Query 010562
Match_columns 507
No_of_seqs 233 out of 998
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:28:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do6_A Formate--tetrahydrofola 100.0 3E-213 9E-218 1642.9 28.5 407 28-499 2-408 (543)
2 3pzx_A Formate--tetrahydrofola 100.0 5E-202 2E-206 1565.1 26.6 419 14-499 2-420 (557)
3 2eo2_A Adult MALE hypothalamus 100.0 1E-30 3.5E-35 212.3 5.4 70 162-232 2-71 (71)
4 3cio_A ETK, tyrosine-protein k 97.2 0.00016 5.5E-09 70.0 3.5 52 67-122 102-156 (299)
5 3bfv_A CAPA1, CAPB2, membrane 97.1 0.00022 7.7E-09 68.1 3.6 52 67-122 80-134 (271)
6 3la6_A Tyrosine-protein kinase 96.8 0.00052 1.8E-08 66.4 3.0 52 67-122 90-144 (286)
7 3zq6_A Putative arsenical pump 96.0 0.0035 1.2E-07 60.9 3.7 53 67-123 10-65 (324)
8 1hyq_A MIND, cell division inh 96.0 0.0034 1.2E-07 57.5 3.0 50 69-122 2-54 (263)
9 3q9l_A Septum site-determining 95.8 0.0038 1.3E-07 56.6 2.5 49 69-121 2-53 (260)
10 3ea0_A ATPase, para family; al 95.6 0.0099 3.4E-07 53.4 4.4 37 68-108 3-40 (245)
11 3end_A Light-independent proto 95.4 0.011 3.7E-07 55.9 4.3 40 67-111 39-78 (307)
12 1g3q_A MIND ATPase, cell divis 95.4 0.012 4.1E-07 52.7 4.2 49 69-121 2-53 (237)
13 1byi_A Dethiobiotin synthase; 95.2 0.009 3.1E-07 53.3 2.8 34 70-107 2-35 (224)
14 2woo_A ATPase GET3; tail-ancho 95.1 0.0081 2.8E-07 58.8 2.5 51 68-123 17-70 (329)
15 2ph1_A Nucleotide-binding prot 95.0 0.021 7.1E-07 53.1 4.8 38 67-108 16-53 (262)
16 3k9g_A PF-32 protein; ssgcid, 94.9 0.019 6.4E-07 53.0 4.1 37 67-108 25-61 (267)
17 4tmk_A Protein (thymidylate ki 94.8 0.019 6.4E-07 53.6 3.9 41 68-113 2-42 (213)
18 1wcv_1 SOJ, segregation protei 94.8 0.014 4.9E-07 53.9 3.1 38 67-108 4-41 (257)
19 2woj_A ATPase GET3; tail-ancho 94.7 0.013 4.6E-07 58.2 2.9 51 68-123 16-71 (354)
20 2wwf_A Thymidilate kinase, put 94.7 0.027 9.1E-07 49.5 4.3 47 67-119 8-54 (212)
21 3lv8_A DTMP kinase, thymidylat 94.4 0.028 9.5E-07 53.5 4.2 42 67-113 25-66 (236)
22 3ug7_A Arsenical pump-driving 94.3 0.036 1.2E-06 54.8 4.7 53 67-123 23-77 (349)
23 3ld9_A DTMP kinase, thymidylat 94.2 0.025 8.5E-07 53.6 3.2 44 66-114 18-62 (223)
24 1nn5_A Similar to deoxythymidy 94.0 0.051 1.7E-06 47.7 4.6 43 67-115 7-49 (215)
25 2oze_A ORF delta'; para, walke 93.6 0.054 1.9E-06 50.7 4.3 39 68-108 33-71 (298)
26 3igf_A ALL4481 protein; two-do 93.4 0.015 5.1E-07 59.0 0.3 54 70-132 3-58 (374)
27 4dzz_A Plasmid partitioning pr 93.4 0.056 1.9E-06 47.1 3.8 35 70-108 2-36 (206)
28 3fkq_A NTRC-like two-domain pr 93.4 0.06 2E-06 53.2 4.4 51 67-121 141-193 (373)
29 4edh_A DTMP kinase, thymidylat 93.3 0.062 2.1E-06 49.9 4.1 40 68-113 5-44 (213)
30 3fwy_A Light-independent proto 93.0 0.081 2.8E-06 52.0 4.6 51 67-122 46-96 (314)
31 1cp2_A CP2, nitrogenase iron p 92.8 0.068 2.3E-06 49.0 3.7 34 70-108 2-35 (269)
32 3io3_A DEHA2D07832P; chaperone 92.7 0.085 2.9E-06 52.8 4.4 52 67-123 16-71 (348)
33 3iqw_A Tail-anchored protein t 92.7 0.075 2.6E-06 52.8 4.0 48 70-122 17-66 (334)
34 1ihu_A Arsenical pump-driving 92.7 0.047 1.6E-06 56.9 2.6 50 68-123 7-59 (589)
35 2afh_E Nitrogenase iron protei 92.6 0.075 2.6E-06 49.8 3.7 34 70-108 3-36 (289)
36 3cwq_A Para family chromosome 92.5 0.097 3.3E-06 47.4 4.2 33 70-107 1-33 (209)
37 3ez2_A Plasmid partition prote 92.5 0.11 3.7E-06 51.4 4.7 39 67-108 106-149 (398)
38 3ez9_A Para; DNA binding, wing 92.4 0.082 2.8E-06 52.4 3.9 39 67-108 109-152 (403)
39 3kjh_A CO dehydrogenase/acetyl 92.4 0.044 1.5E-06 48.7 1.7 40 81-121 8-49 (254)
40 3v9p_A DTMP kinase, thymidylat 92.3 0.099 3.4E-06 49.4 4.1 43 67-115 23-69 (227)
41 3of5_A Dethiobiotin synthetase 92.2 0.058 2E-06 50.5 2.3 37 70-112 5-41 (228)
42 2xj4_A MIPZ; replication, cell 91.7 0.11 3.9E-06 48.9 3.8 36 69-108 4-39 (286)
43 3qxc_A Dethiobiotin synthetase 91.7 0.13 4.5E-06 49.1 4.2 37 67-107 19-55 (242)
44 2xxa_A Signal recognition part 91.1 0.16 5.3E-06 52.4 4.3 36 68-108 99-135 (433)
45 3fgn_A Dethiobiotin synthetase 91.1 0.096 3.3E-06 50.3 2.6 43 60-107 18-60 (251)
46 1zu4_A FTSY; GTPase, signal re 90.9 0.17 5.9E-06 49.8 4.2 37 67-108 103-139 (320)
47 2plr_A DTMP kinase, probable t 90.3 0.22 7.7E-06 43.2 4.0 37 69-112 4-40 (213)
48 2z0h_A DTMP kinase, thymidylat 90.2 0.23 7.9E-06 42.8 4.0 37 71-113 2-38 (197)
49 2qor_A Guanylate kinase; phosp 89.4 0.22 7.5E-06 44.3 3.3 47 67-117 10-56 (204)
50 2px0_A Flagellar biosynthesis 89.3 0.34 1.2E-05 47.0 4.8 38 67-108 103-140 (296)
51 2yvu_A Probable adenylyl-sulfa 89.1 0.38 1.3E-05 41.8 4.6 42 60-106 4-45 (186)
52 3tmk_A Thymidylate kinase; pho 88.8 0.27 9.2E-06 46.1 3.6 37 68-113 4-40 (216)
53 3pg5_A Uncharacterized protein 88.3 0.21 7.2E-06 49.3 2.6 35 70-108 2-36 (361)
54 1vma_A Cell division protein F 88.1 0.37 1.3E-05 47.3 4.2 37 67-108 102-138 (306)
55 3kl4_A SRP54, signal recogniti 87.7 0.37 1.3E-05 50.0 4.1 35 68-107 96-130 (433)
56 4hlc_A DTMP kinase, thymidylat 87.7 0.37 1.3E-05 44.3 3.7 38 69-113 2-39 (205)
57 1xjc_A MOBB protein homolog; s 87.2 0.56 1.9E-05 42.7 4.5 39 70-113 5-43 (169)
58 2r8r_A Sensor protein; KDPD, P 87.0 0.68 2.3E-05 44.6 5.2 42 67-112 3-44 (228)
59 2ocp_A DGK, deoxyguanosine kin 86.8 0.36 1.2E-05 44.0 3.1 39 68-116 1-39 (241)
60 3dm5_A SRP54, signal recogniti 86.7 0.52 1.8E-05 49.2 4.5 36 68-108 99-134 (443)
61 3tau_A Guanylate kinase, GMP k 85.9 0.4 1.4E-05 43.1 2.8 45 67-115 6-50 (208)
62 2b8t_A Thymidine kinase; deoxy 85.7 0.59 2E-05 44.1 4.0 44 67-117 10-53 (223)
63 4eaq_A DTMP kinase, thymidylat 85.4 0.69 2.3E-05 42.9 4.2 43 67-116 24-66 (229)
64 1ls1_A Signal recognition part 84.7 0.71 2.4E-05 44.6 4.1 36 68-108 97-132 (295)
65 2v54_A DTMP kinase, thymidylat 84.4 0.51 1.8E-05 41.0 2.7 41 68-116 3-43 (204)
66 1j8m_F SRP54, signal recogniti 84.3 0.87 3E-05 44.3 4.6 35 69-108 98-132 (297)
67 2ffh_A Protein (FFH); SRP54, s 83.9 0.83 2.8E-05 47.2 4.4 35 68-107 97-131 (425)
68 1qhx_A CPT, protein (chloramph 83.9 0.5 1.7E-05 40.3 2.4 26 69-98 3-28 (178)
69 3a00_A Guanylate kinase, GMP k 83.4 0.91 3.1E-05 39.9 3.9 45 69-117 1-45 (186)
70 2v3c_C SRP54, signal recogniti 83.1 0.76 2.6E-05 47.3 3.8 35 69-108 99-133 (432)
71 3hjn_A DTMP kinase, thymidylat 82.8 0.6 2.1E-05 42.5 2.6 37 71-113 2-38 (197)
72 2rhm_A Putative kinase; P-loop 82.5 0.75 2.6E-05 39.5 2.9 27 67-97 3-29 (193)
73 1a7j_A Phosphoribulokinase; tr 82.1 1.2 3.9E-05 43.1 4.4 27 68-98 4-30 (290)
74 2pbr_A DTMP kinase, thymidylat 81.8 1.4 4.7E-05 37.6 4.4 38 70-113 1-38 (195)
75 3a4m_A L-seryl-tRNA(SEC) kinas 81.5 1 3.5E-05 42.0 3.7 34 68-106 3-36 (260)
76 1r5b_A Eukaryotic peptide chai 81.3 5.5 0.00019 40.8 9.3 92 379-499 132-242 (467)
77 1kht_A Adenylate kinase; phosp 81.1 0.9 3.1E-05 38.7 2.9 26 69-98 3-28 (192)
78 1xx6_A Thymidine kinase; NESG, 80.9 1.4 4.7E-05 40.5 4.2 46 67-119 6-51 (191)
79 1np6_A Molybdopterin-guanine d 80.7 1.6 5.4E-05 39.5 4.5 38 70-112 7-44 (174)
80 2j37_W Signal recognition part 80.0 1.2 4.1E-05 47.0 4.0 35 69-108 101-135 (504)
81 2orw_A Thymidine kinase; TMTK, 80.0 1.7 5.8E-05 39.0 4.5 43 69-118 3-45 (184)
82 1e6c_A Shikimate kinase; phosp 80.0 0.83 2.8E-05 38.6 2.3 25 70-98 3-27 (173)
83 1yrb_A ATP(GTP)binding protein 79.9 1.2 4E-05 40.4 3.4 43 68-113 10-52 (262)
84 2pez_A Bifunctional 3'-phospho 79.5 1.4 4.8E-05 38.0 3.6 35 67-106 3-37 (179)
85 3trf_A Shikimate kinase, SK; a 79.3 0.99 3.4E-05 38.8 2.6 26 68-97 4-29 (185)
86 1gtv_A TMK, thymidylate kinase 79.0 0.59 2E-05 40.9 1.1 38 70-113 1-38 (214)
87 1nks_A Adenylate kinase; therm 78.9 1.7 5.9E-05 36.9 4.0 30 70-104 2-31 (194)
88 1ihu_A Arsenical pump-driving 78.7 1.5 5.1E-05 45.8 4.2 49 68-120 325-375 (589)
89 2c95_A Adenylate kinase 1; tra 78.6 1.2 4.2E-05 38.2 3.0 27 68-98 8-34 (196)
90 1kgd_A CASK, peripheral plasma 78.6 1.4 4.8E-05 38.6 3.4 44 68-115 4-47 (180)
91 3cm0_A Adenylate kinase; ATP-b 77.8 1 3.6E-05 38.6 2.3 27 68-98 3-29 (186)
92 3kb2_A SPBC2 prophage-derived 77.7 1.2 4E-05 37.3 2.6 24 70-97 2-25 (173)
93 3t1o_A Gliding protein MGLA; G 77.7 5.8 0.0002 33.3 6.8 55 433-488 116-173 (198)
94 3lnc_A Guanylate kinase, GMP k 77.5 1.3 4.3E-05 40.1 2.8 46 67-117 25-71 (231)
95 2vli_A Antibiotic resistance p 77.5 1.1 3.8E-05 38.2 2.4 27 68-98 4-30 (183)
96 3e1s_A Exodeoxyribonuclease V, 77.3 1.8 6.1E-05 45.9 4.3 36 68-108 203-238 (574)
97 2j9r_A Thymidine kinase; TK1, 77.3 2.2 7.6E-05 40.6 4.6 46 67-119 26-71 (214)
98 3uie_A Adenylyl-sulfate kinase 76.3 1.5 5.2E-05 38.8 3.0 33 67-104 23-55 (200)
99 1lvg_A Guanylate kinase, GMP k 76.2 1.6 5.5E-05 39.0 3.2 45 68-116 3-47 (198)
100 3vaa_A Shikimate kinase, SK; s 75.9 1.5 5.3E-05 38.7 2.9 27 67-97 23-49 (199)
101 3ney_A 55 kDa erythrocyte memb 75.7 2 6.8E-05 39.9 3.7 45 68-116 18-62 (197)
102 1g5t_A COB(I)alamin adenosyltr 74.8 2.6 8.8E-05 39.6 4.2 36 67-108 27-62 (196)
103 1m7g_A Adenylylsulfate kinase; 74.5 2.7 9.2E-05 37.5 4.1 36 67-106 23-58 (211)
104 3bdk_A D-mannonate dehydratase 74.3 5.8 0.0002 40.6 7.0 25 432-456 99-123 (386)
105 1tev_A UMP-CMP kinase; ploop, 74.2 1.6 5.4E-05 37.2 2.4 25 69-97 3-27 (196)
106 2j41_A Guanylate kinase; GMP, 74.2 2 7E-05 37.2 3.2 27 67-97 4-30 (207)
107 3iij_A Coilin-interacting nucl 74.0 1.7 5.9E-05 37.3 2.7 26 68-97 10-35 (180)
108 1knq_A Gluconate kinase; ALFA/ 73.7 2.2 7.4E-05 36.4 3.2 27 67-97 6-32 (175)
109 3bos_A Putative DNA replicatio 73.7 2.9 9.8E-05 36.5 4.0 33 67-104 50-82 (242)
110 2bwj_A Adenylate kinase 5; pho 73.4 2 6.8E-05 37.0 2.9 27 68-98 11-37 (199)
111 3jvv_A Twitching mobility prot 73.3 2.2 7.6E-05 42.7 3.6 41 68-113 122-162 (356)
112 3can_A Pyruvate-formate lyase- 72.8 9.9 0.00034 33.1 7.3 55 438-492 80-138 (182)
113 4eun_A Thermoresistant glucoki 72.4 2.1 7.3E-05 37.8 2.9 27 67-97 27-53 (200)
114 1of1_A Thymidine kinase; trans 72.2 1.5 5.2E-05 45.0 2.2 38 67-112 47-84 (376)
115 1kag_A SKI, shikimate kinase I 72.1 1.7 5.9E-05 36.8 2.2 25 69-97 4-28 (173)
116 2qmh_A HPR kinase/phosphorylas 72.0 1.4 4.9E-05 42.0 1.8 40 68-111 33-72 (205)
117 1gvn_B Zeta; postsegregational 71.9 2.5 8.4E-05 40.5 3.5 27 67-97 31-57 (287)
118 1qf9_A UMP/CMP kinase, protein 71.9 2.5 8.7E-05 35.8 3.2 26 68-97 5-30 (194)
119 1osn_A Thymidine kinase, VZV-T 71.8 1.4 4.8E-05 44.5 1.8 39 67-112 10-49 (341)
120 2obn_A Hypothetical protein; s 71.4 3.6 0.00012 41.8 4.7 87 389-493 250-339 (349)
121 1rz3_A Hypothetical protein rb 71.3 4 0.00014 36.3 4.4 28 67-98 20-47 (201)
122 3ec2_A DNA replication protein 71.1 2.3 7.7E-05 36.7 2.7 34 67-104 36-69 (180)
123 2p67_A LAO/AO transport system 71.1 4.2 0.00014 39.7 4.9 43 67-114 54-96 (341)
124 1ukz_A Uridylate kinase; trans 71.0 2 7E-05 37.5 2.5 27 67-97 13-39 (203)
125 1e2k_A Thymidine kinase; trans 70.1 1.5 5E-05 44.1 1.5 39 67-113 2-40 (331)
126 1y63_A LMAJ004144AAA protein; 70.0 2.4 8.2E-05 37.1 2.7 26 67-96 8-33 (184)
127 2jaq_A Deoxyguanosine kinase; 70.0 2.5 8.4E-05 36.4 2.7 24 71-98 2-25 (205)
128 3t61_A Gluconokinase; PSI-biol 69.9 2.5 8.6E-05 37.1 2.8 26 68-97 17-42 (202)
129 3tr0_A Guanylate kinase, GMP k 69.8 3.1 0.00011 36.0 3.4 27 67-97 5-31 (205)
130 3p32_A Probable GTPase RV1496/ 69.4 4.7 0.00016 39.5 4.9 42 67-113 77-118 (355)
131 2iyv_A Shikimate kinase, SK; t 69.3 2.3 8E-05 36.5 2.4 25 70-98 3-27 (184)
132 1zp6_A Hypothetical protein AT 68.6 2.6 8.9E-05 36.3 2.5 25 67-95 7-31 (191)
133 1aky_A Adenylate kinase; ATP:A 68.3 2.8 9.5E-05 37.4 2.8 26 68-97 3-28 (220)
134 1jny_A EF-1-alpha, elongation 68.3 11 0.00039 37.9 7.5 58 437-496 130-200 (435)
135 2dr3_A UPF0273 protein PH0284; 67.9 5.6 0.00019 35.2 4.6 35 67-106 21-55 (247)
136 3a8t_A Adenylate isopentenyltr 67.7 1.7 5.7E-05 44.1 1.3 28 67-98 38-65 (339)
137 1zak_A Adenylate kinase; ATP:A 67.1 3 0.0001 37.3 2.7 28 67-98 3-30 (222)
138 2p5t_B PEZT; postsegregational 67.1 2.8 9.6E-05 38.8 2.6 27 67-97 30-56 (253)
139 2cdn_A Adenylate kinase; phosp 66.9 3.8 0.00013 35.9 3.3 27 67-97 18-44 (201)
140 2w0m_A SSO2452; RECA, SSPF, un 66.8 5.6 0.00019 34.5 4.4 27 67-97 21-47 (235)
141 3c8u_A Fructokinase; YP_612366 66.7 4.4 0.00015 36.1 3.7 28 67-98 20-47 (208)
142 3izq_1 HBS1P, elongation facto 66.3 21 0.00071 38.2 9.4 94 377-496 254-359 (611)
143 1zl0_A Hypothetical protein PA 66.1 7.3 0.00025 38.7 5.5 62 440-505 35-102 (311)
144 1p6x_A Thymidine kinase; P-loo 66.1 2 6.8E-05 43.2 1.5 40 67-113 5-44 (334)
145 2efe_B Small GTP-binding prote 66.1 7.4 0.00025 32.3 4.8 51 437-488 101-156 (181)
146 1p5z_B DCK, deoxycytidine kina 65.9 2.2 7.5E-05 39.4 1.7 36 67-112 22-57 (263)
147 3be4_A Adenylate kinase; malar 65.7 2.7 9.2E-05 37.7 2.1 27 67-97 3-29 (217)
148 3fst_A 5,10-methylenetetrahydr 65.4 3.9 0.00013 40.6 3.4 104 364-481 178-293 (304)
149 3j2k_7 ERF3, eukaryotic polype 65.3 12 0.00041 38.0 7.0 43 438-480 142-193 (439)
150 2whl_A Beta-mannanase, baman5; 65.3 13 0.00046 34.8 6.9 54 439-493 33-90 (294)
151 2ze6_A Isopentenyl transferase 65.1 2.9 0.0001 39.0 2.4 24 70-97 2-25 (253)
152 2ce2_X GTPase HRAS; signaling 63.6 14 0.00048 29.6 5.9 38 449-487 107-145 (166)
153 1ojl_A Transcriptional regulat 63.2 1.3 4.4E-05 42.7 -0.5 153 69-245 25-227 (304)
154 3lw7_A Adenylate kinase relate 63.2 3.5 0.00012 34.0 2.2 20 70-93 2-21 (179)
155 3foz_A TRNA delta(2)-isopenten 62.7 3.4 0.00012 41.6 2.5 28 67-98 8-35 (316)
156 1u94_A RECA protein, recombina 62.6 5.6 0.00019 39.8 4.0 35 67-106 61-95 (356)
157 1w36_D RECD, exodeoxyribonucle 62.5 5.4 0.00018 42.3 4.0 27 68-98 163-189 (608)
158 3exa_A TRNA delta(2)-isopenten 61.3 3.2 0.00011 42.0 2.0 26 69-98 3-28 (322)
159 3sr3_A Microcin immunity prote 61.2 6.7 0.00023 39.1 4.2 63 439-505 33-101 (336)
160 2nzj_A GTP-binding protein REM 61.0 14 0.00047 30.4 5.5 50 437-487 94-149 (175)
161 3kws_A Putative sugar isomeras 61.0 47 0.0016 30.4 9.6 63 425-488 92-167 (287)
162 1ak2_A Adenylate kinase isoenz 60.9 5.1 0.00018 36.3 3.1 27 67-97 14-40 (233)
163 4e22_A Cytidylate kinase; P-lo 60.7 4.5 0.00015 37.6 2.7 28 67-98 25-52 (252)
164 2gk6_A Regulator of nonsense t 60.5 6.9 0.00024 41.4 4.4 35 69-107 195-229 (624)
165 2hk0_A D-psicose 3-epimerase; 60.3 35 0.0012 31.8 8.7 63 426-489 96-173 (309)
166 1zd8_A GTP:AMP phosphotransfer 60.1 4.1 0.00014 36.6 2.3 26 68-97 6-31 (227)
167 1htw_A HI0065; nucleotide-bind 60.1 4.7 0.00016 35.6 2.6 27 67-97 31-57 (158)
168 1bqc_A Protein (beta-mannanase 59.6 17 0.0006 34.1 6.6 52 441-493 36-91 (302)
169 3asz_A Uridine kinase; cytidin 59.6 5.5 0.00019 34.9 3.0 27 67-97 4-30 (211)
170 1u0l_A Probable GTPase ENGC; p 59.6 16 0.00054 35.0 6.4 49 438-487 103-153 (301)
171 4e5s_A MCCFLIKE protein (BA_56 59.4 8.5 0.00029 38.3 4.6 67 428-505 28-100 (331)
172 2obn_A Hypothetical protein; s 58.7 8 0.00027 39.3 4.3 36 68-107 151-186 (349)
173 1ub3_A Aldolase protein; schif 58.3 9.7 0.00033 36.1 4.6 78 393-495 85-162 (220)
174 4h1h_A LMO1638 protein; MCCF-l 58.3 9 0.00031 37.9 4.5 60 442-505 35-100 (327)
175 3upu_A ATP-dependent DNA helic 58.3 4.8 0.00017 40.7 2.7 33 71-108 47-79 (459)
176 1f60_A Elongation factor EEF1A 58.2 20 0.00069 36.6 7.2 52 438-489 132-194 (458)
177 2yc2_C IFT27, small RAB-relate 58.2 11 0.00037 32.1 4.5 54 436-490 112-174 (208)
178 3c5h_A Glucocorticoid receptor 58.0 17 0.00059 33.5 6.1 38 449-487 197-235 (255)
179 1via_A Shikimate kinase; struc 57.9 3.6 0.00012 35.2 1.5 24 71-98 6-29 (175)
180 1ly1_A Polynucleotide kinase; 57.5 5 0.00017 33.7 2.2 22 70-95 3-24 (181)
181 2fu5_C RAS-related protein RAB 57.5 8.5 0.00029 32.2 3.7 51 437-488 97-152 (183)
182 3tkl_A RAS-related protein RAB 57.4 15 0.00053 30.9 5.3 49 438-487 106-159 (196)
183 1x6v_B Bifunctional 3'-phospho 57.2 8.7 0.0003 41.8 4.6 36 68-108 51-86 (630)
184 2gf9_A RAS-related protein RAB 57.0 7.8 0.00027 33.0 3.4 50 437-487 111-165 (189)
185 3bc1_A RAS-related protein RAB 56.2 12 0.0004 31.2 4.3 49 438-487 111-165 (195)
186 3c5c_A RAS-like protein 12; GD 56.1 8.3 0.00029 33.1 3.5 39 449-488 126-166 (187)
187 2qt1_A Nicotinamide riboside k 56.0 5.2 0.00018 35.2 2.2 27 67-97 19-45 (207)
188 3eph_A TRNA isopentenyltransfe 55.9 5.4 0.00019 41.4 2.6 25 70-98 3-27 (409)
189 1g16_A RAS-related protein SEC 55.3 15 0.00053 29.8 4.8 50 438-488 93-146 (170)
190 1g8f_A Sulfate adenylyltransfe 55.2 6.9 0.00024 41.4 3.3 27 68-98 394-420 (511)
191 3ngj_A Deoxyribose-phosphate a 55.1 13 0.00043 36.2 4.9 78 393-495 109-186 (239)
192 2bov_A RAla, RAS-related prote 54.7 17 0.00059 30.8 5.2 38 449-487 118-157 (206)
193 1wms_A RAB-9, RAB9, RAS-relate 54.7 19 0.00066 29.7 5.3 40 448-488 114-155 (177)
194 3q85_A GTP-binding protein REM 54.4 15 0.00053 30.0 4.7 51 436-487 91-147 (169)
195 1z0f_A RAB14, member RAS oncog 54.3 11 0.00036 31.1 3.7 49 439-488 109-159 (179)
196 1vht_A Dephospho-COA kinase; s 54.3 6.3 0.00022 34.9 2.5 23 69-95 4-26 (218)
197 3ea0_A ATPase, para family; al 53.8 36 0.0012 30.1 7.3 79 363-481 119-200 (245)
198 1rj9_A FTSY, signal recognitio 53.7 13 0.00044 36.3 4.7 36 67-107 100-135 (304)
199 1xp8_A RECA protein, recombina 53.7 13 0.00044 37.4 4.9 45 67-116 72-116 (366)
200 2g0t_A Conserved hypothetical 53.6 14 0.00046 37.6 5.0 37 67-107 167-203 (350)
201 3q72_A GTP-binding protein RAD 53.6 24 0.00081 28.8 5.7 51 436-487 88-144 (166)
202 3tla_A MCCF; serine protease, 53.5 9 0.00031 39.0 3.7 62 440-505 64-131 (371)
203 1z06_A RAS-related protein RAB 53.4 18 0.0006 30.7 5.0 41 448-489 125-167 (189)
204 1c1y_A RAS-related protein RAP 53.0 20 0.00068 29.1 5.1 38 449-487 107-147 (167)
205 2qw5_A Xylose isomerase-like T 52.9 35 0.0012 32.3 7.5 87 385-488 73-185 (335)
206 3c8f_A Pyruvate formate-lyase 52.7 26 0.00089 30.9 6.2 55 438-492 148-205 (245)
207 3d3q_A TRNA delta(2)-isopenten 52.4 6 0.00021 39.9 2.2 25 70-98 8-32 (340)
208 1ex7_A Guanylate kinase; subst 52.3 7.4 0.00025 35.6 2.6 43 70-116 2-44 (186)
209 1q3t_A Cytidylate kinase; nucl 52.3 8.6 0.00029 34.9 3.1 28 66-97 13-40 (236)
210 3con_A GTPase NRAS; structural 52.3 23 0.00078 29.9 5.5 39 449-488 125-164 (190)
211 2eyu_A Twitching motility prot 52.3 8.4 0.00029 36.5 3.1 34 59-97 16-49 (261)
212 2zts_A Putative uncharacterize 52.1 12 0.00041 33.0 3.9 36 67-107 28-64 (251)
213 1qtw_A Endonuclease IV; DNA re 52.1 73 0.0025 28.7 9.2 67 424-491 76-150 (285)
214 3lk7_A UDP-N-acetylmuramoylala 52.1 10 0.00035 38.5 3.8 31 69-106 112-142 (451)
215 3b9q_A Chloroplast SRP recepto 52.0 12 0.00041 36.4 4.2 35 67-106 98-132 (302)
216 1njg_A DNA polymerase III subu 51.8 8.5 0.00029 32.7 2.8 26 69-98 45-70 (250)
217 4a0g_A Adenosylmethionine-8-am 51.6 5.6 0.00019 44.1 2.0 29 69-101 34-62 (831)
218 2ewv_A Twitching motility prot 51.6 13 0.00043 37.1 4.4 41 67-112 134-174 (372)
219 2eh6_A Acoat, acetylornithine 51.6 47 0.0016 31.0 8.0 27 463-490 190-216 (375)
220 1d2n_A N-ethylmaleimide-sensit 51.4 7.7 0.00026 35.7 2.6 27 67-97 62-88 (272)
221 1m8p_A Sulfate adenylyltransfe 51.2 11 0.00036 40.2 4.0 34 67-105 394-428 (573)
222 2yv5_A YJEQ protein; hydrolase 51.1 25 0.00086 33.8 6.3 48 438-486 98-148 (302)
223 2jeo_A Uridine-cytidine kinase 51.0 9 0.00031 35.0 3.0 27 67-97 23-49 (245)
224 2w58_A DNAI, primosome compone 50.8 9.2 0.00031 33.3 2.9 30 70-104 55-84 (202)
225 3hr8_A Protein RECA; alpha and 50.7 14 0.00049 37.1 4.7 78 31-115 15-102 (356)
226 2wjy_A Regulator of nonsense t 50.7 12 0.00041 41.5 4.4 35 69-107 371-405 (800)
227 1wky_A Endo-beta-1,4-mannanase 50.6 32 0.0011 35.4 7.3 54 439-493 41-98 (464)
228 2y8e_A RAB-protein 6, GH09086P 50.5 14 0.00049 30.3 3.9 39 448-487 117-157 (179)
229 3clv_A RAB5 protein, putative; 50.3 21 0.00073 29.6 5.0 51 437-488 133-185 (208)
230 3e70_C DPA, signal recognition 50.2 14 0.00048 36.5 4.4 38 66-108 126-163 (328)
231 1w78_A FOLC bifunctional prote 49.9 13 0.00043 37.2 4.1 32 68-106 48-79 (422)
232 3qc0_A Sugar isomerase; TIM ba 49.8 75 0.0026 28.4 8.8 62 426-488 72-144 (275)
233 1vcv_A Probable deoxyribose-ph 49.7 17 0.00059 34.7 4.8 73 393-490 80-152 (226)
234 1s96_A Guanylate kinase, GMP k 49.6 8.7 0.0003 35.5 2.7 27 67-97 14-40 (219)
235 3apt_A Methylenetetrahydrofola 49.5 14 0.00047 36.6 4.2 104 364-481 175-290 (310)
236 3eag_A UDP-N-acetylmuramate:L- 49.5 9.1 0.00031 37.1 2.9 31 69-106 108-138 (326)
237 3nwj_A ATSK2; P loop, shikimat 49.4 8.1 0.00028 36.7 2.5 26 69-98 48-73 (250)
238 1zuh_A Shikimate kinase; alpha 49.3 6.1 0.00021 33.5 1.5 25 70-98 8-32 (168)
239 3nrs_A Dihydrofolate:folylpoly 49.3 11 0.00038 38.2 3.6 40 60-106 42-82 (437)
240 3tlx_A Adenylate kinase 2; str 49.2 9.5 0.00033 35.2 2.9 27 67-97 27-53 (243)
241 3r7w_A Gtpase1, GTP-binding pr 49.0 23 0.0008 33.8 5.7 54 440-493 103-168 (307)
242 2a5j_A RAS-related protein RAB 48.8 18 0.0006 30.9 4.3 51 437-488 110-165 (191)
243 3avx_A Elongation factor TS, e 48.8 32 0.0011 40.8 7.6 83 377-490 368-461 (1289)
244 1r2q_A RAS-related protein RAB 48.8 12 0.00042 30.3 3.2 51 436-487 94-149 (170)
245 3vni_A Xylose isomerase domain 48.8 47 0.0016 30.4 7.4 64 424-488 75-153 (294)
246 3uk6_A RUVB-like 2; hexameric 48.4 8.4 0.00029 36.6 2.4 48 47-98 46-95 (368)
247 4b3f_X DNA-binding protein smu 48.3 8.9 0.0003 40.6 2.8 33 71-108 207-239 (646)
248 3u0h_A Xylose isomerase domain 48.1 28 0.00094 31.4 5.7 56 431-488 78-143 (281)
249 3kkq_A RAS-related protein M-R 47.8 39 0.0014 28.1 6.3 40 447-487 120-161 (183)
250 1i60_A IOLI protein; beta barr 47.7 50 0.0017 29.6 7.3 63 428-491 75-147 (278)
251 3tr5_A RF-3, peptide chain rel 47.7 22 0.00075 37.4 5.7 41 441-481 125-165 (528)
252 2g6b_A RAS-related protein RAB 47.4 30 0.001 28.5 5.4 50 438-488 101-155 (180)
253 1nlf_A Regulatory protein REPA 47.3 17 0.00058 33.8 4.3 27 67-97 28-54 (279)
254 1u8z_A RAS-related protein RAL 47.2 17 0.00058 29.3 3.8 38 449-487 108-147 (168)
255 2if2_A Dephospho-COA kinase; a 47.1 9 0.00031 33.4 2.2 21 71-95 3-23 (204)
256 2bdt_A BH3686; alpha-beta prot 47.0 8 0.00027 33.4 1.9 25 69-97 2-26 (189)
257 1tz9_A Mannonate dehydratase; 47.0 25 0.00084 34.3 5.6 29 432-461 90-118 (367)
258 2xzl_A ATP-dependent helicase 47.0 14 0.0005 40.8 4.3 36 69-108 375-410 (802)
259 3cqj_A L-ribulose-5-phosphate 46.8 65 0.0022 29.6 8.1 63 426-489 97-169 (295)
260 2kjq_A DNAA-related protein; s 46.7 12 0.00041 32.3 3.0 39 68-112 35-73 (149)
261 2ged_A SR-beta, signal recogni 46.7 33 0.0011 28.9 5.7 26 449-474 155-180 (193)
262 3cwq_A Para family chromosome 46.5 61 0.0021 29.0 7.7 83 361-481 66-151 (209)
263 3t5g_A GTP-binding protein RHE 46.4 23 0.00078 29.5 4.6 40 447-487 108-149 (181)
264 2cvh_A DNA repair and recombin 46.3 11 0.00038 32.7 2.7 25 67-95 18-42 (220)
265 3hp4_A GDSL-esterase; psychrot 46.0 54 0.0019 27.4 6.9 115 348-492 25-147 (185)
266 1p9r_A General secretion pathw 46.0 13 0.00046 38.0 3.6 40 67-112 165-204 (418)
267 3ayv_A Putative uncharacterize 46.0 76 0.0026 28.4 8.3 65 424-489 63-139 (254)
268 1jbk_A CLPB protein; beta barr 45.8 7.6 0.00026 32.0 1.5 28 67-98 41-68 (195)
269 2wsm_A Hydrogenase expression/ 45.7 16 0.00055 31.9 3.7 25 70-98 31-55 (221)
270 1n0w_A DNA repair protein RAD5 45.4 9.5 0.00032 33.7 2.1 26 67-96 22-47 (243)
271 2f7s_A C25KG, RAS-related prot 45.2 25 0.00086 30.5 4.8 51 436-487 123-179 (217)
272 2vp4_A Deoxynucleoside kinase; 45.2 9.9 0.00034 34.5 2.3 36 67-112 18-53 (230)
273 1z08_A RAS-related protein RAB 45.1 17 0.00058 29.7 3.5 34 448-481 109-144 (170)
274 2x7v_A Probable endonuclease 4 45.0 86 0.003 28.3 8.5 88 385-491 55-149 (287)
275 1z0j_A RAB-22, RAS-related pro 45.0 30 0.001 28.1 4.9 39 448-487 109-149 (170)
276 3crm_A TRNA delta(2)-isopenten 44.9 8.3 0.00028 38.6 1.9 26 69-98 5-30 (323)
277 2og2_A Putative signal recogni 44.8 17 0.00059 36.5 4.2 35 67-106 155-189 (359)
278 3ake_A Cytidylate kinase; CMP 44.5 8.1 0.00028 33.4 1.5 23 71-97 4-26 (208)
279 3cph_A RAS-related protein SEC 44.4 26 0.00089 30.0 4.7 50 438-488 110-163 (213)
280 2qby_B CDC6 homolog 3, cell di 44.4 10 0.00034 36.0 2.3 48 47-98 22-70 (384)
281 2fg5_A RAB-22B, RAS-related pr 44.3 15 0.00052 31.4 3.2 49 438-487 113-166 (192)
282 3cpj_B GTP-binding protein YPT 44.2 12 0.00041 33.0 2.7 49 438-487 103-156 (223)
283 3tva_A Xylose isomerase domain 44.2 42 0.0014 30.7 6.3 58 431-489 96-161 (290)
284 2ehv_A Hypothetical protein PH 44.2 22 0.00076 31.3 4.4 25 67-95 28-52 (251)
285 2qby_A CDC6 homolog 1, cell di 43.9 27 0.00091 32.6 5.0 28 67-98 43-70 (386)
286 1uf9_A TT1252 protein; P-loop, 43.7 13 0.00045 31.9 2.8 23 69-95 8-30 (203)
287 1hyq_A MIND, cell division inh 43.7 51 0.0017 29.7 6.8 37 443-481 154-191 (263)
288 4gp7_A Metallophosphoesterase; 43.4 8 0.00028 33.6 1.3 22 67-92 7-28 (171)
289 3tqc_A Pantothenate kinase; bi 43.3 19 0.00065 35.7 4.2 37 80-140 99-135 (321)
290 1l1s_A Hypothetical protein MT 43.3 25 0.00087 28.8 4.3 72 426-502 12-88 (113)
291 2pt5_A Shikimate kinase, SK; a 43.0 8.8 0.0003 32.2 1.5 23 71-97 2-24 (168)
292 2a9k_A RAS-related protein RAL 43.0 18 0.00061 29.9 3.3 38 449-487 122-161 (187)
293 3sjy_A Translation initiation 42.9 37 0.0013 33.7 6.2 35 438-472 116-151 (403)
294 1z2a_A RAS-related protein RAB 42.8 23 0.00078 28.7 3.9 49 438-487 95-147 (168)
295 2p65_A Hypothetical protein PF 42.7 6.8 0.00023 32.5 0.7 28 67-98 41-68 (187)
296 3k1j_A LON protease, ATP-depen 42.7 4.6 0.00016 42.5 -0.4 43 47-98 43-85 (604)
297 3lmz_A Putative sugar isomeras 42.4 30 0.001 31.3 5.1 48 436-489 88-135 (257)
298 2atx_A Small GTP binding prote 42.4 55 0.0019 27.6 6.4 48 441-488 111-174 (194)
299 2gks_A Bifunctional SAT/APS ki 42.3 18 0.0006 38.3 3.9 33 68-105 371-403 (546)
300 2vf7_A UVRA2, excinuclease ABC 42.3 8 0.00027 43.4 1.4 22 67-92 34-55 (842)
301 2f6r_A COA synthase, bifunctio 41.8 15 0.0005 34.9 3.0 23 68-94 74-96 (281)
302 2qgz_A Helicase loader, putati 41.7 14 0.00049 35.6 2.9 33 69-105 152-184 (308)
303 3ez9_A Para; DNA binding, wing 41.5 74 0.0025 31.3 8.1 89 362-481 247-340 (403)
304 1cr0_A DNA primase/helicase; R 41.5 34 0.0011 31.9 5.3 27 67-97 33-59 (296)
305 1kao_A RAP2A; GTP-binding prot 41.4 24 0.00083 28.3 3.9 39 448-487 106-146 (167)
306 2a5y_B CED-4; apoptosis; HET: 41.2 16 0.00056 37.6 3.5 69 39-113 123-196 (549)
307 1odf_A YGR205W, hypothetical 3 41.0 17 0.00056 35.2 3.2 28 67-98 29-56 (290)
308 2fn4_A P23, RAS-related protei 40.9 24 0.00081 29.0 3.8 40 447-487 111-152 (181)
309 1z6g_A Guanylate kinase; struc 40.9 12 0.00042 33.8 2.2 25 67-95 21-45 (218)
310 3kta_A Chromosome segregation 40.8 15 0.00052 31.3 2.7 24 71-98 28-51 (182)
311 3aez_A Pantothenate kinase; tr 40.7 25 0.00086 34.3 4.5 28 66-97 87-114 (312)
312 3syl_A Protein CBBX; photosynt 40.7 20 0.00068 33.1 3.6 31 67-102 65-95 (309)
313 2bcg_Y Protein YP2, GTP-bindin 40.7 30 0.001 29.7 4.5 40 447-487 110-151 (206)
314 3ndo_A Deoxyribose-phosphate a 40.7 31 0.0011 33.2 5.0 46 450-495 127-176 (231)
315 1uj2_A Uridine-cytidine kinase 40.5 8.8 0.0003 35.2 1.2 25 70-98 23-47 (252)
316 4dsu_A GTPase KRAS, isoform 2B 40.5 46 0.0016 27.5 5.6 39 448-487 107-146 (189)
317 3cny_A Inositol catabolism pro 40.4 1E+02 0.0036 28.0 8.4 58 431-489 84-163 (301)
318 1ydn_A Hydroxymethylglutaryl-C 40.3 55 0.0019 31.3 6.8 54 435-488 118-177 (295)
319 3aek_A Light-independent proto 40.3 67 0.0023 32.7 7.7 68 327-403 50-126 (437)
320 1ky3_A GTP-binding protein YPT 40.2 66 0.0022 26.3 6.4 38 449-487 117-158 (182)
321 2v1u_A Cell division control p 39.9 20 0.00069 33.5 3.6 28 67-98 42-69 (387)
322 1o5z_A Folylpolyglutamate synt 39.8 20 0.00068 36.4 3.7 39 68-114 51-89 (442)
323 3bh0_A DNAB-like replicative h 39.5 27 0.00092 33.6 4.5 64 27-97 26-92 (315)
324 3bbn_M Ribosomal protein S13; 39.3 7.7 0.00026 35.5 0.6 25 198-222 79-103 (145)
325 2zr9_A Protein RECA, recombina 39.2 30 0.001 34.3 4.9 36 67-107 59-94 (349)
326 1vi1_A Fatty acid/phospholipid 38.9 7.4 0.00025 39.0 0.4 26 335-360 280-312 (345)
327 2qul_A D-tagatose 3-epimerase; 38.5 65 0.0022 29.1 6.6 63 426-489 77-155 (290)
328 1jbw_A Folylpolyglutamate synt 38.3 24 0.00081 35.4 4.0 39 68-114 38-76 (428)
329 1zbd_A Rabphilin-3A; G protein 38.3 35 0.0012 29.1 4.5 50 438-488 98-152 (203)
330 2x5o_A UDP-N-acetylmuramoylala 38.2 24 0.00083 35.5 4.1 32 69-107 104-135 (439)
331 1sq5_A Pantothenate kinase; P- 38.1 20 0.00069 34.3 3.3 27 67-97 78-104 (308)
332 3tqf_A HPR(Ser) kinase; transf 37.9 17 0.00057 34.3 2.6 24 68-95 15-38 (181)
333 2c78_A Elongation factor TU-A; 37.9 46 0.0016 32.9 6.0 52 438-489 115-176 (405)
334 1p9l_A Dihydrodipicolinate red 37.7 38 0.0013 32.4 5.1 51 439-493 58-109 (245)
335 3oes_A GTPase rhebl1; small GT 37.6 32 0.0011 29.6 4.2 49 438-487 113-167 (201)
336 3cbq_A GTP-binding protein REM 37.5 50 0.0017 28.6 5.5 50 436-486 112-167 (195)
337 1k77_A EC1530, hypothetical pr 37.5 70 0.0024 28.5 6.6 56 432-488 80-145 (260)
338 2o52_A RAS-related protein RAB 37.4 20 0.00069 31.0 2.9 40 447-487 127-168 (200)
339 1ltq_A Polynucleotide kinase; 37.4 15 0.00051 34.1 2.2 23 70-96 3-25 (301)
340 2orv_A Thymidine kinase; TP4A 37.2 28 0.00095 33.7 4.1 46 67-119 17-62 (234)
341 2erx_A GTP-binding protein DI- 37.1 20 0.00067 29.1 2.7 38 449-487 108-147 (172)
342 1cke_A CK, MSSA, protein (cyti 37.0 12 0.00042 32.9 1.5 25 69-97 5-29 (227)
343 3hn7_A UDP-N-acetylmuramate-L- 36.8 20 0.00067 37.4 3.2 32 68-106 121-152 (524)
344 3czq_A Putative polyphosphate 36.6 11 0.00038 37.7 1.3 41 67-113 84-124 (304)
345 4djt_A GTP-binding nuclear pro 36.5 46 0.0016 28.8 5.1 45 442-487 109-155 (218)
346 4dhe_A Probable GTP-binding pr 36.3 51 0.0017 28.5 5.4 28 442-469 136-163 (223)
347 2grj_A Dephospho-COA kinase; T 36.1 16 0.00056 33.0 2.2 26 68-97 11-36 (192)
348 3r12_A Deoxyribose-phosphate a 36.1 63 0.0022 31.8 6.5 45 450-495 158-202 (260)
349 3fb4_A Adenylate kinase; psych 35.8 12 0.00043 32.8 1.3 22 72-97 3-24 (216)
350 4a74_A DNA repair and recombin 35.8 16 0.00054 31.9 2.0 26 67-96 23-48 (231)
351 1g3q_A MIND ATPase, cell divis 35.7 44 0.0015 29.5 4.9 25 441-465 153-178 (237)
352 3dx5_A Uncharacterized protein 35.7 79 0.0027 28.7 6.8 56 433-489 80-145 (286)
353 3e2i_A Thymidine kinase; Zn-bi 35.6 30 0.001 33.2 4.0 47 67-120 26-72 (219)
354 2oil_A CATX-8, RAS-related pro 35.4 34 0.0012 28.9 4.0 50 437-487 114-168 (193)
355 2r6a_A DNAB helicase, replicat 35.2 34 0.0011 34.6 4.6 37 58-98 191-228 (454)
356 1wb1_A Translation elongation 35.1 37 0.0013 35.0 4.9 50 439-489 114-171 (482)
357 3ghf_A Septum site-determining 35.1 38 0.0013 29.2 4.2 56 426-486 24-81 (120)
358 2e87_A Hypothetical protein PH 35.0 1E+02 0.0035 29.9 7.8 32 450-481 280-311 (357)
359 3zvl_A Bifunctional polynucleo 35.0 14 0.00049 37.1 1.8 27 67-97 256-282 (416)
360 1byi_A Dethiobiotin synthase; 35.0 65 0.0022 28.2 5.9 46 436-481 152-198 (224)
361 3obe_A Sugar phosphate isomera 35.0 84 0.0029 29.7 7.0 56 433-490 110-173 (305)
362 3bwd_D RAC-like GTP-binding pr 34.9 32 0.0011 28.4 3.7 38 450-487 112-161 (182)
363 2atv_A RERG, RAS-like estrogen 34.9 24 0.00084 30.1 3.0 39 449-488 131-171 (196)
364 3aal_A Probable endonuclease 4 34.7 1.4E+02 0.0047 27.7 8.3 64 425-489 81-152 (303)
365 3bg3_A Pyruvate carboxylase, m 34.6 76 0.0026 35.2 7.5 53 436-488 223-283 (718)
366 1x3s_A RAS-related protein RAB 34.6 46 0.0016 27.8 4.7 52 436-488 103-159 (195)
367 2chg_A Replication factor C sm 34.4 15 0.00051 31.0 1.6 24 71-98 40-63 (226)
368 1nrj_B SR-beta, signal recogni 34.4 69 0.0024 27.7 5.9 32 431-462 101-132 (218)
369 1d2e_A Elongation factor TU (E 34.4 45 0.0015 33.1 5.2 52 438-489 106-167 (397)
370 3pih_A Uvrabc system protein A 34.3 15 0.00051 41.7 1.9 26 67-96 22-47 (916)
371 1tv8_A MOAA, molybdenum cofact 34.1 1E+02 0.0035 29.4 7.5 49 438-487 147-195 (340)
372 2bme_A RAB4A, RAS-related prot 34.1 23 0.0008 29.5 2.7 46 442-488 107-154 (186)
373 1jjv_A Dephospho-COA kinase; P 34.1 10 0.00035 33.2 0.5 21 71-95 4-24 (206)
374 1e8c_A UDP-N-acetylmuramoylala 34.0 25 0.00084 36.1 3.4 32 68-106 107-138 (498)
375 2yhs_A FTSY, cell division pro 33.9 31 0.0011 36.7 4.2 36 67-107 291-326 (503)
376 2q6t_A DNAB replication FORK h 33.7 39 0.0013 34.1 4.7 36 59-98 189-225 (444)
377 2cw6_A Hydroxymethylglutaryl-C 33.6 1.1E+02 0.0038 29.4 7.8 56 433-488 117-178 (298)
378 4hf7_A Putative acylhydrolase; 33.6 57 0.002 28.6 5.3 46 436-481 104-162 (209)
379 2j0v_A RAC-like GTP-binding pr 33.5 38 0.0013 29.2 4.1 48 441-488 102-161 (212)
380 1svm_A Large T antigen; AAA+ f 33.4 24 0.00083 35.7 3.2 28 66-97 166-193 (377)
381 2bbw_A Adenylate kinase 4, AK4 33.1 14 0.00049 33.5 1.3 27 68-98 26-52 (246)
382 4dzz_A Plasmid partitioning pr 32.9 40 0.0014 28.9 4.1 87 359-481 72-160 (206)
383 2ygr_A Uvrabc system protein A 32.9 14 0.00049 42.4 1.6 24 67-94 44-67 (993)
384 3r20_A Cytidylate kinase; stru 32.9 15 0.00052 34.8 1.5 26 69-98 9-34 (233)
385 2hxs_A RAB-26, RAS-related pro 32.8 28 0.00096 28.7 3.0 37 450-487 114-153 (178)
386 2elf_A Protein translation elo 32.4 49 0.0017 32.9 5.2 41 438-479 99-145 (370)
387 2gco_A H9, RHO-related GTP-bin 32.2 89 0.0031 26.8 6.2 48 441-488 118-181 (201)
388 4hv4_A UDP-N-acetylmuramate--L 32.2 28 0.00096 35.9 3.5 30 69-105 122-151 (494)
389 3ihw_A Centg3; RAS, centaurin, 32.1 77 0.0026 27.1 5.8 58 436-495 101-166 (184)
390 2q02_A Putative cytoplasmic pr 32.1 1.1E+02 0.0038 27.3 7.0 52 437-489 85-142 (272)
391 3dl0_A Adenylate kinase; phosp 31.9 13 0.00046 32.7 0.9 22 72-97 3-24 (216)
392 1h4p_A Glucan 1,3-beta-glucosi 31.6 82 0.0028 31.7 6.7 54 440-494 76-141 (408)
393 2axn_A 6-phosphofructo-2-kinas 31.5 35 0.0012 35.7 4.1 33 68-105 34-66 (520)
394 2wtz_A UDP-N-acetylmuramoyl-L- 31.4 28 0.00097 36.2 3.4 32 68-106 145-176 (535)
395 1j6u_A UDP-N-acetylmuramate-al 31.4 29 0.001 35.4 3.4 31 69-106 114-144 (469)
396 1q57_A DNA primase/helicase; d 31.2 30 0.001 35.3 3.4 29 66-98 239-267 (503)
397 3iby_A Ferrous iron transport 31.2 28 0.00096 32.6 3.0 44 443-487 103-147 (256)
398 1zo1_I IF2, translation initia 31.2 44 0.0015 35.2 4.8 22 441-462 94-115 (501)
399 2r6f_A Excinuclease ABC subuni 31.1 16 0.00056 41.9 1.6 24 67-94 42-65 (972)
400 3ll9_A Isopentenyl phosphate k 31.0 17 0.00057 34.9 1.4 14 330-343 42-56 (269)
401 3l44_A Glutamate-1-semialdehyd 31.0 1.4E+02 0.0049 28.7 8.0 26 464-490 221-246 (434)
402 3bgw_A DNAB-like replicative h 31.0 42 0.0014 34.3 4.5 43 58-105 185-228 (444)
403 1e4v_A Adenylate kinase; trans 30.6 17 0.00058 32.2 1.3 22 72-97 3-24 (214)
404 2gza_A Type IV secretion syste 30.6 18 0.00062 35.7 1.7 27 67-97 173-199 (361)
405 2lf6_A Effector protein hopab1 30.2 50 0.0017 28.6 4.1 37 156-212 40-76 (101)
406 3dz8_A RAS-related protein RAB 30.1 56 0.0019 27.7 4.5 55 438-495 113-172 (191)
407 3l23_A Sugar phosphate isomera 30.0 1.5E+02 0.0052 27.8 7.9 56 433-489 104-168 (303)
408 3tw8_B RAS-related protein RAB 30.0 59 0.002 26.6 4.5 49 438-487 99-151 (181)
409 2ew1_A RAS-related protein RAB 30.0 36 0.0012 29.9 3.4 40 447-487 128-169 (201)
410 2hup_A RAS-related protein RAB 30.0 64 0.0022 27.9 4.9 52 437-488 118-174 (201)
411 4a1f_A DNAB helicase, replicat 30.0 47 0.0016 33.2 4.5 42 58-104 34-76 (338)
412 3fdi_A Uncharacterized protein 30.0 17 0.00056 33.0 1.2 25 70-98 7-31 (201)
413 3ewb_X 2-isopropylmalate synth 30.0 1.3E+02 0.0044 29.3 7.6 57 433-489 117-173 (293)
414 1nij_A Hypothetical protein YJ 29.9 20 0.00069 34.6 1.8 37 71-116 6-42 (318)
415 1fnn_A CDC6P, cell division co 29.8 27 0.00092 32.9 2.7 23 71-97 46-68 (389)
416 3nra_A Aspartate aminotransfer 29.8 1.3E+02 0.0045 28.2 7.4 45 450-495 179-227 (407)
417 2gf0_A GTP-binding protein DI- 29.7 53 0.0018 27.6 4.2 38 449-487 113-151 (199)
418 4eys_A MCCC family protein; MC 29.7 40 0.0014 33.7 4.0 61 439-503 27-93 (346)
419 3jug_A Beta-mannanase; TIM-bar 29.7 1E+02 0.0036 30.5 7.0 53 440-493 57-113 (345)
420 3gj0_A GTP-binding nuclear pro 29.7 19 0.00064 31.5 1.5 50 437-487 104-155 (221)
421 2f1r_A Molybdopterin-guanine d 29.6 19 0.00065 32.2 1.5 30 70-104 3-32 (171)
422 3pqc_A Probable GTP-binding pr 29.6 43 0.0015 27.9 3.6 45 443-487 126-174 (195)
423 2p5s_A RAS and EF-hand domain 29.6 63 0.0022 27.6 4.8 44 444-488 127-178 (199)
424 1nvm_A HOA, 4-hydroxy-2-oxoval 29.6 89 0.0031 30.8 6.4 52 437-488 120-171 (345)
425 2zqe_A MUTS2 protein; alpha/be 29.3 2E+02 0.0068 23.1 7.4 64 432-497 14-77 (83)
426 2xdq_A Light-independent proto 29.2 19 0.00067 36.5 1.7 112 296-456 14-134 (460)
427 3ijp_A DHPR, dihydrodipicolina 29.2 42 0.0014 33.1 4.0 47 440-492 102-148 (288)
428 2h5e_A Peptide chain release f 29.0 59 0.002 34.2 5.3 44 438-481 122-165 (529)
429 3p6l_A Sugar phosphate isomera 29.0 62 0.0021 29.1 4.8 47 437-489 91-137 (262)
430 1wi9_A Protein C20ORF116 homol 29.0 28 0.00096 28.6 2.2 25 21-45 14-38 (72)
431 2nx9_A Oxaloacetate decarboxyl 28.8 1E+02 0.0035 32.3 7.0 51 437-488 127-180 (464)
432 3qxb_A Putative xylose isomera 28.8 57 0.002 30.5 4.7 63 425-487 102-179 (316)
433 2xb4_A Adenylate kinase; ATP-b 28.8 20 0.00068 32.3 1.5 23 71-97 2-24 (223)
434 1p3d_A UDP-N-acetylmuramate--a 28.6 35 0.0012 34.7 3.4 29 69-104 118-146 (475)
435 1n7k_A Deoxyribose-phosphate a 28.4 1.1E+02 0.0037 29.4 6.6 55 438-494 121-177 (234)
436 3tif_A Uncharacterized ABC tra 28.0 25 0.00084 32.7 2.0 21 67-91 29-49 (235)
437 1ek0_A Protein (GTP-binding pr 27.8 34 0.0012 27.6 2.6 39 448-487 106-149 (170)
438 1znw_A Guanylate kinase, GMP k 27.8 31 0.0011 30.5 2.6 26 67-96 18-43 (207)
439 2qz4_A Paraplegin; AAA+, SPG7, 27.7 22 0.00074 31.8 1.5 25 69-97 39-63 (262)
440 1s1m_A CTP synthase; CTP synth 27.7 49 0.0017 35.5 4.5 40 70-112 4-43 (545)
441 2z43_A DNA repair and recombin 27.6 37 0.0013 32.7 3.2 27 67-97 105-131 (324)
442 3oa3_A Aldolase; structural ge 27.5 1.5E+02 0.0052 29.5 7.7 31 464-494 186-216 (288)
443 2iwr_A Centaurin gamma 1; ANK 27.5 76 0.0026 26.2 4.8 40 442-481 97-144 (178)
444 3t5d_A Septin-7; GTP-binding p 27.4 85 0.0029 29.1 5.6 37 444-481 139-179 (274)
445 1g7s_A Translation initiation 27.4 70 0.0024 34.2 5.6 20 442-461 114-133 (594)
446 3f9t_A TDC, L-tyrosine decarbo 27.3 1.3E+02 0.0046 27.6 6.8 44 450-494 171-215 (397)
447 4bas_A ADP-ribosylation factor 27.2 45 0.0015 28.1 3.3 16 450-465 127-142 (199)
448 3qd7_X Uncharacterized protein 27.1 2E+02 0.0068 25.4 7.6 65 433-497 58-126 (137)
449 2am1_A SP protein, UDP-N-acety 27.0 39 0.0014 34.0 3.4 30 67-103 98-127 (454)
450 3fvq_A Fe(3+) IONS import ATP- 27.0 39 0.0013 34.1 3.4 23 67-93 28-50 (359)
451 4f3y_A DHPR, dihydrodipicolina 26.9 45 0.0015 32.3 3.7 48 439-492 86-133 (272)
452 2f00_A UDP-N-acetylmuramate--L 26.9 39 0.0013 34.6 3.4 29 69-104 119-147 (491)
453 3ble_A Citramalate synthase fr 26.9 69 0.0024 31.7 5.1 55 434-488 134-191 (337)
454 1sxj_C Activator 1 40 kDa subu 26.9 22 0.00077 33.8 1.6 23 72-98 49-71 (340)
455 1jub_A Dihydroorotate dehydrog 26.8 1.3E+02 0.0043 28.6 6.8 50 438-489 145-195 (311)
456 2j1l_A RHO-related GTP-binding 26.8 95 0.0033 27.1 5.5 45 443-487 129-189 (214)
457 2www_A Methylmalonic aciduria 26.7 70 0.0024 31.4 5.1 43 67-114 72-114 (349)
458 1gg4_A UDP-N-acetylmuramoylala 26.6 36 0.0012 34.4 3.1 30 67-103 98-127 (452)
459 3tl8_B Effector protein hopab2 26.5 65 0.0022 28.5 4.2 37 156-212 57-93 (117)
460 1knx_A Probable HPR(Ser) kinas 26.5 27 0.00092 34.9 2.1 24 68-95 146-169 (312)
461 4gzl_A RAS-related C3 botulinu 26.5 64 0.0022 28.0 4.3 47 441-487 123-185 (204)
462 4fcw_A Chaperone protein CLPB; 26.5 23 0.0008 32.6 1.5 24 71-98 49-72 (311)
463 3i8s_A Ferrous iron transport 26.4 25 0.00085 33.0 1.7 44 443-487 105-149 (274)
464 3k28_A Glutamate-1-semialdehyd 26.4 2.1E+02 0.0071 27.6 8.3 27 463-490 218-244 (429)
465 2r2a_A Uncharacterized protein 26.1 29 0.00099 31.8 2.1 23 71-97 7-29 (199)
466 3vup_A Beta-1,4-mannanase; TIM 26.1 1.6E+02 0.0053 26.3 6.8 50 438-488 43-111 (351)
467 3l0i_B RAS-related protein RAB 25.9 13 0.00044 32.0 -0.3 45 437-481 122-171 (199)
468 3cf0_A Transitional endoplasmi 25.9 38 0.0013 32.0 2.9 27 67-97 47-73 (301)
469 2cxx_A Probable GTP-binding pr 25.8 90 0.0031 25.9 4.9 38 443-481 115-152 (190)
470 3fdb_A Beta C-S lyase, putativ 25.8 1.4E+02 0.0049 27.6 6.8 31 464-495 168-198 (377)
471 1ofh_A ATP-dependent HSL prote 25.7 25 0.00084 32.1 1.5 26 69-98 50-75 (310)
472 1ega_A Protein (GTP-binding pr 25.5 1.1E+02 0.0036 29.3 6.0 37 444-480 110-148 (301)
473 1vg8_A RAS-related protein RAB 25.5 74 0.0025 27.0 4.4 44 449-495 116-161 (207)
474 1l8q_A Chromosomal replication 25.5 39 0.0013 31.8 2.9 27 68-98 36-62 (324)
475 1c9k_A COBU, adenosylcobinamid 25.3 29 0.00098 31.9 1.9 20 71-94 1-20 (180)
476 2oap_1 GSPE-2, type II secreti 25.2 26 0.00091 36.7 1.9 26 68-97 259-284 (511)
477 2h92_A Cytidylate kinase; ross 25.2 23 0.00078 31.1 1.2 24 70-97 4-27 (219)
478 3umf_A Adenylate kinase; rossm 25.2 42 0.0015 31.3 3.1 52 427-480 162-216 (217)
479 2v6i_A RNA helicase; membrane, 25.0 70 0.0024 32.0 4.8 35 69-108 2-37 (431)
480 1tue_A Replication protein E1; 24.9 20 0.00067 34.4 0.7 29 66-98 55-83 (212)
481 2vos_A Folylpolyglutamate synt 24.9 40 0.0014 34.8 3.1 38 68-113 63-100 (487)
482 3m6a_A ATP-dependent protease 24.7 27 0.00091 36.5 1.8 48 47-98 83-133 (543)
483 2il1_A RAB12; G-protein, GDP, 24.7 37 0.0013 29.0 2.4 50 443-495 124-176 (192)
484 1vco_A CTP synthetase; tetrame 24.6 60 0.0021 34.9 4.5 73 69-146 12-99 (550)
485 1zun_B Sulfate adenylate trans 24.6 1.8E+02 0.0061 29.1 7.7 42 438-479 144-192 (434)
486 2r62_A Cell division protease 24.4 28 0.00094 31.6 1.6 23 72-98 47-69 (268)
487 1j3b_A ATP-dependent phosphoen 24.2 29 0.001 37.3 2.0 21 67-91 223-243 (529)
488 3rjt_A Lipolytic protein G-D-S 24.2 3.1E+02 0.011 22.8 8.9 123 344-481 36-170 (216)
489 3cr8_A Sulfate adenylyltranfer 24.1 25 0.00085 37.4 1.4 28 67-98 367-394 (552)
490 3qq5_A Small GTP-binding prote 24.0 22 0.00076 36.4 1.0 48 440-488 130-177 (423)
491 3rlf_A Maltose/maltodextrin im 24.0 46 0.0016 34.0 3.3 23 67-93 27-49 (381)
492 1iqp_A RFCS; clamp loader, ext 24.0 28 0.00095 31.9 1.5 24 71-98 48-71 (327)
493 1kk1_A EIF2gamma; initiation o 23.9 1.1E+02 0.0037 30.3 5.9 51 439-490 125-183 (410)
494 2wjg_A FEOB, ferrous iron tran 23.9 23 0.0008 29.7 0.9 49 439-488 101-150 (188)
495 3aam_A Endonuclease IV, endoiv 23.8 1.5E+02 0.0052 26.7 6.4 63 428-492 79-145 (270)
496 1v5w_A DMC1, meiotic recombina 23.7 51 0.0018 32.1 3.5 26 67-96 120-145 (343)
497 1sxj_D Activator 1 41 kDa subu 23.5 29 0.00098 32.4 1.6 23 72-98 61-83 (353)
498 1wn2_A Peptidyl-tRNA hydrolase 23.5 1.8E+02 0.0063 25.1 6.6 41 444-488 48-88 (121)
499 1lv7_A FTSH; alpha/beta domain 23.4 29 0.00098 31.5 1.5 22 72-97 48-69 (257)
500 4h3d_A 3-dehydroquinate dehydr 23.4 1.3E+02 0.0044 28.8 6.1 78 398-481 81-171 (258)
No 1
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=100.00 E-value=2.6e-213 Score=1642.93 Aligned_cols=407 Identities=48% Similarity=0.771 Sum_probs=402.3
Q ss_pred CCCHHHHHHHcCCCCcchhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 28 PLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 28 ~~~I~~iA~~lGi~~~~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
++||.+||+++||++|||||||+|||||++++++|++++++|||||||||||||+|||||||||||+|||+ |+||++++
T Consensus 2 ~~pI~~iA~~lgi~~~~le~YG~~kAKv~~~~l~~~~~~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~-~lgk~~~~ 80 (543)
T 3do6_A 2 MKPIKEIADQLELKDDILYPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLN-RIGKKSIV 80 (543)
T ss_dssp CCCHHHHHHHTTCCGGGEEEETTTEEEECTTHHHHTTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCCHHHHHHHcCCCHHHHHhCCCccEEecHHHhhhhhcCCCCeEEEEEecCCCCCCCCccchHHHHHHHHH-hcCCeeEE
Confidence 78999999999999999999999999999999999998899999999999999999999999999999995 99999999
Q ss_pred EecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhhccCCCCCcCC
Q 010562 108 CLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGE 187 (507)
Q Consensus 108 ~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLlaA~iDn~i~h~n~~~~~~l~~rl~p~~~~g~ 187 (507)
|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 81 ~lRePSlGP~FGiKGGAaGGGysQViPMediNLHfTGD~HAItaAnNLLaA~iDn~i~~gn------------------- 141 (543)
T 3do6_A 81 TLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGN------------------- 141 (543)
T ss_dssp EECCCCHHHHHHSCCSTTEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred EEecCCCCCcCCcccccCCCcceeecchhhccccccchHHHHHHHHHHHHHHHHHHHhccC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccceeeeccCCCCCCcceecceeEeeh
Q 010562 188 RSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVA 267 (507)
Q Consensus 188 r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G~~re~gFdITvA 267 (507)
+|+|||++|+||||||||||+||+|+||||+++||+|||||||||||
T Consensus 142 ---------------------------------~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~re~gFdITvA 188 (543)
T 3do6_A 142 ---------------------------------ELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAA 188 (543)
T ss_dssp ---------------------------------TTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGG
T ss_pred ---------------------------------ccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCccccceeEEeh
Confidence 79999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEEcccccchhcccC
Q 010562 268 SEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGN 347 (507)
Q Consensus 268 SEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHG~ 347 (507)
||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||||||||||||||||||||||
T Consensus 189 SEiMAILcLa~dl~DLk~Rlg~ivvay~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHGc 268 (543)
T 3do6_A 189 SEVMAILALSENMKDLKERLGKIIVALDADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGT 268 (543)
T ss_dssp SHHHHHHHHCSSHHHHHHHHHTCEEEEETTSCEEEHHHHTCHHHHHHHTTTTTSCEEEEETTSCEEEECCCCCSSSSCCB
T ss_pred hhhhhHHHhcCCHHHHHHHhcCEEEEEcCCCCeEehHhcccchhHHHHHHhhcCccceeeccCCeeEEecCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCccccccc
Q 010562 348 SSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNE 427 (507)
Q Consensus 348 nSviAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~e 427 (507)
|||||||+||||+ ||||||||||||||||||||||||++||+||||||||||||||||||+++ ++|.+|
T Consensus 269 nSviAtk~ALkla---DyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~--------~~l~~e 337 (543)
T 3do6_A 269 NSIIATKMAMKLS---EYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANL--------KNIHEE 337 (543)
T ss_dssp CCHHHHHHHHHHC---SEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCG--------GGTTSC
T ss_pred hHHHHHHHHHhcc---CeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCCh--------hhcCcc
Confidence 9999999999999 99999999999999999999999999999999999999999999999987 788899
Q ss_pred CHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcCcccC
Q 010562 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSD 499 (507)
Q Consensus 428 nl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~ 499 (507)
|+++|++||+||.|||||+++||+|||||||+|++||++|+++|+++|+++|+. +++|+||++||+|++|+
T Consensus 338 nl~al~~G~~NL~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~s~~wa~GG~G~~~L 408 (543)
T 3do6_A 338 NLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVR-VAVSEVFKKGSEGGVEL 408 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCE-EEEECHHHHGGGGSHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEechhhccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999995 99999999999999885
No 2
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=100.00 E-value=4.9e-202 Score=1565.12 Aligned_cols=419 Identities=54% Similarity=0.908 Sum_probs=410.1
Q ss_pred CCCCChHHHHccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhH
Q 010562 14 SPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGL 93 (507)
Q Consensus 14 ~pm~sDieIa~~~~~~~I~~iA~~lGi~~~~le~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL 93 (507)
+||||||||||+++|+||.+||+++||+++||||||+|||||++++++++++++++|+|+||+++|||+||||||||++|
T Consensus 2 ~~~~sDieIa~~~~~~pI~~ia~~~gi~~~~lE~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinL 81 (557)
T 3pzx_A 2 SKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGL 81 (557)
T ss_dssp ----CCTTTTTTCCCCCHHHHHHHTTCCGGGEEEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHH
T ss_pred CCCCCHHHHHhhCCCcCHHHHHHHcCCCHHHHHHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHH
Confidence 48999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChh
Q 010562 94 CQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDK 173 (507)
Q Consensus 94 ~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaAnNLlaA~iDn~i~h~n~~~~~ 173 (507)
+++| +++||+++++||+|||||+||+||||+|||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 82 A~al-A~~GkkVLLiLR~Psl~~~FGikggaaggG~sqv~Pme~~nLhfTGD~hAItaAnNLlaA~iDn~i~~gn----- 155 (557)
T 3pzx_A 82 TDAL-ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGN----- 155 (557)
T ss_dssp HHHH-HHTTCCEEEEECCCCSHHHHHTCCCCEEETTEEEECHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHH-HHcCCeEEEEeCCCCccccCCCCCCCCCCCceeeeechhcccCccCchhhHHHhhhHHHHHHHHHHhhcC-----
Confidence 9999 5999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccceeeeccCCCC
Q 010562 174 ALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEE 253 (507)
Q Consensus 174 ~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~ 253 (507)
+|+|||++|+|+||||||||+||+|+||+|+++
T Consensus 156 -----------------------------------------------~l~idp~~i~w~Rv~D~NdR~LR~i~~glg~~~ 188 (557)
T 3pzx_A 156 -----------------------------------------------VLNIDPRTITWRRVIDLNDRALRNIVIGLGGKA 188 (557)
T ss_dssp -----------------------------------------------TTCBCGGGCCCCEEESSCCGGGSSEEESCSSGG
T ss_pred -----------------------------------------------CCCccCCeeEEeeeecCChHHhhhhhhccCCCC
Confidence 799999999999999999999999999999999
Q ss_pred CCcceecceeEeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCcee
Q 010562 254 KGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPV 333 (507)
Q Consensus 254 ~G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa 333 (507)
||+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||||||||
T Consensus 189 ~G~~re~gFdITvASEiMAIlcLa~dl~Dlk~Rlg~ivv~~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa 268 (557)
T 3pzx_A 189 NGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPA 268 (557)
T ss_dssp GCCCEEECEEEGGGCHHHHHHHHCSSHHHHHHHHHHCEEEEBTTSCEEETGGGTCHHHHHHHTTTTTSCEEEEETTCCEE
T ss_pred CCCccccceeEEehhhhhhHHHhcCCHHHHHHHhhCEEEEEcCCCCeeeHHHcccchhHHHHHHhhcCccceeeccCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccchhcccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCC
Q 010562 334 LVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQ 413 (507)
Q Consensus 334 ~VHgGPFANIAHG~nSviAtk~ALkLag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~ 413 (507)
|||||||||||||||||||||+||||+ ||||||||||||||||||||||||++||+||||||||||||||||||+++
T Consensus 269 ~vHgGPFANIAHGcnSviAtk~ALkl~---dyvVTEAGFGaDlGaEKF~dIKcR~~gl~P~avVlVATvRALK~hGG~~~ 345 (557)
T 3pzx_A 269 FIHGGPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPK 345 (557)
T ss_dssp EECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHHTTCCG
T ss_pred EEecCcccccccCchHHHHHHHHHhcc---CeEEEecccCcCcchhhhcCCcccccCCCCCEEEEEeehHHHHhcCCCCh
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999999999986
Q ss_pred ccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccC
Q 010562 414 VVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 414 ~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG 493 (507)
++|.+||+++|++||+||.|||||+++||+|||||||+|++||++|+++|+++|+++|+. +++| |++||
T Consensus 346 --------~~l~~en~~al~~G~~NL~kHien~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~~--wa~GG 414 (557)
T 3pzx_A 346 --------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAE-VALS--WAKGG 414 (557)
T ss_dssp --------GGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHCCSSEEE-EECH--HHHGG
T ss_pred --------hhcCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEE--ecccc
Confidence 788899999999999999999999999999999999999999999999999999999995 8999 99999
Q ss_pred cCcccC
Q 010562 494 KGAVSD 499 (507)
Q Consensus 494 ~Ga~~~ 499 (507)
+|++|+
T Consensus 415 ~G~~~L 420 (557)
T 3pzx_A 415 EGGLEL 420 (557)
T ss_dssp GGGHHH
T ss_pred hhHHHH
Confidence 999875
No 3
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.96 E-value=1e-30 Score=212.32 Aligned_cols=70 Identities=56% Similarity=0.883 Sum_probs=67.6
Q ss_pred hhhhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeee
Q 010562 162 TRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWR 232 (507)
Q Consensus 162 n~i~h~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~ 232 (507)
.+||||+||+|++||+|||| .++|+|+||++|++||+||||+|+||++|||||+++|++|||||++|+|+
T Consensus 2 ~~mfHE~TQsD~aLy~RLVP-~~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRLdIDP~TITw~ 71 (71)
T 2eo2_A 2 SSGSSGSTQTDKALYNRLVP-LVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQ 71 (71)
T ss_dssp CCCSCCSSCSHHHHHHHHSC-CSSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHTCCCSTTCCCC
T ss_pred CccccccccchHHHHHhhCC-CCCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhceecccCccceeeC
Confidence 47999999999999999999 56799999999999999999999999999999999999999999999996
No 4
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.21 E-value=0.00016 Score=70.00 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=44.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiKG 122 (507)
...|.|+||+..| ||||||+++.|+.+| ++.|+++.+. +|+|++.-.||+..
T Consensus 102 ~~~kvI~vts~kg---G~GKTtva~nLA~~l-A~~G~rVLLID~D~r~~~l~~~~~~~~ 156 (299)
T 3cio_A 102 TENNILMITGATP---DSGKTFVSSTLAAVI-AQSDQKVLFIDADLRRGYSHNLFTVSN 156 (299)
T ss_dssp CSCCEEEEEESSS---SSCHHHHHHHHHHHH-HHTTCCEEEEECCTTTCCHHHHTTCCC
T ss_pred CCCeEEEEECCCC---CCChHHHHHHHHHHH-HhCCCcEEEEECCCCCccHHHHcCCCC
Confidence 4579999998655 999999999999999 5889998765 69999988888764
No 5
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.13 E-value=0.00022 Score=68.09 Aligned_cols=52 Identities=29% Similarity=0.399 Sum_probs=44.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiKG 122 (507)
+..|.|+||+-.| ||||||++..|+.+| ++.|+++.+. +|.|++.-.||+..
T Consensus 80 ~~~kvI~vts~kg---G~GKTt~a~nLA~~l-A~~G~rVLLID~D~~~~~l~~~~~~~~ 134 (271)
T 3bfv_A 80 SAVQSIVITSEAP---GAGKSTIAANLAVAY-AQAGYKTLIVDGDMRKPTQHYIFNLPN 134 (271)
T ss_dssp CCCCEEEEECSST---TSSHHHHHHHHHHHH-HHTTCCEEEEECCSSSCCHHHHTTCCC
T ss_pred CCCeEEEEECCCC---CCcHHHHHHHHHHHH-HhCCCeEEEEeCCCCCccHHHHcCCCC
Confidence 4578999987554 999999999999999 5899998875 89999988888754
No 6
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.80 E-value=0.00052 Score=66.40 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=44.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiKG 122 (507)
...|.|+||+-.| ||||||+|..|+.+| +..|+++.+. +|.|++.-.||++.
T Consensus 90 ~~~kvI~vts~kg---G~GKTtva~nLA~~l-A~~G~rVLLID~D~~~~~l~~~~~~~~ 144 (286)
T 3la6_A 90 AQNNVLMMTGVSP---SIGMTFVCANLAAVI-SQTNKRVLLIDCDMRKGYTHELLGTNN 144 (286)
T ss_dssp TTCCEEEEEESSS---SSSHHHHHHHHHHHH-HTTTCCEEEEECCTTTCCHHHHHTCCC
T ss_pred CCCeEEEEECCCC---CCcHHHHHHHHHHHH-HhCCCCEEEEeccCCCCCHHHHhCCCC
Confidence 4579999998665 999999999999999 5889998765 78899988888753
No 7
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.03 E-value=0.0035 Score=60.93 Aligned_cols=53 Identities=23% Similarity=0.132 Sum_probs=41.7
Q ss_pred CCC-cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec--CCCCCCccccccC
Q 010562 67 ADG-YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIKGG 123 (507)
Q Consensus 67 ~~G-KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lR--ePSlGP~FGiKGG 123 (507)
.+| |.|+|++- .-|+||||+|..|+.+| ++.|+++.+.== +||+.-.||.+.+
T Consensus 10 ~~gm~~i~v~sg---KGGvGKTTvA~~LA~~l-A~~G~rVLlvD~D~~~~l~~~l~~~~~ 65 (324)
T 3zq6_A 10 NKGKTTFVFIGG---KGGVGKTTISAATALWM-ARSGKKTLVISTDPAHSLSDSLEREIG 65 (324)
T ss_dssp BTTBCEEEEEEE---STTSSHHHHHHHHHHHH-HHTTCCEEEEECCSSCCHHHHHTSCCC
T ss_pred CCCCeEEEEEeC---CCCchHHHHHHHHHHHH-HHCCCcEEEEeCCCCcCHHHHhCCcCC
Confidence 458 77777765 56999999999999999 588999876532 5677778998753
No 8
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.96 E-value=0.0034 Score=57.51 Aligned_cols=50 Identities=28% Similarity=0.322 Sum_probs=38.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCcccccc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiKG 122 (507)
+|.|.|++ +.-|+||||++..|+.+| ++.|+++.+. .++|++.-.||++.
T Consensus 2 ~~~I~v~s---~kgGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~l~~~l~~~~ 54 (263)
T 1hyq_A 2 VRTITVAS---GKGGTGKTTITANLGVAL-AQLGHDVTIVDADITMANLELILGMEG 54 (263)
T ss_dssp CEEEEEEE---SSSCSCHHHHHHHHHHHH-HHTTCCEEEEECCCSSSSHHHHTTCCC
T ss_pred CeEEEEEC---CCCCCCHHHHHHHHHHHH-HhCCCcEEEEECCCCCCCcchhcCCCC
Confidence 46677765 566999999999999999 5789987664 35677776777653
No 9
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.78 E-value=0.0038 Score=56.62 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=37.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiK 121 (507)
+|.|.|++ +.-|+||||+|..|+.+| ++.|+++.+. .++|++.-.||+.
T Consensus 2 ~~vi~v~s---~kgGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~~~~~lg~~ 53 (260)
T 3q9l_A 2 ARIIVVTS---GKGGVGKTTSSAAIATGL-AQKGKKTVVIDFAIGLRNLDLIMGCE 53 (260)
T ss_dssp CEEEEEEC---SSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCCSSCCHHHHTTCG
T ss_pred CeEEEEEC---CCCCCcHHHHHHHHHHHH-HhCCCcEEEEECCCCCCChhHHhCCC
Confidence 46777765 567999999999999999 5889997763 3566666667654
No 10
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.58 E-value=0.0099 Score=53.42 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=31.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhc-CCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~l-Gk~a~~~ 108 (507)
.+|.|.|++- .-|+||||++..|+.+| ++. |+++.+.
T Consensus 3 ~~~vI~v~s~---kGGvGKTt~a~~LA~~l-a~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSA---KGGDGGSCIAANFAFAL-SQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEES---STTSSHHHHHHHHHHHH-TTSTTCCEEEE
T ss_pred CCeEEEEECC---CCCcchHHHHHHHHHHH-HhCcCCCEEEE
Confidence 5788888874 56999999999999999 577 9998765
No 11
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.42 E-value=0.011 Score=55.93 Aligned_cols=40 Identities=30% Similarity=0.265 Sum_probs=32.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
+.+|.|.|+ . .-|+||||+|+.|+.+| ++.|+++.+.=-.
T Consensus 39 ~~~~vI~v~---~-KGGvGKTT~a~nLA~~L-a~~G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVY---G-KGGIGKSTTSSNLSAAF-SILGKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEE---C-STTSSHHHHHHHHHHHH-HHTTCCEEEEEES
T ss_pred CCceEEEEE---C-CCCccHHHHHHHHHHHH-HHCCCeEEEEeCC
Confidence 568899887 2 88999999999999999 5889997765333
No 12
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.36 E-value=0.012 Score=52.73 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=35.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiK 121 (507)
+|.|.|++ +.-|+||||++..|+.+| ++.|+++.+. .++|++.-.||+.
T Consensus 2 ~~~i~v~s---~kgGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~l~~~~~~~ 53 (237)
T 1g3q_A 2 GRIISIVS---GKGGTGKTTVTANLSVAL-GDRGRKVLAVDGDLTMANLSLVLGVD 53 (237)
T ss_dssp CEEEEEEC---SSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCTTSCCHHHHTTCC
T ss_pred ceEEEEec---CCCCCCHHHHHHHHHHHH-HhcCCeEEEEeCCCCCCChhHhcCCC
Confidence 46677765 567999999999999999 5789987654 2445554455543
No 13
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=95.21 E-value=0.009 Score=53.26 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=28.1
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
|.|.||+ +.-|+||||+|.+|+.+| ++.|+++.+
T Consensus 2 k~I~v~s---~kgGvGKTt~a~nLa~~l-a~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTG---TDTEVGKTVASCALLQAA-KAAGYRTAG 35 (224)
T ss_dssp EEEEEEE---SSTTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ceEEEEE---CCCCCCHHHHHHHHHHHH-HHCCCCEEE
Confidence 4566654 677999999999999999 588999775
No 14
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.14 E-value=0.0081 Score=58.77 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=40.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccccC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiKGG 123 (507)
.+|.|+||+ +.-|+||||+|..|+.+| ++.|+++.+. .| ||+.-.||++.+
T Consensus 17 ~~~~i~v~s---gkGGvGKTTva~~LA~~l-A~~G~rVllvD~D~~-~~l~~~l~~~~~ 70 (329)
T 2woo_A 17 TSLKWIFVG---GKGGVGKTTTSCSLAIQM-SKVRSSVLLISTDPA-HNLSDAFGTKFG 70 (329)
T ss_dssp TTCCEEEEE---CSSSSSHHHHHHHHHHHH-HTSSSCEEEEECCTT-CHHHHHHSSCCC
T ss_pred CCCEEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEEEEECCCC-cCHHHHhCCcCC
Confidence 356666664 477999999999999999 5889998754 35 888888998753
No 15
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.01 E-value=0.021 Score=53.06 Aligned_cols=38 Identities=32% Similarity=0.091 Sum_probs=31.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
..+|.|.|++ +.-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 16 ~~~~vI~v~s---~kGGvGKTT~a~nLA~~l-a~~G~~Vlli 53 (262)
T 2ph1_A 16 KIKSRIAVMS---GKGGVGKSTVTALLAVHY-ARQGKKVGIL 53 (262)
T ss_dssp TCSCEEEEEC---SSSCTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred cCCeEEEEEc---CCCCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 3578888876 567999999999999999 5789987653
No 16
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.88 E-value=0.019 Score=52.98 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=29.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
+.+|.|.|++- .-|+||||+|..|+.+| + .|+++.+.
T Consensus 25 ~~~~vI~v~s~---kGGvGKTT~a~~LA~~l-a-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIASI---KGGVGKSTSAIILATLL-S-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECCS---SSSSCHHHHHHHHHHHH-T-TTSCEEEE
T ss_pred CCCeEEEEEeC---CCCchHHHHHHHHHHHH-H-CCCCEEEE
Confidence 45888888764 56999999999999999 5 79886543
No 17
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.83 E-value=0.019 Score=53.61 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=35.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
.|++|++.|+. |.||||.+--|.+.|. ..|.+.+...|||+
T Consensus 2 ~g~~i~~eG~~----gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~ 42 (213)
T 4tmk_A 2 RSKYIVIEGLE----GAGKTTARNVVVETLE-QLGIRDMVFTREPG 42 (213)
T ss_dssp CCCEEEEEECT----TSCHHHHHHHHHHHHH-HTTCCCEEEEESSC
T ss_pred CCeEEEEECCC----CCCHHHHHHHHHHHHH-HcCCCcceeeeCCC
Confidence 38999999974 9999999999999994 77886678899995
No 18
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.82 E-value=0.014 Score=53.87 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=31.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
+.+|.|.|++ +.-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 4 ~~~~vI~v~s---~kGGvGKTt~a~~LA~~l-a~~g~~Vlli 41 (257)
T 1wcv_1 4 AKVRRIALAN---QKGGVGKTTTAINLAAYL-ARLGKRVLLV 41 (257)
T ss_dssp -CCCEEEECC---SSCCHHHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCEEEEEEe---CCCCchHHHHHHHHHHHH-HHCCCCEEEE
Confidence 4578888876 566999999999999999 5789987764
No 19
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.73 E-value=0.013 Score=58.19 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=40.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhh--hcCCcEEEE---ecCCCCCCccccccC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGA--FLDKKVVTC---LRQPSQGPTFGIKGG 123 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~--~lGk~a~~~---lRePSlGP~FGiKGG 123 (507)
+++.|+||+- .-|+||||+|..|+.+| + +.|+++.+. +| ||+.-.||++.+
T Consensus 16 ~~~~i~v~sg---KGGvGKTTvaanLA~~l-A~~~~G~rVLLvD~D~~-~~l~~~lg~~~~ 71 (354)
T 2woj_A 16 TTHKWIFVGG---KGGVGKTTSSCSIAIQM-ALSQPNKQFLLISTDPA-HNLSDAFGEKFG 71 (354)
T ss_dssp SSCCEEEEEE---STTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSS-CCHHHHHTSCCC
T ss_pred CCcEEEEEeC---CCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCC-CCHHHHhCCCCC
Confidence 4566666654 66999999999999999 6 789998875 54 788888999864
No 20
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.66 E-value=0.027 Score=49.51 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=38.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FG 119 (507)
..|++|++||. -|.||||++--|++.|+ ..+..+ ..+|+|..|..+|
T Consensus 8 ~~~~~I~l~G~----~GsGKST~~~~L~~~l~-~~~~~~-~~~~~~~~~~~~g 54 (212)
T 2wwf_A 8 KKGKFIVFEGL----DRSGKSTQSKLLVEYLK-NNNVEV-KHLYFPNRETGIG 54 (212)
T ss_dssp BCSCEEEEEES----TTSSHHHHHHHHHHHHH-HTTCCE-EEEESSCTTSHHH
T ss_pred hcCCEEEEEcC----CCCCHHHHHHHHHHHHH-HcCCcE-EEEecCCCCCcHH
Confidence 35899999996 59999999999999995 667777 6799997655443
No 21
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.45 E-value=0.028 Score=53.46 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=36.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
..|++|++.|+. |.||||.+--|.+.|. ..|.+.+..+|||+
T Consensus 25 ~~~~~i~~eG~~----GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 25 MNAKFIVIEGLE----GAGKSTAIQVVVETLQ-QNGIDHITRTREPG 66 (236)
T ss_dssp -CCCEEEEEEST----TSCHHHHHHHHHHHHH-HTTCCCEEEEESSC
T ss_pred CCCeEEEEECCC----CCCHHHHHHHHHHHHH-hcCCCeeeeecCCC
Confidence 359999999974 9999999999999995 78988778899996
No 22
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.27 E-value=0.036 Score=54.75 Aligned_cols=53 Identities=28% Similarity=0.158 Sum_probs=41.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec--CCCCCCccccccC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIKGG 123 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lR--ePSlGP~FGiKGG 123 (507)
+.+|.|+|++- .-|+||||+|..|+.+| ++.|+++.++== +||+.-.||++-+
T Consensus 23 ~~~~~i~v~sg---KGGvGKTTvA~~LA~~l-A~~G~rVLlvD~D~~~~l~~~l~~~~~ 77 (349)
T 3ug7_A 23 KDGTKYIMFGG---KGGVGKTTMSAATGVYL-AEKGLKVVIVSTDPAHSLRDIFEQEFG 77 (349)
T ss_dssp SCSCEEEEEEC---SSSTTHHHHHHHHHHHH-HHSSCCEEEEECCTTCHHHHHHCSCCC
T ss_pred cCCCEEEEEeC---CCCccHHHHHHHHHHHH-HHCCCeEEEEeCCCCCCHHHHhCCCCC
Confidence 45777877765 55999999999999999 588999877632 5677778988753
No 23
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.18 E-value=0.025 Score=53.56 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=37.9
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhh-cCCcEEEEecCCCC
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF-LDKKVVTCLRQPSQ 114 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~-lGk~a~~~lRePSl 114 (507)
...|++|+++|+. |.||||.+--|++.|. . .|.+++...|||.-
T Consensus 18 ~~~~~~i~~~G~~----g~GKst~~~~l~~~l~-~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 18 GPGSMFITFEGID----GSGKTTQSHLLAEYLS-EIYGVNNVVLTREPGG 62 (223)
T ss_dssp -CCCEEEEEECST----TSSHHHHHHHHHHHHH-HHHCGGGEEEEESSCS
T ss_pred CCCCeEEEEECCC----CCCHHHHHHHHHHHHh-hccCceeeEeeeCCCC
Confidence 3579999999974 9999999999999995 6 79888876899973
No 24
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.98 E-value=0.051 Score=47.67 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=35.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlG 115 (507)
+.|++|++||. -|.||||++--|++.|+ ..|..+ ..+|+|.-|
T Consensus 7 ~~~~~I~l~G~----~GsGKsT~~~~L~~~l~-~~~~~v-~~~~~~~~~ 49 (215)
T 1nn5_A 7 RRGALIVLEGV----DRAGKSTQSRKLVEALC-AAGHRA-ELLRFPERS 49 (215)
T ss_dssp CCCCEEEEEES----TTSSHHHHHHHHHHHHH-HTTCCE-EEEESSCTT
T ss_pred cCCcEEEEECC----CCCCHHHHHHHHHHHHH-HcCCcE-EEeeCCCCC
Confidence 35899999995 69999999999999995 667776 678998543
No 25
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.58 E-value=0.054 Score=50.69 Aligned_cols=39 Identities=21% Similarity=0.077 Sum_probs=31.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
++|.|.|++.+ ..-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 33 ~~~~i~v~~~s-~KGGvGKTT~a~nLA~~l-a~~G~rVlli 71 (298)
T 2oze_A 33 KNEAIVILNNY-FKGGVGKSKLSTMFAYLT-DKLNLKVLMI 71 (298)
T ss_dssp HCSCEEEEECC-SSSSSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCcEEEEEecc-CCCCchHHHHHHHHHHHH-HhCCCeEEEE
Confidence 47888887643 367999999999999999 5889987653
No 26
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=93.45 E-value=0.015 Score=59.03 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=41.4
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE--EecCCCCCCccccccCCCCCCceee
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT--CLRQPSQGPTFGIKGGAAGGGYSQV 132 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~--~lRePSlGP~FGiKGGAaGGGysQV 132 (507)
+++++++ .-|+||||++..|+.+| +..|+++.+ | |+||+.-.||++-+ ..-.+|
T Consensus 3 ~i~~~~g----kGG~GKTt~a~~la~~l-a~~g~~vllvd~-~~~~l~~~~~~~~~---~~~~~v 58 (374)
T 3igf_A 3 LILTFLG----KSGVARTKIAIAAAKLL-ASQGKRVLLAGL-AEPVLPLLLEQTLT---PDPQQI 58 (374)
T ss_dssp EEEEEEC----SBHHHHHHHHHHHHHHH-HHTTCCEEEEEC-SCSHHHHHHTSCCC---SSCEEE
T ss_pred EEEEEeC----CCCCcHHHHHHHHHHHH-HHCCCCeEEEeC-CCCChHHhhCCCCC---CCcccc
Confidence 3555554 34999999999999999 588998743 5 99999999999843 344455
No 27
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.38 E-value=0.056 Score=47.08 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=27.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
|.|.|++ +.-|+||||++..|+.+| ++.|+++.+.
T Consensus 2 ~vi~v~s---~kgG~GKTt~a~~la~~l-a~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLN---PKGGSGKTTAVINIATAL-SRSGYNIAVV 36 (206)
T ss_dssp EEEEECC---SSTTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred eEEEEEe---CCCCccHHHHHHHHHHHH-HHCCCeEEEE
Confidence 3455554 578999999999999999 5789886653
No 28
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.37 E-value=0.06 Score=53.21 Aligned_cols=51 Identities=22% Similarity=0.103 Sum_probs=38.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEe--cCCCCCCccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFGIK 121 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~l--RePSlGP~FGiK 121 (507)
+++|.|.|++- .-|+||||+|..|+.+| ++.|+++.+.= ++|++.-.||..
T Consensus 141 ~~~kvIav~s~---KGGvGKTT~a~nLA~~L-a~~g~rVlliD~D~~~~l~~~lg~~ 193 (373)
T 3fkq_A 141 DKSSVVIFTSP---CGGVGTSTVAAACAIAH-ANMGKKVFYLNIEQCGTTDVFFQAE 193 (373)
T ss_dssp TSCEEEEEECS---STTSSHHHHHHHHHHHH-HHHTCCEEEEECCTTCCHHHHCCCS
T ss_pred CCceEEEEECC---CCCChHHHHHHHHHHHH-HhCCCCEEEEECCCCCCHHHHcCCC
Confidence 46888888764 56999999999999999 57899976533 455555556554
No 29
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.26 E-value=0.062 Score=49.87 Aligned_cols=40 Identities=33% Similarity=0.428 Sum_probs=35.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
.|++|++.|+. |.||||.+--|.+.|. ..|.++ ...|||.
T Consensus 5 ~g~~i~~eG~~----gsGKsT~~~~l~~~l~-~~~~~v-~~~~~p~ 44 (213)
T 4edh_A 5 TGLFVTLEGPE----GAGKSTNRDYLAERLR-ERGIEV-QLTREPG 44 (213)
T ss_dssp CCEEEEEECST----TSSHHHHHHHHHHHHH-TTTCCE-EEEESSC
T ss_pred CceEEEEEcCC----CCCHHHHHHHHHHHHH-HcCCCc-ccccCCC
Confidence 58999999974 9999999999999995 778876 6889995
No 30
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.96 E-value=0.081 Score=52.01 Aligned_cols=51 Identities=33% Similarity=0.440 Sum_probs=40.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcccccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKG 122 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKG 122 (507)
...|+|-|++ .=|.||||||+-|+-|| ++.|+++.+.==.|....++++-+
T Consensus 46 ~~aKVIAIaG----KGGVGKTTtavNLA~aL-A~~GkkVllID~Dpq~~s~~~l~~ 96 (314)
T 3fwy_A 46 TGAKVFAVYG----KGGIGKSTTSSNLSAAF-SILGKRVLQIGCDPKHDSTFTLTG 96 (314)
T ss_dssp -CCEEEEEEC----STTSSHHHHHHHHHHHH-HHTTCCEEEEEESSSCCTTHHHHT
T ss_pred CCceEEEEEC----CCccCHHHHHHHHHHHH-HHCCCeEEEEecCCCCcccccccC
Confidence 3578998884 89999999999999999 699999888767776555555533
No 31
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.84 E-value=0.068 Score=49.01 Aligned_cols=34 Identities=32% Similarity=0.329 Sum_probs=27.3
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
|.|.| + ..-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 2 ~vI~v---s-~KGGvGKTT~a~nLA~~l-a~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAI---Y-GKGGIGKSTTTQNLTSGL-HAMGKTIMVV 35 (269)
T ss_dssp EEEEE---E-ECTTSSHHHHHHHHHHHH-HTTTCCEEEE
T ss_pred cEEEE---e-cCCCCcHHHHHHHHHHHH-HHCCCcEEEE
Confidence 34555 3 388999999999999999 5889997764
No 32
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.72 E-value=0.085 Score=52.77 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=41.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhh--hcCCcEEEEe--cCCCCCCccccccC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA--FLDKKVVTCL--RQPSQGPTFGIKGG 123 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~--~lGk~a~~~l--RePSlGP~FGiKGG 123 (507)
+.-|++++++ .-|+||||++..|+.+| + +.|+++.+.= ++||+.-.||++-|
T Consensus 16 ~~~~i~~~~g----kGGvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~~~l~~~~~~~~~ 71 (348)
T 3io3_A 16 DSLKWIFVGG----KGGVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPAHNLSDAFCQKFG 71 (348)
T ss_dssp TTCSEEEEEC----STTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSSCHHHHHHTSCCC
T ss_pred CCcEEEEEeC----CCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCCCChHHHhccccC
Confidence 4447888887 55999999999999999 6 7899976532 77888888998754
No 33
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.67 E-value=0.075 Score=52.77 Aligned_cols=48 Identities=29% Similarity=0.355 Sum_probs=37.1
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEe--cCCCCCCcccccc
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFGIKG 122 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~l--RePSlGP~FGiKG 122 (507)
+++++++ .-|+||||+|..|+.+| +..|+++.+.= ++||+.-.||.+-
T Consensus 17 ~i~~~sg----kGGvGKTt~a~~lA~~l-a~~g~~vllid~D~~~~l~~~l~~~~ 66 (334)
T 3iqw_A 17 RWIFVGG----KGGVGKTTTSCSLAIQL-AKVRRSVLLLSTDPAHNLSDAFSQKF 66 (334)
T ss_dssp CEEEEEC----STTSSHHHHHHHHHHHH-TTSSSCEEEEECCSSCHHHHHHTSCC
T ss_pred EEEEEeC----CCCccHHHHHHHHHHHH-HhCCCcEEEEECCCCCChhHHhcccc
Confidence 4554443 66999999999999999 58899976532 6788888888764
No 34
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.66 E-value=0.047 Score=56.94 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=40.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE---ecCCCCCCccccccC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~---lRePSlGP~FGiKGG 123 (507)
..+++++++- -|+||||+|..|+.+| ++.|+++.+. . +||++-.||++-+
T Consensus 7 ~~~i~~~sgk----GGvGKTT~a~~lA~~l-A~~G~rVLlvd~D~-~~~l~~~l~~~~~ 59 (589)
T 1ihu_A 7 IPPYLFFTGK----GGVGKTSISCATAIRL-AEQGKRVLLVSTDP-ASNVGQVFSQTIG 59 (589)
T ss_dssp CCSEEEEECS----TTSSHHHHHHHHHHHH-HHTTCCEEEEECCT-TCCHHHHTTSCCC
T ss_pred CCEEEEEeCC----CcCHHHHHHHHHHHHH-HHCCCcEEEEECCC-CcCHHHHhCCccc
Confidence 3577777653 7999999999999999 5889997762 4 4888888998754
No 35
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.61 E-value=0.075 Score=49.78 Aligned_cols=34 Identities=41% Similarity=0.358 Sum_probs=27.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
|.|.| + ..-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 3 kvIav---s-~KGGvGKTT~a~nLA~~L-a~~G~rVlli 36 (289)
T 2afh_E 3 RQCAI---Y-GKGGIGKSTTTQNLVAAL-AEMGKKVMIV 36 (289)
T ss_dssp EEEEE---E-ECTTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred eEEEE---e-CCCcCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 45666 2 388999999999999999 5889998754
No 36
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.51 E-value=0.097 Score=47.42 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=25.7
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
|.|.|++ ..-|+||||+++.|+.+| ++.| ++.+
T Consensus 1 kvI~v~s---~KGGvGKTT~a~~LA~~l-a~~g-~Vll 33 (209)
T 3cwq_A 1 MIITVAS---FKGGVGKTTTAVHLSAYL-ALQG-ETLL 33 (209)
T ss_dssp CEEEEEE---SSTTSSHHHHHHHHHHHH-HTTS-CEEE
T ss_pred CEEEEEc---CCCCCcHHHHHHHHHHHH-HhcC-CEEE
Confidence 3455554 577999999999999999 4778 6554
No 37
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=92.47 E-value=0.11 Score=51.43 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=29.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhh-----hcCCcEEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA-----FLDKKVVTC 108 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~-----~lGk~a~~~ 108 (507)
..+|.|.|++ ..=|+||||+|+.|+.+|.. +.|+++.+.
T Consensus 106 ~~~~vIav~s---~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 106 SEAYVIFISN---LKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CSCEEEEECC---SSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CCCeEEEEEe---CCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 3477777765 45699999999999999942 368887653
No 38
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=92.41 E-value=0.082 Score=52.44 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhh-----hcCCcEEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA-----FLDKKVVTC 108 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~-----~lGk~a~~~ 108 (507)
..+|.|.|++- .=|+||||+|+-|+.+|.. +.|+++.+.
T Consensus 109 ~~~~vIav~s~---KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 109 KSPYVIFVVNL---KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp CSCEEEEECCC-----------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred CCceEEEEEcC---CCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 45788877754 5699999999999999942 578997765
No 39
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.37 E-value=0.044 Score=48.72 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=30.4
Q ss_pred CCCCCcchhHhhHHHHHhhhcCCcEEEEec--CCCCCCccccc
Q 010562 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIK 121 (507)
Q Consensus 81 P~GEGKTTttIGL~qaL~~~lGk~a~~~lR--ePSlGP~FGiK 121 (507)
.-|+||||+|..|+.+| ++.|+++.+.== |||+.-.||+.
T Consensus 8 kGGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~l~~~lg~~ 49 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIM-ASDYDKIYAVDGDPDSCLGQTLGLS 49 (254)
T ss_dssp SSSHHHHHHHHHHHHHH-TTTCSCEEEEEECTTSCHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCeEEEEeCCCCcChHHHhCCC
Confidence 78999999999999999 588998765421 35655556554
No 40
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.34 E-value=0.099 Score=49.41 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=33.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhc----CCcEEEEecCCCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL----DKKVVTCLRQPSQG 115 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~l----Gk~a~~~lRePSlG 115 (507)
..|++|++.|+ -|.||||.+--|++.|. .. |.++ ...|||.-+
T Consensus 23 ~~g~~I~~eG~----~GsGKsT~~~~l~~~l~-~~~~~~g~~v-~~~rep~~t 69 (227)
T 3v9p_A 23 ARGKFITFEGI----DGAGKTTHLQWFCDRLQ-ERLGPAGRHV-VVTREPGGT 69 (227)
T ss_dssp CCCCEEEEECC----C---CHHHHHHHHHHHH-HHHGGGTCCE-EEEESSSSS
T ss_pred cCCeEEEEECC----CCCCHHHHHHHHHHHHH-hhccccceee-eeecCCCCC
Confidence 36999999996 59999999999999995 55 8776 589999533
No 41
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=92.16 E-value=0.058 Score=50.46 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=29.9
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
|-|+||+ |-.|+||||+|.||+++| ++.|+++.. +.|
T Consensus 5 k~i~Itg---t~t~vGKT~vt~~L~~~l-~~~G~~V~~--~KP 41 (228)
T 3of5_A 5 KKFFIIG---TDTEVGKTYISTKLIEVC-EHQNIKSLC--LKP 41 (228)
T ss_dssp EEEEEEE---SSSSSCHHHHHHHHHHHH-HHTTCCEEE--ECS
T ss_pred cEEEEEe---CCCCCCHHHHHHHHHHHH-HHCCCeeEE--ecc
Confidence 4577776 556999999999999999 588998764 555
No 42
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=91.73 E-value=0.11 Score=48.92 Aligned_cols=36 Identities=39% Similarity=0.428 Sum_probs=28.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.|.|.|++ +.-|+||||+|..|+.+| ++.|+++.+.
T Consensus 4 ~kvI~v~s---~KGGvGKTT~a~nLA~~L-a~~G~~Vlli 39 (286)
T 2xj4_A 4 TRVIVVGN---EKGGAGKSTIAVHLVTAL-LYGGAKVAVI 39 (286)
T ss_dssp CEEEEECC---SSSCTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CeEEEEEc---CCCCCCHHHHHHHHHHHH-HHCCCcEEEE
Confidence 45666654 678999999999999999 5889987643
No 43
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=91.69 E-value=0.13 Score=49.08 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
+..|-|+||+ |-.|.||||+|.||+++| .+.|.++..
T Consensus 19 ~m~k~i~Itg---T~t~vGKT~vs~gL~~~L-~~~G~~V~~ 55 (242)
T 3qxc_A 19 FQGHMLFISA---TNTNAGKTTCARLLAQYC-NACGVKTIL 55 (242)
T ss_dssp CCCEEEEEEE---SSTTSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred hcCcEEEEEe---CCCCCcHHHHHHHHHHHH-HhCCCceEE
Confidence 4578899886 567999999999999999 588988654
No 44
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.12 E-value=0.16 Score=52.38 Aligned_cols=36 Identities=31% Similarity=0.300 Sum_probs=29.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhc-CCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~l-Gk~a~~~ 108 (507)
..+.|+|++ +-|+|||||+..|+.+|. .. |+++.+.
T Consensus 99 ~~~vI~ivG----~~GvGKTT~a~~LA~~l~-~~~G~kVllv 135 (433)
T 2xxa_A 99 PPAVVLMAG----LQGAGKTTSVGKLGKFLR-EKHKKKVLVV 135 (433)
T ss_dssp SSEEEEEEC----STTSSHHHHHHHHHHHHH-HTSCCCEEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHHH-HhcCCeEEEE
Confidence 356888876 359999999999999994 77 9887754
No 45
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=91.06 E-value=0.096 Score=50.28 Aligned_cols=43 Identities=23% Similarity=0.160 Sum_probs=30.5
Q ss_pred hhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 60 LDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 60 l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
+.++.. ++=|-|+||+ |..|+||||+|.||+++| .+.|.++..
T Consensus 18 ~~~~~~-~~m~~i~Itg---t~t~vGKT~vt~gL~~~l-~~~G~~V~~ 60 (251)
T 3fgn_A 18 ENLYFQ-SHMTILVVTG---TGTGVGKTVVCAALASAA-RQAGIDVAV 60 (251)
T ss_dssp ----CC-SSCEEEEEEE---SSTTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred HHHhcc-cCCCEEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEEE
Confidence 444443 3346788775 567999999999999999 588988664
No 46
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.86 E-value=0.17 Score=49.80 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=30.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
+.|+.|+|++ | -|+|||||+.-|+..| +..|+++.+.
T Consensus 103 ~~~~vI~ivG--~--~G~GKTT~~~~LA~~l-~~~g~kVlli 139 (320)
T 1zu4_A 103 NRLNIFMLVG--V--NGTGKTTSLAKMANYY-AELGYKVLIA 139 (320)
T ss_dssp TSCEEEEEES--S--TTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCeEEEEEC--C--CCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 4588999997 3 7999999999999999 4678887654
No 47
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.35 E-value=0.22 Score=43.21 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=31.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
|++|+++|. -|.||||++--|++.|+ ..| + ++..++|
T Consensus 4 ~~~I~i~G~----~GsGKsT~~~~L~~~l~-~~g-~-~~~~~~~ 40 (213)
T 2plr_A 4 GVLIAFEGI----DGSGKSSQATLLKDWIE-LKR-D-VYLTEWN 40 (213)
T ss_dssp CEEEEEECC----TTSSHHHHHHHHHHHHT-TTS-C-EEEEETT
T ss_pred CeEEEEEcC----CCCCHHHHHHHHHHHHh-hcC-C-EEEecCC
Confidence 789999996 69999999999999995 556 3 5667888
No 48
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.15 E-value=0.23 Score=42.85 Aligned_cols=37 Identities=41% Similarity=0.467 Sum_probs=29.5
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
+|++||. -|.||||++--|++.|. ..|... +..|+|.
T Consensus 2 ~I~l~G~----~GsGKsT~~~~L~~~l~-~~g~~v-~~~~~~~ 38 (197)
T 2z0h_A 2 FITFEGI----DGSGKSTQIQLLAQYLE-KRGKKV-ILKREPG 38 (197)
T ss_dssp EEEEECS----TTSSHHHHHHHHHHHHH-HCCC-E-EEEESSC
T ss_pred EEEEECC----CCCCHHHHHHHHHHHHH-HCCCeE-EEeeCCC
Confidence 6888885 59999999999999994 668775 5778875
No 49
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.45 E-value=0.22 Score=44.34 Aligned_cols=47 Identities=21% Similarity=0.122 Sum_probs=35.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~ 117 (507)
..|++|+++|. .|.||||++--|.+.+...+....-.+.|+|-.|..
T Consensus 10 ~~~~~i~l~G~----sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~ 56 (204)
T 2qor_A 10 ARIPPLVVCGP----SGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKET 56 (204)
T ss_dssp CCCCCEEEECC----TTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC
T ss_pred ccCCEEEEECC----CCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCC
Confidence 46899999984 699999999999887732244445567899887765
No 50
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.28 E-value=0.34 Score=47.04 Aligned_cols=38 Identities=32% Similarity=0.301 Sum_probs=29.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
+.|+.|.++|- + |+|||||+.-|+..+...-|+++.+.
T Consensus 103 ~~g~vi~lvG~--~--GsGKTTl~~~LA~~l~~~~G~~V~lv 140 (296)
T 2px0_A 103 IHSKYIVLFGS--T--GAGKTTTLAKLAAISMLEKHKKIAFI 140 (296)
T ss_dssp CCSSEEEEEES--T--TSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCcEEEEECC--C--CCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 35889999884 2 99999999999999942368765543
No 51
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.10 E-value=0.38 Score=41.80 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=30.7
Q ss_pred hhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 60 LDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 60 l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
|++......|++|+++|+ -|.||||++.-|++.|+ ..|.+..
T Consensus 4 ~~~~~~~~~~~~i~l~G~----~GsGKsT~~~~L~~~l~-~~~~~~~ 45 (186)
T 2yvu_A 4 LTTYKCIEKGIVVWLTGL----PGSGKTTIATRLADLLQ-KEGYRVE 45 (186)
T ss_dssp ----CCCSCCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred cccccccCCCcEEEEEcC----CCCCHHHHHHHHHHHHH-hcCCeEE
Confidence 344334457999999997 69999999999999995 5566653
No 52
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.85 E-value=0.27 Score=46.11 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=31.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
.|++|++.|+ -|.||||.+--|.+.|. . + ...+|||.
T Consensus 4 ~g~~i~~eG~----~g~GKst~~~~l~~~l~-~---~-~~~~~ep~ 40 (216)
T 3tmk_A 4 RGKLILIEGL----DRTGKTTQCNILYKKLQ-P---N-CKLLKFPE 40 (216)
T ss_dssp CCCEEEEEEC----SSSSHHHHHHHHHHHHC-S---S-EEEEESSC
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHhc-c---c-ceEEEecC
Confidence 5999999997 49999999999999984 3 2 56789994
No 53
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=88.33 E-value=0.21 Score=49.31 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=27.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
|.|.|+ -..-|+||||+|+-|+.+| ++.|+++.+.
T Consensus 2 kvIav~---s~KGGvGKTT~a~nLA~~L-A~~G~rVLlI 36 (361)
T 3pg5_A 2 RTISFF---NNKGGVGKTTLSTNVAHYF-ALQGKRVLYV 36 (361)
T ss_dssp EEEEBC---CSSCCHHHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred eEEEEE---cCCCCCcHHHHHHHHHHHH-HhCCCcEEEE
Confidence 344444 3467999999999999999 5889997765
No 54
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.12 E-value=0.37 Score=47.31 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=29.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
+.|++|++++- -|+|||||+.-|+..+ ..-|+++.+.
T Consensus 102 ~~~~vi~ivG~----~GsGKTTl~~~LA~~l-~~~g~kV~lv 138 (306)
T 1vma_A 102 EPPFVIMVVGV----NGTGKTTSCGKLAKMF-VDEGKSVVLA 138 (306)
T ss_dssp SSCEEEEEECC----TTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCeEEEEEcC----CCChHHHHHHHHHHHH-HhcCCEEEEE
Confidence 45889999983 5999999999999999 4667776543
No 55
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.71 E-value=0.37 Score=49.99 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=29.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
.+++|+++|- -|+|||||+.-|+..| ...|+++.+
T Consensus 96 ~~~vI~lvG~----~GsGKTTt~~kLA~~l-~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGV----QGSGKTTTAGKLAYFY-KKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCC----TTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHH-HHcCCeEEE
Confidence 4789999974 3999999999999999 477888754
No 56
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.68 E-value=0.37 Score=44.34 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=31.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
||+|.+-|+ -|.||||.+--|++.|. + |.+ ++..|||.
T Consensus 2 ~kFI~~EG~----dGsGKsTq~~~L~~~L~-~-~~~-v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGP----EGSGKTTVINEVYHRLV-K-DYD-VIMTREPG 39 (205)
T ss_dssp CEEEEEECC----TTSCHHHHHHHHHHHHT-T-TSC-EEEEESST
T ss_pred CCEEEEECC----CCCcHHHHHHHHHHHHH-C-CCC-EEEeeCCC
Confidence 789999986 59999999999999994 4 766 55689995
No 57
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.20 E-value=0.56 Score=42.74 Aligned_cols=39 Identities=21% Similarity=-0.054 Sum_probs=30.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
+.|.++| |.|.||||++..|...|. ..|.++.+.-+.|.
T Consensus 5 ~~i~i~G----~sGsGKTTl~~~L~~~l~-~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVG----YKHSGKTTLMEKWVAAAV-REGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEEC----CTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC-
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHhhH-hcCCeeeEEEeCCC
Confidence 4677777 459999999999999994 77888776666653
No 58
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.95 E-value=0.68 Score=44.62 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=34.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
.+||+.++..- |-|.||||+++.++..| ...|+++.+..=+|
T Consensus 3 ~~g~l~I~~~~---kgGvGKTt~a~~la~~l-~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 3 ARGRLKVFLGA---APGVGKTYAMLQAAHAQ-LRQGVRVMAGVVET 44 (228)
T ss_dssp CCCCEEEEEES---STTSSHHHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred CCceEEEEEEC---CCCCcHHHHHHHHHHHH-HHCCCCEEEEEeCC
Confidence 46888766653 66999999999999999 57899988777776
No 59
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.80 E-value=0.36 Score=44.02 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=30.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
+|++|++.|+ -|.||||.+--|++.|. + +.++|||.-.+
T Consensus 1 ~~~~i~~~G~----~g~GKtt~~~~l~~~l~---~---~~~~~Ep~~~~ 39 (241)
T 2ocp_A 1 GPRRLSIEGN----IAVGKSTFVKLLTKTYP---E---WHVATEPVATW 39 (241)
T ss_dssp CCEEEEEEEC----TTSSHHHHHHHHHHHCT---T---SEEECCCGGGT
T ss_pred CCeEEEEEcC----CCCCHHHHHHHHHHHcC---C---Ceeeecchhhh
Confidence 3789999997 69999999999988883 2 35688885443
No 60
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=86.66 E-value=0.52 Score=49.21 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.+++|+++|. -|+|||||+..|+..| +..|+++.+.
T Consensus 99 ~p~vIlivG~----~G~GKTTt~~kLA~~l-~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGI----QGSGKTTTVAKLARYF-QKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECC----TTSSHHHHHHHHHHHH-HTTTCCEEEE
T ss_pred CCeEEEEECc----CCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 4679999885 5999999999999999 4779887654
No 61
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=85.89 E-value=0.4 Score=43.08 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=31.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlG 115 (507)
+.|++|.++| |.|.||||+.--|++-+...+.......-|.|.-|
T Consensus 6 ~~g~~i~l~G----psGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~ 50 (208)
T 3tau_A 6 ERGLLIVLSG----PSGVGKGTVREAVFKDPETSFDYSISMTTRLPREG 50 (208)
T ss_dssp CCCCEEEEEC----CTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred CCCcEEEEEC----cCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence 5699999988 67999999998887766311333334455666544
No 62
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.72 E-value=0.59 Score=44.14 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=34.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~ 117 (507)
..|.++++|| |.|.||||..++++.-+. .-|+++.+. +|+.+.-
T Consensus 10 ~~G~i~litG----~mGsGKTT~ll~~~~r~~-~~g~kVli~--~~~~d~r 53 (223)
T 2b8t_A 10 KIGWIEFITG----PMFAGKTAELIRRLHRLE-YADVKYLVF--KPKIDTR 53 (223)
T ss_dssp -CCEEEEEEC----STTSCHHHHHHHHHHHHH-HTTCCEEEE--EECCCGG
T ss_pred CCcEEEEEEC----CCCCcHHHHHHHHHHHHH-hcCCEEEEE--EeccCch
Confidence 4599999998 579999999999998884 668887643 7777643
No 63
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.43 E-value=0.69 Score=42.87 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=34.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
+.|++|+++|+ -|.||||.+--|++.|+ . |.+. +..|+|.-.|
T Consensus 24 ~~g~~i~i~G~----~GsGKsT~~~~l~~~l~-~-~~~~-~~~~~p~~~~ 66 (229)
T 4eaq_A 24 AMSAFITFEGP----EGSGKTTVINEVYHRLV-K-DYDV-IMTREPGGVP 66 (229)
T ss_dssp CCCEEEEEECC----TTSCHHHHHHHHHHHHT-T-TSCE-EEECTTTTCH
T ss_pred CCCeEEEEEcC----CCCCHHHHHHHHHHHHh-c-CCCc-eeecCCCCCc
Confidence 57999999996 49999999999999995 5 6654 5678886443
No 64
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.67 E-value=0.71 Score=44.64 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=28.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.|+.|.+++ |-|+||||++.-|+..+ +..|++..+.
T Consensus 97 ~~~~i~i~g----~~G~GKTT~~~~la~~~-~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVG----LQGSGKTTTAAKLALYY-KGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEEC----CTTTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHH-HHcCCeEEEe
Confidence 578888885 45999999999999999 4667776543
No 65
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.44 E-value=0.51 Score=41.00 Aligned_cols=41 Identities=20% Similarity=0.411 Sum_probs=30.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
.|++|+++|+ -|.||||.+--|++.|+ |.+ +..+++|.-++
T Consensus 3 ~~~~I~l~G~----~GsGKsT~~~~L~~~l~---g~~-~~~~~~~~~~~ 43 (204)
T 2v54_A 3 RGALIVFEGL----DKSGKTTQCMNIMESIP---ANT-IKYLNFPQRST 43 (204)
T ss_dssp CCCEEEEECC----TTSSHHHHHHHHHHTSC---GGG-EEEEESSCTTS
T ss_pred CCcEEEEEcC----CCCCHHHHHHHHHHHHC---CCc-eEEEecCCCCC
Confidence 4889999996 59999999988877661 333 45578876443
No 66
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=84.30 E-value=0.87 Score=44.29 Aligned_cols=35 Identities=29% Similarity=0.230 Sum_probs=28.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
++.|.+++ |-|+||||++.-|+..+ ...|+++.+.
T Consensus 98 ~~vi~i~G----~~G~GKTT~~~~la~~~-~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVG----VQGTGKTTTAGKLAYFY-KKKGFKVGLV 132 (297)
T ss_dssp SEEEEEEC----SSCSSTTHHHHHHHHHH-HHTTCCEEEE
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 78888875 45999999999999999 4778876654
No 67
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.92 E-value=0.83 Score=47.23 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=28.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
.++.|.+++ |-|+||||++..|+..|. ..|+++.+
T Consensus 97 ~~~vi~i~G----~~GsGKTT~~~~LA~~l~-~~g~~Vll 131 (425)
T 2ffh_A 97 DRNLWFLVG----LQGSGKTTTAAKLALYYK-GKGRRPLL 131 (425)
T ss_dssp SSEEEEEEC----CTTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 477888875 369999999999999994 66777654
No 68
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=83.85 E-value=0.5 Score=40.30 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+++|+++|. .|.||||++--|++.|+
T Consensus 3 ~~~i~l~G~----~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGG----SSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECC----TTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 679999996 69999999999888773
No 69
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.36 E-value=0.91 Score=39.86 Aligned_cols=45 Identities=29% Similarity=0.375 Sum_probs=33.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~ 117 (507)
|+.|.++| |-|.||||+.--|..-+....|.....+-|.|.-|-+
T Consensus 1 ~~ii~l~G----psGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~ 45 (186)
T 3a00_A 1 SRPIVISG----PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp CCCEEEES----SSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc
Confidence 34566665 6799999999888877643577777788888887643
No 70
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=83.12 E-value=0.76 Score=47.28 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.+.|++++ | -|+|||||+..|+..+. ..|+++.+.
T Consensus 99 ~~vI~ivG--~--~GvGKTTla~~La~~l~-~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVG--I--QGSGKTTTAAKLARYIQ-KRGLKPALI 133 (432)
T ss_dssp CCCEEEEC--C--SSSSTTHHHHHHHHHHH-HHHCCEEEE
T ss_pred CeEEEEEC--C--CCCCHHHHHHHHHHHHH-HcCCeEEEE
Confidence 46888888 3 39999999999999995 678887654
No 71
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=82.83 E-value=0.6 Score=42.48 Aligned_cols=37 Identities=41% Similarity=0.474 Sum_probs=29.2
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
+|.+-|+ -|.||||.+--|++.| ...|.++ +..|||.
T Consensus 2 fI~~EG~----DGsGKsTq~~~L~~~L-~~~g~~v-~~treP~ 38 (197)
T 3hjn_A 2 FITFEGI----DGSGKSTQIQLLAQYL-EKRGKKV-ILKREPG 38 (197)
T ss_dssp EEEEECS----TTSSHHHHHHHHHHHH-HHTTCCE-EEEESSC
T ss_pred EEEEECC----CCCCHHHHHHHHHHHH-HHCCCcE-EEEECCC
Confidence 3444454 5999999999999999 4778874 6789995
No 72
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.48 E-value=0.75 Score=39.49 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.+++|+++|+ -|.||||++--|++.|
T Consensus 3 ~~~~~I~l~G~----~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGH----PATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEES----TTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHc
Confidence 35789999996 5999999998888777
No 73
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.08 E-value=1.2 Score=43.06 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=20.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+..+|.||| |.|.||||++--|.+.|+
T Consensus 4 ~~~iIgItG----~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTG----SSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEES----CC---CCTHHHHHHHHHH
T ss_pred CceEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 456899998 789999999999999885
No 74
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=81.84 E-value=1.4 Score=37.63 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=29.0
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
++|++||. -|.||||.+--|++-|. ..|... +..|+|+
T Consensus 1 ~~I~l~G~----~GsGKsT~~~~L~~~l~-~~g~~~-i~~d~~~ 38 (195)
T 2pbr_A 1 MLIAFEGI----DGSGKTTQAKKLYEYLK-QKGYFV-SLYREPG 38 (195)
T ss_dssp CEEEEECS----TTSCHHHHHHHHHHHHH-HTTCCE-EEEESSC
T ss_pred CEEEEECC----CCCCHHHHHHHHHHHHH-HCCCeE-EEEeCCC
Confidence 36788886 59999999999999884 457664 4568774
No 75
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=81.49 E-value=1 Score=42.04 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=28.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
.+++|+++|+ -|.||||++.-|++.|. ..|...+
T Consensus 3 ~~~lIvl~G~----pGSGKSTla~~La~~L~-~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGL----PGVGKSTFSKNLAKILS-KNNIDVI 36 (260)
T ss_dssp CCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCEEEEEEcC----CCCCHHHHHHHHHHHHH-hCCCEEE
Confidence 3679999997 59999999999999984 6777655
No 76
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=81.32 E-value=5.5 Score=40.83 Aligned_cols=92 Identities=22% Similarity=0.278 Sum_probs=49.0
Q ss_pred ccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHh---hHHHHHHHHhhcCCc-E
Q 010562 379 EKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV---NLARHIANTKAYGAN-V 453 (507)
Q Consensus 379 EKF~dIKCR~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~---NL~kHIeni~~fGvp-v 453 (507)
|+|. +-+..|+. .|++|+|.-+.- | ..+.||. ...+|+..++..|+| +
T Consensus 132 ~~f~--~~~~~~~~~aD~~ilVvDa~~-----g--------------------~~e~sf~~~~qt~e~l~~~~~~~vp~i 184 (467)
T 1r5b_A 132 KGYV--TNMINGASQADIGVLVISARR-----G--------------------EFEAGFERGGQTREHAVLARTQGINHL 184 (467)
T ss_dssp ------------TTSCSEEEEEEECST-----T--------------------HHHHTTSTTCCHHHHHHHHHHTTCSSE
T ss_pred HHHH--HHHHhhcccCCEEEEEEeCCc-----C--------------------ccccccCCCCcHHHHHHHHHHcCCCEE
Confidence 4553 34455554 899999985541 1 1122332 456788888899998 9
Q ss_pred EEEecCCCCCC----HHHHH----HHHHHHHHc-CCC---e--EEEcccccccCcCcccC
Q 010562 454 VVAVNMFATDS----KAELN----AVRNAAMAA-GAF---D--AVVCSHHAHGGKGAVSD 499 (507)
Q Consensus 454 VVAIN~F~tDT----~~Ei~----~v~~~~~~~-g~~---~--~~~~~~wa~GG~Ga~~~ 499 (507)
||++|+-.-.+ ++.++ .+++++++. |.. . ++.++ +.-|+|-.+.
T Consensus 185 ivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vS--A~~g~~i~~l 242 (467)
T 1r5b_A 185 VVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVS--AYTGQNVKDR 242 (467)
T ss_dssp EEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECB--TTTTBTTSSC
T ss_pred EEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecc--cccccccccc
Confidence 99999976532 33333 356666666 653 2 33333 3446665443
No 77
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.11 E-value=0.9 Score=38.72 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|++|+++|+ -|.||||++--|++.|+
T Consensus 3 ~~~I~i~G~----~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGV----PGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECC----TTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHHH
Confidence 679999996 69999999999988885
No 78
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=80.87 E-value=1.4 Score=40.50 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=32.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FG 119 (507)
..|+++++|| |-|.||||..++++.-+ ...|+++.+ =+|+...-+|
T Consensus 6 ~~g~i~v~~G----~mgsGKTT~ll~~a~r~-~~~g~kV~v--~k~~~d~r~~ 51 (191)
T 1xx6_A 6 DHGWVEVIVG----PMYSGKSEELIRRIRRA-KIAKQKIQV--FKPEIDNRYS 51 (191)
T ss_dssp TCCEEEEEEC----STTSSHHHHHHHHHHHH-HHTTCCEEE--EEEC------
T ss_pred CCCEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCEEEE--EEeccCccch
Confidence 4599999998 67999999999998887 356877654 3577664443
No 79
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=80.69 E-value=1.6 Score=39.47 Aligned_cols=38 Identities=18% Similarity=0.032 Sum_probs=30.5
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
+.|.++| |.|.||||+.-.|.+.| ...|.+....-+.|
T Consensus 7 ~~i~i~G----~sGsGKTTl~~~l~~~l-~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAA----WSGTGKTTLLKKLIPAL-CARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEEC----CTTSCHHHHHHHHHHHH-HHTTCCEEEEEECC
T ss_pred eEEEEEe----CCCCCHHHHHHHHHHhc-cccCCceeEEeeCC
Confidence 4777777 67999999999999999 47788876666655
No 80
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=80.00 E-value=1.2 Score=46.97 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=27.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.+.|++++- -|+|||||+.-|+..|. ..|+++.+.
T Consensus 101 ~~vI~ivG~----~GvGKTTl~~kLA~~l~-~~G~kVllV 135 (504)
T 2j37_W 101 QNVIMFVGL----QGSGKTTTCSKLAYYYQ-RKGWKTCLI 135 (504)
T ss_dssp -EEEEEECS----TTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 457777764 29999999999999995 668876544
No 81
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=79.98 E-value=1.7 Score=38.99 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=29.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~F 118 (507)
|+++++|| |.|.||||..++++.-+ ...|+++.+ =+|+...-+
T Consensus 3 g~i~vi~G----~~gsGKTT~ll~~~~~~-~~~g~~v~~--~~~~~d~r~ 45 (184)
T 2orw_A 3 GKLTVITG----PMYSGKTTELLSFVEIY-KLGKKKVAV--FKPKIDSRY 45 (184)
T ss_dssp CCEEEEEE----STTSSHHHHHHHHHHHH-HHTTCEEEE--EEEC-----
T ss_pred cEEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCeEEE--Eeecccccc
Confidence 78999998 57999999999998877 355777553 356665443
No 82
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=79.97 E-value=0.83 Score=38.62 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.2
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++|++|| +-|.||||++--|++.|+
T Consensus 3 ~~I~l~G----~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVG----ARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEES----CTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 5789998 579999999998888773
No 83
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=79.91 E-value=1.2 Score=40.40 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=31.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
.|+-+.++.++. +.|.||||++.-|+.+| + .|+++.+.=-.|.
T Consensus 10 ~~~~~~i~~~~G-kgGvGKTTl~~~La~~l-~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 10 HGMASMIVVFVG-TAGSGKTTLTGEFGRYL-E-DNYKVAYVNLDTG 52 (262)
T ss_dssp TTCCCEEEEEEC-STTSSHHHHHHHHHHHH-T-TTSCEEEEECCSS
T ss_pred CCcceEEEEEeC-CCCCCHHHHHHHHHHHH-H-CCCeEEEEeCCCC
Confidence 354444444443 67999999999999999 5 7988776655653
No 84
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.53 E-value=1.4 Score=37.98 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=27.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.|++|.+||. -|.||||++--|++.|. ..|...+
T Consensus 3 ~~g~~i~l~G~----~GsGKST~~~~L~~~l~-~~g~~~i 37 (179)
T 2pez_A 3 MRGCTVWLTGL----SGAGKTTVSMALEEYLV-CHGIPCY 37 (179)
T ss_dssp -CCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHHHh-hCCCcEE
Confidence 45899999996 59999999999988873 3465544
No 85
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=79.30 E-value=0.99 Score=38.80 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++.|+++|. .|.||||++.-|++.|
T Consensus 4 ~~~~i~l~G~----~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGL----MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECS----TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3678999985 7999999999888877
No 86
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=78.97 E-value=0.59 Score=40.93 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=28.9
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
++|.|+| |-|.||||.+--|++.|. ..|.+ +.++|+|.
T Consensus 1 ~~I~i~G----~~GsGKsTl~~~L~~~l~-~~g~~-v~~~~~~~ 38 (214)
T 1gtv_A 1 MLIAIEG----VDGAGKRTLVEKLSGAFR-AAGRS-VATLAFPR 38 (214)
T ss_dssp CEEEEEE----EEEEEHHHHHHHHHHHHH-EEEEE-EEEEESSE
T ss_pred CEEEEEc----CCCCCHHHHHHHHHHHHH-hcCCe-EEEEeecC
Confidence 4788888 469999999999999994 45544 45678764
No 87
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=78.89 E-value=1.7 Score=36.87 Aligned_cols=30 Identities=30% Similarity=0.253 Sum_probs=23.8
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
++|+++|+ -|.||||.+--|++.|+ ..|..
T Consensus 2 ~~I~i~G~----~GsGKsT~~~~L~~~l~-~~g~~ 31 (194)
T 1nks_A 2 KIGIVTGI----PGVGKSTVLAKVKEILD-NQGIN 31 (194)
T ss_dssp EEEEEEEC----TTSCHHHHHHHHHHHHH-TTTCC
T ss_pred eEEEEECC----CCCCHHHHHHHHHHHHH-hcCce
Confidence 47888885 69999999999999995 34443
No 88
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=78.69 E-value=1.5 Score=45.76 Aligned_cols=49 Identities=16% Similarity=0.035 Sum_probs=29.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEec--CCCCCCcccc
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGI 120 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lR--ePSlGP~FGi 120 (507)
.++.|+|++ .+-|+||||+|..|+.+| ++.|+++.+.=- ++|+.-.||.
T Consensus 325 ~~~~~~~~~---~~~g~Gktt~a~~lA~~l-~~~g~~vllvD~Dp~~~l~~~l~~ 375 (589)
T 1ihu_A 325 NEHGLIMLM---GKGGVGKTTMAAAIAVRL-ADMGFDVHLTTSDPAAHLSMTLNG 375 (589)
T ss_dssp TSCEEEEEE---CSTTSSHHHHHHHHHHHH-HHTTCCEEEEESCCC---------
T ss_pred cCCeEEEEe---cCCCCChhhHHHHHHHHH-HHCCCcEEEEeCCCcccHhHHhcc
Confidence 345555543 466999999999999999 588999877422 3566666765
No 89
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=78.59 E-value=1.2 Score=38.23 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=22.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++++|+++|. -|.||||++--|++.|+
T Consensus 8 ~~~~I~l~G~----~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGG----PGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEEC----TTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 5789999995 69999999988888773
No 90
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.58 E-value=1.4 Score=38.55 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=27.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlG 115 (507)
.|++|.++| |.|.||||+.--|..-+...........-|+|..|
T Consensus 4 ~g~~i~i~G----psGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 4 MRKTLVLLG----AHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CCCEEEEEC----CTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 588999988 67999999988876655211223333445666654
No 91
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=77.77 E-value=1 Score=38.58 Aligned_cols=27 Identities=41% Similarity=0.487 Sum_probs=22.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.|+.|+++|. -|.||||++--|++.|+
T Consensus 3 ~g~~I~l~G~----~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 3 VGQAVIFLGP----PGAGKGTQASRLAQELG 29 (186)
T ss_dssp CEEEEEEECC----TTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 4788999995 69999999988887763
No 92
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=77.75 E-value=1.2 Score=37.34 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=19.9
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++|+++| |-|.||||++--|++.|
T Consensus 2 ~~i~l~G----~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEG----PDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEEC----SSSSSHHHHHHHHHHHH
T ss_pred eEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 3688888 56999999998888777
No 93
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=77.71 E-value=5.8 Score=33.28 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=37.8
Q ss_pred HHHHhhHHHHHHHHhh--cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCC-CeEEEccc
Q 010562 433 EAGCVNLARHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGA-FDAVVCSH 488 (507)
Q Consensus 433 ~~G~~NL~kHIeni~~--fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~-~~~~~~~~ 488 (507)
..-+.++.+.++.++. .++|+|++.|+..-..+...+.+++++++.|+ . +..++.
T Consensus 116 ~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa 173 (198)
T 3t1o_A 116 AESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFP-VLEAVA 173 (198)
T ss_dssp HHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSC-EEECBG
T ss_pred HHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCce-EEEEec
Confidence 3446677777777744 68999999999764433444556788888888 5 444443
No 94
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=77.54 E-value=1.3 Score=40.09 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=24.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHH-HHHhhhcCCcEEEEecCCCCCCc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKVVTCLRQPSQGPT 117 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~-qaL~~~lGk~a~~~lRePSlGP~ 117 (507)
+.|++|.++| |-|.||||+.--|+ .-+. .+....-..-|.|.-|-.
T Consensus 25 ~~G~ii~l~G----p~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~g~~ 71 (231)
T 3lnc_A 25 SVGVILVLSS----PSGCGKTTVANKLLEKQKN-NIVKSVSVTTRAARKGEK 71 (231)
T ss_dssp ECCCEEEEEC----SCC----CHHHHHHC-----CEEECCCEESSCCCTTCC
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHhcCCC-CcccccccCCCCCCcccc
Confidence 4689999988 56999999998887 5442 222223344566665533
No 95
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=77.54 E-value=1.1 Score=38.16 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=18.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+++|+++|. -|.||||++--|++.|+
T Consensus 4 ~~~~I~l~G~----~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGP----FGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECC----C----CHHHHHHHHHST
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 4789999996 59999999988877663
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=77.28 E-value=1.8 Score=45.95 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=30.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.+++++||| |.|.|||||...|...+ ...|++..+|
T Consensus 203 ~~~~~~I~G----~pGTGKTt~i~~l~~~l-~~~g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTG----GPGTGKSTTTKAVADLA-ESLGLEVGLC 238 (574)
T ss_dssp TCSEEEEEC----CTTSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred hCCEEEEEc----CCCCCHHHHHHHHHHHH-HhcCCeEEEe
Confidence 367999999 89999999999999999 4778877665
No 97
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=77.27 E-value=2.2 Score=40.59 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=32.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FG 119 (507)
..|++.++|| |-|.||||..++++.-. ..-|+++.+. +|+.+.-+|
T Consensus 26 ~~G~l~vitG----~MgsGKTT~lL~~a~r~-~~~g~kVli~--k~~~d~R~g 71 (214)
T 2j9r_A 26 QNGWIEVICG----SMFSGKSEELIRRVRRT-QFAKQHAIVF--KPCIDNRYS 71 (214)
T ss_dssp CSCEEEEEEC----STTSCHHHHHHHHHHHH-HHTTCCEEEE--ECC------
T ss_pred CCCEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCEEEEE--EeccCCcch
Confidence 5699999998 67999999999998887 4668876643 588775554
No 98
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=76.33 E-value=1.5 Score=38.76 Aligned_cols=33 Identities=36% Similarity=0.326 Sum_probs=27.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
+.|++|.++| |.|.||||++--|++.|. .-|..
T Consensus 23 ~~g~~i~l~G----~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTG----LSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp SCCEEEEEEC----STTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hcCce
Confidence 5699999998 469999999999999984 44654
No 99
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.16 E-value=1.6 Score=39.02 Aligned_cols=45 Identities=33% Similarity=0.407 Sum_probs=29.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
.|+.|.+.| |-|.||||+.--|..-+....|.......|.|..|-
T Consensus 3 ~g~~i~lvG----psGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~ 47 (198)
T 1lvg_A 3 GPRPVVLSG----PSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE 47 (198)
T ss_dssp --CCEEEEC----CTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc
Confidence 477788877 569999999887765542234555455567777663
No 100
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=75.93 E-value=1.5 Score=38.70 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|+.|+++|. -|.||||++.-|++.|
T Consensus 23 ~~~~~i~l~G~----~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGY----MGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECC----TTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcC----CCCCHHHHHHHHHHHc
Confidence 45889999985 5999999998888777
No 101
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=75.71 E-value=2 Score=39.94 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=33.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
.|++|+++| |.|.||||+..-|.+-+...+....-.+-|+|.-|-
T Consensus 18 ~g~~ivl~G----PSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 18 GRKTLVLIG----ASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp SCCEEEEEC----CTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CCCEEEEEC----cCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 589999987 679999999888876652234445556778887763
No 102
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=74.81 E-value=2.6 Score=39.64 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=28.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
..|.+++.|+ -|-||||.++||+.-.. ..|+++.+.
T Consensus 27 ~~g~i~v~tG-----~GkGKTTaA~GlalRA~-g~G~rV~~v 62 (196)
T 1g5t_A 27 ERGIIIVFTG-----NGKGKTTAAFGTAARAV-GHGKNVGVV 62 (196)
T ss_dssp CCCCEEEEES-----SSSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred cCceEEEECC-----CCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 5688888764 69999999999998773 679987654
No 103
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=74.51 E-value=2.7 Score=37.47 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=28.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.|++|+++|+ -|.||||++--|++.|+...|.+.+
T Consensus 23 ~~~~~i~~~G~----~GsGKsT~~~~l~~~l~~~~g~~~~ 58 (211)
T 1m7g_A 23 QRGLTIWLTGL----SASGKSTLAVELEHQLVRDRRVHAY 58 (211)
T ss_dssp SSCEEEEEECS----TTSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHHhccccCCcEE
Confidence 56999999986 6999999999999998424465543
No 104
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=74.35 E-value=5.8 Score=40.56 Aligned_cols=25 Identities=32% Similarity=0.195 Sum_probs=22.6
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEE
Q 010562 432 VEAGCVNLARHIANTKAYGANVVVA 456 (507)
Q Consensus 432 l~~G~~NL~kHIeni~~fGvpvVVA 456 (507)
-++.++|+++||+++.++|+++|+.
T Consensus 99 r~~~ie~~k~~i~~aa~lGi~~v~~ 123 (386)
T 3bdk_A 99 RDALIENYKTSIRNVGAAGIPVVCY 123 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6788999999999999999998764
No 105
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=74.24 E-value=1.6 Score=37.22 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+++|+++|. -|.||||++--|++.|
T Consensus 3 ~~~I~l~G~----~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGG----PGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHHh
Confidence 578999985 5999999998887776
No 106
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=74.19 E-value=2 Score=37.17 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|++|.++|. -|.||||++--|+.-+
T Consensus 4 ~~g~~i~l~G~----~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGP----SGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECS----TTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHhh
Confidence 45899999984 6999999987776544
No 107
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=74.02 E-value=1.7 Score=37.34 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.++.|+++|. -|.||||++--|++.|
T Consensus 10 ~~~~i~i~G~----~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGT----PGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECS----TTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeC----CCCCHHHHHHHHHHHh
Confidence 4788999994 6999999998888776
No 108
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=73.68 E-value=2.2 Score=36.42 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..|+.|+++|. -|.||||++--|++-+
T Consensus 6 ~~g~~i~l~G~----~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGV----SGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECS----TTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcC----CCCCHHHHHHHHHHhh
Confidence 45899999984 6999999987776655
No 109
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=73.65 E-value=2.9 Score=36.46 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=26.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
+.++-|+++| |.|.||||++..+++.+. .-|.+
T Consensus 50 ~~~~~~ll~G----~~G~GKT~la~~l~~~~~-~~~~~ 82 (242)
T 3bos_A 50 DGVQAIYLWG----PVKSGRTHLIHAACARAN-ELERR 82 (242)
T ss_dssp CSCSEEEEEC----STTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCe
Confidence 4678899987 569999999999999995 44544
No 110
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=73.36 E-value=2 Score=36.99 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+++|+++|. -|.||||++--|++.|+
T Consensus 11 ~~~~I~l~G~----~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 11 KCKIIFIIGG----PGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HSCEEEEEEC----TTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 3679999995 69999999988888773
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=73.27 E-value=2.2 Score=42.67 Aligned_cols=41 Identities=29% Similarity=0.375 Sum_probs=31.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
.|.+|+|+| |-|.|||||.--|..-+. .-....++++.+|.
T Consensus 122 ~~g~i~I~G----ptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 122 PRGLVLVTG----PTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPI 162 (356)
T ss_dssp SSEEEEEEC----STTSCHHHHHHHHHHHHH-HHCCCEEEEEESSC
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhccc-CCCCcEEEEccCcH
Confidence 355999998 569999999999988884 54345577888875
No 112
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=72.76 E-value=9.9 Score=33.06 Aligned_cols=55 Identities=5% Similarity=0.019 Sum_probs=36.4
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHc-CC-CeEEEccccccc
Q 010562 438 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAA-GA-FDAVVCSHHAHG 492 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~--tDT~~Ei~~v~~~~~~~-g~-~~~~~~~~wa~G 492 (507)
...+-|+.+++.|+++.|...-.+ .|+.+|++.+.+++++. |+ ..+.+.....-|
T Consensus 80 ~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g 138 (182)
T 3can_A 80 LILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIG 138 (182)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC--
T ss_pred HHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccC
Confidence 344445555667888877665444 48999999999999998 97 545444333333
No 113
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=72.44 E-value=2.1 Score=37.79 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|++|.++|. -|.||||++--|+.-+
T Consensus 27 ~~g~~i~l~G~----~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGV----SGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECC----TTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHhh
Confidence 56999999984 6999999998887665
No 114
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=72.25 E-value=1.5 Score=44.98 Aligned_cols=38 Identities=29% Similarity=0.248 Sum_probs=29.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
..|++|.|-|+ -|.||||.+--|++.|. ..| ++..|||
T Consensus 47 ~~~~fIt~EG~----dGsGKTT~~~~Lae~L~-~~g---vv~trEP 84 (376)
T 1of1_A 47 PTLLRVYIDGP----HGMGKTTTTQLLVALGS-RDD---IVYVPEP 84 (376)
T ss_dssp CEEEEEEECSS----TTSSHHHHHHHHHC-----CC---EEEECCC
T ss_pred CCceEEEEECC----CCCCHHHHHHHHHHHhh-hCC---EEEEeCC
Confidence 46889999996 69999999999988884 445 8899999
No 115
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=72.07 E-value=1.7 Score=36.76 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=20.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++.|.++|. -|.||||++--|+..|
T Consensus 4 ~~~i~l~G~----~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGP----MGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECC----TTSCHHHHHHHHHHHT
T ss_pred CCeEEEECC----CCCCHHHHHHHHHHHh
Confidence 678888884 6999999988777665
No 116
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=72.00 E-value=1.4 Score=41.98 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=31.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRe 111 (507)
.|+.|+++| |.|.||||+++-|++.+...+.-.++..-|+
T Consensus 33 ~g~~ilI~G----psGsGKStLA~~La~~g~~iIsdDs~~v~~~ 72 (205)
T 2qmh_A 33 YGLGVLITG----DSGVGKSETALELVQRGHRLIADDRVDVYQQ 72 (205)
T ss_dssp TTEEEEEEC----CCTTTTHHHHHHHHTTTCEEEESSEEEEEEC
T ss_pred CCEEEEEEC----CCCCCHHHHHHHHHHhCCeEEecchhheeec
Confidence 588999998 5699999999999887755566666666665
No 117
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=71.95 E-value=2.5 Score=40.53 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..+++|+++| |-|.||||++--|.+.+
T Consensus 31 ~~~~livl~G----~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGG----QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEEC----CTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4588999999 57999999998887766
No 118
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=71.92 E-value=2.5 Score=35.83 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..++|+++|. -|.||||++--|++.|
T Consensus 5 ~~~~I~l~G~----~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGG----PGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEES----TTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3578999995 6999999998888776
No 119
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=71.78 E-value=1.4 Score=44.48 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=32.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhH-hhHHHHHhhhcCCcEEEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTT-VGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTtt-IGL~qaL~~~lGk~a~~~lReP 112 (507)
++|++|.+-|+ -|.||||++ -=|++.|. .-|. ++..|||
T Consensus 10 ~~~~~I~iEG~----~GaGKTT~~~~~L~~~l~-~~g~--vv~trEP 49 (341)
T 1osn_A 10 MGVLRIYLDGA----YGIGKTTAAEEFLHHFAI-TPNR--ILLIGEP 49 (341)
T ss_dssp EEEEEEEEEES----SSSCTTHHHHHHHHTTTT-SGGG--EEEECCC
T ss_pred CCceEEEEeCC----CCCCHHHHHHHHHHHHHh-hCCc--EEEEeCC
Confidence 56899999996 799999999 88888774 4452 8999998
No 120
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=71.38 E-value=3.6 Score=41.82 Aligned_cols=87 Identities=23% Similarity=0.292 Sum_probs=54.2
Q ss_pred CCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhh--cCCcEE-EEecCCCCCCH
Q 010562 389 SGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKA--YGANVV-VAVNMFATDSK 465 (507)
Q Consensus 389 sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~--fGvpvV-VAIN~F~tDT~ 465 (507)
.|.+|+++|||.... ++..-|.|.. |+|+ ++.. -.+...+..+++ .|++|+ +++|.|.-|.+
T Consensus 250 ~g~~p~~vILv~~~~-~g~i~~~~~~----~~p~------l~~~----i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~ 314 (349)
T 2obn_A 250 RGSQPTQLVLVHRAG-QTHNGNNPHV----PIPP------LPEV----IRLYETVASGGGAFGTVPVVGIALNTAHLDEY 314 (349)
T ss_dssp HHHCCSEEEEEEETT-CCBCSSCTTS----BCCC------HHHH----HHHHHHHHHTTTTSCCCCEEEEEEECTTSCHH
T ss_pred HHcCCCeEEEEECCC-CceECCCCcc----CCCC------HHHH----HHHHHHHHHhhccCCCCcEEEEEEECCCCCHH
Confidence 356899999998542 3333344432 3332 2211 133334444455 788877 67899999988
Q ss_pred HHHHHHHHHHHHcCCCeEEEcccccccC
Q 010562 466 AELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 466 ~Ei~~v~~~~~~~g~~~~~~~~~wa~GG 493 (507)
++-+.++++-++.|++ + .+.+..|-
T Consensus 315 ~~~~~~~~ie~~~glP-v--~d~~r~g~ 339 (349)
T 2obn_A 315 AAKEAIAHTIAETGLP-C--TDVVRFGA 339 (349)
T ss_dssp HHHHHHHHHHHHHCSC-E--ECHHHHCS
T ss_pred HHHHHHHHHHHHHCCC-E--EEEecCCH
Confidence 8888888888889998 3 35555543
No 121
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=71.25 E-value=4 Score=36.27 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|.+|.++| |-|.||||++--|+..|.
T Consensus 20 ~~~~~i~i~G----~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDG----LSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 4688999998 579999999999988773
No 122
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=71.08 E-value=2.3 Score=36.70 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=26.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
+.|+.++++| |-|.||||++..++..+...-|..
T Consensus 36 ~~g~~~~l~G----~~G~GKTtL~~~i~~~~~~~~g~~ 69 (180)
T 3ec2_A 36 EEGKGLTFVG----SPGVGKTHLAVATLKAIYEKKGIR 69 (180)
T ss_dssp GGCCEEEECC----SSSSSHHHHHHHHHHHHHHHSCCC
T ss_pred cCCCEEEEEC----CCCCCHHHHHHHHHHHHHHHcCCe
Confidence 3488899988 779999999999988883233443
No 123
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=71.07 E-value=4.2 Score=39.74 Aligned_cols=43 Identities=28% Similarity=0.215 Sum_probs=34.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSl 114 (507)
.+|+.|.+++ |-|+||||+..-|+..+ ...|.++.+.=..|+.
T Consensus 54 ~~~~~i~i~G----~~g~GKSTl~~~l~~~~-~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 54 GNTLRLGVTG----TPGAGKSTFLEAFGMLL-IREGLKVAVIAVDPSS 96 (341)
T ss_dssp SCSEEEEEEE----CTTSCHHHHHHHHHHHH-HHTTCCEEEEEECCC-
T ss_pred CCCEEEEEEc----CCCCCHHHHHHHHHHHH-HhcCCeEEEEeecCCc
Confidence 5688888877 77999999999999999 4678887776666643
No 124
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.05 E-value=2 Score=37.48 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+..++|+++|. -|.||||++--|++.|
T Consensus 13 ~~~~~I~l~G~----~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGG----PGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECS----TTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 45679999994 6999999988887766
No 125
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=70.07 E-value=1.5 Score=44.07 Aligned_cols=39 Identities=28% Similarity=0.230 Sum_probs=29.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
+.|++|.|-|+ -|.||||.+-=|++.|. ..| ++..|||.
T Consensus 2 ~~~~fI~~EG~----dGsGKTT~~~~La~~L~-~~g---v~~trEPg 40 (331)
T 1e2k_A 2 PTLLRVYIDGP----HGMGKTTTTQLLVALGS-RDD---IVYVPEPM 40 (331)
T ss_dssp CEEEEEEECSC----TTSSHHHHHHHHTC-----CC---EEEECCCH
T ss_pred CccEEEEEECC----CCCCHHHHHHHHHHHhh-hCC---EEEEeCCC
Confidence 35788888886 69999999998888884 444 88999995
No 126
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=70.03 E-value=2.4 Score=37.08 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
+.++.|++||. -|.||||++--|++.
T Consensus 8 ~~~~~I~l~G~----~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGT----PGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECS----TTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHh
Confidence 46889999996 699999999888876
No 127
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=69.97 E-value=2.5 Score=36.36 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=19.8
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+|+++|+ -|.||||++--|++.|+
T Consensus 2 ~I~i~G~----~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGT----VGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECC----TTSCHHHHHHHHHHHHC
T ss_pred EEEEECC----CccCHHHHHHHHHHhcC
Confidence 5777775 69999999998888774
No 128
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=69.94 E-value=2.5 Score=37.08 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..++|+++|. -|.||||++--|++.|
T Consensus 17 ~~~~I~l~G~----~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGV----SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECS----TTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3678999985 5999999988887766
No 129
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=69.80 E-value=3.1 Score=36.04 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=21.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|++|.++| |-|.||||+.--|+.-+
T Consensus 5 ~~g~ii~l~G----p~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISA----PSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEEC----CTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEEC----cCCCCHHHHHHHHHhhC
Confidence 3588999988 56999999987775443
No 130
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=69.40 E-value=4.7 Score=39.50 Aligned_cols=42 Identities=29% Similarity=0.254 Sum_probs=31.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
++...|.+|| +-|.||||++.-|+.+| ...|++..+.==.|+
T Consensus 77 ~~~~~I~i~G----~~G~GKSTl~~~L~~~l-~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 77 GNAHRVGITG----VPGVGKSTAIEALGMHL-IERGHRVAVLAVDPS 118 (355)
T ss_dssp CCSEEEEEEC----CTTSSHHHHHHHHHHHH-HTTTCCEEEEEEC--
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHH-HhCCCceEEEecCCC
Confidence 3455677777 37999999999999999 477998776655554
No 131
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=69.30 E-value=2.3 Score=36.53 Aligned_cols=25 Identities=44% Similarity=0.460 Sum_probs=20.3
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|++|| +.|.||||++--|++.|+
T Consensus 3 ~~I~l~G----~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVG----LPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEEC----STTSSHHHHHHHHHHHHT
T ss_pred CeEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 4688887 469999999988888774
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=68.57 E-value=2.6 Score=36.25 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+.|++|+++| |-|.||||+.--|+.
T Consensus 7 ~~g~~i~l~G----~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 7 LGGNILLLSG----HPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTEEEEEEE----CTTSCHHHHHHHHHT
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHh
Confidence 4689999999 569999998766643
No 133
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=68.32 E-value=2.8 Score=37.43 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|+.|+++|+ -|.||||.+--|++.|
T Consensus 3 ~~~~I~l~G~----~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGP----PGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 5789999996 4999999998888877
No 134
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=68.26 E-value=11 Score=37.94 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=38.2
Q ss_pred hhHHHHHHHHhhcCCc-EEEEecCCCCCC----HHH----HHHHHHHHHHcCC----CeEEEcccccccCcCc
Q 010562 437 VNLARHIANTKAYGAN-VVVAVNMFATDS----KAE----LNAVRNAAMAAGA----FDAVVCSHHAHGGKGA 496 (507)
Q Consensus 437 ~NL~kHIeni~~fGvp-vVVAIN~F~tDT----~~E----i~~v~~~~~~~g~----~~~~~~~~wa~GG~Ga 496 (507)
....+|+..++.+|+| +||++|+..-.. ++. .+.+++++++.|. ..++.++.+. |+|-
T Consensus 130 ~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~--g~~v 200 (435)
T 1jny_A 130 GQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPS--GDNI 200 (435)
T ss_dssp CHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTT--TBTT
T ss_pred hHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeeccc--Cccc
Confidence 3678899999999985 899999975433 333 3456677777773 1255555443 5554
No 135
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=67.88 E-value=5.6 Score=35.15 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=26.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.|.+++++| |.|.||||++.-++..+. ..|.+++
T Consensus 21 ~~G~~~~i~G----~~GsGKTtl~~~~~~~~~-~~~~~v~ 55 (247)
T 2dr3_A 21 PERNVVLLSG----GPGTGKTIFSQQFLWNGL-KMGEPGI 55 (247)
T ss_dssp ETTCEEEEEE----CTTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHHH-hcCCeEE
Confidence 5699999998 569999999988877763 4444433
No 136
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=67.70 E-value=1.7 Score=44.06 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+|+|+|+| |-|.||||+++-|++.|+
T Consensus 38 ~~~~lIvI~G----PTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMG----ATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEEC----STTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEEC----CCCCCHHHHHHHHHHHCC
Confidence 4578999998 459999999999998874
No 137
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=67.15 E-value=3 Score=37.29 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+++|+++|. -|.||||.+--|++.|+
T Consensus 3 ~~~~~I~l~G~----~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 3 ADPLKVMISGA----PASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCSCCEEEEES----TTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 35678999995 69999999999988883
No 138
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=67.14 E-value=2.8 Score=38.79 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.+++|+++|. -|.||||++--|++.|
T Consensus 30 ~~~~~i~l~G~----~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQ----SGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESC----GGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECC----CCCCHHHHHHHHHHhc
Confidence 45789999994 6999999988887766
No 139
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=66.87 E-value=3.8 Score=35.89 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=22.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..+++|+++|. -|.||||++--|++.|
T Consensus 18 ~~~~~I~l~G~----~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGP----PGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 45789999996 6999999998888777
No 140
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=66.80 E-value=5.6 Score=34.52 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.+++++| |-|.||||+..-|+..+
T Consensus 21 ~~G~~~~i~G----~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTG----EPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 5689999987 56999999999998766
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=66.74 E-value=4.4 Score=36.11 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=23.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|.+|.+.| |-|.||||++--|+.-+.
T Consensus 20 ~~g~~v~I~G----~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSG----APGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEEC----CTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 5688999988 679999999988877773
No 142
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=66.33 E-value=21 Score=38.23 Aligned_cols=94 Identities=16% Similarity=0.260 Sum_probs=54.6
Q ss_pred ccccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 010562 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (507)
Q Consensus 377 GaEKF~dIKCR~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvp-vV 454 (507)
|-|+|. +-...++. .|++|+|.-+..=.+..+... ......|+..++..|+| +|
T Consensus 254 G~e~f~--~~~~~~~~~aD~~llVVDa~~g~~e~~~~~----------------------~~qt~e~l~~~~~lgi~~iI 309 (611)
T 3izq_1 254 GHRDFV--PNAIMGISQADMAILCVDCSTNAFESGFDL----------------------DGQTKEHMLLASSLGIHNLI 309 (611)
T ss_dssp SSSCHH--HHHTTTSSCCSEEEEEEECSHHHHHTTCCT----------------------TSHHHHHHHHHHTTTCCEEE
T ss_pred CCcccH--HHHHHHHhhcCceEEEEECCCCcccccchh----------------------hhHHHHHHHHHHHcCCCeEE
Confidence 346664 44445544 899999986653222222211 12567899999999987 99
Q ss_pred EEecCCCCCC--HHHH----HHHHHHHHHcCCC----eEEEcccccccCcCc
Q 010562 455 VAVNMFATDS--KAEL----NAVRNAAMAAGAF----DAVVCSHHAHGGKGA 496 (507)
Q Consensus 455 VAIN~F~tDT--~~Ei----~~v~~~~~~~g~~----~~~~~~~wa~GG~Ga 496 (507)
|++|+...-. ++.+ +.+.+++++.|.. .++.++.+ -|+|-
T Consensus 310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~--tG~gI 359 (611)
T 3izq_1 310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGF--SGEGV 359 (611)
T ss_dssp EEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTT--TCTTT
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecc--cCCCc
Confidence 9999976433 3333 3444555555541 24555444 34553
No 143
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=66.13 E-value=7.3 Score=38.74 Aligned_cols=62 Identities=24% Similarity=0.325 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCCcEEEEecC------CCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcCcccCCCCCCC
Q 010562 440 ARHIANTKAYGANVVVAVNM------FATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSDLPPLDL 505 (507)
Q Consensus 440 ~kHIeni~~fGvpvVVAIN~------F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~~~~~~~ 505 (507)
++=++.++++|..|++.=+. |....++-.+-+.+....-.++ +++| ..||.|+...||-||.
T Consensus 35 ~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~-aI~~---~rGGyga~rlLp~LD~ 102 (311)
T 1zl0_A 35 EATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDIT-AVWC---LRGGYGCGQLLPGLDW 102 (311)
T ss_dssp HHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEE-EEEE---SCCSSCGGGGTTTCCH
T ss_pred HHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCC-EEEE---ccCCcCHHHHhhccch
Confidence 34455566799999987543 3444444555666666666664 7766 6899999999999884
No 144
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=66.12 E-value=2 Score=43.19 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=32.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
+.|++|.|-|+ -|.||||.+--|++.|. . +.. ++..|||.
T Consensus 5 ~~~~fI~~EG~----dGaGKTT~~~~La~~L~-~-~~~-v~~trEPg 44 (334)
T 1p6x_A 5 VTIVRIYLDGV----YGIGKSTTGRVMASAAS-G-GSP-TLYFPEPM 44 (334)
T ss_dssp EEEEEEEEECS----TTSSHHHHHHHHHSGGG-C-SSC-EEEECCCH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHhc-c-CCc-EEEEeCCC
Confidence 45889999996 69999999999998884 3 222 88899993
No 145
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=66.11 E-value=7.4 Score=32.35 Aligned_cols=51 Identities=14% Similarity=0.054 Sum_probs=32.3
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccc
Q 010562 437 VNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 437 ~NL~kHIeni~~---fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~~ 488 (507)
.++.+.++.+++ -++|++|++|+..-..+.+ .+.+++++++.++. +..++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 156 (181)
T 2efe_B 101 ERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETSA 156 (181)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECCS
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEEC
Confidence 344455555554 3899999999976533222 35567788888885 554443
No 146
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=65.90 E-value=2.2 Score=39.44 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
.++++|++.|+ -|.||||.+--|++.|. + +..++||
T Consensus 22 ~~~~~I~ieG~----~GsGKST~~~~L~~~l~---~---~~~i~ep 57 (263)
T 1p5z_B 22 TRIKKISIEGN----IAAGKSTFVNILKQLCE---D---WEVVPEP 57 (263)
T ss_dssp -CCEEEEEECS----TTSSHHHHHTTTGGGCT---T---EEEECCC
T ss_pred cCceEEEEECC----CCCCHHHHHHHHHHhcC---C---CEEEecc
Confidence 46899999997 59999999988877662 2 4556665
No 147
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=65.66 E-value=2.7 Score=37.72 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.+|..|+++|+ -|.||||.+--|++.|
T Consensus 3 ~~~~~I~l~G~----~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGA----PGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEEC----TTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECC----CCCCHHHHHHHHHHHh
Confidence 45778999985 4999999998888777
No 148
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=65.42 E-value=3.9 Score=40.64 Aligned_cols=104 Identities=11% Similarity=0.091 Sum_probs=74.2
Q ss_pred CeEEeecccccccccccccccccccCCCCcceE---EEEeeehHHHhcCCCCCccCCCCCcccccc------cCHHH-HH
Q 010562 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCA---VIVATIRALKMHGGGPQVVAGKPLDHAYLN------ENVAL-VE 433 (507)
Q Consensus 364 dyVVTEAGFGaDlGaEKF~dIKCR~sgl~Pdav---VlVaTvRALK~HGG~~~~~~g~pL~~~l~~------enl~a-l~ 433 (507)
||+||-.-|..|. +++|++ +||..|+.--.+ --+.+.+.+++.- ..+|-.+|+++.+ .|.++ .+
T Consensus 178 df~iTQ~ffD~~~-~~~f~~-~~r~~Gi~vPIi~GImPi~s~~~~~~~~----~~~Gv~iP~~l~~~l~~~~dd~~~~~~ 251 (304)
T 3fst_A 178 NRAITQFFFDVES-YLRFRD-RCVSAGIDVEIIPGILPVSNFKQAKKLA----DMTNVRIPAWMAQMFDGLDDDAETRKL 251 (304)
T ss_dssp CEEEECCCSCHHH-HHHHHH-HHHHTTCCSCEECEECCCSCHHHHHHHH----HHHTCCCCHHHHHHHTTCTTCHHHHHH
T ss_pred CEEEeCccCCHHH-HHHHHH-HHHhcCCCCcEEEEecccCCHHHHHHHH----HcCCCcCCHHHHHHHHhcCCCHHHHHH
Confidence 9999999998876 677887 899999852221 1245666666552 1234445654432 35666 67
Q ss_pred HHHhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 434 AGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 434 ~G~~NL~kHIeni~~fGvpvV--VAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
.|++--...++.+...|+|-| ..+|+. +.+.+.|+.+|..
T Consensus 252 ~Gi~~a~e~~~~L~~~gv~GiH~yt~n~~--------~~~~~I~~~lg~~ 293 (304)
T 3fst_A 252 VGANIAMDMVKILSREGVKDFHFYTLNRA--------EMSYAICHTLGVR 293 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECTTCC--------HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCH--------HHHHHHHHHhCCC
Confidence 899999999999999999876 456766 6788888888886
No 149
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=65.35 E-value=12 Score=38.03 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=29.3
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCCC----HHHH----HHHHHHHHHcCC
Q 010562 438 NLARHIANTKAYGAN-VVVAVNMFATDS----KAEL----NAVRNAAMAAGA 480 (507)
Q Consensus 438 NL~kHIeni~~fGvp-vVVAIN~F~tDT----~~Ei----~~v~~~~~~~g~ 480 (507)
....|+..++..|+| +||++|+-.-.+ ++.. +.+.+++++.|.
T Consensus 142 qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~ 193 (439)
T 3j2k_7 142 QTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGF 193 (439)
T ss_pred hHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcc
Confidence 567889999999999 999999976422 2223 334455556664
No 150
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=65.34 E-value=13 Score=34.83 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccC
Q 010562 439 LARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 439 L~kHIeni~~fGvpvV-VAIN---~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG 493 (507)
.++.++.+++.|+++| +.++ .|..+.-+.++.+.++|.+.|.. +++.-|...|+
T Consensus 33 ~~~~~~~i~~~G~N~VRi~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~-Vild~H~~~~~ 90 (294)
T 2whl_A 33 ASTAIPAIAEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMV-AVVEVHDATGR 90 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTC
T ss_pred hHHHHHHHHHcCCCEEEEEecCCCccCccHHHHHHHHHHHHHHCCCE-EEEEeccCCCC
Confidence 3467888999999998 7776 68888889999999999999996 77777766554
No 151
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.06 E-value=2.9 Score=39.01 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=19.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++|+|+|. -|.||||++.-|++.+
T Consensus 2 ~li~I~G~----~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGP----TCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC----CCcCHHHHHHHHHhcC
Confidence 46788874 6999999998888777
No 152
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=63.56 E-value=14 Score=29.62 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=24.9
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcc
Q 010562 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT-~~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
.++|+++++|+-.-.. +...+.+.+++++.|+. +..++
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S 145 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIETS 145 (166)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEEC
T ss_pred CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEec
Confidence 4899999999976322 12234556777888886 44443
No 153
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=63.24 E-value=1.3 Score=42.67 Aligned_cols=153 Identities=20% Similarity=0.273 Sum_probs=77.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC------ccccccCCCCCCce-----------e
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP------TFGIKGGAAGGGYS-----------Q 131 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP------~FGiKGGAaGGGys-----------Q 131 (507)
..-||++| |.|.|||+++..+.+... +.+. .++.+.-.++-. .||-..|+--|-.. -
T Consensus 25 ~~~vLi~G----e~GtGKt~lAr~i~~~~~-~~~~-~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g 98 (304)
T 1ojl_A 25 DATVLIHG----DSGTGKELVARALHACSA-RSDR-PLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 98 (304)
T ss_dssp TSCEEEES----CTTSCHHHHHHHHHHHSS-CSSS-CCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTS
T ss_pred CCcEEEEC----CCCchHHHHHHHHHHhCc-ccCC-CeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCC
Confidence 44578877 669999999988888763 4333 345554444422 26654333222111 1
Q ss_pred eecCcccccccchhhhHHHHHHhHHHHHHHhhhhc-----------------ccc---------CChhHhhhcc------
Q 010562 132 VIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFH-----------------EAS---------QSDKALFNRL------ 179 (507)
Q Consensus 132 ViPmediNLHfTGD~HAItaAnNLlaA~iDn~i~h-----------------~n~---------~~~~~l~~rl------ 179 (507)
++=+|||+. +.. ...+.|..+++++-|. .|. .-+++||.||
T Consensus 99 ~L~LDEi~~-l~~------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~ 171 (304)
T 1ojl_A 99 TLFLDEIGD-ISP------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIE 171 (304)
T ss_dssp EEEEESCTT-CCH------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEE
T ss_pred EEEEecccc-CCH------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEe
Confidence 344566542 111 2334444556654321 111 0135688887
Q ss_pred CCCCCcCCcchhHHHHHHHHhhcCC-CCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccee
Q 010562 180 CPPNKEGERSFSNIMFRRLKKLGIS-KTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKI 245 (507)
Q Consensus 180 ~p~~~~g~r~f~~~~~~rl~klgi~-~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I 245 (507)
+|+.++-+..........|+++.-. ...+..++++.+..+... .|+. |-|.|+++
T Consensus 172 lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~-------~wpG----nvReL~~~ 227 (304)
T 1ojl_A 172 MPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY-------DWPG----NIRELENA 227 (304)
T ss_dssp CCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC-------CCSS----HHHHHHHH
T ss_pred ccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC-------CCCC----CHHHHHHH
Confidence 5655433333333333334443221 123456888888777654 3653 66777765
No 154
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=63.21 E-value=3.5 Score=33.96 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.1
Q ss_pred cEEEEeecCCCCCCCCcchhHhhH
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGL 93 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL 93 (507)
++|+++|. -|.||||++--|
T Consensus 2 ~~I~l~G~----~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGM----PGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECC----TTSCHHHHHHHH
T ss_pred cEEEEECC----CCCCHHHHHHHH
Confidence 37888885 699999987766
No 155
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=62.69 E-value=3.4 Score=41.59 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=23.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+..++|+|+| |.|.||||+++-|++.++
T Consensus 8 ~~~~~i~i~G----ptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMG----PTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEEC----CTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEEC----CCccCHHHHHHHHHHhCC
Confidence 4567898887 559999999999998884
No 156
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=62.56 E-value=5.6 Score=39.78 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.|++|+|++ |.|.||||++.-|+..+. ..|.+++
T Consensus 61 ~~G~ii~I~G----~pGsGKTtLal~la~~~~-~~g~~vl 95 (356)
T 1u94_A 61 PMGRIVEIYG----PESSGKTTLTLQVIAAAQ-REGKTCA 95 (356)
T ss_dssp ETTSEEEEEC----STTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEE
Confidence 5799999998 789999999999988873 5565544
No 157
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=62.53 E-value=5.4 Score=42.34 Aligned_cols=27 Identities=37% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.++++++|| |.|.|||||...+...|.
T Consensus 163 ~~~~~vi~G----~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 163 TRRISVISG----GPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp TBSEEEEEC----CTTSTHHHHHHHHHHHHH
T ss_pred cCCCEEEEe----CCCCCHHHHHHHHHHHHH
Confidence 378999999 789999999999999984
No 158
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=61.33 E-value=3.2 Score=41.95 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+++|+|+| |.|.||||+++-|++.++
T Consensus 3 ~~~i~i~G----ptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVG----PTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEEC----CTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEEC----CCcCCHHHHHHHHHHhCc
Confidence 56888887 569999999999999884
No 159
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=61.24 E-value=6.7 Score=39.14 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=42.9
Q ss_pred HHHHHHHHhhcCCcEEEEecCCC-----CCCHH-HHHHHHHHHHHcCCCeEEEcccccccCcCcccCCCCCCC
Q 010562 439 LARHIANTKAYGANVVVAVNMFA-----TDSKA-ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSDLPPLDL 505 (507)
Q Consensus 439 L~kHIeni~~fGvpvVVAIN~F~-----tDT~~-Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~~~~~~~ 505 (507)
+++=++.++++|..|++.=+.+. +-|++ -.+-+.+....-.++ +++| +.||.|+...||-||.
T Consensus 33 ~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~-aI~~---~rGG~g~~rlL~~lD~ 101 (336)
T 3sr3_A 33 FERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVS-CIMS---TIGGMNSNSLLPYIDY 101 (336)
T ss_dssp HHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEE-EEEE---SCCCSCGGGGGGGSCH
T ss_pred HHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCC-EEEE---ccccccHHHHhhhcCh
Confidence 33445556678999998755432 33444 455566665656674 7777 5799999999999884
No 160
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=60.96 E-value=14 Score=30.38 Aligned_cols=50 Identities=10% Similarity=-0.007 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhhc----CCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 437 VNLARHIANTKAY----GANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 437 ~NL~kHIeni~~f----GvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
.++...++.++++ ++|+|+++|+..-..+.+ .+..++++.+.+.. +..++
T Consensus 94 ~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S 149 (175)
T 2nzj_A 94 ESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIETS 149 (175)
T ss_dssp HHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEECB
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEEe
Confidence 3444444445443 899999999976433222 33456677778875 44443
No 161
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=60.96 E-value=47 Score=30.39 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=45.2
Q ss_pred cccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEec---CCCC---CCHHH-------HHHHHHHHHHcCCCeEEEccc
Q 010562 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVN---MFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 425 ~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN---~F~t---DT~~E-------i~~v~~~~~~~g~~~~~~~~~ 488 (507)
..++.+..++.+..+++.|+..+.+|.+.||..- .|.. ++++. +..+.+.|++.|+. +.+-+|
T Consensus 92 ~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~ 167 (287)
T 3kws_A 92 LSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTS-VIFEPL 167 (287)
T ss_dssp TBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCC-EEECCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 3466777888899999999999999999988732 2321 45443 44455667788997 777654
No 162
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=60.88 E-value=5.1 Score=36.29 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..++.|+++|+ -|.||||.+.-|++.|
T Consensus 14 ~~~~~I~l~G~----~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGP----PGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 34678999986 4999999999888877
No 163
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=60.69 E-value=4.5 Score=37.55 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|..|.++| |.|.||||++--|++.|+
T Consensus 25 ~~g~~I~I~G----~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 25 AIAPVITVDG----PSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TTSCEEEEEC----CTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHhcC
Confidence 4578888887 679999999988887774
No 164
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=60.47 E-value=6.9 Score=41.45 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=26.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
..+.+|+| |.|.|||||...+...|...-+++..+
T Consensus 195 ~~~~li~G----ppGTGKT~~~~~~i~~l~~~~~~~ilv 229 (624)
T 2gk6_A 195 RPLSLIQG----PPGTGKTVTSATIVYHLARQGNGPVLV 229 (624)
T ss_dssp CSEEEEEC----CTTSCHHHHHHHHHHHHHTSSSCCEEE
T ss_pred CCCeEEEC----CCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 45888888 789999999999988884223444443
No 165
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=60.31 E-value=35 Score=31.82 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=44.2
Q ss_pred ccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-----cCCCC---CCHHH-------HHHHHHHHHHcCCCeEEEcccc
Q 010562 426 NENVALVEAGCVNLARHIANTKAYGANVVVAV-----NMFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 426 ~enl~al~~G~~NL~kHIeni~~fGvpvVVAI-----N~F~t---DT~~E-------i~~v~~~~~~~g~~~~~~~~~w 489 (507)
.++.+.-++.++.+++.|+.++.+|.+.||.. .+|+. ++++. +..+.+.|++.|+. +++-+++
T Consensus 96 ~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~ 173 (309)
T 2hk0_A 96 SEDAAVRAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGIN-LCIEVLN 173 (309)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCE-EEEeecc
Confidence 45556677888999999999999999999953 33422 33332 34445566778996 7777775
No 166
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=60.09 E-value=4.1 Score=36.59 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++++|+++|. -|.||||.+--|++.|
T Consensus 6 ~~~~I~l~G~----~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGA----PGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEEC----TTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 4689999996 6999999988887766
No 167
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=60.08 E-value=4.7 Score=35.63 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|..|.+.| |.|.||||+.-.|+..+
T Consensus 31 ~~Ge~v~L~G----~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNG----DLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEEC----STTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHhC
Confidence 5688888887 78999999999998776
No 168
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=59.60 E-value=17 Score=34.08 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccC
Q 010562 441 RHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 441 kHIeni~~fGvpvV-VAIN---~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG 493 (507)
+.++.+++.|+++| +.++ .+..+..+.++.+.++|.+.|.. +++.-|...|.
T Consensus 36 ~~~~~lk~~G~N~VRi~~~~~~~w~~~~~~~ld~~v~~a~~~Gi~-Vild~h~~~~~ 91 (302)
T 1bqc_A 36 QAFADIKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLI-CMLEVHDTTGY 91 (302)
T ss_dssp THHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEEGGGTTT
T ss_pred HHHHHHHHcCCCEEEEEccCCcccCCCCHHHHHHHHHHHHHCCCE-EEEEeccCCCC
Confidence 56888899999999 7777 57777888999999999999996 88887776553
No 169
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=59.59 E-value=5.5 Score=34.92 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=21.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|..|.++| |-|.||||++--|+.-+
T Consensus 4 ~~~~~i~i~G----~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAG----GTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 5688888988 45999999988777666
No 170
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=59.57 E-value=16 Score=35.01 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=33.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC--CCeEEEcc
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAG--AFDAVVCS 487 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g--~~~~~~~~ 487 (507)
++.+.+..++..++|+|+++|+-.-..+.+++.+.++++..+ .. +..++
T Consensus 103 ~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~-~~~~S 153 (301)
T 1u0l_A 103 IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYP-IVKTS 153 (301)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSC-EEECC
T ss_pred HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCc-EEEEE
Confidence 455556666668999999999977656666666677777665 54 44443
No 171
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=59.37 E-value=8.5 Score=38.35 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=45.7
Q ss_pred CHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCC-----CCHHH-HHHHHHHHHHcCCCeEEEcccccccCcCcccCCC
Q 010562 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT-----DSKAE-LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSDLP 501 (507)
Q Consensus 428 nl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~t-----DT~~E-i~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~~~ 501 (507)
+.+.+++|++ .++++|..|++.=|.+.. -|++| .+-+.+....-.++ +++| +.||.|+...||
T Consensus 28 ~~~~~~~~~~-------~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~-aI~~---~rGG~g~~rlL~ 96 (331)
T 4e5s_A 28 STENRRLAVK-------RLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVK-AILT---TLGGYNSNGLLK 96 (331)
T ss_dssp CHHHHHHHHH-------HHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEE-EEEE---SCCCSCGGGGGG
T ss_pred CHHHHHHHHH-------HHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCC-EEEE---ccccccHHHHHh
Confidence 3455555554 455799999997665443 35544 45555555556664 7766 689999999999
Q ss_pred CCCC
Q 010562 502 PLDL 505 (507)
Q Consensus 502 ~~~~ 505 (507)
-||.
T Consensus 97 ~lD~ 100 (331)
T 4e5s_A 97 YLDY 100 (331)
T ss_dssp GCCH
T ss_pred hcCh
Confidence 9884
No 172
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=58.71 E-value=8 Score=39.34 Aligned_cols=36 Identities=22% Similarity=0.136 Sum_probs=31.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
++|-|+||+ |.-.-||||||..|.++| ++.|.++..
T Consensus 151 ~~k~i~v~G---TD~~VGK~~ts~~L~~~l-~~~G~~a~~ 186 (349)
T 2obn_A 151 PCRRVLTVG---TDMAIGKMSTSLELHWAA-KLRGWRSKF 186 (349)
T ss_dssp SSEEEEEEE---SSSSSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred cceEEEEcC---CCccccceeHHHHHHHHH-HhcCCcEEE
Confidence 578899998 455699999999999999 588999875
No 173
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=58.33 E-value=9.7 Score=36.13 Aligned_cols=78 Identities=19% Similarity=0.197 Sum_probs=49.3
Q ss_pred cceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 010562 393 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 472 (507)
Q Consensus 393 PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~ 472 (507)
-|.+-+|.-+.++|-. - ++.-.+++.++.+- ....++||++-.-.. |++|+....
T Consensus 85 Adevd~vinig~~~~g--~----------~~~v~~ei~~v~~a----------~~~~~lkvIlet~~l---~~e~i~~a~ 139 (220)
T 1ub3_A 85 ADEVDMVLHLGRAKAG--D----------LDYLEAEVRAVREA----------VPQAVLKVILETGYF---SPEEIARLA 139 (220)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHH----------STTSEEEEECCGGGS---CHHHHHHHH
T ss_pred CCEEEecccchhhhCC--C----------HHHHHHHHHHHHHH----------HcCCCceEEEecCCC---CHHHHHHHH
Confidence 4677788888887621 1 22222333333332 334577777755443 589999999
Q ss_pred HHHHHcCCCeEEEcccccccCcC
Q 010562 473 NAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 473 ~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
+.|.++|+..+-.|+.|..||..
T Consensus 140 ~ia~eaGADfVKTsTGf~~~gat 162 (220)
T 1ub3_A 140 EAAIRGGADFLKTSTGFGPRGAS 162 (220)
T ss_dssp HHHHHHTCSEEECCCSSSSCCCC
T ss_pred HHHHHhCCCEEEeCCCCCCCCCC
Confidence 99999999745455668877654
No 174
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=58.32 E-value=9 Score=37.89 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHHHhhcCCcEEEEecCCC-----CCCHHH-HHHHHHHHHHcCCCeEEEcccccccCcCcccCCCCCCC
Q 010562 442 HIANTKAYGANVVVAVNMFA-----TDSKAE-LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSDLPPLDL 505 (507)
Q Consensus 442 HIeni~~fGvpvVVAIN~F~-----tDT~~E-i~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~~~~~~~ 505 (507)
=++.++++|..|++.=|.+. +-|++| .+-+.+....-.++ +++| +.||.|+...||-||.
T Consensus 35 ~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~-aI~~---~rGG~g~~rlL~~LD~ 100 (327)
T 4h1h_A 35 AVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVK-AILT---VIGGFNSNQLLPYLDY 100 (327)
T ss_dssp HHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEE-EEEE---SCCCSCGGGGGGGCCH
T ss_pred HHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCC-EEEE---cCCchhHHHHhhhcch
Confidence 34566789999999877543 335554 45555555556664 7766 5799999999999884
No 175
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=58.29 E-value=4.8 Score=40.66 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=27.1
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.++|+| |+|.||||+..-+...|. ..|++.+++
T Consensus 47 ~~li~G----~aGTGKT~ll~~~~~~l~-~~~~~~il~ 79 (459)
T 3upu_A 47 HVTING----PAGTGATTLTKFIIEALI-STGETGIIL 79 (459)
T ss_dssp EEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCCEEE
T ss_pred EEEEEe----CCCCCHHHHHHHHHHHHH-hcCCceEEE
Confidence 899998 799999999999999994 667743433
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=58.21 E-value=20 Score=36.56 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=33.7
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCC--CHHHHH----HHHHHHHHcCC----CeEEEcccc
Q 010562 438 NLARHIANTKAYGAN-VVVAVNMFATD--SKAELN----AVRNAAMAAGA----FDAVVCSHH 489 (507)
Q Consensus 438 NL~kHIeni~~fGvp-vVVAIN~F~tD--T~~Ei~----~v~~~~~~~g~----~~~~~~~~w 489 (507)
...+|+..++..|+| +||++|+-.-. ++++++ .+++++++.|. ..++.++.+
T Consensus 132 qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~ 194 (458)
T 1f60_A 132 QTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGW 194 (458)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTT
T ss_pred hHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecc
Confidence 566788888899997 89999996542 344443 35555666664 125555544
No 177
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=58.18 E-value=11 Score=32.09 Aligned_cols=54 Identities=11% Similarity=-0.011 Sum_probs=32.0
Q ss_pred HhhHHHHHHHHhh------cCCcEEEEecCCCCCC-HHH--HHHHHHHHHHcCCCeEEEccccc
Q 010562 436 CVNLARHIANTKA------YGANVVVAVNMFATDS-KAE--LNAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 436 ~~NL~kHIeni~~------fGvpvVVAIN~F~tDT-~~E--i~~v~~~~~~~g~~~~~~~~~wa 490 (507)
+.++.+.++.+++ .++|+||++|+..-.. +.+ .+.+.+++++.|+. +..++...
T Consensus 112 ~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~ 174 (208)
T 2yc2_C 112 FESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSANP 174 (208)
T ss_dssp HHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEECCC--
T ss_pred HHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEeccCC
Confidence 3455555555554 5899999999976543 222 35677888888875 55555443
No 178
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=57.99 E-value=17 Score=33.53 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=28.9
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEcc
Q 010562 449 YGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCS 487 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~-g~~~~~~~~ 487 (507)
-++|+||+.|+-.-..+.+++.+.+++++. ++. +..++
T Consensus 197 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~e~S 235 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQ-VVETS 235 (255)
T ss_dssp TTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCC-EEECB
T ss_pred CCCCEEEEEEcccccccHHHHHHHHHHHhcCCCe-EEEEE
Confidence 479999999998766677788888888864 665 44443
No 179
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=57.92 E-value=3.6 Score=35.23 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.|++++ |.|.||||++--|++.|+
T Consensus 6 ~i~i~G----~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIG----FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEEC----CTTSCHHHHHHHHHHHHT
T ss_pred EEEEEc----CCCCCHHHHHHHHHHHcC
Confidence 467766 479999999988887773
No 180
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=57.52 E-value=5 Score=33.72 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.3
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
++|+++|. .|.||||.+--|++
T Consensus 3 ~~I~i~G~----~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGC----PGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECC----TTSSHHHHHHHHHH
T ss_pred eEEEEecC----CCCCHHHHHHHHHh
Confidence 57888885 69999999888876
No 181
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=57.52 E-value=8.5 Score=32.24 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccc
Q 010562 437 VNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 437 ~NL~kHIeni~~---fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
.++.+.++.+++ .++|+||++|+..-..+. ..+.+.++|++.|+. +..++.
T Consensus 97 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa 152 (183)
T 2fu5_C 97 DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETSA 152 (183)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECCC
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEeC
Confidence 344555555554 489999999997643221 134456788888885 554443
No 182
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=57.40 E-value=15 Score=30.88 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=30.6
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcc
Q 010562 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 438 NL~kHIeni~~---fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
++...++.+++ -++|+|+++|+..-..+. +.+...+++++.++. +..++
T Consensus 106 ~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 159 (196)
T 3tkl_A 106 NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETS 159 (196)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEEC
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEe
Confidence 34444444443 489999999997643322 234567788888987 55444
No 183
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=57.19 E-value=8.7 Score=41.84 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=29.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.|++|++||+ -|.||||++--|++.|. ..|...+..
T Consensus 51 ~g~lIvLtGl----sGSGKSTlAr~La~~L~-~~G~~~v~l 86 (630)
T 1x6v_B 51 RGCTVWLTGL----SGAGKTTVSMALEEYLV-CHGIPCYTL 86 (630)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCEEEEEeC----CCCCHHHHHHHHHHHHH-hcCCeEEEe
Confidence 6889999997 59999999999999993 567776543
No 184
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=57.03 E-value=7.8 Score=32.96 Aligned_cols=50 Identities=16% Similarity=0.059 Sum_probs=31.7
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 437 VNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 437 ~NL~kHIeni~~---fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
.++.+.++.+++ .++|+||++|+-.-..+.+ .+.+++++++.|+. +..++
T Consensus 111 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 165 (189)
T 2gf9_A 111 AAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEAS 165 (189)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEE
Confidence 344455555555 4899999999976543222 34567788888875 54444
No 185
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=56.22 E-value=12 Score=31.16 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=30.8
Q ss_pred hHHHHHHHHhh----cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcc
Q 010562 438 NLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 438 NL~kHIeni~~----fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
++...++.++. .++|+||++|+..-..+. ..+.+++++++.|+. +..++
T Consensus 111 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 165 (195)
T 3bc1_A 111 NVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-YFETS 165 (195)
T ss_dssp THHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC-EEEEE
Confidence 44444444443 589999999997653321 234567788888886 44444
No 186
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=56.14 E-value=8.3 Score=33.12 Aligned_cols=39 Identities=10% Similarity=-0.068 Sum_probs=25.6
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccc
Q 010562 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~~ 488 (507)
.++|+|++.|+..-..+.+ .+.+.+++++.|+. +..++.
T Consensus 126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa 166 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVSA 166 (187)
T ss_dssp CCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECCS
T ss_pred CCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEee
Confidence 4899999999965422211 24456788888885 555554
No 187
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=55.98 E-value=5.2 Score=35.19 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=20.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|++|.+||. -|.||||++--|++.+
T Consensus 19 ~~~~~i~i~G~----~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGV----TNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEES----TTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHhc
Confidence 56889999985 4999999876665433
No 188
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=55.91 E-value=5.4 Score=41.45 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.8
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++|+|+| |.|.||||+++-|++.++
T Consensus 3 ~~i~i~G----ptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAG----TTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEE----CSSSSHHHHHHHHHHHHT
T ss_pred cEEEEEC----cchhhHHHHHHHHHHHCC
Confidence 5788888 569999999999999985
No 189
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=55.26 E-value=15 Score=29.82 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=29.8
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEccc
Q 010562 438 NLARHIANTKA---YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 438 NL~kHIeni~~---fGvpvVVAIN~F~tDT-~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
++.+.++.+++ .++|+++++|+..-.. ....+.+.+++++.|+. +..++.
T Consensus 93 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa 146 (170)
T 1g16_A 93 NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSA 146 (170)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECBT
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEEC
Confidence 33344444433 5899999999975421 12234456777888886 555443
No 190
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=55.23 E-value=6.9 Score=41.45 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+|..|++|++ .|.||||++..|++.|+
T Consensus 394 ~~~~I~l~Gl----sGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNS----LTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTT----CCSCHHHHHHHHHHHHT
T ss_pred cceEEEeccc----CCCCHHHHHHHHHHHHH
Confidence 6778999997 49999999999999995
No 191
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=55.08 E-value=13 Score=36.17 Aligned_cols=78 Identities=17% Similarity=0.122 Sum_probs=48.3
Q ss_pred cceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 010562 393 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 472 (507)
Q Consensus 393 PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~ 472 (507)
-|.+=+|--+.+||- |- .++-.+++.++.+-|. ..-++|++-.. |- |++|+...+
T Consensus 109 AdEIDmViNig~lk~--g~----------~~~v~~eI~~v~~a~~----------~~~lKVIlEt~-~L--t~eei~~a~ 163 (239)
T 3ngj_A 109 AEEVDMVINIGMVKA--KK----------YDDVEKDVKAVVDASG----------KALTKVIIECC-YL--TNEEKVEVC 163 (239)
T ss_dssp CSEEEEECCHHHHHT--TC----------HHHHHHHHHHHHHHHT----------TSEEEEECCGG-GS--CHHHHHHHH
T ss_pred CCEEEEEeehHHhcc--cc----------HHHHHHHHHHHHHHhc----------CCceEEEEecC-CC--CHHHHHHHH
Confidence 466777888888871 11 2333344444444332 12244544333 32 688999999
Q ss_pred HHHHHcCCCeEEEcccccccCcC
Q 010562 473 NAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 473 ~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
+.|.++|+..+-.|+.|..||.-
T Consensus 164 ~ia~~aGADfVKTSTGf~~ggAt 186 (239)
T 3ngj_A 164 KRCVAAGAEYVKTSTGFGTHGAT 186 (239)
T ss_dssp HHHHHHTCSEEECCCSSSSCCCC
T ss_pred HHHHHHCcCEEECCCCCCCCCCC
Confidence 99999999855566689888753
No 192
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=54.69 E-value=17 Score=30.85 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=26.0
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcc
Q 010562 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
.++|+||++|+..-..+. ..+.+.+++++.++. +..++
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 157 (206)
T 2bov_A 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS 157 (206)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEC
T ss_pred CCCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEe
Confidence 589999999998654322 245667788888885 44433
No 193
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=54.66 E-value=19 Score=29.66 Aligned_cols=40 Identities=8% Similarity=-0.090 Sum_probs=24.6
Q ss_pred hcCCcEEEEecCCCCC-CHHHHHHHHHHHH-HcCCCeEEEccc
Q 010562 448 AYGANVVVAVNMFATD-SKAELNAVRNAAM-AAGAFDAVVCSH 488 (507)
Q Consensus 448 ~fGvpvVVAIN~F~tD-T~~Ei~~v~~~~~-~~g~~~~~~~~~ 488 (507)
..++|+++++|+..-. .+...+.+.++++ ..+.. +..++.
T Consensus 114 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 155 (177)
T 1wms_A 114 PESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYP-YFETSA 155 (177)
T ss_dssp TTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCC-EEECCT
T ss_pred cCCCcEEEEEECCcccccccCHHHHHHHHHhcCCce-EEEEeC
Confidence 3789999999997642 1222345566777 34554 555544
No 194
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=54.35 E-value=15 Score=29.99 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHhh----cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcc
Q 010562 436 CVNLARHIANTKA----YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 436 ~~NL~kHIeni~~----fGvpvVVAIN~F~tDT--~~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
+.++...++.+.+ .++|+|+++|+-.-.. +-..+...+++++.++. +..++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 147 (169)
T 3q85_A 91 FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETS 147 (169)
T ss_dssp HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECB
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEec
Confidence 3444455555544 3899999999975431 12234556788888885 44443
No 195
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=54.27 E-value=11 Score=31.08 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccc
Q 010562 439 LARHIANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 439 L~kHIeni~~fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
+...+......++|++|++|+..-..+. ..+.+++++++.|+. +..++.
T Consensus 109 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 159 (179)
T 1z0f_A 109 WLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEASA 159 (179)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECCT
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEeC
Confidence 3344455555789999999997643222 235667888888885 554443
No 196
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=54.25 E-value=6.3 Score=34.93 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=18.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+++|.+||. .|.||||++--|++
T Consensus 4 ~~~I~i~G~----~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGG----IGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECC----TTSCHHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHHH
Confidence 568899985 69999998766654
No 197
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=53.80 E-value=36 Score=30.14 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=46.7
Q ss_pred CCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHH
Q 010562 363 GGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARH 442 (507)
Q Consensus 363 ~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kH 442 (507)
.||||=+.+-+.+.-..-++. .-|.+|+|++-.. ..+..+.+.
T Consensus 119 yD~viiD~p~~~~~~~~~~l~--------~ad~viiv~~~~~-----------------------------~~~~~~~~~ 161 (245)
T 3ea0_A 119 YDYIIVDFGASIDHVGVWVLE--------HLDELCIVTTPSL-----------------------------QSLRRAGQL 161 (245)
T ss_dssp CSEEEEEEESSCCTTHHHHGG--------GCSEEEEEECSSH-----------------------------HHHHHHHHH
T ss_pred CCEEEEeCCCCCchHHHHHHH--------HCCEEEEEecCcH-----------------------------HHHHHHHHH
Confidence 499999887665432222221 3577888874321 123355566
Q ss_pred HHHHhhcCC---cEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 443 IANTKAYGA---NVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 443 Ieni~~fGv---pvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
++.++++|. .+-|.+|++...+....+.++ +..|..
T Consensus 162 ~~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~---~~~~~~ 200 (245)
T 3ea0_A 162 LKLCKEFEKPISRIEIILNRADTNSRITSDEIE---KVIGRP 200 (245)
T ss_dssp HHHHHTCSSCCSCEEEEEESTTSCTTSCHHHHH---HHHTSC
T ss_pred HHHHHHhCCCccceEEEEecCCCCCCCCHHHHH---HHhCCC
Confidence 666777774 377899999877654333333 345654
No 198
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=53.74 E-value=13 Score=36.28 Aligned_cols=36 Identities=39% Similarity=0.386 Sum_probs=26.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
..|.+|.+.| |-|.||||+.--|+--+. .-+.+..+
T Consensus 100 ~~g~vi~lvG----~nGsGKTTll~~Lagll~-~~~g~V~l 135 (304)
T 1rj9_A 100 PKGRVVLVVG----VNGVGKTTTIAKLGRYYQ-NLGKKVMF 135 (304)
T ss_dssp CSSSEEEEEC----STTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHHH-hcCCEEEE
Confidence 3588998887 359999999999987774 44555443
No 199
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=53.70 E-value=13 Score=37.39 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=33.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
+.|.+|+|++ |.|.||||++.-++..+ ...|.+++..==|.|.-|
T Consensus 72 ~~G~li~I~G----~pGsGKTtlal~la~~~-~~~g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 72 PRGRITEIYG----PESGGKTTLALAIVAQA-QKAGGTCAFIDAEHALDP 116 (366)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCH
T ss_pred cCCcEEEEEc----CCCCChHHHHHHHHHHH-HHCCCeEEEEECCCChhH
Confidence 5799999987 56999999999998887 356766655555555444
No 200
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=53.63 E-value=14 Score=37.60 Aligned_cols=37 Identities=27% Similarity=-0.020 Sum_probs=30.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
-++|-|+||+... .-|||||+..|.++| .+.|.++..
T Consensus 167 i~~~ri~v~GTDt---~vGKt~t~~~L~~~l-~~~G~~v~~ 203 (350)
T 2g0t_A 167 KKIKVVGVFGTDC---VVGKRTTAVQLWERA-LEKGIKAGF 203 (350)
T ss_dssp CCSEEEEEEESSS---SSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ecceEEEEecCCC---CccCccHHHHHHHHH-HhcCCeEEE
Confidence 3578899999443 589999999999999 588998754
No 201
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=53.57 E-value=24 Score=28.77 Aligned_cols=51 Identities=8% Similarity=-0.006 Sum_probs=30.3
Q ss_pred HhhHHHHHHHHhh----cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcc
Q 010562 436 CVNLARHIANTKA----YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 436 ~~NL~kHIeni~~----fGvpvVVAIN~F~tDT--~~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
+.++...++.+.+ .++|+|++.|+-.-.. +-..+...+++.+.++. +..++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 144 (166)
T 3q72_A 88 FEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETS 144 (166)
T ss_dssp HHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEECB
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEec
Confidence 3444555555544 4899999999975332 22234456777888875 44443
No 202
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=53.47 E-value=9 Score=39.00 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCcEEEEecCCC-----CCCHHH-HHHHHHHHHHcCCCeEEEcccccccCcCcccCCCCCCC
Q 010562 440 ARHIANTKAYGANVVVAVNMFA-----TDSKAE-LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSDLPPLDL 505 (507)
Q Consensus 440 ~kHIeni~~fGvpvVVAIN~F~-----tDT~~E-i~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~~~~~~~ 505 (507)
++=++.++++|..|++.=|.+. +-|++| .+-+.+....-.++ +++| +.||.|+...||-||.
T Consensus 64 ~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~-aI~~---~rGGyga~rlLp~LD~ 131 (371)
T 3tla_A 64 FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDIT-CIMS---TIGGDNSNSLLPFLDY 131 (371)
T ss_dssp HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEE-EEEE---SCCCSCGGGGGGGSCH
T ss_pred HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCC-EEEE---ccccccHHHHHhhcCh
Confidence 3334555779999999865433 344544 44555555555664 7766 5799999999999884
No 203
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=53.44 E-value=18 Score=30.73 Aligned_cols=41 Identities=12% Similarity=-0.057 Sum_probs=27.6
Q ss_pred hcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcccc
Q 010562 448 AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 448 ~fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
..++|+||++|+..-..+. ..+.+.+++++.++. +..++..
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~ 167 (189)
T 1z06_A 125 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMP-LFETSAK 167 (189)
T ss_dssp CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEECCSS
T ss_pred CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCE-EEEEeCC
Confidence 4689999999997653221 234567788888886 5555444
No 204
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=53.05 E-value=20 Score=29.07 Aligned_cols=38 Identities=11% Similarity=-0.027 Sum_probs=24.0
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHc-CCCeEEEcc
Q 010562 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAA-GAFDAVVCS 487 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~-g~~~~~~~~ 487 (507)
.++|+++++|+..-..+.+ .+.+.+++++. +.. +..++
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~S 147 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCA-FLESS 147 (167)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCE-EEECB
T ss_pred CCCcEEEEEECccccccccCCHHHHHHHHHHccCCc-EEEec
Confidence 5899999999976432221 34556777776 554 44443
No 205
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=52.86 E-value=35 Score=32.26 Aligned_cols=87 Identities=13% Similarity=0.046 Sum_probs=56.5
Q ss_pred ccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-----cC
Q 010562 385 KCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-----NM 459 (507)
Q Consensus 385 KCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAI-----N~ 459 (507)
.|+..||+|-+++.+. |-. +. -.+..++-+.-++.++.++++|+.++.+|.++|+.. .+
T Consensus 73 ~l~~~gL~~~~i~~~~-------~~~-~~--------~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~ 136 (335)
T 2qw5_A 73 YLDSEGLENVKISTNV-------GAT-RT--------FDPSSNYPEQRQEALEYLKSRVDITAALGGEIMMGPIVIPYGV 136 (335)
T ss_dssp HHHHTTCTTCEEEEEC-------CCC-SS--------SCTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCTTC
T ss_pred HHHHCCCCcceeEEEe-------ccC-CC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEeccccCcccc
Confidence 4788899866554431 110 10 123345667778899999999999999999999642 45
Q ss_pred CCCC--------------CHHH-------HHHHHHHHHHcCCCeEEEccc
Q 010562 460 FATD--------------SKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 460 F~tD--------------T~~E-------i~~v~~~~~~~g~~~~~~~~~ 488 (507)
|+.. +++. +..+.+.|++.|+. .++-++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~ 185 (335)
T 2qw5_A 137 FPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKKVK-LAIEPI 185 (335)
T ss_dssp CCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEECCC
T ss_pred ccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeC
Confidence 5432 3333 34555667788996 777665
No 206
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=52.73 E-value=26 Score=30.88 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=35.8
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHcCC-CeEEEccccccc
Q 010562 438 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGA-FDAVVCSHHAHG 492 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~--tDT~~Ei~~v~~~~~~~g~-~~~~~~~~wa~G 492 (507)
...+-|+.+++.|+++.+-..-.+ .|+.+|++.+.+++++.|. ..+.+......|
T Consensus 148 ~~~~~i~~l~~~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (245)
T 3c8f_A 148 RTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELG 205 (245)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCS
T ss_pred HHHHHHHHHHhcCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccC
Confidence 344445666677888766543333 5889999999999999995 334443333333
No 207
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=52.36 E-value=6 Score=39.90 Aligned_cols=25 Identities=20% Similarity=0.594 Sum_probs=21.4
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++|+|+| |.|.||||++.-|++.|+
T Consensus 8 ~lI~I~G----ptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVG----PTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEEC----STTSSHHHHHHHHHHHTT
T ss_pred ceEEEEC----CCcCcHHHHHHHHHHHcC
Confidence 5888888 469999999999999884
No 208
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=52.31 E-value=7.4 Score=35.61 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=32.3
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
|+|+++| |.|.||||+.--|.+-+...++.....+=|.|--|=
T Consensus 2 RpIVi~G----PSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE 44 (186)
T 1ex7_A 2 RPIVISG----PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44 (186)
T ss_dssp CCEEEEC----CTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC
T ss_pred CEEEEEC----CCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC
Confidence 4577777 889999999888877663346666677889887663
No 209
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=52.30 E-value=8.6 Score=34.88 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.4
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.+.|..|.+++. .|.||||++--|++-|
T Consensus 13 ~~~~~~i~i~G~----~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGP----ASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECS----SCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 467889999985 6999999988777666
No 210
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=52.30 E-value=23 Score=29.86 Aligned_cols=39 Identities=13% Similarity=0.047 Sum_probs=25.6
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEccc
Q 010562 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT-~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
.++|++|++|+..-.. ....+.+++++++.|+. +..++.
T Consensus 125 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa 164 (190)
T 3con_A 125 DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIETSA 164 (190)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECCT
T ss_pred CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEEeC
Confidence 5899999999976432 11234456777888886 554443
No 211
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=52.26 E-value=8.4 Score=36.54 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=25.6
Q ss_pred hhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 59 VLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 59 ~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+++.+. -+.|.+|+|+| |-|.||||+.--|..-+
T Consensus 16 vl~~i~-i~~g~~v~i~G----p~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTG----PTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG-GCSSEEEEEEC----STTCSHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEEC----CCCccHHHHHHHHHHhC
Confidence 344443 35689999998 45999999988887766
No 212
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=52.12 E-value=12 Score=32.97 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=26.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHH-HHhhhcCCcEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~q-aL~~~lGk~a~~ 107 (507)
+.|.+++|+| +.|.||||.+.=++- ++ ...|+++..
T Consensus 28 ~~G~l~~i~G----~pG~GKT~l~l~~~~~~~-~~~~~~v~~ 64 (251)
T 2zts_A 28 PEGTTVLLTG----GTGTGKTTFAAQFIYKGA-EEYGEPGVF 64 (251)
T ss_dssp ETTCEEEEEC----CTTSSHHHHHHHHHHHHH-HHHCCCEEE
T ss_pred CCCeEEEEEe----CCCCCHHHHHHHHHHHHH-HhcCCCcee
Confidence 6799999999 579999999887653 33 244665543
No 213
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=52.06 E-value=73 Score=28.74 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=45.6
Q ss_pred ccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCC--CCHHHH----HHHHHHHHH-cCCCeEEEcccccc
Q 010562 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT--DSKAEL----NAVRNAAMA-AGAFDAVVCSHHAH 491 (507)
Q Consensus 424 l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAI-N~F~t--DT~~Ei----~~v~~~~~~-~g~~~~~~~~~wa~ 491 (507)
+..++-+..++.+..++++|+-.+.+|.+.||.- ..+.. +.++.+ +.+++.+.+ .|+. .++-+++..
T Consensus 76 l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~-l~lEn~~~~ 150 (285)
T 1qtw_A 76 LGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVT-AVIENTAGQ 150 (285)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCE-EEEECCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCE-EEEecCCCC
Confidence 3346677788899999999999999999999763 33332 334444 344555443 6885 778777643
No 214
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=52.06 E-value=10 Score=38.45 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=27.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
++.|-||+.+ ||||||-=|++.| ...|+++.
T Consensus 112 ~~~IaVTGTn------GKTTTt~ml~~iL-~~~g~~~~ 142 (451)
T 3lk7_A 112 SQLIGITGSN------GKTTTTTMIAEVL-NAGGQRGL 142 (451)
T ss_dssp SEEEEEECSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhcCCCEE
Confidence 5899999976 9999999999999 58898764
No 215
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=52.00 E-value=12 Score=36.37 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=26.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.|.+|.+.| |-|.|||||.--|+--+. .-+.+..
T Consensus 98 ~~g~vi~lvG----~nGsGKTTll~~Lag~l~-~~~g~V~ 132 (302)
T 3b9q_A 98 RKPAVIMIVG----VNGGGKTTSLGKLAHRLK-NEGTKVL 132 (302)
T ss_dssp SSCEEEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCcEEEEEc----CCCCCHHHHHHHHHHHHH-HcCCeEE
Confidence 4588999998 679999999998887773 4455443
No 216
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=51.80 E-value=8.5 Score=32.71 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+.|+++| |.|.||||++.-+++.+.
T Consensus 45 ~~~~ll~G----~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSG----TRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEEC----STTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHhc
Confidence 45889988 579999999999988874
No 217
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=51.63 E-value=5.6 Score=44.14 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=23.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 101 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~l 101 (507)
-|-|+|+| |-.|.||||+|.||+++|. +.
T Consensus 34 ~~~l~I~g---t~s~vGKT~vt~gL~r~l~-~~ 62 (831)
T 4a0g_A 34 HPTYLIWS---ANTSLGKTLVSTGIAASFL-LQ 62 (831)
T ss_dssp SCEEEEEE---SSSSSCHHHHHHHHHHHHH-SC
T ss_pred cccEEEEE---CCCCCCHHHHHHHHHHHHH-hc
Confidence 35577776 5579999999999999994 66
No 218
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=51.61 E-value=13 Score=37.14 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=29.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
+.|++|+|+| |-|.||||+.--|..-+. .-+...+..+-+|
T Consensus 134 ~~g~~i~ivG----~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 134 RKMGLILVTG----PTGSGKSTTIASMIDYIN-QTKSYHIITIEDP 174 (372)
T ss_dssp SSSEEEEEEC----SSSSSHHHHHHHHHHHHH-HHSCCEEEEEESS
T ss_pred cCCCEEEEEC----CCCCCHHHHHHHHHhhcC-cCCCcEEEEeccc
Confidence 5688999998 349999999998888773 4334455555554
No 219
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=51.58 E-value=47 Score=30.98 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEccccc
Q 010562 463 DSKAELNAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 463 DT~~Ei~~v~~~~~~~g~~~~~~~~~wa 490 (507)
+++++++.|.++|++.|+. +++-+.|+
T Consensus 190 ~~~~~l~~i~~~~~~~~~~-li~De~~~ 216 (375)
T 2eh6_A 190 ASEDFLSKLQEICKEKDVL-LIIDEVQT 216 (375)
T ss_dssp CCHHHHHHHHHHHHHHTCE-EEEECTTT
T ss_pred CCHHHHHHHHHHHHHhCCE-EEEecccc
Confidence 7899999999999999996 77777777
No 220
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=51.39 E-value=7.7 Score=35.69 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=21.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+..+-||++| |.|.||||++..+++.+
T Consensus 62 ~~~~~vLl~G----~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEG----PPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHh
Confidence 3455677776 66999999998888776
No 221
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=51.25 E-value=11 Score=40.24 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=27.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcC-CcE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD-KKV 105 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lG-k~a 105 (507)
.+|.+|++||+ .|.||||++.-|++.|+ ..| ..+
T Consensus 394 q~~~~I~l~Gl----sGSGKSTiA~~La~~L~-~~G~~~~ 428 (573)
T 1m8p_A 394 TQGFTIFLTGY----MNSGKDAIARALQVTLN-QQGGRSV 428 (573)
T ss_dssp TCCEEEEEECS----TTSSHHHHHHHHHHHHH-HHCSSCE
T ss_pred ccceEEEeecC----CCCCHHHHHHHHHHHhc-ccCCceE
Confidence 35789999997 59999999999999995 556 443
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=51.12 E-value=25 Score=33.76 Aligned_cols=48 Identities=15% Similarity=0.062 Sum_probs=34.2
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHH---HHHHHHHHHHcCCCeEEEc
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAE---LNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~E---i~~v~~~~~~~g~~~~~~~ 486 (507)
++.+.+..++..++|+|+++|+-.-.++++ ++.+.+++++.|.. +...
T Consensus 98 ~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~-~~~~ 148 (302)
T 2yv5_A 98 LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYD-VLKV 148 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCE-EEEC
T ss_pred HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCe-EEEE
Confidence 455666666779999999999976555542 66677778888885 4433
No 223
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=50.96 E-value=9 Score=35.03 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=21.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.+|-+|| |-|.||||++--|+.-|
T Consensus 23 ~~g~iigI~G----~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSG----GTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4688888887 67999999998776655
No 224
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=50.80 E-value=9.2 Score=33.27 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=24.1
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
+-|+++| |.|.||||++..++..+. .-|.+
T Consensus 55 ~~~~l~G----~~GtGKT~la~~i~~~~~-~~~~~ 84 (202)
T 2w58_A 55 KGLYLHG----SFGVGKTYLLAAIANELA-KRNVS 84 (202)
T ss_dssp CEEEEEC----STTSSHHHHHHHHHHHHH-TTTCC
T ss_pred CeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCe
Confidence 6788887 679999999999999884 44544
No 225
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=50.69 E-value=14 Score=37.12 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=47.5
Q ss_pred HHHHHHHcCCCCcchhcccCc-----eeeecc--hhhhhcc---CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhh
Q 010562 31 ISEIAQELNLKPNHYDLYGKY-----KAKVLL--SVLDELE---GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (507)
Q Consensus 31 I~~iA~~lGi~~~~le~YG~~-----kAKi~l--~~l~~~~---~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~ 100 (507)
|.+|-+++|-.. +.+.+.. ...|+. ..||++- .-+.|.+++|.+ |.|.||||++.-++..+ ..
T Consensus 15 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~G----ppGsGKSTLal~la~~~-~~ 87 (356)
T 3hr8_A 15 LKRIEENFGKGS--IMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFG----QESSGKTTLALHAIAEA-QK 87 (356)
T ss_dssp HHHHHHHHCTTS--SCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEE----STTSSHHHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCCC--ceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEEC----CCCCCHHHHHHHHHHHH-Hh
Confidence 667777777542 2222221 123333 3455532 236799999998 68999999999998887 35
Q ss_pred cCCcEEEEecCCCCC
Q 010562 101 LDKKVVTCLRQPSQG 115 (507)
Q Consensus 101 lGk~a~~~lRePSlG 115 (507)
.|.+++..=-|.+.-
T Consensus 88 ~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 88 MGGVAAFIDAEHALD 102 (356)
T ss_dssp TTCCEEEEESSCCCC
T ss_pred cCCeEEEEecccccc
Confidence 566654433344433
No 226
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=50.65 E-value=12 Score=41.48 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=25.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
+.+.+|+| |.|.|||||...+...|-..-+++..+
T Consensus 371 ~~~~lI~G----ppGTGKT~ti~~~i~~l~~~~~~~ilv 405 (800)
T 2wjy_A 371 RPLSLIQG----PPGTGKTVTSATIVYHLARQGNGPVLV 405 (800)
T ss_dssp SSEEEEEC----CTTSCHHHHHHHHHHHHHTTCSSCEEE
T ss_pred CCeEEEEc----CCCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 46888888 889999999999998884223444433
No 227
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=50.60 E-value=32 Score=35.35 Aligned_cols=54 Identities=22% Similarity=0.264 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccC
Q 010562 439 LARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 439 L~kHIeni~~fGvpvV-VAIN---~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG 493 (507)
.++.|+.|++.|+++| +.++ .|..+.-+.++.+.++|.+.|.. +++.-|...|.
T Consensus 41 ~~~di~~ik~~G~N~VRipv~~g~~~~~~~l~~ld~vv~~a~~~Gl~-VIlDlH~~~g~ 98 (464)
T 1wky_A 41 ATTAIEGIANTGANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNLV-AVLEVHDATGY 98 (464)
T ss_dssp HHHHHHHHHTTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEECTTTTC
T ss_pred hHHHHHHHHHCCCCEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEecCCCCC
Confidence 3567888999999998 6676 57788889999999999999996 88877776654
No 228
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=50.52 E-value=14 Score=30.28 Aligned_cols=39 Identities=10% Similarity=0.022 Sum_probs=25.1
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 448 ~fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
..++|++|++|+..-..+.+ .+...+++++.++. ++.++
T Consensus 117 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 157 (179)
T 2y8e_A 117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETS 157 (179)
T ss_dssp TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEEB
T ss_pred CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEEe
Confidence 45899999999975432222 34456777778875 44443
No 229
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=50.26 E-value=21 Score=29.58 Aligned_cols=51 Identities=10% Similarity=0.090 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhh-cCCcEEEEecCCCCC-CHHHHHHHHHHHHHcCCCeEEEccc
Q 010562 437 VNLARHIANTKA-YGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 437 ~NL~kHIeni~~-fGvpvVVAIN~F~tD-T~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
.++...++.+++ .++|+|+++|+...+ .+...+.+++++++.++. ++.++.
T Consensus 133 ~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 185 (208)
T 3clv_A 133 DRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL-FIQTSA 185 (208)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCE-EEEECT
T ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCc-EEEEec
Confidence 344555555554 569999999997621 122346677888888885 554443
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=50.25 E-value=14 Score=36.53 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=29.0
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
.+.|.+|.+.|- -|.|||||.-=|+--+. .-|.+..+.
T Consensus 126 ~~~g~vi~lvG~----nGaGKTTll~~Lag~l~-~~~g~V~l~ 163 (328)
T 3e70_C 126 AEKPYVIMFVGF----NGSGKTTTIAKLANWLK-NHGFSVVIA 163 (328)
T ss_dssp SCSSEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCCeEEEEECC----CCCCHHHHHHHHHHHHH-hcCCEEEEE
Confidence 356899999884 69999999999988773 556655443
No 231
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=49.91 E-value=13 Score=37.21 Aligned_cols=32 Identities=31% Similarity=0.269 Sum_probs=27.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.|.|-|||.+ |||||+-=|++.| ...|.++.
T Consensus 48 ~~~vI~VTGTn------GKtTT~~~l~~iL-~~~G~~~g 79 (422)
T 1w78_A 48 APFVFTVAGTN------GKGTTCRTLESIL-MAAGYKVG 79 (422)
T ss_dssp SSEEEEEECSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCcEEEEeCCc------ChHHHHHHHHHHH-HHCCCCEE
Confidence 46899999986 9999999999999 57898864
No 232
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=49.80 E-value=75 Score=28.42 Aligned_cols=62 Identities=21% Similarity=0.169 Sum_probs=44.4
Q ss_pred ccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEec-CCCC---CCHH-------HHHHHHHHHHHcCCCeEEEccc
Q 010562 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVN-MFAT---DSKA-------ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 426 ~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN-~F~t---DT~~-------Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
.++.+.-++.+..+++.|+..+.+|.+.||..- .++. ++++ -+..+.+.|++.|+. .++-++
T Consensus 72 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~ 144 (275)
T 3qc0_A 72 APDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVP-LAIEPL 144 (275)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeEC
Confidence 345567778899999999999999999998753 3442 3332 245556667788997 677654
No 233
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=49.75 E-value=17 Score=34.75 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=48.6
Q ss_pred cceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 010562 393 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 472 (507)
Q Consensus 393 PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~ 472 (507)
-|.+-+|.-+.+||-. - +++-.+++.++.+-| ...++||++..-.. |++|+....
T Consensus 80 AdEID~Vinig~~~~g--~----------~~~v~~ei~~v~~a~----------~~~~lKvIlEt~~L---t~eei~~a~ 134 (226)
T 1vcv_A 80 ADEIDVVAPIGLVKSR--R----------WAEVRRDLISVVGAA----------GGRVVKVITEEPYL---RDEERYTLY 134 (226)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHT----------TTSEEEEECCGGGC---CHHHHHHHH
T ss_pred CCEEEEecchhhhcCC--C----------HHHHHHHHHHHHHHH----------cCCCceEEEeccCC---CHHHHHHHH
Confidence 5778888888888732 1 222233344433333 23567777755544 489999999
Q ss_pred HHHHHcCCCeEEEccccc
Q 010562 473 NAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 473 ~~~~~~g~~~~~~~~~wa 490 (507)
+.|.++|+..+-.|+.|.
T Consensus 135 ~ia~eaGADfVKTSTGf~ 152 (226)
T 1vcv_A 135 DIIAEAGAHFIKSSTGFA 152 (226)
T ss_dssp HHHHHHTCSEEECCCSCC
T ss_pred HHHHHcCCCEEEeCCCCC
Confidence 999999998666677898
No 234
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=49.59 E-value=8.7 Score=35.49 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=21.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|+++.++| |-|.||||+.--|..-+
T Consensus 14 ~~G~ii~l~G----psGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSA----PSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEEC----CTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHhccC
Confidence 6799999998 78999999877765544
No 235
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=49.49 E-value=14 Score=36.57 Aligned_cols=104 Identities=21% Similarity=0.233 Sum_probs=68.1
Q ss_pred CeEEeecccccccccccccccccccCCCCcceEE---EEeeehHHHhcCCCCCccCCCCCcccccc------cCHHHH-H
Q 010562 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV---IVATIRALKMHGGGPQVVAGKPLDHAYLN------ENVALV-E 433 (507)
Q Consensus 364 dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavV---lVaTvRALK~HGG~~~~~~g~pL~~~l~~------enl~al-~ 433 (507)
||+||-.-|..|. +++|++ +||..|+.--.+. -+.+.+.+++.-.. .|-.+|+++.+ .|.+++ +
T Consensus 175 df~iTQ~ffD~~~-~~~f~~-~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~----~Gv~iP~~l~~~l~~~~~d~~~~~~ 248 (310)
T 3apt_A 175 DFAITQLFFNNAH-YFGFLE-RARRAGIGIPILPGIMPVTSYRQLRRFTEV----CGASIPGPLLAKLERHQDDPKAVLE 248 (310)
T ss_dssp SEEEECCCSCHHH-HHHHHH-HHHHTTCCSCEECEECCCCCTTHHHHHHHT----SCCCCCHHHHHHHHHSTTCHHHHHH
T ss_pred CEEEecccCCHHH-HHHHHH-HHHHcCCCCeEEEEecccCCHHHHHHHHHc----CCCCCCHHHHHHHHhccCCHHHHHH
Confidence 8999999999886 788888 8999998521111 14567777655322 34445654322 244444 5
Q ss_pred HHHhhHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 434 AGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 434 ~G~~NL~kHIeni~~fGvpvV--VAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
.|.+-....++.+...|+|=| -.+|+. +.+.++++..|..
T Consensus 249 ~gi~~a~e~~~~L~~~gv~GiH~yt~n~~--------~~~~~I~~~l~~~ 290 (310)
T 3apt_A 249 IGVEHAVRQVAELLEAGVEGVHFYTLNKS--------PATRMVLERLGLR 290 (310)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECCSSC--------CHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEeCCCCH--------HHHHHHHHHcCCC
Confidence 688877788999998899833 334544 3566667777763
No 236
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=49.49 E-value=9.1 Score=37.11 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=26.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
.++|-||+.+ ||||||-=|++.| ...|+++.
T Consensus 108 ~~~IaVTGTn------GKTTTt~ll~~iL-~~~g~~~~ 138 (326)
T 3eag_A 108 HWVLGVAGTH------GKTTTASMLAWVL-EYAGLAPG 138 (326)
T ss_dssp SEEEEEESSS------CHHHHHHHHHHHH-HHTTCCCE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HHcCCCce
Confidence 5789999986 9999999999999 58898753
No 237
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=49.43 E-value=8.1 Score=36.71 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
|+.|.++|. .|.||||++.-|++.|+
T Consensus 48 g~~i~l~G~----~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGM----MGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECS----TTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 888999996 59999999988888773
No 238
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=49.35 E-value=6.1 Score=33.46 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=20.2
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..|++||. .|.||||++--|++.|+
T Consensus 8 ~~i~l~G~----~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGF----MGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESC----TTSSHHHHHHHHHHHHT
T ss_pred ceEEEECC----CCCCHHHHHHHHHHHhC
Confidence 36888885 69999999988887773
No 239
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=49.34 E-value=11 Score=38.17 Aligned_cols=40 Identities=25% Similarity=0.203 Sum_probs=31.0
Q ss_pred hhhccC-CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 60 LDELEG-SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 60 l~~~~~-~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
++++.. +++-|+|-|||.| |||||+-=|.+.| ...|.++-
T Consensus 42 l~~lg~p~~~~~vI~VtGTN------GKgSt~~~l~~iL-~~~G~~vg 82 (437)
T 3nrs_A 42 AERLDLLKPAPKIFTVAGTN------GKGTTCCTLEAIL-LAAGLRVG 82 (437)
T ss_dssp HHHTTCSCSSSEEEEEECSS------SHHHHHHHHHHHH-HHTTCCEE
T ss_pred HHHcCCccccCCEEEEECCc------ChHHHHHHHHHHH-HHCCCcEE
Confidence 344432 3457899999987 9999999999999 47798863
No 240
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=49.23 E-value=9.5 Score=35.17 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..++.|+++|. -|.||||.+-=|++.+
T Consensus 27 ~~~~~I~l~G~----~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGA----PGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHHh
Confidence 35789999994 6999999998887766
No 241
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=49.00 E-value=23 Score=33.76 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHHhhc--CCcEEEEecCCCCCCHHHH--------HHHHHHHHHcCC--CeEEEcccccccC
Q 010562 440 ARHIANTKAY--GANVVVAVNMFATDSKAEL--------NAVRNAAMAAGA--FDAVVCSHHAHGG 493 (507)
Q Consensus 440 ~kHIeni~~f--GvpvVVAIN~F~tDT~~Ei--------~~v~~~~~~~g~--~~~~~~~~wa~GG 493 (507)
.+.++.++++ ++|+||++|+..-..+++. +.+.++|++.|+ ..+..++.|.+|+
T Consensus 103 ~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~~~i 168 (307)
T 3r7w_A 103 AKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESL 168 (307)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTSSHH
T ss_pred HHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecCChH
Confidence 3345555543 8999999999865553232 566788888884 3477788887443
No 242
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=48.81 E-value=18 Score=30.88 Aligned_cols=51 Identities=12% Similarity=0.095 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEccc
Q 010562 437 VNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 437 ~NL~kHIeni~~---fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~~ 488 (507)
.++.+.++.+++ .++|++|++|+..-..+.+ .+.+++++++.++. +..++.
T Consensus 110 ~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa 165 (191)
T 2a5j_A 110 NHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETSA 165 (191)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEECT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEeC
Confidence 344444555544 4899999999976532211 34456778888885 544443
No 243
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=48.79 E-value=32 Score=40.81 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=50.1
Q ss_pred ccccccccccccCCCC-cceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCc-EE
Q 010562 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (507)
Q Consensus 377 GaEKF~dIKCR~sgl~-PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvp-vV 454 (507)
|-|+|. +-+..++. .|++|+|.-+.- |. +.....|+..++..|+| +|
T Consensus 368 GHedF~--~~mi~gas~AD~aILVVDAtd-----Gv------------------------~~QTrEhL~ll~~lgIP~II 416 (1289)
T 3avx_A 368 GHADYV--KNMITGAAQMDGAILVVAATD-----GP------------------------MPQTREHILLGRQVGVPYII 416 (1289)
T ss_dssp CHHHHH--HHHHHTSCCCSEEEEEEETTT-----CS------------------------CTTHHHHHHHHHHHTCSCEE
T ss_pred ChHHHH--HHHHHHHhhCCEEEEEEcCCc-----cC------------------------cHHHHHHHHHHHHcCCCeEE
Confidence 445564 34444554 899999986541 11 01345677777888999 79
Q ss_pred EEecCCCCCCHHH-H----HHHHHHHHHcCC----CeEEEccccc
Q 010562 455 VAVNMFATDSKAE-L----NAVRNAAMAAGA----FDAVVCSHHA 490 (507)
Q Consensus 455 VAIN~F~tDT~~E-i----~~v~~~~~~~g~----~~~~~~~~wa 490 (507)
|++|+-.-..++| + +.+++++++.|. ..++.++.+.
T Consensus 417 VVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAkt 461 (1289)
T 3avx_A 417 VFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALK 461 (1289)
T ss_dssp EEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTT
T ss_pred EEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEecc
Confidence 9999976543222 2 345667777773 1255555543
No 244
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=48.78 E-value=12 Score=30.31 Aligned_cols=51 Identities=8% Similarity=0.035 Sum_probs=30.8
Q ss_pred HhhHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcc
Q 010562 436 CVNLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 436 ~~NL~kHIeni~~---fGvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
+.++.+.++.+.+ -++|+|++.|+-.-..+ .+.+.+++++++.++. +..++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 149 (170)
T 1r2q_A 94 FARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETS 149 (170)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECC
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEEe
Confidence 3344455555544 38999999999754222 1235567788888875 44443
No 245
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=48.78 E-value=47 Score=30.37 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=45.2
Q ss_pred ccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-c-----CCC--CCCHHH-------HHHHHHHHHHcCCCeEEEccc
Q 010562 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-N-----MFA--TDSKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 424 l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAI-N-----~F~--tDT~~E-------i~~v~~~~~~~g~~~~~~~~~ 488 (507)
+..+|.+.-++.+..+++.|+..+.+|.+.|+.+ . .|+ .+.++. +..+.+.|++.|+. ..+-++
T Consensus 75 l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~ 153 (294)
T 3vni_A 75 LSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVD-FCLEVL 153 (294)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 3456777788899999999999999999999852 2 233 222322 34455667788996 777666
No 246
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=48.44 E-value=8.4 Score=36.58 Aligned_cols=48 Identities=31% Similarity=0.553 Sum_probs=31.3
Q ss_pred cccCceeeecchhhh-hcc-CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 47 LYGKYKAKVLLSVLD-ELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 47 ~YG~~kAKi~l~~l~-~~~-~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+|...++-.+..+. .+. .+..|+-||++| |.|.||||++..+++.++
T Consensus 46 ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~G----ppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 46 MVGQLAARRAAGVVLEMIREGKIAGRAVLIAG----QPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp EESCHHHHHHHHHHHHHHHTTCCTTCEEEEEE----STTSSHHHHHHHHHHHHC
T ss_pred ccChHHHHHHHHHHHHHHHcCCCCCCEEEEEC----CCCCCHHHHHHHHHHHhc
Confidence 345555544333222 222 223467899998 579999999999999884
No 247
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=48.29 E-value=8.9 Score=40.57 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=26.2
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
|-||.| |.|.|||||.+-+...|- +-|++..+|
T Consensus 207 ~~lI~G----PPGTGKT~ti~~~I~~l~-~~~~~ILv~ 239 (646)
T 4b3f_X 207 LAIIHG----PPGTGKTTTVVEIILQAV-KQGLKVLCC 239 (646)
T ss_dssp EEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred ceEEEC----CCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 778877 799999999999888883 667765554
No 248
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=48.06 E-value=28 Score=31.39 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=38.8
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEecCCCC--C-CH-------HHHHHHHHHHHHcCCCeEEEccc
Q 010562 431 LVEAGCVNLARHIANTKAYGANVVVAVNMFAT--D-SK-------AELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 431 al~~G~~NL~kHIeni~~fGvpvVVAIN~F~t--D-T~-------~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
..++.+..+++.|+..+.+|.+.|+. ..++. + .+ +.+..+.+.|++.|+. ..+-++
T Consensus 78 ~~~~~~~~~~~~i~~A~~lG~~~v~~-~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~ 143 (281)
T 3u0h_A 78 VFLRELSLLPDRARLCARLGARSVTA-FLWPSMDEEPVRYISQLARRIRQVAVELLPLGMR-VGLEYV 143 (281)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCEEEE-ECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEE-eecCCCCCcchhhHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 46778899999999999999999984 23332 1 12 2344445556788996 666665
No 249
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=47.76 E-value=39 Score=28.09 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=26.8
Q ss_pred hhcCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcc
Q 010562 447 KAYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 447 ~~fGvpvVVAIN~F~tDT--~~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
...++|+||++|+..-.. +...+.+.++|++.++. +..++
T Consensus 120 ~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S 161 (183)
T 3kkq_A 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETS 161 (183)
T ss_dssp TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEB
T ss_pred CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEec
Confidence 347999999999976322 22234467788888886 54444
No 250
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=47.71 E-value=50 Score=29.57 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=42.6
Q ss_pred CHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCC---CCHHH-------HHHHHHHHHHcCCCeEEEcccccc
Q 010562 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSHHAH 491 (507)
Q Consensus 428 nl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~t---DT~~E-------i~~v~~~~~~~g~~~~~~~~~wa~ 491 (507)
+-+..++....+++.|+.++.+|.+.||..--+.. +.++. +..+.+.|++.|+. +++-+++..
T Consensus 75 ~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~~ 147 (278)
T 1i60_A 75 DEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVK-IALEFVGHP 147 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECCCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEecCCc
Confidence 44556778899999999999999999988422221 22332 33445556677996 777777544
No 251
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=47.66 E-value=22 Score=37.39 Aligned_cols=41 Identities=5% Similarity=0.131 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 441 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 441 kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
++.+.++.+++|+++++|+-.-......+.+.++.+..|..
T Consensus 125 ~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~ 165 (528)
T 3tr5_A 125 KLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIH 165 (528)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCC
Confidence 45566788999999999997655444445566666677764
No 252
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=47.42 E-value=30 Score=28.53 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=30.6
Q ss_pred hHHHHHHHHh---hcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccc
Q 010562 438 NLARHIANTK---AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 438 NL~kHIeni~---~fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
++.+.++.++ ..++|+++++|+..-..+. ..+.+.+++++.|+. +..++.
T Consensus 101 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 155 (180)
T 2g6b_A 101 NIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETSA 155 (180)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECCT
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEeC
Confidence 3444444443 3689999999997654322 233456777888886 555443
No 253
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=47.33 E-value=17 Score=33.75 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.++++.| |-|.||||++.-++..+
T Consensus 28 ~~G~i~~i~G----~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVS----PGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 4689999998 67999999998888766
No 254
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=47.21 E-value=17 Score=29.29 Aligned_cols=38 Identities=16% Similarity=0.045 Sum_probs=25.3
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcc
Q 010562 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
.++|++|++|+..-..+ ...+.+++++++.++. +..++
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 147 (168)
T 1u8z_A 108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETS 147 (168)
T ss_dssp TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECC
T ss_pred CCCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC
Confidence 48999999999754322 2244567778888875 54444
No 255
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=47.13 E-value=9 Score=33.39 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=16.4
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHH
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~q 95 (507)
.|.+||. -|.||||++--|++
T Consensus 3 ~i~i~G~----~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGN----IGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEEC----TTSSHHHHHHHHHH
T ss_pred EEEEECC----CCcCHHHHHHHHHH
Confidence 5777774 69999998877765
No 256
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=46.98 E-value=8 Score=33.37 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=19.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|++|+++| |-|.||||+.--|++.+
T Consensus 2 g~ii~l~G----~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITG----PAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEEC----STTSSHHHHHHHHHHHS
T ss_pred CeEEEEEC----CCCCcHHHHHHHHhccc
Confidence 56777777 46999999988886533
No 257
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=46.97 E-value=25 Score=34.33 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=23.6
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEecCCC
Q 010562 432 VEAGCVNLARHIANTKAYGANVVVAVNMFA 461 (507)
Q Consensus 432 l~~G~~NL~kHIeni~~fGvpvVVAIN~F~ 461 (507)
.++.++++++.|++++++|+++|+. |-++
T Consensus 90 r~~~i~~~~~~i~~a~~lG~~~v~~-n~~p 118 (367)
T 1tz9_A 90 RDHYIDNYRQTLRNLGKCGISLVCY-SFKP 118 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEE-CCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE-eCCC
Confidence 3567889999999999999998765 5443
No 258
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=46.95 E-value=14 Score=40.77 Aligned_cols=36 Identities=22% Similarity=0.510 Sum_probs=26.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~ 108 (507)
+.+.+|.| |.|.|||||...+...|-..-+++..+|
T Consensus 375 ~~~~lI~G----ppGTGKT~~i~~~i~~l~~~~~~~ILv~ 410 (802)
T 2xzl_A 375 RPLSLIQG----PPGTGKTVTSATIVYHLSKIHKDRILVC 410 (802)
T ss_dssp CSEEEEEC----STTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEC----CCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 56888988 8999999999998877732235554443
No 259
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=46.78 E-value=65 Score=29.56 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=44.1
Q ss_pred ccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecC---CCCCCHHH-------HHHHHHHHHHcCCCeEEEcccc
Q 010562 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNM---FATDSKAE-------LNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 426 ~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~---F~tDT~~E-------i~~v~~~~~~~g~~~~~~~~~w 489 (507)
.++.+..++.+..+++.|+..+.+|.+.||.--. +..++++. +..+.+.|++.|+. +++-+++
T Consensus 97 ~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~ 169 (295)
T 3cqj_A 97 SEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVT-LAMEIMD 169 (295)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCE-EEEECCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeeCC
Confidence 3455677888899999999999999999885311 12234433 44555667788996 7777765
No 260
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=46.67 E-value=12 Score=32.28 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=28.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
.|+.+++.| |-|.||||+...++..+. .-|++ ++.+...
T Consensus 35 ~g~~~~l~G----~~G~GKTtL~~~i~~~~~-~~g~~-~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWG----EEGAGKSHLLQAWVAQAL-EAGKN-AAYIDAA 73 (149)
T ss_dssp CCSEEEEES----SSTTTTCHHHHHHHHHHH-TTTCC-EEEEETT
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHHHHH-hcCCc-EEEEcHH
Confidence 588888876 679999999999998884 44554 3344433
No 261
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=46.66 E-value=33 Score=28.91 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=17.3
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHH
Q 010562 449 YGANVVVAVNMFATDSKAELNAVRNA 474 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~Ei~~v~~~ 474 (507)
.++|++|++|+..-..+.+++.+.+.
T Consensus 155 ~~~p~ilv~nK~Dl~~~~~~~~~~~~ 180 (193)
T 2ged_A 155 NGIDILIACNKSELFTARPPSKIKDA 180 (193)
T ss_dssp TCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred cCCCEEEEEEchHhcCCCCHHHHHHH
Confidence 58999999999765444444444433
No 262
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=46.55 E-value=61 Score=28.96 Aligned_cols=83 Identities=16% Similarity=0.097 Sum_probs=47.4
Q ss_pred CCCCeEEeecccc-cccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhH
Q 010562 361 GPGGFVVTEAGFG-ADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNL 439 (507)
Q Consensus 361 g~~dyVVTEAGFG-aDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL 439 (507)
...||||-..+-+ .+......+. ..|.+|+|++-.. ..+. .+
T Consensus 66 ~~yD~viiD~p~~~~~~~~~~~l~--------~aD~viiv~~~~~----------------------~~~~-------~~ 108 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDEDLEALAD--------GCDLLVIPSTPDA----------------------LALD-------AL 108 (209)
T ss_dssp GGCSEEEEEEECCCSSSHHHHHHH--------TSSEEEEEECSSH----------------------HHHH-------HH
T ss_pred hcCCEEEEeCCCCcCcHHHHHHHH--------HCCEEEEEecCCc----------------------hhHH-------HH
Confidence 3459999887766 4433333321 3577888874221 1122 23
Q ss_pred HHHHHHHhhc-CCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCC
Q 010562 440 ARHIANTKAY-GANVVVAVNMFATDS-KAELNAVRNAAMAAGAF 481 (507)
Q Consensus 440 ~kHIeni~~f-GvpvVVAIN~F~tDT-~~Ei~~v~~~~~~~g~~ 481 (507)
.+-++.++++ +.++.|.+|++...+ ..+ +.+.+.+++.|..
T Consensus 109 ~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~-~~~~~~l~~~g~~ 151 (209)
T 3cwq_A 109 MLTIETLQKLGNNRFRILLTIIPPYPSKDG-DEARQLLTTAGLP 151 (209)
T ss_dssp HHHHHHHHHTCSSSEEEEECSBCCTTSCHH-HHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCCCEEEEEEecCCccchHH-HHHHHHHHHcCCc
Confidence 3333444442 788999999998876 332 3345556666754
No 263
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=46.40 E-value=23 Score=29.50 Aligned_cols=40 Identities=10% Similarity=-0.062 Sum_probs=24.1
Q ss_pred hhcCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcc
Q 010562 447 KAYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 447 ~~fGvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
...++|+||++|+..-..+ -..+.+.+++++.++. +..++
T Consensus 108 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 149 (181)
T 3t5g_A 108 GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESS 149 (181)
T ss_dssp ----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECC
T ss_pred CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEEe
Confidence 3458999999999764222 2234566788888885 44443
No 264
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=46.25 E-value=11 Score=32.72 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+.|.+++++| |.|.||||++.-|+-
T Consensus 18 ~~G~~~~i~G----~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYG----PYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEEC----STTSSHHHHHHHHHH
T ss_pred cCCEEEEEEC----CCCCCHHHHHHHHHH
Confidence 6799999998 679999999887765
No 265
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=46.04 E-value=54 Score=27.36 Aligned_cols=115 Identities=10% Similarity=0.090 Sum_probs=60.3
Q ss_pred chHHHHHHHHHhcCCCCeEEeeccccccc---ccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccc
Q 010562 348 SSIVADKIALKLVGPGGFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAY 424 (507)
Q Consensus 348 nSviAtk~ALkLag~~dyVVTEAGFGaDl---GaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l 424 (507)
.+.++.++.-+-. ++.|.-.|++-+- +.+++-.. ....+||.|||-.-.--+.
T Consensus 25 ~~~l~~~l~~~~~---~~~v~n~g~~G~~~~~~~~~~~~~---~~~~~pd~vvi~~G~ND~~------------------ 80 (185)
T 3hp4_A 25 VKLLQDKYDAEQS---DIVLINASISGETSGGALRRLDAL---LEQYEPTHVLIELGANDGL------------------ 80 (185)
T ss_dssp HHHHHHHHHHTTC---CEEEEECCCTTCCHHHHHHHHHHH---HHHHCCSEEEEECCHHHHH------------------
T ss_pred HHHHHHHHHhcCC---cEEEEECCcCCccHHHHHHHHHHH---HhhcCCCEEEEEeecccCC------------------
Confidence 4555555544422 6777777775542 22233221 1124899888765222211
Q ss_pred cccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCC----CCCHHH-HHHHHHHHHHcCCCeEEEccccccc
Q 010562 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA----TDSKAE-LNAVRNAAMAAGAFDAVVCSHHAHG 492 (507)
Q Consensus 425 ~~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~----tDT~~E-i~~v~~~~~~~g~~~~~~~~~wa~G 492 (507)
...+.+..+ .||++-|+.+++.+.++|++--..+ .+..++ -+.++++|++.|+. ++ +.|..+
T Consensus 81 ~~~~~~~~~---~~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~-~v--d~~~~~ 147 (185)
T 3hp4_A 81 RGFPVKKMQ---TNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAH-LM--NFFMLD 147 (185)
T ss_dssp TTCCHHHHH---HHHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCE-EE--CCTTTT
T ss_pred CCcCHHHHH---HHHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCE-EE--cchhhh
Confidence 112233443 3677778888888877765431122 222223 35668889999885 33 455443
No 266
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=46.02 E-value=13 Score=38.00 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=29.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
..|.+|+|+| |-|.|||||.-.|..-++ .- ...+..+=+|
T Consensus 165 ~~ggii~I~G----pnGSGKTTlL~allg~l~-~~-~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTG----PTGSGKSTTLYAGLQELN-SS-ERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEEC----STTSCHHHHHHHHHHHHC-CT-TSCEEEEESS
T ss_pred hcCCeEEEEC----CCCCCHHHHHHHHHhhcC-CC-CCEEEEeccc
Confidence 5688999998 559999999999888774 33 3345556555
No 267
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=45.98 E-value=76 Score=28.43 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=46.2
Q ss_pred ccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCCCC----HHH-------HHHHHHHHHHcCCCeEEEcccc
Q 010562 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFATDS----KAE-------LNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 424 l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAI-N~F~tDT----~~E-------i~~v~~~~~~~g~~~~~~~~~w 489 (507)
+..+|.+..++.+..++++|+-.+.+|.+.||.- .....+. ++. +..+.+.+++.|+. +++-++.
T Consensus 63 l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~ 139 (254)
T 3ayv_A 63 LLSPDPEVRGLTLRRLLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTLGVR-LLLENSH 139 (254)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCE-EEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCE-EEEcCCC
Confidence 4456778888999999999999999999998764 3333332 221 33455566678996 7777775
No 268
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=45.83 E-value=7.6 Score=31.99 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..++-|+++| |.|.||||++..+++.+.
T Consensus 41 ~~~~~~ll~G----~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIG----EPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEEC----CTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEEC----CCCCCHHHHHHHHHHHHH
Confidence 3456788887 569999999999999984
No 269
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=45.71 E-value=16 Score=31.89 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=20.9
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|+|+| +.|.||||+..-|+..+.
T Consensus 31 ~~i~i~G----~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMG----AIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEE----CTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEc----CCCCCHHHHHHHHHHHhc
Confidence 4677777 789999999999998874
No 270
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=45.37 E-value=9.5 Score=33.68 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
+.|.++++.| |.|.||||+..-|+-.
T Consensus 22 ~~G~~~~i~G----~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFG----EFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEEC----CTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEC----CCCCcHHHHHHHHHHH
Confidence 5699999998 6799999999877654
No 271
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=45.23 E-value=25 Score=30.45 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=33.4
Q ss_pred HhhHHHHHHHHhh----cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 436 CVNLARHIANTKA----YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 436 ~~NL~kHIeni~~----fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
+.++...++.++. .++|+||++|+..-..+.+ .+.+.+++++.++. +..++
T Consensus 123 ~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S 179 (217)
T 2f7s_A 123 FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP-YFETS 179 (217)
T ss_dssp HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEEEB
T ss_pred HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc-EEEEE
Confidence 3455666666654 5799999999975433222 35567788888886 44443
No 272
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=45.20 E-value=9.9 Score=34.50 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=24.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
+.|++|.+.|. -|.||||+.--|+ .++.+ +...+||
T Consensus 18 ~~g~~i~i~G~----~GsGKSTl~~~L~-----~~~g~-v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIEGN----IGSGKTTYLNHFE-----KYKND-ICLLTEP 53 (230)
T ss_dssp CCCEEEEEECS----TTSCHHHHHHTTG-----GGTTT-EEEECCT
T ss_pred CCceEEEEECC----CCCCHHHHHHHHH-----hccCC-eEEEecC
Confidence 56999999996 4999999654442 22322 4555666
No 273
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=45.06 E-value=17 Score=29.66 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=23.5
Q ss_pred hcCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCC
Q 010562 448 AYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAF 481 (507)
Q Consensus 448 ~fGvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~ 481 (507)
..++|+++++|+..-..+ ...+.+.+++++.|+.
T Consensus 109 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 144 (170)
T 1z08_A 109 GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK 144 (170)
T ss_dssp GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE
T ss_pred CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe
Confidence 368999999999654321 1234567788888875
No 274
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=44.98 E-value=86 Score=28.29 Aligned_cols=88 Identities=8% Similarity=0.102 Sum_probs=55.4
Q ss_pred ccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCC-
Q 010562 385 KCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT- 462 (507)
Q Consensus 385 KCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAI-N~F~t- 462 (507)
.++..||++.++.+ |+.-. . .+..+|.+..++.+..+++.|+..+.+|.+.||.- ..+..
T Consensus 55 ~l~~~gl~~~~~~~---------h~~~~-~--------~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~ 116 (287)
T 2x7v_A 55 EMKKHGIDWENAFC---------HSGYL-I--------NLASPKDDIWQKSVELLKKEVEICRKLGIRYLNIHPGSHLGT 116 (287)
T ss_dssp HHHHHTCCGGGEEE---------ECCTT-C--------CTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCEECTTS
T ss_pred HHHHcCCCcceeEE---------ecccc-c--------ccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence 46778888755433 33211 1 22345667778889999999999999999998762 33333
Q ss_pred CCHHHH----HHHHHHHHH-cCCCeEEEcccccc
Q 010562 463 DSKAEL----NAVRNAAMA-AGAFDAVVCSHHAH 491 (507)
Q Consensus 463 DT~~Ei----~~v~~~~~~-~g~~~~~~~~~wa~ 491 (507)
++++.+ +.++++|++ .|+. .++-+++..
T Consensus 117 ~~~~~~~~~~~~l~~l~~~~~gv~-l~lEn~~~~ 149 (287)
T 2x7v_A 117 GEEEGIDRIVRGLNEVLNNTEGVV-ILLENVSQK 149 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSCE-EEEECCCCC
T ss_pred CHHHHHHHHHHHHHHHHcccCCCE-EEEeCCCCC
Confidence 334333 445555544 5775 777777543
No 275
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=44.96 E-value=30 Score=28.11 Aligned_cols=39 Identities=21% Similarity=0.043 Sum_probs=25.2
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 448 ~fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
.-.+|++++.|+..-..+.+ .+...+++++.+.. +..++
T Consensus 109 ~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S 149 (170)
T 1z0j_A 109 PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETS 149 (170)
T ss_dssp CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECB
T ss_pred CCCCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEe
Confidence 45789999999976533222 34466778888875 44444
No 276
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=44.94 E-value=8.3 Score=38.60 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.++|+|+|. .|.||||++.-|++.++
T Consensus 5 ~~~i~i~Gp----tGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGP----TAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECC----TTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 368888884 59999999999988773
No 277
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=44.76 E-value=17 Score=36.55 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.|.+|.+.| |-|.|||||.-=|+--+. .-+.+..
T Consensus 155 ~~g~vi~lvG----~nGsGKTTll~~Lag~l~-~~~G~V~ 189 (359)
T 2og2_A 155 RKPAVIMIVG----VNGGGKTTSLGKLAHRLK-NEGTKVL 189 (359)
T ss_dssp SSSEEEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCeEEEEEc----CCCChHHHHHHHHHhhcc-ccCCEEE
Confidence 4588999998 679999999988887773 4455544
No 278
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=44.54 E-value=8.1 Score=33.39 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=18.8
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+|.+|+ |.|.||||++--|++.|
T Consensus 4 ~i~i~G----~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDG----PSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEEC----STTSSHHHHHHHHHHHH
T ss_pred EEEEEC----CCCCCHHHHHHHHHHhc
Confidence 677777 46999999998887766
No 279
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=44.40 E-value=26 Score=29.98 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=29.7
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCCH-HHHHHHHHHHHHcCCCeEEEccc
Q 010562 438 NLARHIANTKA---YGANVVVAVNMFATDSK-AELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 438 NL~kHIeni~~---fGvpvVVAIN~F~tDT~-~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
++.+.++.+++ .++|++|++|+..-... ...+.+.+++++.|+. +..++.
T Consensus 110 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa 163 (213)
T 3cph_A 110 NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESSA 163 (213)
T ss_dssp THHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECBT
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEeC
Confidence 44444444444 48999999999764211 1223456677778886 554443
No 280
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=44.38 E-value=10 Score=35.98 Aligned_cols=48 Identities=8% Similarity=-0.022 Sum_probs=31.2
Q ss_pred cccCceeeecc-hhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 47 LYGKYKAKVLL-SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 47 ~YG~~kAKi~l-~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+|+.+..-.+ +.+.+......++.|+++| |.|.||||++.-+++.+.
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G----~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLG----LTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 45665443333 2333322234467899998 579999999999998884
No 281
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=44.30 E-value=15 Score=31.42 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=30.2
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcc
Q 010562 438 NLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 438 NL~kHIeni~~---fGvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
++.+.++.+++ .++|+++++|+..-..+ ...+.+++++++.|+. +..++
T Consensus 113 ~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S 166 (192)
T 2fg5_A 113 TLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETS 166 (192)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECB
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe
Confidence 44444444444 48999999999754321 1234567788888875 44443
No 282
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=44.24 E-value=12 Score=33.02 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=28.1
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcc
Q 010562 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 438 NL~kHIeni~~---fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
++.+.++.++. .++|+||++|+..-..+. ..+.+.+++++.++. +..++
T Consensus 103 ~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S 156 (223)
T 3cpj_B 103 NCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETS 156 (223)
T ss_dssp HHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECC
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe
Confidence 34444444444 489999999997543211 123456778888875 54444
No 283
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=44.23 E-value=42 Score=30.72 Aligned_cols=58 Identities=7% Similarity=0.011 Sum_probs=41.1
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCCCCHHH-------HHHHHHHHHHcCCCeEEEcccc
Q 010562 431 LVEAGCVNLARHIANTKAYGANVVVAV-NMFATDSKAE-------LNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 431 al~~G~~NL~kHIeni~~fGvpvVVAI-N~F~tDT~~E-------i~~v~~~~~~~g~~~~~~~~~w 489 (507)
.-++.+..+++.|+..+.+|.+.||.. ...+.++++. +..+.+.|++.|+. +.+-+++
T Consensus 96 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~ 161 (290)
T 3tva_A 96 TRASRVAEMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQA-VHLETGQ 161 (290)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCE-EEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCE-EEEecCC
Confidence 345678899999999999999999974 3344443333 44455666778996 7777764
No 284
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=44.20 E-value=22 Score=31.34 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+.|.++.+.| |-|.||||+..-|+.
T Consensus 28 ~~G~~~~l~G----pnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTG----GTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEEC----CTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEe----CCCCCHHHHHHHHHH
Confidence 5699999988 569999999987763
No 285
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=43.89 E-value=27 Score=32.60 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=23.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..+..|+++| |.|.||||+..-+++.+.
T Consensus 43 ~~~~~vli~G----~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYG----LTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4577899998 569999999999988884
No 286
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=43.70 E-value=13 Score=31.88 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=17.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
.++|.+|+. .|.||||++--|++
T Consensus 8 ~~~I~i~G~----~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGN----IGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEEC----TTSCHHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHHH
Confidence 468888885 69999998765543
No 287
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=43.67 E-value=51 Score=29.74 Aligned_cols=37 Identities=22% Similarity=0.103 Sum_probs=22.2
Q ss_pred HHHHhhcCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 443 IANTKAYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 443 Ieni~~fGvpvV-VAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
++.+++.|++.+ |.+|++...+.. +.+.+.++..|..
T Consensus 154 ~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~~~~~~~ 191 (263)
T 1hyq_A 154 KIVAERLGTKVLGVVVNRITTLGIE--MAKNEIEAILEAK 191 (263)
T ss_dssp HHHHHHHTCEEEEEEEEEECTTTHH--HHHHHHHHHTTSC
T ss_pred HHHHHhcCCCeeEEEEccCCccccc--chHHHHHHHhCCC
Confidence 333444466544 788998877654 4455555666664
No 288
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=43.37 E-value=8 Score=33.57 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=17.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVG 92 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIG 92 (507)
+.|.++.+.| |-|.||||+.--
T Consensus 7 ~~gei~~l~G----~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIG----SSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEEC----CTTSCHHHHHHH
T ss_pred CCCEEEEEEC----CCCCCHHHHHHH
Confidence 4588999988 569999998754
No 289
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=43.32 E-value=19 Score=35.69 Aligned_cols=37 Identities=32% Similarity=0.272 Sum_probs=25.6
Q ss_pred CCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCccccc
Q 010562 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (507)
Q Consensus 80 TP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNL 140 (507)
=|-|.||||++--|..-|. . .| ++|...+++|+++.+
T Consensus 99 GpsGSGKSTl~~~L~~ll~-~----------~~-------------~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 99 GSVAVGKSTTSRVLKALLS-R----------WP-------------DHPNVEVITTDGFLY 135 (321)
T ss_dssp CCTTSSHHHHHHHHHHHHT-T----------ST-------------TCCCEEEEEGGGGBC
T ss_pred CCCCCCHHHHHHHHHHHhc-c----------cC-------------CCCeEEEEeeccccc
Confidence 3679999999877765552 1 12 135578899998765
No 290
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein STRU initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Probab=43.26 E-value=25 Score=28.83 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=47.1
Q ss_pred ccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEecC-----CCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcCcccCC
Q 010562 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNM-----FATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSDL 500 (507)
Q Consensus 426 ~enl~al~~G~~NL~kHIeni~~fGvpvVVAIN~-----F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~~ 500 (507)
+++.+.+..++.|...+++... ++.++|.+|- |..|++ -.+.|.++ .+.|+. +.+|..-.+.=.-..++|
T Consensus 12 ~~d~~~~~~~L~~a~n~~~~~~--~~~i~vv~~G~av~~~~~~~~-~~~~i~~L-~~~gV~-~~~C~~~l~~~~i~~~~L 86 (113)
T 1l1s_A 12 EDDESRVLLLISNVRNLMADLE--SVRIEVVAYSMGVNVLRRDSE-YSGDVSEL-TGQGVR-FCACSNTLRASGMDGDDL 86 (113)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCS--SEEEEEEECGGGGGGGBTTCT-THHHHHHH-HHTTCE-EEEEHHHHHHTTCCGGGB
T ss_pred CCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEechHHHHHHcCCh-HHHHHHHH-HHCCCE-EEecHHHHHHcCCCHHHc
Confidence 4567788899999988887744 4677777763 443332 23444444 468996 899988766544444555
Q ss_pred CC
Q 010562 501 PP 502 (507)
Q Consensus 501 ~~ 502 (507)
+|
T Consensus 87 ~~ 88 (113)
T 1l1s_A 87 LE 88 (113)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 291
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=43.00 E-value=8.8 Score=32.19 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=18.7
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|++||. -|.||||++--|++.|
T Consensus 2 ~I~l~G~----~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGF----MCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESC----TTSCHHHHHHHHHHHH
T ss_pred eEEEECC----CCCCHHHHHHHHHHHh
Confidence 4777775 6999999998888776
No 292
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=42.96 E-value=18 Score=29.95 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=25.6
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcc
Q 010562 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
.++|++|++|+..-..+ ...+.+++++++.++. +..++
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 161 (187)
T 2a9k_A 122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS 161 (187)
T ss_dssp TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECC
T ss_pred CCCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC
Confidence 58999999999753221 2245567788888885 55444
No 293
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=42.90 E-value=37 Score=33.68 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=26.6
Q ss_pred hHHHHHHHHhhcCC-cEEEEecCCCCCCHHHHHHHH
Q 010562 438 NLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVR 472 (507)
Q Consensus 438 NL~kHIeni~~fGv-pvVVAIN~F~tDT~~Ei~~v~ 472 (507)
....|+..++.+|+ |+||++|+-.-.++++++...
T Consensus 116 qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 116 QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHH
Confidence 66778888888887 899999998766666554433
No 294
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=42.76 E-value=23 Score=28.74 Aligned_cols=49 Identities=8% Similarity=-0.097 Sum_probs=29.4
Q ss_pred hHHHHHHHHhh--cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcc
Q 010562 438 NLARHIANTKA--YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 438 NL~kHIeni~~--fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
++...++.+++ .++|+++++|+..-..+. ..+.+++++++.|+. +..++
T Consensus 95 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 147 (168)
T 1z2a_A 95 AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTS 147 (168)
T ss_dssp THHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECB
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEe
Confidence 44444444444 489999999996532211 134456778888885 44443
No 295
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=42.75 E-value=6.8 Score=32.53 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
...+-|+++| |.|.||||++..+++.+.
T Consensus 41 ~~~~~vll~G----~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLG----DPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEES----CGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4466788887 569999999999999984
No 296
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=42.67 E-value=4.6 Score=42.51 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=28.6
Q ss_pred cccCceeeecchhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 47 LYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 47 ~YG~~kAKi~l~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.||...++=.++.. + ..|+-++++| |-|.||||++..|++.+.
T Consensus 43 i~G~~~~l~~l~~~--i---~~g~~vll~G----p~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 43 VIGQEHAVEVIKTA--A---NQKRHVLLIG----EPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCSCHHHHHHHHHH--H---HTTCCEEEEC----CTTSSHHHHHHHHHHTSC
T ss_pred EECchhhHhhcccc--c---cCCCEEEEEe----CCCCCHHHHHHHHhccCC
Confidence 46765554222211 2 2356788877 569999999999988773
No 297
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=42.43 E-value=30 Score=31.32 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=39.8
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 436 ~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
...+++.|+..+.+|.+.||.- +. .+.++.+.+.|++.|+. +.+-+|+
T Consensus 88 ~~~~~~~i~~A~~lGa~~v~~~---p~--~~~l~~l~~~a~~~gv~-l~lEn~~ 135 (257)
T 3lmz_A 88 EEEIDRAFDYAKRVGVKLIVGV---PN--YELLPYVDKKVKEYDFH-YAIHLHG 135 (257)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEE---EC--GGGHHHHHHHHHHHTCE-EEEECCC
T ss_pred HHHHHHHHHHHHHhCCCEEEec---CC--HHHHHHHHHHHHHcCCE-EEEecCC
Confidence 4578899999999999999963 32 46788889999999996 8888885
No 298
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=42.41 E-value=55 Score=27.63 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=29.5
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEccc
Q 010562 441 RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 441 kHIeni~~f--GvpvVVAIN~F~tDT~~E--------------i~~v~~~~~~~g~~~~~~~~~ 488 (507)
+.++.++++ ++|+|+++|+..-..+.+ .+...+++++.|...+..++.
T Consensus 111 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 111 EWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp THHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred HHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 344555554 899999999976433221 245667888888722554443
No 299
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=42.28 E-value=18 Score=38.28 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=27.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
.+.+|++||. -|.||||++.-|++.|+ ..|++.
T Consensus 371 ~~~~I~l~G~----~GsGKSTia~~La~~L~-~~G~~~ 403 (546)
T 2gks_A 371 QGFCVWLTGL----PCAGKSTIAEILATMLQ-ARGRKV 403 (546)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred cceEEEccCC----CCCCHHHHHHHHHHHhh-hcCCeE
Confidence 4788999985 69999999999999995 556554
No 300
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=42.28 E-value=8 Score=43.43 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVG 92 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIG 92 (507)
|.+|+|+||+++ |+||||++-.
T Consensus 34 P~~~l~viTGvS----GSGKSSLafd 55 (842)
T 2vf7_A 34 PRDALVVFTGVS----GSGKSSLAFG 55 (842)
T ss_dssp ESSSEEEEESST----TSSHHHHHTT
T ss_pred cCCCEEEEECCC----CCCHHHHHHH
Confidence 789999999975 9999999876
No 301
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=41.83 E-value=15 Score=34.88 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=18.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLC 94 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~ 94 (507)
..++|.|||. -|.||||++--|+
T Consensus 74 ~~~iI~I~G~----~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGI----SGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEEC----TTSCHHHHHHHHH
T ss_pred CCEEEEEECC----CCCCHHHHHHHHH
Confidence 3568999994 6999999987776
No 302
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=41.66 E-value=14 Score=35.59 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=26.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
++-|+++| |.|.|||+++.+++..+...-|.++
T Consensus 152 ~~~lll~G----~~GtGKT~La~aia~~~~~~~g~~v 184 (308)
T 2qgz_A 152 QKGLYLYG----DMGIGKSYLLAAMAHELSEKKGVST 184 (308)
T ss_dssp CCEEEEEC----STTSSHHHHHHHHHHHHHHHSCCCE
T ss_pred CceEEEEC----CCCCCHHHHHHHHHHHHHHhcCCcE
Confidence 56788887 6799999999999999931556654
No 303
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=41.54 E-value=74 Score=31.30 Aligned_cols=89 Identities=7% Similarity=-0.037 Sum_probs=52.3
Q ss_pred CCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHH
Q 010562 362 PGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLAR 441 (507)
Q Consensus 362 ~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~k 441 (507)
.-||||-.++-|.+.-..-.+ + .-|.+|+|++-. .-++.+..+|+.+|.+
T Consensus 247 ~yD~VIID~pP~~~~~~~~al---~-----~aD~vliv~~p~----------------------~~~~~~~~~~l~~l~~ 296 (403)
T 3ez9_A 247 DYDFIFIDTGPHLDPFLLNGL---A-----ASDLLLTPTPPA----------------------QVDFHSTLKYLTRLPE 296 (403)
T ss_dssp GCSEEEEEECSSCSHHHHHHH---H-----HCSEEEEEECSS----------------------HHHHHHHHHHHHTHHH
T ss_pred cCCEEEEECCCCccHHHHHHH---H-----HCCEEEEEecCc----------------------hhhHHHHHHHHHHHHH
Confidence 348888887766542111111 1 247888887422 2245567889999999
Q ss_pred HHHHHhhcCCc-----EEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 442 HIANTKAYGAN-----VVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 442 HIeni~~fGvp-----vVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
-++.++++|.+ +|..+|+|.. ....-+...+..+..|..
T Consensus 297 ~~~~l~~~~~~~~l~giv~vl~~~~~-~~~~~~~~~~~~~~~g~~ 340 (403)
T 3ez9_A 297 MLEQLEEEGVEPRLSASIGFMSKMTG-KRDHETSHSLAREVYASN 340 (403)
T ss_dssp HHHHHHHTTCCCCCCEEEEEECC----CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCCceeEEEEEEeccCC-chhHHHHHHHHHHHhhHh
Confidence 99999998776 4668899863 322222233333446764
No 304
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=41.54 E-value=34 Score=31.88 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.++++.| |-|.||||+..-|+-.+
T Consensus 33 ~~G~~~~i~G----~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTS----GSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 5799999998 56999999998887666
No 305
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=41.43 E-value=24 Score=28.32 Aligned_cols=39 Identities=21% Similarity=0.055 Sum_probs=25.0
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 448 ~fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
..++|+++++|+..-..+.+ .+...+++++.|.. +..++
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 146 (167)
T 1kao_A 106 YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETS 146 (167)
T ss_dssp TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEEC
T ss_pred CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEec
Confidence 36899999999975322211 23456777778886 44443
No 306
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=41.18 E-value=16 Score=37.60 Aligned_cols=69 Identities=20% Similarity=0.192 Sum_probs=41.9
Q ss_pred CCCCcchhcccCceeeecc-hhhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHH----HHhhhcCCcEEEEecCCC
Q 010562 39 NLKPNHYDLYGKYKAKVLL-SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ----ALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 39 Gi~~~~le~YG~~kAKi~l-~~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~q----aL~~~lGk~a~~~lRePS 113 (507)
++++. -..||+..-+-.+ +.|.. ...++.++|.|+|+ .|-||||++.-++. ....+......+++++.+
T Consensus 123 ~~p~~-~~~~GR~~~~~~l~~~L~~-~~~~~~~vv~I~G~----gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~ 196 (549)
T 2a5y_B 123 NVPKQ-MTCYIREYHVDRVIKKLDE-MCDLDSFFLFLHGR----AGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTA 196 (549)
T ss_dssp TCBCC-CCSCCCHHHHHHHHHHHHH-HTTSSSEEEEEECS----TTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCS
T ss_pred CCCCC-CccCCchHHHHHHHHHHhc-ccCCCceEEEEEcC----CCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCC
Confidence 44433 3337986544333 22222 11234689999997 79999999887764 343455666777777653
No 307
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=40.98 E-value=17 Score=35.20 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+.+|.|+| |.|.||||++--|...|.
T Consensus 29 ~~~~ii~I~G----~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSG----PQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEEC----CTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHhh
Confidence 4567888887 579999999999988884
No 308
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=40.88 E-value=24 Score=29.01 Aligned_cols=40 Identities=13% Similarity=-0.026 Sum_probs=25.7
Q ss_pred hhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 447 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 447 ~~fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
...++|++|++|+..-..+.+ .+...+++++.++. +..++
T Consensus 111 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S 152 (181)
T 2fn4_A 111 DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEAS 152 (181)
T ss_dssp TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECB
T ss_pred CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEec
Confidence 356899999999975433222 24456777778875 44444
No 309
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=40.87 E-value=12 Score=33.82 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=19.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+.|+++.+.| |-|.||||+.--|+.
T Consensus 21 ~~G~~~~lvG----psGsGKSTLl~~L~g 45 (218)
T 1z6g_A 21 NNIYPLVICG----PSGVGKGTLIKKLLN 45 (218)
T ss_dssp -CCCCEEEEC----STTSSHHHHHHHHHH
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHh
Confidence 4688888887 789999998765543
No 310
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.76 E-value=15 Score=31.33 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.+++| |-|.||||+.-.|.-+|.
T Consensus 28 ~~~i~G----~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVG----ANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEE----CTTSSHHHHHHHHHHHTT
T ss_pred cEEEEC----CCCCCHHHHHHHHHHHHc
Confidence 888888 679999999877776663
No 311
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=40.69 E-value=25 Score=34.28 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.+.|.+|.+.| |-|.||||++--|+.-+
T Consensus 87 ~~~g~ivgI~G----~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAG----SVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEEC----CTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEEC----CCCchHHHHHHHHHhhc
Confidence 36688998888 56999999998887666
No 312
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=40.69 E-value=20 Score=33.11 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lG 102 (507)
+.++-||++| |.|.||||++..+++.++ ..+
T Consensus 65 ~~~~~vll~G----~~GtGKT~la~~la~~l~-~~~ 95 (309)
T 3syl_A 65 TPTLHMSFTG----NPGTGKTTVALKMAGLLH-RLG 95 (309)
T ss_dssp CCCCEEEEEE----CTTSSHHHHHHHHHHHHH-HTT
T ss_pred CCCceEEEEC----CCCCCHHHHHHHHHHHHH-hcC
Confidence 4456688888 779999999999999995 444
No 313
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=40.69 E-value=30 Score=29.71 Aligned_cols=40 Identities=15% Similarity=-0.005 Sum_probs=26.5
Q ss_pred hhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcc
Q 010562 447 KAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 447 ~~fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
...++|++|++|+-.-..+. ..+.+++++++.|+. +..++
T Consensus 110 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 151 (206)
T 2bcg_Y 110 ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETS 151 (206)
T ss_dssp SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECC
T ss_pred cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEe
Confidence 34579999999997654322 234566778888886 44443
No 314
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=40.66 E-value=31 Score=33.24 Aligned_cols=46 Identities=24% Similarity=0.164 Sum_probs=33.1
Q ss_pred CCcEEEEecC-CCC--CCHHHHHHHHHHHHHcCCCeEEEccccc-ccCcC
Q 010562 450 GANVVVAVNM-FAT--DSKAELNAVRNAAMAAGAFDAVVCSHHA-HGGKG 495 (507)
Q Consensus 450 GvpvVVAIN~-F~t--DT~~Ei~~v~~~~~~~g~~~~~~~~~wa-~GG~G 495 (507)
|.|+=|.|-. +-. .|++|+...++.|.++|+..+-.|+.|. .||.-
T Consensus 127 ~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~~~~gAt 176 (231)
T 3ndo_A 127 AATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFHPSGGAS 176 (231)
T ss_dssp TSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCCTTCSCC
T ss_pred CCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCCCCCCCC
Confidence 5666665553 111 2799999999999999998666667797 67653
No 315
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=40.51 E-value=8.8 Score=35.23 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+|.+|| |.|.||||++--|++.|+
T Consensus 23 ~iI~I~G----~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSG----GTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEEC----STTSSHHHHHHHHHHHTT
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHHhh
Confidence 4677887 569999999998888774
No 316
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=40.50 E-value=46 Score=27.53 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=25.4
Q ss_pred hcCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcc
Q 010562 448 AYGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 448 ~fGvpvVVAIN~F~tDT-~~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
..++|+||++|+..-.. ....+.+.+++++.+.. +..++
T Consensus 107 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S 146 (189)
T 4dsu_A 107 SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETS 146 (189)
T ss_dssp CSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECC
T ss_pred CCCCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEe
Confidence 35899999999976422 22234556777788886 44443
No 317
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=40.36 E-value=1e+02 Score=27.95 Aligned_cols=58 Identities=22% Similarity=0.153 Sum_probs=40.6
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEe-------cCCCC-------C-CHHH-------HHHHHHHHHHcCCCeEEEccc
Q 010562 431 LVEAGCVNLARHIANTKAYGANVVVAV-------NMFAT-------D-SKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 431 al~~G~~NL~kHIeni~~fGvpvVVAI-------N~F~t-------D-T~~E-------i~~v~~~~~~~g~~~~~~~~~ 488 (507)
..++.+..+++.|+.++.+|.+.||.. -.+.. . +++. +..+.+.|++.|+. +++-+|
T Consensus 84 ~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~ 162 (301)
T 3cny_A 84 GIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLK-VAYHHH 162 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCE-EEEECC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCE-EEEecC
Confidence 456788899999999999999998875 12211 1 4443 34455666788996 777776
Q ss_pred c
Q 010562 489 H 489 (507)
Q Consensus 489 w 489 (507)
+
T Consensus 163 ~ 163 (301)
T 3cny_A 163 M 163 (301)
T ss_dssp T
T ss_pred C
Confidence 4
No 318
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=40.34 E-value=55 Score=31.28 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=39.5
Q ss_pred HHhhHHHHHHHHhhcCCcEEEEecC-C-----CCCCHHHHHHHHHHHHHcCCCeEEEccc
Q 010562 435 GCVNLARHIANTKAYGANVVVAVNM-F-----ATDSKAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 435 G~~NL~kHIeni~~fGvpvVVAIN~-F-----~tDT~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
-+++..+-|+.++++|++|.+.|.. | ..-+++++..+.+.+.+.|+..+.+++.
T Consensus 118 ~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt 177 (295)
T 1ydn_A 118 SIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDT 177 (295)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCC
Confidence 3557777789999999999876664 4 1234667766677777999987888863
No 319
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=40.29 E-value=67 Score=32.72 Aligned_cols=68 Identities=9% Similarity=0.101 Sum_probs=38.1
Q ss_pred eecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEee-----cc--cccccccccccccccccCCCCcce--EE
Q 010562 327 TLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTE-----AG--FGADIGAEKFMNIKCRYSGLTPQC--AV 397 (507)
Q Consensus 327 TlEgtPa~VHgGPFANIAHG~nSviAtk~ALkLag~~dyVVTE-----AG--FGaDlGaEKF~dIKCR~sgl~Pda--vV 397 (507)
.+++.=.++|| +.||.+-.-.-+......+..+.-|. +- ||. .||..+---...-.+|++ ++
T Consensus 50 ~I~d~~~ivHG------p~GC~~~~~~~~~~~~~~ep~~~sT~l~E~diV~~fGg---~~kL~~aI~~~~~~~P~~~~I~ 120 (437)
T 3aek_A 50 KMQDAFFLVVG------SRTCAHLLQAAAGVMIFAEPRFGTAVLEEQDLAGLADA---HKELDREVAKLLERRPDIRQLF 120 (437)
T ss_dssp HCTTEEEEEEE------CHHHHHHHHHHHGGGGGSCCSEEEEECCGGGGSSSCCH---HHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCCCeEEEEEC------CchhhhhhhhhhhhhccCCCcceeecccchhhhhcCCC---HHHHHHHHHHHHHhCCCccEEE
Confidence 35667789997 47898876554333222233343332 23 663 355433211111468999 99
Q ss_pred EEeeeh
Q 010562 398 IVATIR 403 (507)
Q Consensus 398 lVaTvR 403 (507)
|++|.-
T Consensus 121 V~tTC~ 126 (437)
T 3aek_A 121 LVGSCP 126 (437)
T ss_dssp EEECHH
T ss_pred EEcCCH
Confidence 999864
No 320
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=40.24 E-value=66 Score=26.32 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=23.1
Q ss_pred cCCcEEEEecCCCCCCHH---HHHHHHHHHHH-cCCCeEEEcc
Q 010562 449 YGANVVVAVNMFATDSKA---ELNAVRNAAMA-AGAFDAVVCS 487 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~---Ei~~v~~~~~~-~g~~~~~~~~ 487 (507)
.++|++|++|+..-..++ ..+.+.+++++ .+.. +..++
T Consensus 117 ~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~-~~~~S 158 (182)
T 1ky3_A 117 ETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP-LFLTS 158 (182)
T ss_dssp TTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC-EEEEB
T ss_pred CCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCe-EEEEe
Confidence 789999999997652211 23445666663 4454 44444
No 321
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=39.93 E-value=20 Score=33.55 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=23.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..++.|+++| |.|.||||++.-+++.+.
T Consensus 42 ~~~~~vll~G----~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYG----LTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECB----CTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4567889988 579999999999998884
No 322
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=39.78 E-value=20 Score=36.38 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=30.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSl 114 (507)
+-|.|-|||.+ |||||+-=|++.| ...|.++. ....|.+
T Consensus 51 ~~~vI~VTGTn------GKtTT~~~l~~iL-~~~G~~vg-~~~Sphl 89 (442)
T 1o5z_A 51 EYKTIHIGGTN------GKGSVANMVSNIL-VSQGYRVG-SYYSPHL 89 (442)
T ss_dssp SSEEEEEECSS------SHHHHHHHHHHHH-HHHTCCEE-EECCSCS
T ss_pred cCCEEEEECCc------CHHHHHHHHHHHH-HHCCCCEE-EECCCCc
Confidence 35799999986 9999999999999 57898854 3455544
No 323
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=39.54 E-value=27 Score=33.63 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHcCCCCcchhcccCceeeec--chhhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 27 EPLHISEIAQELNLKPNHYDLYGKYKAKVL--LSVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 27 ~~~~I~~iA~~lGi~~~~le~YG~~kAKi~--l~~l~~~~-~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
...++.++..++ -++++..+.....|+ +..|+++- .-+.|.+|+|+| +.|.||||.+.-++...
T Consensus 26 ~~~~~~~~~~~~---~~~~~~~~~~~~~i~TG~~~LD~~lgGl~~G~l~li~G----~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 26 DDGSIDEALVTV---YEEIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAA----RPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CCCCCHHHHHHH---HHHHHTCSSSCCSBCCSCHHHHHHHSSBCTTCEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHH---HHHHHhccCCCCCccCChHHHHhhcCCCCCCcEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 355677766543 133332211122233 33455532 236799999999 46999999988887655
No 324
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=39.33 E-value=7.7 Score=35.53 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.5
Q ss_pred HHhhcCCCCCCCCCCHHHHhhhhcC
Q 010562 198 LKKLGISKTKPEDLTPEEINRFARL 222 (507)
Q Consensus 198 l~klgi~~~~p~~lt~ee~~~~~~L 222 (507)
++++||+.+...+||+||+.++...
T Consensus 79 ~~~~gI~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 79 LLDLNFDNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp GTTTTCCSCBTTSCCSSTTHHHHSS
T ss_pred HHHcCCCceEcCCCCHHHHHHHHHH
Confidence 5789997777999999999988866
No 325
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=39.22 E-value=30 Score=34.25 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=28.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
+.|.++++.| |.|.||||++.-++..+. +-|.+++.
T Consensus 59 ~~G~iv~I~G----~pGsGKTtLal~la~~~~-~~g~~vly 94 (349)
T 2zr9_A 59 PRGRVIEIYG----PESSGKTTVALHAVANAQ-AAGGIAAF 94 (349)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHHH-HTTCCEEE
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hCCCeEEE
Confidence 5799999998 679999999999987773 55555443
No 326
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=38.91 E-value=7.4 Score=39.02 Aligned_cols=26 Identities=27% Similarity=0.133 Sum_probs=23.1
Q ss_pred Eccccc-------chhcccCchHHHHHHHHHhc
Q 010562 335 VHAGPF-------ANIAHGNSSIVADKIALKLV 360 (507)
Q Consensus 335 VHgGPF-------ANIAHG~nSviAtk~ALkLa 360 (507)
-||||| .++.||.+|.-+=.-|++++
T Consensus 280 ~~gga~llG~~~pvi~~~g~a~~~~i~~ai~~A 312 (345)
T 1vi1_A 280 NYGGASLFGLKAPVIKAHGSSDSNAVFRAIRQA 312 (345)
T ss_dssp GSCCEEEETBSSCEEECCTTCCHHHHHHHHHHH
T ss_pred ccccceeecCCccEEEeCCCCCHHHHHHHHHHH
Confidence 699999 89999999998888888776
No 327
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=38.47 E-value=65 Score=29.14 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-----cC--CC--CCCHHHHH-------HHHHHHHHcCCCeEEEcccc
Q 010562 426 NENVALVEAGCVNLARHIANTKAYGANVVVAV-----NM--FA--TDSKAELN-------AVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 426 ~enl~al~~G~~NL~kHIeni~~fGvpvVVAI-----N~--F~--tDT~~Ei~-------~v~~~~~~~g~~~~~~~~~w 489 (507)
.++.+.-++.+..+++.|+..+.+|.+.||.. .+ |. .++++.++ .+.+.|++.|+. +++-++.
T Consensus 77 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~ 155 (290)
T 2qul_A 77 SPDKSVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGII-YALEVVN 155 (290)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCE-EEEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeCc
Confidence 45556678889999999999999999999852 22 32 24454443 344556678996 7776664
No 328
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=38.31 E-value=24 Score=35.38 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=30.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSl 114 (507)
+.|.|-|||.+ |||||+-=|++.| ...|.++. ..--|.+
T Consensus 38 ~~~vI~VtGTn------GKtTT~~~l~~iL-~~~G~~vg-~~~sp~l 76 (428)
T 1jbw_A 38 QGRYIHVTGTN------GKGSAANAIAHVL-EASGLTVG-LYTSPFI 76 (428)
T ss_dssp SSCEEEEECSS------CHHHHHHHHHHHH-HHTTCCEE-EECSSCS
T ss_pred cCcEEEEECCC------ChHHHHHHHHHHH-HHCCCCEE-EEeCCcc
Confidence 45799999986 9999999999999 47788754 3344443
No 329
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=38.28 E-value=35 Score=29.14 Aligned_cols=50 Identities=16% Similarity=0.048 Sum_probs=31.0
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccc
Q 010562 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 438 NL~kHIeni~~---fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
++...++.+++ .++|+|+++|+..-..+. ..+.+++++++.|+. +..++.
T Consensus 98 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 152 (203)
T 1zbd_A 98 AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEASA 152 (203)
T ss_dssp HHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECBT
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEEC
Confidence 44444444444 589999999997643321 234566778888885 554443
No 330
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=38.21 E-value=24 Score=35.50 Aligned_cols=32 Identities=25% Similarity=0.159 Sum_probs=27.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
.+.|-||+.+ |||||+-=|++.| ...|+++..
T Consensus 104 ~~vI~VTGTn------GKTTT~~ml~~iL-~~~g~~~~~ 135 (439)
T 2x5o_A 104 APIVAITGSN------GKSTVTTLVGEMA-KAAGVNVGV 135 (439)
T ss_dssp SCEEEEECSS------SHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhcCCCEEE
Confidence 6899999987 9999999999999 578988653
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=38.08 E-value=20 Score=34.31 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.+|-++| |-|.||||++--|+.-+
T Consensus 78 ~~g~iigI~G----~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAG----SVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEE----CTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEC----CCCCCHHHHHHHHHHHH
Confidence 5688998988 56999999987776555
No 332
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=37.92 E-value=17 Score=34.29 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+|+=||.+| |.|.||||++..|.+
T Consensus 15 ~G~gvli~G----~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITG----EANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEE----SSSSSHHHHHHHHHH
T ss_pred CCEEEEEEc----CCCCCHHHHHHHHHH
Confidence 588899988 679999999999876
No 333
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=37.90 E-value=46 Score=32.92 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=33.8
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCC-CHHHHH----HHHHHHHHcCC----CeEEEcccc
Q 010562 438 NLARHIANTKAYGAN-VVVAVNMFATD-SKAELN----AVRNAAMAAGA----FDAVVCSHH 489 (507)
Q Consensus 438 NL~kHIeni~~fGvp-vVVAIN~F~tD-T~~Ei~----~v~~~~~~~g~----~~~~~~~~w 489 (507)
...+|++.++.+|+| +||++|+-.-. .++.++ .+++++++.|. ..++.++.+
T Consensus 115 qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~ 176 (405)
T 2c78_A 115 QTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSAL 176 (405)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHH
Confidence 456788888889999 89999997543 333333 45567777763 125555444
No 334
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=37.73 E-value=38 Score=32.35 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=38.7
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEcccccccC
Q 010562 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGG 493 (507)
Q Consensus 439 L~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~-g~~~~~~~~~wa~GG 493 (507)
+..|++.+.+.|+|+|+.-=- -++++++.|+++|++. ++. ++.+..|+.|.
T Consensus 58 ~~~~~~~a~~~g~~~VigTTG---~~~e~~~~l~~aa~~~~~~~-vv~a~N~siGv 109 (245)
T 1p9l_A 58 VMGNLEFLIDNGIHAVVGTTG---FTAERFQQVESWLVAKPNTS-VLIAPNFAIGA 109 (245)
T ss_dssp HHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHHTSTTCE-EEECSCCCHHH
T ss_pred HHHHHHHHHHcCCCEEEcCCC---CCHHHHHHHHHHHHhCCCCC-EEEECCccHHH
Confidence 455677788899999996432 3567889999999976 775 77888887664
No 335
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=37.62 E-value=32 Score=29.58 Aligned_cols=49 Identities=14% Similarity=0.010 Sum_probs=28.9
Q ss_pred hHHHHHHHHhh----cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcc
Q 010562 438 NLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 438 NL~kHIeni~~----fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
++...++.+.+ .++|+||++|+..-..+. ..+...+++++.|+. +..++
T Consensus 113 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S 167 (201)
T 3oes_A 113 VIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FMESS 167 (201)
T ss_dssp HHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEEEe
Confidence 34444444443 489999999998643222 123456778888885 44443
No 336
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=37.48 E-value=50 Score=28.63 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=30.1
Q ss_pred HhhHHHHHHHHhh----cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEc
Q 010562 436 CVNLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 436 ~~NL~kHIeni~~----fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~ 486 (507)
+.++.+.++.+++ .++|+|++.|+..-..+. ..+...+++++.+.. +..+
T Consensus 112 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e~ 167 (195)
T 3cbq_A 112 FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIET 167 (195)
T ss_dssp HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEEE
Confidence 3344455555544 589999999987543221 234456778888875 4433
No 337
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=37.48 E-value=70 Score=28.51 Aligned_cols=56 Identities=9% Similarity=0.107 Sum_probs=38.3
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCC--CCHH-------HHHHHHHHHHHcCCCeEEEccc
Q 010562 432 VEAGCVNLARHIANTKAYGANVVVAV-NMFAT--DSKA-------ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 432 l~~G~~NL~kHIeni~~fGvpvVVAI-N~F~t--DT~~-------Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
-++.++.+++.|+..+.+|.+.||.. ..++. ++++ -+..+.+.|++.|+. .++-++
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~ 145 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKR-ILVEAL 145 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEECCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 45667899999999999999999873 33332 2222 234445566678996 777665
No 338
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=37.43 E-value=20 Score=31.04 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=25.9
Q ss_pred hhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 447 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 447 ~~fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
...++|+||++|+..-..+.+ .+.+.+++++.++. +..++
T Consensus 127 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S 168 (200)
T 2o52_A 127 ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETS 168 (200)
T ss_dssp TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC
T ss_pred cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe
Confidence 345899999999975432222 24456788888875 44443
No 339
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=37.40 E-value=15 Score=34.07 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.0
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHH
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
++|+++|. .|.||||.+--|++.
T Consensus 3 ~~I~l~G~----~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGC----PGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECC----TTSSHHHHHHHHHHH
T ss_pred eEEEEECC----CCCCHHHHHHHHHHh
Confidence 57888885 699999998888774
No 340
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=37.18 E-value=28 Score=33.71 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FG 119 (507)
..|++.+.|| |-|.||||-.++++.-. ...|+++++ =+|+.+.-+|
T Consensus 17 ~~g~l~v~~G----~MgsGKTT~lL~~~~r~-~~~g~kvli--~kp~~D~Ryg 62 (234)
T 2orv_A 17 TRGQIQVILG----PMFSGKSTELMRRVRRF-QIAQYKCLV--IKYAKDTRYS 62 (234)
T ss_dssp -CCEEEEEEC----CTTSCHHHHHHHHHHHH-HTTTCCEEE--EEETTCCCC-
T ss_pred CceEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCeEEE--EeecCCccch
Confidence 4599999998 56999999999998776 356777553 3588876554
No 341
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=37.11 E-value=20 Score=29.14 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=22.8
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
-++|++|++|+..-..+.+ .+...+++++.++. +..++
T Consensus 108 ~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S 147 (172)
T 2erx_A 108 ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETS 147 (172)
T ss_dssp -CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECB
T ss_pred CCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEec
Confidence 3799999999965322222 23445667777775 44443
No 342
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=37.02 E-value=12 Score=32.90 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=18.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+..|.+|| |.|.||||++--|+.-+
T Consensus 5 ~~~i~i~G----~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDG----PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 34677777 57999999887776655
No 343
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=36.82 E-value=20 Score=37.37 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=27.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+.+.|-|||.+ ||||||-=|++.| ...|+++.
T Consensus 121 ~~~vIaVTGTn------GKTTTt~li~~iL-~~~G~~~~ 152 (524)
T 3hn7_A 121 SRHVIAVAGTH------GKTTTTTMLAWIL-HYAGIDAG 152 (524)
T ss_dssp GSEEEEEECSS------CHHHHHHHHHHHH-HHTTCCCE
T ss_pred cCcEEEEECCC------CHHHHHHHHHHHH-HHcCCCce
Confidence 35799999987 9999999999999 58888764
No 344
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=36.64 E-value=11 Score=37.66 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=35.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
..+.+|++-|+ -|.||||+.-=|.+.|+ -.|.+ ++++++|+
T Consensus 84 ~~~vlIvfEG~----DgAGKgt~Ik~L~e~Ld-prg~~-V~~~~~Pt 124 (304)
T 3czq_A 84 GKRVMAVFEGR----DAAGKGGAIHATTANMN-PRSAR-VVALTKPT 124 (304)
T ss_dssp CCCEEEEEEES----TTSSHHHHHHHHHTTSC-TTTEE-EEECCSCC
T ss_pred CCCeEEEEeCC----CCCCHHHHHHHHHHHhc-ccCCe-EEEeCCcC
Confidence 45899999998 59999999999999994 66876 67899998
No 345
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=36.52 E-value=46 Score=28.79 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=26.9
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 442 HIANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 442 HIeni~~fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
.+......++|+|+++|+..-..+.+ .+.+.++++..+.. +..++
T Consensus 109 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 155 (218)
T 4djt_A 109 EFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEIS 155 (218)
T ss_dssp HHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEEB
T ss_pred HHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEEe
Confidence 34444445899999999987554332 24456777777775 44443
No 346
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=36.32 E-value=51 Score=28.51 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=21.1
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHH
Q 010562 442 HIANTKAYGANVVVAVNMFATDSKAELN 469 (507)
Q Consensus 442 HIeni~~fGvpvVVAIN~F~tDT~~Ei~ 469 (507)
.++.+++.++|+||++|+-.-..+.+++
T Consensus 136 ~~~~l~~~~~p~i~v~nK~Dl~~~~~~~ 163 (223)
T 4dhe_A 136 MIEWFAPTGKPIHSLLTKCDKLTRQESI 163 (223)
T ss_dssp HHHHHGGGCCCEEEEEECGGGSCHHHHH
T ss_pred HHHHHHhcCCCEEEEEeccccCChhhHH
Confidence 3455667999999999998766666643
No 347
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=36.11 E-value=16 Score=33.05 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=20.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.-.+|.+||. -|+||||++--|++.|
T Consensus 11 ~~~iIgltG~----~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGK----IGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECS----TTSSHHHHHHHHHHHH
T ss_pred cceEEEEECC----CCCCHHHHHHHHHHhc
Confidence 3457888885 6999999998777654
No 348
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=36.06 E-value=63 Score=31.77 Aligned_cols=45 Identities=22% Similarity=0.140 Sum_probs=33.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcC
Q 010562 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 450 GvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
|.|+=|.|.. .-=|++|+...++.|.++|+..+-.|+.|..||.-
T Consensus 158 ~~~lKVIlEt-~~Lt~eei~~A~~ia~eaGADfVKTSTGf~~~GAT 202 (260)
T 3r12_A 158 GKVVKVIIET-CYLDTEEKIAACVISKLAGAHFVKTSTGFGTGGAT 202 (260)
T ss_dssp TSEEEEECCG-GGCCHHHHHHHHHHHHHTTCSEEECCCSSSSCCCC
T ss_pred CCcEEEEEeC-CCCCHHHHHHHHHHHHHhCcCEEEcCCCCCCCCCC
Confidence 5666666653 11267999999999999999866677888877743
No 349
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=35.78 E-value=12 Score=32.78 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.8
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|++|| |-|.||||++-=|++.+
T Consensus 3 I~l~G----~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMG----LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEC----STTSSHHHHHHHHHHHH
T ss_pred EEEEC----CCCCCHHHHHHHHHHHh
Confidence 66777 45999999998888776
No 350
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=35.76 E-value=16 Score=31.86 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
+.|.++.+.| |-|.||||+..-|+-.
T Consensus 23 ~~G~~~~l~G----~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFG----EFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEE----STTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHH
Confidence 4689999988 6799999998777543
No 351
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=35.67 E-value=44 Score=29.49 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=14.3
Q ss_pred HHHHHHhhcCCcE-EEEecCCCCCCH
Q 010562 441 RHIANTKAYGANV-VVAVNMFATDSK 465 (507)
Q Consensus 441 kHIeni~~fGvpv-VVAIN~F~tDT~ 465 (507)
+-++.+++.|+++ -|.+|++...+.
T Consensus 153 ~~~~~l~~~~~~~~~vv~N~~~~~~~ 178 (237)
T 1g3q_A 153 KVGIVLKKAGLAILGFVLNRYGRSDR 178 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEEETSCTT
T ss_pred HHHHHHHhCCCceEEEEEecCCcccc
Confidence 3344444556554 467788876543
No 352
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=35.65 E-value=79 Score=28.68 Aligned_cols=56 Identities=7% Similarity=0.035 Sum_probs=39.3
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecCC-CC--CCH-------HHHHHHHHHHHHcCCCeEEEcccc
Q 010562 433 EAGCVNLARHIANTKAYGANVVVAVNMF-AT--DSK-------AELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 433 ~~G~~NL~kHIeni~~fGvpvVVAIN~F-~t--DT~-------~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
++.+..+++.|+..+.+|.+.|+..--+ +. +++ +-+..+.+.|++.|+. +++-+|+
T Consensus 80 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~ 145 (286)
T 3dx5_A 80 EKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMY-VLLETHP 145 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCE-EEEECCT
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCE-EEEecCC
Confidence 4557789999999999999999874322 21 233 3345566677789996 7777774
No 353
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=35.61 E-value=30 Score=33.20 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=31.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCcccc
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP~FGi 120 (507)
..|.+.++|| |-|.||||..++++.-+ ..-|+++ .+=+|++.--+|-
T Consensus 26 ~~G~I~vitG----~M~sGKTT~Llr~~~r~-~~~g~kv--li~kp~~D~R~~~ 72 (219)
T 3e2i_A 26 HSGWIECITG----SMFSGKSEELIRRLRRG-IYAKQKV--VVFKPAIDDRYHK 72 (219)
T ss_dssp -CCEEEEEEE----CTTSCHHHHHHHHHHHH-HHTTCCE--EEEEEC-------
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHH-HHcCCce--EEEEeccCCcchh
Confidence 5699999998 45999999999998777 3557775 4567777765553
No 354
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=35.38 E-value=34 Score=28.94 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=30.9
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcc
Q 010562 437 VNLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 437 ~NL~kHIeni~~---fGvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
.++.+.++.+.. .++|++|++|+..-..+ ...+.+++++++.|+. +..++
T Consensus 114 ~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 168 (193)
T 2oil_A 114 AVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETS 168 (193)
T ss_dssp HTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe
Confidence 344455555544 48999999999753221 1234567788888885 44444
No 355
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=35.22 E-value=34 Score=34.62 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=27.7
Q ss_pred hhhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 58 SVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 58 ~~l~~~~-~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..|+++- .-+.|.+|+|+| |-|.||||.+.-++..+.
T Consensus 191 ~~LD~~~gGl~~G~liiI~G----~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAA----RPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEEC----CTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 3455432 236799999998 569999999998888773
No 356
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=35.15 E-value=37 Score=35.03 Aligned_cols=50 Identities=8% Similarity=0.178 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHH----HHHHHHHc----CCCeEEEcccc
Q 010562 439 LARHIANTKAYGANVVVAVNMFATDSKAELNA----VRNAAMAA----GAFDAVVCSHH 489 (507)
Q Consensus 439 L~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~----v~~~~~~~----g~~~~~~~~~w 489 (507)
-..|+..++.+|+|+||++|+-.--.+++++. +++++++. +.. ++.++.+
T Consensus 114 t~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~-ii~vSA~ 171 (482)
T 1wb1_A 114 TGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS-IIPISAK 171 (482)
T ss_dssp HHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC-EEECCTT
T ss_pred HHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce-EEEEECc
Confidence 34567778889999999999987655655544 34455444 344 5555544
No 357
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=35.13 E-value=38 Score=29.24 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=42.8
Q ss_pred ccCHHHHHHHHhhHHHHHHHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 010562 426 NENVALVEAGCVNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (507)
Q Consensus 426 ~enl~al~~G~~NL~kHIeni~~f--GvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~ 486 (507)
+.+++.+.+ .|.+.|+..-.| |-|||+=+-.+. ++.+++.+.+.|++.|..-+.++
T Consensus 24 ~~d~~~l~~---~L~~ki~~aP~FF~~aPVVlDl~~l~--~~~dl~~L~~~l~~~gl~~vGV~ 81 (120)
T 3ghf_A 24 EAEPEVIRQ---ALEDKIAQAPAFLKHAPVVINVSGLE--SPVNWPELHKIVTSTGLRIIGVS 81 (120)
T ss_dssp SCCHHHHHH---HHHHHHHHSHHHHTTCEEEEEEEECC--SSCCHHHHHHHHHTTTCEEEEEE
T ss_pred CCCHHHHHH---HHHHHHHhChHhhCCCcEEEEccccC--ChHHHHHHHHHHHHcCCEEEEEe
Confidence 456777765 566778888884 899999888776 34679999999999999744444
No 358
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=35.04 E-value=1e+02 Score=29.88 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=27.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 450 GvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
+.|+|+++|+-.-....+++.+.+++++.+..
T Consensus 280 ~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~ 311 (357)
T 2e87_A 280 DLPFLVVINKIDVADEENIKRLEKFVKEKGLN 311 (357)
T ss_dssp TSCEEEEECCTTTCCHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEEECcccCChHHHHHHHHHHHhcCCC
Confidence 89999999999888888888888888877876
No 359
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=35.01 E-value=14 Score=37.09 Aligned_cols=27 Identities=30% Similarity=0.212 Sum_probs=21.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+..++|+++|. -|.||||.+.-|++.+
T Consensus 256 ~~~~lIil~G~----pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGF----PGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESC----TTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECC----CCCCHHHHHHHHHHhc
Confidence 45789999985 6999999887766544
No 360
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=35.01 E-value=65 Score=28.19 Aligned_cols=46 Identities=9% Similarity=-0.066 Sum_probs=31.5
Q ss_pred HhhHHHHHHHHhhcCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 436 CVNLARHIANTKAYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 436 ~~NL~kHIeni~~fGvpvV-VAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
+..+.+.++.+++.++++. |.+|++..++...-+.+.+..+..|.+
T Consensus 152 ~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~ 198 (224)
T 1byi_A 152 INHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAP 198 (224)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCC
Confidence 3456666777778899966 889999887644444455555557775
No 361
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=35.00 E-value=84 Score=29.66 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=39.2
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecCCCC-CCHHHH-------HHHHHHHHHcCCCeEEEccccc
Q 010562 433 EAGCVNLARHIANTKAYGANVVVAVNMFAT-DSKAEL-------NAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 433 ~~G~~NL~kHIeni~~fGvpvVVAIN~F~t-DT~~Ei-------~~v~~~~~~~g~~~~~~~~~wa 490 (507)
++....+++.|+..+.+|.+.||. --++. .+++++ ..+.+.|++.|+. .++-+|..
T Consensus 110 ~~~~~~~~~~i~~A~~lG~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~ 173 (305)
T 3obe_A 110 PKFDEFWKKATDIHAELGVSCMVQ-PSLPRIENEDDAKVVSEIFNRAGEITKKAGIL-WGYHNHSN 173 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCE-EEEECCSG
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCcc
Confidence 445678999999999999999995 33322 345444 3455667788996 77776653
No 362
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=34.92 E-value=32 Score=28.42 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=24.0
Q ss_pred CCcEEEEecCCCCCCHHH------------HHHHHHHHHHcCCCeEEEcc
Q 010562 450 GANVVVAVNMFATDSKAE------------LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 450 GvpvVVAIN~F~tDT~~E------------i~~v~~~~~~~g~~~~~~~~ 487 (507)
++|+++++|+..-..+.+ .+...+++++.|...+..++
T Consensus 112 ~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 161 (182)
T 3bwd_D 112 GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS 161 (182)
T ss_dssp TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE
Confidence 899999999965322222 24456778888863344443
No 363
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=34.87 E-value=24 Score=30.11 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=25.1
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccc
Q 010562 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
.++|+||+.|+..-..+. ..+.+.+++++.++. +..++.
T Consensus 131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa 171 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECSA 171 (196)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECCT
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEECC
Confidence 689999999996543221 134456777777875 554443
No 364
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=34.67 E-value=1.4e+02 Score=27.72 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=44.3
Q ss_pred cccC-HHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCC-CCHHHHHHHHHHHHH-----cCCCeEEEcccc
Q 010562 425 LNEN-VALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT-DSKAELNAVRNAAMA-----AGAFDAVVCSHH 489 (507)
Q Consensus 425 ~~en-l~al~~G~~NL~kHIeni~~fGvpvVVAI-N~F~t-DT~~Ei~~v~~~~~~-----~g~~~~~~~~~w 489 (507)
..++ .+..++.+..++++|+-.+.+|.+.||.- ..... +.++.++.+.+..++ .|+. .++-++.
T Consensus 81 ~s~d~~~~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~~~~~~~~~~~~~~~l~~l~~~a~gv~-l~lEn~~ 152 (303)
T 3aal_A 81 GNTTNLDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAGVEAGLRQIIRGLNEVLTREQNVQ-IALETMA 152 (303)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHTCSEEEECCEECTTSCHHHHHHHHHHHHHHHCCSSCSCE-EEEECCC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHHHHHHhCCCCE-EEEecCC
Confidence 3456 67788999999999999999999999862 22222 455666666555544 3664 6666664
No 365
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=34.64 E-value=76 Score=35.16 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=40.8
Q ss_pred HhhHHHHHHHHhhcCCcEEEEecCCC--CC------CHHHHHHHHHHHHHcCCCeEEEccc
Q 010562 436 CVNLARHIANTKAYGANVVVAVNMFA--TD------SKAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 436 ~~NL~kHIeni~~fGvpvVVAIN~F~--tD------T~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
+.|+..+|+-+++.|..|.+++-.+. .| +.+.+-.+.+.+.++|+..+.+|+.
T Consensus 223 l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT 283 (718)
T 3bg3_A 223 LPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDM 283 (718)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECT
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 46999999999999999999998772 23 4566666666667899987777764
No 366
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=34.63 E-value=46 Score=27.78 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=32.7
Q ss_pred HhhHHHHHHHHhh----cCCcEEEEecCCCCCCH-HHHHHHHHHHHHcCCCeEEEccc
Q 010562 436 CVNLARHIANTKA----YGANVVVAVNMFATDSK-AELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 436 ~~NL~kHIeni~~----fGvpvVVAIN~F~tDT~-~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
+.++.+.++.+.+ .++|+++++|+..-... ...+.+.+++++.++. +..++.
T Consensus 103 ~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa 159 (195)
T 1x3s_A 103 FVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEASA 159 (195)
T ss_dssp HHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECCT
T ss_pred HHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEecC
Confidence 3455555666665 47999999999764221 1234456788888875 554443
No 367
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=34.45 E-value=15 Score=31.00 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.7
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-|+++| |.|.||||++.-+++.+.
T Consensus 40 ~~ll~G----~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSG----PPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEEC----STTSSHHHHHHHHHHHHH
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 388888 679999999999998884
No 368
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=34.43 E-value=69 Score=27.66 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=19.0
Q ss_pred HHHHHHhhHHHHHHHHhhcCCcEEEEecCCCC
Q 010562 431 LVEAGCVNLARHIANTKAYGANVVVAVNMFAT 462 (507)
Q Consensus 431 al~~G~~NL~kHIeni~~fGvpvVVAIN~F~t 462 (507)
.+..-+..+..+.+.....++|+++++|+-.-
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 101 TTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred HHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 33333444444333323468999999999744
No 369
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=34.40 E-value=45 Score=33.08 Aligned_cols=52 Identities=21% Similarity=0.183 Sum_probs=33.2
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCC-CHHHH----HHHHHHHHHcCC----CeEEEcccc
Q 010562 438 NLARHIANTKAYGAN-VVVAVNMFATD-SKAEL----NAVRNAAMAAGA----FDAVVCSHH 489 (507)
Q Consensus 438 NL~kHIeni~~fGvp-vVVAIN~F~tD-T~~Ei----~~v~~~~~~~g~----~~~~~~~~w 489 (507)
....|++.++..|+| +||++|+-.-- .++.+ +.+++++++.|. ..++.++.+
T Consensus 106 qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~ 167 (397)
T 1d2e_A 106 QTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSAL 167 (397)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehh
Confidence 345677778889999 68999997643 23322 345667777774 125555544
No 370
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=34.33 E-value=15 Score=41.71 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
|++|+|+||+.+ |+|||+++-.---|
T Consensus 22 p~~~l~v~tG~S----GSGKSsLafdtl~a 47 (916)
T 3pih_A 22 PKNRLVVITGVS----GSGKSSLAMDTIYA 47 (916)
T ss_dssp ETTSEEEEEEST----TSSSHHHHTTTHHH
T ss_pred CCCcEEEEECCC----CCcHHHHHHHHHHH
Confidence 789999999974 99999999875444
No 371
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=34.14 E-value=1e+02 Score=29.40 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcc
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
...+-|+.+++.|+++.+-.--.+..+++|+..+.+++++.|+. +...+
T Consensus 147 ~v~~~i~~l~~~g~~v~i~~vv~~g~n~~ei~~~~~~~~~~g~~-~~~i~ 195 (340)
T 1tv8_A 147 TILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIE-IRFIE 195 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECTTTTGGGHHHHHHHHHHTTCC-EEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEeCCCCHHHHHHHHHHHHhcCCe-EEEEE
Confidence 44444556667788765443345555778999999999999996 44433
No 372
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=34.13 E-value=23 Score=29.48 Aligned_cols=46 Identities=9% Similarity=-0.019 Sum_probs=29.0
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEccc
Q 010562 442 HIANTKAYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 442 HIeni~~fGvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
.+......++|++|++|+..-..+ .+.+...+++++.++. +..++.
T Consensus 107 ~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa 154 (186)
T 2bme_A 107 DARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETSA 154 (186)
T ss_dssp HHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECCT
T ss_pred HHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEecC
Confidence 344444578999999999754322 1224456788888885 554443
No 373
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=34.10 E-value=10 Score=33.20 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=15.3
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHH
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~q 95 (507)
.|.+|| |-|.||||++--|++
T Consensus 4 ~i~l~G----~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTG----GIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEC----STTSCHHHHHHHHHT
T ss_pred EEEEEC----CCCCCHHHHHHHHHH
Confidence 466666 569999998766644
No 374
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=34.01 E-value=25 Score=36.13 Aligned_cols=32 Identities=34% Similarity=0.245 Sum_probs=27.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+-|+|-|||.+ |||||+-=|++.| ...|+++.
T Consensus 107 ~~~vI~VTGTn------GKTTT~~ml~~iL-~~~g~~~~ 138 (498)
T 1e8c_A 107 NLRLVGVTGTN------GKTTTTQLLAQWS-QLLGEISA 138 (498)
T ss_dssp SSEEEEEESSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred cCeEEEEeCCc------ChHHHHHHHHHHH-HhCCCCEE
Confidence 46799999987 9999999999999 47888754
No 375
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=33.90 E-value=31 Score=36.75 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=26.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~ 107 (507)
+.|.+|.+.|-| |.||||+..-|+--+ ..-+.+..+
T Consensus 291 ~~GeVI~LVGpN----GSGKTTLl~~LAgll-~~~~G~V~l 326 (503)
T 2yhs_A 291 KAPFVILMVGVN----GVGKTTTIGKLARQF-EQQGKSVML 326 (503)
T ss_dssp CTTEEEEEECCT----TSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred cCCeEEEEECCC----cccHHHHHHHHHHHh-hhcCCeEEE
Confidence 468899998864 999999998888766 344555443
No 376
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=33.66 E-value=39 Score=34.05 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=27.2
Q ss_pred hhhhc-cCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 59 VLDEL-EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 59 ~l~~~-~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.|+++ ..-+.|.+++|+| |.|.||||.+.-++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G----~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAA----RPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEE----CTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEe----CCCCCHHHHHHHHHHHHH
Confidence 44443 2236799999998 569999999998888773
No 377
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=33.62 E-value=1.1e+02 Score=29.36 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=41.4
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEec-CCC-----CCCHHHHHHHHHHHHHcCCCeEEEccc
Q 010562 433 EAGCVNLARHIANTKAYGANVVVAVN-MFA-----TDSKAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 433 ~~G~~NL~kHIeni~~fGvpvVVAIN-~F~-----tDT~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
+.-++...+.|+.+++.|++|.+.+= .|. .-+.+++..+.+.+.++|+..+.+++.
T Consensus 117 ~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT 178 (298)
T 2cw6_A 117 EESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDT 178 (298)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 44566788889999999999887665 242 224677777777778999987777764
No 378
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=33.57 E-value=57 Score=28.58 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=30.3
Q ss_pred HhhHHHHHHHHhhcCCcEEEEe----cCCC-----CCCHHHH----HHHHHHHHHcCCC
Q 010562 436 CVNLARHIANTKAYGANVVVAV----NMFA-----TDSKAEL----NAVRNAAMAAGAF 481 (507)
Q Consensus 436 ~~NL~kHIeni~~fGvpvVVAI----N~F~-----tDT~~Ei----~~v~~~~~~~g~~ 481 (507)
..||.+-|+.++.-+.+||++- +.++ .+..+.+ +.++++|++.++.
T Consensus 104 ~~~l~~ii~~~~~~~~~iil~~~~P~~~~~~~~~~~~~~~~i~~~n~~i~~~a~~~~v~ 162 (209)
T 4hf7_A 104 FGNIASMAELAKANKIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYAKANKIP 162 (209)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCSCCTTCTTCCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhHHHhccCceEEEEeeeccCcccccccccchhHHHHHHHHHHHHHHHhcCCe
Confidence 4577777888888898887752 3322 2333444 3567888999986
No 379
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=33.47 E-value=38 Score=29.18 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=28.8
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCHH----------HHHHHHHHHHHcCCCeEEEccc
Q 010562 441 RHIANTKAY--GANVVVAVNMFATDSKA----------ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 441 kHIeni~~f--GvpvVVAIN~F~tDT~~----------Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
..++.++++ ++|+||++|+..-..+. ..+.+.+++++.|...+..++.
T Consensus 102 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 102 KWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp THHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred HHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 344555554 89999999996432221 1345567778888633554443
No 380
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=33.44 E-value=24 Score=35.67 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.1
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
-+.|++|++.| |-|.||||++--|+..+
T Consensus 166 i~~~~~i~l~G----~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKG----PIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEC----CCCCCHHHHHHHHHhhc
Confidence 36799999998 77999999988887544
No 381
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=33.08 E-value=14 Score=33.52 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++..|.+.|. -|.||||+.--|++.|+
T Consensus 26 ~~~~i~l~G~----~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGP----PGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECC----TTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 3678999884 59999999988888774
No 382
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=32.94 E-value=40 Score=28.92 Aligned_cols=87 Identities=7% Similarity=0.020 Sum_probs=47.0
Q ss_pred hcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhh
Q 010562 359 LVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVN 438 (507)
Q Consensus 359 Lag~~dyVVTEAGFGaDlGaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~N 438 (507)
+....||||-+.+-+.+-.....+ +. -|.+|+|++-.. .. .++..
T Consensus 72 l~~~yD~viiD~~~~~~~~~~~~l----~~----ad~viiv~~~~~-------------------------~~--~~~~~ 116 (206)
T 4dzz_A 72 DLADYDFAIVDGAGSLSVITSAAV----MV----SDLVIIPVTPSP-------------------------LD--FSAAG 116 (206)
T ss_dssp HTTTSSEEEEECCSSSSHHHHHHH----HH----CSEEEEEECSCT-------------------------TT--HHHHH
T ss_pred hcCCCCEEEEECCCCCCHHHHHHH----HH----CCEEEEEecCCH-------------------------HH--HHHHH
Confidence 334459999998766533222222 11 466777773210 11 12334
Q ss_pred HHHHHHHHh--hcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 439 LARHIANTK--AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 439 L~kHIeni~--~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
+.+.++.++ .-++++-|.+|++...+.. .+.+++++++.|..
T Consensus 117 ~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~-~~~~~~~l~~~~~~ 160 (206)
T 4dzz_A 117 SVVTVLEAQAYSRKVEARFLITRKIEMATM-LNVLKESIKDTGVK 160 (206)
T ss_dssp HHHHHHTTSCGGGCCEEEEEECSBCTTEEE-EHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCcEEEEEeccCCCchH-HHHHHHHHHHcCCc
Confidence 444444444 2357889999999876541 12345556666654
No 383
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=32.94 E-value=14 Score=42.38 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~ 94 (507)
|.+|+|+||+++ |+|||+++-.--
T Consensus 44 P~~~lvv~tG~S----GSGKSSLafdtl 67 (993)
T 2ygr_A 44 PRDALIVFTGLS----GSGKSSLAFDTI 67 (993)
T ss_dssp ESSSEEEEEEST----TSSHHHHHTTTH
T ss_pred cCCCEEEEECCC----CCcHHHHHHHHH
Confidence 789999999975 999999988754
No 384
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=32.90 E-value=15 Score=34.80 Aligned_cols=26 Identities=50% Similarity=0.825 Sum_probs=20.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
..+|.+++ |.|.||||++--|++.|+
T Consensus 9 ~~~i~i~G----~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDG----PAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEEC----CTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 34677776 679999999988887773
No 385
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=32.78 E-value=28 Score=28.66 Aligned_cols=37 Identities=11% Similarity=-0.032 Sum_probs=22.8
Q ss_pred CCc-EEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 450 GAN-VVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 450 Gvp-vVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
+.| +|++.|+..-..+.+ .+.+.+++++.|+. +..++
T Consensus 114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 153 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVS 153 (178)
T ss_dssp CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEEC
T ss_pred CCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEe
Confidence 677 789999865432111 24456777888885 54444
No 386
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=32.40 E-value=49 Score=32.93 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=29.1
Q ss_pred hHHHHHHHHhhcCCcE-EEEec-CCCCCCHHHHH----HHHHHHHHcC
Q 010562 438 NLARHIANTKAYGANV-VVAVN-MFATDSKAELN----AVRNAAMAAG 479 (507)
Q Consensus 438 NL~kHIeni~~fGvpv-VVAIN-~F~tDT~~Ei~----~v~~~~~~~g 479 (507)
...+|+..++.+|+|. ||++| +-.- .++.++ .+++++++.+
T Consensus 99 qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~ 145 (370)
T 2elf_A 99 HTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV 145 (370)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST
T ss_pred HHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC
Confidence 5677888899999999 99999 8776 555444 3444444443
No 387
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=32.19 E-value=89 Score=26.82 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=28.4
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEccc
Q 010562 441 RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 441 kHIeni~~f--GvpvVVAIN~F~tDT~~E--------------i~~v~~~~~~~g~~~~~~~~~ 488 (507)
+.++.++++ ++|++|++|+..-..+.+ .+...+++++.+...+..++.
T Consensus 118 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (201)
T 2gco_A 118 KWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181 (201)
T ss_dssp THHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred HHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence 334444544 899999999975433211 124566777778733544443
No 388
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=32.17 E-value=28 Score=35.86 Aligned_cols=30 Identities=30% Similarity=0.207 Sum_probs=25.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
.+.|-||+.+ ||||||-=|++.| ...|.+.
T Consensus 122 ~~~IaVTGTn------GKTTTt~ml~~iL-~~~g~~~ 151 (494)
T 4hv4_A 122 RHGIAVAGTH------GKTTTTAMLSSIY-AEAGLDP 151 (494)
T ss_dssp SEEEEEECSS------SHHHHHHHHHHHH-HHTTCCC
T ss_pred CCEEEEecCC------ChHHHHHHHHHHH-HhcCCCC
Confidence 3589999986 9999999999999 5788763
No 389
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=32.14 E-value=77 Score=27.06 Aligned_cols=58 Identities=7% Similarity=-0.109 Sum_probs=33.0
Q ss_pred HhhHHHHHHHHhh----cCCcEEEEecCCCC----CCHHHHHHHHHHHHHcCCCeEEEcccccccCcC
Q 010562 436 CVNLARHIANTKA----YGANVVVAVNMFAT----DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 436 ~~NL~kHIeni~~----fGvpvVVAIN~F~t----DT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
+.++...++.+++ .++|+|++.|+..- +..-..+.+.+++++.+...+..++. +-|+|
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa--~~~~g 166 (184)
T 3ihw_A 101 FQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA--TYGLN 166 (184)
T ss_dssp HHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT--TTTBT
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC--CCCCC
Confidence 3444445555554 47999999999653 11122345667888887323444433 33444
No 390
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=32.13 E-value=1.1e+02 Score=27.33 Aligned_cols=52 Identities=8% Similarity=0.029 Sum_probs=36.5
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCC--CCC----HHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 437 VNLARHIANTKAYGANVVVAVNMFA--TDS----KAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 437 ~NL~kHIeni~~fGvpvVVAIN~F~--tDT----~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
..+++.|+..+.+|.+.||..=-+. .+- .+-+..+.+.|++.|+. +++-++.
T Consensus 85 ~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~~ 142 (272)
T 2q02_A 85 KKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQ-GLVEPLG 142 (272)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCE-EEECCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCCE-EEEEecC
Confidence 5789999999999999998732221 111 44456666777788996 7777774
No 391
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=31.95 E-value=13 Score=32.66 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=17.2
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|++|| |-|.||||++--|++.+
T Consensus 3 I~l~G----~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMG----LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEC----STTSSHHHHHHHHHHHS
T ss_pred EEEEC----CCCCCHHHHHHHHHHHh
Confidence 66666 45999999988887666
No 392
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3
Probab=31.60 E-value=82 Score=31.68 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=41.7
Q ss_pred HHHHHHHhhcCCcEE-EEec----------CCCCC-CHHHHHHHHHHHHHcCCCeEEEcccccccCc
Q 010562 440 ARHIANTKAYGANVV-VAVN----------MFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 440 ~kHIeni~~fGvpvV-VAIN----------~F~tD-T~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~ 494 (507)
+..++.|++.|+.+| +.|. .|..+ .-+.++.+.++|++.|.. +++.-|...|+.
T Consensus 76 e~d~~~i~~~G~N~VRipi~~~~~~~~~~~py~~~~~l~~ld~vv~~a~~~Gi~-VilDlH~~pG~q 141 (408)
T 1h4p_A 76 EQDFANIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESYLDQAIGWARNNSLK-VWVDLHGAAGSQ 141 (408)
T ss_dssp HHHHHHHHHTTCCEEEEEEEGGGTCCCTTCCCCCSSHHHHHHHHHHHHHHTTCE-EEEEEEECTTCS
T ss_pred HHHHHHHHHCCCCEEEccCCHHHcccCCCCCCccccHHHHHHHHHHHHHHCCCE-EEEECCCCCCcc
Confidence 677889999999998 4453 23333 557788999999999996 899888877654
No 393
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=31.50 E-value=35 Score=35.72 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=27.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
...+|+++|. -|.||||++.-|++.|+ ..+.++
T Consensus 34 ~~~lIvlvGl----pGSGKSTia~~La~~L~-~~~~d~ 66 (520)
T 2axn_A 34 SPTVIVMVGL----PARGKTYISKKLTRYLN-WIGVPT 66 (520)
T ss_dssp CCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHHh-hcCCCe
Confidence 3468999997 59999999999999995 777765
No 394
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=31.42 E-value=28 Score=36.20 Aligned_cols=32 Identities=22% Similarity=0.125 Sum_probs=27.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
+-++|-|||.| |||||+-=|++.| ...|+++.
T Consensus 145 ~~~vI~VTGTn------GKTTT~~ml~~iL-~~~G~~~g 176 (535)
T 2wtz_A 145 RLTVIGITGTS------GKTTTTYLVEAGL-RAAGRVAG 176 (535)
T ss_dssp SSEEEEEESSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred cceEEEeeCCC------ChHHHHHHHHHHH-HHCCCCEE
Confidence 45799999987 9999999999999 47788754
No 395
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=31.36 E-value=29 Score=35.40 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=26.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~ 106 (507)
-+.|-|||.+ ||||||-=|++.| ...|.++.
T Consensus 114 ~~vI~VTGTn------GKTTTt~ml~~iL-~~~G~~~~ 144 (469)
T 1j6u_A 114 KEEFAVTGTD------GKTTTTAMVAHVL-KHLRKSPT 144 (469)
T ss_dssp CCEEEEECSS------SHHHHHHHHHHHH-HHTTCCCE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HHcCCCce
Confidence 4699999987 9999999999999 57898753
No 396
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=31.23 E-value=30 Score=35.27 Aligned_cols=29 Identities=21% Similarity=0.111 Sum_probs=24.6
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-+.|.+++|+| +.|.||||.+.-++..+.
T Consensus 239 l~~G~l~li~G----~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 239 ARGGEVIMVTS----GSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp CCTTCEEEEEE----SSCHHHHHHHHHHHHHHT
T ss_pred cCCCeEEEEee----cCCCCchHHHHHHHHHHH
Confidence 46799999999 469999999998887773
No 397
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=31.22 E-value=28 Score=32.55 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=26.2
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEcc
Q 010562 443 IANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 443 Ieni~~fGvpvVVAIN~F~tDT~~Ei-~~v~~~~~~~g~~~~~~~~ 487 (507)
...+..+++|+|+++|+..--...++ ..+.++++..|++ ++.++
T Consensus 103 ~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S 147 (256)
T 3iby_A 103 TSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQ 147 (256)
T ss_dssp HHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEECB
T ss_pred HHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEEEE
Confidence 34466789999999998632111111 1234566778886 55444
No 398
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=31.16 E-value=44 Score=35.22 Aligned_cols=22 Identities=41% Similarity=0.395 Sum_probs=17.6
Q ss_pred HHHHHHhhcCCcEEEEecCCCC
Q 010562 441 RHIANTKAYGANVVVAVNMFAT 462 (507)
Q Consensus 441 kHIeni~~fGvpvVVAIN~F~t 462 (507)
.|++.++..++|+||++|+-.-
T Consensus 94 e~l~~~~~~~vPiIVviNKiDl 115 (501)
T 1zo1_I 94 EAIQHAKAAQVPVVVAVNKIDK 115 (501)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS
T ss_pred HHHHHHHhcCceEEEEEEeccc
Confidence 3566677899999999998754
No 399
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=31.14 E-value=16 Score=41.87 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=20.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~ 94 (507)
|.+|+|+||+.+ |+|||+++-.--
T Consensus 42 P~~~lvv~tG~S----GSGKSSLafdtl 65 (972)
T 2r6f_A 42 PRGKLVVLTGLS----GSGKSSLAFDTI 65 (972)
T ss_dssp ETTSEEEEEEST----TSSHHHHHTTTH
T ss_pred cCCcEEEEECCC----CCCHHHHHHHHH
Confidence 789999999975 999999987753
No 400
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=31.01 E-value=17 Score=34.87 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=12.5
Q ss_pred CceeEEccc-ccchh
Q 010562 330 GTPVLVHAG-PFANI 343 (507)
Q Consensus 330 gtPa~VHgG-PFANI 343 (507)
..|++|||| ||+|.
T Consensus 42 ~~~vlVhGGG~~~~~ 56 (269)
T 3ll9_A 42 SSLMIVHGAGSFGHP 56 (269)
T ss_dssp SSEEEEECCGGGTHH
T ss_pred CCEEEEECCcHHHHH
Confidence 679999987 99987
No 401
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=30.99 E-value=1.4e+02 Score=28.70 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEccccc
Q 010562 464 SKAELNAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 464 T~~Ei~~v~~~~~~~g~~~~~~~~~wa 490 (507)
++++++.|+++|++.|+. +++-+++.
T Consensus 221 ~~~~l~~l~~l~~~~~il-lI~DEv~~ 246 (434)
T 3l44_A 221 KPGFLEKVNELVHEAGAL-VIYDEVIT 246 (434)
T ss_dssp CTTHHHHHHHHHHTTTCE-EEEECTTT
T ss_pred CHHHHHHHHHHHHHcCCE-EEEecccc
Confidence 889999999999999996 77777765
No 402
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=30.97 E-value=42 Score=34.33 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=30.1
Q ss_pred hhhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcE
Q 010562 58 SVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (507)
Q Consensus 58 ~~l~~~~-~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a 105 (507)
.-|+++- .=+.|.+|+|+| +-|.||||.+.-++.... .-|+++
T Consensus 185 ~~LD~~lgGl~~G~liiIaG----~pG~GKTtlal~ia~~~a-~~g~~v 228 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAA----RPSMGKTAFALKQAKNMS-DNDDVV 228 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEE----CSSSSHHHHHHHHHHHHH-HTTCEE
T ss_pred HHHHhhcCCCCCCcEEEEEe----CCCCChHHHHHHHHHHHH-HcCCEE
Confidence 3455432 236799999999 469999999998888774 335443
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=30.59 E-value=17 Score=32.22 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.9
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|+++|. -|.||||.+--|++.|
T Consensus 3 I~l~G~----~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGA----PVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEES----TTSSHHHHHHHHHHHH
T ss_pred EEEECC----CCCCHHHHHHHHHHHh
Confidence 677774 5999999998888766
No 404
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=30.55 E-value=18 Score=35.74 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=21.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|+.|+|+| |-|.||||+.--|..-+
T Consensus 173 ~~G~~i~ivG----~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAG----ETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEE----SSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEEC----CCCCCHHHHHHHHHhcC
Confidence 4588999998 34999999987776554
No 405
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=30.19 E-value=50 Score=28.63 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=30.4
Q ss_pred HHHHHHhhhhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCC
Q 010562 156 LAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLT 212 (507)
Q Consensus 156 laA~iDn~i~h~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt 212 (507)
|-+++++||.|.. ..++...|.|+-.||....++.++
T Consensus 40 Lr~Al~~~i~~~~--------------------piP~Di~raL~~vGI~p~id~~~S 76 (101)
T 2lf6_A 40 LRTSLGRYIMSLE--------------------PLPPDLRRALESVGINPFIPEELS 76 (101)
T ss_dssp HHHHHHHHHSSSC--------------------CCCHHHHHHHHHHTCCSCCCTTTT
T ss_pred HHHHHHHHHHhcC--------------------CCCHHHHHHHHcCCCCCCCcchHH
Confidence 6788999999874 356888899999999988877654
No 406
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=30.07 E-value=56 Score=27.71 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=32.0
Q ss_pred hHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcccccccCcC
Q 010562 438 NLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 438 NL~kHIeni~~---fGvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
++...++.+++ -++|+|+++|+-.-..+ ...+..++++++.|+. +..++ ++-|+|
T Consensus 113 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~g 172 (191)
T 3dz8_A 113 AVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEAS--AKENIS 172 (191)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBS
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEE--CCCCCC
Confidence 33344444444 58999999999764221 2234556778888885 54444 333444
No 407
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=30.05 E-value=1.5e+02 Score=27.78 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecCCC-CCCHHHHH-------HHHHHHHHcCCCe-EEEcccc
Q 010562 433 EAGCVNLARHIANTKAYGANVVVAVNMFA-TDSKAELN-------AVRNAAMAAGAFD-AVVCSHH 489 (507)
Q Consensus 433 ~~G~~NL~kHIeni~~fGvpvVVAIN~F~-tDT~~Ei~-------~v~~~~~~~g~~~-~~~~~~w 489 (507)
++..+.+++.|+..+.+|.+.||+- -.+ .+++++++ .+.+.|++.|+.- ..+-+|+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~En~~ 168 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQP-MMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGYHNHN 168 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC-SCCCCCSHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcceEEEccCc
Confidence 4557789999999999999999873 222 24555543 4556777889940 4555554
No 408
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=30.03 E-value=59 Score=26.57 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=29.3
Q ss_pred hHHHHHHHHhhc--CCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcc
Q 010562 438 NLARHIANTKAY--GANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 438 NL~kHIeni~~f--GvpvVVAIN~F~tDT~--~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
++.+.++.+++. ++|+||++|+..-..+ .+.+...+++.+.|+. +..++
T Consensus 99 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S 151 (181)
T 3tw8_B 99 NVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETS 151 (181)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECB
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEE
Confidence 333344444433 6999999999753322 1234566788888886 44444
No 409
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=30.02 E-value=36 Score=29.91 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=24.9
Q ss_pred hhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcc
Q 010562 447 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 447 ~~fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~g~~~~~~~~ 487 (507)
...++|+||+.|+-.-..+.+ .+.+++++++.+.. +..++
T Consensus 128 ~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S 169 (201)
T 2ew1_A 128 ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETS 169 (201)
T ss_dssp SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECC
T ss_pred cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEe
Confidence 345899999999965322111 23455677778886 54444
No 410
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=30.01 E-value=64 Score=27.93 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=31.4
Q ss_pred hhHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEccc
Q 010562 437 VNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 437 ~NL~kHIeni~~---fGvpvVVAIN~F~tDT~~--Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
.++.+.++.+++ .++|+||++|+..-..+. ..+.+++++++.|+..+..++.
T Consensus 118 ~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 118 LSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeC
Confidence 344444444443 579999999996543211 2345677888888832444443
No 411
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=30.00 E-value=47 Score=33.21 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=29.8
Q ss_pred hhhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 58 SVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 58 ~~l~~~~-~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
..|+++- .-..|.+|+|+| +-|.||||.+.-++..+. .-|.+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG----~pG~GKTt~al~ia~~~a-~~g~~ 76 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGA----RPSMGKTSLMMNMVLSAL-NDDRG 76 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEE----CTTSCHHHHHHHHHHHHH-HTTCE
T ss_pred hHHHHHhcCCCCCcEEEEEe----CCCCCHHHHHHHHHHHHH-HcCCe
Confidence 3455432 235799999999 468999999999888873 43443
No 412
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=30.00 E-value=17 Score=32.97 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=19.9
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.+|.+++ |.|.||||++--|++.|+
T Consensus 7 ~iI~i~g----~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGR----EFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEE----CTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeC----CCCCCHHHHHHHHHHHhC
Confidence 3566665 689999999999988774
No 413
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=29.95 E-value=1.3e+02 Score=29.26 Aligned_cols=57 Identities=16% Similarity=0.051 Sum_probs=39.8
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 433 EAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 433 ~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
+.-++.+.++|+-+++.|..|.+..=-...-+++.+..+.+.+.++|+..+.+++.-
T Consensus 117 ~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~ 173 (293)
T 3ewb_X 117 AEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINIPDTV 173 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 445667888999999999998876642222335555566666778999877777643
No 414
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=29.86 E-value=20 Score=34.55 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=23.3
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCCCC
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSlGP 116 (507)
+++||| |.|.||||+---|.. + .-|++ +++=+|..|=
T Consensus 6 v~~i~G----~~GaGKTTll~~l~~-~--~~~~~--~aVi~~d~G~ 42 (318)
T 1nij_A 6 VTLLTG----FLGAGKTTLLRHILN-E--QHGYK--IAVIENEFGE 42 (318)
T ss_dssp EEEEEE----SSSSSCHHHHHHHHH-S--CCCCC--EEEECSSCCS
T ss_pred EEEEEe----cCCCCHHHHHHHHHh-h--cCCCc--EEEEEecCcc
Confidence 667777 679999998655432 2 23555 3344678774
No 415
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=29.85 E-value=27 Score=32.88 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.5
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|+++| |.|.||||+.--+++.+
T Consensus 46 ~~li~G----~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLG----RPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHH
Confidence 899988 67999999999888877
No 416
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=29.83 E-value=1.3e+02 Score=28.16 Aligned_cols=45 Identities=20% Similarity=0.104 Sum_probs=32.2
Q ss_pred CCcEEEEecCC-CC---CCHHHHHHHHHHHHHcCCCeEEEcccccccCcC
Q 010562 450 GANVVVAVNMF-AT---DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 450 GvpvVVAIN~F-~t---DT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
+..+|+..|-. ++ =+.++++.|.++|++.|+. +++-+.|+.++-+
T Consensus 179 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~-li~Dea~~~~~~~ 227 (407)
T 3nra_A 179 GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGAT-VIADQLYSRLRYA 227 (407)
T ss_dssp TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE-EEEECTTTTSBCT
T ss_pred CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCE-EEEEccccccccC
Confidence 45556555542 22 2578999999999999996 7888888876544
No 417
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=29.72 E-value=53 Score=27.61 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=23.8
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcc
Q 010562 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT-~~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
.++|+||++|+-.-.. +...+...+++++.++. +..++
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S 151 (199)
T 2gf0_A 113 EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMETS 151 (199)
T ss_dssp GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEECB
T ss_pred CCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEEe
Confidence 3899999999975432 11234455677777875 44443
No 418
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=29.68 E-value=40 Score=33.70 Aligned_cols=61 Identities=23% Similarity=0.279 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCC-----CC-HHHHHHHHHHHHHcCCCeEEEcccccccCcCcccCCCCC
Q 010562 439 LARHIANTKAYGANVVVAVNMFAT-----DS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVSDLPPL 503 (507)
Q Consensus 439 L~kHIeni~~fGvpvVVAIN~F~t-----DT-~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~~~~~~~ 503 (507)
+++=++.++++|..|++.=|.+.. -| ++-.+-+.+....-.++ +++| +.||.|+...||-|
T Consensus 27 ~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~-aI~~---~rGG~g~~rlLp~L 93 (346)
T 4eys_A 27 VDLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSID-MILC---AIGGDDTYRLLPYL 93 (346)
T ss_dssp HHHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCC-EEEE---CCCCSCGGGGHHHH
T ss_pred HHHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCC-EEEE---cccccCHHHHHHHh
Confidence 334455667799999997666543 23 44455566666666775 7777 57999999999866
No 419
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=29.67 E-value=1e+02 Score=30.55 Aligned_cols=53 Identities=25% Similarity=0.277 Sum_probs=43.2
Q ss_pred HHHHHHHhhcCCcEEE-Eec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccC
Q 010562 440 ARHIANTKAYGANVVV-AVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (507)
Q Consensus 440 ~kHIeni~~fGvpvVV-AIN---~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG 493 (507)
.+.|+.+++.|.++|= .++ .|..|.-+.++.+.++|.+.|.. +++.-|...|+
T Consensus 57 ~~~i~~lk~~G~N~VRip~~~~~~~~~~~l~~ld~~v~~a~~~Giy-VIlDlH~~~g~ 113 (345)
T 3jug_A 57 STAIPAIAEQGANTIRIVLSDGGQWEKDDIDTVREVIELAEQNKMV-AVVEVHDATGR 113 (345)
T ss_dssp HHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTC
T ss_pred HHHHHHHHHcCCCEEEEEecCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEeccCCCC
Confidence 4689999999999884 443 56778889999999999999996 88877777654
No 420
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=29.67 E-value=19 Score=31.54 Aligned_cols=50 Identities=8% Similarity=-0.110 Sum_probs=30.5
Q ss_pred hhHHHHHHHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcc
Q 010562 437 VNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 437 ~NL~kHIeni~~f--GvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
.++...++.+.++ ++|+|+++|+..-..+...+...+++++.++. +..++
T Consensus 104 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~S 155 (221)
T 3gj0_A 104 KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ-YYDIS 155 (221)
T ss_dssp HTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCE-EEECB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCE-EEEEe
Confidence 3444445555543 89999999997643333333455677777875 44444
No 421
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=29.63 E-value=19 Score=32.16 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=21.5
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
+.|.|++ |.|+||||+.--|...+. .-|.+
T Consensus 3 ~~v~IvG----~SGsGKSTL~~~L~~~~~-~~g~~ 32 (171)
T 2f1r_A 3 LILSIVG----TSDSGKTTLITRMMPILR-ERGLR 32 (171)
T ss_dssp CEEEEEE----SCHHHHHHHHHHHHHHHH-HTTCC
T ss_pred eEEEEEC----CCCCCHHHHHHHHHHHhh-hcCCc
Confidence 3566666 569999999999988873 44443
No 422
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=29.61 E-value=43 Score=27.86 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHH----HHHHHHHHHHcCCCeEEEcc
Q 010562 443 IANTKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 443 Ieni~~fGvpvVVAIN~F~tDT~~E----i~~v~~~~~~~g~~~~~~~~ 487 (507)
++.++.+++|++|++|+..--++++ .+.+++++...+...+..++
T Consensus 126 ~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (195)
T 3pqc_A 126 VEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTS 174 (195)
T ss_dssp HHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECC
T ss_pred HHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence 3445566999999999976433333 34556666654532244443
No 423
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=29.58 E-value=63 Score=27.65 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=24.8
Q ss_pred HHHhhcCCcEEEEecCCCCCCHH--------HHHHHHHHHHHcCCCeEEEccc
Q 010562 444 ANTKAYGANVVVAVNMFATDSKA--------ELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 444 eni~~fGvpvVVAIN~F~tDT~~--------Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
+.....++|+||++|+..-..+. ..+...+++++.|+. +..++.
T Consensus 127 ~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~SA 178 (199)
T 2p5s_A 127 EDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSA 178 (199)
T ss_dssp HHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECCT
T ss_pred HHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEeeC
Confidence 33334589999999996532111 123456778888885 554443
No 424
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=29.57 E-value=89 Score=30.82 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=42.3
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccc
Q 010562 437 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 437 ~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
++...+|+.++++|+.+++.+=-.+.-+++.+..+.+.+.+.|+..+.+++.
T Consensus 120 ~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT 171 (345)
T 1nvm_A 120 DVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADS 171 (345)
T ss_dssp GGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECT
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4678899999999999998875555566888888888889999986666654
No 425
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=29.28 E-value=2e+02 Score=23.11 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=47.3
Q ss_pred HHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCcCcc
Q 010562 432 VEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAV 497 (507)
Q Consensus 432 l~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~ 497 (507)
++....-|.+-|.....-|++.|..|==.-+ -.=-..|.+|.++.......-.....+||.|+.
T Consensus 14 ~~eA~~~l~~fl~~a~~~g~~~v~IIHGkG~--GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat 77 (83)
T 2zqe_A 14 VAEALLEVDQALEEARALGLSTLRLLHGKGT--GALRQAIREALRRDKRVESFADAPPGEGGHGVT 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCSTT--SHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCc--hHHHHHHHHHHhcCCceeEEEEcCcccCCCEEE
Confidence 3455678899999999999999999976544 456677888888754432344556788999985
No 426
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=29.21 E-value=19 Score=36.49 Aligned_cols=112 Identities=14% Similarity=0.202 Sum_probs=65.1
Q ss_pred CCCCceeeccccchhhHHHHhhhccCcccceeecCceeEEcccccchhcccCchHHHHHHHHHhcCCCCeEEeecc----
Q 010562 296 KAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAG---- 371 (507)
Q Consensus 296 ~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHG~nSviAtk~ALkLag~~dyVVTEAG---- 371 (507)
..|++-+...+. ||+.++ +.+++.=.+||| +.||.+-..+.++-...++..|.-|.-.
T Consensus 14 ~~~~~~~~C~~~--Ga~~~~----------~~I~d~~~i~hg------p~GC~~~~~~~~~~~~f~e~~~~~t~l~E~di 75 (460)
T 2xdq_A 14 ETGNYHTFCPIS--CVAWLY----------QKIEDSFFLVIG------TKTCGYFLQNAMGVMIFAEPRYAMAELEEGDI 75 (460)
T ss_dssp CCCCCCCCCGGG--HHHHHH----------HHSTTEEEEEEE------CHHHHHHHHHHTGGGGGSCCSEEEEECCHHHH
T ss_pred cCCCCCCCCcHH--HHHHHH----------cCCCCcEEEEEC------CCcccchhhhhhhhhcccCCccccccCchhhh
Confidence 456666666554 444433 234555689999 5789887765443333444566666532
Q ss_pred ---ccccccccccccccccc--CCCCcceEEEEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhhHHHHHHHH
Q 010562 372 ---FGADIGAEKFMNIKCRY--SGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANT 446 (507)
Q Consensus 372 ---FGaDlGaEKF~dIKCR~--sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~NL~kHIeni 446 (507)
||. -||..+. |+. .-.+|++++|++|.- .++..+|++++-+-+.
T Consensus 76 v~~~Gg---~ekL~~~-i~~~~~~~~P~~I~v~~TC~------------------~~iIGdDi~~v~~~~~--------- 124 (460)
T 2xdq_A 76 SAQLND---YEELKRL-CLEIKRDRNPSVIVWIGTCT------------------TEIIKMDLEGLAPKLE--------- 124 (460)
T ss_dssp TTSSCH---HHHHHHH-HHHHHHHHCCSEEEEEECHH------------------HHHTTCCHHHHHHHHH---------
T ss_pred hhhcCC---hHHHHHH-HHHHHHhcCCCEEEEECCCH------------------HHHHhhCHHHHHHHHh---------
Confidence 553 3554331 221 124799999998764 4556677777655442
Q ss_pred hhcCCcEEEE
Q 010562 447 KAYGANVVVA 456 (507)
Q Consensus 447 ~~fGvpvVVA 456 (507)
+++|+|||.+
T Consensus 125 ~~~~ipVi~v 134 (460)
T 2xdq_A 125 AEIGIPIVVA 134 (460)
T ss_dssp HHHSSCEEEE
T ss_pred hccCCcEEEE
Confidence 1358887764
No 427
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=29.19 E-value=42 Score=33.08 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccc
Q 010562 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 492 (507)
Q Consensus 440 ~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~G 492 (507)
..|++.+.+.|+|+|+.-=-| ++++++.|.++|++ .. ++.+..|+-|
T Consensus 102 ~~~~~~~l~~Gv~vViGTTG~---~~e~~~~L~~aa~~--~~-~~~a~N~SiG 148 (288)
T 3ijp_A 102 VLYANYAAQKSLIHIIGTTGF---SKTEEAQIADFAKY--TT-IVKSGNMSLG 148 (288)
T ss_dssp HHHHHHHHHHTCEEEECCCCC---CHHHHHHHHHHHTT--SE-EEECSCCCHH
T ss_pred HHHHHHHHHcCCCEEEECCCC---CHHHHHHHHHHhCc--CC-EEEECCCcHH
Confidence 345666778899999976555 47788999999986 33 6788888765
No 428
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=29.05 E-value=59 Score=34.15 Aligned_cols=44 Identities=7% Similarity=0.070 Sum_probs=30.6
Q ss_pred hHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
....|++.++.+++|++|++|+-.-......+.+.++.+..+..
T Consensus 122 ~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~ 165 (529)
T 2h5e_A 122 RTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIG 165 (529)
T ss_dssp HHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence 34667778888999999999997654433334555555666764
No 429
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=29.02 E-value=62 Score=29.14 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=38.5
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 437 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 437 ~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
+.+++.|+..+.+|.+.||.- +. .+.++.+.+.|++.|+. +.+-+|+
T Consensus 91 ~~~~~~i~~A~~lGa~~v~~~---~~--~~~~~~l~~~a~~~gv~-l~~En~~ 137 (262)
T 3p6l_A 91 SDWEKMFKFAKAMDLEFITCE---PA--LSDWDLVEKLSKQYNIK-ISVHNHP 137 (262)
T ss_dssp THHHHHHHHHHHTTCSEEEEC---CC--GGGHHHHHHHHHHHTCE-EEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEec---CC--HHHHHHHHHHHHHhCCE-EEEEeCC
Confidence 368889999999999999973 32 46788899999999996 7787774
No 430
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=29.01 E-value=28 Score=28.57 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=20.3
Q ss_pred HHHccCCCCCHHHHHHHcCCCCcch
Q 010562 21 DIANSVEPLHISEIAQELNLKPNHY 45 (507)
Q Consensus 21 eIa~~~~~~~I~~iA~~lGi~~~~l 45 (507)
+--.+.+..+++++|.++|+.-++.
T Consensus 14 ~yIk~~Kvv~LedLA~~F~l~t~~~ 38 (72)
T 1wi9_A 14 NYIKKSKVVLLEDLAFQMGLRTQDA 38 (72)
T ss_dssp HHHHHCSEECHHHHHHHHCSCHHHH
T ss_pred HHHHHcCeeeHHHHHHHhCCChHHH
Confidence 4445677889999999999998765
No 431
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=28.84 E-value=1e+02 Score=32.28 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=37.8
Q ss_pred hhHHHHHHHHhhcCCcEEEEecCCCCCC---HHHHHHHHHHHHHcCCCeEEEccc
Q 010562 437 VNLARHIANTKAYGANVVVAVNMFATDS---KAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 437 ~NL~kHIeni~~fGvpvVVAIN~F~tDT---~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
.|+...|+-+++.|..|.+.+ .|..++ .+.+-.+.+.+.++|+..+.+|+.
T Consensus 127 ~ni~~~i~~ak~~G~~v~~~i-~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT 180 (464)
T 2nx9_A 127 RNMQQALQAVKKMGAHAQGTL-CYTTSPVHNLQTWVDVAQQLAELGVDSIALKDM 180 (464)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-ECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEET
T ss_pred HHHHHHHHHHHHCCCEEEEEE-EeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 589999999999999999888 554443 444444455556799987777764
No 432
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=28.82 E-value=57 Score=30.53 Aligned_cols=63 Identities=17% Similarity=0.036 Sum_probs=41.6
Q ss_pred cccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cC-----CCC--CCHHH-------HHHHHHHHHHcCCCeEEEcc
Q 010562 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAV-NM-----FAT--DSKAE-------LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 425 ~~enl~al~~G~~NL~kHIeni~~fGvpvVVAI-N~-----F~t--DT~~E-------i~~v~~~~~~~g~~~~~~~~ 487 (507)
..+|.+.-++.+..+++.|+-.+.+|.++||.- .. |.. ++++. +..+.+.|++.|+..+++-+
T Consensus 102 ~~~d~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~lE~ 179 (316)
T 3qxb_A 102 LAPTLELQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGLSMLYVEP 179 (316)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 356777888999999999999999999999742 11 111 12222 34455567788985144433
No 433
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=28.77 E-value=20 Score=32.34 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=18.9
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+|+++|+ -|.||||.+--|++.|
T Consensus 2 ~I~l~G~----~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGP----NGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECC----TTSCHHHHHHHHHHHH
T ss_pred EEEEECC----CCCCHHHHHHHHHHHh
Confidence 5777774 5999999998888777
No 434
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=28.56 E-value=35 Score=34.72 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=25.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
-+.|-|||.+ ||||||-=|++.| ...|.+
T Consensus 118 ~~vI~VTGTn------GKTTTt~ml~~iL-~~~G~~ 146 (475)
T 1p3d_A 118 RHGIAVAGTH------GKTTTTAMISMIY-TQAKLD 146 (475)
T ss_dssp SEEEEEESSS------CHHHHHHHHHHHH-HHTTCC
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhCCCC
Confidence 3789999987 9999999999999 477876
No 435
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1
Probab=28.40 E-value=1.1e+02 Score=29.37 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=36.3
Q ss_pred hHHHHHHHHhhcCCcEEEEec-CCCCCCHHHHHHHHHHHHHcCCCeEEEcccccc-cCc
Q 010562 438 NLARHIANTKAYGANVVVAVN-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAH-GGK 494 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVAIN-~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~-GG~ 494 (507)
++.+=.+-...+|+|+=|.+- -+. |++|+....+.|.++|+..+-.|+.|.. ||.
T Consensus 121 ei~~v~~a~~~~g~~lKvIlEt~~L--~~e~i~~a~ria~eaGADfVKTsTG~~~~~gA 177 (234)
T 1n7k_A 121 EVSGIVKLAKSYGAVVKVILEAPLW--DDKTLSLLVDSSRRAGADIVKTSTGVYTKGGD 177 (234)
T ss_dssp HHHHHHHHHHHTTCEEEEECCGGGS--CHHHHHHHHHHHHHTTCSEEESCCSSSCCCCS
T ss_pred HHHHHHHHHhhcCCeEEEEEeccCC--CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCC
Confidence 444434445568898744443 344 4789999999999999974445556765 543
No 436
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=27.97 E-value=25 Score=32.68 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=17.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTV 91 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttI 91 (507)
+.|..+.+.| |-|.||||+--
T Consensus 29 ~~Ge~~~iiG----~nGsGKSTLl~ 49 (235)
T 3tif_A 29 KEGEFVSIMG----PSGSGKSTMLN 49 (235)
T ss_dssp CTTCEEEEEC----STTSSHHHHHH
T ss_pred cCCCEEEEEC----CCCCcHHHHHH
Confidence 4689999988 78999999743
No 437
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=27.83 E-value=34 Score=27.61 Aligned_cols=39 Identities=10% Similarity=-0.049 Sum_probs=24.1
Q ss_pred hcCCcEEEEecCCCCCCH---H--HHHHHHHHHHHcCCCeEEEcc
Q 010562 448 AYGANVVVAVNMFATDSK---A--ELNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 448 ~fGvpvVVAIN~F~tDT~---~--Ei~~v~~~~~~~g~~~~~~~~ 487 (507)
..++|+++++|+..-..+ . ..+...+++++.|+. +..++
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~S 149 (170)
T 1ek0_A 106 SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETS 149 (170)
T ss_dssp CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECC
T ss_pred CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEe
Confidence 358999999998643221 1 123456677777875 44444
No 438
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=27.80 E-value=31 Score=30.49 Aligned_cols=26 Identities=42% Similarity=0.466 Sum_probs=19.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
+.|+++.+.| |-|.||||+.--|+.-
T Consensus 18 ~~Gei~~l~G----pnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSG----PSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEEC----STTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHhh
Confidence 5688888877 6799999988766443
No 439
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=27.72 E-value=22 Score=31.82 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=20.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.+-||++| |.|.||||++..+++.+
T Consensus 39 ~~~vll~G----~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLG----PPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEES----CTTSSHHHHHHHHHHHH
T ss_pred CceEEEEC----CCCCCHHHHHHHHHHHh
Confidence 34578877 66999999998888776
No 440
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=27.71 E-value=49 Score=35.55 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=33.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP 112 (507)
|||+||+ =|-.+-|||+++-+|+.-| ++.|.++..-=-||
T Consensus 4 ~~i~v~g--g~~s~~gk~~~~~~l~~~l-~~~g~~v~~~k~~p 43 (545)
T 1s1m_A 4 NYIFVTG--GVVSSLGKGIAAASLAAIL-EARGLNVTIMKLDP 43 (545)
T ss_dssp EEEEEEE--CSSSCSCHHHHHHHHHHHH-HTTTCCEEEEEEEC
T ss_pred eEEEEeC--CcccCcchHHHHHHHHHHH-HhCCceeeeeeccc
Confidence 8999994 2567899999999999999 68999987666664
No 441
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=27.65 E-value=37 Score=32.65 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=22.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.|.+++++| |.|.||||++.-|+...
T Consensus 105 ~~G~i~~i~G----~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFG----EFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEEC----CCCCCHhHHHHHHHHHH
Confidence 5689999998 57999999998776544
No 442
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=27.52 E-value=1.5e+02 Score=29.49 Aligned_cols=31 Identities=19% Similarity=0.023 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEcccccccCc
Q 010562 464 SKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 464 T~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~ 494 (507)
|++|+...++.|.++|+..+-.|+.|..||.
T Consensus 186 t~eei~~A~~ia~eaGADfVKTSTGf~~~GA 216 (288)
T 3oa3_A 186 TADEIIAGCVLSSLAGADYVKTSTGFNGPGA 216 (288)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECCCSSSSCCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCCCCCCCCC
Confidence 6889999999999999975556677876664
No 443
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=27.49 E-value=76 Score=26.20 Aligned_cols=40 Identities=5% Similarity=-0.047 Sum_probs=23.0
Q ss_pred HHHHHhh---cCCcEEEEecCCCCC----CHHHHHHHHHHHHHc-CCC
Q 010562 442 HIANTKA---YGANVVVAVNMFATD----SKAELNAVRNAAMAA-GAF 481 (507)
Q Consensus 442 HIeni~~---fGvpvVVAIN~F~tD----T~~Ei~~v~~~~~~~-g~~ 481 (507)
.+..++. -++|+|++.|+..-. ..-..+.+.+++++. +..
T Consensus 97 ~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~ 144 (178)
T 2iwr_A 97 QLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCS 144 (178)
T ss_dssp HHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEE
T ss_pred HHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCe
Confidence 3445544 389999999996531 111223445667665 453
No 444
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=27.44 E-value=85 Score=29.09 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=27.0
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHHHHH----HHHHHHHcCCC
Q 010562 444 ANTKAYGANVVVAVNMFATDSKAELNA----VRNAAMAAGAF 481 (507)
Q Consensus 444 eni~~fGvpvVVAIN~F~tDT~~Ei~~----v~~~~~~~g~~ 481 (507)
+.+++ ++|+|+++|+-..-+++|++. +++.+...|+.
T Consensus 139 ~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~ 179 (274)
T 3t5d_A 139 KRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIK 179 (274)
T ss_dssp HHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 33444 899999999988888888854 44555566775
No 445
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=27.40 E-value=70 Score=34.22 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=15.4
Q ss_pred HHHHHhhcCCcEEEEecCCC
Q 010562 442 HIANTKAYGANVVVAVNMFA 461 (507)
Q Consensus 442 HIeni~~fGvpvVVAIN~F~ 461 (507)
|++.++.+++|+||++|+-.
T Consensus 114 ~l~~l~~~~vPiIVViNKiD 133 (594)
T 1g7s_A 114 ALNILRMYRTPFVVAANKID 133 (594)
T ss_dssp HHHHHHHTTCCEEEEEECGG
T ss_pred HHHHHHHcCCeEEEEecccc
Confidence 33446679999999999854
No 446
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=27.25 E-value=1.3e+02 Score=27.62 Aligned_cols=44 Identities=5% Similarity=-0.003 Sum_probs=30.1
Q ss_pred CCcEEEEecC-CCCCCHHHHHHHHHHHHHcCCCeEEEcccccccCc
Q 010562 450 GANVVVAVNM-FATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (507)
Q Consensus 450 GvpvVVAIN~-F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~ 494 (507)
....|+..|- .++=+-.+++.|.++|++.|+. +++-+.|+.|.-
T Consensus 171 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-li~Dea~~~~~~ 215 (397)
T 3f9t_A 171 DVDGIIGIAGTTELGTIDNIEELSKIAKENNIY-IHVDAAFGGLVI 215 (397)
T ss_dssp CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCE-EEEECTTGGGTG
T ss_pred CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCe-EEEEccccchhh
Confidence 4556665552 3333345688899999999996 788888876543
No 447
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=27.20 E-value=45 Score=28.05 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=12.9
Q ss_pred CCcEEEEecCCCCCCH
Q 010562 450 GANVVVAVNMFATDSK 465 (507)
Q Consensus 450 GvpvVVAIN~F~tDT~ 465 (507)
++|+||++|+..-..+
T Consensus 127 ~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 127 RVPFLFFANKMDAAGA 142 (199)
T ss_dssp BCCEEEEEECTTSTTC
T ss_pred CCCEEEEEECcCCCCC
Confidence 8999999999765444
No 448
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=27.09 E-value=2e+02 Score=25.40 Aligned_cols=65 Identities=22% Similarity=0.145 Sum_probs=46.0
Q ss_pred HHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCH----HHHHHHHHHHHHcCCCeEEEcccccccCcCcc
Q 010562 433 EAGCVNLARHIANTKAYGANVVVAVNMFATDSK----AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAV 497 (507)
Q Consensus 433 ~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~----~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~Ga~ 497 (507)
+....-|.+-|.....-|+..|-+|==.-+-++ .=-..|.+|+++.-.....-.....+||.|+.
T Consensus 58 ~EA~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Gat 126 (137)
T 3qd7_X 58 EECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGAC 126 (137)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEEE
Confidence 555678889999999999999999976666554 34456677777654332333345678999985
No 449
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=26.98 E-value=39 Score=34.03 Aligned_cols=30 Identities=30% Similarity=0.189 Sum_probs=25.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk 103 (507)
++.|+|-|||.+ |||||+-=|++.| ...|+
T Consensus 98 ~~~~vI~VTGTn------GKTTT~~~l~~iL-~~~g~ 127 (454)
T 2am1_A 98 TTVDVFAVTGSN------GKTTTKDMLAHLL-STRYK 127 (454)
T ss_dssp HCCEEEEEECCC------SSSCHHHHHHHHH-TTTSC
T ss_pred CCCCEEEEeCCC------CcHHHHHHHHHHH-HhcCC
Confidence 357899999987 9999999999999 47775
No 450
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=26.96 E-value=39 Score=34.14 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=18.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGL 93 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL 93 (507)
+.|.++.+.| |-|.||||+---|
T Consensus 28 ~~Ge~~~llG----psGsGKSTLLr~i 50 (359)
T 3fvq_A 28 DPGEILFIIG----ASGCGKTTLLRCL 50 (359)
T ss_dssp CTTCEEEEEE----STTSSHHHHHHHH
T ss_pred cCCCEEEEEC----CCCchHHHHHHHH
Confidence 4688888888 7799999985433
No 451
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=26.95 E-value=45 Score=32.34 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccc
Q 010562 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 492 (507)
Q Consensus 439 L~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~wa~G 492 (507)
...|++.+.+.|+|+|+.-=-| ++++++.|+++|++ .. ++.+..|+-|
T Consensus 86 ~~~~~~~al~~G~~vVigTTG~---s~~~~~~L~~aa~~--~~-vv~a~N~s~G 133 (272)
T 4f3y_A 86 TLVHLDAALRHDVKLVIGTTGF---SEPQKAQLRAAGEK--IA-LVFSANMSVG 133 (272)
T ss_dssp HHHHHHHHHHHTCEEEECCCCC---CHHHHHHHHHHTTT--SE-EEECSCCCHH
T ss_pred HHHHHHHHHHcCCCEEEECCCC---CHHHHHHHHHHhcc--CC-EEEECCCCHH
Confidence 3456677778899999864445 57889999999986 32 5788888765
No 452
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=26.92 E-value=39 Score=34.61 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=25.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCc
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~ 104 (507)
-|.|-|||.+ ||||||-=|++.| ...|.+
T Consensus 119 ~~vI~VTGTn------GKTTTt~ml~~iL-~~~G~~ 147 (491)
T 2f00_A 119 RHGIAIAGTH------GKTTTTAMVSSIY-AEAGLD 147 (491)
T ss_dssp SEEEEEESSS------CHHHHHHHHHHHH-HHTTCC
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhCCCC
Confidence 4789999987 9999999999999 477876
No 453
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=26.91 E-value=69 Score=31.67 Aligned_cols=55 Identities=5% Similarity=-0.046 Sum_probs=38.6
Q ss_pred HHHhhHHHHHHHHhhcCCcEEEEecCCCCCC---HHHHHHHHHHHHHcCCCeEEEccc
Q 010562 434 AGCVNLARHIANTKAYGANVVVAVNMFATDS---KAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 434 ~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT---~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
.-++++..+|+.++++|..|.+.+=.|+..+ .+.+..+.+.+.++|+..+.+++.
T Consensus 134 e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT 191 (337)
T 3ble_A 134 EFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIERIFLPDT 191 (337)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3467888999999999999888765433333 344444445556789987778775
No 454
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.90 E-value=22 Score=33.85 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.0
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++++| |.|.||||++.-+++.|.
T Consensus 49 ~ll~G----p~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYG----PPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEEC----SSSSSHHHHHHHHHHHHH
T ss_pred EEEEC----CCCCCHHHHHHHHHHHHc
Confidence 67766 789999999999999984
No 455
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=26.82 E-value=1.3e+02 Score=28.64 Aligned_cols=50 Identities=2% Similarity=-0.061 Sum_probs=36.2
Q ss_pred hHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcccc
Q 010562 438 NLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (507)
Q Consensus 438 NL~kHIeni~~-fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~w 489 (507)
++.+-|+.+++ .++|++|=+.-.. +.+|+..+.+.++++|+..+.+++..
T Consensus 145 ~~~~iv~~vr~~~~~Pv~vKi~~~~--~~~~~~~~a~~~~~~G~d~i~v~~~~ 195 (311)
T 1jub_A 145 ATEKLLKEVFTFFTKPLGVKLPPYF--DLVHFDIMAEILNQFPLTYVNSVNSI 195 (311)
T ss_dssp HHHHHHHHHTTTCCSCEEEEECCCC--SHHHHHHHHHHHTTSCCCEEEECCCE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC--CHHHHHHHHHHHHHcCCcEEEecCCC
Confidence 45566777776 4899999776543 57788888888899999755555543
No 456
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=26.80 E-value=95 Score=27.08 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=27.3
Q ss_pred HHHHhh--cCCcEEEEecCCCCCCHHHH--------------HHHHHHHHHcCCCeEEEcc
Q 010562 443 IANTKA--YGANVVVAVNMFATDSKAEL--------------NAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 443 Ieni~~--fGvpvVVAIN~F~tDT~~Ei--------------~~v~~~~~~~g~~~~~~~~ 487 (507)
++.+++ -++|+|+++|+-.-..+.+. +...+++++.|...+..++
T Consensus 129 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 129 YPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp HHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred HHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 444444 38999999999754333322 2346778888873344444
No 457
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=26.73 E-value=70 Score=31.38 Aligned_cols=43 Identities=28% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePSl 114 (507)
+++..|.++| |-|.||||+.--|+..+. .-+.+..+.-..|+-
T Consensus 72 ~~~~~v~lvG----~pgaGKSTLln~L~~~~~-~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSG----PPGAGKSTFIEYFGKMLT-ERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEEC----CTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC--
T ss_pred cCceEEEEEc----CCCCCHHHHHHHHHHHhh-hcCCeEEEEeecCCC
Confidence 3466777777 459999999999998884 556676666666653
No 458
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=26.62 E-value=36 Score=34.45 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=25.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCC
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk 103 (507)
.+.|+|-|||.+ |||||+-=|++.| ...|+
T Consensus 98 ~~~~vI~VTGTn------GKTTT~~~l~~iL-~~~g~ 127 (452)
T 1gg4_A 98 VPARVVALTGSS------GKTSVKEMTAAIL-SQCGN 127 (452)
T ss_dssp SCCEEEEEECSS------CHHHHHHHHHHHH-TTTSC
T ss_pred CCCCEEEEeCCC------CcHHHHHHHHHHH-HhcCC
Confidence 357899999987 9999999999999 57785
No 459
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=26.52 E-value=65 Score=28.51 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHHHHhhhhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCC
Q 010562 156 LAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLT 212 (507)
Q Consensus 156 laA~iDn~i~h~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt 212 (507)
|-+++++||.|.. ..++...|.|+-.||....++.++
T Consensus 57 LraAle~~im~~~--------------------piP~Di~raL~~VGI~P~id~~~S 93 (117)
T 3tl8_B 57 LRTALERHVMQRL--------------------PIPLDIGSALQNVGINPSIDLGES 93 (117)
T ss_dssp HHHHHHHHHTTCC--------------------CCCHHHHHHHHHTTCCCCCCCCSC
T ss_pred HHHHHHHHHHhcC--------------------CCCHHHHHHHHhCCCCCCCcchHH
Confidence 6788999999874 356888899999999988777654
No 460
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=26.52 E-value=27 Score=34.90 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=20.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~q 95 (507)
+|+-||.|| |.|.||||++..|.+
T Consensus 146 ~g~gvli~G----~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTG----RSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEE----SSSSSHHHHHHHHHT
T ss_pred CCEEEEEEc----CCCCCHHHHHHHHHH
Confidence 588888888 679999999988744
No 461
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=26.46 E-value=64 Score=27.98 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=28.2
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcc
Q 010562 441 RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 441 kHIeni~~f--GvpvVVAIN~F~tDT~~E--------------i~~v~~~~~~~g~~~~~~~~ 487 (507)
..++.++++ ++|+||++|+-.-..+.+ .+...+++++.|...+..++
T Consensus 123 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 123 KWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp THHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 334445554 899999999864322221 23456778888875444444
No 462
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=26.45 E-value=23 Score=32.58 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.4
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-||++| |.|.||||++.-|++.+.
T Consensus 49 ~~ll~G----~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLG----PTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEES----CSSSSHHHHHHHHHHHHH
T ss_pred EEEEEC----CCCcCHHHHHHHHHHHHc
Confidence 577777 669999999999999984
No 463
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=26.43 E-value=25 Score=33.04 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=25.8
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcc
Q 010562 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCS 487 (507)
Q Consensus 443 Ieni~~fGvpvVVAIN~F~tDT~~Ei~-~v~~~~~~~g~~~~~~~~ 487 (507)
+..++.+++|+||++|+..-....++. .+.++++..|++ ++.++
T Consensus 105 ~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i~~S 149 (274)
T 3i8s_A 105 TLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VIPLV 149 (274)
T ss_dssp HHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EEECC
T ss_pred HHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EEEEE
Confidence 344556699999999996321111110 235666778886 54443
No 464
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=26.39 E-value=2.1e+02 Score=27.63 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEccccc
Q 010562 463 DSKAELNAVRNAAMAAGAFDAVVCSHHA 490 (507)
Q Consensus 463 DT~~Ei~~v~~~~~~~g~~~~~~~~~wa 490 (507)
+++++++.|+++|++.|+. +++-+.+.
T Consensus 218 ~~~~~l~~l~~l~~~~~~~-li~DEv~~ 244 (429)
T 3k28_A 218 PQPGFLEGLREVTEQNGAL-LIFDEVMT 244 (429)
T ss_dssp CCTTHHHHHHHHHHHHTCE-EEEECTTT
T ss_pred CCHHHHHHHHHHHHHcCCE-EEEecccc
Confidence 3789999999999999996 77777765
No 465
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=26.11 E-value=29 Score=31.80 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=18.8
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
++|+|| |.|.|||+.++-+...+
T Consensus 7 i~l~tG----~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITG----TPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEEC----CTTSSHHHHHHHHHHHC
T ss_pred EEEEEe----CCCCCHHHHHHHHHHHH
Confidence 677887 57999999998877666
No 466
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=26.10 E-value=1.6e+02 Score=26.27 Aligned_cols=50 Identities=8% Similarity=0.115 Sum_probs=36.0
Q ss_pred hHHHHHHHHhhcCCcEEEE-e--c----------------CCCCCCHHHHHHHHHHHHHcCCCeEEEccc
Q 010562 438 NLARHIANTKAYGANVVVA-V--N----------------MFATDSKAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 438 NL~kHIeni~~fGvpvVVA-I--N----------------~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
.+++.++.+++.|+++|=. + + ....+.-+.++.+.++|.+.|.. +++.-|
T Consensus 43 ~~~~~l~~~k~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~Gi~-vil~~~ 111 (351)
T 3vup_A 43 RIEPEFKKLHDAGGNSMRLWIHIQGETTPAFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNIL-VFPCLW 111 (351)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEESCSSSCHHHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEECcccccccCcccccccccccccccHHHHHHHHHHHHHHHHCCCe-EEEEec
Confidence 5678899999999999832 1 0 11224457789999999999996 655443
No 467
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=25.91 E-value=13 Score=32.03 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=26.8
Q ss_pred hhHHHHHHHHhhc---CCcEEEEecCCCCCCHHHH--HHHHHHHHHcCCC
Q 010562 437 VNLARHIANTKAY---GANVVVAVNMFATDSKAEL--NAVRNAAMAAGAF 481 (507)
Q Consensus 437 ~NL~kHIeni~~f---GvpvVVAIN~F~tDT~~Ei--~~v~~~~~~~g~~ 481 (507)
.++.+.++.++++ ++|+|+++|+..-..+.++ +...+++++.++.
T Consensus 122 ~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 171 (199)
T 3l0i_B 122 NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP 171 (199)
T ss_dssp HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC
T ss_pred HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe
Confidence 3445555555554 8999999999765433322 3456777777875
No 468
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=25.89 E-value=38 Score=32.01 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=21.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
+.++-||++| |-|.||||++..|+..+
T Consensus 47 ~~~~~vLL~G----p~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYG----PPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEEC----SSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEEC----CCCcCHHHHHHHHHHHh
Confidence 4467788887 67999999988877665
No 469
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=25.85 E-value=90 Score=25.86 Aligned_cols=38 Identities=13% Similarity=0.013 Sum_probs=25.7
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 010562 443 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (507)
Q Consensus 443 Ieni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~ 481 (507)
.+.++..++|+++++|+-.-..+. -+.+.+++++.|..
T Consensus 115 ~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 115 YQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCC
T ss_pred HHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhh
Confidence 344556899999999997654332 33456677777764
No 470
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=25.82 E-value=1.4e+02 Score=27.59 Aligned_cols=31 Identities=23% Similarity=-0.011 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEcccccccCcC
Q 010562 464 SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 464 T~~Ei~~v~~~~~~~g~~~~~~~~~wa~GG~G 495 (507)
+.+|++.|.++|++.|+. +++-+.|+..+-+
T Consensus 168 ~~~~l~~l~~~~~~~~~~-li~De~~~~~~~~ 198 (377)
T 3fdb_A 168 APEWLNELCDLAHRYDAR-VLVDEIHAPLVFD 198 (377)
T ss_dssp CHHHHHHHHHHHHHTTCE-EEEECTTGGGBSS
T ss_pred CHHHHHHHHHHHHHcCCE-EEEEcccchhhcC
Confidence 468999999999999996 7788888775443
No 471
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=25.71 E-value=25 Score=32.11 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=20.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
++=||++| |.|.||||++..+++.++
T Consensus 50 ~~~vll~G----~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIG----PTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEEC----CTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 34566765 679999999999988873
No 472
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=25.54 E-value=1.1e+02 Score=29.27 Aligned_cols=37 Identities=24% Similarity=0.184 Sum_probs=26.5
Q ss_pred HHHhhcCCcEEEEecCCCCCC-HHHH-HHHHHHHHHcCC
Q 010562 444 ANTKAYGANVVVAVNMFATDS-KAEL-NAVRNAAMAAGA 480 (507)
Q Consensus 444 eni~~fGvpvVVAIN~F~tDT-~~Ei-~~v~~~~~~~g~ 480 (507)
+.+++.+.|+++++|+-.... .+++ +.+.++++..|.
T Consensus 110 ~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 110 NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNF 148 (301)
T ss_dssp HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCC
T ss_pred HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCc
Confidence 345568999999999987766 4555 556666666675
No 473
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=25.48 E-value=74 Score=26.97 Aligned_cols=44 Identities=11% Similarity=-0.038 Sum_probs=25.8
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHH-HcCCCeEEEcccccccCcC
Q 010562 449 YGANVVVAVNMFATDS-KAELNAVRNAAM-AAGAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 449 fGvpvVVAIN~F~tDT-~~Ei~~v~~~~~-~~g~~~~~~~~~wa~GG~G 495 (507)
.++|+||++|+..-.. +...+.+.++++ ..++. +..++ ++-|+|
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~g 161 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP-YFETS--AKEAIN 161 (207)
T ss_dssp GGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC-EEECB--TTTTBS
T ss_pred CCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce-EEEEe--CCCCCC
Confidence 5899999999965431 122344566666 45665 44444 333444
No 474
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=25.47 E-value=39 Score=31.80 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=22.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.++-++++| |.|.||||++..+++.+.
T Consensus 36 ~~~~lll~G----~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYG----SVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEEC----SSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEC----CCCCcHHHHHHHHHHHHH
Confidence 356788887 569999999999998884
No 475
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=25.33 E-value=29 Score=31.92 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=15.6
Q ss_pred EEEEeecCCCCCCCCcchhHhhHH
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLC 94 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~ 94 (507)
+||||| ++|+||||.+.-|+
T Consensus 1 ~ilV~G----g~~SGKS~~A~~la 20 (180)
T 1c9k_A 1 MILVTG----GARSGKSRHAEALI 20 (180)
T ss_dssp CEEEEE----CTTSSHHHHHHHHH
T ss_pred CEEEEC----CCCCcHHHHHHHHH
Confidence 377887 78999999877664
No 476
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=25.23 E-value=26 Score=36.69 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=20.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
.|+.|+|+| |-|.|||||.-.|..-+
T Consensus 259 ~g~~i~I~G----ptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVG----ETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEE----STTSSHHHHHHHHGGGS
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhhC
Confidence 577899998 45999999987765444
No 477
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=25.18 E-value=23 Score=31.14 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=18.6
Q ss_pred cEEEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 70 KlIlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
..|.+|+ |.|.||||++--|++.|
T Consensus 4 ~~i~i~G----~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDG----PAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEEC----CTTSSHHHHHHHHHHHT
T ss_pred eEEEEEC----CCCCCHHHHHHHHHHhc
Confidence 4677776 46999999988887666
No 478
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=25.15 E-value=42 Score=31.27 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=31.8
Q ss_pred cCHHHHHHHHhhHHHHHHHHhh-c-CCcEEEEecCCCCCCHHHH-HHHHHHHHHcCC
Q 010562 427 ENVALVEAGCVNLARHIANTKA-Y-GANVVVAVNMFATDSKAEL-NAVRNAAMAAGA 480 (507)
Q Consensus 427 enl~al~~G~~NL~kHIeni~~-f-GvpvVVAIN~F~tDT~~Ei-~~v~~~~~~~g~ 480 (507)
.|.|.+++=+....++.+-+.. | ....++-||- +-+.+|+ +.|.+..++.|+
T Consensus 162 D~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg--~~~~eeV~~~I~~~l~k~G~ 216 (217)
T 3umf_A 162 DNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDA--SGTVDAIFDKVNHELQKFGV 216 (217)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEET--TSCHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC--CCCHHHHHHHHHHHHHHcCC
Confidence 3567788777776666555443 2 2334667774 3355554 667777777776
No 479
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=24.98 E-value=70 Score=31.98 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=23.4
Q ss_pred CcEEEEeecCCCCCCCCcchhH-hhHHHHHhhhcCCcEEEE
Q 010562 69 GYYVVVGGITPTPLGEGKSTTT-VGLCQALGAFLDKKVVTC 108 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTtt-IGL~qaL~~~lGk~a~~~ 108 (507)
||-+||.+ |-|.|||++. +-+.+.+ ..-|+++++.
T Consensus 2 g~~~lv~a----~TGsGKT~~~l~~~l~~~-~~~g~~~lvl 37 (431)
T 2v6i_A 2 RELTVLDL----HPGAGKTRRVLPQLVREA-VKKRLRTVIL 37 (431)
T ss_dssp CCEEEEEC----CTTSCTTTTHHHHHHHHH-HHTTCCEEEE
T ss_pred CCEEEEEc----CCCCCHHHHHHHHHHHHH-HhCCCCEEEE
Confidence 67788876 5599999997 6566444 2446665554
No 480
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=24.93 E-value=20 Score=34.40 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 66 ~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.|..+.+|+.| |.|.||||++..|++.|.
T Consensus 55 iPkkn~ili~G----PPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCG----PANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEES----CGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 35555688877 889999999999998883
No 481
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=24.93 E-value=40 Score=34.76 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=30.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCCC
Q 010562 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (507)
Q Consensus 68 ~GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lRePS 113 (507)
+-|.|-|||.| |||||+-=|.+.| ...|+++ ..+--|.
T Consensus 63 ~~~vI~VtGTN------GKtST~~~l~~iL-~~~G~~v-G~~tSp~ 100 (487)
T 2vos_A 63 SYPSIHIAGTN------GKTSVARMVDALV-TALHRRT-GRTTSPH 100 (487)
T ss_dssp SSCEEEEECSS------SHHHHHHHHHHHH-HHTTCCE-EEECSSC
T ss_pred cCeEEEEeCCC------CcHHHHHHHHHHH-HHcCCCe-EEECCCC
Confidence 35799999987 9999999999999 5789886 3344443
No 482
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=24.71 E-value=27 Score=36.53 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=31.4
Q ss_pred cccCceeeecch---hhhhccCCCCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 47 LYGKYKAKVLLS---VLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 47 ~YG~~kAKi~l~---~l~~~~~~~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
.||-...|-.+. .+..+...-.|+.+++.| |-|.||||++.-|+..++
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~G----p~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAG----PPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEES----SSSSSHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEEC----CCCCCHHHHHHHHHHhcC
Confidence 466555544331 223333334688888887 679999999998888874
No 483
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=24.70 E-value=37 Score=29.04 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=28.7
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHc-CCCeEEEcccccccCcC
Q 010562 443 IANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAA-GAFDAVVCSHHAHGGKG 495 (507)
Q Consensus 443 Ieni~~fGvpvVVAIN~F~tDT~~E--i~~v~~~~~~~-g~~~~~~~~~wa~GG~G 495 (507)
++.....++|++|++|+..-..+.+ .+.+++++++. +.. +..++ ++-|+|
T Consensus 124 i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~-~~~~S--A~~g~g 176 (192)
T 2il1_A 124 IDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMR-FCEAS--AKDNFN 176 (192)
T ss_dssp HHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCE-EEECB--TTTTBS
T ss_pred HHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCe-EEEEe--CCCCCC
Confidence 3334445899999999975433222 23456777764 554 44444 344555
No 484
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=24.64 E-value=60 Score=34.90 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=49.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHhhHHHHHhhhcCCcEEEEecCC-------CCCC-----ccccccCC-CCC--Cceeee
Q 010562 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP-------SQGP-----TFGIKGGA-AGG--GYSQVI 133 (507)
Q Consensus 69 GKlIlVTaitPTP~GEGKTTttIGL~qaL~~~lGk~a~~~lReP-------SlGP-----~FGiKGGA-aGG--GysQVi 133 (507)
-|||+||+ =|-.+-|||+++-+|+.-| ++.|.++..-=-|| -|-| +|=-.-|+ +|= |..|
T Consensus 12 ~~~i~v~g--g~~s~~gk~~~~~~~~~~l-~~~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~g~~~-- 86 (550)
T 1vco_A 12 RKYVFITG--GVVSSLGKGILTSSLGALL-RARGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYE-- 86 (550)
T ss_dssp CEEEEEEE--CSSSCSCHHHHHHHHHHHH-HTTTCCEEEEEEECSSCSSGGGSCSSTTSCCEECTTCCEECTHHHHHH--
T ss_pred eeEEEEeC--CcccCcchHHHHHHHHHHH-HhCCceeeEeecccccccCccccCcccCCceEECCCCceehhhhccHH--
Confidence 58999994 2457899999999999999 68999988766665 4544 34443322 110 2223
Q ss_pred cCcccccccchhh
Q 010562 134 PMDEFNLHLTGDI 146 (507)
Q Consensus 134 PmediNLHfTGD~ 146 (507)
-|-+++|+=.+|+
T Consensus 87 ~~~~~~l~~~~~~ 99 (550)
T 1vco_A 87 RFLDMDLSRGNNL 99 (550)
T ss_dssp HHHTSCCCGGGEE
T ss_pred hcCCcccCCCCCe
Confidence 3555777777775
No 485
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=24.64 E-value=1.8e+02 Score=29.12 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=28.9
Q ss_pred hHHHHHHHHhhcCCc-EEEEecCCCCCC--HHHH----HHHHHHHHHcC
Q 010562 438 NLARHIANTKAYGAN-VVVAVNMFATDS--KAEL----NAVRNAAMAAG 479 (507)
Q Consensus 438 NL~kHIeni~~fGvp-vVVAIN~F~tDT--~~Ei----~~v~~~~~~~g 479 (507)
...+|+..++..|+| +||++|+-.--. ++.+ +.+++++++.|
T Consensus 144 qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g 192 (434)
T 1zun_B 144 QTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIA 192 (434)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhC
Confidence 445677788888996 899999976432 3333 44566677777
No 486
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=24.42 E-value=28 Score=31.61 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=18.8
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
||++| |-|.||||++..++..++
T Consensus 47 vll~G----~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVG----PPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBC----SSCSSHHHHHHHHHHHHT
T ss_pred EEEEC----CCCCcHHHHHHHHHHHhC
Confidence 66666 789999999998887763
No 487
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=24.17 E-value=29 Score=37.27 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=18.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTV 91 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttI 91 (507)
++|+.+++.| |.|.||||+|-
T Consensus 223 ~~g~~~~ffG----lSGtGKTtLs~ 243 (529)
T 1j3b_A 223 KEGDVAVFFG----LSGTGKTTLST 243 (529)
T ss_dssp TTCCEEEEEE----CTTSCHHHHTC
T ss_pred CCCcEEEEEc----cccCChhhHhh
Confidence 6788888888 89999999773
No 488
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=24.17 E-value=3.1e+02 Score=22.85 Aligned_cols=123 Identities=14% Similarity=0.152 Sum_probs=61.2
Q ss_pred cccCchHHHHHHHHHhcCCCCeEEeeccccccc---ccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCC
Q 010562 344 AHGNSSIVADKIALKLVGPGGFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPL 420 (507)
Q Consensus 344 AHG~nSviAtk~ALkLag~~dyVVTEAGFGaDl---GaEKF~dIKCR~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL 420 (507)
.+|-...++.++.-...+ .++.|.-.|++-+- ..++|.. .....+||.|||-.-.--+.........
T Consensus 36 ~~~~~~~l~~~l~~~~~~-~~~~~~n~g~~G~~~~~~~~~~~~---~~~~~~pd~vvi~~G~ND~~~~~~~~~~------ 105 (216)
T 3rjt_A 36 GNGYVALVDAHLQVLHPD-WRIRVVNVGTSGNTVADVARRWED---DVMALQPDYVSLMIGVNDVWRQFDMPLV------ 105 (216)
T ss_dssp CSSHHHHHHHHHHHHCGG-GCCEEEECCCTTCCHHHHHHHHHH---HTGGGCCSEEEEECCHHHHHHHHHSTTC------
T ss_pred CccHHHHHHHHHHhhCCC-CCeEEEECCCCCccHHHHHHHHHh---HHhhcCCCEEEEEeeccccchhhccccc------
Confidence 344445566665554421 13556666664432 1222221 1223579988886544333221110000
Q ss_pred cccccccCHHHHHHHHhhHHHHHHHHhhcCCcEEEEe-cCCCCCC--------HHHHHHHHHHHHHcCCC
Q 010562 421 DHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFATDS--------KAELNAVRNAAMAAGAF 481 (507)
Q Consensus 421 ~~~l~~enl~al~~G~~NL~kHIeni~~fGvpvVVAI-N~F~tDT--------~~Ei~~v~~~~~~~g~~ 481 (507)
.. ....++..++ ||.+-|+.+++.|.++|++- ...+... .+=-+.++++|++.|+.
T Consensus 106 -~~-~~~~~~~~~~---~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~ 170 (216)
T 3rjt_A 106 -VE-RHVGIDEYRD---TLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVP 170 (216)
T ss_dssp -GG-GCCCHHHHHH---HHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred -cc-cCCCHHHHHH---HHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCe
Confidence 00 1223444444 66666788887798888873 2222221 12235677889998986
No 489
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=24.11 E-value=25 Score=37.41 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=23.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+.|..|.++|. -|.||||+..-|+.-|.
T Consensus 367 ~~G~iI~LiG~----sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGL----SGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEES----SCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECC----CCChHHHHHHHHHHhhc
Confidence 36889999996 59999999998888884
No 490
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=24.05 E-value=22 Score=36.42 Aligned_cols=48 Identities=15% Similarity=-0.036 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccc
Q 010562 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 440 ~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
.+.++.++++++|+||++|+-.-..+++.+...+++++.|+. ++.++.
T Consensus 130 ~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~-v~~vSA 177 (423)
T 3qq5_A 130 DDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAK-VLLVSA 177 (423)
T ss_dssp HHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCC-CCCCSS
T ss_pred HHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCC-EEEEEC
Confidence 455667777899999999997654444445566666667775 444443
No 491
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=24.04 E-value=46 Score=33.96 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=18.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGL 93 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL 93 (507)
+.|.++.+.| |-|.||||+---|
T Consensus 27 ~~Ge~~~llG----psGsGKSTLLr~i 49 (381)
T 3rlf_A 27 HEGEFVVFVG----PSGCGKSTLLRMI 49 (381)
T ss_dssp CTTCEEEEEC----CTTSSHHHHHHHH
T ss_pred CCCCEEEEEc----CCCchHHHHHHHH
Confidence 4688888887 6799999986544
No 492
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=24.02 E-value=28 Score=31.95 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 71 lIlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
-+|++| |.|.||||++..+++.+.
T Consensus 48 ~~ll~G----~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAG----PPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEES----CTTSSHHHHHHHHHHHHH
T ss_pred eEEEEC----cCCCCHHHHHHHHHHHhc
Confidence 378887 679999999999999984
No 493
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=23.86 E-value=1.1e+02 Score=30.33 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCC-cEEEEecCCCCCCHHH----HHHHHHHHHH---cCCCeEEEccccc
Q 010562 439 LARHIANTKAYGA-NVVVAVNMFATDSKAE----LNAVRNAAMA---AGAFDAVVCSHHA 490 (507)
Q Consensus 439 L~kHIeni~~fGv-pvVVAIN~F~tDT~~E----i~~v~~~~~~---~g~~~~~~~~~wa 490 (507)
...|+..++.+|+ |+||++|+-.--++++ .+.+++++++ .++. ++.++.+.
T Consensus 125 t~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-~i~vSA~~ 183 (410)
T 1kk1_A 125 TREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP-IIPISALH 183 (410)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC-EEECBTTT
T ss_pred HHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe-EEEeeCCC
Confidence 3456666677787 6899999987655543 3445555553 3444 55555443
No 494
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=23.86 E-value=23 Score=29.65 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEccc
Q 010562 439 LARHIANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 439 L~kHIeni~~fGvpvVVAIN~F~tDT~~Ei-~~v~~~~~~~g~~~~~~~~~ 488 (507)
+...++.+++.++|++++.|+-.-....++ +.+.+++++.|.. +..+++
T Consensus 101 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~Sa 150 (188)
T 2wjg_A 101 NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLSA 150 (188)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECBG
T ss_pred HHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCC-eEEEEe
Confidence 345566677789999999998422111111 1345667777886 555553
No 495
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=23.81 E-value=1.5e+02 Score=26.69 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=41.9
Q ss_pred CHHHHHHHHhhHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHH----HcCCCeEEEccccccc
Q 010562 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAM----AAGAFDAVVCSHHAHG 492 (507)
Q Consensus 428 nl~al~~G~~NL~kHIeni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~----~~g~~~~~~~~~wa~G 492 (507)
|-+..++.+..++++|+-.+.+|.++||.-=-+. +.+.-++.+++.++ +.|+. .++-+++..|
T Consensus 79 ~~~~r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~-~~~~~~~~l~~l~~~a~~~~gv~-l~lEn~~~~~ 145 (270)
T 3aam_A 79 EGELWEKSVASLADDLEKAALLGVEYVVVHPGSG-RPERVKEGALKALRLAGVRSRPV-LLVENTAGGG 145 (270)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHTCCEEEECCCBS-CHHHHHHHHHHHHHHHTCCSSSE-EEEECCCCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC-CHHHHHHHHHHHHHhhcccCCCE-EEEecCCCCC
Confidence 3356778899999999999999999998532222 21334444554444 45885 7787775443
No 496
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=23.73 E-value=51 Score=32.11 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=21.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHhhHHHH
Q 010562 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (507)
Q Consensus 67 ~~GKlIlVTaitPTP~GEGKTTttIGL~qa 96 (507)
+.|.+++|+| |.|.||||++.-|+-.
T Consensus 120 ~~G~i~~I~G----~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFG----EFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEEC----CTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHH
Confidence 6799999998 6699999998877654
No 497
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.53 E-value=29 Score=32.42 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHHh
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL~ 98 (507)
+|++| |.|.||||++.-+++.++
T Consensus 61 ~ll~G----~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYG----PPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEEC----STTSSHHHHHHHHHHHHH
T ss_pred EEEEC----CCCCCHHHHHHHHHHHhC
Confidence 77777 679999999999999984
No 498
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=23.49 E-value=1.8e+02 Score=25.07 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccc
Q 010562 444 ANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH 488 (507)
Q Consensus 444 eni~~fGvpvVVAIN~F~tDT~~Ei~~v~~~~~~~g~~~~~~~~~ 488 (507)
+.-...|.|.||. ..++++|+..+.+.+++.|+...++.+.
T Consensus 48 ~~W~~~g~~Kvvl----k~~~e~el~~l~~~a~~~gl~~~~i~DA 88 (121)
T 1wn2_A 48 EAWFREGQKKVVV----KVESEEELFKLKAEAEKLGLPNALIRDA 88 (121)
T ss_dssp HHHHHTTCCEEEE----EESSHHHHHHHHHHHHHTTCCEEEEECT
T ss_pred HHHHHCCCcEEEE----ecCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 3344579998874 3567999999999999999974444443
No 499
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.45 E-value=29 Score=31.47 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.4
Q ss_pred EEEeecCCCCCCCCcchhHhhHHHHH
Q 010562 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (507)
Q Consensus 72 IlVTaitPTP~GEGKTTttIGL~qaL 97 (507)
|+++| |-|.||||++..|+..+
T Consensus 48 vll~G----~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 48 VLMVG----PPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEC----CTTSCHHHHHHHHHHHH
T ss_pred EEEEC----cCCCCHHHHHHHHHHHc
Confidence 77777 57999999998887766
No 500
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=23.41 E-value=1.3e+02 Score=28.83 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=47.8
Q ss_pred EEeeehHHHhcCCCCCccCCCCCcccccccCHHHHHHHHhh------------HHHHHHHHhhcCCcEEEEecCCC-CCC
Q 010562 398 IVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVN------------LARHIANTKAYGANVVVAVNMFA-TDS 464 (507)
Q Consensus 398 lVaTvRALK~HGG~~~~~~g~pL~~~l~~enl~al~~G~~N------------L~kHIeni~~fGvpvVVAIN~F~-tDT 464 (507)
++.|+|. +..||..... ++++.+-...+++.|+.. ..+=++..++.|+.+|+.-=-|. |-+
T Consensus 81 iI~T~Rt-~~EGG~~~~~-----~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~ 154 (258)
T 4h3d_A 81 LLFTFRS-VVEGGEKLIS-----RDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPK 154 (258)
T ss_dssp EEEECCC-GGGTCSCCCC-----HHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCC
T ss_pred EEEEEec-hhhCCCCCCC-----HHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEecCCCCCC
Confidence 7889996 6788864321 123333333444445321 22223445678999888776665 445
Q ss_pred HHHHHHHHHHHHHcCCC
Q 010562 465 KAELNAVRNAAMAAGAF 481 (507)
Q Consensus 465 ~~Ei~~v~~~~~~~g~~ 481 (507)
.+|+..+.+.+.+.|+.
T Consensus 155 ~~el~~~~~~~~~~gaD 171 (258)
T 4h3d_A 155 KEEIVSRLCRMQELGAD 171 (258)
T ss_dssp HHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 67888877788888974
Done!