HHHHHH-CCCCeEEEE-ecCCcCccCcCCHHHHHHHHHHHHHHHHHCCCE
Confidence 555433 257776663 33333 2333 345578889988886
No 129
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=76.65 E-value=6.4 Score=41.45 Aligned_cols=49 Identities=22% Similarity=0.292 Sum_probs=39.5
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
.|+.+|+-++++|..+.|++|-|..+.+.| .+.+.++ .+.|+..+++++
T Consensus 50 ~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l-~e~GvDaviv~D 100 (347)
T COG0826 50 DLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRL-VELGVDAVIVAD 100 (347)
T ss_pred HHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHH-HHcCCCEEEEcC
Confidence 588999999999999999999999888777 4555555 469997565554
No 130
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=76.14 E-value=1.8 Score=43.40 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=24.4
Q ss_pred CCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 79 PTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
-+.=|.||||+.+.|+.+| ++.|+++.+-
T Consensus 8 s~KGGaGKTT~~~~LAs~l-a~~G~~V~lI 36 (231)
T PF07015_consen 8 SSKGGAGKTTAAMALASEL-AARGARVALI 36 (231)
T ss_pred cCCCCCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 3578999999999999999 5889876653
No 131
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=75.98 E-value=3 Score=45.40 Aligned_cols=97 Identities=22% Similarity=0.330 Sum_probs=63.6
Q ss_pred CHHHHHHHcCCCC-cchhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 30 HISEIAQELNLKP-NHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 30 ~I~~iA~~lGi~~-~~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
|+-+.|++.|++. .|+|.+=+ .. +..+.|-|||.| ||||||-=+++-| +..|.++.+
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r------------~~--~~~p~vaITGTN------GKTTTTsli~~~l-~~~G~~~~l- 141 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYR------------LS--GEAPIVAITGTN------GKTTTTSLIAHLL-KAAGLDALL- 141 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHH------------hc--CCCCEEEEECCC------chHHHHHHHHHHH-HhcCCCcee-
Confidence 5677788888863 34444322 11 235599999987 9999999999999 589998775
Q ss_pred ecCCCCCCccccccCCCCCCceeeec-----------CcccccccchhhhHHHH-HHhHHHHHHH
Q 010562 109 LRQPSQGPTFGIKGGAAGGGYSQVIP-----------MDEFNLHLTGDIHAITA-ANNLLAAAID 161 (507)
Q Consensus 109 lRePSlGP~FGiKGGAaGGGysQViP-----------mediNLHfTGD~HAIta-AnNLlaA~iD 161 (507)
||=-|..-+++.+ +..|-||.|=.|..--+ =-|+-..=+|
T Consensus 142 -------------gGNIG~p~l~~~~~~~~~d~~VlElSSfQL~~~~~~~P~iavilNi~~DHLD 193 (448)
T COG0771 142 -------------GGNIGTPALELLEQAEPADVYVLELSSFQLETTSSLRPEIAVILNISEDHLD 193 (448)
T ss_pred -------------ccccCccHHHhhcccCCCCEEEEEccccccccCccCCccEEEEecCCHHHhh
Confidence 4555655555443 55788988876654322 2344444444
No 132
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=75.47 E-value=2.2 Score=38.66 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=21.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|++|+|+| |.|.||||++-.|+..+.
T Consensus 1 ~~~~~i~G----~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVG----PSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 56888888 569999999998888773
No 133
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=75.40 E-value=9.7 Score=38.92 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=42.0
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccc
Q 010562 437 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 492 (507)
Q Consensus 437 ~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~G 492 (507)
....+-|+++++.|++|.|-.--|..++.+|++.+.+++.+.|+..+.++..+..|
T Consensus 149 ~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 149 DRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 34444455666789987765555778999999999999999999767777666554
No 134
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=74.89 E-value=1.7 Score=46.32 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=26.6
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
-|+||+ |.-|.||||+|.||+++| ++.|.++..
T Consensus 5 ~i~I~g---t~s~~GKT~it~~L~~~L-~~~G~~V~~ 37 (451)
T PRK01077 5 ALVIAA---PASGSGKTTVTLGLMRAL-RRRGLRVQP 37 (451)
T ss_pred EEEEEe---CCCCCcHHHHHHHHHHHH-HhCCCCcce
Confidence 467766 568999999999999999 578976543
No 135
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=74.61 E-value=2.1 Score=34.29 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=20.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+..+++.| |.|.||||++..|++.+.
T Consensus 2 ~~~~~l~G----~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVG----PPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEEC----CCCCcHHHHHHHHHhccC
Confidence 34566665 689999999999988884
No 136
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=74.33 E-value=8.2 Score=38.65 Aligned_cols=101 Identities=16% Similarity=0.269 Sum_probs=66.7
Q ss_pred HHHHHHHhc-CCCCeEEeecccccccccccccccccccCCCCcceEE---EEeeeh-HHHhcCCCCCccCCCCCcccccc
Q 010562 352 ADKIALKLV-GPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV---IVATIR-ALKMHGGGPQVVAGKPLDHAYLN 426 (507)
Q Consensus 352 Atk~ALkLa-g~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavV---lVaTvR-ALK~HGG~~~~~~g~pL~~~l~~ 426 (507)
-+++.-|.. |. ||+||-..|.++. +++|++ +||..|+..-.++ -+.+.+ +++|.- . +|-.+|+++.+
T Consensus 147 ~~~L~~K~~aGA-~f~iTQ~~fd~~~-~~~~~~-~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~-~----~Gv~vP~~~~~ 218 (272)
T TIGR00676 147 IENLKRKVDAGA-DYAITQLFFDNDD-YYRFVD-RCRAAGIDVPIIPGIMPITNFKQLLRFAE-R----CGAEIPAWLVK 218 (272)
T ss_pred HHHHHHHHHcCC-CeEeeccccCHHH-HHHHHH-HHHHcCCCCCEecccCCcCCHHHHHHHHh-c----cCCCCCHHHHH
Confidence 345556653 44 7999999999986 778888 8999988743322 134445 445543 2 33345554433
Q ss_pred ------cCHHHH-HHHHhhHHHHHHHHhhcCCc--EEEEecCC
Q 010562 427 ------ENVALV-EAGCVNLARHIANTKAYGAN--VVVAVNMF 460 (507)
Q Consensus 427 ------enl~al-~~G~~NL~kHIeni~~fGvp--vVVAIN~F 460 (507)
++.+++ +.|++--.+.++.++.+|++ =+..+|++
T Consensus 219 ~l~~~~~~~~~~~~~gi~~~~~~~~~l~~~g~~GiHl~t~n~~ 261 (272)
T TIGR00676 219 RLEKYDDDPEEVRAVGIEYATDQCEDLIAEGVPGIHFYTLNRA 261 (272)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCH
Confidence 344433 47888888999999999888 55667776
No 137
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=74.32 E-value=10 Score=38.54 Aligned_cols=127 Identities=15% Similarity=0.166 Sum_probs=78.4
Q ss_pred ccchhcccCchHHHHHHHHHh-cCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHH---hcCCCCCc
Q 010562 339 PFANIAHGNSSIVADKIALKL-VGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALK---MHGGGPQV 414 (507)
Q Consensus 339 PFANIAHG~nSviAtk~ALkL-ag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK---~HGG~~~~ 414 (507)
|+.+..-.+-..-.+++.-|. +|. ||+||-..|.++. .++|++ +||..|+..-.+.=|.-+..+| +.-.+
T Consensus 138 Pe~Hp~~~~~~~d~~~L~~Ki~aGA-~f~iTQ~~Fd~~~-~~~f~~-~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~--- 211 (281)
T TIGR00677 138 PEGHPEAESVELDLKYLKEKVDAGA-DFIITQLFYDVDN-FLKFVN-DCRAIGIDCPIVPGIMPINNYASFLRRAKW--- 211 (281)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC-CEeeccceecHHH-HHHHHH-HHHHcCCCCCEEeeccccCCHHHHHHHHhc---
Confidence 655443333222234555554 343 6999999999876 678888 7999998765444333333333 22222
Q ss_pred cCCCCCcccccc------cCHHH-HHHHHhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCC
Q 010562 415 VAGKPLDHAYLN------ENVAL-VEAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGA 480 (507)
Q Consensus 415 ~~g~pL~~~l~~------enl~a-l~~G~~NL~kHIeni~~fGvpvV--VAIN~F~tDT~~Ei~~v~~~~~~~g~ 480 (507)
+|-.+|+++.+ ++-++ -+.|++--.+.|+.+...|+|-| ..+|++ +.+.+.|+++|.
T Consensus 212 -~Gi~vP~~l~~~l~~~~~~~~~~~~~gi~~a~~~~~~l~~~G~~giH~~t~n~~--------~~~~~il~~l~~ 277 (281)
T TIGR00677 212 -SKTKIPQEIMSRLEPIKDDDEAVRDYGIELIVEMCQKLLASGIKGLHFYTLNLE--------KAALMILERLGL 277 (281)
T ss_pred -CCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHCCCCeeEEeccCch--------HHHHHHHHHcCC
Confidence 34455665543 33343 45799888899999999998843 556665 466677776664
No 138
>PRK00784 cobyric acid synthase; Provisional
Probab=73.96 E-value=2.1 Score=46.21 Aligned_cols=32 Identities=41% Similarity=0.545 Sum_probs=26.4
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
-|+||| |..|.||||+|.||+++| .+.|.++.
T Consensus 4 ~ifItG---T~T~vGKT~vt~~L~~~l-~~~G~~v~ 35 (488)
T PRK00784 4 ALMVQG---TASDAGKSTLVAGLCRIL-ARRGYRVA 35 (488)
T ss_pred eEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEe
Confidence 477776 568999999999999999 57787755
No 139
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=73.51 E-value=4.1 Score=44.15 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=28.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.++|+++| |-|.|||||+.-|+..| .+.|+++.+.
T Consensus 100 ~~vi~lvG----~~GvGKTTtaaKLA~~l-~~~G~kV~lV 134 (429)
T TIGR01425 100 QNVIMFVG----LQGSGKTTTCTKLAYYY-QRKGFKPCLV 134 (429)
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCCEEEE
Confidence 36788888 57999999999999999 4778876544
No 140
>PRK15453 phosphoribulokinase; Provisional
Probab=73.26 E-value=3.9 Score=42.42 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=26.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
+..+|.|||- .|.||||++-.|++.|+ +.+.+
T Consensus 4 k~piI~ItG~----SGsGKTTva~~l~~if~-~~~~~ 35 (290)
T PRK15453 4 KHPIIAVTGS----SGAGTTTVKRAFEKIFR-RENIN 35 (290)
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHHh-hcCCC
Confidence 4578999995 59999999999999994 66643
No 141
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=72.94 E-value=5 Score=37.85 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=28.8
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
-+.|++++|+| |.|.||||.+.-++.... ..|.+++
T Consensus 20 i~~g~i~~i~G----~~GsGKT~l~~~la~~~~-~~~~~v~ 55 (225)
T PRK09361 20 FERGTITQIYG----PPGSGKTNICLQLAVEAA-KNGKKVI 55 (225)
T ss_pred CCCCeEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEE
Confidence 36799999999 789999999999987773 4455544
No 142
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=72.06 E-value=3 Score=44.98 Aligned_cols=35 Identities=31% Similarity=0.284 Sum_probs=26.3
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.+|++++ |.|+|||||+.-|+..|..+.|+++.+.
T Consensus 100 ~vi~~vG----~~GsGKTTtaakLA~~l~~~~g~kV~lV 134 (428)
T TIGR00959 100 TVILMVG----LQGSGKTTTCGKLAYYLKKKQGKKVLLV 134 (428)
T ss_pred EEEEEEC----CCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 4566654 6799999999999999832568876644
No 143
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=72.00 E-value=5 Score=42.50 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=31.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSl 114 (507)
..+||||| |-|+|||||.-.|.+.++.......++++=+|.=
T Consensus 149 ~GlilI~G----~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 149 AGLGLICG----ETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHHHHHhcCCCceEEEEecCch
Confidence 44899998 4599999999999998853233456788877744
No 144
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=71.86 E-value=5.1 Score=40.00 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=29.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
+.+|+||| |-|+|||||...|.+.+. ..+ ..++.+=+|.
T Consensus 80 ~GlilisG----~tGSGKTT~l~all~~i~-~~~-~~iitiEdp~ 118 (264)
T cd01129 80 HGIILVTG----PTGSGKTTTLYSALSELN-TPE-KNIITVEDPV 118 (264)
T ss_pred CCEEEEEC----CCCCcHHHHHHHHHhhhC-CCC-CeEEEECCCc
Confidence 45899998 459999999999988884 433 3567776663
No 145
>PHA00729 NTP-binding motif containing protein
Probab=71.66 E-value=2.9 Score=41.76 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=19.8
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-|++|| || |.||||++..|++.|+
T Consensus 19 nIlItG---~p-GvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFG---KQ-GSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEC---CC-CCCHHHHHHHHHHHHH
Confidence 467777 34 9999999999999884
No 146
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=71.59 E-value=14 Score=41.16 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCCCHHHHHH----HHHHHHHc
Q 010562 438 NLARHIANTKAYGAN-VVVAVNMFATDSKAELNA----VRNAAMAA 478 (507)
Q Consensus 438 NL~kHIeni~~fGvp-vVVAIN~F~tDT~~Ei~~----v~~~~~~~ 478 (507)
....|+..++.+|+| +||++|+-..-++++++. ++++++..
T Consensus 90 qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~ 135 (581)
T TIGR00475 90 QTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSY 135 (581)
T ss_pred HHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 334677788889999 999999987655565543 44444443
No 147
>PF05729 NACHT: NACHT domain
Probab=71.45 E-value=3.8 Score=35.28 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=21.2
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++++|+| +.|.||||+..-+++.+.
T Consensus 1 r~l~I~G----~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISG----EPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEEC----CCCCChHHHHHHHHHHHH
Confidence 3677777 689999999999999994
No 148
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=71.24 E-value=6.9 Score=31.90 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.++.|+++| |.|.||||+..-+.+.+
T Consensus 17 ~~~~~v~i~G----~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 17 PPPKNLLLYG----PPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4678899988 67999999998888887
No 149
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=71.02 E-value=3.9 Score=32.96 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=16.4
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010562 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|.|.|||++.+.+...+.
T Consensus 8 ~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 8 PTGSGKTLAALLPILELL 25 (144)
T ss_pred CCCCchhHHHHHHHHHHH
Confidence 679999999999999884
No 150
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=70.86 E-value=4.3 Score=37.92 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=22.0
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
+|.|+| +-|.||||++--|.+.|. ..|.+
T Consensus 1 ii~i~G----~sgsGKttla~~l~~~l~-~~~~~ 29 (179)
T cd02028 1 VVGIAG----PSGSGKTTFAKKLSNQLR-VNGIG 29 (179)
T ss_pred CEEEEC----CCCCCHHHHHHHHHHHHH-HcCCC
Confidence 366777 569999999999999984 43443
No 151
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=70.83 E-value=3.1 Score=38.50 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=13.5
Q ss_pred CCCCCcchhHhhHHHHH
Q 010562 81 PLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL 97 (507)
|-|.||||++--|...|
T Consensus 7 ~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 7 GSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 56999999997776554
No 152
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=70.82 E-value=7.7 Score=39.50 Aligned_cols=64 Identities=23% Similarity=0.262 Sum_probs=46.2
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCC------CHHHHHHHHHHHHHcCCCeEEEcccccccCcCcccCCCCCCC
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATD------SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSDLPPLDL 505 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tD------T~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~~~~~~~ 505 (507)
++++=++++++.|..||+.=|-+..+ .++-.+.+.+....-.++ +++| ..||.|+...||-||.
T Consensus 19 ~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~-aI~~---~rGG~g~~rlL~~lD~ 88 (308)
T cd07062 19 RLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIK-AIIP---TIGGDDSNELLPYLDY 88 (308)
T ss_pred HHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCC-EEEE---CCcccCHhhhhhhcCH
Confidence 34444556677899999988864443 345556677776667775 7766 6899999999999985
No 153
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=70.79 E-value=5.5 Score=36.52 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=26.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
..|++|+++|.+ |.||||++-.|...|. .-|..
T Consensus 16 ~~~~~i~i~G~~----GsGKstla~~l~~~l~-~~~~~ 48 (184)
T TIGR00455 16 HRGVVIWLTGLS----GSGKSTIANALEKKLE-SKGYR 48 (184)
T ss_pred CCCeEEEEECCC----CCCHHHHHHHHHHHHH-HcCCc
Confidence 568999999975 9999999999999883 44543
No 154
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=70.63 E-value=5.6 Score=40.06 Aligned_cols=44 Identities=25% Similarity=0.139 Sum_probs=31.4
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~F 118 (507)
|.++|.+ ..-|.||||++..|+++| ++.|+++.+.=-.|+ .|+|
T Consensus 3 ~i~~i~~---~KGGvGKSt~a~~la~~l-~~~g~~vl~iD~D~~-n~~~ 46 (241)
T PRK13886 3 KIHMVLQ---GKGGVGKSFIAATIAQYK-ASKGQKPLCIDTDPV-NATF 46 (241)
T ss_pred eEEEEec---CCCCCcHHHHHHHHHHHH-HhCCCCEEEEECCCC-Cchh
Confidence 3444443 578999999999999999 588998654435555 3443
No 155
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=70.57 E-value=13 Score=38.84 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=45.6
Q ss_pred cccccccccccCCC-CcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEE-E
Q 010562 378 AEKFMNIKCRYSGL-TPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVV-V 455 (507)
Q Consensus 378 aEKF~dIKCR~sgl-~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvV-V 455 (507)
-|+|. ++-.+|+ ..|++++|.-++- |. ...-.+|+..++.+|+|.+ |
T Consensus 85 h~~f~--~~~~~~~~~~D~~ilVvda~~-----g~------------------------~~qt~e~l~~~~~~gi~~iIv 133 (394)
T TIGR00485 85 HADYV--KNMITGAAQMDGAILVVSATD-----GP------------------------MPQTREHILLARQVGVPYIVV 133 (394)
T ss_pred hHHHH--HHHHHHHhhCCEEEEEEECCC-----CC------------------------cHHHHHHHHHHHHcCCCEEEE
Confidence 35665 4445555 4889888875541 11 0144589999999999976 6
Q ss_pred EecCCCCCCHHHH-----HHHHHHHHHcC
Q 010562 456 AVNMFATDSKAEL-----NAVRNAAMAAG 479 (507)
Q Consensus 456 AIN~F~tDT~~Ei-----~~v~~~~~~~g 479 (507)
++|+..--+++|. +.+++++++.+
T Consensus 134 vvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 134 FLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred EEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 8999865433332 24666777666
No 156
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=70.36 E-value=3.1 Score=46.84 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=27.7
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lR 110 (507)
-|+|| +|..|.|||++|.||.++| .+.|.++ ...|
T Consensus 4 ~l~I~---~T~t~~GKT~vslgL~~~L-~~~G~~V-g~fK 38 (684)
T PRK05632 4 SIYLA---PTGTGVGLTSVSLGLMRAL-ERKGVKV-GFFK 38 (684)
T ss_pred EEEEE---ECCCCCCHHHHHHHHHHHH-HhCCCeE-EEeC
Confidence 35555 6788999999999999999 5778874 4456
No 157
>PRK07667 uridine kinase; Provisional
Probab=70.31 E-value=5.8 Score=37.24 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=23.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
..+|.++| +-|.||||++--|.+.|+ ..|.+
T Consensus 17 ~~iIgI~G----~~gsGKStla~~L~~~l~-~~~~~ 47 (193)
T PRK07667 17 RFILGIDG----LSRSGKTTFVANLKENMK-QEGIP 47 (193)
T ss_pred CEEEEEEC----CCCCCHHHHHHHHHHHHH-hCCCc
Confidence 35667776 469999999999999995 54443
No 158
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=70.16 E-value=3.9 Score=37.35 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|++|+++|. .|.||||.+--|.+.+.
T Consensus 2 ~~~i~l~G~----~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGG----SSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECC----CCCCHHHHHHHHHHhhC
Confidence 789999984 69999999999988763
No 159
>PLN02348 phosphoribulokinase
Probab=70.03 E-value=6 Score=42.68 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=20.8
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-+|-|+| +.|.||||++-.|++.|+
T Consensus 50 ~IIGIaG----~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 50 VVIGLAA----DSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 3556776 579999999999999995
No 160
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=69.66 E-value=5.9 Score=39.29 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=31.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
.+|..|..|+. .|.||||.+-.|.+.| ...|+.+.+
T Consensus 21 ~~~~viW~TGL----SGsGKSTiA~ale~~L-~~~G~~~y~ 56 (197)
T COG0529 21 QKGAVIWFTGL----SGSGKSTIANALEEKL-FAKGYHVYL 56 (197)
T ss_pred CCCeEEEeecC----CCCCHHHHHHHHHHHH-HHcCCeEEE
Confidence 56889999997 5999999999999999 588988765
No 161
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=69.59 E-value=3.3 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.9
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|+||| |-.|.||||+|.||.++|.
T Consensus 241 i~Iag---t~Tg~GKT~vt~~L~~al~ 264 (476)
T PRK06278 241 IILLA---TGSESGKTFLTTSIAGKLR 264 (476)
T ss_pred EEEEe---CCCCCCHHHHHHHHHHHHH
Confidence 77776 5689999999999999995
No 162
>PF13245 AAA_19: Part of AAA domain
Probab=69.49 E-value=4.4 Score=33.47 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=22.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.++.+|+| |.|.|||||.+-+...+-
T Consensus 9 ~~~~~vv~g----~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQG----PPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 356777776 899999999999988883
No 163
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.43 E-value=3.9 Score=39.12 Aligned_cols=30 Identities=40% Similarity=0.548 Sum_probs=21.1
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
+|++-| |-|.|||||..=|+.-+. ..|++.
T Consensus 3 vi~lvG----ptGvGKTTt~aKLAa~~~-~~~~~v 32 (196)
T PF00448_consen 3 VIALVG----PTGVGKTTTIAKLAARLK-LKGKKV 32 (196)
T ss_dssp EEEEEE----STTSSHHHHHHHHHHHHH-HTT--E
T ss_pred EEEEEC----CCCCchHhHHHHHHHHHh-hccccc
Confidence 444444 669999999999999995 446554
No 164
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=69.37 E-value=6.7 Score=37.00 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=26.0
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
=+.|.+++|++ |.|.||||++.-++-... .-|+++
T Consensus 17 i~~G~~~~i~G----~~G~GKT~l~~~~~~~~~-~~g~~~ 51 (229)
T TIGR03881 17 IPRGFFVAVTG----EPGTGKTIFCLHFAYKGL-RDGDPV 51 (229)
T ss_pred CcCCeEEEEEC----CCCCChHHHHHHHHHHHH-hcCCeE
Confidence 36799999999 779999999987664331 336554
No 165
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=68.83 E-value=5.3 Score=39.37 Aligned_cols=46 Identities=35% Similarity=0.468 Sum_probs=39.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FG 119 (507)
.|++|++|| |.|.||||+.--|-+.. .+......+=|+|=-|=+=|
T Consensus 3 ~G~l~vlsg----PSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G 48 (191)
T COG0194 3 KGLLIVLSG----PSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDG 48 (191)
T ss_pred CceEEEEEC----CCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCC
Confidence 699999998 89999999999998888 57888889999998885544
No 166
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=68.78 E-value=7.8 Score=43.11 Aligned_cols=94 Identities=27% Similarity=0.380 Sum_probs=55.3
Q ss_pred cccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEE
Q 010562 376 IGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 455 (507)
Q Consensus 376 lGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVV 455 (507)
-|=|=|.+.-.|-+.+.+ .||||.-+ .+|=.| .-+|| |+.+|.+|+|.||
T Consensus 63 PGHeAFt~mRaRGa~vtD-IaILVVa~----dDGv~p--------------QTiEA-----------I~hak~a~vP~iV 112 (509)
T COG0532 63 PGHEAFTAMRARGASVTD-IAILVVAA----DDGVMP--------------QTIEA-----------INHAKAAGVPIVV 112 (509)
T ss_pred CcHHHHHHHHhcCCcccc-EEEEEEEc----cCCcch--------------hHHHH-----------HHHHHHCCCCEEE
Confidence 366778877778776664 55555422 222222 12333 7778999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHcCCC------eEEEcccccccCcCcccCC
Q 010562 456 AVNMFATDSKAELNAVRNAAMAAGAF------DAVVCSHHAHGGKGAVSDL 500 (507)
Q Consensus 456 AIN~F~tDT~~Ei~~v~~~~~~~g~~------~~~~~~~wa~GG~Ga~~~~ 500 (507)
|+|+-.-- ++..+.++....+.|.. ++.+-..=|+.|+|--++|
T Consensus 113 AiNKiDk~-~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL 162 (509)
T COG0532 113 AINKIDKP-EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELL 162 (509)
T ss_pred EEecccCC-CCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHH
Confidence 99985432 33344555555555552 2444455577787755544
No 167
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=67.84 E-value=8.8 Score=39.40 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=40.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecC-----C-CCCCHHHHHHHHHHH--HHcCCCeEEEcccccccCcCcccCCCCCCC
Q 010562 438 NLARHIANTKAYGANVVVAVNM-----F-ATDSKAELNAVRNAA--MAAGAFDAVVCSHHAHGGKGAVSDLPPLDL 505 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~-----F-~tDT~~Ei~~v~~~~--~~~g~~~~~~~~~wa~GG~Ga~~~~~~~~~ 505 (507)
++++=|+.++++|..|++-=|. | ..+.++-.+-+.+.. .+- ++ +++| ..||.|+...||-||.
T Consensus 18 ~~~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~-aI~~---~rGGyg~~rlLp~Ld~ 88 (305)
T PRK11253 18 AALRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTP-NT-IVLA---VRGGYGASRLLAGIDW 88 (305)
T ss_pred HHHHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCC-cc-EEEE---ecccCCHhHhhhhCCH
Confidence 3444456667789988887663 2 333444455555543 333 54 6655 6899999999999985
No 168
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=67.69 E-value=4.2 Score=36.75 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=17.6
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.+|.| |.|.|||||...+...+
T Consensus 19 ~~~i~G----pPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQG----PPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-----STTSSHHHHHHHHHHHH
T ss_pred CEEEEC----CCCCChHHHHHHHHHHh
Confidence 566655 56999999999998888
No 169
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=67.66 E-value=4.5 Score=33.57 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.2
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|+|+|+ .|.||||++--|.+-+
T Consensus 1 I~i~G~----~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGI----PGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEES----TTSSHHHHHHHHHHHH
T ss_pred CEEECC----CCCCHHHHHHHHHHHH
Confidence 566665 5999999988887765
No 170
>COG2229 Predicted GTPase [General function prediction only]
Probab=67.50 E-value=3.9 Score=40.22 Aligned_cols=49 Identities=24% Similarity=0.288 Sum_probs=31.4
Q ss_pred CcEEEEecC---CCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcCcccCCCCC
Q 010562 451 ANVVVAVNM---FATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSDLPPL 503 (507)
Q Consensus 451 vpvVVAIN~---F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~~~~~ 503 (507)
+|+|||+|+ |...+++++..+.+.+. +..+ ++. .=+.=++|+.++|--|
T Consensus 122 ip~vVa~NK~DL~~a~ppe~i~e~l~~~~-~~~~-vi~--~~a~e~~~~~~~L~~l 173 (187)
T COG2229 122 IPVVVAINKQDLFDALPPEKIREALKLEL-LSVP-VIE--IDATEGEGARDQLDVL 173 (187)
T ss_pred CCEEEEeeccccCCCCCHHHHHHHHHhcc-CCCc-eee--eecccchhHHHHHHHH
Confidence 999999998 45667788877777664 4555 322 2233456666665433
No 171
>PRK00098 GTPase RsgA; Reviewed
Probab=67.04 E-value=40 Score=34.14 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCC-CCHHHHHHHHHHHHHcCCC
Q 010562 439 LARHIANTKAYGANVVVAVNMFAT-DSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 439 L~kHIeni~~fGvpvVVAIN~F~t-DT~~Ei~~v~~~~~~~g~~ 481 (507)
+.+-+..++..++|+|+++|+-.- +..++++...+..++.|..
T Consensus 100 idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~ 143 (298)
T PRK00098 100 LDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYD 143 (298)
T ss_pred HHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCe
Confidence 456666677789999999999765 3455566666677777875
No 172
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.04 E-value=7.7 Score=41.33 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=24.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk 103 (507)
++|+.|++.| |-|.|||||..-|+..+..+.|.
T Consensus 135 ~~g~ii~lvG----ptGvGKTTtiakLA~~~~~~~G~ 167 (374)
T PRK14722 135 ERGGVFALMG----PTGVGKTTTTAKLAARCVMRFGA 167 (374)
T ss_pred cCCcEEEEEC----CCCCCHHHHHHHHHHHHHHhcCC
Confidence 4578888877 56999999999999876334454
No 173
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=66.99 E-value=3.7 Score=38.23 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=22.0
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
|-|+| |.|.||||++--|++.|+ ..|..
T Consensus 2 IgI~G----~sgSGKTTla~~L~~~L~-~~~~~ 29 (194)
T PF00485_consen 2 IGIAG----PSGSGKTTLAKRLAQILN-KRGIP 29 (194)
T ss_dssp EEEEE----STTSSHHHHHHHHHHHHT-TCTTT
T ss_pred EEEEC----CCCCCHHHHHHHHHHHhC-ccCcC
Confidence 55555 579999999999999994 55555
No 174
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=66.97 E-value=29 Score=34.79 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=26.2
Q ss_pred hhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC-CCeEEE
Q 010562 447 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAG-AFDAVV 485 (507)
Q Consensus 447 ~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g-~~~~~~ 485 (507)
+++++|++|-|+-+ +.+++....+.++++| +..+.+
T Consensus 88 ~~~~~p~i~si~g~---~~~~~~~~a~~~~~aG~~D~iEl 124 (301)
T PRK07259 88 EEFDTPIIANVAGS---TEEEYAEVAEKLSKAPNVDAIEL 124 (301)
T ss_pred hccCCcEEEEeccC---CHHHHHHHHHHHhccCCcCEEEE
Confidence 35789999888754 4678888888888898 753334
No 175
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=66.79 E-value=3.3 Score=34.71 Aligned_cols=22 Identities=41% Similarity=0.747 Sum_probs=17.7
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|+|+| |.|.||||++-=|++.+
T Consensus 2 I~I~G----~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISG----PPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEE----STTSSHHHHHHHHHHHH
T ss_pred EEEEC----CCCCCHHHHHHHHHHHH
Confidence 56666 56999999998888776
No 176
>PRK13764 ATPase; Provisional
Probab=66.60 E-value=6.8 Score=44.20 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=29.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
..+.||||| |.|.||||+...|++.++ .-++ .+.++-+|
T Consensus 256 ~~~~ILIsG----~TGSGKTTll~AL~~~i~-~~~r-iV~TiEDp 294 (602)
T PRK13764 256 RAEGILIAG----APGAGKSTFAQALAEFYA-DMGK-IVKTMESP 294 (602)
T ss_pred cCCEEEEEC----CCCCCHHHHHHHHHHHHh-hCCC-EEEEECCC
Confidence 356799998 459999999999999995 4443 34466544
No 177
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=66.59 E-value=11 Score=37.99 Aligned_cols=64 Identities=33% Similarity=0.429 Sum_probs=46.6
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCC------CCCHHHHHHHHHHHHHcCCCeEEEcccccccCcCcccCCCCCCC
Q 010562 438 NLARHIANTKAYGANVVVAVNMFA------TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSDLPPLDL 505 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~------tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~~~~~~~ 505 (507)
++++=++.+++.|+.|++.=|-|. ...++-.+.+.+....-.++ +++| ..||.|+...||-+|.
T Consensus 15 ~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~-aI~~---~rGG~ga~rlL~~ld~ 84 (282)
T cd07025 15 RLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIK-AIWC---ARGGYGANRLLPYLDY 84 (282)
T ss_pred HHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCC-EEEE---cCCcCCHHHhhhhCCH
Confidence 444555666677999999887553 34455566777777777776 6655 6899999999999885
No 178
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=66.50 E-value=7.2 Score=36.26 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=29.4
Q ss_pred hhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 58 SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 58 ~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
+.+++......++.|+++| |.|.||||++..++..+. ..+.+
T Consensus 27 ~~l~~~~~~~~~~~lll~G----~~G~GKT~la~~~~~~~~-~~~~~ 68 (226)
T TIGR03420 27 AALRQLAAGKGDRFLYLWG----ESGSGKSHLLQAACAAAE-ERGKS 68 (226)
T ss_pred HHHHHHHhcCCCCeEEEEC----CCCCCHHHHHHHHHHHHH-hcCCc
Confidence 3444432234577899999 669999999999998874 44544
No 179
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=66.40 E-value=14 Score=35.08 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=33.7
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHcCC
Q 010562 438 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGA 480 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~--tDT~~Ei~~v~~~~~~~g~ 480 (507)
...+-|+.++++|+++.|....++ .|+++|++.+.+++++.|.
T Consensus 144 ~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~ 188 (235)
T TIGR02493 144 PTLDFAKYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPN 188 (235)
T ss_pred HHHHHHHHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCC
Confidence 344556667788999876666565 6899999999999999994
No 180
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.26 E-value=7 Score=42.61 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=27.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.+++|++++ |.|.|||||+.-|+..+....|+++.+.
T Consensus 222 ~~~vi~lvG----ptGvGKTTtaaKLA~~~~~~~G~~V~Li 258 (432)
T PRK12724 222 QRKVVFFVG----PTGSGKTTSIAKLAAKYFLHMGKSVSLY 258 (432)
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHHHHhcCCeEEEe
Confidence 356788887 6799999999999976533457665443
No 181
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=66.19 E-value=7.2 Score=37.90 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=30.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
.++.|+|+|- -|+||||+.--|.+.+. .. ...++++=+|
T Consensus 126 ~~~~ili~G~----tGSGKTT~l~all~~i~-~~-~~~iv~iEd~ 164 (270)
T PF00437_consen 126 GRGNILISGP----TGSGKTTLLNALLEEIP-PE-DERIVTIEDP 164 (270)
T ss_dssp TTEEEEEEES----TTSSHHHHHHHHHHHCH-TT-TSEEEEEESS
T ss_pred cceEEEEECC----CccccchHHHHHhhhcc-cc-ccceEEeccc
Confidence 4789999995 49999999999988885 33 4567776653
No 182
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=65.77 E-value=3.1 Score=41.79 Aligned_cols=18 Identities=50% Similarity=0.713 Sum_probs=17.1
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010562 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|+|.||||++-.|++.|+
T Consensus 12 PagsGKsTvak~lA~~Lg 29 (222)
T COG0283 12 PAGSGKSTVAKILAEKLG 29 (222)
T ss_pred CCccChHHHHHHHHHHhC
Confidence 899999999999999995
No 183
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=65.67 E-value=7.8 Score=41.52 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=21.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|++|++.+ | -|.|||||+.-|+-.+
T Consensus 220 ~~~~i~~vG--p--tGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 220 QGGVVALVG--P--TGVGKTTTLAKLAARY 245 (424)
T ss_pred CCcEEEEEC--C--CCCCHHHHHHHHHHHH
Confidence 367777774 4 4999999999999888
No 184
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=65.52 E-value=9.8 Score=38.35 Aligned_cols=41 Identities=29% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
..++.|.|++ |-|.||||+..-|+..+. ..|.++.+.-=.|
T Consensus 32 ~~~~~i~i~G----~~G~GKttl~~~l~~~~~-~~~~~v~~i~~D~ 72 (300)
T TIGR00750 32 GNAHRVGITG----TPGAGKSTLLEALGMELR-RRGLKVAVIAVDP 72 (300)
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEEEEecCC
Confidence 4688898886 579999999999999994 7788876544444
No 185
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=65.16 E-value=9.4 Score=36.42 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=31.2
Q ss_pred CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE-EEEecCC
Q 010562 65 GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQP 112 (507)
Q Consensus 65 ~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a-~~~lReP 112 (507)
.-|.|.+++|+| |.|.||||.+..++.... +.|.++ ++.+.++
T Consensus 21 G~~~g~~~~i~G----~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~~ 64 (234)
T PRK06067 21 GIPFPSLILIEG----DHGTGKSVLSQQFVYGAL-KQGKKVYVITTENT 64 (234)
T ss_pred CCcCCcEEEEEC----CCCCChHHHHHHHHHHHH-hCCCEEEEEEcCCC
Confidence 347899999998 679999999999865542 346665 4445444
No 186
>PRK06762 hypothetical protein; Provisional
Probab=65.02 E-value=5.2 Score=35.76 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=20.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++|++||. .|.||||.+--|.+.+
T Consensus 2 ~~li~i~G~----~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGN----SGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 368888885 5999999998887777
No 187
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=64.97 E-value=93 Score=27.48 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=60.6
Q ss_pred chHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCccccccc
Q 010562 348 SSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNE 427 (507)
Q Consensus 348 nSviAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~e 427 (507)
...+...++.+..+ .++-|.-.|++-+.=.+---.++......+||.|+|-. |......+.+ ...
T Consensus 18 ~~~~~~~l~~~~~~-~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~---------G~ND~~~~~~-----~~~ 82 (191)
T cd01834 18 VGYVETYLAARYPE-LKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMF---------GINDSFRGFD-----DPV 82 (191)
T ss_pred HHHHHHHHHHhCCC-CCcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEe---------ecchHhhccc-----ccc
Confidence 45566666666531 25677777777654332111344445557799888755 3222111100 123
Q ss_pred CHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCC-----------HHH----HHHHHHHHHHcCCC
Q 010562 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDS-----------KAE----LNAVRNAAMAAGAF 481 (507)
Q Consensus 428 nl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT-----------~~E----i~~v~~~~~~~g~~ 481 (507)
+++..+..+..+.+.+.. +.-+.++|+ ++-++.+. .+. .+.+++.|++.++.
T Consensus 83 ~~~~~~~~l~~~v~~~~~-~~~~~~ii~-~~p~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~ 149 (191)
T cd01834 83 GLEKFKTNLRRLIDRLKN-KESAPRIVL-VSPIAYEANEDPLPDGAEYNANLAAYADAVRELAAENGVA 149 (191)
T ss_pred cHHHHHHHHHHHHHHHHc-ccCCCcEEE-ECCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 566666666666544431 234555554 56544322 122 24567788888875
No 188
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=64.84 E-value=11 Score=38.35 Aligned_cols=55 Identities=24% Similarity=0.215 Sum_probs=41.2
Q ss_pred HHhhHHHHHHHHhhcCC-cEEEEecCCCCCCHHHHHHHHHHHHHcC-CCeEEEcccccccCcC
Q 010562 435 GCVNLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAAMAAG-AFDAVVCSHHAHGGKG 495 (507)
Q Consensus 435 G~~NL~kHIeni~~fGv-pvVVAIN~F~tDT~~Ei~~v~~~~~~~g-~~~~~~~~~wa~GG~G 495 (507)
|..=|.+||+|+.+-|+ .+||+.|.|-.| ++.++..+.. ...++.++.+.+|.-|
T Consensus 30 gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~------lve~~l~~~~~~~~iv~N~~y~ktN~~ 86 (239)
T COG1213 30 GREIIYRTIENLAKAGITEFVVVTNGYRAD------LVEEFLKKYPFNAKIVINSDYEKTNTG 86 (239)
T ss_pred CeEeHHHHHHHHHHcCCceEEEEeccchHH------HHHHHHhcCCcceEEEeCCCcccCCce
Confidence 44468899999999998 677788899876 6667766655 3347788888888744
No 189
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=64.83 E-value=22 Score=34.04 Aligned_cols=54 Identities=19% Similarity=0.062 Sum_probs=44.6
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecCCCC--CCHHHHHHHHHHHHHcCCCeEEEccc
Q 010562 435 GCVNLARHIANTKAYGANVVVAVNMFAT--DSKAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 435 G~~NL~kHIeni~~fGvpvVVAIN~F~t--DT~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
-+.+....|+.+++.|+++.+.+=.... .+++++..+.+.+.+.|+..+.+++.
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt 168 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT 168 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh
Confidence 4667888899999999999999944444 78999999999999999987777765
No 190
>PRK13974 thymidylate kinase; Provisional
Probab=64.76 E-value=9.8 Score=36.23 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=34.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCC----cEEEEecCCCCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK----KVVTCLRQPSQGP 116 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk----~a~~~lRePSlGP 116 (507)
.|++|.+-|+ -|.||||.+--|.+-|. .-|+ ..++..|+|.-.|
T Consensus 2 ~g~~i~~eG~----dGsGKsT~~~~l~~~l~-~~g~~~~~~~~~~~~~p~~~~ 49 (212)
T PRK13974 2 KGKFIVLEGI----DGCGKTTQIDHLSKWLP-SSGLMPKGAKLIITREPGGTL 49 (212)
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHHH-hcCccccCCeeeeeeCCCCCc
Confidence 3889999986 59999999999999994 4454 3677788987433
No 191
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=64.29 E-value=5.4 Score=35.25 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=29.6
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecC-CCCCCccccccC
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ-PSQGPTFGIKGG 123 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lRe-PSlGP~FGiKGG 123 (507)
+-|.||||++.-|++.| .+.|++..+.=-. ||+-.-|+.+.+
T Consensus 7 kgG~GKTt~a~~la~~l-~~~g~~V~~id~D~~~~~~~~~~~~~ 49 (116)
T cd02034 7 KGGVGKTTIAALLARYL-AEKGKPVLAIDADPDDLPERLSVEVG 49 (116)
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCcEEEEECCchhhHHHHhhccC
Confidence 57999999999999999 5778886544334 444444555443
No 192
>PRK13946 shikimate kinase; Provisional
Probab=64.28 E-value=4.7 Score=37.42 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=22.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+.|+|+|+ .|.||||++.-|++.|+
T Consensus 10 ~~~I~l~G~----~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGL----MGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECC----CCCCHHHHHHHHHHHcC
Confidence 468999998 49999999999988874
No 193
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=64.24 E-value=5.4 Score=36.70 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=34.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlG 115 (507)
+|.|+++| |.|.||||+.--|.+.+..+++.-..-+-|.|-.|
T Consensus 2 ~r~ivl~G----psg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~ 44 (183)
T PF00625_consen 2 RRPIVLVG----PSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPG 44 (183)
T ss_dssp SSEEEEES----STTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTT
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHHhcccccccceeecccCCccc
Confidence 57777766 78999999999999998656777777788998665
No 194
>PRK13975 thymidylate kinase; Provisional
Probab=64.02 E-value=5.6 Score=36.35 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|++|++.|+ -|.||||.+--|++.|+
T Consensus 2 ~~~I~ieG~----~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGI----DGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 578999985 69999999999999884
No 195
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=63.94 E-value=20 Score=31.79 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCC
Q 010562 437 VNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAF 481 (507)
Q Consensus 437 ~NL~kHIeni~~---fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~ 481 (507)
.++.+.++++++ .++|+||+.|+.....+.. .+.+++++.+.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01866 93 NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLI 142 (168)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCE
Confidence 355556666655 4899999999966542222 23456777777875
No 196
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=63.84 E-value=16 Score=36.57 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=41.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccc
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 492 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~G 492 (507)
....|++.+-+.|+|+|+.-=- =|++|.+.+.+.|++.|+. +.++-.|+-|
T Consensus 80 ~~~~~~~~al~~g~~vVigttg---~~~e~~~~l~~aA~~~g~~-v~~a~NfSlG 130 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVGTTG---FSEEDKQELADLAEKAGIA-AVIAPNFSIG 130 (266)
T ss_pred HHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHHHhcCCcc-EEEECcccHH
Confidence 4456788888899999996533 3789999999999999997 8888888766
No 197
>PRK14738 gmk guanylate kinase; Provisional
Probab=63.79 E-value=7.7 Score=36.85 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=20.6
Q ss_pred CCCCCcEEEEeecCCCCCCCCcchhHhhHH
Q 010562 65 GSADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (507)
Q Consensus 65 ~~~~GKlIlVTaitPTP~GEGKTTttIGL~ 94 (507)
+.+.+++|+++| |.|.||||+.--|.
T Consensus 9 ~~~~~~~ivi~G----psG~GK~tl~~~L~ 34 (206)
T PRK14738 9 KPAKPLLVVISG----PSGVGKDAVLARMR 34 (206)
T ss_pred CCCCCeEEEEEC----cCCCCHHHHHHHHH
Confidence 446799999998 67999999765553
No 198
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=63.76 E-value=28 Score=33.29 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCc
Q 010562 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 450 GvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~ 494 (507)
|+|+.|.+..=.- +++|+....+.|.++|+..+-.++.|..+|.
T Consensus 116 g~~lkvI~e~~~l-~~~~i~~a~ria~e~GaD~IKTsTG~~~~~a 159 (203)
T cd00959 116 GAPLKVILETGLL-TDEEIIKACEIAIEAGADFIKTSTGFGPGGA 159 (203)
T ss_pred CCeEEEEEecCCC-CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC
Confidence 8998887665333 5889999999999999975555677975553
No 199
>PRK06761 hypothetical protein; Provisional
Probab=63.70 E-value=7.2 Score=40.03 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=30.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSl 114 (507)
+++|+|+|. .|.||||++--|++-|. ..|.++.. .++|..
T Consensus 3 ~~lIvI~G~----~GsGKTTla~~L~~~L~-~~g~~v~~-~~~~~~ 42 (282)
T PRK06761 3 TKLIIIEGL----PGFGKSTTAKMLNDILS-QNGIEVEL-YLEGNL 42 (282)
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHhcC-cCceEEEE-EecCCC
Confidence 579999996 49999999999999994 66776544 555443
No 200
>PRK14527 adenylate kinase; Provisional
Probab=62.85 E-value=6.4 Score=36.46 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=23.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+++|+|.| |-|.||||.+.-|++-++
T Consensus 4 ~~~~~i~i~G----~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLG----PPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 4689999998 579999999999988774
No 201
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.63 E-value=8.7 Score=40.23 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=27.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.+.|-|||.+ ||||||-=|++.| ...|+++.
T Consensus 109 ~~~~I~ITGT~------GKTTTt~li~~iL-~~~g~~~~ 140 (445)
T PRK04308 109 GDKVIAITGSN------GKTTVTSLVGYLC-IKCGLDTV 140 (445)
T ss_pred CCCEEEEECCC------cHHHHHHHHHHHH-HHcCCCeE
Confidence 46899999986 9999999999999 57888753
No 202
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=62.11 E-value=9.2 Score=42.75 Aligned_cols=47 Identities=32% Similarity=0.533 Sum_probs=34.4
Q ss_pred hhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 58 SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 58 ~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
.+.+||.++..| |||.+ |-|.||||.+.+|+.=+ +..|| .+=++-.|
T Consensus 254 kl~eRL~eraeG--ILIAG----~PGaGKsTFaqAlAefy-~~~Gk-iVKTmEsP 300 (604)
T COG1855 254 KLKERLEERAEG--ILIAG----APGAGKSTFAQALAEFY-ASQGK-IVKTMESP 300 (604)
T ss_pred HHHHHHHhhhcc--eEEec----CCCCChhHHHHHHHHHH-HhcCc-EEeeccCc
Confidence 456677765555 77766 67999999999999999 58898 34444433
No 203
>PRK06547 hypothetical protein; Provisional
Probab=61.91 E-value=5.8 Score=37.25 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
-.+|+|+| |.|.||||++--|++.+
T Consensus 15 ~~~i~i~G----~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDG----RSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 45788877 67999999998888775
No 204
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.67 E-value=9 Score=40.28 Aligned_cols=31 Identities=26% Similarity=0.103 Sum_probs=27.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
.|.|-|||.+ ||||||-=|++.| ...|+++.
T Consensus 108 ~~~I~VTGTn------GKTTTt~ll~~iL-~~~g~~~~ 138 (438)
T PRK04663 108 KPVIAITGSN------GKSTVTDLTGVMA-KAAGVKVA 138 (438)
T ss_pred CCEEEEeCCC------CHHHHHHHHHHHH-HHCCCCEE
Confidence 5799999986 9999999999999 58898864
No 205
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=61.07 E-value=5.5 Score=39.92 Aligned_cols=112 Identities=19% Similarity=0.276 Sum_probs=67.6
Q ss_pred HHHHHHh-cCCCCeEEeecccccccccccccccccccCCCCcceEE---EEeeehHHHhcCCCCCccCCCCCcccccc--
Q 010562 353 DKIALKL-VGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV---IVATIRALKMHGGGPQVVAGKPLDHAYLN-- 426 (507)
Q Consensus 353 tk~ALkL-ag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavV---lVaTvRALK~HGG~~~~~~g~pL~~~l~~-- 426 (507)
.++.-|+ +|. ||+||-..|..+. .++|++ +||..|+.--.++ .+.+.+.+.+.-.. .|-.+|+++.+
T Consensus 163 ~~l~~Ki~aGA-~f~iTQ~~fd~~~-~~~~~~-~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~----~Gv~iP~~~~~~l 235 (287)
T PF02219_consen 163 KRLKKKIDAGA-DFIITQPFFDAEA-FERFLD-RLREAGIDVPIIPGIMPLTSAKSARFLAKL----CGVDIPDELIERL 235 (287)
T ss_dssp HHHHHHHHTTE-SEEEEEE-SSHHH-HHHHHH-HHHHTTHTSEEEEEEE-HCCHHHHHHHHHH----HT-EEEHHHHHHH
T ss_pred HHHHHHHHCCC-CEEeccccCCHHH-HHHHHH-HHHHcCCCCcEEEEEeccCCHHHHHHHHhc----cCccCCHHHHHHH
Confidence 3444555 232 8999999999987 888988 8999998322221 23344555444221 13334554433
Q ss_pred ----cCHHHH-HHHHhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcC
Q 010562 427 ----ENVALV-EAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAG 479 (507)
Q Consensus 427 ----enl~al-~~G~~NL~kHIeni~~fGvpvV--VAIN~F~tDT~~Ei~~v~~~~~~~g 479 (507)
.+.++. +.|++-....++.+...|++=| .++|++ +.+.+.++++|
T Consensus 236 ~~~~~~~~~~~~~gi~~a~e~~~~l~~~gv~GvH~~t~n~~--------~~~~~il~~lg 287 (287)
T PF02219_consen 236 EEAKDDPEAVREIGIEIAVELIRELLAEGVPGVHLYTMNRE--------ELVPEILENLG 287 (287)
T ss_dssp HTTTT-HHHHHHHHHHHHHHHHHHHHHTT-SEEEEEETTTS--------HHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHhHHHHHHHHHHHHHcCCCeEEEEcCCCH--------HHHHHHHHHcC
Confidence 334443 5688888888988888775543 467877 56667776665
No 206
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=61.04 E-value=43 Score=30.02 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=37.3
Q ss_pred hHHHHHHHHhhc---CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccc
Q 010562 438 NLARHIANTKAY---GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAH 491 (507)
Q Consensus 438 NL~kHIeni~~f---GvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~ 491 (507)
.+.+|++.+.+. ++|+++-.+-..+-+.+++..+.+.+++.|+.-+-.+..|..
T Consensus 98 ~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~ 154 (201)
T cd00945 98 EVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGG 154 (201)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC
Confidence 666777777664 899888777444446778887777778899974444444544
No 207
>PRK03839 putative kinase; Provisional
Probab=61.03 E-value=6.4 Score=35.86 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=19.3
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.|+++|+ -|.||||++.-|++.|+
T Consensus 2 ~I~l~G~----pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGT----PGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHhC
Confidence 4777776 39999999988888873
No 208
>PRK04040 adenylate kinase; Provisional
Probab=60.98 E-value=6.8 Score=37.16 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++|+|||+ .|.||||++--|++.|
T Consensus 2 ~~~i~v~G~----pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGV----PGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeC----CCCCHHHHHHHHHHHh
Confidence 368999997 4999999999998888
No 209
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.83 E-value=10 Score=40.58 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=27.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
.+.|-|||.+ ||||||-=|++.| ...|+++..
T Consensus 121 ~~~I~VTGTn------GKTTTt~ml~~iL-~~~g~~~~~ 152 (498)
T PRK02006 121 PKVLAITGTN------GKTTTTALTGLLC-ERAGKKVAV 152 (498)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HHcCCCEEE
Confidence 3799999986 9999999999999 588988664
No 210
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=60.47 E-value=8.2 Score=39.94 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.7
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
|.||| +.|.||||++-.|.+.|. ..|.+
T Consensus 2 IgItG----~SGSGKTTv~~~l~~~l~-~~g~~ 29 (277)
T cd02029 2 IAVTG----SSGAGTTTVKRAFEHIFA-REGIH 29 (277)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHHH-hcCCc
Confidence 56666 579999999999999994 66754
No 211
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=60.37 E-value=29 Score=29.87 Aligned_cols=41 Identities=10% Similarity=-0.129 Sum_probs=27.5
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccccc
Q 010562 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~~wa 490 (507)
.++|+||+.|+..-..+.+ .+...+++++.+.+ +..++...
T Consensus 105 ~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~ 147 (162)
T cd04106 105 GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVKD 147 (162)
T ss_pred CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCC
Confidence 4899999999986543333 34556777888886 55555443
No 212
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=60.30 E-value=13 Score=35.04 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=29.0
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE-EEEecC
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQ 111 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a-~~~lRe 111 (507)
-|.|.+++|+| |.|.|||+.+..++-.. .+.|+++ .+++.+
T Consensus 13 i~~g~~~li~G----~~G~GKt~~~~~~~~~~-~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 13 FPEGHVIVVIG----EYGTGKTTFSLQFLYQG-LKNGEKAMYISLEE 54 (224)
T ss_pred CCCCeEEEEEC----CCCCCHHHHHHHHHHHH-HhCCCeEEEEECCC
Confidence 36799999999 57999999988886543 1336665 444444
No 213
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]
Probab=59.88 E-value=11 Score=37.23 Aligned_cols=153 Identities=21% Similarity=0.291 Sum_probs=91.7
Q ss_pred CHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCc--ccceeecCceeEEcccccchhcccCchHHHHHHH
Q 010562 279 SLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINP--TLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIA 356 (507)
Q Consensus 279 dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikP--NLvQTlEgtPa~VHgGPFANIAHG~nSviAtk~A 356 (507)
++.+|| .|.+|. .+|+-+|++|.-- .=|.+.++- -|=+.|+|.+ +.|+||--+-
T Consensus 12 ~i~~Lk--vGd~v~---lsG~I~t~RD~AH-----~ri~e~~~~ge~lP~dl~g~~-Iy~aGP~~~~------------- 67 (184)
T COG1838 12 EIAKLK--VGDVVY---LSGKIVTGRDAAH-----KRLLEMLDRGEELPVDLKGHI-IYYAGPVKTK------------- 67 (184)
T ss_pred HHHhcc--CCCEEE---EeeEEEEehhHHH-----HHHHHHHhcCCCCCccCCCCE-EEEeccccCC-------------
Confidence 344454 677664 6899999999532 334444420 1116677764 6799998543
Q ss_pred HHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEe-------eehHHHhcCCCCCccCCCC---Cccccc-
Q 010562 357 LKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVA-------TIRALKMHGGGPQVVAGKP---LDHAYL- 425 (507)
Q Consensus 357 LkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVa-------TvRALK~HGG~~~~~~g~p---L~~~l~- 425 (507)
++|+|--+|-=+..=+++|.+.=--..|+ -++|. |++|+|=||++....+|-. +.+.++
T Consensus 68 ------~~~~v~s~GPTTs~RMd~~~~~~l~~~G~----~~~iGKG~~~~~~~ea~~~~kavyl~~~gGaA~L~a~~IK~ 137 (184)
T COG1838 68 ------DGWVVGSAGPTTSGRMDKFTDELLEQTGV----LAMIGKGGRGPETVEACKKHKAVYLVAPGGAAALAAKSIKS 137 (184)
T ss_pred ------CCceeeccCCcchhhhhhhHHHHHHhcCe----EEEEecCCcCHHHHHHHHHcCeEEEEccchHHHHHHHhhhh
Confidence 39999999999999999998865444443 23333 7899999988777666510 001111
Q ss_pred ccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHH
Q 010562 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELN 469 (507)
Q Consensus 426 ~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~ 469 (507)
.+++...+-|++-+ +++ .+++| |++|+|-..-.+--+|..
T Consensus 138 ~~~v~~~dLGmEAi-w~l-eVe~f--PliV~iDs~Gn~~~~~~~ 177 (184)
T COG1838 138 VRCVAYEDLGMEAI-WEL-EVEDF--PLIVAIDSKGNSLFKEGP 177 (184)
T ss_pred eeeEeecccChhhe-eEE-Eeccc--cEEEEEeCCCcChhhhcc
Confidence 12333333333111 111 13445 999999776666555554
No 214
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=59.83 E-value=34 Score=35.34 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=61.1
Q ss_pred ehHHHhcCCCCCccCCCCCcccccccCHHHHHHH--HhhHHHHHHHHhhcCCcEEEE--ecCCCCCCHHHHHHHHHHHHH
Q 010562 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGANVVVA--VNMFATDSKAELNAVRNAAMA 477 (507)
Q Consensus 402 vRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G--~~NL~kHIeni~~fGvpvVVA--IN~F~tDT~~Ei~~v~~~~~~ 477 (507)
++.||-. |+..+..|- +....+-++.+.++ .+...+-|++++++|++.|.+ |=-+|.+|.+++....+++.+
T Consensus 103 l~~l~~~-Gv~risiGv---qS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~ 178 (360)
T TIGR00539 103 CKGLKGA-GINRLSLGV---QSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKE 178 (360)
T ss_pred HHHHHHc-CCCEEEEec---ccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHc
Confidence 4777776 577777773 44556667777553 567888899999999975433 566899999999999999999
Q ss_pred cCCCeEEEcc
Q 010562 478 AGAFDAVVCS 487 (507)
Q Consensus 478 ~g~~~~~~~~ 487 (507)
.++..+.+..
T Consensus 179 l~~~~is~y~ 188 (360)
T TIGR00539 179 LPINHLSAYA 188 (360)
T ss_pred cCCCEEEeec
Confidence 9997554443
No 215
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.66 E-value=10 Score=40.64 Aligned_cols=79 Identities=24% Similarity=0.294 Sum_probs=51.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC-CccccccCCCCCCceeeecCcccccccchhhh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG-PTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlG-P~FGiKGGAaGGGysQViPmediNLHfTGD~H 147 (507)
.++|-|||.+ ||||||-=|++-| ...|+++.++= .+| |...... +..|. |+=+..+.|+++--||
T Consensus 104 ~~~IaVTGTn------GKTTTt~ll~~iL-~~~g~~~~~~G---niG~p~l~~~~---~~~~~-VlE~ss~ql~~~~~~~ 169 (454)
T PRK01368 104 LKFIAITGTN------GKSTTTALISHIL-NSNGLDYPVAG---NIGVPALQAKA---SKDGY-VLELSSFQLDLVKTFT 169 (454)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HhcCCCeEEEc---cCCHHHhcccC---CCCEE-EEEcCchhhccccccC
Confidence 4789999875 9999999999999 58899876541 122 2222222 23455 8889999988876453
Q ss_pred H-HHHHHhHHHHHHH
Q 010562 148 A-ITAANNLLAAAID 161 (507)
Q Consensus 148 A-ItaAnNLlaA~iD 161 (507)
. |..=.|+=..=+|
T Consensus 170 P~iavitNI~~DHLd 184 (454)
T PRK01368 170 AKIAVLLNITPDHLD 184 (454)
T ss_pred CCEEEEecCChhHhh
Confidence 2 2223455444444
No 216
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=59.54 E-value=19 Score=32.69 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=35.1
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccC
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGG 123 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGG 123 (507)
.|.|.| |.+.||||+.--|..-| ...|.+..+...-.--.+.|..-|-
T Consensus 2 vv~VvG----~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~g~~~~d~pG~ 49 (140)
T PF03205_consen 2 VVQVVG----PKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDHGQFEIDPPGT 49 (140)
T ss_dssp EEEEEE----STTSSHHHHHHHHHHHH-HHTT--EEEEEE-STTSTTCSTTCH
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHH-hHcCCceEEEEEccCCCcccCCCCc
Confidence 567777 46999999999999999 4789998877776555556666665
No 217
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=59.49 E-value=7.6 Score=40.09 Aligned_cols=41 Identities=44% Similarity=0.426 Sum_probs=32.9
Q ss_pred CCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccC
Q 010562 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGG 123 (507)
Q Consensus 82 ~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGG 123 (507)
=|-|||||+.-|+-|| +..||+.+..==.|--=-|+=+-||
T Consensus 10 GGIGKSTts~N~aAAl-a~~GkkVl~vGCDPKaDSTr~Llgg 50 (278)
T COG1348 10 GGIGKSTTSQNLAAAL-AELGKKVLIVGCDPKADSTRLLLGG 50 (278)
T ss_pred CCcCcchhHHHHHHHH-HHcCCeEEEEcCCCCcchHHHHhCC
Confidence 4889999999999999 5899999987667766556555554
No 218
>PLN02165 adenylate isopentenyltransferase
Probab=59.18 E-value=7.4 Score=41.07 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=24.6
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++.|++|++.| |-|.||||+++-|++.++
T Consensus 40 ~~~g~iivIiG----PTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMG----ATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEEC----CCCCcHHHHHHHHHHHcC
Confidence 46799999988 449999999999999884
No 219
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=59.17 E-value=11 Score=39.28 Aligned_cols=33 Identities=30% Similarity=0.189 Sum_probs=28.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.|.|-|||.+ ||||||-=|++.| ...|++++++
T Consensus 102 ~~~I~VTGT~------GKTTTt~li~~iL-~~~g~~~~~~ 134 (433)
T TIGR01087 102 LPVVAITGTN------GKTTTTSLLYHLL-KAAGLKAFLG 134 (433)
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhcCCCeEEE
Confidence 5799999986 9999999999999 5889886543
No 220
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=59.03 E-value=9 Score=33.90 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=20.3
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhh
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~ 100 (507)
...+++|+|+| |.|.||||+..-+.+.+..+
T Consensus 21 ~~~~~~~ll~G----~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 21 SGSPRNLLLTG----ESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp S-----EEE-B-----TTSSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEC----CCCCCHHHHHHHHHHHHHhc
Confidence 35689999999 68999999999888888533
No 221
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=58.68 E-value=7 Score=36.77 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcccccccCcCc
Q 010562 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGA 496 (507)
Q Consensus 443 Ieni~~fGvpvVVAIN~F~tDT~~Ei~-~v~~~~~~~g~~~~~~~~~wa~GG~Ga 496 (507)
...++.+|+|+||++|+...=.+..+. -..++.+..|++ ++... +..|+|-
T Consensus 98 ~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi~~s--a~~~~g~ 149 (156)
T PF02421_consen 98 TLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VIPVS--ARTGEGI 149 (156)
T ss_dssp HHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEB--TTTTBTH
T ss_pred HHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EEEEE--eCCCcCH
Confidence 445668999999999996211111110 145566678997 44333 4455553
No 222
>PRK15452 putative protease; Provisional
Probab=58.62 E-value=28 Score=37.87 Aligned_cols=88 Identities=23% Similarity=0.262 Sum_probs=55.1
Q ss_pred CcceEEEEeeehHHHh--cCCCCCccCCCCCcc-cccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHH
Q 010562 392 TPQCAVIVATIRALKM--HGGGPQVVAGKPLDH-AYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAEL 468 (507)
Q Consensus 392 ~PdavVlVaTvRALK~--HGG~~~~~~g~pL~~-~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei 468 (507)
+|...|-|-|.-+||. +.|+..+-.|-+-.. .....|.. .+.|++.++-+++.|+.+.|++|.++.+ +|+
T Consensus 3 ~peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~-----~edl~eav~~ah~~g~kvyvt~n~i~~e--~el 75 (443)
T PRK15452 3 KPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN-----HENLALGINEAHALGKKFYVVVNIAPHN--AKL 75 (443)
T ss_pred ccEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCC-----HHHHHHHHHHHHHcCCEEEEEecCcCCH--HHH
Confidence 3677777777777764 356666666532111 00011111 2347788888999999999999999884 666
Q ss_pred HHHHHHHH---HcCCCeEEEc
Q 010562 469 NAVRNAAM---AAGAFDAVVC 486 (507)
Q Consensus 469 ~~v~~~~~---~~g~~~~~~~ 486 (507)
+.+.++.+ +.|+..++++
T Consensus 76 ~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 76 KTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred HHHHHHHHHHHhCCCCEEEEc
Confidence 66655544 7888644443
No 223
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=58.53 E-value=4.9 Score=35.96 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=24.7
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlG 115 (507)
|.|.||||.+.-|.+-+..+.+.....+-|+|..|
T Consensus 7 psGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~ 41 (137)
T cd00071 7 PSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPG 41 (137)
T ss_pred CCCCCHHHHHHHHHhcCCccceecccccccCCCCC
Confidence 67999999888887765434445555567888755
No 224
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=58.40 E-value=7.2 Score=40.33 Aligned_cols=35 Identities=43% Similarity=0.415 Sum_probs=25.7
Q ss_pred CCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010562 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 82 ~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~ 117 (507)
=|-|||||+--|+-|| +..|++++..==.|--=-|
T Consensus 9 GGIGKST~~~Nlsaal-a~~G~kVl~iGCDPK~DST 43 (273)
T PF00142_consen 9 GGIGKSTTASNLSAAL-AEMGKKVLQIGCDPKADST 43 (273)
T ss_dssp TTSSHHHHHHHHHHHH-HHTT--EEEEEESSSSTSS
T ss_pred CCcccChhhhHHHHHH-HhccceeeEecccCCCccc
Confidence 3889999999999999 6999998866555544333
No 225
>PLN03126 Elongation factor Tu; Provisional
Probab=58.37 E-value=16 Score=39.88 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=45.8
Q ss_pred ccccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 010562 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (507)
Q Consensus 377 GaEKF~dIKCR~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvp-vV 454 (507)
|-++|+ ++-.+|+. +|++++|.-... |. ...-++|+..++.+|+| .|
T Consensus 153 Gh~~f~--~~~~~g~~~aD~ailVVda~~-----G~------------------------~~qt~e~~~~~~~~gi~~iI 201 (478)
T PLN03126 153 GHADYV--KNMITGAAQMDGAILVVSGAD-----GP------------------------MPQTKEHILLAKQVGVPNMV 201 (478)
T ss_pred CHHHHH--HHHHHHHhhCCEEEEEEECCC-----CC------------------------cHHHHHHHHHHHHcCCCeEE
Confidence 345565 45566664 889999874331 11 12347899999999999 78
Q ss_pred EEecCCCCCCHHH----HH-HHHHHHHHcCC
Q 010562 455 VAVNMFATDSKAE----LN-AVRNAAMAAGA 480 (507)
Q Consensus 455 VAIN~F~tDT~~E----i~-~v~~~~~~~g~ 480 (507)
|+||+...=+++| +. .++++.+..|.
T Consensus 202 vvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 202 VFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred EEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999986433333 22 44555555543
No 226
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=58.33 E-value=8.8 Score=38.81 Aligned_cols=65 Identities=34% Similarity=0.454 Sum_probs=41.0
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCC-----CCHHH-HHHHHHHHHHcCCCeEEEcccccccCcCcccCCCCCCC
Q 010562 437 VNLARHIANTKAYGANVVVAVNMFAT-----DSKAE-LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSDLPPLDL 505 (507)
Q Consensus 437 ~NL~kHIeni~~fGvpvVVAIN~F~t-----DT~~E-i~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~~~~~~~ 505 (507)
++|++=++.++++|..|++.=|.+.. -|++| .+.+.+..+.--+. +++| ..||.|+...||-||.
T Consensus 14 ~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~-aI~~---~rGGyg~~rlL~~ld~ 84 (284)
T PF02016_consen 14 ERLERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEID-AIWC---ARGGYGANRLLPYLDY 84 (284)
T ss_dssp HHHHHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEE-EEEE---S--SS-GGGGGGGCHH
T ss_pred HHHHHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCC-EEEE---eeccccHHHHHhcccc
Confidence 35555567778899999999776554 45555 44555555554553 6655 6899999999999873
No 227
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=58.23 E-value=9.5 Score=36.72 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=27.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
..|-+.+.|+ -|-||||.++||+--. ...|+++.+.
T Consensus 4 ~~Gli~v~~g-----~GkGKtt~a~g~a~ra-~~~g~~v~iv 39 (173)
T TIGR00708 4 ERGIIIVHTG-----NGKGKTTAAFGMALRA-LGHGKKVGVI 39 (173)
T ss_pred cccEEEEECC-----CCCChHHHHHHHHHHH-HHCCCeEEEE
Confidence 3577777765 6999999999998877 3678886543
No 228
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=57.96 E-value=12 Score=39.57 Aligned_cols=38 Identities=37% Similarity=0.433 Sum_probs=30.7
Q ss_pred ecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010562 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 76 aitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlG 115 (507)
+||=+| |.||||+.=.|.+-| .+-|+++.+--=.||--
T Consensus 55 GITG~P-GaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 55 GITGVP-GAGKSTLIEALGREL-RERGHRVAVLAVDPSSP 92 (323)
T ss_pred EecCCC-CCchHHHHHHHHHHH-HHCCcEEEEEEECCCCC
Confidence 555555 999999999999999 58899877776677754
No 229
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=57.67 E-value=9.6 Score=36.07 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=21.2
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 80 TPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
|+-|-||||.++|++-... ..|+++..
T Consensus 9 ~g~G~Gkt~~a~g~~~ra~-~~g~~v~~ 35 (159)
T cd00561 9 TGNGKGKTTAALGLALRAL-GHGYRVGV 35 (159)
T ss_pred CCCCCCHHHHHHHHHHHHH-HCCCeEEE
Confidence 3459999999999987773 56888654
No 230
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=57.42 E-value=6.9 Score=42.35 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=22.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.||-||+++ |-|.|||.+++|++|.|+
T Consensus 49 aGr~iLiaG----ppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 49 AGRAILIAG----PPGTGKTALAMAIAKELG 75 (398)
T ss_dssp TT-EEEEEE-----TTSSHHHHHHHHHHHCT
T ss_pred cCcEEEEeC----CCCCCchHHHHHHHHHhC
Confidence 599999998 779999999999999985
No 231
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=56.90 E-value=42 Score=34.19 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=38.3
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010562 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 436 ~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~ 486 (507)
+....+.|+.++++|+++.|... ...++.+|++.+.+++++.|+..+.+.
T Consensus 131 f~~v~~~i~~l~~~g~~v~v~~v-v~~~N~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 131 FEQKLAMARAVKAAGLPLTLNFV-IHRHNIDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred HHHHHHHHHHHHhCCCceEEEEE-eccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 44556677888889999877553 346788999999999999999755543
No 232
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=56.70 E-value=14 Score=32.60 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=29.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHH
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMA 477 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~ 477 (507)
.+..|++-+.++|+|+|+.-=-| ++++++.|++++++
T Consensus 79 ~~~~~~~~~~~~g~~~ViGTTG~---~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVIGTTGF---SDEQIDELEELAKK 115 (124)
T ss_dssp HHHHHHHHHHHHT-EEEEE-SSS---HHHHHHHHHHHTTT
T ss_pred HhHHHHHHHHhCCCCEEEECCCC---CHHHHHHHHHHhcc
Confidence 56678888889999999988777 68899999998876
No 233
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=56.67 E-value=45 Score=27.75 Aligned_cols=51 Identities=14% Similarity=0.164 Sum_probs=31.2
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCC--CCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 438 NLARHIANTKA---YGANVVVAVNMFAT--DSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 438 NL~kHIeni~~---fGvpvVVAIN~F~t--DT~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
.+.+.++.+.. .+.|++|++|+... +.+...+.+++++++.++. ++.++..
T Consensus 90 ~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~ 145 (159)
T cd00154 90 NLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAK 145 (159)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecC
Confidence 44444444444 46999999999765 3333345566777777775 5554443
No 234
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=56.59 E-value=33 Score=37.43 Aligned_cols=66 Identities=12% Similarity=0.185 Sum_probs=42.5
Q ss_pred ccccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 010562 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (507)
Q Consensus 377 GaEKF~dIKCR~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvp-vV 454 (507)
|-|+|. |+-.+|+. .|++++|....- |+.. ....+|+..++.+|++ +|
T Consensus 126 GH~~fi--~~m~~g~~~~D~alLVVda~~----g~~~------------------------~qT~ehl~i~~~lgi~~iI 175 (460)
T PTZ00327 126 GHDILM--ATMLNGAAVMDAALLLIAANE----SCPQ------------------------PQTSEHLAAVEIMKLKHII 175 (460)
T ss_pred CHHHHH--HHHHHHHhhCCEEEEEEECCC----Cccc------------------------hhhHHHHHHHHHcCCCcEE
Confidence 446663 66666666 789988886541 1110 1235788888899997 68
Q ss_pred EEecCCCCCCHHHHHHHH
Q 010562 455 VAVNMFATDSKAELNAVR 472 (507)
Q Consensus 455 VAIN~F~tDT~~Ei~~v~ 472 (507)
|+||+-.--++++++.+.
T Consensus 176 VvlNKiDlv~~~~~~~~~ 193 (460)
T PTZ00327 176 ILQNKIDLVKEAQAQDQY 193 (460)
T ss_pred EEEecccccCHHHHHHHH
Confidence 899997654455544433
No 235
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=56.55 E-value=67 Score=28.80 Aligned_cols=105 Identities=17% Similarity=0.269 Sum_probs=55.6
Q ss_pred CeEEeeccccccc---ccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHH
Q 010562 364 GFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 440 (507)
Q Consensus 364 dyVVTEAGFGaDl---GaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~ 440 (507)
++.|+--|++-+- ..+++- -.....+||.||+-. |......+ ..++...+ |++
T Consensus 31 ~~~v~n~g~~G~~~~~~l~~l~---~~~~~~~~d~v~i~~---------G~ND~~~~---------~~~~~~~~---~~~ 86 (183)
T cd04501 31 GKEVINRGINGDTTSQMLVRFY---EDVIALKPAVVIIMG---------GTNDIIVN---------TSLEMIKD---NIR 86 (183)
T ss_pred CCeEEecCcCCccHHHHHHHHH---HHHHhcCCCEEEEEe---------ccCccccC---------CCHHHHHH---HHH
Confidence 5666666777543 112221 112456899876654 44322111 13445554 455
Q ss_pred HHHHHHhhcCCcEEEEe----cCCCC-----CCHHHHH----HHHHHHHHcCCCeEEEccccccc
Q 010562 441 RHIANTKAYGANVVVAV----NMFAT-----DSKAELN----AVRNAAMAAGAFDAVVCSHHAHG 492 (507)
Q Consensus 441 kHIeni~~fGvpvVVAI----N~F~t-----DT~~Ei~----~v~~~~~~~g~~~~~~~~~wa~G 492 (507)
+=|+-+++.|.++|+.. +.... .+.++++ .++++|++.++.-+-+.+.|.+.
T Consensus 87 ~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~~vd~~~~~~~~ 151 (183)
T cd04501 87 SMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARENGLLFLDFYSPLLDE 151 (183)
T ss_pred HHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHcCCCEEechhhhhcc
Confidence 55666688899888764 22221 1234443 47888998888733344444443
No 236
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=56.48 E-value=16 Score=36.14 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=26.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
|.|..++|+| |.|.||||.+.=++-.. .+.|.+++
T Consensus 34 p~gs~~lI~G----~pGtGKT~l~~qf~~~~-a~~Ge~vl 68 (259)
T TIGR03878 34 PAYSVINITG----VSDTGKSLMVEQFAVTQ-ASRGNPVL 68 (259)
T ss_pred ECCcEEEEEc----CCCCCHHHHHHHHHHHH-HhCCCcEE
Confidence 5799999999 57999999998865544 23466643
No 237
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.32 E-value=12 Score=39.44 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=28.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
+.+.|-|||.+ ||||||-=|++.| ...|+++..
T Consensus 121 ~~~~I~VTGTn------GKTTTt~mi~~iL-~~~g~~~~~ 153 (480)
T PRK01438 121 PAPWLAVTGTN------GKTTTVQMLASML-RAAGLRAAA 153 (480)
T ss_pred CCCEEEEeCCC------cHHHHHHHHHHHH-HHcCCCeEE
Confidence 46799999985 9999999999999 588988654
No 238
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=56.30 E-value=7.1 Score=35.77 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=23.8
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
+|.|+|+ -|.||||.+--|.+-+ | +.+++||.
T Consensus 1 ~I~ieG~----~GsGKSTl~~~L~~~~----~---~~~~~Ep~ 32 (193)
T cd01673 1 VIVVEGN----IGAGKSTLAKELAEHL----G---YEVVPEPV 32 (193)
T ss_pred CEEEECC----CCCCHHHHHHHHHHHh----C---Cccccccc
Confidence 4667775 5999999998887765 3 34679986
No 239
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=55.93 E-value=8.4 Score=40.85 Aligned_cols=28 Identities=39% Similarity=0.567 Sum_probs=24.4
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
+.||..|+|||.++.||..+| .+.|.+.
T Consensus 7 l~p~~~~~G~tsi~lgLl~~l-~~k~~kv 34 (354)
T COG0857 7 LIPTETGVGKTSISLGLLRAL-EQKGLKV 34 (354)
T ss_pred EeccCCCccHHHHHHHHHHHH-HHcCcee
Confidence 359999999999999999999 4778773
No 240
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=55.80 E-value=58 Score=31.47 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=43.5
Q ss_pred CHHHHHHHHhhHHHHHHHHhhcCCcEEEE---ecCCCCCCHHH--------HHHHHHHHHHcCCCeEEEccc
Q 010562 428 NVALVEAGCVNLARHIANTKAYGANVVVA---VNMFATDSKAE--------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 428 nl~al~~G~~NL~kHIeni~~fGvpvVVA---IN~F~tDT~~E--------i~~v~~~~~~~g~~~~~~~~~ 488 (507)
+-+..++.+.-+.++|+-.+.+|.+.||. .+.+.. +.+| ++.+.++|++.|+. .++-++
T Consensus 81 ~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~-l~iE~~ 150 (275)
T PRK09856 81 DEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLT-PPNVIWGRLAENLSELCEYAENIGMD-LILEPL 150 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCE-EEEecC
Confidence 33566778899999999999999999876 222332 3444 67788888999996 666665
No 241
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=55.77 E-value=12 Score=36.21 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=24.0
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
||+++|. -|.||||.+--|++.|. ..|.+.+
T Consensus 1 LIvl~G~----pGSGKST~a~~La~~l~-~~~~~v~ 31 (249)
T TIGR03574 1 LIILTGL----PGVGKSTFSKELAKKLS-EKNIDVI 31 (249)
T ss_pred CEEEEcC----CCCCHHHHHHHHHHHHH-HcCCceE
Confidence 4777775 59999999999999994 5565544
No 242
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=55.57 E-value=6.1 Score=32.88 Aligned_cols=18 Identities=50% Similarity=0.722 Sum_probs=16.0
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010562 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|.|.||||++--|++.|+
T Consensus 6 ~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLG 23 (132)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred cCCCCeeHHHHHHHhhcc
Confidence 789999999999988883
No 243
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=55.48 E-value=27 Score=30.49 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=30.0
Q ss_pred HhhHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCC
Q 010562 436 CVNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAF 481 (507)
Q Consensus 436 ~~NL~kHIeni~~---fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~ 481 (507)
+.++...++.+++ -++|+|++.|+..-..+. ..+...+++++.++.
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 140 (166)
T cd01869 90 FNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP 140 (166)
T ss_pred HHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe
Confidence 4455555555555 368999999997643332 235567788888875
No 244
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=55.39 E-value=9.7 Score=35.12 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=21.4
Q ss_pred CCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010562 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 82 ~GEGKTTttIGL~qaL~~~lGk~a~~~lR 110 (507)
.|.||||++.-|...|. ..|.++. .+.
T Consensus 8 ~gsGKTtl~~~l~~~l~-~~G~~V~-viK 34 (155)
T TIGR00176 8 KNSGKTTLIERLVKALK-ARGYRVA-TIK 34 (155)
T ss_pred CCCCHHHHHHHHHHHHH-hcCCeEE-EEe
Confidence 49999999999999994 6687644 444
No 245
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=55.34 E-value=45 Score=28.68 Aligned_cols=40 Identities=8% Similarity=-0.098 Sum_probs=26.4
Q ss_pred hcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccc
Q 010562 448 AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 448 ~fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
..++|+||++|+..-..+. ..+...+++++.+.. +..++.
T Consensus 105 ~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 146 (164)
T cd04145 105 RDEFPMILVGNKADLEHQRKVSREEGQELARKLKIP-YIETSA 146 (164)
T ss_pred CCCCCEEEEeeCccccccceecHHHHHHHHHHcCCc-EEEeeC
Confidence 3589999999998654332 233466778877875 444443
No 246
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.02 E-value=15 Score=41.49 Aligned_cols=28 Identities=39% Similarity=0.596 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|++|.++| || |.|||||+.-|+-.+.
T Consensus 348 ~~G~vIaLVG--Pt--GvGKTTtaakLAa~la 375 (559)
T PRK12727 348 ERGGVIALVG--PT--GAGKTTTIAKLAQRFA 375 (559)
T ss_pred cCCCEEEEEC--CC--CCCHHHHHHHHHHHHH
Confidence 3588888887 44 9999999999988773
No 247
>PRK05439 pantothenate kinase; Provisional
Probab=54.77 E-value=10 Score=39.46 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=30.1
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCccccc
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNL 140 (507)
+|.||| |-|.||||++--|.+.|+ +.. +|-..+|++||+|-+
T Consensus 88 iIgIaG----~~gsGKSTla~~L~~~l~-~~~-----------------------~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 88 IIGIAG----SVAVGKSTTARLLQALLS-RWP-----------------------EHPKVELVTTDGFLY 129 (311)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHHH-hhC-----------------------CCCceEEEecccccc
Confidence 566665 569999999999988884 331 123468999999854
No 248
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.57 E-value=19 Score=37.51 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=25.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
.+.|-|||-+ |||||+-=|++.| ...|+.+.
T Consensus 108 ~~vI~ITGS~------GKTTt~~~l~~iL-~~~g~~~~ 138 (450)
T PRK14106 108 APIVAITGTN------GKTTTTTLLGEIF-KNAGRKTL 138 (450)
T ss_pred CCEEEEeCCC------chHHHHHHHHHHH-HHcCCCeE
Confidence 6788888874 9999999999999 47887543
No 249
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.57 E-value=15 Score=39.23 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=20.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+++|++.| || |.|||||+.-|+-.+.
T Consensus 174 ~~vi~lvG--pt--GvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 174 KRVFILVG--PT--GVGKTTTIAKLAAIYG 199 (388)
T ss_pred CeEEEEEC--CC--CCCHHHHHHHHHHHHH
Confidence 45666644 55 9999999999998773
No 250
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.50 E-value=13 Score=38.91 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
.+.|-|||.+ ||||||-=|++.| .+.|+++.+
T Consensus 108 ~~~I~VTGT~------GKTTTt~li~~iL-~~~g~~~~~ 139 (448)
T PRK03803 108 APVIAITGSN------GKSTVTTLVGEMA-KAAGKRVAV 139 (448)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HhcCCCeEE
Confidence 5799999986 9999999999999 588987654
No 251
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=54.45 E-value=9.9 Score=37.99 Aligned_cols=33 Identities=33% Similarity=0.349 Sum_probs=27.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
|-++||| |.-|-|||++|-+|+|+| +.-|.+++
T Consensus 3 ~~~fVtG---TDT~VGKTv~S~aL~~~l-~~~g~~~~ 35 (223)
T COG0132 3 KRFFVTG---TDTGVGKTVVSAALAQAL-KQQGYSVA 35 (223)
T ss_pred ceEEEEe---CCCCccHHHHHHHHHHHH-HhCCCeeE
Confidence 4577777 678999999999999999 47788865
No 252
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=54.35 E-value=14 Score=42.32 Aligned_cols=35 Identities=31% Similarity=0.308 Sum_probs=29.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.++++||| ++|.||||+..++.+++ ...|.+.+.|
T Consensus 368 ~~~~il~G----~aGTGKTtll~~i~~~~-~~~g~~V~~~ 402 (744)
T TIGR02768 368 GDIAVVVG----RAGTGKSTMLKAAREAW-EAAGYRVIGA 402 (744)
T ss_pred CCEEEEEe----cCCCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 46899998 68999999999999999 4678876655
No 253
>PLN02748 tRNA dimethylallyltransferase
Probab=54.30 E-value=9.1 Score=41.98 Aligned_cols=83 Identities=22% Similarity=0.239 Sum_probs=45.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh-hhcCCcEEEEecCCCCC---CccccccCCCCCCceeeecCccccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG-AFLDKKVVTCLRQPSQG---PTFGIKGGAAGGGYSQVIPMDEFNLHL 142 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~-~~lGk~a~~~lRePSlG---P~FGiKGGAaGGGysQViPmediNLHf 142 (507)
+++++|+|+| |-|.||||+++-|++.++ ..+.-.++-.-|.=..| |+---.-|.-=--+.-|-|-|++|.
T Consensus 20 ~~~~~i~i~G----ptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv-- 93 (468)
T PLN02748 20 GKAKVVVVMG----PTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTA-- 93 (468)
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcH--
Confidence 5688999988 459999999999999884 23344443333322221 1111111222223344556666766
Q ss_pred chhhhHHHHHHhHHHH
Q 010562 143 TGDIHAITAANNLLAA 158 (507)
Q Consensus 143 TGD~HAItaAnNLlaA 158 (507)
||| ...|..++..
T Consensus 94 -~~F--~~~A~~~I~~ 106 (468)
T PLN02748 94 -KDF--RDHAVPLIEE 106 (468)
T ss_pred -HHH--HHHHHHHHHH
Confidence 566 3344444443
No 254
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=54.23 E-value=29 Score=31.38 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=24.8
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHH----HHHHHHHHHHcC
Q 010562 444 ANTKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAG 479 (507)
Q Consensus 444 eni~~fGvpvVVAIN~F~tDT~~E----i~~v~~~~~~~g 479 (507)
+.++.+++|+++++|+.....+++ ++.+++++...+
T Consensus 123 ~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 123 EWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 334568999999999987655554 455566666554
No 255
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=54.17 E-value=45 Score=30.78 Aligned_cols=33 Identities=6% Similarity=-0.034 Sum_probs=23.5
Q ss_pred hcCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCC
Q 010562 448 AYGANVVVAVNMFATD--SKAELNAVRNAAMAAGA 480 (507)
Q Consensus 448 ~fGvpvVVAIN~F~tD--T~~Ei~~v~~~~~~~g~ 480 (507)
...+|+||+.|+-.-. .....+.+.++|++.+.
T Consensus 108 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (201)
T cd04107 108 GEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGF 142 (201)
T ss_pred CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC
Confidence 4679999999997653 22334556788888884
No 256
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=54.10 E-value=19 Score=37.68 Aligned_cols=82 Identities=22% Similarity=0.173 Sum_probs=50.0
Q ss_pred HccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhccC-CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhc
Q 010562 23 ANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEG-SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 101 (507)
Q Consensus 23 a~~~~~~~I~~iA~~lGi~~~~le~YG~~kAKi~l~~l~~~~~-~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~l 101 (507)
.+.........||+-+-+-++.-.-+ . .....+++++.. .++..+|-||| |-|.||||++--|...|. ..
T Consensus 13 ~~~~~~g~~~a~a~~it~~e~~~~~~-~---~~~~~l~~~~~~~~~~~~~igi~G----~~GaGKSTl~~~l~~~l~-~~ 83 (332)
T PRK09435 13 VEGVLAGDRAALARAITLVESTRPDH-R---ALAQELLDALLPHTGNALRIGITG----VPGVGKSTFIEALGMHLI-EQ 83 (332)
T ss_pred HHHHHcCCHHHHHHHHHHHhCCCchh-h---HHHHHHHHHHhhcCCCcEEEEEEC----CCCCCHHHHHHHHHHHHH-HC
Confidence 33333345566777666554432111 1 112345555432 23445677776 479999999999999995 67
Q ss_pred CCcEEEEecCCC
Q 010562 102 DKKVVTCLRQPS 113 (507)
Q Consensus 102 Gk~a~~~lRePS 113 (507)
|+++.+.-=.||
T Consensus 84 g~~v~vi~~Dp~ 95 (332)
T PRK09435 84 GHKVAVLAVDPS 95 (332)
T ss_pred CCeEEEEEeCCC
Confidence 988877766665
No 257
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.06 E-value=14 Score=39.72 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=26.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
.|+|-|||.+ ||||||-=|++.| ...|+++..
T Consensus 117 ~~vIgITGTn------GKTTTt~li~~iL-~~~g~~~~~ 148 (488)
T PRK03369 117 RRWLVVTGTN------GKTTTTSMLHAML-IAAGRRSVL 148 (488)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HHcCCceEE
Confidence 4689888875 9999999999999 578887654
No 258
>PLN02840 tRNA dimethylallyltransferase
Probab=54.02 E-value=9 Score=41.61 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=23.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+++|+++| |.|.||||+++-|++.++
T Consensus 19 ~~~~vi~I~G----ptgsGKTtla~~La~~~~ 46 (421)
T PLN02840 19 KKEKVIVISG----PTGAGKSRLALELAKRLN 46 (421)
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHCC
Confidence 4577888877 569999999999999985
No 259
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=53.91 E-value=9.4 Score=35.46 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|+.|++++ |-|.||||+.-.|..-+
T Consensus 23 ~~g~~i~I~G----~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISG----GTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEEC----CCCCCHHHHHHHHHhhc
Confidence 3588999999 77999999998888777
No 260
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=53.87 E-value=18 Score=34.99 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.+++|+| |.|.||||++.-++..+
T Consensus 28 ~~g~~~~i~g----~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 28 RKGELIILTA----GTGVGKTTFLREYALDL 54 (271)
T ss_pred cCCcEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 5699999998 56999999999887776
No 261
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.75 E-value=10 Score=41.01 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..|+||++| |-|.|||+..-+|+|-|.
T Consensus 176 ~NRliLlhG----PPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 176 WNRLILLHG----PPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeEEEEeC----CCCCChhHHHHHHHHhhe
Confidence 368999998 889999999999999995
No 262
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=53.73 E-value=21 Score=34.86 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=24.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
+.|..++|++ |.|.||||++.-+...+. +-|.+
T Consensus 22 ~~g~~~~i~G----~~G~GKTtl~~~~~~~~~-~~g~~ 54 (230)
T PRK08533 22 PAGSLILIEG----DESTGKSILSQRLAYGFL-QNGYS 54 (230)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHHH-hCCCc
Confidence 6789999998 569999999877766662 44544
No 263
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=53.72 E-value=8.9 Score=43.48 Aligned_cols=31 Identities=35% Similarity=0.468 Sum_probs=24.9
Q ss_pred cCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 64 EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 64 ~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..+-.+++.|+|| |+|.|||||--=|+.-|+
T Consensus 105 ~~~l~~~iLLltG----PsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 105 TPKLGSRILLLTG----PSGCGKSTTVKVLSKELG 135 (634)
T ss_pred ccCCCceEEEEeC----CCCCCchhHHHHHHHhhC
Confidence 3345678999998 899999999887777663
No 264
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=53.71 E-value=20 Score=33.88 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=38.9
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchh
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGD 145 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD 145 (507)
-+.|.+++|+| |.|.||||.+.-++-.+....|.+ =|.|+.+
T Consensus 10 l~~G~l~lI~G----~~G~GKT~~~~~~~~~~~~~~g~~----------------------------------vly~s~E 51 (242)
T cd00984 10 LQPGDLIIIAA----RPSMGKTAFALNIAENIAKKQGKP----------------------------------VLFFSLE 51 (242)
T ss_pred CCCCeEEEEEe----CCCCCHHHHHHHHHHHHHHhCCCc----------------------------------eEEEeCC
Confidence 36799999999 469999999988765553221222 2567777
Q ss_pred hhHHHHHHhHHHH
Q 010562 146 IHAITAANNLLAA 158 (507)
Q Consensus 146 ~HAItaAnNLlaA 158 (507)
.+.-...+++++.
T Consensus 52 ~~~~~~~~r~~~~ 64 (242)
T cd00984 52 MSKEQLLQRLLAS 64 (242)
T ss_pred CCHHHHHHHHHHH
Confidence 7777777877664
No 265
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=53.53 E-value=37 Score=30.75 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 440 ~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
.+-++.++++++|+.+.+|++...+.. .+.+++++++.|..
T Consensus 133 ~~~~~~l~~~~~~~~vV~N~~~~~~~~-~~~~~~~~~~~~~~ 173 (179)
T cd03110 133 ERAVELVRHFGIPVGVVINKYDLNDEI-AEEIEDYCEEEGIP 173 (179)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCcch-HHHHHHHHHHcCCC
Confidence 333455567799999999999876543 34567888888886
No 266
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=53.34 E-value=11 Score=41.78 Aligned_cols=30 Identities=40% Similarity=0.595 Sum_probs=24.4
Q ss_pred CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 65 GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 65 ~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..+..++.|+|| |+|.|||||.-=|++-|+
T Consensus 41 ~~~~~~iLlLtG----P~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 41 GSSPKRILLLTG----PSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cCCCcceEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 334577889998 899999999988888774
No 267
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=53.08 E-value=17 Score=42.89 Aligned_cols=54 Identities=35% Similarity=0.504 Sum_probs=41.6
Q ss_pred cccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEE
Q 010562 376 IGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 455 (507)
Q Consensus 376 lGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVV 455 (507)
-|-|.|-|.+.|-|.|. |.++||.-| |||=-|+ -+| -|+++|.-..|.||
T Consensus 548 pghEsFtnlRsrgsslC-~~aIlvvdI----mhGlepq--------------tiE-----------Si~lLR~rktpFiv 597 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLC-DLAILVVDI----MHGLEPQ--------------TIE-----------SINLLRMRKTPFIV 597 (1064)
T ss_pred CCchhhhhhhhcccccc-ceEEEEeeh----hccCCcc--------------hhH-----------HHHHHHhcCCCeEE
Confidence 46899999999999997 677777766 7873322 111 36778888999999
Q ss_pred EecC
Q 010562 456 AVNM 459 (507)
Q Consensus 456 AIN~ 459 (507)
|+|+
T Consensus 598 ALNK 601 (1064)
T KOG1144|consen 598 ALNK 601 (1064)
T ss_pred eehh
Confidence 9997
No 268
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=53.07 E-value=49 Score=27.10 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcCcc
Q 010562 441 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAV 497 (507)
Q Consensus 441 kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~ 497 (507)
+.+.+....++|++|++|+..--.++..+...+.....+-..++.+ =+..|+|..
T Consensus 99 ~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--sa~~~~gv~ 153 (161)
T TIGR00231 99 KEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPL--SAETGKNID 153 (161)
T ss_pred HHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEe--ecCCCCCHH
Confidence 3344433348999999998765443333444444444433322222 255566543
No 269
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=52.92 E-value=28 Score=39.17 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=28.5
Q ss_pred hHHHHHHHHhhcCCcE-EEEecCCCCCCHHHHHH----HHHHHHHcC
Q 010562 438 NLARHIANTKAYGANV-VVAVNMFATDSKAELNA----VRNAAMAAG 479 (507)
Q Consensus 438 NL~kHIeni~~fGvpv-VVAIN~F~tDT~~Ei~~----v~~~~~~~g 479 (507)
.-..|++.++.+|+|. ||++|+..--++++++. +++++++.|
T Consensus 91 qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~ 137 (614)
T PRK10512 91 QTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYG 137 (614)
T ss_pred HHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcC
Confidence 4456778888999995 79999987655555544 444444445
No 270
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=52.88 E-value=7.6 Score=33.25 Aligned_cols=18 Identities=50% Similarity=0.711 Sum_probs=15.4
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010562 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|.|.||||++..|+..++
T Consensus 7 ~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 7 PAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 469999999999988773
No 271
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=52.74 E-value=13 Score=37.67 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.++.|+++|+ -|.||||++.-|++.|+
T Consensus 132 ~~~~I~l~G~----~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGL----RGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 5789999997 59999999988887773
No 272
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=52.54 E-value=15 Score=38.49 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=43.3
Q ss_pred HHHHHHHcCCCCcchhcccCc----eeeecch--hhhhc-c--CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhc
Q 010562 31 ISEIAQELNLKPNHYDLYGKY----KAKVLLS--VLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 101 (507)
Q Consensus 31 I~~iA~~lGi~~~~le~YG~~----kAKi~l~--~l~~~-~--~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~l 101 (507)
+.+|-+++|=. .+-..|.. ..+++.. -||.+ . .=|.|.+++|.+ |.|.||||++.-++-.. .+.
T Consensus 10 ~~~i~~~~g~~--~~~~~~~~~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~G----p~GsGKTtLal~~~~~~-~~~ 82 (325)
T cd00983 10 LKQIEKKFGKG--SIMKLGDDAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYG----PESSGKTTLALHAIAEA-QKL 82 (325)
T ss_pred HHHHHHHhCCc--ceEECccccccCCceecCCCHHHHHHhcCCCccCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHc
Confidence 56676666642 23333321 2234332 34443 2 347899999999 78999999999987776 355
Q ss_pred CCcEE
Q 010562 102 DKKVV 106 (507)
Q Consensus 102 Gk~a~ 106 (507)
|.+++
T Consensus 83 g~~~v 87 (325)
T cd00983 83 GGTVA 87 (325)
T ss_pred CCCEE
Confidence 66554
No 273
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=52.31 E-value=73 Score=28.10 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=28.9
Q ss_pred HhhHHHHHHHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 436 CVNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 436 ~~NL~kHIeni~~f--GvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
+.++.+.++.++++ ++|++|+.|+-.-+. ++.+...+++++.+..
T Consensus 88 ~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~ 134 (161)
T cd04124 88 YKNLSKWYEELREYRPEIPCIVVANKIDLDP-SVTQKKFNFAEKHNLP 134 (161)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEECccCch-hHHHHHHHHHHHcCCe
Confidence 44555666666654 899999999976432 2233445667666665
No 274
>PRK10536 hypothetical protein; Provisional
Probab=52.25 E-value=23 Score=36.46 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=26.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHH-HHhhhcCCcEEEEec
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKVVTCLR 110 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~q-aL~~~lGk~a~~~lR 110 (507)
.++|++|| |+|.|||++++.++. +|-+. ..+.++..|
T Consensus 74 ~~lV~i~G----~aGTGKT~La~a~a~~~l~~~-~~~kIiI~R 111 (262)
T PRK10536 74 KQLIFATG----EAGCGKTWISAAKAAEALIHK-DVDRIIVTR 111 (262)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHHhcC-CeeEEEEeC
Confidence 46999998 799999999999988 44121 245455555
No 275
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=52.25 E-value=35 Score=28.88 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=32.0
Q ss_pred HhhHHHHHHHHhhcCCc-EEEEecCCCCCCHHHHHHHHHH
Q 010562 436 CVNLARHIANTKAYGAN-VVVAVNMFATDSKAELNAVRNA 474 (507)
Q Consensus 436 ~~NL~kHIeni~~fGvp-vVVAIN~F~tDT~~Ei~~v~~~ 474 (507)
++...+-++.+++.|+| ++..+=-++.+|++|++.+.++
T Consensus 126 ~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~ 165 (166)
T PF04055_consen 126 FERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRF 165 (166)
T ss_dssp HHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCc
Confidence 44666677888889999 7888888999999999888776
No 276
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=52.21 E-value=30 Score=30.02 Aligned_cols=38 Identities=21% Similarity=0.022 Sum_probs=22.7
Q ss_pred cCCcEEEEecCCCCCCHHHHHH--HHHHHHHcCCCeEEEcc
Q 010562 449 YGANVVVAVNMFATDSKAELNA--VRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~Ei~~--v~~~~~~~g~~~~~~~~ 487 (507)
.++|+||++|+.....+.++.. ...++...+.. ...++
T Consensus 106 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 145 (164)
T cd04101 106 KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTS 145 (164)
T ss_pred CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEe
Confidence 5799999999986543333322 23455556654 44443
No 277
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=51.94 E-value=7.6 Score=35.17 Aligned_cols=16 Identities=50% Similarity=0.628 Sum_probs=15.0
Q ss_pred CCCcchhHhhHHHHHh
Q 010562 83 GEGKSTTTVGLCQALG 98 (507)
Q Consensus 83 GEGKTTttIGL~qaL~ 98 (507)
|.||||+..-|++.|+
T Consensus 2 GsGKStvg~~lA~~L~ 17 (158)
T PF01202_consen 2 GSGKSTVGKLLAKRLG 17 (158)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhC
Confidence 8999999999999995
No 278
>PRK12735 elongation factor Tu; Reviewed
Probab=51.94 E-value=37 Score=35.72 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhcCCcEE-EEecCCCCCCHHHH-H----HHHHHHHHcC
Q 010562 438 NLARHIANTKAYGANVV-VAVNMFATDSKAEL-N----AVRNAAMAAG 479 (507)
Q Consensus 438 NL~kHIeni~~fGvpvV-VAIN~F~tDT~~Ei-~----~v~~~~~~~g 479 (507)
...+|+..++.+|+|.+ |++|+...-+++|+ + .++++.+..+
T Consensus 115 qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 115 QTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred hHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 45589999999999966 68999765333332 2 3444555544
No 279
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=51.80 E-value=21 Score=34.59 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=28.8
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHH-HHHhhhcCCcE-EEEecC
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQ 111 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~-qaL~~~lGk~a-~~~lRe 111 (507)
=+.|..+||+| |.|.||||.+.=+. .++ +-|.++ ++++-|
T Consensus 18 ~~~gs~~lI~G----~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee 59 (237)
T TIGR03877 18 IPERNVVLLSG----GPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE 59 (237)
T ss_pred CcCCeEEEEEc----CCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC
Confidence 36799999999 88999999886543 444 347766 444544
No 280
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=51.46 E-value=13 Score=38.24 Aligned_cols=36 Identities=31% Similarity=0.260 Sum_probs=25.6
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCccccc
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNL 140 (507)
|-|.||||++--|..-|. +. |+ +|..++++|+.+.+
T Consensus 70 ~~GSGKSTlar~L~~ll~-~~----------~~-------------~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 70 SVAVGKSTTARILQALLS-RW----------PE-------------HRKVELITTDGFLH 105 (290)
T ss_pred CCCCCHHHHHHHHHHHHh-hc----------CC-------------CCceEEEecccccc
Confidence 569999999977765552 32 22 35678999998764
No 281
>PRK01184 hypothetical protein; Provisional
Probab=51.40 E-value=11 Score=34.49 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=22.5
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQ 111 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRe 111 (507)
++|++|| |-|.||||++. +++ .+|-..+.+ +|+
T Consensus 2 ~~i~l~G----~~GsGKsT~a~-~~~----~~g~~~i~~~d~lr~ 37 (184)
T PRK01184 2 KIIGVVG----MPGSGKGEFSK-IAR----EMGIPVVVMGDVIRE 37 (184)
T ss_pred cEEEEEC----CCCCCHHHHHH-HHH----HcCCcEEEhhHHHHH
Confidence 4678888 46999999875 433 456666554 565
No 282
>COG4240 Predicted kinase [General function prediction only]
Probab=51.15 E-value=13 Score=38.68 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=24.6
Q ss_pred EeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEe
Q 010562 74 VGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (507)
Q Consensus 74 VTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~l 109 (507)
+-+|+ -|-|+||||+++-|.--| .+.|-.+++.+
T Consensus 52 i~gis-GpQGSGKStls~~i~~~L-~~kg~ert~~l 85 (300)
T COG4240 52 IVGIS-GPQGSGKSTLSALIVRLL-AAKGLERTATL 85 (300)
T ss_pred EEEee-cCCCCchhhHHHHHHHHH-HHhcccceEEe
Confidence 33442 489999999999999999 57774344443
No 283
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=51.12 E-value=14 Score=42.16 Aligned_cols=70 Identities=27% Similarity=0.388 Sum_probs=48.5
Q ss_pred cccCceeeecc-hhh----hhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccc
Q 010562 47 LYGKYKAKVLL-SVL----DELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIK 121 (507)
Q Consensus 47 ~YG~~kAKi~l-~~l----~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiK 121 (507)
.||-.++|=.+ +++ ..+. ..+++++..| |-|.||||.+.-|+.+|. +. |.+-+|
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~--~~~~IL~LvG----PpG~GKSsLa~~la~~le-~~--------------~~Y~~k 136 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLE--EKKQILYLLG----PVGGGKSSLAERLKSLME-RV--------------PIYVLK 136 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcC--CCCceEEEec----CCCCCchHHHHHHHHHHH-hC--------------cceeec
Confidence 58887777553 444 2343 3456666665 779999999999999995 43 677778
Q ss_pred cCCCCCCceeeecCcccccccc
Q 010562 122 GGAAGGGYSQVIPMDEFNLHLT 143 (507)
Q Consensus 122 GGAaGGGysQViPmediNLHfT 143 (507)
||- +.-||-+==||+-
T Consensus 137 g~~------~~sP~~e~PL~L~ 152 (644)
T PRK15455 137 ANG------ERSPVNESPLGLF 152 (644)
T ss_pred CCC------CCCCCCCCCCCCC
Confidence 742 6667777777665
No 284
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=50.69 E-value=14 Score=37.88 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.7
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
||++|| +-|.||||.+--|++.|.
T Consensus 3 LiIlTG----yPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTG----YPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEec----CCCCCchHHHHHHHHHHH
Confidence 788988 469999999999999995
No 285
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=50.69 E-value=11 Score=32.27 Aligned_cols=77 Identities=26% Similarity=0.321 Sum_probs=44.3
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCc---EEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHH
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKK---VVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLA 157 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~---a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLla 157 (507)
|.|.|||+++-=|+..|..+++.. .+-. |.|.--.-=|.+|- -|+=+|||.=--++- . -+=.+.+-
T Consensus 6 ~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~-~~~~~~~w~gY~~q-------~vvi~DD~~~~~~~~--~-~~~~~~l~ 74 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDLLKHIGEPTKDSVYT-RNPGDKFWDGYQGQ-------PVVIIDDFGQDNDGY--N-YSDESELI 74 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCCCcEEe-CCCccchhhccCCC-------cEEEEeecCcccccc--c-hHHHHHHH
Confidence 459999999999999997766433 3333 77665555555532 345555543222110 0 01244556
Q ss_pred HHHHhhhhccc
Q 010562 158 AAIDTRIFHEA 168 (507)
Q Consensus 158 A~iDn~i~h~n 168 (507)
.++|+.-|.-+
T Consensus 75 ~l~s~~~~~~~ 85 (107)
T PF00910_consen 75 RLISSNPFQPN 85 (107)
T ss_pred HHHhcCCcccc
Confidence 66777766654
No 286
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=50.64 E-value=17 Score=33.15 Aligned_cols=32 Identities=38% Similarity=0.335 Sum_probs=26.5
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
+-|.||||++.-|+..+ ...|.+..+.-=.|+
T Consensus 7 ~~GsGKTt~~~~l~~~~-~~~g~~v~ii~~D~~ 38 (148)
T cd03114 7 VPGAGKSTLIDALITAL-RARGKRVAVLAIDPS 38 (148)
T ss_pred CCCCcHHHHHHHHHHHH-HHCCCEEEEEEeCCC
Confidence 57999999999999999 477888877666653
No 287
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=50.52 E-value=17 Score=36.24 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=25.3
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
|.|-|++. .|.||||+.-.|...| ...|.++.+
T Consensus 2 ~vi~ivG~----~gsGKTtl~~~l~~~L-~~~G~~V~v 34 (229)
T PRK14494 2 RAIGVIGF----KDSGKTTLIEKILKNL-KERGYRVAT 34 (229)
T ss_pred eEEEEECC----CCChHHHHHHHHHHHH-HhCCCeEEE
Confidence 35666664 3999999999999999 467877443
No 288
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=50.51 E-value=60 Score=32.03 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=35.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcC
Q 010562 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 450 GvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
|+|+-|.+-.=. =|++|+....+.|.++|+..+-.|+.|..+|.-
T Consensus 117 g~~lKvIlE~~~-L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat 161 (211)
T TIGR00126 117 GVLLKVIIETGL-LTDEEIRKACEICIDAGADFVKTSTGFGAGGAT 161 (211)
T ss_pred CCeEEEEEecCC-CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCC
Confidence 889888776433 355899999999999999866677889877643
No 289
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=50.34 E-value=15 Score=40.85 Aligned_cols=39 Identities=26% Similarity=0.208 Sum_probs=29.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
+.+++|++||.. |+||||.+-.|++.|. ..|. ....|+.
T Consensus 458 ~~~~~i~~~G~~----gsGKst~a~~l~~~l~-~~~~-~~~~l~~ 496 (632)
T PRK05506 458 QKPATVWFTGLS----GSGKSTIANLVERRLH-ALGR-HTYLLDG 496 (632)
T ss_pred CCcEEEEecCCC----CchHHHHHHHHHHHHH-HcCC-CEEEEcC
Confidence 458999999985 9999999999999984 3343 3455543
No 290
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=50.33 E-value=1.7e+02 Score=26.81 Aligned_cols=52 Identities=21% Similarity=0.168 Sum_probs=32.9
Q ss_pred cCHHHHHHHHhhHHHHHHHHhhcCCcEEEE----ecCCCC------CCHHHHHHHHHHHHHcCCC
Q 010562 427 ENVALVEAGCVNLARHIANTKAYGANVVVA----VNMFAT------DSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 427 enl~al~~G~~NL~kHIeni~~fGvpvVVA----IN~F~t------DT~~Ei~~v~~~~~~~g~~ 481 (507)
+.++..++.+..+ |+.+++.|..+|+. .+.|.. +..+=-+.+++.|++.|+.
T Consensus 87 ~~~~~~~~nl~~i---i~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 148 (198)
T cd01821 87 EPYTTYKEYLRRY---IAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVP 148 (198)
T ss_pred CcHHHHHHHHHHH---HHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCC
Confidence 3556666555555 55566778887775 223332 2334456889999999997
No 291
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=50.30 E-value=13 Score=38.81 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=31.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccc
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFN 139 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediN 139 (507)
...+|+ ||-= |-|.|||||+-=|..+| ++-+.... .|++|||-|-
T Consensus 80 ~~pfII--giaG-svavGKST~ar~L~~ll-~~~~~~~~-----------------------v~lvpmDGFh 124 (283)
T COG1072 80 QRPFII--GIAG-SVAVGKSTTARILQALL-SRWPESPK-----------------------VDLVTMDGFH 124 (283)
T ss_pred CCCEEE--Eecc-CccccHHHHHHHHHHHH-hhCCCCCc-----------------------eEEEeccccc
Confidence 344444 4432 45899999999998888 46555432 4999999873
No 292
>PRK00049 elongation factor Tu; Reviewed
Probab=50.22 E-value=43 Score=35.31 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.9
Q ss_pred hHHHHHHHHhhcCCcEE-EEecCCCC
Q 010562 438 NLARHIANTKAYGANVV-VAVNMFAT 462 (507)
Q Consensus 438 NL~kHIeni~~fGvpvV-VAIN~F~t 462 (507)
...+|++.++.+|+|++ |++|+...
T Consensus 115 qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 115 QTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 45679999999999986 69999865
No 293
>PRK08084 DNA replication initiation factor; Provisional
Probab=50.21 E-value=19 Score=35.07 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=29.4
Q ss_pred hhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 58 SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 58 ~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
..+.+....+.+..++++| |.|.|||+...+++..+. ..|+++
T Consensus 34 ~~l~~~~~~~~~~~l~l~G----p~G~GKThLl~a~~~~~~-~~~~~v 76 (235)
T PRK08084 34 AALQNALRQEHSGYIYLWS----REGAGRSHLLHAACAELS-QRGRAV 76 (235)
T ss_pred HHHHHHHhCCCCCeEEEEC----CCCCCHHHHHHHHHHHHH-hCCCeE
Confidence 3444443334455777776 789999999999998885 446554
No 294
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=50.20 E-value=17 Score=41.47 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lG 102 (507)
..++++||| ++|.||||+...+.+++. ..|
T Consensus 337 ~~~~~iitG----gpGTGKTt~l~~i~~~~~-~~~ 366 (720)
T TIGR01448 337 QHKVVILTG----GPGTGKTTITRAIIELAE-ELG 366 (720)
T ss_pred hCCeEEEEC----CCCCCHHHHHHHHHHHHH-HcC
Confidence 356899987 689999999999999994 666
No 295
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=49.95 E-value=25 Score=35.40 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=26.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHh-hHHHHHhhhcCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTV-GLCQALGAFLDK 103 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttI-GL~qaL~~~lGk 103 (507)
|.|.++.||+. .|+||||..- .|..++.++++.
T Consensus 19 p~g~~~~vtGv----SGsGKStL~~~~l~~~~~~~~~~ 52 (261)
T cd03271 19 PLGVLTCVTGV----SGSGKSSLINDTLYPALARRLHL 52 (261)
T ss_pred cCCcEEEEECC----CCCchHHHHHHHHHHHHHHHhcc
Confidence 78999999996 6999999985 667777544443
No 296
>PRK06217 hypothetical protein; Validated
Probab=49.93 E-value=11 Score=34.89 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=18.2
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|+|+|. -|.||||++.-|++.|
T Consensus 4 I~i~G~----~GsGKSTla~~L~~~l 25 (183)
T PRK06217 4 IHITGA----SGSGTTTLGAALAERL 25 (183)
T ss_pred EEEECC----CCCCHHHHHHHHHHHc
Confidence 777774 5999999998888776
No 297
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=49.91 E-value=36 Score=36.39 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=58.6
Q ss_pred eehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHh--hHHHHHHHHhhcCCcEEEE-ecCCCCCCHHHHHHHHHHHHH
Q 010562 401 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVVVA-VNMFATDSKAELNAVRNAAMA 477 (507)
Q Consensus 401 TvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~--NL~kHIeni~~fGvpvVVA-IN~F~tDT~~Ei~~v~~~~~~ 477 (507)
.++.||-. |+..+..|- +...++.++.+.||.. ...+-++.++++|+.+.+- |=-||.+|.++++...+++.+
T Consensus 289 ~l~~l~~a-G~~~v~iGi---ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~ 364 (472)
T TIGR03471 289 TLKVMKEN-GLRLLLVGY---ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHc-CCCEEEEcC---CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35666654 555666662 5666778888888864 6677889999999986543 336899999999999999999
Q ss_pred cCCC
Q 010562 478 AGAF 481 (507)
Q Consensus 478 ~g~~ 481 (507)
.+..
T Consensus 365 l~~~ 368 (472)
T TIGR03471 365 LNPH 368 (472)
T ss_pred cCCC
Confidence 8875
No 298
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=49.87 E-value=8.2 Score=34.42 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.0
Q ss_pred CCCCCcchhHhhHHHHH
Q 010562 81 PLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL 97 (507)
|.|.||||++.-|++.|
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 67999999998888777
No 299
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=49.79 E-value=61 Score=27.55 Aligned_cols=44 Identities=16% Similarity=0.079 Sum_probs=26.9
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcccccccCcC
Q 010562 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT-~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
.++|+||+.|+..--. ....+.+.++++..+.. +..++ ++-|+|
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~g 149 (162)
T cd04138 105 DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETS--AKTRQG 149 (162)
T ss_pred CCCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEec--CCCCCC
Confidence 5899999999965422 22334566777777775 44333 344444
No 300
>PRK13948 shikimate kinase; Provisional
Probab=49.62 E-value=14 Score=35.18 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=22.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+..|+++|+ -|.||||++.-|++.|+
T Consensus 8 ~~~~~I~LiG~----~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGF----MGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 45677888886 59999999988888773
No 301
>PF13173 AAA_14: AAA domain
Probab=49.57 E-value=16 Score=31.77 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|+|.++++| |.|.||||+.-=+++-+
T Consensus 1 n~~~~~l~G----~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTG----PRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEEC----CCCCCHHHHHHHHHHHh
Confidence 478899998 68999999988777776
No 302
>PRK06526 transposase; Provisional
Probab=49.37 E-value=10 Score=37.89 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=40.2
Q ss_pred HHHHHHHcCCCCc-chhcccCc-eeeecchhhhhccC---CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 31 ISEIAQELNLKPN-HYDLYGKY-KAKVLLSVLDELEG---SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 31 I~~iA~~lGi~~~-~le~YG~~-kAKi~l~~l~~~~~---~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
++..=++.+++.. .++-|=.. .-+++...+..+.. -..++-|+++| |.|.|||+++.+|+..+. +.|+++
T Consensus 55 ~~~~lk~a~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~fi~~~~nlll~G----p~GtGKThLa~al~~~a~-~~g~~v 129 (254)
T PRK06526 55 GEGRIRAARFPARKSLEEFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFLG----PPGTGKTHLAIGLGIRAC-QAGHRV 129 (254)
T ss_pred HHHHHHhCCCCCCCChhhccCccCCCcchHHHHHHhcCchhhcCceEEEEe----CCCCchHHHHHHHHHHHH-HCCCch
Confidence 4444456677754 44444211 11233322322211 12345577777 569999999999999884 668765
No 303
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=49.35 E-value=38 Score=29.69 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=21.3
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 010562 441 RHIANTKAYGANVVVAVNMFATDSKAELNAV 471 (507)
Q Consensus 441 kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v 471 (507)
.+++.+++.+.|+++++|+...-++++++..
T Consensus 105 ~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~ 135 (189)
T cd00881 105 EHLRIAREGGLPIIVAINKIDRVGEEDLEEV 135 (189)
T ss_pred HHHHHHHHCCCCeEEEEECCCCcchhcHHHH
Confidence 3455566689999999999765554554433
No 304
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=49.33 E-value=39 Score=32.16 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCC-CCHHHHH----HHHHHHHHcCC
Q 010562 438 NLARHIANTKAYGAN-VVVAVNMFAT-DSKAELN----AVRNAAMAAGA 480 (507)
Q Consensus 438 NL~kHIeni~~fGvp-vVVAIN~F~t-DT~~Ei~----~v~~~~~~~g~ 480 (507)
..++|+..++++|+| +||++|+..- +.++-.+ .+++..++.|.
T Consensus 105 ~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~ 153 (195)
T cd01884 105 QTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF 153 (195)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 456788999999998 7799999764 3232233 34555555554
No 305
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=49.19 E-value=44 Score=32.75 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 440 ~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
.++++.++.+|+|+++++|+.......--+.+.++.+..|..
T Consensus 106 ~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~ 147 (268)
T cd04170 106 EKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRP 147 (268)
T ss_pred HHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCC
Confidence 345556778999999999998755432222333333445664
No 306
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=49.01 E-value=24 Score=36.94 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=29.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
++-|||+| |-|.||||+.-.|.+.+.......-++++-+|.
T Consensus 144 ~~nilI~G----~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~ 184 (323)
T PRK13833 144 RLNIVISG----GTGSGKTTLANAVIAEIVASAPEDRLVILEDTA 184 (323)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHhcCCCCceEEEecCCc
Confidence 56789998 459999999999998873222344566766554
No 307
>PLN02772 guanylate kinase
Probab=48.87 E-value=14 Score=39.93 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=44.0
Q ss_pred cccCceeeecchhhhhccC--CC-CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc
Q 010562 47 LYGKYKAKVLLSVLDELEG--SA-DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (507)
Q Consensus 47 ~YG~~kAKi~l~~l~~~~~--~~-~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~F 118 (507)
||.+-.-|+--+-.-+... .+ ..|+|+++| |.|.||||+.--|.+-+-..++.....+=|.|-.|.+-
T Consensus 110 ~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsG----PSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~d 180 (398)
T PLN02772 110 PFVREQKKLLGTEVVAWSKGVRGNAEKPIVISG----PSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKD 180 (398)
T ss_pred HHHHhhcccccceeeecccCCCCCCCcEEEEEC----CCCCCHHHHHHHHhhhccccccccccccCCCCcccccC
Confidence 6666555554332222221 22 578999998 88999999887776655324565666678888887553
No 308
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=48.71 E-value=12 Score=35.41 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=36.0
Q ss_pred chhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010562 44 HYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 44 ~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~ 117 (507)
.+.-|..|+-.+++++ ..| ++.++| |-|+||||+--.|+-.+ +......+|.++.|-+
T Consensus 5 ~~~~fr~~~~~~~l~~-------~~g-~~~i~G----~nGsGKStll~al~~l~----~~~~~~~~~~~~~~~~ 62 (197)
T cd03278 5 ELKGFKSFADKTTIPF-------PPG-LTAIVG----PNGSGKSNIIDAIRWVL----GEQSAKSLRGEKMSDV 62 (197)
T ss_pred EEeCCcCcCCCeeeec-------CCC-cEEEEC----CCCCCHHHHHHHHHHHh----ccccchhhcccCHHHH
Confidence 4566777755566652 236 777777 56999999887665433 3223334566666554
No 309
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=48.68 E-value=18 Score=35.57 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=24.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHH-HHHhhhcCCcEEEEecCCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~-qaL~~~lGk~a~~~lRePS 113 (507)
-++|.++| |+|.|||.+++..+ +.+. .-..+-++..|.+.
T Consensus 19 ~~~v~~~G----~AGTGKT~LA~a~Al~~v~-~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 19 NDLVIVNG----PAGTGKTFLALAAALELVK-EGEYDKIIITRPPV 59 (205)
T ss_dssp -SEEEEE------TTSSTTHHHHHHHHHHHH-TTS-SEEEEEE-S-
T ss_pred CCeEEEEC----CCCCcHHHHHHHHHHHHHH-hCCCcEEEEEecCC
Confidence 45788877 79999999998776 3442 32346677888654
No 310
>PRK04328 hypothetical protein; Provisional
Probab=48.55 E-value=25 Score=34.58 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHH-HHHhhhcCCcE-EEEecC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQ 111 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~-qaL~~~lGk~a-~~~lRe 111 (507)
|.|..+||+| |.|.||||.+.=+. .++ +-|.++ ++.+.|
T Consensus 21 p~gs~ili~G----~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee 61 (249)
T PRK04328 21 PERNVVLLSG----GPGTGKSIFSQQFLWNGL--QMGEPGVYVALEE 61 (249)
T ss_pred cCCcEEEEEc----CCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeC
Confidence 6799999999 88999999987644 455 347775 444444
No 311
>PRK14737 gmk guanylate kinase; Provisional
Probab=48.41 E-value=17 Score=34.39 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=32.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
..+++|+++| |.|.||||+.--|.+-+- .+....-.+=|.|-.|-
T Consensus 2 ~~~~~ivl~G----psG~GK~tl~~~l~~~~~-~~~~~v~~TTR~~r~gE 46 (186)
T PRK14737 2 ASPKLFIISS----VAGGGKSTIIQALLEEHP-DFLFSISCTTRAPRPGD 46 (186)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHhcCC-ccccccCccCCCCCCCC
Confidence 3589999998 789999999888876552 33333345567776663
No 312
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=48.30 E-value=36 Score=33.66 Aligned_cols=120 Identities=17% Similarity=0.093 Sum_probs=73.3
Q ss_pred HHHHHHHHhcCCCCeEEeeccccccccccccccc-ccccCCC---CcceEEEEeee--hHHHhcCCCCCccCCCCCcccc
Q 010562 351 VADKIALKLVGPGGFVVTEAGFGADIGAEKFMNI-KCRYSGL---TPQCAVIVATI--RALKMHGGGPQVVAGKPLDHAY 424 (507)
Q Consensus 351 iAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dI-KCR~sgl---~PdavVlVaTv--RALK~HGG~~~~~~g~pL~~~l 424 (507)
|+-||-.||.|.. |.+-+.-...++..+=|+=| -|+.+.. .|+++-+|+++ ...+|.+..... +-
T Consensus 50 i~lkinaKlGG~n-~~~~~~~~~~~~~~~miIGidv~h~~~~~~~~~sv~g~~~s~~~~~~~~~~~~~~~--------~~ 120 (302)
T PF02171_consen 50 IALKINAKLGGIN-PWLLDSPPSIDLKNTMIIGIDVSHPSPGSDKNPSVVGFVASFDSDGSKYFSSVRFQ--------DS 120 (302)
T ss_dssp HHHHHHHHTTTBS-EEECSCSSGSSESEEEEEEEEEEEESSTCTCSCEEEEEEEEESTTTCEEEEEEEEE--------CT
T ss_pred HHHHHHHhCCCee-eeecccccccccCceEEEEEEEEecCcccCCcceeeEEEEeccCccccccceeEEe--------cc
Confidence 5677888898754 56666665333311112111 2444444 49999999999 777888766443 23
Q ss_pred cccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecC-------CCCCCHHHHHHHHHHHHHcC
Q 010562 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-------FATDSKAELNAVRNAAMAAG 479 (507)
Q Consensus 425 ~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~-------F~tDT~~Ei~~v~~~~~~~g 479 (507)
.+|.++.|+.-+.+..++-++..+...|-=|.|=| |..=-++|++.+++.|++.+
T Consensus 121 ~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~ 182 (302)
T PF02171_consen 121 GQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELG 182 (302)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcc
Confidence 46777777776666666555544432454444433 22223669999999998876
No 313
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=48.29 E-value=12 Score=40.54 Aligned_cols=29 Identities=41% Similarity=0.532 Sum_probs=24.7
Q ss_pred cCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 77 itPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
|+=|..+.|||++|.||++.| ++.|.++.
T Consensus 3 I~GT~t~vGKT~v~~~L~~~l-~~~G~~v~ 31 (475)
T TIGR00313 3 VVGTTSSAGKSTLTAGLCRIL-ARRGYRVA 31 (475)
T ss_pred EeeCCCCCCHHHHHHHHHHHH-HhCCCeEE
Confidence 445778999999999999999 58898865
No 314
>PRK09183 transposase/IS protein; Provisional
Probab=48.11 E-value=22 Score=35.40 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=27.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.|.-|+++| |.|.||||++.+|+..+. .-|+++.
T Consensus 100 ~~~~~v~l~G----p~GtGKThLa~al~~~a~-~~G~~v~ 134 (259)
T PRK09183 100 ERNENIVLLG----PSGVGKTHLAIALGYEAV-RAGIKVR 134 (259)
T ss_pred hcCCeEEEEe----CCCCCHHHHHHHHHHHHH-HcCCeEE
Confidence 4567788777 669999999999988874 5676653
No 315
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=47.98 E-value=11 Score=36.86 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHhhhcC
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~~~lG 102 (507)
|+++| |.|.||||++..++..|. .+|
T Consensus 45 vll~G----ppGtGKTtlA~~ia~~l~-~~~ 70 (261)
T TIGR02881 45 MIFKG----NPGTGKTTVARILGKLFK-EMN 70 (261)
T ss_pred EEEEc----CCCCCHHHHHHHHHHHHH-hcC
Confidence 55555 789999999999999883 554
No 316
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=47.91 E-value=65 Score=33.67 Aligned_cols=83 Identities=23% Similarity=0.295 Sum_probs=45.1
Q ss_pred HHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccceeeeccCCCCCCcceecceeEeehhHHHHHHHh
Q 010562 197 RLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLAL 276 (507)
Q Consensus 197 rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G~~re~gFdITvASEiMAIL~L 276 (507)
.|++.|.+-..+..++.+|..++.+ +|-...+.+..---+ +.-|=+++|.|| ++|++.-.|++
T Consensus 94 ~W~~~g~p~~~~~~~s~~~~~~y~r-~i~l~~~g~~~q~~l--~~~~VlvvG~GG--------------~Gs~ia~~La~ 156 (376)
T PRK08762 94 AWKDAGLPLERPRLLTDEQDERYSR-HLRLPEVGEEGQRRL--LEARVLLIGAGG--------------LGSPAALYLAA 156 (376)
T ss_pred HHHhcCCccccccCCCHHHHHHHHH-hcchhhcCHHHHHHH--hcCcEEEECCCH--------------HHHHHHHHHHH
Confidence 3445555556677788888777664 232112211100001 222446667764 46777777766
Q ss_pred cCCHHHHHHHhcCcEEeecCCCCceeecccc
Q 010562 277 TTSLADMRERLGKMVIGNSKAGDPITADDLG 307 (507)
Q Consensus 277 a~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~ 307 (507)
+- +|+|++ .|+.-|...+|+
T Consensus 157 ~G--------vg~i~l---vD~d~v~~sNl~ 176 (376)
T PRK08762 157 AG--------VGTLGI---VDHDVVDRSNLQ 176 (376)
T ss_pred cC--------CCeEEE---EeCCEecchhhc
Confidence 54 567766 356666666665
No 317
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=47.89 E-value=39 Score=35.69 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcCCc-EEEEecCCCCC
Q 010562 439 LARHIANTKAYGAN-VVVAVNMFATD 463 (507)
Q Consensus 439 L~kHIeni~~fGvp-vVVAIN~F~tD 463 (507)
-.+|+..++.+|+| +||++|+....
T Consensus 121 t~~~~~~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 121 TRRHSYIASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred cHHHHHHHHHcCCCcEEEEEEecccc
Confidence 34688888888886 78899997653
No 318
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=47.87 E-value=69 Score=30.66 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=46.8
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 432 VEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 432 l~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
.+..+.++.++++.+++.|..|.+..-....=+++++..+.+.+.++|+..+.+++..
T Consensus 103 ~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~ 160 (237)
T PF00682_consen 103 REEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTV 160 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCcc
Confidence 4566779999999999999999887766666678899888888899999877777654
No 319
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=47.86 E-value=14 Score=38.47 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=30.1
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lR 110 (507)
+|-|= |=|==|.|||++++-|++.| ...|.+..+.-|
T Consensus 51 vIsVG--Ni~vGGtGKTP~v~~L~~~l-~~~g~~~~ilsR 87 (325)
T PRK00652 51 VIVVG--NITVGGTGKTPVVIALAEQL-QARGLKPGVVSR 87 (325)
T ss_pred EEEEc--CeeCCCCChHHHHHHHHHHH-HHCCCeEEEECC
Confidence 55553 44567999999999999999 578999888877
No 320
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=47.79 E-value=20 Score=37.55 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=42.5
Q ss_pred HHHHHHHcCCCCcchhcccCce----eeecc--hhhhhc-c--CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhc
Q 010562 31 ISEIAQELNLKPNHYDLYGKYK----AKVLL--SVLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 101 (507)
Q Consensus 31 I~~iA~~lGi~~~~le~YG~~k----AKi~l--~~l~~~-~--~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~l 101 (507)
+.+|.+++|=. .+-..|... .+++. .-||.+ . .=|.|.+++|.+ |.|.||||++.=++... .+.
T Consensus 10 ~~~~~~~~g~~--~~~~~~~~~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G----~~GsGKTtLaL~~~~~~-~~~ 82 (321)
T TIGR02012 10 LAQIEKQFGKG--SIMRLGEKSVMDVETISTGSLSLDLALGVGGLPRGRIIEIYG----PESSGKTTLALHAIAEA-QKA 82 (321)
T ss_pred HHHHHHHcCcc--eeEECcccccccCceecCCCHHHHHHhcCCCCcCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHc
Confidence 56677776642 334444321 12332 234443 2 357899999999 56999999988877666 355
Q ss_pred CCcEE
Q 010562 102 DKKVV 106 (507)
Q Consensus 102 Gk~a~ 106 (507)
|.+++
T Consensus 83 g~~v~ 87 (321)
T TIGR02012 83 GGTAA 87 (321)
T ss_pred CCcEE
Confidence 66554
No 321
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=47.71 E-value=21 Score=36.34 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.5
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
.|-|++- -|.||||+..-|...| .+.| + ++.+--
T Consensus 3 ~i~i~G~----~gSGKTTLi~~Li~~L-~~~G-~-V~~IKh 36 (274)
T PRK14493 3 VLSIVGY----KATGKTTLVERLVDRL-SGRG-R-VGTVKH 36 (274)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHH-HhCC-C-EEEEEE
Confidence 4555553 3999999999999999 4779 5 555554
No 322
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=47.70 E-value=14 Score=35.61 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=21.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.+++|+|+|+ -|.||||.+--|++-+
T Consensus 2 ~~~~i~i~G~----~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGI----PGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHhc
Confidence 4679999996 4999999997777655
No 323
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=47.39 E-value=52 Score=28.49 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=26.4
Q ss_pred hHHHHHHHH---hhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCC
Q 010562 438 NLARHIANT---KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAF 481 (507)
Q Consensus 438 NL~kHIeni---~~fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~ 481 (507)
++..-++.+ +..++|++|+.|+..--...+ .+.+.+++++.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 138 (161)
T cd04113 90 ALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLL 138 (161)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE
Confidence 344444444 346899999999974322222 23456677778865
No 324
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=47.38 E-value=80 Score=30.52 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=44.3
Q ss_pred cCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecC--C-CCCCH-------HHHHHHHHHHHHcCCCeEEEccc
Q 010562 427 ENVALVEAGCVNLARHIANTKAYGANVVVAVNM--F-ATDSK-------AELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 427 enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~--F-~tDT~-------~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
++.+.-++.+.++++.|+..+.+|.++|+.--. | ..+++ +.++.+.+.+++.|+. .++-++
T Consensus 84 ~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~ 154 (284)
T PRK13210 84 RDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVM-LAVEIM 154 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCE-EEEEec
Confidence 455677888999999999999999999985211 1 12333 2367778888899996 666554
No 325
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=47.36 E-value=35 Score=37.48 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=33.0
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcc
Q 010562 437 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 437 ~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
.|++.=.+-+++||+|+||-- .| -+++..+.+.|.++|+.+.++--
T Consensus 188 dN~~~m~~la~~yg~pvVv~~----~d-l~~L~~lv~~~~~~GI~dIILDP 233 (450)
T PRK04165 188 ENYEEMAELAKEYNCPLVVKA----PN-LEELKELVEKLQAAGIKDLVLDP 233 (450)
T ss_pred chHHHHHHHHHHcCCcEEEEc----hh-HHHHHHHHHHHHHcCCCcEEECC
Confidence 456666666788999999832 23 56777788888999997665543
No 326
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.34 E-value=1.5e+02 Score=26.89 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=32.0
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCC-------HHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 437 VNLARHIANTKAYGANVVVAVNMFATDS-------KAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 437 ~NL~kHIeni~~fGvpvVVAIN~F~tDT-------~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
.||+..++.+++.|.+||+. --.+... .+-.+.+++.|++.++.-+-+.+.|
T Consensus 95 ~~l~~lv~~~~~~~~~vili-~~pp~~~~~~~~~~~~~~~~~~~~a~~~~~~~id~~~~~ 153 (200)
T cd01829 95 QRIDELLNVARAKGVPVIWV-GLPAMRSPKLSADMVYLNSLYREEVAKAGGEFVDVWDGF 153 (200)
T ss_pred HHHHHHHHHHHhCCCcEEEE-cCCCCCChhHhHHHHHHHHHHHHHHHHcCCEEEEhhHhh
Confidence 57777788888888887664 3223222 2345667888888887533333333
No 327
>PRK07952 DNA replication protein DnaC; Validated
Probab=47.34 E-value=16 Score=36.60 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=24.9
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+-++++| |.|.|||+++.+++..|. +.|++++
T Consensus 100 ~~~~l~G----~~GtGKThLa~aia~~l~-~~g~~v~ 131 (244)
T PRK07952 100 ASFIFSG----KPGTGKNHLAAAICNELL-LRGKSVL 131 (244)
T ss_pred ceEEEEC----CCCCCHHHHHHHHHHHHH-hcCCeEE
Confidence 3566665 569999999999999994 6676654
No 328
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=47.34 E-value=22 Score=33.52 Aligned_cols=42 Identities=29% Similarity=0.547 Sum_probs=29.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHH-HHHhhhcCCcE-EEEecCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQPS 113 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~-qaL~~~lGk~a-~~~lRePS 113 (507)
|.|..+||+| |.|.|||+.+.-++ .++ ...|.++ ++++-||.
T Consensus 17 p~gs~~li~G----~~GsGKT~l~~q~l~~~~-~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 17 PKGSVVLISG----PPGSGKTTLALQFLYNGL-KNFGEKVLYVSFEEPP 60 (226)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHHH-HHHT--EEEEESSS-H
T ss_pred CCCcEEEEEe----CCCCCcHHHHHHHHHHhh-hhcCCcEEEEEecCCH
Confidence 6799999999 67999999998855 455 2337776 55666664
No 329
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=47.14 E-value=75 Score=26.60 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=27.1
Q ss_pred HHHHHHhhcCCcEEEEecCCCCC-CHHHHHHHHHHHHHcC
Q 010562 441 RHIANTKAYGANVVVAVNMFATD-SKAELNAVRNAAMAAG 479 (507)
Q Consensus 441 kHIeni~~fGvpvVVAIN~F~tD-T~~Ei~~v~~~~~~~g 479 (507)
+.++.++.++.|+++++|+.... ++++++.+.+...+..
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 141 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELG 141 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhcc
Confidence 34455666799999999998765 5666666665555443
No 330
>PRK09354 recA recombinase A; Provisional
Probab=47.07 E-value=21 Score=37.95 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=44.5
Q ss_pred CHHHHHHHcCCCCcchhcccCc----eeeecch--hhhhc-c--CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhh
Q 010562 30 HISEIAQELNLKPNHYDLYGKY----KAKVLLS--VLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (507)
Q Consensus 30 ~I~~iA~~lGi~~~~le~YG~~----kAKi~l~--~l~~~-~--~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~ 100 (507)
.|.+|-+++|=. .+-..|.. ..+|+.. -||.+ . .=|.|.+++|.+ |.|.||||++.=++... .+
T Consensus 14 ~~~~i~~~~g~~--~~~~~~~~~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G----~~GsGKTtLal~~~~~~-~~ 86 (349)
T PRK09354 14 ALKQIEKQFGKG--SIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYG----PESSGKTTLALHAIAEA-QK 86 (349)
T ss_pred HHHHHHHHhCCC--CceEcccccccCCceecCCcHHHHHHhcCCCCcCCeEEEEEC----CCCCCHHHHHHHHHHHH-HH
Confidence 467787777743 23333431 2234432 34442 2 347899999999 78999999998776655 35
Q ss_pred cCCcEEE
Q 010562 101 LDKKVVT 107 (507)
Q Consensus 101 lGk~a~~ 107 (507)
.|.+++-
T Consensus 87 ~G~~~~y 93 (349)
T PRK09354 87 AGGTAAF 93 (349)
T ss_pred cCCcEEE
Confidence 5655543
No 331
>PRK08939 primosomal protein DnaI; Reviewed
Probab=47.04 E-value=27 Score=35.89 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCC----cchhcccCc-----eee-ecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhh
Q 010562 31 ISEIAQELNLKP----NHYDLYGKY-----KAK-VLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (507)
Q Consensus 31 I~~iA~~lGi~~----~~le~YG~~-----kAK-i~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~ 100 (507)
+...-+..+++. ..++-|... .|. .-.+++++....+.+|=++++| |.|.|||..+.+++..|. .
T Consensus 108 ~~~~i~~a~~p~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G----~~G~GKThLa~Aia~~l~-~ 182 (306)
T PRK08939 108 IKKRIQSIYMPKDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYG----DFGVGKSYLLAAIANELA-K 182 (306)
T ss_pred HHHHHHHcCCCHhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEEC----CCCCCHHHHHHHHHHHHH-H
Confidence 455556777775 234444321 111 1134455443333567777777 569999999999999995 6
Q ss_pred cCCcEE
Q 010562 101 LDKKVV 106 (507)
Q Consensus 101 lGk~a~ 106 (507)
.|+++.
T Consensus 183 ~g~~v~ 188 (306)
T PRK08939 183 KGVSST 188 (306)
T ss_pred cCCCEE
Confidence 787754
No 332
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.99 E-value=22 Score=37.54 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=27.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
+.|.|-|||.+ ||||||-=|++.| ...|+++..
T Consensus 113 ~~~vI~VTGT~------GKTTTt~ll~~iL-~~~g~~~~~ 145 (460)
T PRK01390 113 DAPFIAITGTN------GKSTTTALIAHIL-REAGRDVQM 145 (460)
T ss_pred CCCEEEEeCCC------cHHHHHHHHHHHH-HhcCCCeEE
Confidence 46899999986 9999999999999 588887643
No 333
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=46.79 E-value=15 Score=37.15 Aligned_cols=42 Identities=31% Similarity=0.304 Sum_probs=24.9
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC---Ccccccc
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG---PTFGIKG 122 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlG---P~FGiKG 122 (507)
.=|.||||+|.-|+-++.+..|++.++.==.++|| -.||+++
T Consensus 11 KGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~ 55 (262)
T COG0455 11 KGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVES 55 (262)
T ss_pred CCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCC
Confidence 56999999999996555344455533332334444 2355544
No 334
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=46.76 E-value=18 Score=35.39 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=26.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
+.|.+++.| +-|-||||.++|++... ...|.++.+
T Consensus 21 ~~g~v~v~~-----g~GkGKtt~a~g~a~ra-~g~G~~V~i 55 (191)
T PRK05986 21 EKGLLIVHT-----GNGKGKSTAAFGMALRA-VGHGKKVGV 55 (191)
T ss_pred cCCeEEEEC-----CCCCChHHHHHHHHHHH-HHCCCeEEE
Confidence 457777765 57999999999998776 356887554
No 335
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.63 E-value=23 Score=37.10 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=28.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
+.|.|-|||.+ ||||||-=|++.| ...|+++..+
T Consensus 108 ~~~~I~VTGT~------GKTTTt~ml~~iL-~~~g~~~~~~ 141 (459)
T PRK02705 108 HIPWVGITGTN------GKTTVTALLAHIL-QAAGLNAPAC 141 (459)
T ss_pred CCCEEEEeCCC------chHHHHHHHHHHH-HHcCCCeEEe
Confidence 46789999875 9999999999999 5889876553
No 336
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=46.45 E-value=24 Score=34.38 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=32.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE-EEEecCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQPS 113 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a-~~~lRePS 113 (507)
|.|+.+||+| +.|.|||+.+.=..-... .-|.+. .++++|+.
T Consensus 21 p~g~~~lI~G----~pGsGKT~f~~qfl~~~~-~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITG----PPGTGKTIFALQFLYEGA-REGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEc----CCCCcHHHHHHHHHHHHH-hcCCcEEEEEecCCH
Confidence 7899999999 579999999987766663 457765 46677643
No 337
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=46.05 E-value=16 Score=38.40 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=28.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
..++-|||+| |-|.||||+.-.|.+.+. . .. -++++-+|
T Consensus 160 ~~~~nilI~G----~tGSGKTTll~aLl~~i~-~-~~-rivtiEd~ 198 (344)
T PRK13851 160 VGRLTMLLCG----PTGSGKTTMSKTLISAIP-P-QE-RLITIEDT 198 (344)
T ss_pred HcCCeEEEEC----CCCccHHHHHHHHHcccC-C-CC-CEEEECCC
Confidence 3578899999 559999999999988874 2 22 35555554
No 338
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.89 E-value=21 Score=38.32 Aligned_cols=31 Identities=35% Similarity=0.296 Sum_probs=26.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
.++|-|||.+ ||||||-=|++-| ...|+++.
T Consensus 115 ~~~IaITGTn------GKTTTt~ll~~iL-~~~g~~~~ 145 (468)
T PRK04690 115 PGTVCVTGTK------GKSTTTALLAHLL-RAAGHRTA 145 (468)
T ss_pred CCEEEEeCCC------CHHHHHHHHHHHH-HhcCCcEE
Confidence 4799999986 9999999999999 57887654
No 339
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=45.83 E-value=19 Score=32.33 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++|+|.|. -|.||||++--|++.+
T Consensus 3 ~~ii~i~G~----~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG----PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHHh
Confidence 457888885 6999999998888766
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=45.83 E-value=13 Score=43.90 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=29.6
Q ss_pred chhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 57 LSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 57 l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
..+++++....+.|++|++| |+|-||||...-+..
T Consensus 25 ~rL~~~L~~~~~~RL~li~A----PAGfGKttl~aq~~~ 59 (894)
T COG2909 25 PRLLDRLRRANDYRLILISA----PAGFGKTTLLAQWRE 59 (894)
T ss_pred HHHHHHHhcCCCceEEEEeC----CCCCcHHHHHHHHHH
Confidence 45677887778999999987 999999999887765
No 341
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=45.79 E-value=98 Score=27.68 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=45.9
Q ss_pred cCHHHHHHHHhhHHHHHHHHhhcCCcEEEEe----cCCCCCCHH--------HHHHHHHHHHHcCCCeEEEcccccccC
Q 010562 427 ENVALVEAGCVNLARHIANTKAYGANVVVAV----NMFATDSKA--------ELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 427 enl~al~~G~~NL~kHIeni~~fGvpvVVAI----N~F~tDT~~--------Ei~~v~~~~~~~g~~~~~~~~~wa~GG 493 (507)
++-+ -++.+..+.+.|+-++.+|++.|+.- +....++.+ -++.+.+.|++.|+. +.+-++.....
T Consensus 62 ~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~ 138 (213)
T PF01261_consen 62 ANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR-IALENHPGPFS 138 (213)
T ss_dssp SSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE-EEEE-SSSSSS
T ss_pred cchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce-EEEecccCccc
Confidence 3434 78888999999999999999998877 345555544 345666677788986 66666554443
No 342
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=45.75 E-value=14 Score=36.26 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=20.2
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++|+++| |.|.||||.+--|++.+
T Consensus 3 ~liil~G----~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVG----VPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEc----CCCCCHHHHHHHHHHHC
Confidence 5788887 46999999999988776
No 343
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=45.67 E-value=29 Score=32.09 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=24.3
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
.++||| .+|.||||+-.-|.+ . ..-|.+..+..-|
T Consensus 2 v~ii~G----fLGsGKTTli~~ll~-~-~~~~~~~~vI~ne 36 (178)
T PF02492_consen 2 VIIITG----FLGSGKTTLINHLLK-R-NRQGERVAVIVNE 36 (178)
T ss_dssp EEEEEE----STTSSHHHHHHHHHH-H-HTTTS-EEEEECS
T ss_pred EEEEEc----CCCCCHHHHHHHHHH-H-hcCCceeEEEEcc
Confidence 466777 489999999888877 3 3567776665554
No 344
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=45.67 E-value=9.9 Score=33.34 Aligned_cols=24 Identities=46% Similarity=0.606 Sum_probs=18.9
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+|+++| |.|.||||++.-|++.++
T Consensus 1 li~l~G----~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMG----VSGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEc----CCCCCHHHHHHHHHhhcC
Confidence 466666 469999999999988763
No 345
>PHA02096 hypothetical protein
Probab=45.43 E-value=16 Score=32.34 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=22.3
Q ss_pred cCHHHHHHHHhhHHHHHHHHhh--cCCcEEEEecCCC
Q 010562 427 ENVALVEAGCVNLARHIANTKA--YGANVVVAVNMFA 461 (507)
Q Consensus 427 enl~al~~G~~NL~kHIeni~~--fGvpvVVAIN~F~ 461 (507)
-|+..-++.++...+--.-+++ ||.|.+|+||+=+
T Consensus 40 ~~~~~ak~~i~eylkgt~vikkrlfg~ptiv~inkps 76 (103)
T PHA02096 40 VSLKNAKKSIEEYLKGTTVIKKRLFGPPTIVSVNKPS 76 (103)
T ss_pred hHHHHHHHHHHHHhcccchhhhhhcCCCeEEEecCch
Confidence 3444445555544444444554 9999999999853
No 346
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=45.31 E-value=16 Score=37.79 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.++|+|+| |.|.||||+++-|++.++
T Consensus 4 ~~~i~i~G----ptgsGKt~la~~la~~~~ 29 (307)
T PRK00091 4 PKVIVIVG----PTASGKTALAIELAKRLN 29 (307)
T ss_pred ceEEEEEC----CCCcCHHHHHHHHHHhCC
Confidence 47888888 569999999999999884
No 347
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=45.28 E-value=86 Score=30.61 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=44.4
Q ss_pred ccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEE-ecCCCCCCHHH-----HHHHHHH---HHHcCCCeEEEcccccc
Q 010562 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVA-VNMFATDSKAE-----LNAVRNA---AMAAGAFDAVVCSHHAH 491 (507)
Q Consensus 424 l~~enl~al~~G~~NL~kHIeni~~fGvpvVVA-IN~F~tDT~~E-----i~~v~~~---~~~~g~~~~~~~~~wa~ 491 (507)
+..++-+.-++.+..+++.|+-++.+|.+.||. ......++.++ ++.+++. +++.|+. +.+-+++..
T Consensus 72 ~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~-l~lEn~~~~ 147 (279)
T cd00019 72 LASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVV-IALETMAGQ 147 (279)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCE-EEEeCCCCC
Confidence 345666778999999999999999999998776 22222222222 2334444 4467886 777776644
No 348
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=45.12 E-value=71 Score=32.99 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=36.8
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010562 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 436 ~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~ 486 (507)
+....+.|++++++|++|.|..- ....+.+|++.+.+++.+.|+..+.+.
T Consensus 140 f~~~~~~i~~l~~~g~~v~i~~v-v~~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 140 FAKKLAVARLVKAHGYPLTLNAV-IHRHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred HHHHHHHHHHHHHCCCceEEEEE-eecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 44455567778888998766442 455678999999999999999855443
No 349
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=45.06 E-value=31 Score=35.98 Aligned_cols=66 Identities=21% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~H 147 (507)
.=.+|.|=.| |==|.|||-+++-|++.| ...|++..+.-| |-+|-..| -.-+|-|-. +-+-+||=-
T Consensus 34 ~vpVIsVGNl--tvGGTGKTP~v~~L~~~L-~~~G~~~~IlSR--------GYg~~~~~-~~~~v~~~~--~~~~~GDEp 99 (326)
T PF02606_consen 34 PVPVISVGNL--TVGGTGKTPLVIWLARLL-QARGYRPAILSR--------GYGRKSKG-EPILVSDGS--DAEEVGDEP 99 (326)
T ss_pred CCcEEEEccc--ccCCCCchHHHHHHHHHH-HhcCCceEEEcC--------CCCCCCCC-CeEEEeCCC--ChhhhcCHH
Confidence 3446666554 667999999999999999 578999998888 34333332 233444444 777788844
No 350
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=44.97 E-value=32 Score=36.74 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=30.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
--+||+.|+| |.|||||--=|+.-| ..-|++++++
T Consensus 139 p~Vil~vGVN----G~GKTTTIaKLA~~l-~~~g~~Vlla 173 (340)
T COG0552 139 PFVILFVGVN----GVGKTTTIAKLAKYL-KQQGKSVLLA 173 (340)
T ss_pred cEEEEEEecC----CCchHhHHHHHHHHH-HHCCCeEEEE
Confidence 5699999998 899999988899999 5889998875
No 351
>PRK13947 shikimate kinase; Provisional
Probab=44.92 E-value=12 Score=33.50 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=18.7
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|+++|+ .|.||||++.-|++.|+
T Consensus 4 I~l~G~----~GsGKst~a~~La~~lg 26 (171)
T PRK13947 4 IVLIGF----MGTGKTTVGKRVATTLS 26 (171)
T ss_pred EEEEcC----CCCCHHHHHHHHHHHhC
Confidence 666664 69999999999988884
No 352
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=44.90 E-value=18 Score=37.70 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=26.6
Q ss_pred chhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 57 LSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 57 l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+..+.+....+.--.|+++|. .|.||||++.-|+..|
T Consensus 80 y~~~~~i~~~~~p~iIlI~G~----sgsGKStlA~~La~~l 116 (301)
T PRK04220 80 YLLWRRIRKSKEPIIILIGGA----SGVGTSTIAFELASRL 116 (301)
T ss_pred HHHHHHHhcCCCCEEEEEECC----CCCCHHHHHHHHHHHh
Confidence 455555554344568888885 5999999888888766
No 353
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=44.79 E-value=68 Score=27.40 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=30.2
Q ss_pred hHHHHHHHHh-hcCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEc
Q 010562 438 NLARHIANTK-AYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 438 NL~kHIeni~-~fGvpvVVAIN~F~tDT--~~Ei~~v~~~~~~~g~~~~~~~ 486 (507)
++..++..++ .+++|+||++|+..... ..+.+..++++++.++. ++.+
T Consensus 92 ~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~ 142 (164)
T cd04139 92 EFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVET 142 (164)
T ss_pred HHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEe
Confidence 3444444443 36899999999987543 23455566777777775 4433
No 354
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=44.71 E-value=51 Score=33.14 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCC
Q 010562 440 ARHIANTKAYGANVVVAVNMFATD 463 (507)
Q Consensus 440 ~kHIeni~~fGvpvVVAIN~F~tD 463 (507)
.++++.++++|+|++|+||+....
T Consensus 106 ~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 106 ETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCC
Confidence 577888889999999999998754
No 355
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=44.64 E-value=22 Score=32.20 Aligned_cols=27 Identities=37% Similarity=0.650 Sum_probs=23.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.+++++| |.|.||||.+.-|+-++
T Consensus 30 ~~g~l~~i~g----~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 30 PRGELTLIAG----PPGSGKTTLALQLAAAL 56 (193)
T ss_dssp -TTSEEEEEE----CSTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 4588999998 67999999999998888
No 356
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=44.57 E-value=11 Score=37.26 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=38.0
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc-c--cccCCCCCCceeeecCcccccccchhhhHHHHHHhHH
Q 010562 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF-G--IKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLL 156 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~F-G--iKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLl 156 (507)
-|+|.|||.|...|+.+| |+..++-==.|++...+ + +||-|..|-+ .=+||||-- |.+.+++--..+
T Consensus 39 GpagtGKtetik~La~~l----G~~~~vfnc~~~~~~~~l~ril~G~~~~GaW---~cfdefnrl---~~~vLS~i~~~i 108 (231)
T PF12774_consen 39 GPAGTGKTETIKDLARAL----GRFVVVFNCSEQMDYQSLSRILKGLAQSGAW---LCFDEFNRL---SEEVLSVISQQI 108 (231)
T ss_dssp SSTTSSHHHHHHHHHHCT----T--EEEEETTSSS-HHHHHHHHHHHHHHT-E---EEEETCCCS---SHHHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHHh----CCeEEEecccccccHHHHHHHHHHHhhcCch---hhhhhhhhh---hHHHHHHHHHHH
Confidence 489999999999998877 55555544344444321 1 3455554443 345777742 334444444444
Q ss_pred HHH
Q 010562 157 AAA 159 (507)
Q Consensus 157 aA~ 159 (507)
.++
T Consensus 109 ~~i 111 (231)
T PF12774_consen 109 QSI 111 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 357
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=44.50 E-value=17 Score=40.99 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=27.3
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.+++|.| |.|.|||||.+.+...+ -..|++..+|
T Consensus 174 ~~~lI~G----pPGTGKT~t~~~ii~~~-~~~g~~VLv~ 207 (637)
T TIGR00376 174 DLFLIHG----PPGTGKTRTLVELIRQL-VKRGLRVLVT 207 (637)
T ss_pred CeEEEEc----CCCCCHHHHHHHHHHHH-HHcCCCEEEE
Confidence 5788887 78999999999998877 3668876555
No 358
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=44.41 E-value=19 Score=30.34 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=19.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+++.++|+| |.|.||||+..=+.+.+.
T Consensus 3 ~~~~~~i~G----~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 3 SQRILVISG----PPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ----EEEEE-----TTSSHHHHHHHHHHHHH
T ss_pred CCcccEEEc----CCCCCHHHHHHHHHHHhH
Confidence 467889988 679999999999988884
No 359
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=44.32 E-value=9.9 Score=36.86 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=13.6
Q ss_pred CCCCCcchhHhhHHHHH
Q 010562 81 PLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL 97 (507)
+-|.||||++..|+-=+
T Consensus 7 tiGCGKTTva~aL~~LF 23 (168)
T PF08303_consen 7 TIGCGKTTVALALSNLF 23 (168)
T ss_pred CCCcCHHHHHHHHHHHc
Confidence 35999999998886555
No 360
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=44.26 E-value=16 Score=33.84 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=19.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|++|+++| |-|.||||+.--|+.-+
T Consensus 2 g~~i~l~G----~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMG----PSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHhccC
Confidence 66788887 78999999887774433
No 361
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.08 E-value=26 Score=36.61 Aligned_cols=31 Identities=29% Similarity=0.171 Sum_probs=26.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
.+.|-|||.+ ||||||-=|++-| ...|+++.
T Consensus 105 ~~~I~VTGTn------GKTTTt~ll~~iL-~~~g~~~~ 135 (438)
T PRK03806 105 APIVAITGSN------GKSTVTTLVGEMA-KAAGWKVG 135 (438)
T ss_pred CCEEEEeCCC------CHHHHHHHHHHHH-HHcCCCEE
Confidence 4689899886 9999999999999 47888754
No 362
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=44.02 E-value=61 Score=38.78 Aligned_cols=83 Identities=20% Similarity=0.271 Sum_probs=60.1
Q ss_pred hHHHhcCCCCCccCCCCCcccccccCHHHHHHHH-----------------hhHHHHHHHHhhcCCcEEEEecCCCCCCH
Q 010562 403 RALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC-----------------VNLARHIANTKAYGANVVVAVNMFATDSK 465 (507)
Q Consensus 403 RALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~-----------------~NL~kHIeni~~fGvpvVVAIN~F~tDT~ 465 (507)
|.-|-+ |+....||- -+..||.|.-++-- -|=.+-.+-..+-|||||-.- |-+
T Consensus 74 ~iAk~~-gaDaIhPGY----GfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt-----~~~ 143 (1149)
T COG1038 74 RIAKRS-GADAIHPGY----GFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGT-----DGP 143 (1149)
T ss_pred HHHHHc-CCCeecCCc----ccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCC-----CCC
Confidence 444555 677788884 56678988766532 233444556677999999864 444
Q ss_pred HH-HHHHHHHHHHcCCCeEEEcccccccCcCc
Q 010562 466 AE-LNAVRNAAMAAGAFDAVVCSHHAHGGKGA 496 (507)
Q Consensus 466 ~E-i~~v~~~~~~~g~~~~~~~~~wa~GG~Ga 496 (507)
.| ++.+++++++.|.+ +.+--.|.-||.|.
T Consensus 144 ~~~~ee~~~fa~~~gyP-vmiKA~~GGGGRGM 174 (1149)
T COG1038 144 IETIEEALEFAEEYGYP-VMIKAAAGGGGRGM 174 (1149)
T ss_pred cccHHHHHHHHHhcCCc-EEEEEccCCCccce
Confidence 44 77788999999998 88999999999985
No 363
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=43.98 E-value=37 Score=39.63 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=18.8
Q ss_pred HHHHHHhhcCCcEEEEecCCCCC
Q 010562 441 RHIANTKAYGANVVVAVNMFATD 463 (507)
Q Consensus 441 kHIeni~~fGvpvVVAIN~F~tD 463 (507)
.|+..++.+++|+||++|+..-.
T Consensus 380 e~i~~a~~~~vPiIVviNKiDl~ 402 (787)
T PRK05306 380 EAINHAKAAGVPIIVAINKIDKP 402 (787)
T ss_pred HHHHHHHhcCCcEEEEEECcccc
Confidence 46677888999999999997653
No 364
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.82 E-value=23 Score=37.98 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=27.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
.|+|-|||.+ ||||||-=|++.| ...|+++.
T Consensus 121 ~~vIaVTGTn------GKTTTt~ml~~iL-~~~g~~~~ 151 (473)
T PRK00141 121 RTWLAVTGTN------GKTTTTAMLAAMM-QEGGFAAQ 151 (473)
T ss_pred CCEEEEeCCC------cHHHHHHHHHHHH-HhcCCcEE
Confidence 3799999986 9999999999999 58898865
No 365
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=43.63 E-value=66 Score=27.57 Aligned_cols=33 Identities=9% Similarity=-0.004 Sum_probs=23.8
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCC
Q 010562 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAF 481 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~ 481 (507)
.++|+||++|+-.-... ...+.+.+++++.+..
T Consensus 104 ~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 138 (164)
T smart00175 104 PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP 138 (164)
T ss_pred CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe
Confidence 47999999998654332 2345677888888876
No 366
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=43.58 E-value=81 Score=32.51 Aligned_cols=50 Identities=14% Similarity=-0.000 Sum_probs=39.9
Q ss_pred hhHHHHHHHHhhcCCcEEE--EecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010562 437 VNLARHIANTKAYGANVVV--AVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 437 ~NL~kHIeni~~fGvpvVV--AIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~ 486 (507)
+...+-|+++++.|+++.+ .+.+-..|+.++++.+.+++.+.|+....+.
T Consensus 214 ~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~ 265 (321)
T TIGR03822 214 AEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLH 265 (321)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEE
Confidence 3556678888899999866 5777778999999999999999999644443
No 367
>PRK08118 topology modulation protein; Reviewed
Probab=43.41 E-value=13 Score=34.52 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=18.3
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|+|.| |-|.||||.+.-|++-++
T Consensus 4 I~I~G----~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 4 IILIG----SGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHhC
Confidence 66666 569999998888887773
No 368
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=43.13 E-value=76 Score=27.57 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=22.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 450 GvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
+.|+||++|+-..-...+++...++.+..+..
T Consensus 113 ~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01897 113 NKPVIVVLNKIDLLTFEDLSEIEEEEELEGEE 144 (168)
T ss_pred cCCeEEEEEccccCchhhHHHHHHhhhhccCc
Confidence 89999999997765566665555665544444
No 369
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=43.06 E-value=1.2e+02 Score=29.67 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=41.2
Q ss_pred cCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecC---CCCCCHHH-------HHHHHHHHHHcCCCeEEEcc
Q 010562 427 ENVALVEAGCVNLARHIANTKAYGANVVVAVNM---FATDSKAE-------LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 427 enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~---F~tDT~~E-------i~~v~~~~~~~g~~~~~~~~ 487 (507)
.|.+.-++.+..++++|+-++.+|.|+|+.-.. +..++++. +..+.++|++.|+. ..+-.
T Consensus 84 ~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~-l~lE~ 153 (279)
T TIGR00542 84 KDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVT-LAVEI 153 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEee
Confidence 455667889999999999999999998864221 12233432 34455677788996 66554
No 370
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=43.03 E-value=24 Score=33.90 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++.++|.++|+ .|-||||++.-+++-.
T Consensus 17 ~~~~~v~I~G~----~G~GKT~LA~~~~~~~ 43 (287)
T PF00931_consen 17 NEVRVVAIVGM----GGIGKTTLARQVARDL 43 (287)
T ss_dssp TSSEEEEEEES----TTSSHHHHHHHHHCHH
T ss_pred CCeEEEEEEcC----CcCCcceeeeeccccc
Confidence 56889999997 6999999998888773
No 371
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.99 E-value=28 Score=36.29 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=26.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
.+.|-|||.+ ||||||-=|++.| ...|+.+.
T Consensus 108 ~~~I~VTGT~------GKTTTt~ll~~iL-~~~g~~~~ 138 (447)
T PRK02472 108 APIIGITGSN------GKTTTTTLIGEML-KAGGQHAL 138 (447)
T ss_pred CCEEEEeCCC------chHHHHHHHHHHH-HHCCCCeE
Confidence 5789999886 9999999999999 57887764
No 372
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=42.91 E-value=82 Score=31.67 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=41.7
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 436 ~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
+.++.++|+.+|+.|..|.+.+=.-..-+++++..+.+.+.+.|+..+.+++..
T Consensus 108 ~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~ 161 (266)
T cd07944 108 FDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSF 161 (266)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 678899999999999988776554333457777777777788999877777654
No 373
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=42.80 E-value=24 Score=39.40 Aligned_cols=40 Identities=33% Similarity=0.411 Sum_probs=29.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
+.|..|++||. -|.||||++-.|++.|+..-|. .+..|+.
T Consensus 390 ~~g~~Ivl~Gl----~GSGKSTia~~La~~L~~~~g~-~~~~lD~ 429 (568)
T PRK05537 390 KQGFTVFFTGL----SGAGKSTIAKALMVKLMEMRGR-PVTLLDG 429 (568)
T ss_pred CCCeEEEEECC----CCChHHHHHHHHHHHhhhccCc-eEEEeCC
Confidence 45889999986 5999999999999999522343 2444443
No 374
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=42.60 E-value=1.1e+02 Score=30.21 Aligned_cols=57 Identities=19% Similarity=0.044 Sum_probs=43.3
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 433 EAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 433 ~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
+..+.++...++.+++.|..|.+.+-....-+++++..+.+.+.++|+..+.+++..
T Consensus 106 ~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 162 (259)
T cd07939 106 AWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTV 162 (259)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 445778889999999999987766654444457777777777788999888888754
No 375
>PRK12289 GTPase RsgA; Reviewed
Probab=42.58 E-value=72 Score=33.70 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=37.2
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcCc
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGA 496 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga 496 (507)
.|.+.+..+...|+|+|+++|+-.-.++++++...+..+..|.. ++..+ +.-|+|-
T Consensus 108 ~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~-v~~iS--A~tg~GI 163 (352)
T PRK12289 108 QLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQ-PLFIS--VETGIGL 163 (352)
T ss_pred HHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCe-EEEEE--cCCCCCH
Confidence 34455555567899999999998766677776666666778885 44333 3334553
No 376
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=42.47 E-value=21 Score=39.04 Aligned_cols=28 Identities=32% Similarity=0.687 Sum_probs=25.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-.||-||+.+ |.|.|||-.++|++|-|+
T Consensus 63 ~aGrgiLi~G----ppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 63 MAGRGILIVG----PPGTGKTALAMGIARELG 90 (450)
T ss_pred ccccEEEEEC----CCCCcHHHHHHHHHHHhC
Confidence 4699999987 889999999999999885
No 377
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=42.43 E-value=1.2e+02 Score=26.75 Aligned_cols=59 Identities=7% Similarity=0.114 Sum_probs=38.9
Q ss_pred hhHHHHHHHHhhcC-CcEEEEec-CCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcC
Q 010562 437 VNLARHIANTKAYG-ANVVVAVN-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 437 ~NL~kHIeni~~fG-vpvVVAIN-~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
.+..+-|+.+++.| +++.+-+= -++.++.+++..+.+++++.|+..+.+.......|..
T Consensus 136 ~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~ 196 (216)
T smart00729 136 EDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTP 196 (216)
T ss_pred HHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCCh
Confidence 35555566677777 55544332 2456899999999999999999755554444444443
No 378
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=42.40 E-value=13 Score=31.97 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=17.1
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+|+|.| |.|.||||.+--|.+.+
T Consensus 1 lii~~G----~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCG----PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEE----STTSSHHHHHHHHHHHS
T ss_pred CEEEEC----CCCCCHHHHHHHHHHHC
Confidence 466666 57999999987776555
No 379
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.39 E-value=30 Score=36.23 Aligned_cols=80 Identities=21% Similarity=0.136 Sum_probs=50.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC-CccccccCCCCCCceeeecCcccccccchhh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG-PTFGIKGGAAGGGYSQVIPMDEFNLHLTGDI 146 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlG-P~FGiKGGAaGGGysQViPmediNLHfTGD~ 146 (507)
+.+.|-|||-+ ||||||-=|++.| ...|+.+..+= ..| |.++..+. ..|. |+=|..+.++++=.+
T Consensus 101 ~~~~I~ITGT~------GKTTTt~ml~~iL-~~~g~~~~~~G---niG~p~l~~~~~---~~~~-V~E~~s~~~~~~~~~ 166 (418)
T PRK00683 101 RYPSLGITGST------GKTTTILFLEHLL-KRLGIPAFAMG---NIGIPILDGMQQ---PGVR-VVEISSFQLADQEKS 166 (418)
T ss_pred CCCEEEEECCC------ChHHHHHHHHHHH-HHcCCCeEEEC---CcCHHHHHHhhc---CCEE-EEEechhhhCcCccc
Confidence 35689999875 9999999999999 57887554321 144 44554432 3444 777777766653323
Q ss_pred hH---HHHHHhHHHHHHH
Q 010562 147 HA---ITAANNLLAAAID 161 (507)
Q Consensus 147 HA---ItaAnNLlaA~iD 161 (507)
++ |..=.|+=.+=+|
T Consensus 167 ~~~~~iavitNi~~dHld 184 (418)
T PRK00683 167 YPVLSGGMILNISDNHLD 184 (418)
T ss_pred CCCccEEEEecCChhHhc
Confidence 33 4444566555555
No 380
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=42.33 E-value=19 Score=39.96 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=23.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.-.+|+|.|.+ |.||||++-.|++.|+
T Consensus 254 ~p~vil~~G~~----G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 254 RPLHVLIGGVS----GVGKSVLASALAYRLG 280 (475)
T ss_pred CCeEEEEECCC----CCCHHHHHHHHHHHcC
Confidence 46799999864 9999999999998884
No 381
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=42.28 E-value=31 Score=35.39 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=72.1
Q ss_pred HHHHHh-cCCCCeEEeecccccccccccccccccccCCCC-c--ceEEEEeeehHHHhcCCCCCccCCCCCcccccc---
Q 010562 354 KIALKL-VGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLT-P--QCAVIVATIRALKMHGGGPQVVAGKPLDHAYLN--- 426 (507)
Q Consensus 354 k~ALkL-ag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~-P--davVlVaTvRALK~HGG~~~~~~g~pL~~~l~~--- 426 (507)
++--|. +|. ||+||-.-|.++. +++|++ +||..|+. | =.+.-+.+.+.+++..-.+ |-.+|+++.+
T Consensus 168 ~Lk~K~~aGA-~~~iTQ~~Fd~~~-~~~f~~-~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~----Gv~vP~~l~~~l~ 240 (296)
T PRK09432 168 NLKRKVDAGA-NRAITQFFFDVES-YLRFRD-RCVSAGIDVEIVPGILPVSNFKQLKKFADMT----NVRIPAWMAKMFD 240 (296)
T ss_pred HHHHHHHcCC-CeeecccccchHH-HHHHHH-HHHHcCCCCCEEeeccccCCHHHHHHHHHcc----CCCCCHHHHHHHH
Confidence 555566 454 6999999999986 888888 79999965 3 1123356677776664433 4445554422
Q ss_pred ---cCHH-HHHHHHhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCC
Q 010562 427 ---ENVA-LVEAGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGA 480 (507)
Q Consensus 427 ---enl~-al~~G~~NL~kHIeni~~fGvpvV--VAIN~F~tDT~~Ei~~v~~~~~~~g~ 480 (507)
++.+ ..+.|++=-...|+.+...|+|=| ..+|+. +.+.+.++..|.
T Consensus 241 ~~~d~~~~~~~~Gi~~a~e~i~~L~~~gv~GvH~yt~n~~--------~~~~~il~~l~l 292 (296)
T PRK09432 241 GLDDDAETRKLVGASIAMDMVKILSREGVKDFHFYTLNRA--------ELTYAICHTLGV 292 (296)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEecCCCh--------HHHHHHHHHhCC
Confidence 3333 344688877888888888888843 345554 455666666654
No 382
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=42.27 E-value=19 Score=34.33 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=20.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
...++|+| |.|.||||+..-+...+
T Consensus 43 ~~~~~l~G----~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITG----EVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEc----CCCCCHHHHHHHHHHhc
Confidence 45778887 67999999999887776
No 383
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.12 E-value=71 Score=34.18 Aligned_cols=92 Identities=11% Similarity=0.045 Sum_probs=61.0
Q ss_pred eehHHHhcC-CCCCccCCCCCcccccccCHHHHHHHHh--hHHHHHHHHhhcCCcEEEE---ecCCCCCCHHHHHHHHHH
Q 010562 401 TIRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVVVA---VNMFATDSKAELNAVRNA 474 (507)
Q Consensus 401 TvRALK~HG-G~~~~~~g~pL~~~l~~enl~al~~G~~--NL~kHIeni~~fGvpvVVA---IN~F~tDT~~Ei~~v~~~ 474 (507)
.+++|+-+| |......|- +....+-+..+.++.. ...+=|+.+++.|..+.+. |--||.+|+++++...++
T Consensus 236 ll~~l~~~~~g~~~l~igv---QSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~ 312 (440)
T PRK14334 236 VIAAMAETPAVCEYIHLPV---QSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSL 312 (440)
T ss_pred HHHHHHhcCcCCCeEEecc---ccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHH
Confidence 467777664 566665552 3444555666776654 3667788888887665443 446999999999999999
Q ss_pred HHHcCCCeEEEcccccccCcC
Q 010562 475 AMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 475 ~~~~g~~~~~~~~~wa~GG~G 495 (507)
+++.+...+.+..--...|--
T Consensus 313 i~~l~~~~i~~f~ysp~pGT~ 333 (440)
T PRK14334 313 YDEVGYDSAYMFIYSPRPGTP 333 (440)
T ss_pred HHhcCCCEeeeeEeeCCCCCh
Confidence 999998744443322334433
No 384
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=42.12 E-value=15 Score=36.98 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=23.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk 103 (507)
+.=||++| |.|.||||++..+++.+. .+|.
T Consensus 58 ~~~vll~G----~pGTGKT~lA~~ia~~l~-~~g~ 87 (284)
T TIGR02880 58 TLHMSFTG----NPGTGKTTVALRMAQILH-RLGY 87 (284)
T ss_pred CceEEEEc----CCCCCHHHHHHHHHHHHH-HcCC
Confidence 33466666 689999999999999994 6664
No 385
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=42.02 E-value=80 Score=27.84 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=26.6
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 449 YGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
.+.|+++++|+..--.+++++...+++++.+..
T Consensus 41 ~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ 73 (141)
T cd01857 41 PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIV 73 (141)
T ss_pred CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCe
Confidence 478999999998776677777777888877764
No 386
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=41.86 E-value=84 Score=26.54 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=22.8
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCC
Q 010562 443 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGA 480 (507)
Q Consensus 443 Ieni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~ 480 (507)
.+-++++++|+|+++|+......++. .+...+.+.
T Consensus 98 ~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~ 132 (157)
T cd01894 98 AKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGF 132 (157)
T ss_pred HHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCC
Confidence 34455678999999999866554443 333445666
No 387
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=41.85 E-value=1e+02 Score=31.50 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=32.2
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcC
Q 010562 454 VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 454 VVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
|=+|=-..-=|++|+...++.|.++|+..+=-|+.|..||.-
T Consensus 128 lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT 169 (228)
T COG0274 128 LKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFSAGGAT 169 (228)
T ss_pred EEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCC
Confidence 334445566678999999999999999866677889977764
No 388
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=41.65 E-value=34 Score=28.05 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=27.9
Q ss_pred chhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 44 HYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 44 ~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+|.-||.|.. .++++ .++|+..++|+ |-|.||||+-=.+.=+|
T Consensus 5 ~L~Nw~~f~~-~~~~~------~~~g~~tli~G----~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 5 QLVNWGSFDG-ETIDF------DPRGDVTLITG----PNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEeccCccCC-eEEee------cCCCcEEEEEC----CCCCCHHHHHHHHHHHH
Confidence 3556666666 22221 25678888888 56999999876665554
No 389
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=41.61 E-value=36 Score=34.80 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=28.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhc-CCcEEEEecCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCLRQP 112 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~l-Gk~a~~~lReP 112 (507)
.++-|+|+| |-|+||||+.-.|.+.+. .. ....++++=+|
T Consensus 131 ~~~~ilI~G----~tGSGKTTll~al~~~i~-~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 131 ARKNILVVG----GTGSGKTTLANALLAEIA-KNDPTDRVVIIEDT 171 (299)
T ss_pred cCCeEEEEC----CCCCCHHHHHHHHHHHhh-ccCCCceEEEECCc
Confidence 356889998 459999999999988873 32 13346666554
No 390
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=41.41 E-value=1.6e+02 Score=26.19 Aligned_cols=52 Identities=25% Similarity=0.247 Sum_probs=31.8
Q ss_pred ccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCC-H----------HH-HHHHHHHHHHcCCC
Q 010562 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDS-K----------AE-LNAVRNAAMAAGAF 481 (507)
Q Consensus 426 ~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT-~----------~E-i~~v~~~~~~~g~~ 481 (507)
..+.+.+++.+..+.+++. ..+.+||+ +.-++.+. . ++ -+.+++.|++.|+.
T Consensus 84 ~~~~~~~~~~~~~~i~~i~---~~~~~vil-~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~v~ 147 (185)
T cd01832 84 GTDPDTYRADLEEAVRRLR---AAGARVVV-FTIPDPAVLEPFRRRVRARLAAYNAVIRAVAARYGAV 147 (185)
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCCEEEE-ecCCCccccchhHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 3456777776666655554 66776555 66555411 1 22 25578889999886
No 391
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=41.34 E-value=91 Score=32.63 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=42.2
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
++.+||+.+|+.|..|++.+=.-..-+++++..+.+.+.+.|+..+.+++..
T Consensus 116 ~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 167 (337)
T PRK08195 116 VSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSA 167 (337)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 6899999999999988886654445578888888888889999877777754
No 392
>PRK08760 replicative DNA helicase; Provisional
Probab=41.33 E-value=1.2e+02 Score=33.10 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=29.9
Q ss_pred hhhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 58 SVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 58 ~~l~~~~-~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
.-|+++- .-..|.+|+|+|- -|-||||++.-++.....+-|++
T Consensus 217 ~~LD~~t~G~~~G~LivIaar----Pg~GKTafal~iA~~~a~~~g~~ 260 (476)
T PRK08760 217 NDFDAMTAGLQPTDLIILAAR----PAMGKTTFALNIAEYAAIKSKKG 260 (476)
T ss_pred HHHHHHhcCCCCCceEEEEeC----CCCChhHHHHHHHHHHHHhcCCc
Confidence 4455542 3367999999995 48999999999887663233544
No 393
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=41.24 E-value=1.6e+02 Score=33.15 Aligned_cols=86 Identities=14% Similarity=0.206 Sum_probs=55.6
Q ss_pred CeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHH
Q 010562 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHI 443 (507)
Q Consensus 364 dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHI 443 (507)
||+|=|+|-|--+-+-.++ .+|+++||. +|. .+-++.|-..++...+|=
T Consensus 159 D~aVlEvGlgGr~DaTnvi--------~~p~v~vIT-nIg----------------------~DH~~~LG~Tle~IA~~K 207 (530)
T PLN02881 159 DVAILEVGLGGRLDATNVV--------QKPVVCGIT-SLG----------------------YDHMEILGDTLGKIAGEK 207 (530)
T ss_pred CEEEEEecCCCCchhhhcc--------CCCCEEEEc-ccc----------------------HHHHHhhcCCHHHHHHHH
Confidence 9999999987655443321 157765543 332 123344444466777777
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010562 444 ANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 444 eni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~ 486 (507)
..+-+-|+|+|.+- . .++-.+.+++.|++.|+. ..+.
T Consensus 208 agI~k~g~p~vt~~----q-~~ea~~vl~~~A~e~~a~-l~~v 244 (530)
T PLN02881 208 AGIFKPGVPAFTVP----Q-PDEAMRVLEERASELGVP-LQVV 244 (530)
T ss_pred HHHHhcCCCEEEeC----C-ChHHHHHHHHHHHHhCCc-EEEe
Confidence 77778899998863 2 345568889999999997 4443
No 394
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.90 E-value=1.3e+02 Score=32.13 Aligned_cols=131 Identities=13% Similarity=0.096 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhcCCCCeEEeeccc---ccccc-ccccccc-----------ccccCCCCcceEEEEeeehHHHhcC-CCC
Q 010562 349 SIVADKIALKLVGPGGFVVTEAGF---GADIG-AEKFMNI-----------KCRYSGLTPQCAVIVATIRALKMHG-GGP 412 (507)
Q Consensus 349 SviAtk~ALkLag~~dyVVTEAGF---GaDlG-aEKF~dI-----------KCR~sgl~PdavVlVaTvRALK~HG-G~~ 412 (507)
.|++.=-.|.-.|...+++|-.=| |.|++ .++|.++ .-|.+-..|+.+- =-.++.|+-++ +.+
T Consensus 157 ~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~-~ell~~l~~~~~~~~ 235 (418)
T PRK14336 157 EIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDIS-QKLIDAMAHLPKVCR 235 (418)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcC-HHHHHHHHhcCccCC
Confidence 455553444434555667775544 44653 2455542 2344455565431 12345565543 466
Q ss_pred CccCCCCCcccccccCHHHHHHH--HhhHHHHHHHHhhc--CCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCCeE
Q 010562 413 QVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAY--GANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDA 483 (507)
Q Consensus 413 ~~~~g~pL~~~l~~enl~al~~G--~~NL~kHIeni~~f--GvpvV-VAIN~F~tDT~~Ei~~v~~~~~~~g~~~~ 483 (507)
....|- +...++-|+++.+| ...+.+-|+.+++. |+.+. =.|--||.+|+++++...+++++.+...+
T Consensus 236 ~l~lgl---QSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~~ 308 (418)
T PRK14336 236 SLSLPV---QAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMADIGYDAI 308 (418)
T ss_pred ceecCC---CcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEE
Confidence 655552 44456678888887 45777788888887 77543 24667999999999999999999887643
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=40.89 E-value=73 Score=32.13 Aligned_cols=44 Identities=20% Similarity=0.112 Sum_probs=30.6
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
.+.+++..++..++|+|+++|+-.-.++.+......+..+.|..
T Consensus 97 ~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~ 140 (287)
T cd01854 97 LLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYP 140 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCe
Confidence 56777777788899999999997754444433334445567775
No 396
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=40.70 E-value=17 Score=28.92 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=15.2
Q ss_pred CCCCCcchhHhhHHHHH
Q 010562 81 PLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL 97 (507)
+.|.||||.+--|.+.|
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998887
No 397
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=40.66 E-value=40 Score=35.80 Aligned_cols=45 Identities=31% Similarity=0.406 Sum_probs=32.7
Q ss_pred hhhhhcc--CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 58 SVLDELE--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 58 ~~l~~~~--~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
.-||++- .-+.|.+++|+| |-|.||||+..-++..+. .-|.+++.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G----~pG~GKStLllq~a~~~a-~~g~~VlY 115 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGG----DPGIGKSTLLLQVAARLA-KRGGKVLY 115 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEe----CCCCCHHHHHHHHHHHHH-hcCCeEEE
Confidence 4455532 235689999999 679999999999998884 55555543
No 398
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=40.62 E-value=86 Score=28.02 Aligned_cols=40 Identities=8% Similarity=-0.014 Sum_probs=22.8
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 441 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 441 kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
+.|.+... ++|+||+.|+.............++++..+..
T Consensus 96 ~~i~~~~~-~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 135 (166)
T cd00877 96 RDLVRVCG-NIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQ 135 (166)
T ss_pred HHHHHhCC-CCcEEEEEEchhcccccCCHHHHHHHHHcCCE
Confidence 33443333 89999999998754222112334566655554
No 399
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=40.61 E-value=24 Score=39.06 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=23.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk 103 (507)
.|++|++.| |-|.|||||..-|+-.+-.+.|.
T Consensus 255 ~g~Vi~LvG----pnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 255 RGGVFALMG----PTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred CCcEEEEEC----CCCccHHHHHHHHHHHHHHhcCC
Confidence 477888877 45999999999999777323343
No 400
>PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. This entry includes YgbK from Escherichia coli, which is dependent upon FlhDC, the master regulator of the flagellar genes. The ygbK gene appears to be regulated by sigmaF [].; PDB: 3DQQ_B 1YZY_B.
Probab=40.57 E-value=17 Score=34.58 Aligned_cols=50 Identities=28% Similarity=0.431 Sum_probs=41.1
Q ss_pred CHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 428 nl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
+++.|++|-..|..+++++.+-|..+|| |..-|++.++.|-+.+.+.+..
T Consensus 10 ~l~~v~~g~~~l~~~l~~~~~~g~~ivV----~Da~t~~DL~~ia~a~~~~~~~ 59 (223)
T PF07005_consen 10 DLEDVRRGPEALSAALAALQAEGARIVV----FDAETDEDLDAIAEALLELGRR 59 (223)
T ss_dssp -HHHHCC-HHHHHHHHHHHHHTTECEEE----E-BSSCHHHHHHHHHCTT-S--
T ss_pred EHHHHhCcHHHHHHHHHHHHhCCCcEEE----EecCCHHHHHHHHHHHHhCCCc
Confidence 6788999999999999999999999999 7999999999999998877764
No 401
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=40.43 E-value=67 Score=34.10 Aligned_cols=82 Identities=7% Similarity=-0.035 Sum_probs=50.3
Q ss_pred ehHHHhcC-CCCCccCCCCCcccccccCHHHHHHHHh--hHHHHHHHHhhcCCcEE---EEecCCCCCCHHHHHHHHHHH
Q 010562 402 IRALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVV---VAVNMFATDSKAELNAVRNAA 475 (507)
Q Consensus 402 vRALK~HG-G~~~~~~g~pL~~~l~~enl~al~~G~~--NL~kHIeni~~fGvpvV---VAIN~F~tDT~~Ei~~v~~~~ 475 (507)
+.++|-+| +......| .+...++.++.+.|+.. ...+=|+.+++.+..+. -.|-=||.+|+++++...+++
T Consensus 235 l~~~~~~~~~~~~l~ig---lES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl 311 (430)
T TIGR01125 235 IDLMAEGPKVLPYLDIP---LQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFV 311 (430)
T ss_pred HHHHhhCCcccCceEeC---CCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHH
Confidence 45565554 34443333 13345566666666532 34455666666543322 245568999999999999999
Q ss_pred HHcCCCeEEEc
Q 010562 476 MAAGAFDAVVC 486 (507)
Q Consensus 476 ~~~g~~~~~~~ 486 (507)
++.+...+.+.
T Consensus 312 ~~~~~~~~~~~ 322 (430)
T TIGR01125 312 EEGQFDRLGAF 322 (430)
T ss_pred HhcCCCEEeee
Confidence 99998644333
No 402
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=40.40 E-value=31 Score=36.58 Aligned_cols=29 Identities=34% Similarity=0.312 Sum_probs=25.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
.|.|-|||.+ ||||||-=|.+.| ...|++
T Consensus 107 ~~~I~ITGTn------GKTTTt~ll~~iL-~~~g~~ 135 (461)
T PRK00421 107 RTSIAVAGTH------GKTTTTSLLAHVL-AEAGLD 135 (461)
T ss_pred CcEEEEECCC------CHHHHHHHHHHHH-HhcCCC
Confidence 3799999987 9999999999999 588864
No 403
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=40.35 E-value=27 Score=36.40 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
.++-|+|+| |-|.||||+.-.|.+.+. . .. .++++-+
T Consensus 159 ~~~nili~G----~tgSGKTTll~aL~~~ip-~-~~-ri~tiEd 195 (332)
T PRK13900 159 SKKNIIISG----GTSTGKTTFTNAALREIP-A-IE-RLITVED 195 (332)
T ss_pred cCCcEEEEC----CCCCCHHHHHHHHHhhCC-C-CC-eEEEecC
Confidence 477899998 459999999999988884 2 33 3566544
No 404
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=40.19 E-value=89 Score=26.89 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHhh-c--CCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCC
Q 010562 436 CVNLARHIANTKA-Y--GANVVVAVNMFATDSKA--ELNAVRNAAMAAGAF 481 (507)
Q Consensus 436 ~~NL~kHIeni~~-f--GvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~ 481 (507)
+.++...++.++. . ++|+++++|+-.-.... -.+.+...+++.++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 138 (161)
T cd01861 88 FDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM 138 (161)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCE
Confidence 4455555555543 4 49999999987662221 223345566666765
No 405
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=40.09 E-value=86 Score=32.08 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhcCC-cEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccC
Q 010562 438 NLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 438 NL~kHIeni~~fGv-pvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG 493 (507)
...+.|+.+++.|+ ++.+-.=-.+..+++|+..+.+++++.|+. +...+...-|+
T Consensus 141 ~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g~ 196 (329)
T PRK13361 141 RVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLGE 196 (329)
T ss_pred HHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCe-EEEEecccCCC
Confidence 44455566677888 554321123456789999999999999995 55555444443
No 406
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=40.00 E-value=14 Score=32.62 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=18.4
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+|.||+ +.|+||||++--|++.|+
T Consensus 2 iI~i~G----~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISG----PPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 355665 469999999988887763
No 407
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=39.94 E-value=58 Score=28.91 Aligned_cols=42 Identities=10% Similarity=-0.058 Sum_probs=26.9
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcccccc
Q 010562 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAH 491 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~~wa~ 491 (507)
-++|+|++.|+..-....+ .+...++++..... +..++....
T Consensus 108 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~ 151 (170)
T cd04115 108 NEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDP 151 (170)
T ss_pred CCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCC
Confidence 4699999999976543332 23455666766665 566666653
No 408
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=39.93 E-value=39 Score=36.44 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhc-CCcE-EEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKV-VTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~l-Gk~a-~~~lReP 112 (507)
|.|.++||+| +.|.||||.+.=++..- .+- |.++ ++.+-||
T Consensus 29 p~Gs~~li~G----~pGsGKT~l~~qf~~~~-~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 29 PKGRPTLVSG----TAGTGKTLFALQFLVNG-IKRFDEPGVFVTFEES 71 (509)
T ss_pred CCCcEEEEEe----CCCCCHHHHHHHHHHHH-HHhcCCCEEEEEccCC
No 409
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=39.91 E-value=56 Score=36.77 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=23.4
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC
Q 010562 442 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAG 479 (507)
Q Consensus 442 HIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g 479 (507)
|+..++.+++|+||++|+-.-.. ++.+.+.+.+.+.|
T Consensus 179 ~i~~~~~~~vPiIVviNKiDl~~-~~~e~v~~~L~~~g 215 (587)
T TIGR00487 179 AISHAKAANVPIIVAINKIDKPE-ANPDRVKQELSEYG 215 (587)
T ss_pred HHHHHHHcCCCEEEEEECccccc-CCHHHHHHHHHHhh
Confidence 56667789999999999975421 12233444444444
No 410
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=39.89 E-value=27 Score=36.36 Aligned_cols=31 Identities=35% Similarity=0.501 Sum_probs=25.2
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
|-|+||||-.-|+.|-| .++|.++.+.==.|
T Consensus 10 PPgSGKsTYc~g~~~fl-s~~gr~~~vVNLDP 40 (290)
T KOG1533|consen 10 PPGSGKSTYCNGMSQFL-SAIGRPVAVVNLDP 40 (290)
T ss_pred CCCCCccchhhhHHHHH-HHhCCceEEEecCC
Confidence 78999999999999999 59999765543333
No 411
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=39.86 E-value=33 Score=35.85 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=28.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
+.|-|+| +.|.||||+.--|...|. ..|.++ +++..
T Consensus 206 ~~~~~~g----~~~~GKtt~~~~l~~~l~-~~g~~v-~~iKh 241 (366)
T PRK14489 206 PLLGVVG----YSGTGKTTLLEKLIPELI-ARGYRI-GLIKH 241 (366)
T ss_pred cEEEEec----CCCCCHHHHHHHHHHHHH-HcCCEE-EEEEE
Confidence 5677776 579999999999999994 678774 66664
No 412
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=39.64 E-value=98 Score=30.70 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEcccccccCc
Q 010562 464 SKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 464 T~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~ 494 (507)
|++|+..+.+.|.+.|+..+..|+.|..||.
T Consensus 134 ~~e~i~~a~~~~~~agadfIKTsTG~~~~ga 164 (221)
T PRK00507 134 TDEEKVKACEIAKEAGADFVKTSTGFSTGGA 164 (221)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC
Confidence 5789999999999999987778899987774
No 413
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=39.62 E-value=28 Score=32.21 Aligned_cols=48 Identities=31% Similarity=0.454 Sum_probs=31.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FG 119 (507)
++++|+++| |.|.||+|..-=|.+-....++.-...+-|.|--|=+.|
T Consensus 1 ~~r~ivl~G----psg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g 48 (184)
T smart00072 1 DRRPIVLSG----PSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNG 48 (184)
T ss_pred CCcEEEEEC----CCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCC
Confidence 367888888 789999998777766642134555555567776554433
No 414
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=39.57 E-value=1e+02 Score=26.65 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=21.9
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCC
Q 010562 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAF 481 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~ 481 (507)
..+|+|++.|+..-..+. +.+.+.+++++.+..
T Consensus 104 ~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 138 (164)
T smart00173 104 DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCP 138 (164)
T ss_pred CCCCEEEEEECccccccceEcHHHHHHHHHHcCCE
Confidence 579999999997643222 234456677777765
No 415
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=39.38 E-value=25 Score=33.08 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=23.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+++=++++| |.|.|||.++++++..+. .-|+++.
T Consensus 46 ~~~~l~l~G----~~G~GKThLa~ai~~~~~-~~g~~v~ 79 (178)
T PF01695_consen 46 NGENLILYG----PPGTGKTHLAVAIANEAI-RKGYSVL 79 (178)
T ss_dssp C--EEEEEE----STTSSHHHHHHHHHHHHH-HTT--EE
T ss_pred cCeEEEEEh----hHhHHHHHHHHHHHHHhc-cCCccee
Confidence 355577777 459999999999999885 5677643
No 416
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.28 E-value=34 Score=34.51 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=30.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
.|+.||||+ +-+|-|| ++.++| +.-|-.+++.-|.|
T Consensus 6 aG~~vlvTg---agaGIG~-----~~v~~L-a~aGA~ViAvaR~~ 41 (245)
T KOG1207|consen 6 AGVIVLVTG---AGAGIGK-----EIVLSL-AKAGAQVIAVARNE 41 (245)
T ss_pred cceEEEeec---ccccccH-----HHHHHH-HhcCCEEEEEecCH
Confidence 599999999 7778787 677999 68999999999975
No 417
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=38.92 E-value=23 Score=34.93 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=21.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|+=||++| |.|.||||++.-|++.+
T Consensus 20 ~g~~vLL~G----~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 20 SGYPVHLRG----PAGTGKTTLAMHVARKR 45 (262)
T ss_pred cCCeEEEEc----CCCCCHHHHHHHHHHHh
Confidence 366678887 88999999998888766
No 418
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=38.82 E-value=15 Score=35.49 Aligned_cols=18 Identities=44% Similarity=0.593 Sum_probs=15.7
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010562 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
.+|.||||+...|++.|+
T Consensus 3 VsG~GKStvg~~lA~~lg 20 (161)
T COG3265 3 VSGSGKSTVGSALAERLG 20 (161)
T ss_pred CCccCHHHHHHHHHHHcC
Confidence 479999999999988885
No 419
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=38.74 E-value=37 Score=28.80 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.4
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010562 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|.|.||||++..++..+.
T Consensus 7 ~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 7 PTGSGKTTLALQLALNIA 24 (165)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 459999999999988874
No 420
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=38.68 E-value=29 Score=36.52 Aligned_cols=49 Identities=41% Similarity=0.386 Sum_probs=35.9
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccccC
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiKGG 123 (507)
.|+|++ =.=|-||||||+=|+-+| ++.|++..+- |=-||+==-||.+|-
T Consensus 49 iI~VlS---GKGGVGKSTvt~nla~~L-a~~g~~vglLD~Dl~GPSiP~m~g~e~~ 100 (300)
T KOG3022|consen 49 IILVLS---GKGGVGKSTVTVNLALAL-ASEGKKVGLLDADLCGPSIPRMMGLEGE 100 (300)
T ss_pred EEEEEe---CCCCCchhHHHHHHHHHH-hcCCCcEEEEeecccCCCchhhcCCCCc
Confidence 566654 467999999999999999 5788886532 455676555776654
No 421
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=38.66 E-value=25 Score=33.71 Aligned_cols=27 Identities=37% Similarity=0.342 Sum_probs=21.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
...+|.++| |-|.||||++--|++.|.
T Consensus 32 ~~~iigi~G----~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 32 RRTIVGIAG----PPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCEEEEEEC----CCCCCHHHHHHHHHHHhh
Confidence 345666666 569999999999988884
No 422
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=38.66 E-value=89 Score=26.84 Aligned_cols=33 Identities=12% Similarity=0.011 Sum_probs=20.6
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCC
Q 010562 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAF 481 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~ 481 (507)
.++|++|+.|+..--.+ ...+...+++++.+..
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 139 (163)
T cd04136 105 ENVPMVLVGNKCDLEDERVVSREEGQALARQWGCP 139 (163)
T ss_pred CCCCEEEEEECccccccceecHHHHHHHHHHcCCe
Confidence 58999999999753211 1233445566666754
No 423
>PRK12377 putative replication protein; Provisional
Probab=38.63 E-value=26 Score=35.16 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=27.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lR 110 (507)
.+-++++| |.|.|||+++.+++..|. .-|+++ .++.
T Consensus 101 ~~~l~l~G----~~GtGKThLa~AIa~~l~-~~g~~v-~~i~ 136 (248)
T PRK12377 101 CTNFVFSG----KPGTGKNHLAAAIGNRLL-AKGRSV-IVVT 136 (248)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCCe-EEEE
Confidence 34677777 459999999999999995 567764 4443
No 424
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=38.60 E-value=38 Score=31.67 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
-+.|+++.++| |.|.||||++.-++...
T Consensus 16 ~~~g~v~~I~G----~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 16 IPTGRITEIFG----EFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CcCCcEEEEeC----CCCCChhHHHHHHHHHh
Confidence 36799999999 78999999998776554
No 425
>PLN02199 shikimate kinase
Probab=38.39 E-value=21 Score=37.44 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=23.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..|+-|+++|+. |.||||+..=|++.|+
T Consensus 100 l~~~~I~LIG~~----GSGKSTVgr~LA~~Lg 127 (303)
T PLN02199 100 LNGRSMYLVGMM----GSGKTTVGKLMSKVLG 127 (303)
T ss_pred cCCCEEEEECCC----CCCHHHHHHHHHHHhC
Confidence 358889999986 9999999988888874
No 426
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=38.35 E-value=22 Score=35.66 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=21.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..+|.|+| +.|+||||++-.|.+-|+
T Consensus 8 ~iiIgIaG----~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 8 VIIIGIAG----GSGSGKTTVAKELSEQLG 33 (218)
T ss_pred eEEEEEeC----CCCCCHHHHHHHHHHHhC
Confidence 45777776 579999999999988884
No 427
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=38.34 E-value=30 Score=36.48 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=24.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk 103 (507)
.|.|-|||.+ ||||||-=|++.| ...|+
T Consensus 99 ~~~IaITGTn------GKTTTt~ll~~iL-~~~g~ 126 (448)
T TIGR01082 99 RHSIAVAGTH------GKTTTTAMIAVIL-KEAGL 126 (448)
T ss_pred CcEEEEECCC------ChHHHHHHHHHHH-HHcCC
Confidence 4799999986 9999999999999 58887
No 428
>PLN02200 adenylate kinase family protein
Probab=38.33 E-value=29 Score=34.14 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..++|+|+|. -|.||||.+--|++.++
T Consensus 42 ~~~ii~I~G~----PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGG----PGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 3468888884 59999999999988774
No 429
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=38.28 E-value=16 Score=33.50 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.2
Q ss_pred CCCCCcchhHhhHHHHHh
Q 010562 81 PLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~ 98 (507)
|.|.||||++-.|+.-|+
T Consensus 3 ~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 3 VSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCcHHHHHHHHHHHhC
Confidence 679999999988877773
No 430
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=38.24 E-value=1e+02 Score=26.68 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=28.6
Q ss_pred hHHHHHHHHhh-cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcc
Q 010562 438 NLARHIANTKA-YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 438 NL~kHIeni~~-fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
++.+.+.+... .++|+|++.|+.....+. +.+...++++..+.. ++.++
T Consensus 93 ~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 144 (163)
T cd04176 93 PMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCP-FMETS 144 (163)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCE-EEEec
Confidence 33344444432 689999999997653322 233456667767764 44443
No 431
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=38.22 E-value=1.1e+02 Score=32.07 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=40.3
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
+..+||+.+|+.|..|++.+=.-..-|++++..+.+.+.+.|+..+.+++..
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~ 166 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSA 166 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCC
Confidence 6789999999999998776643334467888888888889999877777654
No 432
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.91 E-value=20 Score=42.44 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
|.+|+|+|||+ .|+|||+++-..--|
T Consensus 20 P~~~l~v~TGv----SGSGKSSLafDtl~a 45 (924)
T TIGR00630 20 PRDKLVVITGL----SGSGKSSLAFDTIYA 45 (924)
T ss_pred CCCceEEEecC----CCCCchhHHHHHHHH
Confidence 88999999997 599999999775444
No 433
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.87 E-value=33 Score=36.45 Aligned_cols=31 Identities=29% Similarity=0.157 Sum_probs=26.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
.|+|-|||.+ |||||+-=|++.| ...|+++.
T Consensus 117 ~~vIaITGTn------GKTTT~~ll~~iL-~~~g~~~~ 147 (458)
T PRK01710 117 AKVFGVTGSD------GKTTTTTLIYEML-KEEGYKTW 147 (458)
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhCCCCEE
Confidence 5799999986 9999999999999 47788763
No 434
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=37.85 E-value=27 Score=32.74 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=20.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|++|+++|. .|.||||+.--|+.-+
T Consensus 2 ~ge~i~l~G~----sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGV----SGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHhc
Confidence 3788888884 6999999887776655
No 435
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=37.85 E-value=81 Score=27.92 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=36.0
Q ss_pred HhhHHHHHHHHhhc----CCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcccccccCcCcc
Q 010562 436 CVNLARHIANTKAY----GANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAV 497 (507)
Q Consensus 436 ~~NL~kHIeni~~f----GvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~ 497 (507)
+.++...++.++.+ +.|++++.|+..--.+. ..+.+.++|++.++. + .+..++=|+|-.
T Consensus 102 ~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~--~e~Sak~~~~v~ 166 (180)
T cd04127 102 FLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP-Y--FETSAATGTNVE 166 (180)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe-E--EEEeCCCCCCHH
Confidence 33444455555443 68999999987643221 224567888888875 3 355666666643
No 436
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=37.34 E-value=18 Score=35.51 Aligned_cols=27 Identities=41% Similarity=0.536 Sum_probs=18.2
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+|.||| || |.||||++-=|. .+|.+.+
T Consensus 2 ~I~ITG---TP-GvGKTT~~~~L~-----~lg~~~i 28 (180)
T COG1936 2 LIAITG---TP-GVGKTTVCKLLR-----ELGYKVI 28 (180)
T ss_pred eEEEeC---CC-CCchHHHHHHHH-----HhCCcee
Confidence 466665 44 999999987665 3455544
No 437
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=37.18 E-value=81 Score=33.85 Aligned_cols=79 Identities=6% Similarity=0.036 Sum_probs=47.2
Q ss_pred ccccCHHHHHHHH--hhHHHHHHHHhhc--CCcEEE-EecCCCCCCHHHHHHHHHHHHHcCCCeEEEcc-cccccCcCc-
Q 010562 424 YLNENVALVEAGC--VNLARHIANTKAY--GANVVV-AVNMFATDSKAELNAVRNAAMAAGAFDAVVCS-HHAHGGKGA- 496 (507)
Q Consensus 424 l~~enl~al~~G~--~NL~kHIeni~~f--GvpvVV-AIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~-~wa~GG~Ga- 496 (507)
.+++.++.+.++. +...+-|+.+++. |+.+.. .|==||.+|+++++...+++++.+...+.+.. ....|...+
T Consensus 266 gs~~vLk~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~ 345 (440)
T PRK14862 266 ASPRVLKRMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATAND 345 (440)
T ss_pred CCHHHHHhcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCCCCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhh
Confidence 3456666666543 3455566676664 333222 12247999999999999999999986443332 334454443
Q ss_pred -ccCCCC
Q 010562 497 -VSDLPP 502 (507)
Q Consensus 497 -~~~~~~ 502 (507)
.+++|+
T Consensus 346 ~~~~v~~ 352 (440)
T PRK14862 346 LPDQVPE 352 (440)
T ss_pred CCCCCCH
Confidence 235554
No 438
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=37.16 E-value=94 Score=33.19 Aligned_cols=81 Identities=9% Similarity=0.128 Sum_probs=59.0
Q ss_pred ehHHHhcCCCCCccCCCCCcccccccCHHHHHHHH--hhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHH
Q 010562 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC--VNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMA 477 (507)
Q Consensus 402 vRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~--~NL~kHIeni~~fGvpvV--VAIN~F~tDT~~Ei~~v~~~~~~ 477 (507)
+++||-. |+..+..|- +....+-+..+.++. +...+-|+.++++|+++| -.|=-+|.+|.++++.-.+++.+
T Consensus 144 l~~l~~~-G~~rvslGv---QS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~ 219 (430)
T PRK08208 144 LALLAAR-GVNRLSIGV---QSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALV 219 (430)
T ss_pred HHHHHHc-CCCEEEEec---ccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 4667665 566666763 445556667777764 356677888999999975 34557899999999999999999
Q ss_pred cCCCeEEEc
Q 010562 478 AGAFDAVVC 486 (507)
Q Consensus 478 ~g~~~~~~~ 486 (507)
.++..+.+.
T Consensus 220 l~~~~is~y 228 (430)
T PRK08208 220 YRPEELFLY 228 (430)
T ss_pred CCCCEEEEc
Confidence 998744433
No 439
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=37.04 E-value=23 Score=37.56 Aligned_cols=21 Identities=52% Similarity=0.691 Sum_probs=16.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTV 91 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttI 91 (507)
++|.+++.-| |.|+||||+-.
T Consensus 27 ~~Gef~vllG----PSGcGKSTlLr 47 (338)
T COG3839 27 EDGEFVVLLG----PSGCGKSTLLR 47 (338)
T ss_pred cCCCEEEEEC----CCCCCHHHHHH
Confidence 4688877766 88999999843
No 440
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=37.01 E-value=73 Score=29.16 Aligned_cols=39 Identities=10% Similarity=-0.072 Sum_probs=24.2
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 448 ~fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
..++|++|+.|+..-..+.+ .+...+++++.+.. ++.++
T Consensus 104 ~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~S 144 (191)
T cd04112 104 QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMETS 144 (191)
T ss_pred CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEEe
Confidence 34799999999987543222 23455666677765 44443
No 441
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=37.01 E-value=18 Score=35.05 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=19.4
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++|||= +-|.||||+..-|+|+|+
T Consensus 4 ~IvLiG-----~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 4 NIVLIG-----FMGAGKSTIGRALAKALN 27 (172)
T ss_pred cEEEEc-----CCCCCHhHHHHHHHHHcC
Confidence 355654 459999999999999995
No 442
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=36.96 E-value=18 Score=32.73 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=18.1
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|+++| |-|.||||.+--|++.++
T Consensus 2 i~i~G----~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLG----GPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHcC
Confidence 55665 569999999998888773
No 443
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=36.84 E-value=1.5e+02 Score=24.24 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 010562 442 HIANTKAYGANVVVAVNMFATDSKAELNAV 471 (507)
Q Consensus 442 HIeni~~fGvpvVVAIN~F~tDT~~Ei~~v 471 (507)
.+......+.|++|++|+...-.+.++...
T Consensus 96 ~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~ 125 (163)
T cd00880 96 LLELLRERGKPVLLVLNKIDLLPEEEEEEL 125 (163)
T ss_pred HHHHHHhcCCeEEEEEEccccCChhhHHHH
Confidence 566677899999999999876666666554
No 444
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=36.62 E-value=41 Score=32.09 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=23.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhH--hhHHHHHhhhcCCcE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTT--VGLCQALGAFLDKKV 105 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTtt--IGL~qaL~~~lGk~a 105 (507)
.|+++++|| |-|.||||+. |+...-| ++.|...
T Consensus 24 ~g~~~~ltG----pNg~GKSTllr~i~~~~~l-~~~G~~v 58 (199)
T cd03283 24 KKNGILITG----SNMSGKSTFLRTIGVNVIL-AQAGAPV 58 (199)
T ss_pred CCcEEEEEC----CCCCChHHHHHHHHHHHHH-HHcCCEE
Confidence 379999999 5699999995 4444545 3667653
No 445
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=36.59 E-value=1.1e+02 Score=30.30 Aligned_cols=87 Identities=18% Similarity=0.084 Sum_probs=51.0
Q ss_pred CeEEeecccccccccccccccccccCCCCc------ceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHh
Q 010562 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTP------QCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV 437 (507)
Q Consensus 364 dyVVTEAGFGaDlGaEKF~dIKCR~sgl~P------davVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~ 437 (507)
|+|.-|.. ..+.|. ...|-=|++-|.+ |.+++|..++.- ..+ +.
T Consensus 5 D~V~~~~~-~~~~~~--i~~i~eR~~~L~r~~~~n~D~viiV~d~~~p--------------------~~s-------~~ 54 (245)
T TIGR00157 5 DRVVWEPG-NVVKVY--GGAIAERKNELTRPIVANIDQIVIVSSAVLP--------------------ELS-------LN 54 (245)
T ss_pred cEEEEEec-CCCceE--EEEEecccceEECcccccCCEEEEEEECCCC--------------------CCC-------HH
Confidence 88887732 112232 3344445555544 888888865410 112 23
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHH--HHHHHHHHHcCCC
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAEL--NAVRNAAMAAGAF 481 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei--~~v~~~~~~~g~~ 481 (507)
+|.+.+..++..++|+|+++|+-.-.++.+. +.+..++ +.|..
T Consensus 55 ~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 55 QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence 4666666677789999999999775433333 3444444 57775
No 446
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=36.59 E-value=1.3e+02 Score=30.94 Aligned_cols=45 Identities=13% Similarity=0.021 Sum_probs=33.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCc
Q 010562 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 450 GvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~ 494 (507)
|+|+=|.|--=-=+.++|+..+.+.|.++|+..+-.|+.|..+|.
T Consensus 131 ~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gA 175 (257)
T PRK05283 131 NVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNA 175 (257)
T ss_pred CceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC
Confidence 577767766432333567999999999999986777899987663
No 447
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=36.51 E-value=37 Score=35.96 Aligned_cols=32 Identities=38% Similarity=0.338 Sum_probs=27.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.++|-|||.+ |||||+-=|.+.| ...|+++.
T Consensus 84 ~~~vI~ITGTn------GKTTT~~ml~~iL-~~~g~~~~ 115 (464)
T TIGR01085 84 KLKVIGVTGTN------GKTTTTSLIAQLL-RLLGKKTG 115 (464)
T ss_pred ccEEEEEECCC------CcHhHHHHHHHHH-HHcCCCEE
Confidence 56899999986 9999999999999 47888753
No 448
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=36.50 E-value=99 Score=26.19 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=28.3
Q ss_pred hhHHHHHHHHhh-cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCC
Q 010562 437 VNLARHIANTKA-YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAF 481 (507)
Q Consensus 437 ~NL~kHIeni~~-fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~ 481 (507)
..+...+.+... .++|++|++|+.....+. -.+.+.++++..+..
T Consensus 90 ~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 137 (160)
T cd00876 90 KGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCP 137 (160)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCc
Confidence 344455555544 689999999998754322 224556666666755
No 449
>PRK05973 replicative DNA helicase; Provisional
Probab=36.33 E-value=46 Score=33.37 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=30.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE-EEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a-~~~lReP 112 (507)
+.|.++||+| +-|.||||.+.=++.... +-|+++ +..+=|+
T Consensus 62 ~~Gsl~LIaG----~PG~GKT~lalqfa~~~a-~~Ge~vlyfSlEes 103 (237)
T PRK05973 62 KPGDLVLLGA----RPGHGKTLLGLELAVEAM-KSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCEEEEEe----CCCCCHHHHHHHHHHHHH-hcCCeEEEEEEeCC
Confidence 6799999999 469999999988776553 448765 4455444
No 450
>PLN02540 methylenetetrahydrofolate reductase
Probab=36.31 E-value=35 Score=38.60 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=66.2
Q ss_pred CeEEeecccccccccccccccccccCCCCcceEE---EEeeehHHHhcCCCCCccCCCCCcccccc------cCHHHH-H
Q 010562 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV---IVATIRALKMHGGGPQVVAGKPLDHAYLN------ENVALV-E 433 (507)
Q Consensus 364 dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavV---lVaTvRALK~HGG~~~~~~g~pL~~~l~~------enl~al-~ 433 (507)
||+||-.-|.+|. +++|++ +||..|+.--.+. -+.+.+.+++.-..+ |-.+|+++.+ .+-+++ +
T Consensus 171 dFiITQlfFD~d~-f~~f~~-~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~----Gi~IP~~i~~rLe~~kddde~v~~ 244 (565)
T PLN02540 171 DLIITQLFYDTDI-FLKFVN-DCRQIGITCPIVPGIMPINNYKGFLRMTGFC----KTKIPAEITAALEPIKDNDEAVKA 244 (565)
T ss_pred CEEeeccccCHHH-HHHHHH-HHHhcCCCCCEEeeecccCCHHHHHHHHhcc----CCcCCHHHHHHHHhcCCCHHHHHH
Confidence 7999999999986 678887 8999997532221 234445554332232 4445665543 344553 4
Q ss_pred HHHhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCC
Q 010562 434 AGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGA 480 (507)
Q Consensus 434 ~G~~NL~kHIeni~~fGvpvV--VAIN~F~tDT~~Ei~~v~~~~~~~g~ 480 (507)
.|++-....|+.+...|++=| -++|+. +.+.+.++++|.
T Consensus 245 ~Gieia~e~~~~L~~~Gv~GiHfYTlN~e--------~~v~~ILe~lgl 285 (565)
T PLN02540 245 YGIHLGTEMCKKILAHGIKGLHLYTLNLE--------KSALAILMNLGL 285 (565)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECccCCh--------HHHHHHHHHcCC
Confidence 699888889999999987633 344543 345566666665
No 451
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=36.14 E-value=28 Score=32.74 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=25.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lR 110 (507)
.|+=||++| |.|.||||++.-|.+.=...++-+.+..-|
T Consensus 13 ~g~gvLi~G----~sG~GKStlal~L~~~g~~lvaDD~v~v~~ 51 (149)
T cd01918 13 GGIGVLITG----PSGIGKSELALELIKRGHRLVADDRVVVKR 51 (149)
T ss_pred CCEEEEEEc----CCCCCHHHHHHHHHHcCCeEEECCEEEEEE
Confidence 367788887 789999999987765411234444444433
No 452
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=36.10 E-value=47 Score=34.54 Aligned_cols=35 Identities=34% Similarity=0.446 Sum_probs=27.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
..|..+.||| |+|.|||++---|.+-+. .-++..+
T Consensus 20 ~~~~~~fv~G----~~GtGKs~l~~~i~~~~~-~~~~~~~ 54 (364)
T PF05970_consen 20 EEGLNFFVTG----PAGTGKSFLIKAIIDYLR-SRGKKVL 54 (364)
T ss_pred cCCcEEEEEc----CCCCChhHHHHHHHHHhc-cccceEE
Confidence 4678999997 899999999999988883 4455443
No 453
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=35.97 E-value=54 Score=36.66 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCC-cEEEEecCCCCC--CHHHHHHHH----HHHHHcCC
Q 010562 439 LARHIANTKAYGA-NVVVAVNMFATD--SKAELNAVR----NAAMAAGA 480 (507)
Q Consensus 439 L~kHIeni~~fGv-pvVVAIN~F~tD--T~~Ei~~v~----~~~~~~g~ 480 (507)
.+.|+..++.+|+ |+||++|+...- ++++++.+. ++.++.|.
T Consensus 145 t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~ 193 (632)
T PRK05506 145 TRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGL 193 (632)
T ss_pred CHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCC
Confidence 3467888888887 577899997642 344444443 33345565
No 454
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=35.95 E-value=20 Score=34.29 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=20.6
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHcC
Q 010562 454 VVAVNMFATDSKAELNAVRNAAMAAG 479 (507)
Q Consensus 454 VVAIN~F~tDT~~Ei~~v~~~~~~~g 479 (507)
.|.|--|.+=++.++++++.++...+
T Consensus 259 ~i~IDE~QD~s~~Q~~il~~l~~~~~ 284 (315)
T PF00580_consen 259 HILIDEFQDTSPLQLRILKKLFKNPE 284 (315)
T ss_dssp EEEESSGGG-BHHHHHHHHHHHTTTT
T ss_pred eEEeEccccCCHHHHHHHHHHHHhhc
Confidence 67789998888999999999887543
No 455
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=35.86 E-value=2.1e+02 Score=27.69 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=43.3
Q ss_pred ccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCC-CCCHHHHH----HHHHHHH-HcCCCeEEEccccc
Q 010562 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFA-TDSKAELN----AVRNAAM-AAGAFDAVVCSHHA 490 (507)
Q Consensus 424 l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAI-N~F~-tDT~~Ei~----~v~~~~~-~~g~~~~~~~~~wa 490 (507)
+..++.+..++.+..|++.|+..+.+|.+.||.- ..+. .++++.++ .+.+.++ +.|+. ..+-+.+.
T Consensus 71 l~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~-l~lEn~~~ 143 (273)
T smart00518 71 LASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVV-ILLETTAG 143 (273)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcE-EEEeccCC
Confidence 3456777889999999999999999999988852 1222 23344444 4455554 35665 55655543
No 456
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=35.85 E-value=86 Score=26.69 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=24.8
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcc
Q 010562 446 TKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 446 i~~fGvpvVVAIN~F~tDT~~Ei~-~v~~~~~~~g~~~~~~~~ 487 (507)
++++++|+|+++|+...-.++++. .+.++++..+.. +..++
T Consensus 97 ~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iS 138 (158)
T cd01879 97 LLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTS 138 (158)
T ss_pred HHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEE
Confidence 445799999999997653332222 234555666775 44333
No 457
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.80 E-value=28 Score=38.24 Aligned_cols=35 Identities=23% Similarity=0.091 Sum_probs=26.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.+.|++.|- -|.|||||..-|+-.|. ..|+++.++
T Consensus 241 ~~vI~LVGp----tGvGKTTTiaKLA~~L~-~~GkkVglI 275 (436)
T PRK11889 241 VQTIALIGP----TGVGKTTTLAKMAWQFH-GKKKTVGFI 275 (436)
T ss_pred CcEEEEECC----CCCcHHHHHHHHHHHHH-HcCCcEEEE
Confidence 456777663 69999999999998884 667665543
No 458
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=35.78 E-value=1.1e+02 Score=30.02 Aligned_cols=49 Identities=20% Similarity=0.153 Sum_probs=36.8
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEE
Q 010562 435 GCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAV 484 (507)
Q Consensus 435 G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~ 484 (507)
-+.+..+-|+++++.|+++++..+. ...+..|++.+.+++.+.|+....
T Consensus 143 ~~~~~~~~i~~~~~~g~~~~~~~~v-~~~n~~~l~~~~~~~~~~g~~~~~ 191 (347)
T COG0535 143 VFKRAVEAIKNLKEAGILVVINTTV-TKINYDELPEIADLAAELGVDELN 191 (347)
T ss_pred HHHHHHHHHHHHHHcCCeeeEEEEE-ecCcHHHHHHHHHHHHHcCCCEEE
Confidence 3567778888899999985555444 345688999999999999986433
No 459
>PRK08727 hypothetical protein; Validated
Probab=35.76 E-value=27 Score=33.93 Aligned_cols=32 Identities=25% Similarity=0.527 Sum_probs=25.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
...|+++| |.|.|||+.+.+++..+. .-|+++
T Consensus 41 ~~~l~l~G----~~G~GKThL~~a~~~~~~-~~~~~~ 72 (233)
T PRK08727 41 SDWLYLSG----PAGTGKTHLALALCAAAE-QAGRSS 72 (233)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCcE
Confidence 34588887 579999999999999984 556654
No 460
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.69 E-value=69 Score=33.63 Aligned_cols=105 Identities=21% Similarity=0.281 Sum_probs=72.7
Q ss_pred ccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccc
Q 010562 345 HGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAY 424 (507)
Q Consensus 345 HG~nSviAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l 424 (507)
+|..+|-||-++-.++|. ++++|=-==|.-=|||+=|||-.-...|.-.-|++|+ .|+..
T Consensus 107 ~gaTTVAaTMi~A~~aGI-~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~--------AGaKs----------- 166 (310)
T COG2313 107 NGATTVAATMILAALAGI-KVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVC--------AGAKS----------- 166 (310)
T ss_pred CCcchHHHHHHHHHHcCc-eEEEecCcccccCCcccccccchhHHHHhcCCeEEEe--------cCchh-----------
Confidence 567799999999999976 3455654447889999999998877777644444444 13321
Q ss_pred cccCHHHHHHHHhhHHHHHHHHhhcCCcEEEE-ecCCC--------------CCCHHHHHHHHHHHHHcCC
Q 010562 425 LNENVALVEAGCVNLARHIANTKAYGANVVVA-VNMFA--------------TDSKAELNAVRNAAMAAGA 480 (507)
Q Consensus 425 ~~enl~al~~G~~NL~kHIeni~~fGvpvVVA-IN~F~--------------tDT~~Ei~~v~~~~~~~g~ 480 (507)
+-.+.+-.|-+..+|||||-- -|.|| -||++||.-+.+.-.++|.
T Consensus 167 -----------ILDi~~TlE~LET~gVPvvg~~t~~fPaF~sR~Sg~~~pl~l~~pe~ia~~~~t~~~lgl 226 (310)
T COG2313 167 -----------ILDIGLTLEVLETQGVPVVGYQTNEFPAFFSRESGFRVPLRLESPEEIARILATKWQLGL 226 (310)
T ss_pred -----------hhccHHHHHHHHhcCcceeecCCCcccchhcccCCCcCccccCCHHHHHHHHHHHHHhCC
Confidence 224566788888999999863 23443 3788888877766556655
No 461
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=35.67 E-value=95 Score=31.13 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=17.1
Q ss_pred HHHHHHhhcCCcEEEEecCCCC
Q 010562 441 RHIANTKAYGANVVVAVNMFAT 462 (507)
Q Consensus 441 kHIeni~~fGvpvVVAIN~F~t 462 (507)
++++.++.+++|++|++|+...
T Consensus 114 ~i~~~~~~~~~P~iivvNK~D~ 135 (267)
T cd04169 114 KLFEVCRLRGIPIITFINKLDR 135 (267)
T ss_pred HHHHHHHhcCCCEEEEEECCcc
Confidence 4455566789999999999754
No 462
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=35.65 E-value=85 Score=28.87 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=29.8
Q ss_pred hHHHHHHHHhhcCCcEEEE--ecCCCCCCHHHHHHHHHHHHHcC
Q 010562 438 NLARHIANTKAYGANVVVA--VNMFATDSKAELNAVRNAAMAAG 479 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVA--IN~F~tDT~~Ei~~v~~~~~~~g 479 (507)
+..+-|+.+++.|+++.|. ++....| ++|++.+.+++++.|
T Consensus 141 ~~~~~i~~l~~~gi~~~i~~~v~~~~~~-~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 141 NILKSLEILLRSGIPFELRTTVHRGFLD-EEDLAEIATRIKENG 183 (191)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeCCCCC-HHHHHHHHHHhccCC
Confidence 4555566677778876655 4455555 789999999998887
No 463
>PRK04841 transcriptional regulator MalT; Provisional
Probab=35.61 E-value=23 Score=39.75 Aligned_cols=50 Identities=28% Similarity=0.292 Sum_probs=33.5
Q ss_pred hhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 59 VLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 59 ~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
+++++..-...++++|+| |+|-||||... |-+ ...+.-+-..|++.+--|
T Consensus 22 l~~~l~~~~~~~~~~v~a----paG~GKTtl~~---~~~-~~~~~~~w~~l~~~d~~~ 71 (903)
T PRK04841 22 LLAKLSGANNYRLVLVTS----PAGYGKTTLIS---QWA-AGKNNLGWYSLDESDNQP 71 (903)
T ss_pred HHHHHhcccCCCeEEEEC----CCCCCHHHHHH---HHH-HhCCCeEEEecCcccCCH
Confidence 344454445678999998 89999999864 555 344544456677666665
No 464
>COG0645 Predicted kinase [General function prediction only]
Probab=35.56 E-value=25 Score=34.26 Aligned_cols=25 Identities=52% Similarity=0.817 Sum_probs=20.8
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+++||-+. -|.||||++-+|+..|+
T Consensus 2 ~l~l~~Gl----~GsGKstlA~~l~~~lg 26 (170)
T COG0645 2 RLVLVGGL----PGSGKSTLARGLAELLG 26 (170)
T ss_pred eEEEEecC----CCccHhHHHHHHHhhcC
Confidence 56777776 38899999999999996
No 465
>PRK04182 cytidylate kinase; Provisional
Probab=35.53 E-value=18 Score=32.13 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=18.2
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|.+++. .|.||||++--|++.|
T Consensus 2 ~I~i~G~----~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGP----PGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHc
Confidence 4666664 6999999998888776
No 466
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=35.38 E-value=29 Score=36.66 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=25.0
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
|.|-|||.+ ||||||-=|++.| ...|.++
T Consensus 103 ~~I~ITGT~------GKTTTt~li~~iL-~~~g~~~ 131 (448)
T TIGR01081 103 WVLAVAGTH------GKTTTASMLAWVL-EQCGLKP 131 (448)
T ss_pred CEEEEECCC------cHHHHHHHHHHHH-HhcCCCC
Confidence 489999886 9999999999999 4788775
No 467
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=35.28 E-value=33 Score=35.55 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=30.3
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSl 114 (507)
|.|-|||.| |||||+-=|.+-| ...|.++ ...--|.+
T Consensus 19 ~vI~VtGTN------GKgSt~~~l~~iL-~~~g~~v-g~~tSphl 55 (397)
T TIGR01499 19 PVIHVAGTN------GKGSTCAFLESIL-RAAGYKV-GLFTSPHL 55 (397)
T ss_pred CEEEEeCCC------ChHHHHHHHHHHH-HHcCCCe-eEEeCCCc
Confidence 589999997 9999999999999 5789885 45555554
No 468
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=35.13 E-value=1.3e+02 Score=26.36 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=26.4
Q ss_pred HHHHhh--cCCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcc
Q 010562 443 IANTKA--YGANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 443 Ieni~~--fGvpvVVAIN~F~tDT~~E--------------i~~v~~~~~~~g~~~~~~~~ 487 (507)
++.+++ -++|+|++.|+..-..+.+ .+...++|++.|...+..++
T Consensus 93 ~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 153 (174)
T smart00174 93 YPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECS 153 (174)
T ss_pred HHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEec
Confidence 344443 3899999999976543211 12234678888863344443
No 469
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=34.96 E-value=26 Score=34.69 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=35.5
Q ss_pred CCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhc-CCCCCCce
Q 010562 183 NKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFAR-LDIDPASI 229 (507)
Q Consensus 183 ~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~-L~IDp~~I 229 (507)
.+.+||.|+..|++.|++ .=..-..|.|+++.+++. ||+.|++|
T Consensus 50 ~~~kk~Rlt~eQ~~~LE~---~F~~~~~L~p~~K~~LAk~LgL~pRQV 94 (198)
T KOG0483|consen 50 GKGKKRRLTSEQVKFLEK---SFESEKKLEPERKKKLAKELGLQPRQV 94 (198)
T ss_pred cccccccccHHHHHHhHH---hhccccccChHHHHHHHHhhCCChhHH
Confidence 467899999999999988 223345689999988875 99999877
No 470
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=34.87 E-value=28 Score=34.35 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-++++| |.|.||||++..+++.+.
T Consensus 38 ~lll~G----p~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQG----PPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHhc
Confidence 466665 779999999999999884
No 471
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=34.73 E-value=1.2e+02 Score=30.71 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=33.2
Q ss_pred HhhHHHHHHHHhhcCCc-EEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 010562 436 CVNLARHIANTKAYGAN-VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV 485 (507)
Q Consensus 436 ~~NL~kHIeni~~fGvp-vVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~ 485 (507)
+....+.|+.+++.|++ +.+-+-..+..+++|+..+.+++++.|+. +..
T Consensus 138 ~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~-~~~ 187 (334)
T TIGR02666 138 LEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVT-LRF 187 (334)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCe-EEE
Confidence 33445556666777886 54433333456788999999999999985 443
No 472
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.62 E-value=9.6 Score=43.96 Aligned_cols=58 Identities=5% Similarity=0.027 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccee
Q 010562 188 RSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKI 245 (507)
Q Consensus 188 r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I 245 (507)
++..+-.+.|..++-+.+-.++++...-.+.+...+|..+.-.+..+.+..+-.+|.+
T Consensus 160 ~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 160 HKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred cccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHH
Confidence 3444556678877766666555555554555555565555545566666666666654
No 473
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=34.61 E-value=43 Score=40.67 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=30.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.+++++|+| ++|.||||+...+.+++ ...|.+.+.+
T Consensus 396 ~~r~~~v~G----~AGTGKTt~l~~~~~~~-e~~G~~V~g~ 431 (1102)
T PRK13826 396 PARIAAVVG----RAGAGKTTMMKAAREAW-EAAGYRVVGG 431 (1102)
T ss_pred cCCeEEEEe----CCCCCHHHHHHHHHHHH-HHcCCeEEEE
Confidence 467999998 69999999999999999 4778877654
No 474
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=34.59 E-value=33 Score=30.98 Aligned_cols=25 Identities=32% Similarity=0.218 Sum_probs=19.2
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+-|.||||.+.-|++.+. ..|.+++
T Consensus 7 ~~GsGKSTla~~L~~~l~-~~g~~~~ 31 (149)
T cd02027 7 LSGSGKSTIARALEEKLF-QRGRPVY 31 (149)
T ss_pred CCCCCHHHHHHHHHHHHH-HcCCCEE
Confidence 359999999999999983 5565543
No 475
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=34.55 E-value=86 Score=32.07 Aligned_cols=49 Identities=8% Similarity=-0.003 Sum_probs=34.0
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 010562 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV 485 (507)
Q Consensus 436 ~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~ 485 (507)
+....+.|+.++++|+++.|..+.- .++.+|++.+.+++++.|+..+..
T Consensus 143 f~~v~~~i~~l~~~~~~~~i~~~v~-~~n~~~l~~i~~~~~~~g~~~~~~ 191 (370)
T PRK13758 143 FSKVERAAELFKKYKVEFNILCVVT-SNTARHVNKIYKYFKEKDFKFLQF 191 (370)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEec-cccccCHHHHHHHHHHcCCCeEee
Confidence 4455555666667777777665443 356788999999999999974433
No 476
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=34.47 E-value=1.1e+02 Score=26.95 Aligned_cols=41 Identities=10% Similarity=-0.074 Sum_probs=24.4
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcccc
Q 010562 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
-++|++|+.|+..-..+. ..+...++++..+..-+.+|..+
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 149 (167)
T cd01867 107 EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKA 149 (167)
T ss_pred CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 479999999987543211 23345567777777533444433
No 477
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=34.25 E-value=93 Score=27.21 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCe
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFD 482 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~ 482 (507)
+...++......++|++|++|+-.-.... ..+..++++++.+...
T Consensus 96 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 142 (165)
T cd01864 96 HWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLA 142 (165)
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcE
Confidence 44444544456789999999986543222 2355677888777643
No 478
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=34.19 E-value=2.2e+02 Score=27.14 Aligned_cols=61 Identities=23% Similarity=0.199 Sum_probs=38.8
Q ss_pred ccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCC--CCCC-----------HHHHHHHHHHHHHcCCCeEEEcc
Q 010562 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMF--ATDS-----------KAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 426 ~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F--~tDT-----------~~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
.++-+..++++..++++|+.++++|.++||..--+ ..+. .+-++.+.++|++.|+. ..+..
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~-l~~e~ 146 (274)
T COG1082 73 SPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIG-LALEN 146 (274)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCc-eEEee
Confidence 34444448889999999999999999988754421 1111 23344445556677776 44543
No 479
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=33.98 E-value=35 Score=30.57 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=20.9
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+||+| |.|.||||++.-++... .+-|++++
T Consensus 2 ~li~G----~~G~GKT~l~~~~~~~~-~~~g~~v~ 31 (187)
T cd01124 2 TLLSG----GPGTGKTTFALQFLYAG-LARGEPGL 31 (187)
T ss_pred EEEEc----CCCCCHHHHHHHHHHHH-HHCCCcEE
Confidence 45555 67999999998876665 25566653
No 480
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.96 E-value=31 Score=38.08 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=28.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
-+|+.-+. -|.|||||+-=|+.-| .+.|+++.++
T Consensus 101 ~vImmvGL----QGsGKTTt~~KLA~~l-kk~~~kvllV 134 (451)
T COG0541 101 TVILMVGL----QGSGKTTTAGKLAKYL-KKKGKKVLLV 134 (451)
T ss_pred eEEEEEec----cCCChHhHHHHHHHHH-HHcCCceEEE
Confidence 47888887 5999999999999999 4689987654
No 481
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=33.90 E-value=1.3e+02 Score=28.37 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=37.7
Q ss_pred CCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHH
Q 010562 362 PGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLAR 441 (507)
Q Consensus 362 ~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~k 441 (507)
..||||-+.+-|.+.-....+ ..-|.||+|++.-.. + +.++.+
T Consensus 108 ~yD~VIiD~p~~~~~~~~~~l--------~~ad~vliv~~~~~~-------------------------s----~~~~~~ 150 (251)
T TIGR01969 108 DTDFLLIDAPAGLERDAVTAL--------AAADELLLVVNPEIS-------------------------S----ITDALK 150 (251)
T ss_pred hCCEEEEeCCCccCHHHHHHH--------HhCCeEEEEECCCCc-------------------------h----HHHHHH
Confidence 349999998877653222221 234777777752210 1 123344
Q ss_pred HHHHHhhcCCcE-EEEecCCCCC
Q 010562 442 HIANTKAYGANV-VVAVNMFATD 463 (507)
Q Consensus 442 HIeni~~fGvpv-VVAIN~F~tD 463 (507)
.++..+.++++. .|.+|+|...
T Consensus 151 ~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 151 TKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred HHHHHHhcCCceEEEEEECCCch
Confidence 456666778874 5889998664
No 482
>CHL00071 tufA elongation factor Tu
Probab=33.87 E-value=82 Score=33.33 Aligned_cols=43 Identities=26% Similarity=0.189 Sum_probs=29.9
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCCCHHHH-----HHHHHHHHHcCC
Q 010562 438 NLARHIANTKAYGAN-VVVAVNMFATDSKAEL-----NAVRNAAMAAGA 480 (507)
Q Consensus 438 NL~kHIeni~~fGvp-vVVAIN~F~tDT~~Ei-----~~v~~~~~~~g~ 480 (507)
.-..|++.++++|+| +||++|+...-+++|+ +.+.++.+..+.
T Consensus 115 qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 115 QTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 566789999999999 7799999875444442 245555555553
No 483
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=33.85 E-value=94 Score=32.88 Aligned_cols=78 Identities=3% Similarity=-0.043 Sum_probs=51.0
Q ss_pred hHHHhcC-CCCCccCCCCCcccccccCHHHHHHHH--hhHHHHHHHHhhcCCcEEE---EecCCCCCCHHHHHHHHHHHH
Q 010562 403 RALKMHG-GGPQVVAGKPLDHAYLNENVALVEAGC--VNLARHIANTKAYGANVVV---AVNMFATDSKAELNAVRNAAM 476 (507)
Q Consensus 403 RALK~HG-G~~~~~~g~pL~~~l~~enl~al~~G~--~NL~kHIeni~~fGvpvVV---AIN~F~tDT~~Ei~~v~~~~~ 476 (507)
++++-.| |......| .+...++-+..+.++. ....+-|+.+++.|-.+.| .|--||.+|+++++...++++
T Consensus 240 ~~m~~~~~~~~~l~ig---iES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~ 316 (429)
T TIGR00089 240 ELIAENPKVCKHLHLP---VQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLDLVE 316 (429)
T ss_pred HHHHhCCCccCceeec---cccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHH
Confidence 5555554 45555554 2444455566666653 3555667778887722333 355699999999999999999
Q ss_pred HcCCCeE
Q 010562 477 AAGAFDA 483 (507)
Q Consensus 477 ~~g~~~~ 483 (507)
+.+...+
T Consensus 317 ~~~~~~~ 323 (429)
T TIGR00089 317 EVKFDKL 323 (429)
T ss_pred hcCCCEe
Confidence 9998633
No 484
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=33.79 E-value=89 Score=30.67 Aligned_cols=44 Identities=5% Similarity=-0.094 Sum_probs=27.3
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
..+++++.++++|+|++|++|+.......--+.+.+.-+..+..
T Consensus 104 ~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~ 147 (237)
T cd04168 104 QTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSD 147 (237)
T ss_pred HHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCC
Confidence 34566777788999999999997654311122333333445654
No 485
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=33.70 E-value=34 Score=34.17 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=28.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
+++=++.+| |.|.|||.++++++..|. +-|.++ ..+.-|
T Consensus 104 ~~~nl~l~G----~~G~GKThLa~Ai~~~l~-~~g~sv-~f~~~~ 142 (254)
T COG1484 104 RGENLVLLG----PPGVGKTHLAIAIGNELL-KAGISV-LFITAP 142 (254)
T ss_pred cCCcEEEEC----CCCCcHHHHHHHHHHHHH-HcCCeE-EEEEHH
Confidence 455555555 789999999999999995 666664 344433
No 486
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=33.55 E-value=24 Score=37.57 Aligned_cols=93 Identities=18% Similarity=0.099 Sum_probs=62.3
Q ss_pred CccccccCCCCCCceeeecCcccccccchhhhH------HHHHHhHHHHHHHh-hhhccccCChhHhhhccCCCCCcCCc
Q 010562 116 PTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHA------ITAANNLLAAAIDT-RIFHEASQSDKALFNRLCPPNKEGER 188 (507)
Q Consensus 116 P~FGiKGGAaGGGysQViPmediNLHfTGD~HA------ItaAnNLlaA~iDn-~i~h~n~~~~~~l~~rl~p~~~~g~r 188 (507)
+-++.+.++.+. ..+++|+|..|| ...+-|||.+.+|+ ...+. +-|.. ...+||
T Consensus 135 ~~~i~~~~~~~~---------~~~i~~~~~~H~~g~~~~~~~~~~li~r~~~~~~~~~~--lld~~-~~~vvp------- 195 (374)
T COG2866 135 DPLITFPESNPE---------HKTILITAGQHARGEKMVEWFLYNLILRYLDPDVQVRK--LLDRA-DLHVVP------- 195 (374)
T ss_pred cceeeecCCCCc---------cceeeEecccccCccHHHHHHHHHHHHHhcCccchhhh--hhccc-cEEEec-------
Confidence 556666665543 789999999996 77889999999998 11111 11111 123555
Q ss_pred chhHHHHHHHHhhcCCCCCCCCCCHH------HHhhhhcCCCCCCceeeeecccccccccc
Q 010562 189 SFSNIMFRRLKKLGISKTKPEDLTPE------EINRFARLDIDPASITWRRVMDVNDRFLR 243 (507)
Q Consensus 189 ~f~~~~~~rl~klgi~~~~p~~lt~e------e~~~~~~L~IDp~~I~w~RvlD~NDR~LR 243 (507)
..|||-...- +...++|.-|+|.--.|+=++-+||+++.
T Consensus 196 ----------------~~NpDG~~~~~lr~na~~~dLnr~~~~~~~~~~~~~~~~~~~~~~ 240 (374)
T COG2866 196 ----------------NVNPDGSDLGNLRTNANGVDLNRNFIAPNEEEGKEVYRWNDAALE 240 (374)
T ss_pred ----------------ccCCchhhhcccccccCccchhhhccCCCcccchHHHhhhhhhcc
Confidence 3444443222 44455566699999999999999999988
No 487
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=33.51 E-value=55 Score=34.03 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=27.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
.++-|+|+| |-|.||||+...|.+.+-..-....++++=+|
T Consensus 147 ~~~~ilI~G----~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~ 187 (319)
T PRK13894 147 AHRNILVIG----GTGSGKTTLVNAIINEMVIQDPTERVFIIEDT 187 (319)
T ss_pred cCCeEEEEC----CCCCCHHHHHHHHHHhhhhcCCCceEEEEcCC
Confidence 467889987 45999999999998876211123345555443
No 488
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=33.51 E-value=2e+02 Score=27.99 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=41.9
Q ss_pred cCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCC----CCCH-------HHHHHHHHHHHHcCCCeEEEccc
Q 010562 427 ENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA----TDSK-------AELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 427 enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~----tDT~-------~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
+|.+.-++.++.+++.|+..+.+|.++|+. .-+. .+.+ +.+..+.+.+++.|+. +.+-++
T Consensus 89 ~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~-i~iE~~ 159 (283)
T PRK13209 89 EDDAVRAQALEIMRKAIQLAQDLGIRVIQL-AGYDVYYEQANNETRRRFIDGLKESVELASRASVT-LAFEIM 159 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-CCccccccccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeec
Confidence 455667788999999999999999998874 3222 1112 2345566777788996 666655
No 489
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=33.44 E-value=1.1e+02 Score=25.90 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=24.8
Q ss_pred HhhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEc
Q 010562 446 TKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 446 i~~fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~ 486 (507)
....++|++|+.|+..-..+. ..+.+.+++++.+..-+.+|
T Consensus 101 ~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 143 (162)
T cd04123 101 MRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETS 143 (162)
T ss_pred hCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 334489999999997654322 12345566667777533333
No 490
>COG2403 Predicted GTPase [General function prediction only]
Probab=33.43 E-value=37 Score=37.30 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=29.5
Q ss_pred EeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 74 VGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 74 VTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
|-+|+-|-.|.|||++|-=++|-| +..|.+.+ .+|-
T Consensus 128 viaV~atrtg~GKsaVS~~v~r~l-~ergyrv~-vVrh 163 (449)
T COG2403 128 VIAVTATRTGVGKSAVSRYVARLL-RERGYRVC-VVRH 163 (449)
T ss_pred eEEEEEeccccchhHHHHHHHHHH-HHcCCceE-EEec
Confidence 446677899999999999999999 58899954 4664
No 491
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=33.40 E-value=33 Score=35.60 Aligned_cols=39 Identities=28% Similarity=0.246 Sum_probs=32.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lR 110 (507)
=.+|.|-.| |==|.|||.+++-|++.| ...|.+..+.-|
T Consensus 28 vPVIsVGNi--tvGGTGKTP~v~~La~~l-~~~G~~~~IlSR 66 (311)
T TIGR00682 28 VPVVIVGNL--SVGGTGKTPVVVWLAELL-KDRGLRVGVLSR 66 (311)
T ss_pred CCEEEEecc--ccCCcChHHHHHHHHHHH-HHCCCEEEEECC
Confidence 447777666 567999999999999999 578999888888
No 492
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=33.29 E-value=42 Score=34.49 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=27.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHH--hhhcCCcEEEEecC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL--GAFLDKKVVTCLRQ 111 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL--~~~lGk~a~~~lRe 111 (507)
++|+|+|. +|.|||.++.-|+.-| . ..++++....-.
T Consensus 2 ~v~~I~G~----aGTGKTvla~~l~~~l~~~-~~~~~~~~l~~n 40 (352)
T PF09848_consen 2 QVILITGG----AGTGKTVLALNLAKELQNS-EEGKKVLYLCGN 40 (352)
T ss_pred eEEEEEec----CCcCHHHHHHHHHHHhhcc-ccCCceEEEEec
Confidence 47899986 8999999999999888 4 345555554443
No 493
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=32.96 E-value=33 Score=34.41 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|++++|+| |.|.||||.+.-++-..
T Consensus 93 ~~g~i~ei~G----~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 93 ETQAITEVFG----EFGSGKTQICHQLAVNV 119 (310)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 6799999999 88999999998885443
No 494
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=32.96 E-value=46 Score=31.25 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=21.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHh--hHHHHHhhhcCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTV--GLCQALGAFLDK 103 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttI--GL~qaL~~~lGk 103 (507)
.|.+++|| |-|.||||.-. |+.+.+ .+.|-
T Consensus 28 ~~~~~ltG----~Ng~GKStll~~i~~~~~~-~~~G~ 59 (200)
T cd03280 28 KRVLVITG----PNAGGKTVTLKTLGLLTLM-AQSGL 59 (200)
T ss_pred ceEEEEEC----CCCCChHHHHHHHHHHHHH-HHcCC
Confidence 37899998 55999999854 444555 35553
No 495
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=32.95 E-value=61 Score=27.82 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=17.2
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.++|++ |.|.|||++.+...-..
T Consensus 25 ~~~~i~~----~~GsGKT~~~~~~~~~~ 48 (201)
T smart00487 25 RDVILAA----PTGSGKTLAALLPALEA 48 (201)
T ss_pred CcEEEEC----CCCCchhHHHHHHHHHH
Confidence 6677776 67999999666554444
No 496
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=32.95 E-value=38 Score=35.97 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=26.2
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
++..++|-|||-+ |||||+-=|++.| ...|+.
T Consensus 97 ~~~~~vI~VTGSn------GKTTT~~ml~~iL-~~~g~~ 128 (453)
T PRK10773 97 QVPARVVALTGSS------GKTSVKEMTAAIL-RQCGNT 128 (453)
T ss_pred cCCCCEEEEcCCC------chHHHHHHHHHHH-HhcCcc
Confidence 3457899999875 9999999999999 467763
No 497
>PRK06893 DNA replication initiation factor; Validated
Probab=32.93 E-value=32 Score=33.28 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=22.6
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
.+++.| |.|.|||+++.+++..+. .-|+++
T Consensus 41 ~l~l~G----~~G~GKThL~~ai~~~~~-~~~~~~ 70 (229)
T PRK06893 41 FFYIWG----GKSSGKSHLLKAVSNHYL-LNQRTA 70 (229)
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHHH-HcCCCe
Confidence 444544 789999999999999884 446654
No 498
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=32.93 E-value=34 Score=40.69 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
|.+|+|+||++ .|+|||+++-..--|
T Consensus 24 P~~~l~v~TGv----SGSGKSSLafDtl~a 49 (943)
T PRK00349 24 PRDKLVVFTGL----SGSGKSSLAFDTIYA 49 (943)
T ss_pred CCCceEEEecC----CCCCchhHHHHHHHH
Confidence 88999999997 499999999876444
No 499
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=32.82 E-value=27 Score=35.63 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=29.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC--------CCCCc---cccccC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP--------SQGPT---FGIKGG 123 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP--------SlGP~---FGiKGG 123 (507)
+|++.=| .-|||||.++. |.-++++..|+.+-++==-+ .|+|+ ||++-|
T Consensus 91 ~G~laEm------~TGEGKTli~~-l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~ 150 (266)
T PF07517_consen 91 KGRLAEM------KTGEGKTLIAA-LPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVG 150 (266)
T ss_dssp TTSEEEE------STTSHHHHHHH-HHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EE
T ss_pred cceeEEe------cCCCCcHHHHH-HHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccc
Confidence 4776655 35999998874 66677777888876653221 35676 466555
No 500
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=32.80 E-value=1.2e+02 Score=32.00 Aligned_cols=79 Identities=5% Similarity=0.025 Sum_probs=54.6
Q ss_pred ehHHHhcCC-CCCccCCCCCcccccccCHHHHHHHH--hhHHHHHHHHhh--cCCcEEE-EecCCCCCCHHHHHHHHHHH
Q 010562 402 IRALKMHGG-GPQVVAGKPLDHAYLNENVALVEAGC--VNLARHIANTKA--YGANVVV-AVNMFATDSKAELNAVRNAA 475 (507)
Q Consensus 402 vRALK~HGG-~~~~~~g~pL~~~l~~enl~al~~G~--~NL~kHIeni~~--fGvpvVV-AIN~F~tDT~~Ei~~v~~~~ 475 (507)
+++++-+|+ .+....|- +....+-++.+.|+. +...+-|+.+++ .|+.+.. .|-=||.+|+++++...+++
T Consensus 238 l~~m~~~~~~~~~l~lgl---ESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i 314 (414)
T TIGR01579 238 LEAIASEKRLCPHLHLSL---QSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMV 314 (414)
T ss_pred HHHHHhcCccCCCeEECC---CcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHH
Confidence 456664543 45555552 444455667776664 466677788887 6776544 46679999999999999999
Q ss_pred HHcCCCeE
Q 010562 476 MAAGAFDA 483 (507)
Q Consensus 476 ~~~g~~~~ 483 (507)
++.+...+
T Consensus 315 ~~~~~~~~ 322 (414)
T TIGR01579 315 KEIEFSHL 322 (414)
T ss_pred HhCCCCEE
Confidence 99988633
Done!