Query 010563
Match_columns 507
No_of_seqs 392 out of 2927
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 01:59:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0514 RecQ Superfamily II DN 100.0 5.1E-91 1.1E-95 713.8 41.3 401 24-441 3-403 (590)
2 KOG0352 ATP-dependent DNA heli 100.0 7.6E-92 1.6E-96 670.2 32.7 428 23-453 4-447 (641)
3 PLN03137 ATP-dependent DNA hel 100.0 1.2E-83 2.6E-88 693.8 47.8 420 19-440 441-869 (1195)
4 KOG0351 ATP-dependent DNA heli 100.0 4E-83 8.6E-88 690.9 34.1 424 24-455 250-678 (941)
5 KOG0353 ATP-dependent DNA heli 100.0 1E-80 2.2E-85 586.1 27.3 407 18-439 74-527 (695)
6 PRK11057 ATP-dependent DNA hel 100.0 1.4E-75 3E-80 627.3 49.4 403 19-441 6-408 (607)
7 TIGR00614 recQ_fam ATP-depende 100.0 3.2E-75 6.9E-80 609.3 47.2 394 29-438 2-402 (470)
8 TIGR01389 recQ ATP-dependent D 100.0 2.5E-75 5.4E-80 627.1 47.6 395 27-440 2-396 (591)
9 PRK04837 ATP-dependent RNA hel 100.0 2.5E-53 5.4E-58 439.9 35.9 341 15-375 8-372 (423)
10 PTZ00110 helicase; Provisional 100.0 2.9E-52 6.4E-57 441.4 39.8 345 14-376 129-495 (545)
11 KOG0331 ATP-dependent RNA heli 100.0 3.2E-53 7E-58 427.4 30.7 341 16-376 92-459 (519)
12 PRK11776 ATP-dependent RNA hel 100.0 7.5E-52 1.6E-56 433.4 38.1 343 14-376 3-360 (460)
13 PRK10590 ATP-dependent RNA hel 100.0 1.2E-51 2.5E-56 430.3 37.4 342 16-376 2-363 (456)
14 PRK04537 ATP-dependent RNA hel 100.0 1.1E-51 2.3E-56 438.5 37.5 341 16-376 10-375 (572)
15 PRK11192 ATP-dependent RNA hel 100.0 2.7E-51 5.9E-56 426.5 39.2 342 16-374 2-361 (434)
16 PRK01297 ATP-dependent RNA hel 100.0 3.3E-51 7.1E-56 429.7 37.6 346 14-375 86-452 (475)
17 KOG0330 ATP-dependent RNA heli 100.0 5.8E-52 1.3E-56 393.4 28.1 350 8-380 54-422 (476)
18 PLN00206 DEAD-box ATP-dependen 100.0 2.1E-51 4.6E-56 433.6 35.4 343 13-375 119-485 (518)
19 PRK11634 ATP-dependent RNA hel 100.0 2.1E-50 4.5E-55 431.0 41.1 343 15-377 6-364 (629)
20 COG0513 SrmB Superfamily II DN 100.0 1.8E-50 3.9E-55 423.8 36.9 343 15-377 29-393 (513)
21 PTZ00424 helicase 45; Provisio 100.0 2.4E-49 5.1E-54 408.6 36.6 344 15-375 28-384 (401)
22 KOG0333 U5 snRNP-like RNA heli 100.0 2.7E-49 5.8E-54 387.4 30.1 342 12-371 242-630 (673)
23 KOG0328 Predicted ATP-dependen 100.0 3.5E-49 7.6E-54 359.6 26.0 348 9-376 21-384 (400)
24 TIGR03817 DECH_helic helicase/ 100.0 2.7E-48 5.8E-53 422.5 35.0 339 20-371 19-394 (742)
25 KOG0345 ATP-dependent RNA heli 100.0 3.8E-48 8.3E-53 375.3 30.3 335 20-376 11-375 (567)
26 KOG0338 ATP-dependent RNA heli 100.0 1.9E-48 4.2E-53 380.0 22.7 343 14-377 180-545 (691)
27 KOG0342 ATP-dependent RNA heli 100.0 2.2E-47 4.8E-52 372.5 30.1 346 10-375 77-447 (543)
28 KOG0343 RNA Helicase [RNA proc 100.0 2.8E-47 6E-52 375.0 27.4 339 14-375 68-432 (758)
29 KOG0340 ATP-dependent RNA heli 100.0 7.9E-47 1.7E-51 354.5 26.5 352 13-381 5-377 (442)
30 KOG0336 ATP-dependent RNA heli 100.0 1.2E-46 2.7E-51 358.4 25.0 336 20-375 225-582 (629)
31 KOG0348 ATP-dependent RNA heli 100.0 6.3E-46 1.4E-50 364.4 25.3 347 14-375 135-564 (708)
32 KOG0326 ATP-dependent RNA heli 100.0 7.5E-47 1.6E-51 349.7 16.8 344 14-380 84-444 (459)
33 KOG0346 RNA helicase [RNA proc 100.0 3.6E-44 7.7E-49 344.8 24.7 347 8-376 12-424 (569)
34 KOG0347 RNA helicase [RNA proc 100.0 4.8E-44 1E-48 352.2 24.1 336 15-379 181-584 (731)
35 KOG0335 ATP-dependent RNA heli 100.0 7.1E-44 1.5E-48 353.8 24.0 340 16-371 75-450 (482)
36 KOG0332 ATP-dependent RNA heli 100.0 5.9E-43 1.3E-47 330.3 25.2 351 7-376 82-455 (477)
37 TIGR00580 mfd transcription-re 100.0 1.6E-41 3.5E-46 372.7 39.7 321 19-365 433-770 (926)
38 PRK13767 ATP-dependent helicas 100.0 1.4E-41 2.9E-46 377.1 39.2 319 22-362 18-395 (876)
39 PRK02362 ski2-like helicase; P 100.0 7.5E-42 1.6E-46 375.7 34.4 330 16-366 2-398 (737)
40 PRK14701 reverse gyrase; Provi 100.0 1E-41 2.2E-46 390.0 32.7 333 23-376 65-467 (1638)
41 PRK10917 ATP-dependent DNA hel 100.0 1.2E-40 2.6E-45 361.3 38.7 316 23-363 247-587 (681)
42 KOG0341 DEAD-box protein abstr 100.0 4.1E-43 8.9E-48 332.3 13.8 331 15-366 170-529 (610)
43 KOG0339 ATP-dependent RNA heli 100.0 8.4E-41 1.8E-45 326.2 29.0 347 12-377 220-587 (731)
44 COG1201 Lhr Lhr-like helicases 100.0 1.1E-40 2.3E-45 354.6 32.0 323 21-364 7-361 (814)
45 TIGR00643 recG ATP-dependent D 100.0 6.9E-40 1.5E-44 353.1 38.4 313 25-362 223-563 (630)
46 PRK10689 transcription-repair 100.0 1.4E-39 3.1E-44 364.7 39.5 330 20-375 583-935 (1147)
47 KOG0350 DEAD-box ATP-dependent 100.0 7.9E-41 1.7E-45 326.5 21.4 337 28-379 150-554 (620)
48 PRK00254 ski2-like helicase; P 100.0 5.9E-39 1.3E-43 351.9 36.5 332 17-375 3-399 (720)
49 KOG0334 RNA helicase [RNA proc 100.0 7.2E-40 1.6E-44 346.4 27.3 346 12-376 362-731 (997)
50 KOG4284 DEAD box protein [Tran 100.0 1.2E-39 2.5E-44 326.0 22.6 340 14-373 24-388 (980)
51 KOG0327 Translation initiation 100.0 1.3E-39 2.7E-44 310.4 21.8 341 14-376 25-381 (397)
52 KOG0344 ATP-dependent RNA heli 100.0 2.1E-39 4.5E-44 323.9 24.2 339 21-375 142-505 (593)
53 PRK01172 ski2-like helicase; P 100.0 2.9E-38 6.2E-43 345.0 34.0 337 16-375 2-389 (674)
54 PRK09751 putative ATP-dependen 100.0 6.8E-37 1.5E-41 344.7 32.2 290 58-362 1-382 (1490)
55 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.2E-36 1.1E-40 320.6 29.9 317 25-362 3-388 (844)
56 COG1202 Superfamily II helicas 100.0 1.7E-36 3.7E-41 300.4 23.7 335 15-365 194-553 (830)
57 PRK09401 reverse gyrase; Revie 100.0 8.4E-36 1.8E-40 335.1 32.6 306 24-350 67-429 (1176)
58 TIGR01587 cas3_core CRISPR-ass 100.0 2.7E-36 5.8E-41 306.5 25.1 302 55-365 1-336 (358)
59 KOG0337 ATP-dependent RNA heli 100.0 5.7E-37 1.2E-41 293.9 16.9 340 15-373 21-376 (529)
60 TIGR03158 cas3_cyano CRISPR-as 100.0 4E-35 8.8E-40 295.6 31.3 293 42-350 1-357 (357)
61 COG1111 MPH1 ERCC4-like helica 100.0 1.6E-34 3.5E-39 284.8 34.0 316 35-368 12-484 (542)
62 PHA02653 RNA helicase NPH-II; 100.0 4.4E-34 9.6E-39 304.2 32.9 300 41-370 167-519 (675)
63 PHA02558 uvsW UvsW helicase; P 100.0 1.2E-34 2.5E-39 305.1 27.7 298 37-366 113-453 (501)
64 COG1205 Distinct helicase fami 100.0 2.9E-34 6.3E-39 313.7 29.4 334 22-365 55-422 (851)
65 PRK12898 secA preprotein trans 100.0 1.9E-33 4E-38 295.0 33.3 326 26-368 92-589 (656)
66 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1E-32 2.3E-37 300.4 32.7 301 43-371 7-342 (819)
67 PRK13766 Hef nuclease; Provisi 100.0 3.3E-32 7.2E-37 302.6 37.0 313 37-367 14-481 (773)
68 PRK11664 ATP-dependent RNA hel 100.0 5.8E-33 1.2E-37 303.1 29.9 298 44-369 11-343 (812)
69 TIGR03714 secA2 accessory Sec 100.0 2.4E-32 5.3E-37 289.7 33.4 327 27-367 60-539 (762)
70 PRK09200 preprotein translocas 100.0 1.6E-32 3.5E-37 293.8 32.1 325 26-367 67-543 (790)
71 COG1204 Superfamily II helicas 100.0 2.5E-32 5.4E-37 294.6 27.3 320 20-362 14-405 (766)
72 TIGR00603 rad25 DNA repair hel 100.0 7.1E-32 1.5E-36 286.2 29.9 301 38-366 255-608 (732)
73 PRK05580 primosome assembly pr 100.0 3.1E-31 6.8E-36 286.7 35.0 313 38-368 144-552 (679)
74 TIGR01054 rgy reverse gyrase. 100.0 1.5E-31 3.2E-36 301.3 33.2 293 24-337 65-409 (1171)
75 TIGR00963 secA preprotein tran 100.0 1.1E-30 2.5E-35 275.3 32.0 325 26-368 45-520 (745)
76 PRK04914 ATP-dependent helicas 100.0 2.7E-30 5.8E-35 283.2 35.6 315 38-363 152-601 (956)
77 TIGR00595 priA primosomal prot 100.0 4.1E-31 9E-36 276.2 27.6 286 57-362 1-378 (505)
78 COG1200 RecG RecG-like helicas 100.0 1E-29 2.2E-34 261.1 34.5 326 16-366 241-592 (677)
79 KOG0354 DEAD-box like helicase 100.0 9.4E-31 2E-35 272.4 25.6 318 35-368 59-532 (746)
80 KOG0952 DNA/RNA helicase MER3/ 100.0 4E-30 8.7E-35 270.5 30.3 336 26-378 97-504 (1230)
81 COG1061 SSL2 DNA or RNA helica 100.0 1.2E-29 2.5E-34 262.2 27.4 301 36-363 34-389 (442)
82 KOG0329 ATP-dependent RNA heli 100.0 2.2E-31 4.8E-36 240.0 11.3 297 14-366 41-356 (387)
83 COG1197 Mfd Transcription-repa 100.0 2.1E-28 4.5E-33 264.4 36.1 323 17-365 574-913 (1139)
84 PRK11131 ATP-dependent RNA hel 100.0 1.8E-29 3.9E-34 280.3 28.7 299 42-370 78-416 (1294)
85 TIGR01967 DEAH_box_HrpA ATP-de 100.0 8.2E-28 1.8E-32 268.1 26.0 300 44-369 73-408 (1283)
86 PRK12906 secA preprotein trans 100.0 6.6E-27 1.4E-31 249.0 30.8 325 26-367 69-555 (796)
87 KOG0951 RNA helicase BRR2, DEA 100.0 2.7E-27 5.9E-32 252.0 25.7 331 33-379 304-716 (1674)
88 PRK09694 helicase Cas3; Provis 100.0 1.1E-25 2.5E-30 245.4 32.5 311 34-354 282-664 (878)
89 PRK12904 preprotein translocas 99.9 3.6E-25 7.8E-30 236.7 32.3 324 26-367 70-575 (830)
90 KOG0947 Cytoplasmic exosomal R 99.9 3.1E-25 6.7E-30 231.3 29.1 316 33-377 293-737 (1248)
91 PRK11448 hsdR type I restricti 99.9 3E-25 6.6E-30 248.7 30.3 322 20-353 382-801 (1123)
92 KOG0349 Putative DEAD-box RNA 99.9 1.5E-26 3.2E-31 222.8 13.2 272 79-364 287-614 (725)
93 PRK13104 secA preprotein trans 99.9 1.9E-24 4.1E-29 231.4 27.7 322 27-367 72-589 (896)
94 PLN03142 Probable chromatin-re 99.9 9.2E-24 2E-28 232.7 32.8 308 38-362 169-594 (1033)
95 KOG0950 DNA polymerase theta/e 99.9 5.4E-25 1.2E-29 231.2 20.9 337 24-379 209-625 (1008)
96 COG4581 Superfamily II RNA hel 99.9 1.4E-24 3E-29 234.9 23.9 308 32-361 114-533 (1041)
97 PRK13107 preprotein translocas 99.9 2E-22 4.2E-27 215.4 32.3 323 27-367 72-593 (908)
98 KOG0948 Nuclear exosomal RNA h 99.9 6.6E-24 1.4E-28 216.5 16.9 315 39-378 130-553 (1041)
99 COG1198 PriA Primosomal protei 99.9 3.3E-22 7.1E-27 212.4 28.4 322 37-375 197-613 (730)
100 PRK12899 secA preprotein trans 99.9 4.2E-22 9.2E-27 213.1 29.2 122 243-367 551-683 (970)
101 COG1110 Reverse gyrase [DNA re 99.9 6.9E-22 1.5E-26 208.9 28.1 292 24-337 69-417 (1187)
102 COG4098 comFA Superfamily II D 99.9 1.1E-21 2.4E-26 184.9 26.2 295 38-364 97-414 (441)
103 cd00268 DEADc DEAD-box helicas 99.9 1.7E-22 3.7E-27 188.5 19.0 183 17-215 1-196 (203)
104 TIGR00631 uvrb excinuclease AB 99.9 4.9E-21 1.1E-25 205.2 32.2 129 245-374 427-562 (655)
105 COG1643 HrpA HrpA-like helicas 99.9 1E-21 2.2E-26 211.7 24.5 302 41-369 53-391 (845)
106 KOG0922 DEAH-box RNA helicase 99.9 3.9E-22 8.6E-27 203.4 18.4 298 44-370 57-395 (674)
107 PRK12900 secA preprotein trans 99.9 1.8E-20 3.9E-25 201.1 31.3 124 243-368 581-714 (1025)
108 COG1203 CRISPR-associated heli 99.9 2.2E-21 4.8E-26 212.2 24.5 313 39-363 196-548 (733)
109 PRK05298 excinuclease ABC subu 99.9 1.8E-19 3.8E-24 194.6 33.2 108 257-365 445-557 (652)
110 PRK12326 preprotein translocas 99.9 6.7E-19 1.5E-23 184.3 32.1 324 26-367 67-549 (764)
111 KOG0385 Chromatin remodeling c 99.9 1.2E-19 2.6E-24 186.5 25.0 308 37-361 166-593 (971)
112 PF00270 DEAD: DEAD/DEAH box h 99.9 8.5E-21 1.8E-25 171.5 14.2 156 40-207 1-166 (169)
113 TIGR00348 hsdR type I site-spe 99.8 7.8E-19 1.7E-23 190.3 29.1 313 21-351 212-633 (667)
114 TIGR01407 dinG_rel DnaQ family 99.8 1.2E-18 2.6E-23 194.5 31.0 168 194-365 596-814 (850)
115 KOG4150 Predicted ATP-dependen 99.8 5.8E-20 1.3E-24 182.7 17.0 338 26-371 275-648 (1034)
116 KOG0923 mRNA splicing factor A 99.8 3.4E-19 7.5E-24 180.3 18.5 304 38-365 265-606 (902)
117 KOG0949 Predicted helicase, DE 99.8 1.7E-18 3.8E-23 181.6 24.4 154 39-206 512-674 (1330)
118 PRK13103 secA preprotein trans 99.8 9.3E-18 2E-22 179.9 28.6 322 27-367 72-593 (913)
119 COG0556 UvrB Helicase subunit 99.8 2.2E-17 4.8E-22 164.3 28.6 164 194-364 387-556 (663)
120 KOG0926 DEAH-box RNA helicase 99.8 3.7E-19 8E-24 183.2 15.8 301 44-365 262-704 (1172)
121 PRK12903 secA preprotein trans 99.8 7.3E-17 1.6E-21 171.4 33.3 323 26-367 67-541 (925)
122 COG4096 HsdR Type I site-speci 99.8 1.6E-19 3.5E-24 188.5 12.4 292 37-351 164-524 (875)
123 KOG0924 mRNA splicing factor A 99.8 7.2E-19 1.6E-23 178.3 15.9 299 39-365 357-697 (1042)
124 KOG0953 Mitochondrial RNA heli 99.8 3.6E-18 7.8E-23 170.2 20.2 282 53-377 191-488 (700)
125 cd00079 HELICc Helicase superf 99.8 2.8E-18 6.1E-23 147.9 14.3 118 244-361 12-131 (131)
126 KOG0384 Chromodomain-helicase 99.8 1.2E-17 2.6E-22 179.5 21.4 310 37-361 369-805 (1373)
127 PRK07246 bifunctional ATP-depe 99.8 1.3E-16 2.9E-21 175.9 29.6 168 195-365 575-783 (820)
128 KOG0387 Transcription-coupled 99.8 2.7E-17 5.8E-22 170.1 21.5 309 37-361 204-652 (923)
129 KOG0390 DNA repair protein, SN 99.8 3.6E-17 7.7E-22 173.2 22.3 311 38-362 238-702 (776)
130 CHL00122 secA preprotein trans 99.8 4.8E-16 1E-20 166.2 30.1 281 26-325 65-491 (870)
131 PF00271 Helicase_C: Helicase 99.8 2.1E-18 4.6E-23 134.7 8.8 78 276-353 1-78 (78)
132 KOG0389 SNF2 family DNA-depend 99.7 1.4E-16 3E-21 164.7 20.8 317 39-366 400-889 (941)
133 KOG0920 ATP-dependent RNA heli 99.7 1.9E-16 4.1E-21 170.5 21.2 304 39-369 174-548 (924)
134 PRK08074 bifunctional ATP-depe 99.7 4.2E-15 9.1E-20 166.9 32.2 170 195-365 674-893 (928)
135 PRK12902 secA preprotein trans 99.7 1.5E-14 3.3E-19 154.4 34.5 283 26-325 74-506 (939)
136 KOG0925 mRNA splicing factor A 99.7 1.1E-15 2.4E-20 150.2 22.8 320 13-365 23-387 (699)
137 KOG1123 RNA polymerase II tran 99.7 2.5E-17 5.5E-22 162.1 11.4 297 37-363 301-648 (776)
138 PRK14873 primosome assembly pr 99.7 2.3E-14 4.9E-19 153.7 28.2 290 58-375 165-548 (665)
139 TIGR03117 cas_csf4 CRISPR-asso 99.7 3.7E-14 8.1E-19 150.2 28.6 168 195-365 373-616 (636)
140 smart00487 DEXDc DEAD-like hel 99.6 4.9E-15 1.1E-19 136.5 15.5 167 34-215 4-182 (201)
141 KOG1000 Chromatin remodeling p 99.6 1.3E-14 2.9E-19 143.1 18.4 338 3-363 165-599 (689)
142 PRK11747 dinG ATP-dependent DN 99.6 4.3E-13 9.4E-18 146.3 31.4 165 195-365 458-674 (697)
143 smart00490 HELICc helicase sup 99.6 2.1E-15 4.5E-20 118.5 9.2 81 273-353 2-82 (82)
144 COG1199 DinG Rad3-related DNA 99.6 1.5E-13 3.4E-18 150.5 25.7 166 195-364 405-616 (654)
145 PF04851 ResIII: Type III rest 99.6 1.7E-15 3.6E-20 138.5 6.1 156 38-204 3-183 (184)
146 KOG0951 RNA helicase BRR2, DEA 99.6 6E-14 1.3E-18 151.3 18.4 309 38-379 1143-1508(1674)
147 COG4889 Predicted helicase [Ge 99.6 6.6E-15 1.4E-19 153.3 10.0 310 36-353 159-573 (1518)
148 KOG0392 SNF2 family DNA-depend 99.6 3.4E-13 7.3E-18 145.3 21.5 306 38-361 975-1448(1549)
149 TIGR00604 rad3 DNA repair heli 99.5 2.6E-12 5.7E-17 141.2 28.6 165 195-363 443-672 (705)
150 KOG0386 Chromatin remodeling c 99.5 9.7E-14 2.1E-18 147.2 16.1 324 37-376 393-847 (1157)
151 PRK12901 secA preprotein trans 99.5 4.5E-12 9.7E-17 137.2 25.5 121 245-367 613-743 (1112)
152 cd00046 DEXDc DEAD-like helica 99.4 1.2E-12 2.5E-17 113.5 11.0 136 54-203 1-144 (144)
153 KOG0388 SNF2 family DNA-depend 99.4 3.2E-11 6.9E-16 123.8 18.7 105 257-361 1043-1148(1185)
154 KOG1002 Nucleotide excision re 99.3 1.6E-10 3.5E-15 114.5 20.2 105 260-364 640-748 (791)
155 KOG4439 RNA polymerase II tran 99.3 2.3E-10 5.1E-15 117.7 20.3 90 272-361 760-852 (901)
156 KOG0391 SNF2 family DNA-depend 99.3 1.6E-10 3.5E-15 124.1 19.7 121 257-377 1275-1397(1958)
157 TIGR02562 cas3_yersinia CRISPR 99.3 3E-10 6.6E-15 123.8 20.3 91 261-354 759-881 (1110)
158 COG0653 SecA Preprotein transl 99.2 2.2E-09 4.8E-14 115.1 22.5 322 28-367 71-547 (822)
159 COG0553 HepA Superfamily II DN 99.1 3.5E-09 7.5E-14 120.3 22.7 103 260-362 713-817 (866)
160 PF02399 Herpes_ori_bp: Origin 99.1 1E-08 2.2E-13 109.4 21.5 282 55-365 51-388 (824)
161 PF00176 SNF2_N: SNF2 family N 99.1 5.3E-10 1.2E-14 110.5 11.0 161 42-220 1-189 (299)
162 KOG1015 Transcription regulato 99.0 9.3E-09 2E-13 109.0 16.6 104 258-361 1142-1271(1567)
163 COG0610 Type I site-specific r 99.0 2.6E-07 5.7E-12 104.1 27.8 282 54-352 274-636 (962)
164 PF06862 DUF1253: Protein of u 98.9 6.1E-07 1.3E-11 91.3 26.2 219 156-375 159-425 (442)
165 PF07652 Flavi_DEAD: Flaviviru 98.9 5.7E-10 1.2E-14 94.9 0.7 132 53-207 4-140 (148)
166 PF07517 SecA_DEAD: SecA DEAD- 98.7 1.2E-07 2.7E-12 90.6 12.4 135 26-171 66-210 (266)
167 smart00488 DEXDc2 DEAD-like he 98.5 6.9E-07 1.5E-11 87.6 11.9 76 34-110 5-93 (289)
168 smart00489 DEXDc3 DEAD-like he 98.5 6.9E-07 1.5E-11 87.6 11.9 76 34-110 5-93 (289)
169 KOG2340 Uncharacterized conser 98.4 8E-06 1.7E-10 82.5 14.0 117 259-375 553-678 (698)
170 TIGR00596 rad1 DNA repair prot 98.3 4E-05 8.6E-10 84.5 19.7 80 131-219 8-93 (814)
171 PF13307 Helicase_C_2: Helicas 98.3 2.8E-06 6E-11 76.4 8.6 111 251-364 3-149 (167)
172 KOG0952 DNA/RNA helicase MER3/ 98.3 4.3E-08 9.3E-13 105.6 -3.6 219 38-278 927-1173(1230)
173 PRK15483 type III restriction- 98.3 1.7E-05 3.6E-10 87.7 15.6 45 308-352 501-545 (986)
174 KOG0921 Dosage compensation co 98.2 1.1E-05 2.4E-10 86.0 11.6 107 258-365 643-774 (1282)
175 PF13872 AAA_34: P-loop contai 98.0 7.2E-05 1.6E-09 72.0 11.6 163 38-207 37-224 (303)
176 KOG1802 RNA helicase nonsense 97.9 8.7E-05 1.9E-09 77.1 11.7 79 33-111 405-487 (935)
177 KOG1016 Predicted DNA helicase 97.9 0.0023 5E-08 67.8 21.6 110 259-368 720-850 (1387)
178 COG3587 Restriction endonuclea 97.8 0.00053 1.1E-08 73.6 16.0 71 307-377 482-565 (985)
179 PF13604 AAA_30: AAA domain; P 97.8 7.9E-05 1.7E-09 68.8 8.4 56 38-93 1-61 (196)
180 KOG1803 DNA helicase [Replicat 97.7 7.1E-05 1.5E-09 77.4 7.7 63 37-99 184-250 (649)
181 PF13086 AAA_11: AAA domain; P 97.7 0.0001 2.2E-09 69.6 7.1 63 38-100 1-75 (236)
182 PF13245 AAA_19: Part of AAA d 97.5 0.00031 6.6E-09 54.0 6.1 53 46-98 2-62 (76)
183 PF02562 PhoH: PhoH-like prote 97.5 0.00019 4.2E-09 66.1 5.7 54 37-90 3-61 (205)
184 PRK10536 hypothetical protein; 97.4 0.002 4.3E-08 61.2 12.2 57 34-90 55-116 (262)
185 smart00492 HELICc3 helicase su 97.4 0.0015 3.3E-08 56.7 10.5 76 288-363 27-136 (141)
186 KOG1805 DNA replication helica 97.4 0.00095 2.1E-08 72.6 10.9 127 38-172 669-810 (1100)
187 TIGR01448 recD_rel helicase, p 97.3 0.0021 4.6E-08 71.0 12.5 62 30-92 316-382 (720)
188 smart00491 HELICc2 helicase su 97.3 0.002 4.4E-08 56.0 9.6 93 271-363 4-137 (142)
189 PF09848 DUF2075: Uncharacteri 97.3 0.0014 3E-08 66.5 9.7 45 56-100 4-53 (352)
190 PF12340 DUF3638: Protein of u 97.2 0.0091 2E-07 55.6 13.1 123 16-143 4-143 (229)
191 PF13401 AAA_22: AAA domain; P 97.2 0.0011 2.4E-08 56.5 6.7 19 53-71 4-22 (131)
192 PRK10875 recD exonuclease V su 97.2 0.0053 1.1E-07 66.2 13.2 77 23-99 136-220 (615)
193 TIGR01447 recD exodeoxyribonuc 97.1 0.0048 1E-07 66.4 12.5 69 30-98 137-213 (586)
194 PRK08181 transposase; Validate 97.1 0.0094 2E-07 57.6 12.8 55 39-93 88-148 (269)
195 COG1875 NYN ribonuclease and A 97.0 0.0051 1.1E-07 60.4 10.1 63 30-92 220-290 (436)
196 PRK12723 flagellar biosynthesi 97.0 0.024 5.1E-07 57.8 15.2 124 54-216 175-310 (388)
197 TIGR00376 DNA helicase, putati 96.9 0.0039 8.5E-08 67.9 9.8 74 37-110 156-233 (637)
198 KOG0383 Predicted helicase [Ge 96.9 0.00039 8.4E-09 74.5 1.5 64 257-321 630-696 (696)
199 KOG1131 RNA polymerase II tran 96.9 0.008 1.7E-07 61.3 10.5 68 33-100 11-89 (755)
200 PRK06526 transposase; Provisio 96.8 0.004 8.6E-08 59.8 8.1 46 48-93 93-140 (254)
201 KOG1132 Helicase of the DEAD s 96.8 0.0032 6.9E-08 68.0 7.7 76 34-110 18-144 (945)
202 PF00448 SRP54: SRP54-type pro 96.8 0.02 4.4E-07 52.7 12.0 127 56-215 4-137 (196)
203 cd00009 AAA The AAA+ (ATPases 96.8 0.013 2.8E-07 50.3 10.3 19 53-71 19-37 (151)
204 COG2256 MGS1 ATPase related to 96.8 0.0054 1.2E-07 61.1 8.4 41 47-87 39-82 (436)
205 PF13871 Helicase_C_4: Helicas 96.8 0.0061 1.3E-07 58.6 8.4 59 299-357 52-118 (278)
206 PRK08727 hypothetical protein; 96.7 0.01 2.2E-07 56.4 9.9 15 55-69 43-57 (233)
207 PRK14956 DNA polymerase III su 96.7 0.016 3.6E-07 60.1 11.7 20 55-74 42-61 (484)
208 PRK12377 putative replication 96.6 0.013 2.8E-07 56.0 9.7 41 54-94 102-144 (248)
209 PRK06893 DNA replication initi 96.6 0.0092 2E-07 56.5 8.3 47 159-208 92-139 (229)
210 cd01122 GP4d_helicase GP4d_hel 96.5 0.014 3.1E-07 56.7 9.7 120 50-172 27-154 (271)
211 PRK06921 hypothetical protein; 96.5 0.05 1.1E-06 52.7 13.3 41 53-93 117-160 (266)
212 PRK07952 DNA replication prote 96.5 0.043 9.4E-07 52.3 12.3 53 41-93 79-141 (244)
213 smart00382 AAA ATPases associa 96.5 0.014 3.1E-07 49.5 8.4 38 53-90 2-42 (148)
214 PRK08084 DNA replication initi 96.5 0.014 3E-07 55.5 8.9 17 54-70 46-62 (235)
215 PF05970 PIF1: PIF1-like helic 96.5 0.0096 2.1E-07 60.5 8.2 54 38-91 1-63 (364)
216 PRK04296 thymidine kinase; Pro 96.4 0.009 2E-07 54.8 7.1 32 55-86 4-38 (190)
217 TIGR01073 pcrA ATP-dependent D 96.4 0.29 6.3E-06 54.7 20.3 63 37-101 3-72 (726)
218 cd01124 KaiC KaiC is a circadi 96.4 0.018 3.9E-07 52.4 8.8 48 56-104 2-52 (187)
219 PF00580 UvrD-helicase: UvrD/R 96.3 0.0056 1.2E-07 60.6 5.6 60 39-100 1-67 (315)
220 PF05621 TniB: Bacterial TniB 96.3 0.03 6.5E-07 54.4 10.0 43 158-202 145-188 (302)
221 PRK14974 cell division protein 96.3 0.27 5.8E-06 49.2 16.8 51 158-212 222-273 (336)
222 PLN03025 replication factor C 96.2 0.046 1E-06 54.5 11.4 48 158-211 99-146 (319)
223 PF13173 AAA_14: AAA domain 96.2 0.03 6.4E-07 47.7 8.4 40 159-206 62-101 (128)
224 PF01695 IstB_IS21: IstB-like 96.2 0.0066 1.4E-07 55.0 4.5 42 52-93 46-89 (178)
225 PRK06835 DNA replication prote 96.1 0.077 1.7E-06 52.9 12.4 41 53-93 183-225 (329)
226 PRK11889 flhF flagellar biosyn 96.1 0.17 3.7E-06 51.3 14.4 55 158-216 320-375 (436)
227 KOG1133 Helicase of the DEAD s 96.1 0.13 2.9E-06 54.6 14.1 116 244-363 612-778 (821)
228 cd01120 RecA-like_NTPases RecA 96.1 0.12 2.6E-06 45.3 12.3 35 56-90 2-39 (165)
229 PRK08116 hypothetical protein; 96.1 0.15 3.3E-06 49.5 13.7 39 55-93 116-156 (268)
230 PRK05703 flhF flagellar biosyn 96.0 0.25 5.4E-06 51.2 16.0 55 158-216 299-355 (424)
231 COG1419 FlhF Flagellar GTP-bin 96.0 0.19 4.1E-06 50.8 14.2 57 159-219 282-339 (407)
232 COG1484 DnaC DNA replication p 96.0 0.033 7.2E-07 53.5 8.6 63 35-97 80-151 (254)
233 PRK05973 replicative DNA helic 96.0 0.19 4.2E-06 47.5 13.5 86 17-104 20-117 (237)
234 PRK13889 conjugal transfer rel 95.8 0.13 2.7E-06 58.6 13.7 54 38-91 346-403 (988)
235 PRK14949 DNA polymerase III su 95.8 0.073 1.6E-06 59.1 11.4 46 157-208 118-163 (944)
236 COG1110 Reverse gyrase [DNA re 95.8 0.042 9.1E-07 60.7 9.3 80 240-319 107-192 (1187)
237 PTZ00112 origin recognition co 95.8 0.27 5.9E-06 54.4 15.4 32 39-70 759-798 (1164)
238 PRK14722 flhF flagellar biosyn 95.8 0.13 2.9E-06 51.9 12.4 53 159-215 216-269 (374)
239 TIGR02928 orc1/cdc6 family rep 95.8 0.12 2.6E-06 52.5 12.5 17 54-70 41-57 (365)
240 PRK14959 DNA polymerase III su 95.8 0.088 1.9E-06 56.6 11.5 46 157-208 118-163 (624)
241 PRK06645 DNA polymerase III su 95.8 0.076 1.6E-06 56.1 10.9 21 54-74 44-64 (507)
242 PRK13341 recombination factor 95.7 0.1 2.2E-06 57.6 12.0 20 55-74 54-73 (725)
243 PRK14958 DNA polymerase III su 95.7 0.084 1.8E-06 56.0 10.9 45 156-206 117-161 (509)
244 PRK13342 recombination factor 95.6 0.086 1.9E-06 54.6 10.7 19 55-73 38-56 (413)
245 PRK14712 conjugal transfer nic 95.6 0.039 8.5E-07 65.1 8.7 65 38-106 835-908 (1623)
246 KOG0989 Replication factor C, 95.6 0.051 1.1E-06 52.4 7.9 35 42-76 40-80 (346)
247 PRK07003 DNA polymerase III su 95.5 0.064 1.4E-06 58.5 9.5 45 157-207 118-162 (830)
248 PRK04195 replication factor C 95.5 0.1 2.2E-06 55.3 11.1 41 159-202 99-139 (482)
249 PF05496 RuvB_N: Holliday junc 95.5 0.07 1.5E-06 49.6 8.4 21 55-75 52-72 (233)
250 PRK12422 chromosomal replicati 95.5 0.12 2.7E-06 53.8 11.3 49 158-209 202-250 (445)
251 TIGR02881 spore_V_K stage V sp 95.5 0.072 1.6E-06 51.5 9.1 19 54-72 43-61 (261)
252 KOG0739 AAA+-type ATPase [Post 95.5 0.27 5.8E-06 47.3 12.3 120 48-213 156-287 (439)
253 COG1474 CDC6 Cdc6-related prot 95.5 0.34 7.5E-06 49.1 14.1 17 54-70 43-59 (366)
254 PRK05580 primosome assembly pr 95.5 0.084 1.8E-06 58.2 10.4 76 258-334 190-266 (679)
255 PRK08769 DNA polymerase III su 95.5 0.067 1.4E-06 53.1 8.7 35 36-70 2-43 (319)
256 PRK10917 ATP-dependent DNA hel 95.4 0.04 8.7E-07 60.9 7.8 75 257-331 309-388 (681)
257 cd00984 DnaB_C DnaB helicase C 95.4 0.07 1.5E-06 50.8 8.6 147 52-202 12-172 (242)
258 KOG0741 AAA+-type ATPase [Post 95.4 0.089 1.9E-06 54.3 9.4 33 55-87 540-573 (744)
259 PRK12323 DNA polymerase III su 95.4 0.11 2.3E-06 56.0 10.4 51 156-212 122-172 (700)
260 PF00004 AAA: ATPase family as 95.4 0.15 3.2E-06 43.1 9.8 18 56-73 1-18 (132)
261 PRK00411 cdc6 cell division co 95.4 0.39 8.4E-06 49.4 14.6 17 54-70 56-72 (394)
262 PRK13709 conjugal transfer nic 95.4 0.059 1.3E-06 64.4 9.4 66 38-107 967-1041(1747)
263 PRK05707 DNA polymerase III su 95.4 0.16 3.5E-06 50.7 11.2 32 39-70 4-39 (328)
264 PRK14964 DNA polymerase III su 95.4 0.19 4.1E-06 52.8 12.0 49 157-211 115-163 (491)
265 PF00308 Bac_DnaA: Bacterial d 95.3 0.11 2.4E-06 48.7 9.5 56 158-215 97-155 (219)
266 PRK12724 flagellar biosynthesi 95.3 0.69 1.5E-05 47.5 15.5 122 55-216 225-357 (432)
267 PRK05642 DNA replication initi 95.3 0.1 2.2E-06 49.5 9.2 16 54-69 46-61 (234)
268 PRK13826 Dtr system oriT relax 95.3 0.14 3.1E-06 58.6 11.5 69 37-109 380-453 (1102)
269 TIGR02760 TraI_TIGR conjugativ 95.2 0.053 1.1E-06 66.3 8.6 65 37-105 1018-1091(1960)
270 PRK08903 DnaA regulatory inact 95.2 0.13 2.9E-06 48.4 9.8 17 53-69 42-58 (227)
271 PRK14960 DNA polymerase III su 95.2 0.12 2.7E-06 55.6 10.2 45 157-207 117-161 (702)
272 TIGR02760 TraI_TIGR conjugativ 95.2 2.1 4.6E-05 52.9 21.9 202 38-279 429-647 (1960)
273 cd01121 Sms Sms (bacterial rad 95.2 0.17 3.6E-06 51.5 10.7 57 46-103 70-134 (372)
274 PRK14962 DNA polymerase III su 95.1 0.14 3E-06 53.8 10.3 17 56-72 39-55 (472)
275 PRK09183 transposase/IS protei 95.1 0.21 4.6E-06 48.2 10.8 42 50-92 99-143 (259)
276 TIGR00595 priA primosomal prot 95.1 0.12 2.5E-06 55.0 9.7 76 258-334 25-101 (505)
277 TIGR03015 pepcterm_ATPase puta 95.1 0.29 6.2E-06 47.3 11.8 32 41-72 26-62 (269)
278 PRK12727 flagellar biosynthesi 95.1 0.76 1.6E-05 48.5 15.2 54 158-215 428-481 (559)
279 PRK14961 DNA polymerase III su 95.1 0.16 3.4E-06 51.7 10.3 17 56-72 41-57 (363)
280 PRK06731 flhF flagellar biosyn 95.0 0.82 1.8E-05 44.2 14.6 127 54-216 76-209 (270)
281 PRK00149 dnaA chromosomal repl 95.0 0.18 3.8E-06 53.0 10.8 18 54-71 149-166 (450)
282 PRK07764 DNA polymerase III su 95.0 0.12 2.7E-06 57.8 9.8 44 157-206 119-162 (824)
283 PRK14951 DNA polymerase III su 95.0 0.18 3.8E-06 54.6 10.7 46 157-208 123-168 (618)
284 KOG2028 ATPase related to the 94.9 0.13 2.8E-06 50.8 8.6 21 55-75 164-184 (554)
285 KOG1001 Helicase-like transcri 94.9 0.1 2.3E-06 56.8 9.0 137 56-217 155-306 (674)
286 cd01126 TraG_VirD4 The TraG/Tr 94.9 0.02 4.3E-07 58.8 3.4 56 55-110 1-57 (384)
287 PF03796 DnaB_C: DnaB-like hel 94.9 0.11 2.3E-06 50.2 8.2 144 55-203 21-180 (259)
288 PRK07994 DNA polymerase III su 94.9 0.22 4.8E-06 54.1 11.2 46 156-207 117-162 (647)
289 PRK08691 DNA polymerase III su 94.9 0.21 4.5E-06 54.3 11.0 45 157-207 118-162 (709)
290 PRK14873 primosome assembly pr 94.8 0.2 4.4E-06 54.8 10.9 76 258-334 188-265 (665)
291 PRK05563 DNA polymerase III su 94.8 0.17 3.7E-06 54.4 10.3 47 156-208 117-163 (559)
292 PHA02544 44 clamp loader, smal 94.8 0.45 9.8E-06 47.3 12.7 43 159-206 101-143 (316)
293 TIGR00362 DnaA chromosomal rep 94.8 0.25 5.5E-06 51.1 11.2 16 55-70 138-153 (405)
294 PRK07133 DNA polymerase III su 94.8 0.22 4.7E-06 54.6 10.8 43 157-205 117-159 (725)
295 TIGR03420 DnaA_homol_Hda DnaA 94.8 0.16 3.5E-06 47.7 8.9 19 53-71 38-56 (226)
296 COG1222 RPT1 ATP-dependent 26S 94.7 0.35 7.5E-06 47.9 10.9 38 54-92 186-223 (406)
297 PRK06904 replicative DNA helic 94.7 0.74 1.6E-05 48.5 14.3 144 55-201 223-382 (472)
298 TIGR03878 thermo_KaiC_2 KaiC d 94.7 0.22 4.8E-06 48.0 9.7 51 53-103 36-92 (259)
299 TIGR02655 circ_KaiC circadian 94.7 0.12 2.7E-06 54.6 8.6 109 45-171 250-366 (484)
300 PRK11823 DNA repair protein Ra 94.6 0.33 7.1E-06 50.8 11.5 57 46-103 68-132 (446)
301 PRK08760 replicative DNA helic 94.6 0.14 3E-06 53.9 8.7 144 55-201 231-387 (476)
302 PRK14957 DNA polymerase III su 94.6 0.23 4.9E-06 53.0 10.2 42 156-203 117-158 (546)
303 PRK14952 DNA polymerase III su 94.6 0.27 5.9E-06 52.9 10.8 49 157-211 117-165 (584)
304 TIGR02768 TraA_Ti Ti-type conj 94.5 1.3 2.9E-05 49.4 16.5 54 38-91 352-409 (744)
305 PRK05748 replicative DNA helic 94.5 0.21 4.6E-06 52.3 9.7 147 54-203 204-365 (448)
306 PRK06067 flagellar accessory p 94.5 2.3 5.1E-05 40.1 16.1 102 53-172 25-134 (234)
307 PRK08939 primosomal protein Dn 94.4 0.15 3.3E-06 50.4 8.1 17 53-69 156-172 (306)
308 PF02534 T4SS-DNA_transf: Type 94.4 0.032 7E-07 58.9 3.5 56 55-110 46-102 (469)
309 TIGR03600 phage_DnaB phage rep 94.4 0.27 5.8E-06 51.2 10.3 146 53-202 194-353 (421)
310 PF06745 KaiC: KaiC; InterPro 94.4 0.2 4.4E-06 47.1 8.6 130 53-202 19-159 (226)
311 TIGR00643 recG ATP-dependent D 94.4 0.1 2.3E-06 57.1 7.4 74 258-331 284-362 (630)
312 PRK14948 DNA polymerase III su 94.4 0.31 6.7E-06 53.1 10.9 19 54-72 39-57 (620)
313 PRK10416 signal recognition pa 94.3 1.8 4E-05 43.0 15.5 54 157-214 195-255 (318)
314 PRK05595 replicative DNA helic 94.3 0.18 3.9E-06 52.7 8.8 155 45-202 189-360 (444)
315 PRK08533 flagellar accessory p 94.3 0.56 1.2E-05 44.4 11.3 51 52-103 23-76 (230)
316 COG1444 Predicted P-loop ATPas 94.3 0.94 2E-05 49.7 14.0 149 20-204 197-357 (758)
317 PF03354 Terminase_1: Phage Te 94.2 0.29 6.4E-06 51.7 10.2 61 41-101 1-77 (477)
318 PHA02533 17 large terminase pr 94.2 1.4 3E-05 47.1 15.2 63 38-100 59-126 (534)
319 KOG0298 DEAD box-containing he 94.2 0.05 1.1E-06 61.4 4.4 148 53-215 374-561 (1394)
320 PRK14087 dnaA chromosomal repl 94.1 0.52 1.1E-05 49.3 11.7 43 55-98 143-190 (450)
321 PRK00771 signal recognition pa 94.1 1.8 3.9E-05 45.0 15.4 48 159-210 176-224 (437)
322 PRK09111 DNA polymerase III su 94.1 0.6 1.3E-05 50.5 12.3 44 157-206 131-174 (598)
323 TIGR03877 thermo_KaiC_1 KaiC d 94.1 0.075 1.6E-06 50.6 5.0 51 53-104 21-74 (237)
324 PRK14953 DNA polymerase III su 94.0 0.57 1.2E-05 49.5 11.8 41 157-203 118-158 (486)
325 PRK08840 replicative DNA helic 94.0 0.67 1.4E-05 48.7 12.2 145 54-201 218-377 (464)
326 PRK13897 type IV secretion sys 94.0 0.049 1.1E-06 58.7 3.9 58 54-111 159-217 (606)
327 PRK14955 DNA polymerase III su 94.0 0.52 1.1E-05 48.6 11.2 45 157-207 126-170 (397)
328 PRK07940 DNA polymerase III su 93.9 0.26 5.6E-06 50.5 8.8 51 156-212 115-165 (394)
329 PRK12402 replication factor C 93.9 0.64 1.4E-05 46.5 11.7 18 55-72 38-55 (337)
330 KOG1133 Helicase of the DEAD s 93.9 0.074 1.6E-06 56.4 4.8 43 33-75 9-56 (821)
331 PRK06964 DNA polymerase III su 93.9 0.57 1.2E-05 47.0 10.9 33 39-71 2-39 (342)
332 PRK14086 dnaA chromosomal repl 93.9 0.46 1E-05 51.0 10.8 42 55-96 316-361 (617)
333 PRK06871 DNA polymerase III su 93.8 0.3 6.5E-06 48.6 8.8 52 155-212 104-155 (325)
334 PRK14969 DNA polymerase III su 93.8 0.36 7.8E-06 51.6 10.0 19 55-73 40-58 (527)
335 PRK14721 flhF flagellar biosyn 93.8 1.5 3.2E-05 45.3 14.0 55 158-216 269-324 (420)
336 PRK09165 replicative DNA helic 93.8 0.3 6.4E-06 51.8 9.2 144 55-201 219-391 (497)
337 PRK14088 dnaA chromosomal repl 93.8 0.78 1.7E-05 47.9 12.2 17 55-71 132-148 (440)
338 PRK05896 DNA polymerase III su 93.8 0.61 1.3E-05 50.1 11.5 44 158-207 119-162 (605)
339 PTZ00454 26S protease regulato 93.7 0.73 1.6E-05 47.3 11.7 22 53-74 179-200 (398)
340 TIGR01425 SRP54_euk signal rec 93.7 2.2 4.8E-05 44.1 15.0 120 56-209 103-230 (429)
341 PF13177 DNA_pol3_delta2: DNA 93.6 0.59 1.3E-05 41.5 9.6 50 157-212 101-150 (162)
342 CHL00176 ftsH cell division pr 93.6 1.1 2.4E-05 48.9 13.3 20 54-73 217-236 (638)
343 TIGR00064 ftsY signal recognit 93.6 3.5 7.7E-05 40.0 15.6 50 55-104 74-129 (272)
344 TIGR01243 CDC48 AAA family ATP 93.5 0.79 1.7E-05 51.3 12.5 32 54-85 488-519 (733)
345 PRK08006 replicative DNA helic 93.5 0.93 2E-05 47.7 12.2 143 55-201 226-384 (471)
346 PRK14950 DNA polymerase III su 93.5 0.67 1.5E-05 50.3 11.5 41 157-203 119-159 (585)
347 TIGR01241 FtsH_fam ATP-depende 93.5 0.75 1.6E-05 48.9 11.7 19 54-72 89-107 (495)
348 TIGR00665 DnaB replicative DNA 93.3 0.43 9.4E-06 49.8 9.5 142 54-202 196-354 (434)
349 PRK10919 ATP-dependent DNA hel 93.3 0.15 3.3E-06 56.2 6.4 61 38-100 2-69 (672)
350 COG1198 PriA Primosomal protei 93.2 0.27 5.8E-06 53.9 7.9 83 246-331 235-318 (730)
351 PRK05636 replicative DNA helic 93.2 0.37 8E-06 51.1 8.7 151 46-201 254-423 (505)
352 PHA02542 41 41 helicase; Provi 93.2 0.67 1.5E-05 48.7 10.5 154 44-202 176-353 (473)
353 PRK11034 clpA ATP-dependent Cl 93.2 0.67 1.5E-05 51.6 11.0 19 53-71 207-225 (758)
354 PRK13850 type IV secretion sys 93.2 0.093 2E-06 57.3 4.3 57 54-110 140-197 (670)
355 TIGR00635 ruvB Holliday juncti 93.2 0.8 1.7E-05 45.2 10.7 18 54-71 31-48 (305)
356 KOG0738 AAA+-type ATPase [Post 93.2 1.3 2.9E-05 44.3 11.7 17 54-70 246-262 (491)
357 TIGR02639 ClpA ATP-dependent C 93.2 0.54 1.2E-05 52.5 10.4 18 54-71 204-221 (731)
358 PRK06090 DNA polymerase III su 93.1 0.4 8.8E-06 47.5 8.3 52 156-213 106-157 (319)
359 PRK14963 DNA polymerase III su 93.1 0.48 1E-05 50.2 9.4 17 56-72 39-55 (504)
360 PRK06321 replicative DNA helic 93.0 0.72 1.6E-05 48.5 10.5 155 45-202 214-388 (472)
361 KOG1513 Nuclear helicase MOP-3 93.0 0.48 1E-05 51.3 8.9 166 38-208 264-459 (1300)
362 PRK04328 hypothetical protein; 93.0 0.068 1.5E-06 51.3 2.7 50 53-103 23-75 (249)
363 COG0464 SpoVK ATPases of the A 93.0 1.1 2.3E-05 47.7 12.0 39 54-93 277-315 (494)
364 PRK14965 DNA polymerase III su 93.0 0.6 1.3E-05 50.5 10.1 48 157-210 118-165 (576)
365 TIGR00959 ffh signal recogniti 92.9 3.9 8.5E-05 42.4 15.5 53 55-107 101-160 (428)
366 PRK09354 recA recombinase A; P 92.9 0.59 1.3E-05 46.8 9.2 96 46-171 47-151 (349)
367 PRK08506 replicative DNA helic 92.9 0.47 1E-05 50.0 8.9 155 44-202 179-351 (472)
368 PRK10867 signal recognition pa 92.8 3.4 7.3E-05 42.9 14.9 51 56-106 103-160 (433)
369 TIGR01243 CDC48 AAA family ATP 92.8 0.61 1.3E-05 52.2 10.3 20 53-72 212-231 (733)
370 TIGR00580 mfd transcription-re 92.8 0.28 6.1E-06 55.7 7.6 74 258-331 500-578 (926)
371 PHA03333 putative ATPase subun 92.8 2.8 6E-05 45.5 14.3 147 50-209 184-338 (752)
372 TIGR01075 uvrD DNA helicase II 92.6 0.18 4E-06 56.1 5.8 63 37-101 3-72 (715)
373 PF13481 AAA_25: AAA domain; P 92.6 1 2.2E-05 41.0 9.8 118 52-179 31-162 (193)
374 PHA03368 DNA packaging termina 92.5 1.7 3.7E-05 46.9 12.4 75 23-101 228-307 (738)
375 PRK12726 flagellar biosynthesi 92.5 3.4 7.4E-05 41.9 13.9 54 157-214 284-338 (407)
376 PRK13822 conjugal transfer cou 92.5 0.13 2.9E-06 55.9 4.4 58 54-111 225-283 (641)
377 PRK13833 conjugal transfer pro 92.5 0.33 7.2E-06 48.2 6.8 52 39-90 129-186 (323)
378 PRK08699 DNA polymerase III su 92.5 0.89 1.9E-05 45.4 9.9 33 39-71 2-39 (325)
379 PRK11773 uvrD DNA-dependent he 92.5 0.2 4.3E-06 55.9 5.8 63 37-101 8-77 (721)
380 CHL00181 cbbX CbbX; Provisiona 92.5 0.92 2E-05 44.5 9.8 20 54-73 60-79 (287)
381 TIGR02397 dnaX_nterm DNA polym 92.4 1.3 2.8E-05 44.8 11.3 16 55-70 38-53 (355)
382 PRK14723 flhF flagellar biosyn 92.4 2.7 6E-05 46.5 14.2 53 159-215 264-317 (767)
383 KOG0991 Replication factor C, 92.4 0.42 9E-06 44.5 6.7 46 156-207 111-156 (333)
384 cd03115 SRP The signal recogni 92.4 7.5 0.00016 34.6 15.1 48 158-209 82-130 (173)
385 KOG0701 dsRNA-specific nucleas 92.3 0.1 2.2E-06 61.2 3.3 95 259-353 293-399 (1606)
386 PRK06995 flhF flagellar biosyn 92.3 3.4 7.4E-05 43.4 14.2 55 158-216 334-389 (484)
387 COG2255 RuvB Holliday junction 92.3 0.34 7.4E-06 46.4 6.2 20 55-74 54-73 (332)
388 PRK03992 proteasome-activating 92.2 0.96 2.1E-05 46.5 10.0 20 54-73 166-185 (389)
389 TIGR02767 TraG-Ti Ti-type conj 92.2 0.18 3.9E-06 54.6 4.9 57 54-110 212-270 (623)
390 cd00983 recA RecA is a bacter 92.1 0.7 1.5E-05 45.9 8.5 96 46-171 42-146 (325)
391 KOG0734 AAA+-type ATPase conta 92.1 1.5 3.3E-05 45.7 10.9 53 157-209 395-453 (752)
392 PRK07993 DNA polymerase III su 92.1 0.91 2E-05 45.5 9.5 135 39-213 3-157 (334)
393 TIGR02880 cbbX_cfxQ probable R 92.1 0.97 2.1E-05 44.2 9.5 17 54-70 59-75 (284)
394 TIGR03880 KaiC_arch_3 KaiC dom 92.0 1.7 3.8E-05 40.7 10.9 50 53-103 16-68 (224)
395 PRK09112 DNA polymerase III su 91.9 3.4 7.3E-05 41.7 13.3 44 156-205 139-182 (351)
396 PF05876 Terminase_GpA: Phage 91.9 0.79 1.7E-05 49.3 9.3 59 38-96 16-80 (557)
397 TIGR02012 tigrfam_recA protein 91.9 0.76 1.6E-05 45.6 8.5 96 46-171 42-146 (321)
398 COG1219 ClpX ATP-dependent pro 91.8 0.17 3.7E-06 49.1 3.6 19 54-72 98-116 (408)
399 COG4962 CpaF Flp pilus assembl 91.7 0.4 8.7E-06 47.3 6.2 57 34-90 153-212 (355)
400 PF05127 Helicase_RecD: Helica 91.7 0.19 4.2E-06 45.2 3.7 116 57-204 1-124 (177)
401 PRK06620 hypothetical protein; 91.7 0.61 1.3E-05 43.6 7.3 18 54-71 45-62 (214)
402 PRK00080 ruvB Holliday junctio 91.7 0.74 1.6E-05 46.1 8.4 19 54-72 52-70 (328)
403 PRK07004 replicative DNA helic 91.7 1 2.2E-05 47.4 9.6 143 54-201 214-372 (460)
404 TIGR01074 rep ATP-dependent DN 91.7 0.38 8.3E-06 53.2 6.9 61 38-100 1-68 (664)
405 PRK09376 rho transcription ter 91.6 1.2 2.5E-05 45.3 9.4 19 52-70 168-186 (416)
406 COG3267 ExeA Type II secretory 91.6 1.6 3.5E-05 41.3 9.7 21 51-71 48-69 (269)
407 TIGR01242 26Sp45 26S proteasom 91.6 1.2 2.5E-05 45.4 9.8 21 54-74 157-177 (364)
408 cd01128 rho_factor Transcripti 91.6 1.5 3.2E-05 42.0 9.8 20 51-70 14-33 (249)
409 TIGR00678 holB DNA polymerase 91.6 2 4.3E-05 39.0 10.4 40 157-202 95-134 (188)
410 PF01443 Viral_helicase1: Vira 91.6 0.32 6.8E-06 45.9 5.3 37 56-93 1-37 (234)
411 COG2804 PulE Type II secretory 91.5 0.35 7.5E-06 50.2 5.7 31 39-69 242-274 (500)
412 PRK13876 conjugal transfer cou 91.5 0.18 3.9E-06 55.0 3.9 55 54-109 145-200 (663)
413 COG4185 Uncharacterized protei 91.5 0.71 1.5E-05 40.4 6.7 37 56-93 5-41 (187)
414 TIGR00767 rho transcription te 91.4 0.99 2.2E-05 46.0 8.8 21 52-72 167-187 (415)
415 PRK10689 transcription-repair 91.4 0.49 1.1E-05 55.1 7.5 75 257-331 648-727 (1147)
416 COG0593 DnaA ATPase involved i 91.4 2.5 5.4E-05 43.3 11.7 16 158-173 175-190 (408)
417 PRK00440 rfc replication facto 91.4 2.8 6E-05 41.5 12.2 17 55-71 40-56 (319)
418 PTZ00361 26 proteosome regulat 91.3 1.3 2.8E-05 46.1 9.8 22 53-74 217-238 (438)
419 PRK13894 conjugal transfer ATP 91.1 0.44 9.5E-06 47.4 6.0 52 39-90 133-190 (319)
420 PRK10865 protein disaggregatio 91.1 1.7 3.8E-05 49.3 11.4 29 43-71 183-217 (857)
421 TIGR02782 TrbB_P P-type conjug 91.1 0.71 1.5E-05 45.5 7.3 52 39-90 117-174 (299)
422 TIGR02237 recomb_radB DNA repa 91.0 1.3 2.8E-05 41.0 8.8 35 53-87 12-49 (209)
423 PRK11054 helD DNA helicase IV; 91.0 0.84 1.8E-05 50.3 8.5 62 37-100 195-263 (684)
424 KOG0742 AAA+-type ATPase [Post 91.0 0.63 1.4E-05 46.8 6.7 17 54-70 385-401 (630)
425 PRK06749 replicative DNA helic 90.9 2 4.4E-05 44.6 10.8 30 56-85 189-221 (428)
426 TIGR03345 VI_ClpV1 type VI sec 90.9 2.2 4.7E-05 48.5 11.8 29 42-70 570-613 (852)
427 TIGR00416 sms DNA repair prote 90.7 2.3 4.9E-05 44.6 11.1 58 45-103 81-146 (454)
428 PRK14701 reverse gyrase; Provi 90.7 1.4 3E-05 53.3 10.4 63 257-319 121-189 (1638)
429 PRK06305 DNA polymerase III su 90.6 2.4 5.2E-05 44.4 11.1 40 157-202 120-159 (451)
430 TIGR02640 gas_vesic_GvpN gas v 90.5 0.46 1E-05 45.9 5.4 40 45-84 13-52 (262)
431 cd01130 VirB11-like_ATPase Typ 90.5 0.6 1.3E-05 42.5 5.9 34 37-70 8-42 (186)
432 TIGR03499 FlhF flagellar biosy 90.5 1.5 3.1E-05 43.0 8.9 18 54-71 195-212 (282)
433 KOG0733 Nuclear AAA ATPase (VC 90.5 4.3 9.3E-05 43.2 12.4 58 12-70 505-562 (802)
434 TIGR03346 chaperone_ClpB ATP-d 90.4 2.2 4.7E-05 48.6 11.4 29 43-71 178-212 (852)
435 PRK09302 circadian clock prote 90.4 2.3 5E-05 45.4 11.1 108 47-172 262-377 (509)
436 PRK07773 replicative DNA helic 90.4 1.1 2.5E-05 51.0 9.2 154 45-202 205-376 (886)
437 COG0470 HolB ATPase involved i 90.3 2.4 5.3E-05 42.0 10.7 45 157-207 108-152 (325)
438 TIGR02238 recomb_DMC1 meiotic 90.3 1 2.3E-05 44.6 7.7 43 46-88 84-140 (313)
439 PRK14970 DNA polymerase III su 90.3 2.8 6.1E-05 42.6 11.2 16 55-70 41-56 (367)
440 PF01637 Arch_ATPase: Archaeal 90.1 2.7 5.8E-05 39.1 10.2 43 160-203 120-165 (234)
441 PHA00350 putative assembly pro 90.1 2.4 5.2E-05 43.3 10.2 24 56-79 4-31 (399)
442 COG1200 RecG RecG-like helicas 90.1 1.6 3.4E-05 47.0 9.2 75 257-331 310-389 (677)
443 KOG1513 Nuclear helicase MOP-3 90.0 0.48 1E-05 51.2 5.3 75 301-375 850-935 (1300)
444 PRK14971 DNA polymerase III su 90.0 1.9 4.1E-05 47.0 10.1 47 157-209 120-166 (614)
445 PRK13851 type IV secretion sys 89.9 0.49 1.1E-05 47.5 5.1 42 50-91 159-202 (344)
446 PRK14954 DNA polymerase III su 89.8 2.2 4.8E-05 46.4 10.3 41 157-203 126-166 (620)
447 PRK05986 cob(I)alamin adenolsy 89.8 1.8 3.8E-05 39.5 8.1 54 151-207 108-161 (191)
448 KOG0740 AAA+-type ATPase [Post 89.7 2.1 4.6E-05 43.8 9.5 34 54-87 187-220 (428)
449 TIGR00708 cobA cob(I)alamin ad 89.6 5.9 0.00013 35.5 11.2 52 152-206 91-142 (173)
450 PRK13900 type IV secretion sys 89.5 0.53 1.1E-05 47.1 5.0 40 51-90 158-199 (332)
451 PRK06647 DNA polymerase III su 89.5 1.9 4.2E-05 46.4 9.5 19 55-73 40-58 (563)
452 COG1435 Tdk Thymidine kinase [ 89.5 0.74 1.6E-05 41.8 5.3 34 56-89 7-43 (201)
453 COG0630 VirB11 Type IV secreto 89.4 2.4 5.3E-05 42.0 9.6 53 38-90 127-182 (312)
454 CHL00195 ycf46 Ycf46; Provisio 89.4 2.5 5.5E-05 44.6 10.1 18 54-71 260-277 (489)
455 cd00561 CobA_CobO_BtuR ATP:cor 89.4 1.9 4.1E-05 38.1 7.8 53 151-206 88-140 (159)
456 TIGR02785 addA_Gpos recombinat 89.3 0.78 1.7E-05 54.3 7.0 61 38-100 1-67 (1232)
457 KOG0729 26S proteasome regulat 89.2 4.5 9.7E-05 38.5 10.4 76 16-93 175-250 (435)
458 PRK08451 DNA polymerase III su 89.1 3.9 8.4E-05 43.6 11.3 42 157-204 116-157 (535)
459 TIGR03345 VI_ClpV1 type VI sec 89.0 3.1 6.8E-05 47.2 11.2 30 42-71 191-226 (852)
460 COG2909 MalT ATP-dependent tra 89.0 2.9 6.3E-05 46.1 10.3 41 159-204 130-171 (894)
461 PF05729 NACHT: NACHT domain 88.9 4.7 0.0001 35.1 10.4 43 160-202 83-129 (166)
462 cd01394 radB RadB. The archaea 88.9 1.9 4E-05 40.2 8.1 40 46-85 7-54 (218)
463 PLN03187 meiotic recombination 88.9 1.3 2.8E-05 44.4 7.3 41 47-87 115-169 (344)
464 PRK07471 DNA polymerase III su 88.8 5 0.00011 40.8 11.5 43 157-205 140-182 (365)
465 COG3973 Superfamily I DNA and 88.7 2.3 5E-05 45.0 9.0 85 23-108 191-290 (747)
466 COG0556 UvrB Helicase subunit 88.7 9.6 0.00021 40.0 13.2 122 77-212 445-566 (663)
467 PRK13880 conjugal transfer cou 88.6 0.31 6.7E-06 53.2 2.8 56 54-109 176-233 (636)
468 PLN00020 ribulose bisphosphate 88.4 0.75 1.6E-05 46.2 5.1 31 55-85 150-180 (413)
469 PRK09087 hypothetical protein; 88.3 2.2 4.9E-05 40.1 8.1 17 55-71 46-62 (226)
470 CHL00095 clpC Clp protease ATP 88.2 2.6 5.6E-05 47.8 9.9 19 54-72 201-219 (821)
471 COG2805 PilT Tfp pilus assembl 88.1 0.76 1.7E-05 44.5 4.7 14 56-69 128-141 (353)
472 PF10593 Z1: Z1 domain; Inter 88.1 2.2 4.8E-05 40.5 7.9 89 282-375 110-203 (239)
473 cd01129 PulE-GspE PulE/GspE Th 88.0 1.1 2.5E-05 43.2 6.1 32 39-70 64-97 (264)
474 PRK09361 radB DNA repair and r 88.0 3.8 8.1E-05 38.4 9.6 40 47-86 12-59 (225)
475 KOG0347 RNA helicase [RNA proc 87.9 1.3 2.8E-05 46.2 6.4 54 260-317 265-322 (731)
476 KOG0733 Nuclear AAA ATPase (VC 87.8 6.7 0.00015 41.8 11.6 53 159-213 283-347 (802)
477 PF13671 AAA_33: AAA domain; P 87.8 4.9 0.00011 34.3 9.5 16 56-71 2-17 (143)
478 PRK12608 transcription termina 87.7 2.2 4.8E-05 43.1 8.0 30 41-70 118-150 (380)
479 cd00268 DEADc DEAD-box helicas 87.5 3.2 7E-05 37.9 8.6 71 257-331 68-148 (203)
480 PRK10436 hypothetical protein; 87.4 1.1 2.4E-05 47.0 5.9 31 39-69 202-234 (462)
481 PF00437 T2SE: Type II/IV secr 87.3 0.62 1.3E-05 45.2 3.8 39 52-90 126-167 (270)
482 PRK09519 recA DNA recombinatio 87.3 3 6.4E-05 46.4 9.3 96 46-171 47-151 (790)
483 KOG0736 Peroxisome assembly fa 87.2 7.7 0.00017 42.5 11.9 57 11-70 665-722 (953)
484 CHL00095 clpC Clp protease ATP 87.2 1.4 3E-05 50.0 7.0 30 41-70 512-556 (821)
485 COG3598 RepA RecA-family ATPas 87.2 9 0.0002 37.7 11.3 145 40-203 75-242 (402)
486 TIGR00614 recQ_fam ATP-depende 87.1 1.7 3.7E-05 45.9 7.3 73 259-331 52-132 (470)
487 COG0542 clpA ATP-binding subun 87.1 1.5 3.2E-05 48.4 6.8 28 42-69 495-537 (786)
488 cd01125 repA Hexameric Replica 87.0 13 0.00028 35.2 12.7 30 56-85 4-48 (239)
489 PRK08058 DNA polymerase III su 87.0 2.9 6.3E-05 41.9 8.5 50 156-211 108-157 (329)
490 KOG0726 26S proteasome regulat 86.9 4.5 9.8E-05 39.1 9.0 17 54-70 220-236 (440)
491 TIGR01420 pilT_fam pilus retra 86.7 2.5 5.4E-05 42.6 7.9 18 53-70 122-139 (343)
492 COG3421 Uncharacterized protei 86.6 0.31 6.8E-06 51.1 1.3 46 306-351 328-383 (812)
493 COG1223 Predicted ATPase (AAA+ 86.5 6.4 0.00014 37.5 9.7 38 54-93 152-190 (368)
494 TIGR00602 rad24 checkpoint pro 86.5 3.8 8.2E-05 44.7 9.5 19 55-73 112-130 (637)
495 PF03969 AFG1_ATPase: AFG1-lik 86.5 12 0.00025 38.1 12.5 17 53-69 62-78 (362)
496 TIGR01054 rgy reverse gyrase. 86.4 1.4 3.1E-05 51.6 6.6 75 258-332 121-205 (1171)
497 PRK10733 hflB ATP-dependent me 86.1 8.5 0.00018 42.4 12.2 21 54-74 186-206 (644)
498 COG0378 HypB Ni2+-binding GTPa 86.0 13 0.00028 33.9 11.1 151 55-209 15-191 (202)
499 TIGR02688 conserved hypothetic 86.0 2 4.4E-05 44.0 6.7 48 24-71 173-227 (449)
500 TIGR02533 type_II_gspE general 86.0 1.3 2.7E-05 46.9 5.5 32 39-70 226-259 (486)
No 1
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.1e-91 Score=713.83 Aligned_cols=401 Identities=46% Similarity=0.813 Sum_probs=369.9
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCC
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi 103 (507)
+.+...|+++||+..||+.|.++|.++++|+|+++++|||+|||+|||+|++...|.||||+|+++||+||+++|+..|+
T Consensus 3 ~~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi 82 (590)
T COG0514 3 EEAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGI 82 (590)
T ss_pred hHHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCc
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHH
Q 010563 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (507)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (507)
.+..+++..+..++..+...+..+. ++++|.+||.+.++.|+..+. ...+.++|||||||+|+|||||||+|.+
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~--~klLyisPErl~~~~f~~~L~----~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQ--LKLLYISPERLMSPRFLELLK----RLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCc--eeEEEECchhhcChHHHHHHH----hCCCceEEechHHHHhhcCCccCHhHHH
Confidence 9999999999999999999998885 999999999999998888877 3459999999999999999999999999
Q ss_pred HHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEE
Q 010563 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263 (507)
Q Consensus 184 l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IV 263 (507)
|+.++..+|++|++++|||+++.+..||.+.|++..+.++..+++||||+|.+..+.....++..+.+ +.....+++||
T Consensus 157 lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GII 235 (590)
T COG0514 157 LGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGII 235 (590)
T ss_pred HHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999987643344443332 22556677999
Q ss_pred EeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHH
Q 010563 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (507)
Q Consensus 264 f~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~ 343 (507)
||.|++.++.+++.|.+.|+.+..|||||+.++|..++++|.+++++|+|||.|||||||+||||+||||++|.|+++|+
T Consensus 236 Yc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYy 315 (590)
T COG0514 236 YCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYY 315 (590)
T ss_pred EEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhccCCchHHHHHhhhCCC
Q 010563 344 QESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423 (507)
Q Consensus 344 Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~~~~~f~~~ 423 (507)
|++|||||||.++.|+++|++.|....++++....+ .++..+....++.+|..||++..|||..+++||||.
T Consensus 316 QE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~--------~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~yfge~ 387 (590)
T COG0514 316 QETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP--------DEEQKQIELAKLRQMIAYCETQTCRRLVLLKYFGED 387 (590)
T ss_pred HHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHhcccccchHHHHHHhcCcc
Confidence 999999999999999999999999999888876543 334456667889999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCChHH
Q 010563 424 IPVSLCKNSCDACKHPNL 441 (507)
Q Consensus 424 ~~~~~c~~~Cd~c~~~~~ 441 (507)
.+..|.. ||+|..+..
T Consensus 388 -~~~~c~~-c~~c~~~~~ 403 (590)
T COG0514 388 -EPEPCGN-CDNCLDTPK 403 (590)
T ss_pred -ccccccC-CCcccCcch
Confidence 6678995 999998654
No 2
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=7.6e-92 Score=670.16 Aligned_cols=428 Identities=39% Similarity=0.720 Sum_probs=390.7
Q ss_pred HHHHHHHHHHhcCCCCCc-HHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHH
Q 010563 23 KEALVKLLRWHFGHAQFR-DKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r-~~Q~~~i~~i~~g-~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
......+|+++||+++|. +.|+.|+..+..+ +||+|+||||+|||+|||||+|...+.+||++|+++|++||++.|..
T Consensus 4 Er~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~ 83 (641)
T KOG0352|consen 4 ERKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKR 83 (641)
T ss_pred HHHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHh
Confidence 356788999999999997 8999999999877 59999999999999999999999999999999999999999999999
Q ss_pred cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHH
Q 010563 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180 (507)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~ 180 (507)
+.+++..+++..+..++.++..++...++.++++|.|||..+|.+|...|..+.+...+.++|||||||+++|||||||+
T Consensus 84 LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 84 LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCe-EEeccCCCCceEEEEEeecchhhHHHHHHHHHHhc---
Q 010563 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--- 256 (507)
Q Consensus 181 ~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~-~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~--- 256 (507)
|.+|+.|+..++++|+++||||+++.+++||...|.+.+|+ ++..+..|.|++|.+..+....+-+..|.++-...
T Consensus 164 YL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~ 243 (641)
T KOG0352|consen 164 YLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGK 243 (641)
T ss_pred hhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999986 67788899999999999988888888888876431
Q ss_pred ----------CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCC
Q 010563 257 ----------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (507)
Q Consensus 257 ----------~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~ 326 (507)
..+++||||+|++.||+++-.|...|+++..||+||...+|.++++.|++|+++||+||..||||||+|+
T Consensus 244 ~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~ 323 (641)
T KOG0352|consen 244 HEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPD 323 (641)
T ss_pred hhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcc
Confidence 2368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHh
Q 010563 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYC 406 (507)
Q Consensus 327 v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (507)
||+||||++|+|+..|||++|||||||.++.|-+||+..|...++++++....+.. .....+...+..+..|.+|++||
T Consensus 324 VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklr-ek~~ke~~~k~~I~~F~k~~eFC 402 (641)
T KOG0352|consen 324 VRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLR-EKAKKEMQIKSIITGFAKMLEFC 402 (641)
T ss_pred eeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHH-HhcchhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999886544321 11122333456677899999999
Q ss_pred ccCCchHHHHHhhhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 010563 407 EGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELTSAV 453 (507)
Q Consensus 407 ~~~~Crr~~~~~~f~~~~~~~~c~~~Cd~c~~~~~~~~~~~~~~~~~ 453 (507)
|...|||+.|.+|||+..+ .|..+||+|+.|....+.++......
T Consensus 403 E~~~CRH~~ia~fFgD~~p--~ckg~cd~c~~p~k~~r~~e~f~~s~ 447 (641)
T KOG0352|consen 403 ESARCRHVSIASFFDDTEC--PCKTNCDYCRDPTKTIRNVEAFINSE 447 (641)
T ss_pred HHcccchHHHHHhcCCCCC--CCCCCccccCCHHHHHHHHHHHHHhh
Confidence 9999999999999999865 58889999998766555555544443
No 3
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.2e-83 Score=693.78 Aligned_cols=420 Identities=41% Similarity=0.729 Sum_probs=373.7
Q ss_pred CCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHH
Q 010563 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (507)
Q Consensus 19 ~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l 98 (507)
+++..+.+...++++||+..|||.|.++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++||+||+..+
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L 520 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNL 520 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHH
Confidence 58888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCC
Q 010563 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177 (507)
Q Consensus 99 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~f 177 (507)
...|+++..++++....+...+...+......++|+|+|||.+.... ++..+......+.+.+||||||||+++|||+|
T Consensus 521 ~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDF 600 (1195)
T PLN03137 521 LQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDF 600 (1195)
T ss_pred HhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccch
Confidence 99999999999999988888888777664446999999999988754 45555555556679999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhc-
Q 010563 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN- 256 (507)
Q Consensus 178 r~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~- 256 (507)
||+|..|..++..+|++|+++||||+++.+..++...|++.++.++..+++|||+.|.+..+. ......+..++...
T Consensus 601 RpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~--kk~le~L~~~I~~~~ 678 (1195)
T PLN03137 601 RPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLEDIDKFIKENH 678 (1195)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc--hhHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999988653 23345677777643
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p 336 (507)
.+.++||||+|++.|+.+++.|.+.|+.+..|||+|++++|..++++|.+|+++|||||++||||||+|+|++||||++|
T Consensus 679 ~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlP 758 (1195)
T PLN03137 679 FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 758 (1195)
T ss_pred cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCC------ccchhhhhhHHHHHHHHHHHHHhccC-
Q 010563 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ------SFSTRERSSKKSISDFSQMVDYCEGS- 409 (507)
Q Consensus 337 ~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~- 409 (507)
+|++.|+||+|||||+|.+|.|++||+..|...++.++......... ...+.....+...+.|.+|+.||++.
T Consensus 759 kSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~ 838 (1195)
T PLN03137 759 KSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEV 838 (1195)
T ss_pred CCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChH
Confidence 99999999999999999999999999999999999998754322110 00111223345678899999999996
Q ss_pred CchHHHHHhhhCCCCCCCCCCCCCCCCCChH
Q 010563 410 GCRRKKILESFGEQIPVSLCKNSCDACKHPN 440 (507)
Q Consensus 410 ~Crr~~~~~~f~~~~~~~~c~~~Cd~c~~~~ 440 (507)
.|||+.+|.||||.++...|+..||+|..+.
T Consensus 839 ~CRR~~lL~yFGE~~~~~~C~~~CDnC~~~~ 869 (1195)
T PLN03137 839 DCRRFLQLVHFGEKFDSTNCKKTCDNCSSSK 869 (1195)
T ss_pred hhHHHHHHHHcccccCccCCCCCCCCCCCCC
Confidence 8999999999999976667998899998754
No 4
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4e-83 Score=690.87 Aligned_cols=424 Identities=49% Similarity=0.831 Sum_probs=384.9
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCC
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi 103 (507)
++....++.+||+..|||.|.+||.+++.|+|++|.||||+|||+|||+|++..++.+|||+|+++||+||+..|...+|
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I 329 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGI 329 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCc
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHH
Q 010563 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (507)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~ 182 (507)
++.++++.++..++..+++.+..+.+.++++|+|||.+...+ +...+..+...+.+.++|||||||+++|||||||+|.
T Consensus 330 ~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk 409 (941)
T KOG0351|consen 330 PACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYK 409 (941)
T ss_pred ceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHH
Confidence 999999999999999999999999889999999999887765 4456677777788999999999999999999999999
Q ss_pred HHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEE
Q 010563 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262 (507)
Q Consensus 183 ~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~I 262 (507)
.|+.++..+|.+|+|+||||+++.++.|+...|++.++.++..+++|+|++|+|..+......+..+...-..++..++|
T Consensus 410 ~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~I 489 (941)
T KOG0351|consen 410 RLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGI 489 (941)
T ss_pred HHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999998875444444444444557788999
Q ss_pred EEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHH
Q 010563 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAF 342 (507)
Q Consensus 263 Vf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y 342 (507)
|||.++++|+.++..|+..|+.+..||+||++++|..++++|..++++|+|||.|||||||+||||+||||++|+|++.|
T Consensus 490 IYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~Y 569 (941)
T KOG0351|consen 490 IYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGY 569 (941)
T ss_pred EEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhH-HHHHHHHHHHHHhcc-CCchHHHHHhhh
Q 010563 343 YQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK-KSISDFSQMVDYCEG-SGCRRKKILESF 420 (507)
Q Consensus 343 ~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~Crr~~~~~~f 420 (507)
||++|||||||.++.|++||+..|...++.++..... ... ..+ .....+.+|+.||++ +.|||+.++.||
T Consensus 570 YQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~-~~~-------~~~~~~~~~l~~~~~yCen~t~crr~~~l~~f 641 (941)
T KOG0351|consen 570 YQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNR-LSG-------VKKFTRLLELVQVVTYCENETDCRRKQILEYF 641 (941)
T ss_pred HHhccccCcCCCcceeEEecchhHHHHHHHHHHcccc-ccc-------hhhccchhhHHHHHHhhcCccchhHHHHHHhc
Confidence 9999999999999999999999999999999987611 111 112 356788999999995 699999999999
Q ss_pred CCCCCCCCCC--CCCCCCCChHHHHHHHHHHHHHHhh
Q 010563 421 GEQIPVSLCK--NSCDACKHPNLLAKYLGELTSAVLQ 455 (507)
Q Consensus 421 ~~~~~~~~c~--~~Cd~c~~~~~~~~~~~~~~~~~~~ 455 (507)
||.++...|. +.||+|.....+...+.++......
T Consensus 642 ge~f~~~~c~~~k~cd~C~~~~dv~~~~~d~~~~~~~ 678 (941)
T KOG0351|consen 642 GEEFDSKHCKKHKTCDNCRESLDVAYELRDVTLTALD 678 (941)
T ss_pred ccccchhhccCCchHHHhhcccccchHHHHHHHHHHH
Confidence 9999888999 7999999876555555555554433
No 5
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1e-80 Score=586.09 Aligned_cols=407 Identities=41% Similarity=0.760 Sum_probs=380.9
Q ss_pred CCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHH
Q 010563 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97 (507)
Q Consensus 18 ~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~ 97 (507)
+.+|.+.+..+.|++.|....|||.|.++|.+.+.|+|+++++|||+|||+||++|+|...|.+|||+|+++||+||..+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~ 153 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQ 153 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHH
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccC-hhhHHHHHhhhccCCccEEEEeccccccccCCC
Q 010563 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (507)
Q Consensus 98 l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~ 176 (507)
|+.+||.+..++...+..+...+...+.......+++|+|||.++. ..|++.|.+....+.+.+|.|||+||.++||||
T Consensus 154 lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghd 233 (695)
T KOG0353|consen 154 LKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHD 233 (695)
T ss_pred HHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcc
Confidence 9999999999999999999888888888888889999999998875 568999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecch-hhHHHHHHHHHHh
Q 010563 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL-DDAYADLCSVLKA 255 (507)
Q Consensus 177 fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~-~~~~~~l~~~l~~ 255 (507)
|||+|..|+-+.++|++.|++++|||++..+..|....|++.....++.+|+|||++|.|+.++.. ++..+++..+++.
T Consensus 234 fr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~ 313 (695)
T KOG0353|consen 234 FRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKG 313 (695)
T ss_pred cCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999988754 4556777777754
Q ss_pred -cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeC
Q 010563 256 -NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (507)
Q Consensus 256 -~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (507)
..+..+||||-+++.|+.++..|+..|+.+..||+.|.+.+|.-+.+.|..|+++|+|||.+||||||+|+||+|||.+
T Consensus 314 ~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 314 DFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred ccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecc
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHH-------------------------------------------HhcccCCCCCCceEEEEeccchHHHHH
Q 010563 335 IPKSMEAFYQ-------------------------------------------ESGRAGRDQLPSKSLLYYGMDDRRRME 371 (507)
Q Consensus 335 ~p~s~~~y~Q-------------------------------------------~~GRagR~g~~~~~i~~~~~~d~~~~~ 371 (507)
+|+|++.||| +.||||||+.++.|++||...|..++.
T Consensus 394 l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~s 473 (695)
T KOG0353|consen 394 LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKIS 473 (695)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHH
Confidence 9999999999 999999999999999999999998887
Q ss_pred HHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhcc-CCchHHHHHhhhCCCCCCCCCCCCCCCCCCh
Q 010563 372 FILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDACKHP 439 (507)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Crr~~~~~~f~~~~~~~~c~~~Cd~c~~~ 439 (507)
.++... ...++.|..|+.||.. +.|||..+.+||+|.+.++.|+++||+|...
T Consensus 474 smv~~e---------------~~g~q~ly~mv~y~~d~s~crrv~laehfde~w~~~~c~k~cd~c~~~ 527 (695)
T KOG0353|consen 474 SMVQME---------------NTGIQKLYEMVRYAADISKCRRVKLAEHFDEAWEPEACNKMCDNCCKD 527 (695)
T ss_pred HHHHHH---------------hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHHHHHHHhhhhccC
Confidence 776532 2355788999999987 5899999999999999999999999999763
No 6
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.4e-75 Score=627.34 Aligned_cols=403 Identities=42% Similarity=0.737 Sum_probs=361.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHH
Q 010563 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (507)
Q Consensus 19 ~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l 98 (507)
.++..+.....|++.|||++|||+|.++|+++++|+|++++||||+|||+||++|++...+.+|||+|+++|+.||++.+
T Consensus 6 ~~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 6 VLNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred cCCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHH
Confidence 35566677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCH
Q 010563 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (507)
Q Consensus 99 ~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (507)
+.+|+.+..+++.........+...+..+. ++++|+|||.+.+..+...+.. ..+++|||||||++++||++||
T Consensus 86 ~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~--~~il~~tPe~l~~~~~~~~l~~----~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 86 LANGVAAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERLMMDNFLEHLAH----WNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHhCCC--CcEEEEChHHhcChHHHHHHhh----CCCCEEEEeCccccccccCccc
Confidence 999999999999988887777777766654 8999999999988776655442 3589999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCC
Q 010563 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (507)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~ 258 (507)
|.|..|..++..+|+.|++++|||+++.+..++...+++.+|.++..+++++|+.|.+.... .....+..++....+
T Consensus 160 ~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~ 236 (607)
T PRK11057 160 PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF---KPLDQLMRYVQEQRG 236 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc---chHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998876543 345667777777777
Q ss_pred ccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCC
Q 010563 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKS 338 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s 338 (507)
.++||||+|+++|+.+++.|++.|+.+..|||+|++++|..+++.|.+|+++|||||++++||||+|+|++||||++|.|
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s 316 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRN 316 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhccCCchHHHHHh
Q 010563 339 MEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILE 418 (507)
Q Consensus 339 ~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~~~~ 418 (507)
+++|+||+|||||+|.+|.|++||++.|...++.++...... .........+..|..||++..|||+.+++
T Consensus 317 ~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~Crr~~~l~ 387 (607)
T PRK11057 317 IESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAG---------QQQDIERHKLNAMGAFAEAQTCRRLVLLN 387 (607)
T ss_pred HHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcH---------HHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 999999999999999999999999999999988887643211 11223345788999999999999999999
Q ss_pred hhCCCCCCCCCCCCCCCCCChHH
Q 010563 419 SFGEQIPVSLCKNSCDACKHPNL 441 (507)
Q Consensus 419 ~f~~~~~~~~c~~~Cd~c~~~~~ 441 (507)
||||... ..|+ .||+|..+..
T Consensus 388 yf~e~~~-~~c~-~cd~c~~~~~ 408 (607)
T PRK11057 388 YFGEGRQ-EPCG-NCDICLDPPK 408 (607)
T ss_pred HhCCCCC-CCCC-CCCCCCCccc
Confidence 9999864 3577 8999998653
No 7
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.2e-75 Score=609.28 Aligned_cols=394 Identities=46% Similarity=0.820 Sum_probs=349.7
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEe
Q 010563 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (507)
Q Consensus 29 ~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~ 108 (507)
.|++.|||++|||+|.++|+++++|+|++++||||+|||+||++|++...+.+|||+|+++|+.||++.++.+|+++..+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 010563 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l 187 (507)
++.....+...+...+..+ .++++|+|||.+.+.. +...+. ....+++|||||||++++||++||+.|..+..+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~--~~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDG--KIKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred eCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 9998888777777777555 4899999999988765 444442 456699999999999999999999999999999
Q ss_pred HHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHH-hcCCccEEEEec
Q 010563 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYCL 266 (507)
Q Consensus 188 ~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~-~~~~~~~IVf~~ 266 (507)
+..+|++|++++|||+++.+..++...+++.++.++..+++++|+.|.+..... +.+..+..++. ...+.++||||+
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~--~~~~~l~~~l~~~~~~~~~IIF~~ 234 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTP--KILEDLLRFIRKEFKGKSGIIYCP 234 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCc--cHHHHHHHHHHHhcCCCceEEEEC
Confidence 999999999999999999999999999999999999999999999998876642 45666777776 445567799999
Q ss_pred cchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHh
Q 010563 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (507)
Q Consensus 267 s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~ 346 (507)
|++.++.+++.|++.|+.+..|||+|++++|..+++.|.+|+++|||||++++||||+|+|++|||+++|.|++.|+||+
T Consensus 235 s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~ 314 (470)
T TIGR00614 235 SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQES 314 (470)
T ss_pred cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhccCCchHHHHHhhhCCCCC-
Q 010563 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIP- 425 (507)
Q Consensus 347 GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~~~~~f~~~~~- 425 (507)
|||||+|.+|.|++||++.|...++.++....... ........+..|..|++...|||+.+++|||+...
T Consensus 315 GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~crr~~l~~~f~~~~~~ 385 (470)
T TIGR00614 315 GRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQ---------QRTYKLKLYEMMEYCLNSSTCRRLILLSHFGEKQLN 385 (470)
T ss_pred cCcCCCCCCceEEEEechhHHHHHHHHHhcCCchh---------HHHHHHHHHHHHHHHhccccCHHHHHHHHcCCcccc
Confidence 99999999999999999999999999887543211 11223345677888888899999999999999532
Q ss_pred ----CCCCCCCCCCCCC
Q 010563 426 ----VSLCKNSCDACKH 438 (507)
Q Consensus 426 ----~~~c~~~Cd~c~~ 438 (507)
...|..+||+|..
T Consensus 386 ~~~~~~~~~~~C~~C~~ 402 (470)
T TIGR00614 386 KSFGIMGTEKCCDNCCK 402 (470)
T ss_pred cccccccCCCCCCCCCC
Confidence 2346667888864
No 8
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.5e-75 Score=627.11 Aligned_cols=395 Identities=42% Similarity=0.742 Sum_probs=358.3
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCceE
Q 010563 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (507)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~ 106 (507)
...|++.|||++|||+|.++|+++++|+|++++||||+|||+||++|++...+.++||+|+++||.||++.|+.+|+++.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 010563 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (507)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (507)
.+++.....+...+...+..+. ++++|+|||.+.++.+...+. ...+++||||||||+++||++|||.|..+..
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~--~~il~~tpe~l~~~~~~~~l~----~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGE--LKLLYVAPERLEQDYFLNMLQ----RIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCC--CCEEEEChhHhcChHHHHHHh----cCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 9999999888888877777664 899999999998876655443 3469999999999999999999999999999
Q ss_pred HHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEec
Q 010563 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266 (507)
Q Consensus 187 l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~ 266 (507)
++..+|+.|++++|||+++.+..++...+++.++.++..+++++|+.|.+.... .+...+.+++....+.++||||+
T Consensus 156 l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~~~IIf~~ 232 (591)
T TIGR01389 156 LAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN---NKQKFLLDYLKKHRGQSGIIYAS 232 (591)
T ss_pred HHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCC---CHHHHHHHHHHhcCCCCEEEEEC
Confidence 999999999999999999999999999999999999999999999999887653 45667777887776788999999
Q ss_pred cchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHh
Q 010563 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (507)
Q Consensus 267 s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~ 346 (507)
|++.++.+++.|...|+++..|||+|+.++|..+++.|.+|+++|||||++++||||+|+|++|||+++|.|+++|+|++
T Consensus 233 sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~ 312 (591)
T TIGR01389 233 SRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEA 312 (591)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhccCCchHHHHHhhhCCCCCC
Q 010563 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPV 426 (507)
Q Consensus 347 GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~~~~~~f~~~~~~ 426 (507)
|||||+|.++.|+++|++.|...++.++..... .+.........+.+|..||++..|||+.+++|||+.. +
T Consensus 313 GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~c~r~~~~~~f~~~~-~ 383 (591)
T TIGR01389 313 GRAGRDGLPAEAILLYSPADIALLKRRIEQSEA--------DDDYKQIEREKLRAMIAYCETQTCRRAYILRYFGENE-V 383 (591)
T ss_pred ccccCCCCCceEEEecCHHHHHHHHHHHhccCC--------cHHHHHHHHHHHHHHHHHHcccccHhHHHHHhcCCCC-C
Confidence 999999999999999999999999888865322 1122233456789999999999999999999999874 3
Q ss_pred CCCCCCCCCCCChH
Q 010563 427 SLCKNSCDACKHPN 440 (507)
Q Consensus 427 ~~c~~~Cd~c~~~~ 440 (507)
..|+ .||+|..+.
T Consensus 384 ~~c~-~cd~c~~~~ 396 (591)
T TIGR01389 384 EPCG-NCDNCLDPP 396 (591)
T ss_pred CCCC-CCCCCCCCC
Confidence 4687 799998754
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.5e-53 Score=439.90 Aligned_cols=341 Identities=20% Similarity=0.254 Sum_probs=274.9
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-------------CCCeE
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KPGIV 81 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~-------------~~~~~ 81 (507)
..|+.+++++.+.+.|.. +||..|+|+|.++|+.+++|+|++++||||+|||++|++|++. ....+
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 8 QKFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 458889999999999998 7999999999999999999999999999999999999999873 13579
Q ss_pred EEecChHHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH-Hhhhcc
Q 010563 82 LVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSR 156 (507)
Q Consensus 82 lvi~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~~~~~~ 156 (507)
|||+||++|+.|+.+.+.. .|+.+..+.++........ .+.. ..+|+++||+.+.. .+ ......
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~~---~~~IlV~TP~~l~~-----~l~~~~~~l 155 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VLES---GVDILIGTTGRLID-----YAKQNHINL 155 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhcC---CCCEEEECHHHHHH-----HHHcCCccc
Confidence 9999999999999887765 3677777776655443322 2222 36788888876532 11 223445
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccC---CCC
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRP 230 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~ 230 (507)
..+++|||||||++.+|| |..+... +....| ..+.+++|||++..+.......+ .+|..+.... ...
T Consensus 156 ~~v~~lViDEad~l~~~~--f~~~i~~---i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~--~~p~~i~v~~~~~~~~ 228 (423)
T PRK04837 156 GAIQVVVLDEADRMFDLG--FIKDIRW---LFRRMPPANQRLNMLFSATLSYRVRELAFEHM--NNPEYVEVEPEQKTGH 228 (423)
T ss_pred ccccEEEEecHHHHhhcc--cHHHHHH---HHHhCCCccceeEEEEeccCCHHHHHHHHHHC--CCCEEEEEcCCCcCCC
Confidence 679999999999999998 6655444 444454 34578999999988877555544 4554443221 122
Q ss_pred ceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCce
Q 010563 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (507)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (507)
++...... ....++...|..++......++||||++++.|+.+++.|...|+.+..+||+|++++|..+++.|++|+++
T Consensus 229 ~i~~~~~~-~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~ 307 (423)
T PRK04837 229 RIKEELFY-PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD 307 (423)
T ss_pred ceeEEEEe-CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc
Confidence 33332222 23356777888888877778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
|||||+++++|||+|+|++|||||+|.++++|+||+||+||+|+.|.+++|+.+.|...+..+.+
T Consensus 308 vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~ 372 (423)
T PRK04837 308 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIET 372 (423)
T ss_pred EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877776654
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.9e-52 Score=441.37 Aligned_cols=345 Identities=23% Similarity=0.325 Sum_probs=272.0
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEE
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVL 82 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~-----------~~~~l 82 (507)
...|+.+.+++.+.+.|++ +||..|+|+|.++|+.+++|+|++++||||+|||++|++|++.. ...+|
T Consensus 129 ~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~L 207 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVL 207 (545)
T ss_pred cCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 3457778889999999998 69999999999999999999999999999999999999998742 45799
Q ss_pred EecChHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccC
Q 010563 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRG 157 (507)
Q Consensus 83 vi~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~ 157 (507)
||+||++|+.|+.+.++.++ +....+.++....... ..+.. ..+|+++||+.+.. .+. ......
T Consensus 208 IL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~---~~l~~---~~~IlVaTPgrL~d-----~l~~~~~~l~ 276 (545)
T PTZ00110 208 VLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI---YALRR---GVEILIACPGRLID-----FLESNVTNLR 276 (545)
T ss_pred EECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHH---HHHHc---CCCEEEECHHHHHH-----HHHcCCCChh
Confidence 99999999999999988864 5556666655543322 22333 26788888876532 221 223345
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec-cCC---CCceE
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFN---RPNLF 233 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~---~~ni~ 233 (507)
.+++|||||||++.+|| |++.+..+.. ...++.+++++|||++..+.... ..+....+..+.. ... ..++.
T Consensus 277 ~v~~lViDEAd~mld~g--f~~~i~~il~--~~~~~~q~l~~SAT~p~~v~~l~-~~l~~~~~v~i~vg~~~l~~~~~i~ 351 (545)
T PTZ00110 277 RVTYLVLDEADRMLDMG--FEPQIRKIVS--QIRPDRQTLMWSATWPKEVQSLA-RDLCKEEPVHVNVGSLDLTACHNIK 351 (545)
T ss_pred hCcEEEeehHHhhhhcc--hHHHHHHHHH--hCCCCCeEEEEEeCCCHHHHHHH-HHHhccCCEEEEECCCccccCCCee
Confidence 68999999999999998 8877666532 23368899999999988775533 3333333443322 211 23443
Q ss_pred EEEEeecchhhHHHHHHHHHHhc--CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceE
Q 010563 234 YEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (507)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~--~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (507)
..+.... ..++...|..++... ...++||||++++.|+.++..|+..|+.+..+||++++++|..++++|++|+.+|
T Consensus 352 q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~I 430 (545)
T PTZ00110 352 QEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPI 430 (545)
T ss_pred EEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcE
Confidence 3333222 234566666666553 4568999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
||||+++++|||+|+|++|||||+|.++++|+||+||+||+|..|.|++|++++|...++.+++.
T Consensus 431 LVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 431 MIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred EEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998777666553
No 11
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-53 Score=427.42 Aligned_cols=341 Identities=26% Similarity=0.390 Sum_probs=277.6
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeEEE
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------------~~~~lv 83 (507)
.|..+++++++...|+. -||+.|+|+|.+.|+.++.|+|++..|.|||||||+|++|++.+ .+.+||
T Consensus 92 ~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 67788999999999998 59999999999999999999999999999999999999999742 467999
Q ss_pred ecChHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhccC
Q 010563 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRG 157 (507)
Q Consensus 84 i~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~ 157 (507)
++|||+|+.|..+.+.+++ ++..++.++.+..... .++..+ +++++ +||+++..+.+ ..++.
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~---~~l~~g---vdivi------aTPGRl~d~le~g~~~l~ 238 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQL---RDLERG---VDVVI------ATPGRLIDLLEEGSLNLS 238 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHH---HHHhcC---CcEEE------eCChHHHHHHHcCCcccc
Confidence 9999999999999888853 5577777777665543 233333 56654 45555555543 33455
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc-CC----CCc
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FN----RPN 231 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~----~~n 231 (507)
++.++|+||||+|+++| |++..++| +... -|..+.+++|||++..+.......+. ++..+... .+ ..+
T Consensus 239 ~v~ylVLDEADrMldmG--Fe~qI~~I--l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~~~~a~~~ 312 (519)
T KOG0331|consen 239 RVTYLVLDEADRMLDMG--FEPQIRKI--LSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKKELKANHN 312 (519)
T ss_pred ceeEEEeccHHhhhccc--cHHHHHHH--HHhcCCCcccEEEEeeeccHHHHHHHHHHhc--CceEEEecchhhhhhhcc
Confidence 79999999999999999 89877666 3333 23557999999999999887777776 55544333 21 233
Q ss_pred eEEEEEeecchhhHHHHHHHHHHhc---CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCC
Q 010563 232 LFYEVRYKDLLDDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (507)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~---~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (507)
+...+...+ ...+...|..+|... ..+++||||+|++.|++|+..|+..++++..+||+.++.+|+.+++.|++|+
T Consensus 313 i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~ 391 (519)
T KOG0331|consen 313 IRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGK 391 (519)
T ss_pred hhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCC
Confidence 333333333 345556666666543 5678999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
..|||||+++++|+|+|+|++||+||+|.++++|+||+||+||.|+.|.+++||+..+......+.+.
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~ 459 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKV 459 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877766554
No 12
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.5e-52 Score=433.36 Aligned_cols=343 Identities=22% Similarity=0.296 Sum_probs=277.4
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEecCh
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P~ 87 (507)
...|+.+++++.+.+.|.+ +||..|+|+|.+||+.+++|+|++++||||+|||++|.+|++.. ...+||++||
T Consensus 3 ~~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Pt 81 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPT 81 (460)
T ss_pred CCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCC
Confidence 3468889999999999998 79999999999999999999999999999999999999999853 3379999999
Q ss_pred HHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccE
Q 010563 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNL 161 (507)
Q Consensus 88 ~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~ 161 (507)
++|+.|+.+.++.+ ++.+..+.++.+...... .+. ...+|+++||+.+.. .+. .......+++
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~---~l~---~~~~IvV~Tp~rl~~-----~l~~~~~~l~~l~~ 150 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQID---SLE---HGAHIIVGTPGRILD-----HLRKGTLDLDALNT 150 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHH---Hhc---CCCCEEEEChHHHHH-----HHHcCCccHHHCCE
Confidence 99999999888864 466777777766544322 222 247788888876532 111 1223455899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc--CCCCceEEEEEe
Q 010563 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--FNRPNLFYEVRY 238 (507)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~~~ni~~~v~~ 238 (507)
||+||||++.++| |...+. .+....| ..+++++|||+++......... +.+|..+... ...+++...+..
T Consensus 151 lViDEad~~l~~g--~~~~l~---~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~--~~~~~~i~~~~~~~~~~i~~~~~~ 223 (460)
T PRK11776 151 LVLDEADRMLDMG--FQDAID---AIIRQAPARRQTLLFSATYPEGIAAISQRF--QRDPVEVKVESTHDLPAIEQRFYE 223 (460)
T ss_pred EEEECHHHHhCcC--cHHHHH---HHHHhCCcccEEEEEEecCcHHHHHHHHHh--cCCCEEEEECcCCCCCCeeEEEEE
Confidence 9999999999988 665554 4445555 6789999999998876543333 3455444332 223334333332
Q ss_pred ecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc
Q 010563 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (507)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (507)
.. ..++...+..++......++||||+|++.++.+++.|.+.|+.+..+||+|++.+|+.+++.|++|+++|||||+++
T Consensus 224 ~~-~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~ 302 (460)
T PRK11776 224 VS-PDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVA 302 (460)
T ss_pred eC-cHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccc
Confidence 22 24578888888887777889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
++|||+|++++||+|++|.+++.|+||+||+||.|..|.+++|+.+.|...++.+.+.
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~ 360 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDY 360 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887777554
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.2e-51 Score=430.34 Aligned_cols=342 Identities=21% Similarity=0.282 Sum_probs=271.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeEEE
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------------~~~~lv 83 (507)
.|+.+++++.+.+.|.+ +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. ..++||
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 46778899999999998 79999999999999999999999999999999999999998742 136999
Q ss_pred ecChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCc
Q 010563 84 VSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLL 159 (507)
Q Consensus 84 i~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l 159 (507)
|+||++|+.|+.+.++.+ ++....+.++........ .+. ...+|+++||+.+.... .........+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~---~~~~IiV~TP~rL~~~~----~~~~~~l~~v 150 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLR---GGVDVLVATPGRLLDLE----HQNAVKLDQV 150 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHc---CCCcEEEEChHHHHHHH----HcCCcccccc
Confidence 999999999999998874 566666666655443221 122 23789999988763311 1222345669
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEec---cCCCCceEEE
Q 010563 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYE 235 (507)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~ni~~~ 235 (507)
++|||||||++++|| |...+ ..+...+| ..+++++|||+++.+.......+ .++..+.. ....+++...
T Consensus 151 ~~lViDEah~ll~~~--~~~~i---~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 151 EILVLDEADRMLDMG--FIHDI---RRVLAKLPAKRQNLLFSATFSDDIKALAEKLL--HNPLEIEVARRNTASEQVTQH 223 (456)
T ss_pred eEEEeecHHHHhccc--cHHHH---HHHHHhCCccCeEEEEeCCCcHHHHHHHHHHc--CCCeEEEEecccccccceeEE
Confidence 999999999999998 54443 34445555 56899999999987765443333 34433322 2223344433
Q ss_pred EEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 010563 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (507)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (507)
+...+ ...+...+..++......++||||++++.++.+++.|.+.|+.+..|||+|++++|..+++.|++|+++|||||
T Consensus 224 ~~~~~-~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 302 (456)
T PRK10590 224 VHFVD-KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 302 (456)
T ss_pred EEEcC-HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 33322 23455666667776666789999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
+++++|||+|+|++||||++|.++++|+||+||+||+|..|.+++|+...|...++.+.+.
T Consensus 303 dv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 303 DIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred cHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877776553
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-51 Score=438.51 Aligned_cols=341 Identities=16% Similarity=0.226 Sum_probs=276.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------------CCeEE
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIVL 82 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~-------------~~~~l 82 (507)
.|+.+++++.+.+.|.+ +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. ..++|
T Consensus 10 ~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 58888999999999998 79999999999999999999999999999999999999998742 25899
Q ss_pred EecChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhcc
Q 010563 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (507)
Q Consensus 83 vi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~ 156 (507)
||+||++|+.|+.+.++.+ ++.+..+.++........... . ..+|+++||+.+.. .+.. ....
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~---~---~~dIiV~TP~rL~~-----~l~~~~~~~l 157 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ---Q---GVDVIIATPGRLID-----YVKQHKVVSL 157 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh---C---CCCEEEECHHHHHH-----HHHhccccch
Confidence 9999999999999988875 566777777766554433221 1 36788888886532 1211 2334
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhhHHHHHHHhCCCCCeEEec---cCCCC
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRP 230 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~ 230 (507)
..+++|||||||++.+|| |...+. .+...+| +.+++++|||++..+.......+ ..+..+.. .....
T Consensus 158 ~~v~~lViDEAh~lld~g--f~~~i~---~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l--~~p~~i~v~~~~~~~~ 230 (572)
T PRK04537 158 HACEICVLDEADRMFDLG--FIKDIR---FLLRRMPERGTRQTLLFSATLSHRVLELAYEHM--NEPEKLVVETETITAA 230 (572)
T ss_pred hheeeeEecCHHHHhhcc--hHHHHH---HHHHhcccccCceEEEEeCCccHHHHHHHHHHh--cCCcEEEecccccccc
Confidence 568899999999999988 655444 4444455 57899999999998877655544 33432221 11223
Q ss_pred ceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCce
Q 010563 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (507)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (507)
++...+.. .....+...+..++......++||||+|++.++.+++.|.+.|+.+..|||+|++.+|..+++.|++|+++
T Consensus 231 ~i~q~~~~-~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~ 309 (572)
T PRK04537 231 RVRQRIYF-PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309 (572)
T ss_pred ceeEEEEe-cCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 33333322 23356777788888877778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
|||||+++++|||+|+|++||||++|.++++|+||+||+||.|..|.|++|+...|...+..+.+.
T Consensus 310 VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~ 375 (572)
T PRK04537 310 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375 (572)
T ss_pred EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888777766553
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.7e-51 Score=426.49 Aligned_cols=342 Identities=23% Similarity=0.325 Sum_probs=279.1
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEEEec
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVS 85 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~----------~~~~lvi~ 85 (507)
.|+.+.+.+.+.+.|++ +||..|+++|.++|+++++|+|++++||||+|||++|++|++.. ..++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 47888999999999999 69999999999999999999999999999999999999999742 35899999
Q ss_pred ChHHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH-HhhhccCCcc
Q 010563 86 PLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLN 160 (507)
Q Consensus 86 P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~~~~~~~~l~ 160 (507)
||++|+.|+.+.+.. .++++..+.++.......... .+ ..+|+++||+.+.. .+ ........++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~--~~~IlV~Tp~rl~~-----~~~~~~~~~~~v~ 149 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SE--NQDIVVATPGRLLQ-----YIKEENFDCRAVE 149 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cC--CCCEEEEChHHHHH-----HHHcCCcCcccCC
Confidence 999999998887766 367788888777665543322 12 36788888876532 11 1223355689
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc---CCCCceEEEEE
Q 010563 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVR 237 (507)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~ni~~~v~ 237 (507)
+|||||||++.+|| |...+..+... .....++++||||++.....++...+. .++..+... ..+.++...+.
T Consensus 150 ~lViDEah~~l~~~--~~~~~~~i~~~--~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~~~~~ 224 (434)
T PRK11192 150 TLILDEADRMLDMG--FAQDIETIAAE--TRWRKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPSRRERKKIHQWYY 224 (434)
T ss_pred EEEEECHHHHhCCC--cHHHHHHHHHh--CccccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCCcccccCceEEEE
Confidence 99999999999998 77666655322 223578999999998776666666653 445444332 23344554444
Q ss_pred eecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc
Q 010563 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (507)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (507)
..+....+...|..+++.....++||||++++.++.+++.|++.|+.+..+||+|++.+|..+++.|++|+++|||||++
T Consensus 225 ~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~ 304 (434)
T PRK11192 225 RADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDV 304 (434)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccc
Confidence 44445677888888888767788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHH
Q 010563 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (507)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~ 374 (507)
+++|||+|+|++||||++|.|.+.|+||+||+||+|..|.+++++...|...+..+.
T Consensus 305 ~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 305 AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988877766554
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-51 Score=429.73 Aligned_cols=346 Identities=18% Similarity=0.243 Sum_probs=275.2
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------------CCe
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGI 80 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~-------------~~~ 80 (507)
...|.++.+++.+.+.|.+ +||..|+++|.++|+.+++|+|+++.+|||+|||++|++|++.. ..+
T Consensus 86 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 4567888999999999998 79999999999999999999999999999999999999998742 358
Q ss_pred EEEecChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhc
Q 010563 81 VLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHS 155 (507)
Q Consensus 81 ~lvi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~ 155 (507)
+|||+||++|+.|+.+.++.+ ++.+..+.++....... ..+... ..+|+++||+++.. .+. ....
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~--~~~Iiv~TP~~Ll~-----~~~~~~~~ 234 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR--FCDILVATPGRLLD-----FNQRGEVH 234 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC--CCCEEEECHHHHHH-----HHHcCCcc
Confidence 999999999999999988874 56776676665443322 222222 36899999987632 111 1233
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc---CCCCce
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNL 232 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~ni 232 (507)
...+++|||||||++.+++ |.+.+..+.......++.+++++|||.+..+......++ .++..+... ...+++
T Consensus 235 l~~l~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~ 310 (475)
T PRK01297 235 LDMVEVMVLDEADRMLDMG--FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT--TDPAIVEIEPENVASDTV 310 (475)
T ss_pred cccCceEEechHHHHHhcc--cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc--cCCEEEEeccCcCCCCcc
Confidence 4568999999999999987 766665554333222356899999999887766444433 344443221 112233
Q ss_pred EEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEE
Q 010563 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (507)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VL 312 (507)
...+... ...++...+..++......++||||++++.++.+++.|.+.|+.+..+||+++.++|.++++.|++|+++||
T Consensus 311 ~~~~~~~-~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vL 389 (475)
T PRK01297 311 EQHVYAV-AGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVL 389 (475)
T ss_pred cEEEEEe-cchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEE
Confidence 3222222 224567778888887777799999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 313 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
|||+++++|||+|++++||++++|.|+.+|+||+||+||.|..|.+++|++.+|...+..+.+
T Consensus 390 vaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~ 452 (475)
T PRK01297 390 VATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEE 452 (475)
T ss_pred EEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888777666544
No 17
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-52 Score=393.37 Aligned_cols=350 Identities=23% Similarity=0.295 Sum_probs=287.4
Q ss_pred ccccccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeE
Q 010563 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIV 81 (507)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~ 81 (507)
++...+...|.++.+.+++.+++++ .|+..|+++|.++||.++.|+|++..|.||||||.+|.+|++.+ ...+
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~ 132 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFA 132 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceE
Confidence 4456667788999999999999998 69999999999999999999999999999999999999999852 4689
Q ss_pred EEecChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH---hhh
Q 010563 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIH 154 (507)
Q Consensus 82 lvi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~ 154 (507)
+|++|||+|+.|..+.+..+ |+.+..+-++.......... ... ..+++ +||+.+.... +.+
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L----~kk--PhilV------aTPGrL~dhl~~Tkgf 200 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQL----SKK--PHILV------ATPGRLWDHLENTKGF 200 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHh----hcC--CCEEE------eCcHHHHHHHHhccCc
Confidence 99999999999999998886 57788888777665443222 222 44544 5555443332 234
Q ss_pred ccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCC---C
Q 010563 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---P 230 (507)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~---~ 230 (507)
+...++++|+||||++++.. |.+....+ ...+| +.+.+++|||.+.++.+-. ...+.+|..+..+... +
T Consensus 201 ~le~lk~LVlDEADrlLd~d--F~~~ld~I---Lk~ip~erqt~LfsATMt~kv~kL~--rasl~~p~~v~~s~ky~tv~ 273 (476)
T KOG0330|consen 201 SLEQLKFLVLDEADRLLDMD--FEEELDYI---LKVIPRERQTFLFSATMTKKVRKLQ--RASLDNPVKVAVSSKYQTVD 273 (476)
T ss_pred cHHHhHHHhhchHHhhhhhh--hHHHHHHH---HHhcCccceEEEEEeecchhhHHHH--hhccCCCeEEeccchhcchH
Confidence 45568999999999999854 77655554 44444 7899999999999998743 5567788766654322 2
Q ss_pred ce--EEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCC
Q 010563 231 NL--FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (507)
Q Consensus 231 ni--~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (507)
++ +|.+.+. ..+-..|..+++...+.++||||+|..++..++-.|+..|+.+..+||.|+++.|.-.++.|++|.
T Consensus 274 ~lkQ~ylfv~~---k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~ 350 (476)
T KOG0330|consen 274 HLKQTYLFVPG---KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGA 350 (476)
T ss_pred HhhhheEeccc---cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccC
Confidence 22 2322222 345567888888888899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 010563 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (507)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~ 380 (507)
..|||||+++++|+|+|.|++|||||+|.+..+|+||+||+||.|.+|.+|.+++.-|.+.+.+|......+
T Consensus 351 r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkk 422 (476)
T KOG0330|consen 351 RSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKK 422 (476)
T ss_pred CcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999888887655443
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.1e-51 Score=433.55 Aligned_cols=343 Identities=22% Similarity=0.323 Sum_probs=267.2
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-------------CCC
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KPG 79 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~-------------~~~ 79 (507)
+...|+.+++++.+.+.|++ .||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++. .++
T Consensus 119 pi~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 34557778899999999988 7999999999999999999999999999999999999999874 245
Q ss_pred eEEEecChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH-Hhhh
Q 010563 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIH 154 (507)
Q Consensus 80 ~~lvi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~~~~ 154 (507)
.+|||+||++|+.|+.+.++.+ ++....+.++...... ...+.. ..+|+++||+.+.. .+ ....
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q---~~~l~~---~~~IiV~TPgrL~~-----~l~~~~~ 266 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQ---LYRIQQ---GVELIVGTPGRLID-----LLSKHDI 266 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHH---HHHhcC---CCCEEEECHHHHHH-----HHHcCCc
Confidence 8999999999999888777764 3455555555443322 122222 36788888876532 11 1233
Q ss_pred ccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec-cCCCCc--
Q 010563 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPN-- 231 (507)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~n-- 231 (507)
....+.+|||||||++.+|| |++.+.. +...+++.+++++|||+++.+... ...+ +.++..+.. ....++
T Consensus 267 ~l~~v~~lViDEad~ml~~g--f~~~i~~---i~~~l~~~q~l~~SATl~~~v~~l-~~~~-~~~~~~i~~~~~~~~~~~ 339 (518)
T PLN00206 267 ELDNVSVLVLDEVDCMLERG--FRDQVMQ---IFQALSQPQVLLFSATVSPEVEKF-ASSL-AKDIILISIGNPNRPNKA 339 (518)
T ss_pred cchheeEEEeecHHHHhhcc--hHHHHHH---HHHhCCCCcEEEEEeeCCHHHHHH-HHHh-CCCCEEEEeCCCCCCCcc
Confidence 45668999999999999998 8876544 455568899999999999887653 3332 344544432 223332
Q ss_pred eEEEEEeecchhhHHHHHHHHHHhcC--CccEEEEeccchhHHHHHHHHHh-CCCceeEecCCCCHHHHHHHHHHHhcCC
Q 010563 232 LFYEVRYKDLLDDAYADLCSVLKANG--DTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSR 308 (507)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~~--~~~~IVf~~s~~~~~~l~~~L~~-~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (507)
+...+.... ...+...+.+++.... ..++||||+++..++.++..|.. .|+.+..|||++++++|..++++|++|+
T Consensus 340 v~q~~~~~~-~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~ 418 (518)
T PLN00206 340 VKQLAIWVE-TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGE 418 (518)
T ss_pred eeEEEEecc-chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCC
Confidence 222222222 2345556666665432 35799999999999999999975 5899999999999999999999999999
Q ss_pred ceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
++|||||+++++|||+|+|++|||||+|.++++|+||+|||||.|..|.+++|++.+|...+..+.+
T Consensus 419 ~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~ 485 (518)
T PLN00206 419 VPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVA 485 (518)
T ss_pred CCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998776665554
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.1e-50 Score=431.00 Aligned_cols=343 Identities=21% Similarity=0.304 Sum_probs=277.8
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEecChH
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLI 88 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~P~~ 88 (507)
..|..+.+++.+.++|.+ +||.+|+|+|.++|+.++.|+|+++.||||+|||++|++|++. ....+||++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 358888999999999998 7999999999999999999999999999999999999999874 245899999999
Q ss_pred HHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH-HhhhccCCccEE
Q 010563 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLV 162 (507)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~~~~~~~~l~~i 162 (507)
+|+.|+.+.++.+ ++.+..+.++........ .+. ...+|+++||+.+.. .+ ........+.+|
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~---~l~---~~~~IVVgTPgrl~d-----~l~r~~l~l~~l~~l 153 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR---ALR---QGPQIVVGTPGRLLD-----HLKRGTLDLSKLSGL 153 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHH---Hhc---CCCCEEEECHHHHHH-----HHHcCCcchhhceEE
Confidence 9999998887764 677777777765543322 222 236788888876532 12 122345668999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEec---cCCCCceEEEEEe
Q 010563 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRY 238 (507)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~ni~~~v~~ 238 (507)
|+||||+++.|| |..+ +..+...+| ..++++||||+++.+.......+ .++..+.. ....+++......
T Consensus 154 VlDEAd~ml~~g--f~~d---i~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l--~~~~~i~i~~~~~~~~~i~q~~~~ 226 (629)
T PRK11634 154 VLDEADEMLRMG--FIED---VETIMAQIPEGHQTALFSATMPEAIRRITRRFM--KEPQEVRIQSSVTTRPDISQSYWT 226 (629)
T ss_pred EeccHHHHhhcc--cHHH---HHHHHHhCCCCCeEEEEEccCChhHHHHHHHHc--CCCeEEEccCccccCCceEEEEEE
Confidence 999999999988 5544 445555555 67899999999987765433333 44443322 2234444433322
Q ss_pred ecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc
Q 010563 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (507)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (507)
.. ...+...|..++......++||||+|+..++.+++.|.+.|+.+..+||+|++.+|..++++|++|+++|||||+++
T Consensus 227 v~-~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~ 305 (629)
T PRK11634 227 VW-GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 (629)
T ss_pred ec-hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchH
Confidence 22 24567778888887777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 010563 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~ 377 (507)
++|||+|+|++|||||+|.++++|+||+||+||.|+.|.+++|+.+.|...++.+.+..
T Consensus 306 arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~ 364 (629)
T PRK11634 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 (629)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988888887654
No 20
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-50 Score=423.81 Aligned_cols=343 Identities=22% Similarity=0.322 Sum_probs=283.8
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----C--Ce-EEEecC
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P--GI-VLVVSP 86 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~-----~--~~-~lvi~P 86 (507)
..|+.+.+++.+.+.|.+ .||..|+|+|..+|+.++.|+|+++.|+||+|||++|.+|++.+ . .. +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 458889999999999999 79999999999999999999999999999999999999999853 1 12 899999
Q ss_pred hHHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhccCCc
Q 010563 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (507)
Q Consensus 87 ~~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~~l 159 (507)
|++|+.|..+.++.+ ++.+..+.++.+..... ..+..+ .+++++||-.+ ..+.+ ..+...+
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~---~~ivVaTPGRl------lD~i~~~~l~l~~v 175 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG---VDIVVATPGRL------LDLIKRGKLDLSGV 175 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC---CCEEEECccHH------HHHHHcCCcchhhc
Confidence 999999999998874 45667788777765544 333333 66766666544 33322 3456669
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccC-----CCCceE
Q 010563 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-----NRPNLF 233 (507)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-----~~~ni~ 233 (507)
.++|+|||+.|++.| |.++...+ ....| +.+++++|||.+..+.......+ .+|..+.... ..+++.
T Consensus 176 ~~lVlDEADrmLd~G--f~~~i~~I---~~~~p~~~qtllfSAT~~~~i~~l~~~~l--~~p~~i~v~~~~~~~~~~~i~ 248 (513)
T COG0513 176 ETLVLDEADRMLDMG--FIDDIEKI---LKALPPDRQTLLFSATMPDDIRELARRYL--NDPVEIEVSVEKLERTLKKIK 248 (513)
T ss_pred CEEEeccHhhhhcCC--CHHHHHHH---HHhCCcccEEEEEecCCCHHHHHHHHHHc--cCCcEEEEccccccccccCce
Confidence 999999999999998 87666555 44444 79999999999997665444444 3665444331 345565
Q ss_pred EEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEE
Q 010563 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (507)
Q Consensus 234 ~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLV 313 (507)
..+........+...|..+++.....++||||+|+..++.++..|...|+++..+||+|++.+|.++++.|++|+.+|||
T Consensus 249 q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLV 328 (513)
T COG0513 249 QFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLV 328 (513)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 55555544346899999999988877899999999999999999999999999999999999999999999999999999
Q ss_pred EeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccc-hHHHHHHHHHhc
Q 010563 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKN 377 (507)
Q Consensus 314 aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~-d~~~~~~~~~~~ 377 (507)
||+++++|||+|+|.+|||||+|.+++.|+||+||+||.|..|.++.|+.+. |...+..+.+..
T Consensus 329 aTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~ 393 (513)
T COG0513 329 ATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRL 393 (513)
T ss_pred EechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 888777776654
No 21
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.4e-49 Score=408.55 Aligned_cols=344 Identities=20% Similarity=0.285 Sum_probs=268.6
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEecChH
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLI 88 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~P~~ 88 (507)
..|+.+++++.+.+.|.. +||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++. ...++||++|++
T Consensus 28 ~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred CCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 567778899999999988 7999999999999999999999999999999999999999875 245799999999
Q ss_pred HHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEE
Q 010563 89 ALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (507)
Q Consensus 89 ~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iVi 164 (507)
+|+.|+.+.++.++ +.+....++..... ....+.. ..+++++||+.+.... .........+++|||
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~---~~~Ivv~Tp~~l~~~l----~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRD---DINKLKA---GVHMVVGTPGRVYDMI----DKRHLRVDDLKLFIL 176 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHH---HHHHHcC---CCCEEEECcHHHHHHH----HhCCcccccccEEEE
Confidence 99999988887754 34444444433322 1222222 2678888888653211 112233566899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec---cCCCCceEEEEEeecc
Q 010563 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKDL 241 (507)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~ni~~~v~~~~~ 241 (507)
||||++.+++ |+..+..+ +....++.+++++|||++..........+ ..+..+.. .....++...+.....
T Consensus 177 DEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (401)
T PTZ00424 177 DEADEMLSRG--FKGQIYDV--FKKLPPDVQVALFSATMPNEILELTTKFM--RDPKRILVKKDELTLEGIRQFYVAVEK 250 (401)
T ss_pred ecHHHHHhcc--hHHHHHHH--HhhCCCCcEEEEEEecCCHHHHHHHHHHc--CCCEEEEeCCCCcccCCceEEEEecCh
Confidence 9999999987 55443332 23334578999999999987665444433 33433221 1122333333333333
Q ss_pred hhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccccc
Q 010563 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (507)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (507)
...+...+..+++.....++||||+|++.++.+++.|.+.++.+..+||+|+.++|..+++.|++|+++|||||+++++|
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~G 330 (401)
T PTZ00424 251 EEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARG 330 (401)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCC
Confidence 34456667777776666789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
||+|++++||++++|.|...|+||+|||||.|+.|.|++|+++.|...++.+.+
T Consensus 331 iDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~ 384 (401)
T PTZ00424 331 IDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIER 384 (401)
T ss_pred cCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887776654
No 22
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.7e-49 Score=387.43 Aligned_cols=342 Identities=23% Similarity=0.315 Sum_probs=277.5
Q ss_pred ccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---------------
Q 010563 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------------- 76 (507)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~--------------- 76 (507)
++...|++.+++.+++++++. .||..|+|+|..||+..++.+|+|.++.||||||++|++|++.
T Consensus 242 nplrnwEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~ 320 (673)
T KOG0333|consen 242 NPLRNWEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNI 320 (673)
T ss_pred ccccChhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcc
Confidence 456679999999999999988 5999999999999999999999999999999999999998863
Q ss_pred CCCeEEEecChHHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHH-H-
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-L- 150 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~-l- 150 (507)
.++.++|+.||++|++|..+.-.+ +|+++..+-++.+..+..-. +..| +.+++ +||+.+.. |
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fq---ls~g---ceivi------atPgrLid~Le 388 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQ---LSMG---CEIVI------ATPGRLIDSLE 388 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhh---hhcc---ceeee------cCchHHHHHHH
Confidence 267899999999999998887666 46777777777766554221 2222 45544 45543322 2
Q ss_pred HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHh-------------------CC--C--CCEEEEeecCChhh
Q 010563 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-------------------LP--D--VPILALTATAAPKV 207 (507)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-------------------~~--~--~~~i~lSAT~~~~~ 207 (507)
....-+....+||+|||+.+.++| |.|+|..+..-... +. . .+.+.||||.++.+
T Consensus 389 nr~lvl~qctyvvldeadrmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~v 466 (673)
T KOG0333|consen 389 NRYLVLNQCTYVVLDEADRMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAV 466 (673)
T ss_pred HHHHHhccCceEeccchhhhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHH
Confidence 222334557899999999999999 99998776442211 11 1 46899999999998
Q ss_pred HHHHHHHhCCCCCeEEeccC---CCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCc
Q 010563 208 QKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (507)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~---~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~ 284 (507)
...... .+.+|.++..++ ..+.+...|..... +.+...|.++|.+....++|||+|+++.|+.||+.|.+.|+.
T Consensus 467 erlar~--ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~ 543 (673)
T KOG0333|consen 467 ERLARS--YLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYK 543 (673)
T ss_pred HHHHHH--HhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccce
Confidence 774444 356777665433 23444555554443 456899999999988889999999999999999999999999
Q ss_pred eeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEecc
Q 010563 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (507)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~ 364 (507)
+..|||+-++++|+.+++.|++|..+|||||+++|+|||+|||.+||+||+++|+++|.||+||+||+|+.|.++.||++
T Consensus 544 ~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~ 623 (673)
T KOG0333|consen 544 VTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTP 623 (673)
T ss_pred EEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHH
Q 010563 365 DDRRRME 371 (507)
Q Consensus 365 ~d~~~~~ 371 (507)
.|-..+.
T Consensus 624 ~dt~v~y 630 (673)
T KOG0333|consen 624 ADTAVFY 630 (673)
T ss_pred chhHHHH
Confidence 9855443
No 23
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-49 Score=359.56 Aligned_cols=348 Identities=20% Similarity=0.330 Sum_probs=281.0
Q ss_pred cccccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEE
Q 010563 9 QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVL 82 (507)
Q Consensus 9 ~~~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~l 82 (507)
+.......|+.+++.+++++.+.. +||..|..+|+.||+.+++|+|+++++..|+|||.+|.+..+. +...++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~l 99 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQAL 99 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEE
Confidence 455667789999999999999998 6999999999999999999999999999999999998877764 346799
Q ss_pred EecChHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhcc
Q 010563 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (507)
Q Consensus 83 vi~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~ 156 (507)
|++||++|+.|..+....+| +.+...-++.+..+..+ .+..| ..++. .||+....+.+ ....
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedik---kld~G---~hvVs------GtPGrv~dmikr~~L~t 167 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIK---KLDYG---QHVVS------GTPGRVLDMIKRRSLRT 167 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhh---hhccc---ceEee------CCCchHHHHHHhccccc
Confidence 99999999999888888865 45544444444333221 22222 34444 45554444433 2234
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccC---CCCce
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNL 232 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~ni 232 (507)
+.+.++|+|||+.+++-| |. .++-.+...+| +.|++++|||++.++.+...+ .+.+|+.+-... ....+
T Consensus 168 r~vkmlVLDEaDemL~kg--fk---~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~k--fmtdpvrilvkrdeltlEgI 240 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNKG--FK---EQIYDIYRYLPPGAQVVLVSATLPHEILEMTEK--FMTDPVRILVKRDELTLEGI 240 (400)
T ss_pred cceeEEEeccHHHHHHhh--HH---HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHH--hcCCceeEEEecCCCchhhh
Confidence 558999999999999877 44 44555556666 899999999999999885444 456675443322 22223
Q ss_pred EEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEE
Q 010563 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (507)
Q Consensus 233 ~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VL 312 (507)
...+...+..+.+++.|+++.....-.+++|||||++.+.+|.+.+++.++.+...||+|++++|..+.+.|++|+.+||
T Consensus 241 Kqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvL 320 (400)
T KOG0328|consen 241 KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVL 320 (400)
T ss_pred hhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEE
Confidence 33344444556799999999888777789999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 313 VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
++|++.++|+|+|.|.+||+||+|.+.+.|+||+||.||.|+.|.++-|+..+|.+.++.+.+.
T Consensus 321 itTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ 384 (400)
T KOG0328|consen 321 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQY 384 (400)
T ss_pred EEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988877653
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.7e-48 Score=422.52 Aligned_cols=339 Identities=20% Similarity=0.213 Sum_probs=253.2
Q ss_pred CChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----CCeEEEecChHHHHHHH
Q 010563 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQ 94 (507)
Q Consensus 20 ~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~-----~~~~lvi~P~~~L~~q~ 94 (507)
..+++.+.+.|++ .|+..|+++|.++|+.+++|+|+++.+|||||||+||++|++.. ..++|||+||++|++||
T Consensus 19 ~~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 19 AWAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQ 97 (742)
T ss_pred CcCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHH
Confidence 3467899999988 69999999999999999999999999999999999999999842 46899999999999999
Q ss_pred HHHHHHc---CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 95 VIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 95 ~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
.+.++++ ++.+..+.+..+...+.. +.. ..+++++||+++................++++|||||||.+.
T Consensus 98 ~~~l~~l~~~~i~v~~~~Gdt~~~~r~~----i~~---~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 98 LRAVRELTLRGVRPATYDGDTPTEERRW----ARE---HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHHhccCCeEEEEEeCCCCHHHHHH----Hhc---CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 9999986 456666666666544322 222 268999999876431110000000114568999999999986
Q ss_pred c-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC--CCceEEEEE-ee-------
Q 010563 172 S-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN--RPNLFYEVR-YK------- 239 (507)
Q Consensus 172 ~-~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~--~~ni~~~v~-~~------- 239 (507)
. +|.++...+.+|..+...++ +.+++++|||.++... ....+.- .+..+..... +....+.+. +.
T Consensus 171 g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~--~~~~l~g-~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 171 GVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA--AASRLIG-APVVAVTEDGSPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH--HHHHHcC-CCeEEECCCCCCcCceEEEEecCCccccccc
Confidence 5 23334444555666665554 5789999999988743 2333322 3333322211 111211111 10
Q ss_pred -------cchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC--------CCceeEecCCCCHHHHHHHHHHH
Q 010563 240 -------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDW 304 (507)
Q Consensus 240 -------~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f 304 (507)
....++...+..+++. +.++||||+|++.++.++..|++. +..+..|||++++++|..++++|
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred cccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 1112345556666654 468999999999999999998763 56788999999999999999999
Q ss_pred hcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEec--cchHHHHH
Q 010563 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG--MDDRRRME 371 (507)
Q Consensus 305 ~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~--~~d~~~~~ 371 (507)
++|++++||||+++++|||+|++++|||+++|.+.++|+||+|||||.|+.|.++++.. +.|...+.
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVH 394 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999986 34544444
No 25
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-48 Score=375.30 Aligned_cols=335 Identities=22% Similarity=0.329 Sum_probs=274.9
Q ss_pred CChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---------CCC--eEEEecChH
Q 010563 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------KPG--IVLVVSPLI 88 (507)
Q Consensus 20 ~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---------~~~--~~lvi~P~~ 88 (507)
.+|++++..++.. +||..++|.|..+|+.+++++|+.|.+|||||||++|++|++. .++ .+|||+||+
T Consensus 11 ~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTR 89 (567)
T KOG0345|consen 11 PPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTR 89 (567)
T ss_pred CCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcH
Confidence 3466999999998 7999999999999999999999999999999999999999974 133 689999999
Q ss_pred HHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhh----hccCCc
Q 010563 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLL 159 (507)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~----~~~~~l 159 (507)
+|+.|..+.+..| .+.+..+.++.+..+.... +.... ..|+++|| |++..+.+. .+...+
T Consensus 90 ELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~---fkee~--~nIlVgTP------GRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 90 ELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKT---FKEEG--PNILVGTP------GRLLDILQREAEKLSFRSL 158 (567)
T ss_pred HHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHH---HHHhC--CcEEEeCc------hhHHHHHhchhhhcccccc
Confidence 9999998887765 4457777777655444332 23332 45655555 544444332 345569
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCC----C---c
Q 010563 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR----P---N 231 (507)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~----~---n 231 (507)
.++|+||||+++++| |. ..+..+...+| .+..=+||||.+..+.+ ....|+++|..+...... | .
T Consensus 159 e~LVLDEADrLldmg--Fe---~~~n~ILs~LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~tPS~L~ 231 (567)
T KOG0345|consen 159 EILVLDEADRLLDMG--FE---ASVNTILSFLPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSATPSSLA 231 (567)
T ss_pred ceEEecchHhHhccc--HH---HHHHHHHHhcccccccccccchhhHHHHH--HHHhhccCceeeeecccccccCchhhc
Confidence 999999999999999 55 55566677777 56778999999999877 556788999866543222 2 2
Q ss_pred eEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC--CCceeEecCCCCHHHHHHHHHHHhcCCc
Q 010563 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRK 309 (507)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (507)
++|.+... ..++..+.++|.....+++|||.+|...++..+..|... ..++..+||.|.+..|..+++.|.+...
T Consensus 232 ~~Y~v~~a---~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~ 308 (567)
T KOG0345|consen 232 LEYLVCEA---DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSN 308 (567)
T ss_pred ceeeEecH---HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccC
Confidence 34444433 688999999999988899999999999999999998875 6788999999999999999999999888
Q ss_pred eEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
.||+||+++++|||+|+|++||+||+|.++..|.||+||+||.|+.|.+++|..+.+...++++--.
T Consensus 309 ~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 309 GVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred ceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999888888777543
No 26
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-48 Score=380.01 Aligned_cols=343 Identities=22% Similarity=0.346 Sum_probs=275.4
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------CCeEEEe
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVV 84 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~---------~~~~lvi 84 (507)
...|..+.|+..+++++.. +||..|+|+|...||..+.|+|++.+|.||+|||.+|++|+|.+ ..++||+
T Consensus 180 ~~sF~~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL 258 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVL 258 (691)
T ss_pred hhhHHhcccchHHHHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEE
Confidence 4578889999999999988 79999999999999999999999999999999999999999863 3479999
Q ss_pred cChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhH-HHHHh--hhccC
Q 010563 85 SPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKK--IHSRG 157 (507)
Q Consensus 85 ~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~-~~l~~--~~~~~ 157 (507)
+||++|+.|.....+.+ .|.+....++...+....... + . .+|++. ||+++ ..+.+ ..+..
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR---s-~--PDIVIA------TPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR---S-R--PDIVIA------TPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh---h-C--CCEEEe------cchhHHHHhccCCCcccc
Confidence 99999998877665552 356666666666655443332 2 2 455544 55533 33322 23355
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCC---CceE
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---PNLF 233 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~---~ni~ 233 (507)
.+.++|+|||++|++-| |+.. +..+...+| +.|.++||||++..+.. ...+.+++|+.+....+. +++.
T Consensus 327 siEVLvlDEADRMLeeg--Fade---mnEii~lcpk~RQTmLFSATMteeVkd--L~slSL~kPvrifvd~~~~~a~~Lt 399 (691)
T KOG0338|consen 327 SIEVLVLDEADRMLEEG--FADE---MNEIIRLCPKNRQTMLFSATMTEEVKD--LASLSLNKPVRIFVDPNKDTAPKLT 399 (691)
T ss_pred ceeEEEechHHHHHHHH--HHHH---HHHHHHhccccccceeehhhhHHHHHH--HHHhhcCCCeEEEeCCccccchhhh
Confidence 68899999999999988 7654 455555666 78999999999999877 566778888765443321 2232
Q ss_pred ---EEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCce
Q 010563 234 ---YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (507)
Q Consensus 234 ---~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (507)
..+++. ...+.-..|..++.......+|||+.|++.|+++.-.|--.|+++..+||+|++.+|.+.++.|++++++
T Consensus 400 QEFiRIR~~-re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid 478 (691)
T KOG0338|consen 400 QEFIRIRPK-REGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID 478 (691)
T ss_pred HHHheeccc-cccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC
Confidence 222221 1123334455555555566899999999999999999988999999999999999999999999999999
Q ss_pred EEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 010563 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~ 377 (507)
|||||+++++|+|++.|..||||.+|.+.+.|+||+||+.|+|+.|.++.|...+|++.++.+++..
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998874
No 27
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.2e-47 Score=372.50 Aligned_cols=346 Identities=20% Similarity=0.260 Sum_probs=278.0
Q ss_pred ccccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----------CCC
Q 010563 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPG 79 (507)
Q Consensus 10 ~~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----------~~~ 79 (507)
+......++...+++...+++++ +||..+++.|...|+.++.|+|+++.|.||+|||++|++|+++ .+-
T Consensus 77 s~~~~~~f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~ 155 (543)
T KOG0342|consen 77 SITTTFRFEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGT 155 (543)
T ss_pred chhhhhHhhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCe
Confidence 34556778889999999999999 7999999999999999999999999999999999999999984 134
Q ss_pred eEEEecChHHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhh
Q 010563 80 IVLVVSPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH 154 (507)
Q Consensus 80 ~~lvi~P~~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~ 154 (507)
.++|||||++|+.|....++.+ ++.+..+.++.....- .+.+.. .++++++||..+. ..+.+..
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e---~~kl~k---~~niliATPGRLl-----DHlqNt~ 224 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE---ADKLVK---GCNILIATPGRLL-----DHLQNTS 224 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH---HHHhhc---cccEEEeCCchHH-----hHhhcCC
Confidence 6999999999999999888773 4555555555443322 222333 2677777666432 1111110
Q ss_pred --ccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC----
Q 010563 155 --SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---- 228 (507)
Q Consensus 155 --~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---- 228 (507)
-...+.++|+||||++++.| ||.++.++..+.. ..++.++||||.++++.+...-.|.- +|..+...-.
T Consensus 225 ~f~~r~~k~lvlDEADrlLd~G--F~~di~~Ii~~lp--k~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~~ 299 (543)
T KOG0342|consen 225 GFLFRNLKCLVLDEADRLLDIG--FEEDVEQIIKILP--KQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGERE 299 (543)
T ss_pred cchhhccceeEeecchhhhhcc--cHHHHHHHHHhcc--ccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCcc
Confidence 11236789999999999999 9987777755554 37889999999999998754444433 5655543222
Q ss_pred ---CCceEEEEEeecchhhHHHHHHHHHHhcCC-ccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHH
Q 010563 229 ---RPNLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304 (507)
Q Consensus 229 ---~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~-~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f 304 (507)
+-+--|.+... ...+..+..+|+++.. .++||||+|...+..+++.|+...++|..+||++++..|..+..+|
T Consensus 300 The~l~Qgyvv~~~---~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F 376 (543)
T KOG0342|consen 300 THERLEQGYVVAPS---DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEF 376 (543)
T ss_pred hhhcccceEEeccc---cchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHH
Confidence 12223333333 3457788888888765 7999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 305 ~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
.+.+.-|||||++.++|+|+|+|++||+||+|.++++|+||+||+||.|..|.++++..+.+...++.+.+
T Consensus 377 ~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 377 CKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred hhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888774
No 28
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-47 Score=375.01 Aligned_cols=339 Identities=22% Similarity=0.319 Sum_probs=281.4
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEEE
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLV 83 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~----------~~~~lv 83 (507)
..+|..++++....+.|+.. +|..++.+|.++|+..+.|+|++..|.||||||++|++|.|.. +--+||
T Consensus 68 ~~kF~dlpls~~t~kgLke~-~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalI 146 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEA-KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALI 146 (758)
T ss_pred hhhHHhCCCchHHHHhHhhc-CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEE
Confidence 45789999999999999994 9999999999999999999999999999999999999999863 335899
Q ss_pred ecChHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhccC
Q 010563 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRG 157 (507)
Q Consensus 84 i~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~ 157 (507)
|+|||+|+.|..+.|++.| +.+..+.++......... + ...+|+++||..+.. .+.. ..+..
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eR---i----~~mNILVCTPGRLLQ-----Hmde~~~f~t~ 214 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELER---I----SQMNILVCTPGRLLQ-----HMDENPNFSTS 214 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHh---h----hcCCeEEechHHHHH-----HhhhcCCCCCC
Confidence 9999999999999999965 455555555543332221 1 137787777765432 2222 22345
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC-----CCc
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-----RPN 231 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-----~~n 231 (507)
++.++|+|||++++++| |+ ..|..+...+| ..|.++||||.+..+.. ...|.+.+|.++....+ ..+
T Consensus 215 ~lQmLvLDEADR~LDMG--Fk---~tL~~Ii~~lP~~RQTLLFSATqt~svkd--LaRLsL~dP~~vsvhe~a~~atP~~ 287 (758)
T KOG0343|consen 215 NLQMLVLDEADRMLDMG--FK---KTLNAIIENLPKKRQTLLFSATQTKSVKD--LARLSLKDPVYVSVHENAVAATPSN 287 (758)
T ss_pred cceEEEeccHHHHHHHh--HH---HHHHHHHHhCChhheeeeeecccchhHHH--HHHhhcCCCcEEEEeccccccChhh
Confidence 58899999999999999 66 55666777777 68999999999999877 66788889877654311 223
Q ss_pred e--EEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC--CCceeEecCCCCHHHHHHHHHHHhcC
Q 010563 232 L--FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISS 307 (507)
Q Consensus 232 i--~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g 307 (507)
+ +|.+.+. .+++..|..+++.+...++|||+.|.+++..+++.+.+. |+++..+||.|++..|.++..+|...
T Consensus 288 L~Q~y~~v~l---~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~ 364 (758)
T KOG0343|consen 288 LQQSYVIVPL---EDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK 364 (758)
T ss_pred hhheEEEEeh---hhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh
Confidence 3 3333333 689999999999999999999999999999999999875 99999999999999999999999999
Q ss_pred CceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 308 ~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
..-||+||+++++|+|+|.|++||++|+|.++++|+||+||+.|.+..|.++++..+++.+.+-.-++
T Consensus 365 ~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 365 RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999665544443
No 29
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-47 Score=354.52 Aligned_cols=352 Identities=20% Similarity=0.231 Sum_probs=270.3
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEecC
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P 86 (507)
....|+.+++.+.+.+.|+. +|+..++|+|..+|+.+++|+|++.+|.||||||++|.+|++.+ +-.++|++|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTP 83 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTP 83 (442)
T ss_pred ccCchhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecc
Confidence 45678999999999999998 79999999999999999999999999999999999999999975 346899999
Q ss_pred hHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEE
Q 010563 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (507)
Q Consensus 87 ~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~i 162 (507)
|++|+.|..++|..+| +++..+.++...-.... .... ...++++||+.+.-+-.-+.=.......++.++
T Consensus 84 TrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~----~L~~--rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAA----ILSD--RPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhh----hccc--CCCeEecCccccccccccCCccchhhhhceeeE
Confidence 9999999999998854 56666666654332221 1122 367888888876543211100111223458999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCCC-CCEEEEeecCChhhHHHHHHHhCCCCC--eEEeccCCC---Cce--EE
Q 010563 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNR---PNL--FY 234 (507)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~-~~~i~lSAT~~~~~~~~i~~~l~~~~~--~~~~~~~~~---~ni--~~ 234 (507)
|+|||+.+.+-. |- ..|..+..-.|. ++.++||||.+....... ......+ ..+....+. ..+ .|
T Consensus 158 VlDEADrvL~~~--f~---d~L~~i~e~lP~~RQtLlfSATitd~i~ql~--~~~i~k~~a~~~e~~~~vstvetL~q~y 230 (442)
T KOG0340|consen 158 VLDEADRVLAGC--FP---DILEGIEECLPKPRQTLLFSATITDTIKQLF--GCPITKSIAFELEVIDGVSTVETLYQGY 230 (442)
T ss_pred Eecchhhhhccc--hh---hHHhhhhccCCCccceEEEEeehhhHHHHhh--cCCcccccceEEeccCCCCchhhhhhhe
Confidence 999999998854 44 345555566665 489999999987765421 1112221 111111111 111 22
Q ss_pred EEEeecchhhHHHHHHHHHHh---cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceE
Q 010563 235 EVRYKDLLDDAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (507)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~---~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (507)
.+... ..+-..|..+|+. ...+.++||+++..+|+.|+..|+..++.+..+|+-|++++|...+.+|+++..+|
T Consensus 231 I~~~~---~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~i 307 (442)
T KOG0340|consen 231 ILVSI---DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARI 307 (442)
T ss_pred eecch---hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccE
Confidence 22222 2223334444443 24678999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCC
Q 010563 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (507)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~ 381 (507)
||||+++++|+|+|.|.+||||++|.++.+|+||+||+.|+|+.|.++.++...|.+.+..+.+....+.
T Consensus 308 liaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl 377 (442)
T KOG0340|consen 308 LIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKL 377 (442)
T ss_pred EEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999988765543
No 30
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-46 Score=358.38 Aligned_cols=336 Identities=21% Similarity=0.338 Sum_probs=275.6
Q ss_pred CChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeEEEecCh
Q 010563 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPL 87 (507)
Q Consensus 20 ~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------------~~~~lvi~P~ 87 (507)
+.--+++.+.+++ .||.+|+|+|.+|++.+++|+|++.+|.||+|||++|++|.+.. ...+||++||
T Consensus 225 Fq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~pt 303 (629)
T KOG0336|consen 225 FQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPT 303 (629)
T ss_pred HhhhHHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEecc
Confidence 5555778888888 59999999999999999999999999999999999999998632 4579999999
Q ss_pred HHHHHHHHHHHHH---cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH--HhhhccCCccEE
Q 010563 88 IALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLNLV 162 (507)
Q Consensus 88 ~~L~~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l--~~~~~~~~l~~i 162 (507)
++|+.|.--..++ .|.....+.++....+. .+++..+ ..+++ +||+.+..| ....++..+.++
T Consensus 304 reLalqie~e~~kysyng~ksvc~ygggnR~eq---ie~lkrg---veiii------atPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 304 RELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQ---IEDLKRG---VEIII------ATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred HHHHHHHHhHHhHhhhcCcceEEEecCCCchhH---HHHHhcC---ceEEe------eCCchHhhhhhcCeeeeeeeEEE
Confidence 9999887766665 47777777777655443 4455554 55544 455555555 345566778999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeE-EeccCCCCce---EEEEEe
Q 010563 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNL---FYEVRY 238 (507)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~~~ni---~~~v~~ 238 (507)
|+|||+.++++| |.|.++++ +....|+.+.++.|||+++.+.+.... .+++|.+ +..+.+.... ...+ .
T Consensus 372 VlDEADrMLDMg--FEpqIrki--lldiRPDRqtvmTSATWP~~VrrLa~s--Y~Kep~~v~vGsLdL~a~~sVkQ~i-~ 444 (629)
T KOG0336|consen 372 VLDEADRMLDMG--FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRRLAQS--YLKEPMIVYVGSLDLVAVKSVKQNI-I 444 (629)
T ss_pred Eecchhhhhccc--ccHHHHHH--hhhcCCcceeeeecccCchHHHHHHHH--hhhCceEEEecccceeeeeeeeeeE-E
Confidence 999999999999 99999887 777789999999999999999885444 4466653 4444442211 1111 2
Q ss_pred ecchhhHHHHHHHHHHhc-CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc
Q 010563 239 KDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (507)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~-~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (507)
.....++++.+..+++.. ...++||||..+..++.|...|.-.|+.+-.+||+-++.+|+..++.|++|+++|||||+.
T Consensus 445 v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDl 524 (629)
T KOG0336|consen 445 VTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDL 524 (629)
T ss_pred ecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEech
Confidence 233457777777777664 4568999999999999999999989999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
+++|+|+|||.+|++||+|.++++|+||+||+||.|+.|.++.|+...|....+.+++
T Consensus 525 aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ 582 (629)
T KOG0336|consen 525 ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQ 582 (629)
T ss_pred hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887776654
No 31
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-46 Score=364.39 Aligned_cols=347 Identities=21% Similarity=0.286 Sum_probs=266.9
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------------CCeE
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIV 81 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------------~~~~ 81 (507)
+..|..+++++.+...|...++++.++.+|.++|+.+++|+|++|.++||+|||++|++|++.. +..+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 4568889999999999999999999999999999999999999999999999999999999742 4579
Q ss_pred EEecChHHHHHHHHHHHHHcCCceEEecCC--CCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH--hhhccC
Q 010563 82 LVVSPLIALMENQVIGLKEKGIAGEFLSST--QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRG 157 (507)
Q Consensus 82 lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~--~~~~~~ 157 (507)
|||+|||+|+.|.++.++++.-+...+-.+ ..+..+......+..| ++|+++||..+.- .|. ......
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG---iNILIgTPGRLvD-----HLknT~~i~~s 286 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG---INILIGTPGRLVD-----HLKNTKSIKFS 286 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC---ceEEEcCchHHHH-----HHhccchheee
Confidence 999999999999999998864333222211 1111222222334444 7787777765432 221 233345
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-----------CCCEEEEeecCChhhHHHHHHHhCCCCCeEEec-
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----------DVPILALTATAAPKVQKDVMESLCLQNPLVLKS- 225 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-----------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~- 225 (507)
++.+||+||||++.+.| |..++..|..+....+ ..+-+++|||++..+.+ ...+.+.+|..+..
T Consensus 287 ~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~I~ld 362 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVYISLD 362 (708)
T ss_pred eeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCceeeecc
Confidence 58999999999999999 8888887776664321 24579999999999877 67778888887761
Q ss_pred ----cCC----------CC-------------ce--EEEEEeecchhhHHHHHHHHH----HhcCCccEEEEeccchhHH
Q 010563 226 ----SFN----------RP-------------NL--FYEVRYKDLLDDAYADLCSVL----KANGDTCAIVYCLERTTCD 272 (507)
Q Consensus 226 ----~~~----------~~-------------ni--~~~v~~~~~~~~~~~~l~~~l----~~~~~~~~IVf~~s~~~~~ 272 (507)
..+ .+ ++ .|.+++. .-.+-.|..+| +.....++|||+.+.+.++
T Consensus 363 ~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPp---KLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~Ve 439 (708)
T KOG0348|consen 363 KSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPP---KLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVE 439 (708)
T ss_pred chhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCC---chhHHHHHHHHHHHhhhhhhceeEEEEechhHHH
Confidence 111 00 01 1222211 11222333333 4455668999999999999
Q ss_pred HHHHHHHhC----------------------CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEE
Q 010563 273 ELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (507)
Q Consensus 273 ~l~~~L~~~----------------------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~V 330 (507)
--+..|.+. +.++..+||+|++++|..+++.|...+--||+||+++++|+|+|+|++|
T Consensus 440 FHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~v 519 (708)
T KOG0348|consen 440 FHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLV 519 (708)
T ss_pred HHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeE
Confidence 888887641 2356789999999999999999999888899999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 331 I~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
|.||+|.+.++|+||+||+.|.|..|.+++|..|.+.+.++.+..
T Consensus 520 VQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 520 VQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred EEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 999999999999999999999999999999999999997776544
No 32
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-47 Score=349.70 Aligned_cols=344 Identities=23% Similarity=0.308 Sum_probs=277.0
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEecCh
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P~ 87 (507)
.+.|+++.+..+++..+.+ .||+.|.|+|+++|+.++.|+|+++-|..|+|||.+|.+|.+.+ .-.++|++|+
T Consensus 84 G~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPt 162 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPT 162 (459)
T ss_pred CccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeec
Confidence 4568889999999999988 59999999999999999999999999999999999999999975 2368999999
Q ss_pred HHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhccCCccE
Q 010563 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (507)
Q Consensus 88 ~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~~l~~ 161 (507)
++|+.|..+..+. .|+.+....++++... ++-.-...+.+ +++||++...|.+ ........+
T Consensus 163 relALQtSqvc~~lskh~~i~vmvttGGT~lrD------DI~Rl~~~VH~------~vgTPGRIlDL~~KgVa~ls~c~~ 230 (459)
T KOG0326|consen 163 RELALQTSQVCKELSKHLGIKVMVTTGGTSLRD------DIMRLNQTVHL------VVGTPGRILDLAKKGVADLSDCVI 230 (459)
T ss_pred chhhHHHHHHHHHHhcccCeEEEEecCCccccc------ceeeecCceEE------EEcCChhHHHHHhcccccchhceE
Confidence 9999988877666 4677777776665432 22222223444 4455565555532 333455679
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc--CC--CCceEEEE
Q 010563 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--FN--RPNLFYEV 236 (507)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--~~--~~ni~~~v 236 (507)
+|+|||+.+++- +|.+....| ...+| +.+++++|||.+-.+...+.+.+ .+|..+..- .. --.-+|.+
T Consensus 231 lV~DEADKlLs~--~F~~~~e~l---i~~lP~~rQillySATFP~tVk~Fm~~~l--~kPy~INLM~eLtl~GvtQyYaf 303 (459)
T KOG0326|consen 231 LVMDEADKLLSV--DFQPIVEKL---ISFLPKERQILLYSATFPLTVKGFMDRHL--KKPYEINLMEELTLKGVTQYYAF 303 (459)
T ss_pred EEechhhhhhch--hhhhHHHHH---HHhCCccceeeEEecccchhHHHHHHHhc--cCcceeehhhhhhhcchhhheee
Confidence 999999999874 477665554 45556 68899999999999888666654 566555321 11 11224443
Q ss_pred EeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC
Q 010563 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (507)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (507)
+.. ..++.-|..++.+..-...||||||.+.+|-+|..+.+.|++|.++|+.|.++.|..+...|++|.++.||||+
T Consensus 304 V~e---~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctD 380 (459)
T KOG0326|consen 304 VEE---RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTD 380 (459)
T ss_pred ech---hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehh
Confidence 322 35666677777666667799999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 010563 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (507)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~ 380 (507)
.|.+|||+++|.+||+||+|++.++|+||+||+||.|..|.++.+.+.+|+..+..+.++...+
T Consensus 381 L~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtE 444 (459)
T KOG0326|consen 381 LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTE 444 (459)
T ss_pred hhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999998876554
No 33
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-44 Score=344.81 Aligned_cols=347 Identities=22% Similarity=0.326 Sum_probs=273.5
Q ss_pred ccccccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----------
Q 010563 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------- 76 (507)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----------- 76 (507)
....+....|+++++++.+++++.+ .||..|+-+|..||+.+++|+|+++.|.||||||++|++|.++
T Consensus 12 ~~ee~~~ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~ 90 (569)
T KOG0346|consen 12 QVEESKEKTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDG 90 (569)
T ss_pred chhhhhhccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccc
Confidence 3344455689999999999999999 6999999999999999999999999999999999999999985
Q ss_pred -CCCeEEEecChHHHHHHHHHHHHHc------CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHH
Q 010563 77 -KPGIVLVVSPLIALMENQVIGLKEK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149 (507)
Q Consensus 77 -~~~~~lvi~P~~~L~~q~~~~l~~~------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~ 149 (507)
.+..++|++||++|++|....+.++ -++++-+.+..+......+ ..+. .+|+++||-.+ ..
T Consensus 91 e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~----L~d~--pdIvV~TP~~l------l~ 158 (569)
T KOG0346|consen 91 EQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVA----LMDL--PDIVVATPAKL------LR 158 (569)
T ss_pred cccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHH----HccC--CCeEEeChHHH------HH
Confidence 2457999999999999987776653 2444445544444333322 2222 45555555433 22
Q ss_pred HHh---hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEec
Q 010563 150 LKK---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (507)
Q Consensus 150 l~~---~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 225 (507)
+.. ......+.++|+||||.+..+| |..+ +..+...+| ..|.++||||++..+.. .+.+.+.+|.++..
T Consensus 159 ~~~~~~~~~~~~l~~LVvDEADLllsfG--Yeed---lk~l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLkl 231 (569)
T KOG0346|consen 159 HLAAGVLEYLDSLSFLVVDEADLLLSFG--YEED---LKKLRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILKL 231 (569)
T ss_pred HHhhccchhhhheeeEEechhhhhhhcc--cHHH---HHHHHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEEe
Confidence 211 1234558999999999999999 5544 455555666 56889999999999877 77888999988765
Q ss_pred cCC----CCce-EEEEEeecchhhHHHHHHHHHHh-cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHH
Q 010563 226 SFN----RPNL-FYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299 (507)
Q Consensus 226 ~~~----~~ni-~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~ 299 (507)
.-. ..++ .|.+... .++++..+..+++- .-.++.|||+||.+.|.++.-.|.+-|++...++|.|+...|..
T Consensus 232 ~e~el~~~dqL~Qy~v~cs--e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~H 309 (569)
T KOG0346|consen 232 TEGELPNPDQLTQYQVKCS--EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCH 309 (569)
T ss_pred ccccCCCcccceEEEEEec--cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhh
Confidence 321 1223 3333332 46788877777764 23467999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEeC-----------------------------------cccccccCCCccEEEEeCCCCCHHHHHH
Q 010563 300 VLDDWISSRKQVVVATV-----------------------------------AFGMGIDRKDVRLVCHFNIPKSMEAFYQ 344 (507)
Q Consensus 300 ~~~~f~~g~~~VLVaT~-----------------------------------a~~~GiD~p~v~~VI~~~~p~s~~~y~Q 344 (507)
++++|..|-++++|||+ -.++|||+.+|..|++||+|.+..+|+|
T Consensus 310 ii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIH 389 (569)
T KOG0346|consen 310 IIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIH 389 (569)
T ss_pred HHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHH
Confidence 99999999999999998 1347999999999999999999999999
Q ss_pred HhcccCCCCCCceEEEEeccchHH---HHHHHHHh
Q 010563 345 ESGRAGRDQLPSKSLLYYGMDDRR---RMEFILSK 376 (507)
Q Consensus 345 ~~GRagR~g~~~~~i~~~~~~d~~---~~~~~~~~ 376 (507)
|+||++|.+++|.++.|+.+.+.. .++.++..
T Consensus 390 RvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 390 RVGRTARGNNKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred hccccccCCCCCceEEEecchHHhhhhHHHHHHhh
Confidence 999999999999999999999877 45555444
No 34
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-44 Score=352.15 Aligned_cols=336 Identities=21% Similarity=0.297 Sum_probs=262.9
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC----------------
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK---------------- 77 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g-~d~lv~apTG~GKTl~~~lp~l~~---------------- 77 (507)
-.|..+.++.+++.+|.+ .||+.|+++|..+|+++..| .|++..|.||||||++|-+|++.+
T Consensus 181 sAW~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred HHHhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 357778999999999998 79999999999999999999 699999999999999999999861
Q ss_pred ---CCeEEEecChHHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH
Q 010563 78 ---PGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150 (507)
Q Consensus 78 ---~~~~lvi~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l 150 (507)
....||++|||+|+.|..+.+.. -|+.+..+.++.......++... . .+| +++|||++..+
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~--p~I------VVATPGRlwel 327 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----R--PDI------VVATPGRLWEL 327 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----C--CCE------EEecchHHHHH
Confidence 23599999999999999998877 47888888888776665554443 3 334 45566655444
Q ss_pred Hh-----hhccCCccEEEEeccccccccCCCCHHHHHHHHHHH--HhCCCCCEEEEeecCChh-----------------
Q 010563 151 KK-----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR--NYLPDVPILALTATAAPK----------------- 206 (507)
Q Consensus 151 ~~-----~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~--~~~~~~~~i~lSAT~~~~----------------- 206 (507)
.. +.+...+.++|+|||++|.+-|| |...-.-|..+. ...+..|.+.||||++-.
T Consensus 328 i~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~ 406 (731)
T KOG0347|consen 328 IEEDNTHLGNFKKVKCLVLDEADRMVEKGH-FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDE 406 (731)
T ss_pred HHhhhhhhhhhhhceEEEEccHHHHhhhcc-HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhh
Confidence 22 33345689999999999999998 543333333332 122467899999998632
Q ss_pred ---hHHHHHHHhCCCCC-eEEeccCCCCceEEEEEeecchhhHHHHH----------------HHHHHhcCCccEEEEec
Q 010563 207 ---VQKDVMESLCLQNP-LVLKSSFNRPNLFYEVRYKDLLDDAYADL----------------CSVLKANGDTCAIVYCL 266 (507)
Q Consensus 207 ---~~~~i~~~l~~~~~-~~~~~~~~~~ni~~~v~~~~~~~~~~~~l----------------~~~l~~~~~~~~IVf~~ 266 (507)
....+++.+++..+ .++..... ......| ..+|... ++++|||||
T Consensus 407 ~~~kiq~Lmk~ig~~~kpkiiD~t~q--------------~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~N 471 (731)
T KOG0347|consen 407 LNAKIQHLMKKIGFRGKPKIIDLTPQ--------------SATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCN 471 (731)
T ss_pred hhHHHHHHHHHhCccCCCeeEecCcc--------------hhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEec
Confidence 22334445555433 33321111 1111111 1122223 467999999
Q ss_pred cchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHh
Q 010563 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (507)
Q Consensus 267 s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~ 346 (507)
+++.+.+|+-.|+..+++...+|+.|.+++|...+++|++...-|||||+++++|+|+|+|.+||||..|.+.+-|+||+
T Consensus 472 sId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRS 551 (731)
T KOG0347|consen 472 SIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRS 551 (731)
T ss_pred hHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 010563 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (507)
Q Consensus 347 GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~ 379 (507)
||+.|++..|.++++.+|.+...+..+.+....
T Consensus 552 GRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 552 GRTARANSEGVSVMLCGPQEVGPLKKLCKTLKK 584 (731)
T ss_pred cccccccCCCeEEEEeChHHhHHHHHHHHHHhh
Confidence 999999999999999999999888877665443
No 35
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-44 Score=353.79 Aligned_cols=340 Identities=20% Similarity=0.288 Sum_probs=268.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----------------CC
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------PG 79 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~----------------~~ 79 (507)
.|....+.+.+...++. -|+..++|+|+.+|+.+..|+|++++|+||+|||.+|++|++.. .+
T Consensus 75 ~f~~~~l~~~l~~ni~~-~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKR-SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcccc-ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 45566777888888877 59999999999999999999999999999999999999999841 36
Q ss_pred eEEEecChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH--hh
Q 010563 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KI 153 (507)
Q Consensus 80 ~~lvi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~--~~ 153 (507)
.++|++||++|+.|..++.+++ ++.......+..... ....+. ..++|+++||-.+ ..+. ..
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~---q~~~~~---~gcdIlvaTpGrL------~d~~e~g~ 221 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA---QLRFIK---RGCDILVATPGRL------KDLIERGK 221 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh---hhhhhc---cCccEEEecCchh------hhhhhcce
Confidence 8999999999999999999885 345555555533221 112222 3477876666544 3332 22
Q ss_pred hccCCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC--CCCEEEEeecCChhhHHHHHHHhCCCC--CeEEeccCC
Q 010563 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQN--PLVLKSSFN 228 (507)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~~~--~~~~~~~~~ 228 (507)
..+..++++|+|||+.+.+ +| |.|.++.+..-..+.| +.+.++||||.+......+...+.-.. -.+-+....
T Consensus 222 i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~ 299 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST 299 (482)
T ss_pred eehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccc
Confidence 3345578999999999999 78 8888888765555443 678999999999998884444432211 123344566
Q ss_pred CCceEEEEEeecchhhHHHHHHHHHHhcC----Cc-----cEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHH
Q 010563 229 RPNLFYEVRYKDLLDDAYADLCSVLKANG----DT-----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299 (507)
Q Consensus 229 ~~ni~~~v~~~~~~~~~~~~l~~~l~~~~----~~-----~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~ 299 (507)
..|+...+..... .++...|.+++.... .+ .++|||.|++.+..++..|...++++..+||.-++.+|.+
T Consensus 300 ~~ni~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 300 SENITQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred cccceeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH
Confidence 7788777766543 355666777765432 22 7999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHH
Q 010563 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (507)
Q Consensus 300 ~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~ 371 (507)
.++.|++|...|||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|..|.+..|++..+....+
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~ 450 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAK 450 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999966554443
No 36
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-43 Score=330.26 Aligned_cols=351 Identities=19% Similarity=0.245 Sum_probs=278.5
Q ss_pred cccccccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------C
Q 010563 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------P 78 (507)
Q Consensus 7 p~~~~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~~lp~l~~------~ 78 (507)
|.+++-+..+|+++.|.+++.+.+.. ++|..|..+|+.|++.++.. +++|.++..|+|||.||.+.+|.+ .
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~ 160 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVV 160 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccC
Confidence 66677788899999999999999998 89999999999999999976 789999999999999999999865 5
Q ss_pred CeEEEecChHHHHHHHHHHHHHcCCce----EEecCCCCHHHHHHHHHHhhcC-CCcccEEEECcccccChhhHHHHHhh
Q 010563 79 GIVLVVSPLIALMENQVIGLKEKGIAG----EFLSSTQTMQVKTKIYEDLDSG-KPSLRLLYVTPELTATPGFMSKLKKI 153 (507)
Q Consensus 79 ~~~lvi~P~~~L~~q~~~~l~~~gi~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~~tpe~~~t~~~~~~l~~~ 153 (507)
+.++.|+|+++|+.|..+.+.+.|-.. .+.-.+.. ...| .-..+|+++||..+.- +... .+.
T Consensus 161 PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk----------~~rG~~i~eqIviGTPGtv~D--lm~k-lk~ 227 (477)
T KOG0332|consen 161 PQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK----------AKRGNKLTEQIVIGTPGTVLD--LMLK-LKC 227 (477)
T ss_pred CCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc----------cccCCcchhheeeCCCccHHH--HHHH-HHh
Confidence 678999999999999999999877443 22211110 1111 1124455555543321 1111 134
Q ss_pred hccCCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEec-cCCCC
Q 010563 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRP 230 (507)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~ 230 (507)
.....+..+|+|||+.+.+ -| |+..-. .+....| +.+++++|||....+.....+.+.-.++..++. .....
T Consensus 228 id~~kikvfVlDEAD~Mi~tqG--~~D~S~---rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~ 302 (477)
T KOG0332|consen 228 IDLEKIKVFVLDEADVMIDTQG--FQDQSI---RIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALD 302 (477)
T ss_pred hChhhceEEEecchhhhhhccc--ccccch---hhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhcccc
Confidence 4556689999999999876 34 433323 3344445 899999999999999887777765555555544 34556
Q ss_pred ceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCce
Q 010563 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (507)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (507)
+++.........+++++.|.++.....-++.||||.|++++.+++..|.+.|..+..+||+|...+|..+.++|+.|..+
T Consensus 303 ~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k 382 (477)
T KOG0332|consen 303 NIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK 382 (477)
T ss_pred chhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce
Confidence 66555555556688999999988777778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccccccCCCccEEEEeCCCC------CHHHHHHHhcccCCCCCCceEEEEeccc-hHHHHHHHHHh
Q 010563 311 VVVATVAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSK 376 (507)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~------s~~~y~Q~~GRagR~g~~~~~i~~~~~~-d~~~~~~~~~~ 376 (507)
|||+|+++++|||++.|.+||+||+|- +.+.|+||+||+||+|+.|.++.+++.. +...++.|.+.
T Consensus 383 VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~ 455 (477)
T KOG0332|consen 383 VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKH 455 (477)
T ss_pred EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHH
Confidence 999999999999999999999999995 7899999999999999999999988754 45555555543
No 37
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.6e-41 Score=372.74 Aligned_cols=321 Identities=21% Similarity=0.209 Sum_probs=253.9
Q ss_pred CCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHh---cCCCeEEEecChHH
Q 010563 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (507)
Q Consensus 19 ~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g------~d~lv~apTG~GKTl~~~lp~l---~~~~~~lvi~P~~~ 89 (507)
+++....+...+.+.|||. ++|.|.+||+.++++ .|.++++|||+|||.+|++|++ ..+..++|++||++
T Consensus 433 ~~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~ 511 (926)
T TIGR00580 433 AFPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTL 511 (926)
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHH
Confidence 3555667778888889996 999999999999875 6999999999999999998876 45789999999999
Q ss_pred HHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEe
Q 010563 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (507)
Q Consensus 90 L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViD 165 (507)
|+.|+++.+++ +++++..+++..+..+...+...+..+. .+|+++||..+. +.....+++++|||
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~--~dIVIGTp~ll~---------~~v~f~~L~llVID 580 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK--IDILIGTHKLLQ---------KDVKFKDLGLLIID 580 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC--ceEEEchHHHhh---------CCCCcccCCEEEee
Confidence 99999998887 4677888888888888888888887765 778888885432 22334568999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc-CCCCceEEEEEeecchhh
Q 010563 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLDD 244 (507)
Q Consensus 166 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-~~~~ni~~~v~~~~~~~~ 244 (507)
|+|++ |... ...+....+++++++||||+.+.+.. ....++.++.++... ..+..+...+.... ...
T Consensus 581 Eahrf---gv~~------~~~L~~~~~~~~vL~~SATpiprtl~--~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~-~~~ 648 (926)
T TIGR00580 581 EEQRF---GVKQ------KEKLKELRTSVDVLTLSATPIPRTLH--MSMSGIRDLSIIATPPEDRLPVRTFVMEYD-PEL 648 (926)
T ss_pred ccccc---chhH------HHHHHhcCCCCCEEEEecCCCHHHHH--HHHhcCCCcEEEecCCCCccceEEEEEecC-HHH
Confidence 99994 4322 23344445688999999999887765 344566666655443 34444443333222 111
Q ss_pred HHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC--CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccc
Q 010563 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (507)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (507)
....+...+. .+++++|||+++++++.+++.|++. ++++..+||+|++++|+.++++|.+|+++|||||+++++||
T Consensus 649 i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GI 726 (926)
T TIGR00580 649 VREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGI 726 (926)
T ss_pred HHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccc
Confidence 2233333333 3468999999999999999999985 78899999999999999999999999999999999999999
Q ss_pred cCCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 323 DRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 323 D~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
|+|++++||+++.|. +..+|+|++||+||.|+.|.|++++...
T Consensus 727 DIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 727 DIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999875 6889999999999999999999998643
No 38
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.4e-41 Score=377.08 Aligned_cols=319 Identities=23% Similarity=0.299 Sum_probs=232.4
Q ss_pred hHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------------CCCeEEEecChHH
Q 010563 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPGIVLVVSPLIA 89 (507)
Q Consensus 22 l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------------~~~~~lvi~P~~~ 89 (507)
+++.+.+.+++ +|..|+|+|.++++.+++|+|++++||||+|||++|++|++. ....+|+|+|+++
T Consensus 18 l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 45677777776 677899999999999999999999999999999999999873 1246999999999
Q ss_pred HHHHHHHHHHH---------------c-CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECccccc----ChhhHHH
Q 010563 90 LMENQVIGLKE---------------K-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA----TPGFMSK 149 (507)
Q Consensus 90 L~~q~~~~l~~---------------~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~----t~~~~~~ 149 (507)
|+.|+.+.+.. + ++.+...++..+...+..... ...+|+++|||.+. .+.+..
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~------~~p~IlVtTPE~L~~ll~~~~~~~- 168 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK------KPPHILITTPESLAILLNSPKFRE- 168 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh------CCCCEEEecHHHHHHHhcChhHHH-
Confidence 99999876542 1 456677777776665543322 13689999999663 121111
Q ss_pred HHhhhccCCccEEEEecccccccc--CCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCC------CCC
Q 010563 150 LKKIHSRGLLNLVAIDEAHCISSW--GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL------QNP 220 (507)
Q Consensus 150 l~~~~~~~~l~~iViDEaH~i~~~--g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~------~~~ 220 (507)
....+++|||||+|.+.+. |..+...+.+| .... ++.+++++|||+++. ..+..++.. ..+
T Consensus 169 -----~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL---~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~ 238 (876)
T PRK13767 169 -----KLRTVKWVIVDEIHSLAENKRGVHLSLSLERL---EELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRD 238 (876)
T ss_pred -----HHhcCCEEEEechhhhccCccHHHHHHHHHHH---HHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCc
Confidence 2345899999999999753 33333333444 3333 467899999999863 344555543 122
Q ss_pred eEEe-ccCCCCceEEEEEe----------ecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC------CC
Q 010563 221 LVLK-SSFNRPNLFYEVRY----------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------GI 283 (507)
Q Consensus 221 ~~~~-~~~~~~ni~~~v~~----------~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~------g~ 283 (507)
..+. ..+.+ .+...+.. .......+..+.+.++. .+++||||+|++.|+.++..|++. +.
T Consensus 239 ~~iv~~~~~k-~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~ 315 (876)
T PRK13767 239 CEIVDARFVK-PFDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDED 315 (876)
T ss_pred eEEEccCCCc-cceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhcccc
Confidence 2222 22222 11111110 00112234445555443 457999999999999999999873 46
Q ss_pred ceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCC-CCCceEEEEe
Q 010563 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYY 362 (507)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~-g~~~~~i~~~ 362 (507)
.+..+||+|+.++|..++++|++|+++|||||+++++|||+|++++||+++.|.|+..|+||+||+||. |..+.+.++.
T Consensus 316 ~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 316 NIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred ceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999986 4444555444
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.5e-42 Score=375.65 Aligned_cols=330 Identities=22% Similarity=0.309 Sum_probs=245.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHH
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~-i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~ 91 (507)
+++.+++++.+.+.+++ .|+.+|+|+|.++++. +..|+|++++||||+|||++|.+|++. .++++|||+|+++|+
T Consensus 2 ~~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa 80 (737)
T PRK02362 2 KIAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALA 80 (737)
T ss_pred ChhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHH
Confidence 36678899999999998 6999999999999998 778999999999999999999999765 578999999999999
Q ss_pred HHHHHHHHHc---CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh-hhccCCccEEEEecc
Q 010563 92 ENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEA 167 (507)
Q Consensus 92 ~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~-~~~~~~l~~iViDEa 167 (507)
.|+.+.++.+ |+++..+.+....... .+ ...+|+++|||.+..- +.+ ......+++|||||+
T Consensus 81 ~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l----~~~~IiV~Tpek~~~l-----lr~~~~~l~~v~lvViDE~ 146 (737)
T PRK02362 81 SEKFEEFERFEELGVRVGISTGDYDSRDE-----WL----GDNDIIVATSEKVDSL-----LRNGAPWLDDITCVVVDEV 146 (737)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc----CCCCEEEECHHHHHHH-----HhcChhhhhhcCEEEEECc
Confidence 9999999886 7887777665432210 01 1367888888865321 110 112345899999999
Q ss_pred ccccccCCCCHHHHHH-HHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCC------CeEEecc-CCCCceEEEEE--
Q 010563 168 HCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN------PLVLKSS-FNRPNLFYEVR-- 237 (507)
Q Consensus 168 H~i~~~g~~fr~~~~~-l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~------~~~~~~~-~~~~ni~~~v~-- 237 (507)
|.+.+.+ +.+.+.. +..++...++.+++++|||++.. .++..+++... |..+... .....+.+...
T Consensus 147 H~l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~ 222 (737)
T PRK02362 147 HLIDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQR 222 (737)
T ss_pred cccCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccc
Confidence 9998743 5566655 34555566789999999999764 45677775421 1100000 00000000000
Q ss_pred --eecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCC---------------------------------
Q 010563 238 --YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG--------------------------------- 282 (507)
Q Consensus 238 --~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g--------------------------------- 282 (507)
........+..+.+.+. .++++||||+|++.|+.++..|.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 300 (737)
T PRK02362 223 EVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLAD 300 (737)
T ss_pred cCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHH
Confidence 00001223334444443 45689999999999999998886431
Q ss_pred ---CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEE----eC-----CCCCHHHHHHHhcccC
Q 010563 283 ---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-----IPKSMEAFYQESGRAG 350 (507)
Q Consensus 283 ---~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----~~-----~p~s~~~y~Q~~GRag 350 (507)
..++++||||++.+|..+++.|++|.++|||||+++++|||+|.+++||+ |+ .|.+..+|.||+||||
T Consensus 301 ~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAG 380 (737)
T PRK02362 301 CVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAG 380 (737)
T ss_pred HHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCC
Confidence 35789999999999999999999999999999999999999999999997 65 6889999999999999
Q ss_pred CCCCC--ceEEEEeccch
Q 010563 351 RDQLP--SKSLLYYGMDD 366 (507)
Q Consensus 351 R~g~~--~~~i~~~~~~d 366 (507)
|.|.. |.++++....+
T Consensus 381 R~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 381 RPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCCCceEEEEecCch
Confidence 99975 88999987653
No 40
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1e-41 Score=389.98 Aligned_cols=333 Identities=16% Similarity=0.217 Sum_probs=261.3
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHH
Q 010563 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (507)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~ 99 (507)
-+++.+.+++.+|| +|++.|.++++.++.|+|++++||||+|||++++++++. .+.+++||+||++|+.|+++.++
T Consensus 65 ~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 65 VEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred HHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHH
Confidence 35677788888999 599999999999999999999999999999988877664 35589999999999999999998
Q ss_pred Hc------CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc
Q 010563 100 EK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (507)
Q Consensus 100 ~~------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (507)
.+ ++.+..++++.+..........+..+. .+|+++||+.+... +..+ . ...++++||||||++++|
T Consensus 144 ~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~--~dILV~TPgrL~~~--~~~l---~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 144 SFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD--FDILVTTAQFLARN--FPEM---K-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECCchhHHh--HHHH---h-hCCCCEEEEECceecccc
Confidence 84 456778888888887777777776654 78999999866431 1111 1 155899999999999999
Q ss_pred CC---------CCHHHHHH----H-------------------HHHHHhCCCCC--EEEEeecCChhhHHHHHHHhCCCC
Q 010563 174 GH---------DFRPSYRK----L-------------------SSLRNYLPDVP--ILALTATAAPKVQKDVMESLCLQN 219 (507)
Q Consensus 174 g~---------~fr~~~~~----l-------------------~~l~~~~~~~~--~i~lSAT~~~~~~~~i~~~l~~~~ 219 (507)
|+ +|++++.. + ......+|+.+ ++.+|||.++. .++...+ .+
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~--~~ 291 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY--RE 291 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh--hc
Confidence 88 79999864 2 11122345443 46688888764 2233333 45
Q ss_pred CeEEeccCCCCceEEEE---EeecchhhHHHHHHHHHHhcCCccEEEEeccchh---HHHHHHHHHhCCCceeEecCCCC
Q 010563 220 PLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLN 293 (507)
Q Consensus 220 ~~~~~~~~~~~ni~~~v---~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~---~~~l~~~L~~~g~~~~~~h~~l~ 293 (507)
+..+..+..++++...+ .... ......+.++++.. +..+||||+|++. |+++++.|.+.|+++..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~--~~~k~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPE--KIIKEHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECC--HHHHHHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 55566666665543322 2122 12225677777766 3579999999886 489999999999999999995
Q ss_pred HHHHHHHHHHHhcCCceEEEEeC----cccccccCCC-ccEEEEeCCCC---CHHHHHHHh-------------cccCCC
Q 010563 294 DKARSSVLDDWISSRKQVVVATV----AFGMGIDRKD-VRLVCHFNIPK---SMEAFYQES-------------GRAGRD 352 (507)
Q Consensus 294 ~~~R~~~~~~f~~g~~~VLVaT~----a~~~GiD~p~-v~~VI~~~~p~---s~~~y~Q~~-------------GRagR~ 352 (507)
|...+++|++|+++|||||+ .++||||+|+ |++|||||+|+ |++.|+|.. |||||+
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 88999999999999999995 7789999999 99999999999 999999988 999999
Q ss_pred CCCceEEEEeccchHHHHHHHHHh
Q 010563 353 QLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 353 g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
|.++.+++.+...+...++.+++.
T Consensus 444 g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 444 GIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CCcchhHHHhHHHHHHHHHHHhcc
Confidence 999999988888888888877664
No 41
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.2e-40 Score=361.26 Aligned_cols=316 Identities=21% Similarity=0.266 Sum_probs=247.1
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHH
Q 010563 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN 93 (507)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g------~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q 93 (507)
...+.+.+...++|. |++.|++|++.+.++ .+.++++|||||||++|++|++. .+..++|++||++|+.|
T Consensus 247 ~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q 325 (681)
T PRK10917 247 DGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQ 325 (681)
T ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHH
Confidence 356666677779996 999999999999876 37999999999999999998863 56789999999999999
Q ss_pred HHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc
Q 010563 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (507)
Q Consensus 94 ~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (507)
+.+.++++ |+++..++++.....+......+..+. .+++++||..+... ....+++++||||+|+
T Consensus 326 ~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll~~~---------v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 326 HYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE--ADIVIGTHALIQDD---------VEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC--CCEEEchHHHhccc---------chhcccceEEEechhh
Confidence 99998773 689999999999988888888888775 78888888765321 1234589999999998
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec-cCCCCceEEEEEeecchhhHHHH
Q 010563 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYAD 248 (507)
Q Consensus 170 i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~ni~~~v~~~~~~~~~~~~ 248 (507)
+ |...|. .+.....+.++++||||+.+.... ....+..+...+.. +..+..+...+.........++.
T Consensus 395 f---g~~qr~------~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~ 463 (681)
T PRK10917 395 F---GVEQRL------ALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYER 463 (681)
T ss_pred h---hHHHHH------HHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHH
Confidence 5 333332 233444468899999999887654 22333333333332 33344555444443333334444
Q ss_pred HHHHHHhcCCccEEEEeccch--------hHHHHHHHHHhC--CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc
Q 010563 249 LCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (507)
Q Consensus 249 l~~~l~~~~~~~~IVf~~s~~--------~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (507)
+...+. .+.+++|||++.+ .++.+++.|.+. ++++..+||+|++++|+.++++|++|+++|||||+++
T Consensus 464 i~~~~~--~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 541 (681)
T PRK10917 464 IREEIA--KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVI 541 (681)
T ss_pred HHHHHH--cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcce
Confidence 444443 3568999999654 456778888775 5789999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCceEEEEec
Q 010563 319 GMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYG 363 (507)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~i~~~~ 363 (507)
++|||+|++++||+++.|. +.+.|.|++||+||.|..|.|++++.
T Consensus 542 e~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999997 68899999999999999999999995
No 42
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.1e-43 Score=332.28 Aligned_cols=331 Identities=21% Similarity=0.356 Sum_probs=252.4
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc--------------CCCe
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------------KPGI 80 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~--------------~~~~ 80 (507)
..|.++..++.+++.|++ -|+.+|+|+|.+.++.+++|+|++..|-||||||++|.+|.+. .++.
T Consensus 170 ksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~ 248 (610)
T KOG0341|consen 170 KSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPY 248 (610)
T ss_pred hhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCe
Confidence 346666778889999999 5999999999999999999999999999999999999999863 2568
Q ss_pred EEEecChHHHHHHHHHHHHH-------cCC---ceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH
Q 010563 81 VLVVSPLIALMENQVIGLKE-------KGI---AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150 (507)
Q Consensus 81 ~lvi~P~~~L~~q~~~~l~~-------~gi---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l 150 (507)
.|||||+++|+.|..+-+.. .|. ++....++.+..+.. ..+..| +.+++.| |+++..+
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql---~~v~~G---vHivVAT------PGRL~Dm 316 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQL---DVVRRG---VHIVVAT------PGRLMDM 316 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHH---HHHhcC---eeEEEcC------cchHHHH
Confidence 99999999999887665443 332 223333344443332 223333 5565555 4544433
Q ss_pred --HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc--
Q 010563 151 --KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-- 226 (507)
Q Consensus 151 --~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~-- 226 (507)
.+..++.-.+++++|||+++.++| |..+++.+-.+.. ..++.++||||.+...+... .-.+-.|+.+...
T Consensus 317 L~KK~~sLd~CRyL~lDEADRmiDmG--FEddir~iF~~FK--~QRQTLLFSATMP~KIQ~FA--kSALVKPvtvNVGRA 390 (610)
T KOG0341|consen 317 LAKKIMSLDACRYLTLDEADRMIDMG--FEDDIRTIFSFFK--GQRQTLLFSATMPKKIQNFA--KSALVKPVTVNVGRA 390 (610)
T ss_pred HHHhhccHHHHHHhhhhhHHHHhhcc--chhhHHHHHHHHh--hhhheeeeeccccHHHHHHH--HhhcccceEEecccc
Confidence 233334446789999999999999 7877766654443 36889999999999887633 3334566555332
Q ss_pred -CCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHh
Q 010563 227 -FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (507)
Q Consensus 227 -~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 305 (507)
...-|+...+.+.. .+.++-.|.+-|++. ..+++|||..+.+++.+.++|--.|+.++.+|||-++++|....+.|+
T Consensus 391 GAAsldViQevEyVk-qEaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr 468 (610)
T KOG0341|consen 391 GAASLDVIQEVEYVK-QEAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFR 468 (610)
T ss_pred cccchhHHHHHHHHH-hhhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHh
Confidence 11112222221111 134555566666554 357999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 010563 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (507)
Q Consensus 306 ~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d 366 (507)
.|+-+|||||++++.|+|+|++.+|||||+|..+++|+||+||+||.|+.|.+.+|.+...
T Consensus 469 ~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 469 AGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred cCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999999998653
No 43
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-41 Score=326.21 Aligned_cols=347 Identities=19% Similarity=0.272 Sum_probs=286.7
Q ss_pred ccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCe
Q 010563 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGI 80 (507)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~-----------~~~ 80 (507)
.+...|+.++..+.|..++++. -|.+++|+|.++++..+.|+|++.+|-||||||.+|++|++.. ++.
T Consensus 220 rpvtsfeh~gfDkqLm~airk~-Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi 298 (731)
T KOG0339|consen 220 RPVTSFEHFGFDKQLMTAIRKS-EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPI 298 (731)
T ss_pred CCcchhhhcCchHHHHHHHhhh-hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCe
Confidence 3455677788889999999884 8999999999999999999999999999999999999999742 568
Q ss_pred EEEecChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH--Hhhh
Q 010563 81 VLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIH 154 (507)
Q Consensus 81 ~lvi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l--~~~~ 154 (507)
.|+++||++|+.|.....++| |++...++.+.+.-+....+ ..+ ..++++||+ ++..+ .+..
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~L---k~g---~EivVaTPg------Rlid~VkmKat 366 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKEL---KEG---AEIVVATPG------RLIDMVKMKAT 366 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhh---hcC---CeEEEechH------HHHHHHHhhcc
Confidence 899999999999999888775 78999999888876654332 222 556555555 43333 2344
Q ss_pred ccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEE-eccCC--CCc
Q 010563 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFN--RPN 231 (507)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~--~~n 231 (507)
+..++.++|+|||++|.+.| |.+..+.|..-. .|+.|.++||||....+.......|. +|+.+ ..+.. ...
T Consensus 367 n~~rvS~LV~DEadrmfdmG--fe~qVrSI~~hi--rpdrQtllFsaTf~~kIe~lard~L~--dpVrvVqg~vgean~d 440 (731)
T KOG0339|consen 367 NLSRVSYLVLDEADRMFDMG--FEPQVRSIKQHI--RPDRQTLLFSATFKKKIEKLARDILS--DPVRVVQGEVGEANED 440 (731)
T ss_pred cceeeeEEEEechhhhhccc--cHHHHHHHHhhc--CCcceEEEeeccchHHHHHHHHHHhc--CCeeEEEeehhccccc
Confidence 55668999999999999999 888887775443 47999999999999988876655553 44433 23333 344
Q ss_pred eEEEEEeecchhhHHHHHHHHHHh-cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCce
Q 010563 232 LFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (507)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (507)
|...|......+.++..|..-|-. ...+++|||+.-+..+++++..|+-.|+++..+||+|.+.+|.+++.+|+.+..+
T Consensus 441 ITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~ 520 (731)
T KOG0339|consen 441 ITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP 520 (731)
T ss_pred hhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc
Confidence 566666666667788877766544 4457899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 010563 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~ 377 (507)
|||||++..+|+|+|+++.||+||+-.+++.|.||+||+||.|..|.+++|++..|......+++..
T Consensus 521 VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnL 587 (731)
T KOG0339|consen 521 VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNL 587 (731)
T ss_pred eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998776666644
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.1e-40 Score=354.57 Aligned_cols=323 Identities=25% Similarity=0.313 Sum_probs=260.0
Q ss_pred ChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----C-------CCeEEEecChHH
Q 010563 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----K-------PGIVLVVSPLIA 89 (507)
Q Consensus 21 ~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~-------~~~~lvi~P~~~ 89 (507)
.+++.+.+++++. |.+|||.|.+||+.+.+|+++++.||||+|||+++.+|++. . +-.+|+|+|++|
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 4578899999985 89999999999999999999999999999999999999873 2 125899999999
Q ss_pred HHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccc----cChhhHHHHHhhhccCCccE
Q 010563 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNL 161 (507)
Q Consensus 90 L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~----~t~~~~~~l~~~~~~~~l~~ 161 (507)
|.+|...+|.. +|+++...++.++..++.... ....+|+++|||.+ ..+.+...+ .++.+
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~------~~PPdILiTTPEsL~lll~~~~~r~~l------~~vr~ 152 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKML------KNPPHILITTPESLAILLNSPKFRELL------RDVRY 152 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhcc------CCCCcEEEeChhHHHHHhcCHHHHHHh------cCCcE
Confidence 99999998765 789998889888887775432 23488999999943 344444433 34899
Q ss_pred EEEeccccccc--cCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCC-CeEEeccCCCCceEEEEEe
Q 010563 162 VAIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-PLVLKSSFNRPNLFYEVRY 238 (507)
Q Consensus 162 iViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~~~~~ni~~~v~~ 238 (507)
+||||.|.+.. .|... +..|.++....++.+.|++|||..+. .++.++|.-.. +..+.......+..+.+..
T Consensus 153 VIVDEiHel~~sKRG~~L---sl~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~ 227 (814)
T COG1201 153 VIVDEIHALAESKRGVQL---ALSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKKLEIKVIS 227 (814)
T ss_pred EEeehhhhhhccccchhh---hhhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCCcceEEEEe
Confidence 99999999954 55443 24556666666688999999999865 56678887765 4434333333333333332
Q ss_pred ec--------chhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCC-CceeEecCCCCHHHHHHHHHHHhcCCc
Q 010563 239 KD--------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLNDKARSSVLDDWISSRK 309 (507)
Q Consensus 239 ~~--------~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (507)
.. .....+..+.++++++. .+|||+|||..+|.++..|++.+ ..+..+||+++.+.|..+.++|++|+.
T Consensus 228 p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~l 305 (814)
T COG1201 228 PVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL 305 (814)
T ss_pred cCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCc
Confidence 11 12346777888888765 79999999999999999999986 889999999999999999999999999
Q ss_pred eEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCC-CCCCceEEEEecc
Q 010563 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSKSLLYYGM 364 (507)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR-~g~~~~~i~~~~~ 364 (507)
+++|||+.++.|||+.+|+.|||++.|+++..++||+||+|+ -|..+.++++-..
T Consensus 306 ravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 306 KAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred eEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999999999995 5666777777554
No 45
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=6.9e-40 Score=353.14 Aligned_cols=313 Identities=19% Similarity=0.246 Sum_probs=237.2
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHH
Q 010563 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQV 95 (507)
Q Consensus 25 ~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g------~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~ 95 (507)
.+...+.+.++| +|++.|++|++.++.+ .+.++++|||+|||++|++|++. .+..++|++||++|+.|+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHY 301 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHH
Confidence 444444445899 5999999999999876 25799999999999999988764 5778999999999999999
Q ss_pred HHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 96 IGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 96 ~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
+.++++ |+++..++++.....+......+..+. .+++++||..+.. .....+++++||||+|++
T Consensus 302 ~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~--~~IiVgT~~ll~~---------~~~~~~l~lvVIDEaH~f- 369 (630)
T TIGR00643 302 NSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ--IHLVVGTHALIQE---------KVEFKRLALVIIDEQHRF- 369 (630)
T ss_pred HHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC--CCEEEecHHHHhc---------cccccccceEEEechhhc-
Confidence 988773 789999999998888888888887775 7888888875532 123456899999999984
Q ss_pred ccCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhhHHHHHHHhCCCCCeEE-eccCCCCceEEEEEeecchhhHHH
Q 010563 172 SWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPNLFYEVRYKDLLDDAYA 247 (507)
Q Consensus 172 ~~g~~fr~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~~~ni~~~v~~~~~~~~~~~ 247 (507)
|...|. .+....+ +.++++||||+.+..... ...+..+...+ ..+..+..+...+......+..+.
T Consensus 370 --g~~qr~------~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~ 439 (630)
T TIGR00643 370 --GVEQRK------KLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYE 439 (630)
T ss_pred --cHHHHH------HHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCcchHHHHHH
Confidence 433332 2333333 678999999998865442 22222222222 222334444444433322222333
Q ss_pred HHHHHHHhcCCccEEEEeccc--------hhHHHHHHHHHhC--CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc
Q 010563 248 DLCSVLKANGDTCAIVYCLER--------TTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (507)
Q Consensus 248 ~l~~~l~~~~~~~~IVf~~s~--------~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (507)
.+.+.+. .+.+++|||+.. ..++.+++.|.+. ++.+..+||+|++++|..++++|++|+.+|||||++
T Consensus 440 ~i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 517 (630)
T TIGR00643 440 FIEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTV 517 (630)
T ss_pred HHHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECce
Confidence 3333322 346799999876 4566778888764 778999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCceEEEEe
Q 010563 318 FGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYY 362 (507)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~i~~~ 362 (507)
+++|||+|++++||+++.|. +...|.|++||+||.|++|.|++++
T Consensus 518 ie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 518 IEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred eecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999999999999999987 7899999999999999999999999
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.4e-39 Score=364.70 Aligned_cols=330 Identities=21% Similarity=0.212 Sum_probs=250.8
Q ss_pred CChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHh---cCCCeEEEecChHHH
Q 010563 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIAL 90 (507)
Q Consensus 20 ~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g------~d~lv~apTG~GKTl~~~lp~l---~~~~~~lvi~P~~~L 90 (507)
++.+..+.......|+| .+++.|.+||+.++.+ .|+++++|||+|||.+|+.++. ..+..++|++||++|
T Consensus 583 ~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 44455666767777999 5999999999999987 7999999999999999887764 457899999999999
Q ss_pred HHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEec
Q 010563 91 MENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDE 166 (507)
Q Consensus 91 ~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDE 166 (507)
+.|+++.+++ +++.+..+++..+..+...+...+..+. .+|+++||+.+.. ......++++||||
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~--~dIVVgTp~lL~~---------~v~~~~L~lLVIDE 730 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK--IDILIGTHKLLQS---------DVKWKDLGLLIVDE 730 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC--CCEEEECHHHHhC---------CCCHhhCCEEEEec
Confidence 9999999886 3467778888888888877777776654 7899999865421 12234589999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC-CCceEEEEEeecchhhH
Q 010563 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDLLDDA 245 (507)
Q Consensus 167 aH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~ni~~~v~~~~~~~~~ 245 (507)
+|++ |.. ....+....+++++++||||+.+.+... ...++.++.++..... +..+...+...... ..
T Consensus 731 ahrf---G~~------~~e~lk~l~~~~qvLl~SATpiprtl~l--~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~-~~ 798 (1147)
T PRK10689 731 EHRF---GVR------HKERIKAMRADVDILTLTATPIPRTLNM--AMSGMRDLSIIATPPARRLAVKTFVREYDSL-VV 798 (1147)
T ss_pred hhhc---chh------HHHHHHhcCCCCcEEEEcCCCCHHHHHH--HHhhCCCcEEEecCCCCCCCceEEEEecCcH-HH
Confidence 9995 422 2233444456899999999999887663 3345667766654332 33333222222211 11
Q ss_pred HHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC--CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccccccc
Q 010563 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (507)
Q Consensus 246 ~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD 323 (507)
...+...+. .+++++|||++++.++.+++.|++. +.++..+||+|++++|.+++.+|++|+++|||||+++++|||
T Consensus 799 k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGID 876 (1147)
T PRK10689 799 REAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 (1147)
T ss_pred HHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccc
Confidence 222222222 2467999999999999999999987 788999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeCCC-CCHHHHHHHhcccCCCCCCceEEEEeccc------hHHHHHHHHH
Q 010563 324 RKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKSLLYYGMD------DRRRMEFILS 375 (507)
Q Consensus 324 ~p~v~~VI~~~~p-~s~~~y~Q~~GRagR~g~~~~~i~~~~~~------d~~~~~~~~~ 375 (507)
+|++++||..+.+ .++..|+|++||+||.|+.|.|++++... ..++++.+.+
T Consensus 877 IP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~ 935 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 (1147)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHH
Confidence 9999999955442 35678999999999999999999998543 3455554444
No 47
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-41 Score=326.46 Aligned_cols=337 Identities=22% Similarity=0.296 Sum_probs=246.1
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHc---------CCCEEEEcCCCchHHHHHHHHHhcC-------CCeEEEecChHHHH
Q 010563 28 KLLRWHFGHAQFRDKQLDAIQAVLS---------GRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSPLIALM 91 (507)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~i~~---------g~d~lv~apTG~GKTl~~~lp~l~~-------~~~~lvi~P~~~L~ 91 (507)
..+.+ ++++.+.|.|..++++++. ++|+.|.||||||||++|.+|+++. .-++|||+|+++|+
T Consensus 150 q~l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~ 228 (620)
T KOG0350|consen 150 QLLVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELA 228 (620)
T ss_pred HHHHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHH
Confidence 34776 6999999999999999862 5799999999999999999999752 24799999999999
Q ss_pred HHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCC--CcccEEEECcccccChhhHHHH--HhhhccCCccEEE
Q 010563 92 ENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGK--PSLRLLYVTPELTATPGFMSKL--KKIHSRGLLNLVA 163 (507)
Q Consensus 92 ~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~il~~tpe~~~t~~~~~~l--~~~~~~~~l~~iV 163 (507)
.|.++.+..+ |+.+..+.+..+...... .+.... ..++|+++||..+.- .+ .+...+..++++|
T Consensus 229 ~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~---qL~~~~~~~~~DIlVaTPGRLVD-----Hl~~~k~f~Lk~LrfLV 300 (620)
T KOG0350|consen 229 LQVYDTFKRLNSGTGLAVCSLSGQNSLEDEAR---QLASDPPECRIDILVATPGRLVD-----HLNNTKSFDLKHLRFLV 300 (620)
T ss_pred HHHHHHHHHhccCCceEEEecccccchHHHHH---HHhcCCCccccceEEcCchHHHH-----hccCCCCcchhhceEEE
Confidence 9999999885 455444444433322222 222221 246777777664421 12 1233455689999
Q ss_pred EeccccccccCCCCHHHH----------------------------HHHHHHHHh----CCCCCEEEEeecCChhhHHHH
Q 010563 164 IDEAHCISSWGHDFRPSY----------------------------RKLSSLRNY----LPDVPILALTATAAPKVQKDV 211 (507)
Q Consensus 164 iDEaH~i~~~g~~fr~~~----------------------------~~l~~l~~~----~~~~~~i~lSAT~~~~~~~~i 211 (507)
|||||++.+-. |.... ..+..+... +|....+.+|||++....+
T Consensus 301 IDEADRll~qs--fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~K-- 376 (620)
T KOG0350|consen 301 IDEADRLLDQS--FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSK-- 376 (620)
T ss_pred echHHHHHHHH--HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHH--
Confidence 99999997511 11110 111122222 2233468888988876544
Q ss_pred HHHhCCCCCeEEeccC------CCCc-e-EEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHH----
Q 010563 212 MESLCLQNPLVLKSSF------NRPN-L-FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS---- 279 (507)
Q Consensus 212 ~~~l~~~~~~~~~~~~------~~~n-i-~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~---- 279 (507)
...+.+..|..+.... ..|. + .+.+... ...+.-.+..+++.....++|+|+++.+.+.+++..|+
T Consensus 377 l~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~--~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~ 454 (620)
T KOG0350|consen 377 LKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTE--PKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC 454 (620)
T ss_pred HhhhhcCCCceEEeecccceeeecChhhhhceeecc--cccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc
Confidence 5556666775443321 1111 1 1111111 12334456677777778899999999999999999987
Q ss_pred hCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEE
Q 010563 280 AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (507)
Q Consensus 280 ~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i 359 (507)
+...++..|.|+++.+.|...+++|..|+++|||||+++++|||+.+|+.||+||+|.+...|+||+||++|+|+.|.|+
T Consensus 455 ~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~ 534 (620)
T KOG0350|consen 455 SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAI 534 (620)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEE
Confidence 33567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchHHHHHHHHHhccc
Q 010563 360 LYYGMDDRRRMEFILSKNQS 379 (507)
Q Consensus 360 ~~~~~~d~~~~~~~~~~~~~ 379 (507)
.+....+...+..+++....
T Consensus 535 tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 535 TLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred EeeccccchHHHHHHHHhcc
Confidence 99999999999999987654
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5.9e-39 Score=351.92 Aligned_cols=332 Identities=22% Similarity=0.285 Sum_probs=240.0
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHH
Q 010563 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (507)
Q Consensus 17 ~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~-i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~ 91 (507)
++++++++.+.+.|++ .|+.+|+|+|.++++. ++.|+|+++.+|||+|||++|.+|++. .++++|+|+|+++|+
T Consensus 3 ~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 3 VDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred HHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 4567789999999999 7999999999999986 789999999999999999999999863 467999999999999
Q ss_pred HHHHHHHHH---cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 010563 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (507)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (507)
.|+++.++. +|+++..+++....... . + ...+|+++|||.+.. +.. ........+++|||||+|
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~---~----~~~~IiV~Tpe~~~~--ll~--~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDSTDE--W---L----GKYDIIIATAEKFDS--LLR--HGSSWIKDVKLVVADEIH 148 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCchh--h---h----ccCCEEEEcHHHHHH--HHh--CCchhhhcCCEEEEcCcC
Confidence 999988875 47888777766543211 1 1 136788899886532 110 001123458999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCc-e----EEE--EEeec
Q 010563 169 CISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN-L----FYE--VRYKD 240 (507)
Q Consensus 169 ~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~n-i----~~~--v~~~~ 240 (507)
.+.+++ +.+.+.. +.... ++.+++++|||++.. .++..+++... +.. ..+|. + .+. +...+
T Consensus 149 ~l~~~~--rg~~le~---il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~---~~~-~~rpv~l~~~~~~~~~~~~~~ 217 (720)
T PRK00254 149 LIGSYD--RGATLEM---ILTHMLGRAQILGLSATVGNA--EELAEWLNAEL---VVS-DWRPVKLRKGVFYQGFLFWED 217 (720)
T ss_pred ccCCcc--chHHHHH---HHHhcCcCCcEEEEEccCCCH--HHHHHHhCCcc---ccC-CCCCCcceeeEecCCeeeccC
Confidence 998765 3344433 33333 478999999999763 56677776431 111 11221 1 110 00001
Q ss_pred c-----hhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC---------------------------------C
Q 010563 241 L-----LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------------------G 282 (507)
Q Consensus 241 ~-----~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~---------------------------------g 282 (507)
. .......+.+.++. ++++||||+|++.|+.++..|.+. .
T Consensus 218 ~~~~~~~~~~~~~~~~~i~~--~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 295 (720)
T PRK00254 218 GKIERFPNSWESLVYDAVKK--GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALR 295 (720)
T ss_pred cchhcchHHHHHHHHHHHHh--CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHh
Confidence 0 11122334444443 468999999999999888766421 2
Q ss_pred CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEE-------eCCCC-CHHHHHHHhcccCCCC-
Q 010563 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------FNIPK-SMEAFYQESGRAGRDQ- 353 (507)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~-------~~~p~-s~~~y~Q~~GRagR~g- 353 (507)
..+.+|||+|++++|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|. +..+|.||+|||||.|
T Consensus 296 ~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 296 GGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred hCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 25889999999999999999999999999999999999999999999994 45443 6789999999999976
Q ss_pred -CCceEEEEeccchH-HHHHHHHH
Q 010563 354 -LPSKSLLYYGMDDR-RRMEFILS 375 (507)
Q Consensus 354 -~~~~~i~~~~~~d~-~~~~~~~~ 375 (507)
..|.++++....+. ..++.++.
T Consensus 376 d~~G~~ii~~~~~~~~~~~~~~~~ 399 (720)
T PRK00254 376 DEVGEAIIVATTEEPSKLMERYIF 399 (720)
T ss_pred CCCceEEEEecCcchHHHHHHHHh
Confidence 56889999876552 33444443
No 49
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-40 Score=346.44 Aligned_cols=346 Identities=21% Similarity=0.337 Sum_probs=277.8
Q ss_pred ccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----------CCCe
Q 010563 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGI 80 (507)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~-----------~~~~ 80 (507)
.+...|...+++..+...+++ +||..++|+|.+|||+|+.|+|+|.+|-||+|||++|++|++. .++.
T Consensus 362 kpv~sW~q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 362 KPVTSWTQCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred cccchHhhCCchHHHHHHHHH-hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 345678889999999999966 8999999999999999999999999999999999999999984 2678
Q ss_pred EEEecChHHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH--Hhh-
Q 010563 81 VLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKI- 153 (507)
Q Consensus 81 ~lvi~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l--~~~- 153 (507)
+||++||++|+.|..+.++. .|+.+....++...... ...+..+ ..|+++||..+ -.+ .+.
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~q---iaelkRg---~eIvV~tpGRm------iD~l~~n~g 508 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQ---IAELKRG---AEIVVCTPGRM------IDILCANSG 508 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHH---HHHHhcC---CceEEeccchh------hhhHhhcCC
Confidence 99999999999998888766 47777777766654433 3444554 55666666532 222 222
Q ss_pred --hccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc---CC
Q 010563 154 --HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FN 228 (507)
Q Consensus 154 --~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~ 228 (507)
.++.++.++|+||||++.+.| |.|....| +...-|..|.+++|||.+..+...-...+. .|+.+... .-
T Consensus 509 rvtnlrR~t~lv~deaDrmfdmg--fePq~~~I--i~nlrpdrQtvlfSatfpr~m~~la~~vl~--~Pveiiv~~~svV 582 (997)
T KOG0334|consen 509 RVTNLRRVTYLVLDEADRMFDMG--FEPQITRI--LQNLRPDRQTVLFSATFPRSMEALARKVLK--KPVEIIVGGRSVV 582 (997)
T ss_pred ccccccccceeeechhhhhheec--cCcccchH--HhhcchhhhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEccceeE
Confidence 223335599999999999888 88876663 444457899999999999886664444444 45433222 12
Q ss_pred CCceEEEEEeecchhhHHHHHHHHHHh-cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcC
Q 010563 229 RPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (507)
Q Consensus 229 ~~ni~~~v~~~~~~~~~~~~l~~~l~~-~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 307 (507)
...+...+.......+++..|.++|.. ....++||||.+...|..+.+.|.+.|+.+..+||+.++.+|..+++.|++|
T Consensus 583 ~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~ 662 (997)
T KOG0334|consen 583 CKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG 662 (997)
T ss_pred eccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc
Confidence 234444555444457888888888865 3467899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 308 ~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
.+.+||||+.+++|+|++++.+||||++|...+.|+||.||+||.|..|.|++|..+.+....-.|.+.
T Consensus 663 ~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~a 731 (997)
T KOG0334|consen 663 VVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKA 731 (997)
T ss_pred CceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999776665555443
No 50
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.2e-39 Score=325.98 Aligned_cols=340 Identities=19% Similarity=0.269 Sum_probs=273.6
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEecCh
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P~ 87 (507)
...|+.+.+..+++..|++. ||..++++|..||++++.+-|+||++..|+|||++|.+.++.. +...+||+||
T Consensus 24 ~~~fe~l~l~r~vl~glrrn-~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PT 102 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRN-AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPT 102 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhh-cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecc
Confidence 45677788889999999985 9999999999999999999999999999999999998877753 5679999999
Q ss_pred HHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH--HhhhccCCcc
Q 010563 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLN 160 (507)
Q Consensus 88 ~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l--~~~~~~~~l~ 160 (507)
|+++.|..+.+... |.++..+-+++....... .+. ..+|+++|| |++..| ....+.+.++
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~---rlk----~~rIvIGtP------GRi~qL~el~~~n~s~vr 169 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLI---RLK----QTRIVIGTP------GRIAQLVELGAMNMSHVR 169 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhh---hhh----hceEEecCc------hHHHHHHHhcCCCcccee
Confidence 99999998888875 446666666654433221 111 255655554 554445 3345567799
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceE-----E
Q 010563 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF-----Y 234 (507)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~-----~ 234 (507)
++|+|||+.+.+-+. |+.+ +..+...+| ..|++++|||-+....+.+.+. |++|..++.+.+.+.++ +
T Consensus 170 lfVLDEADkL~~t~s-fq~~---In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~--mrdp~lVr~n~~d~~L~GikQyv 243 (980)
T KOG4284|consen 170 LFVLDEADKLMDTES-FQDD---INIIINSLPQIRQVAAFSATYPRNLDNLLSKF--MRDPALVRFNADDVQLFGIKQYV 243 (980)
T ss_pred EEEeccHHhhhchhh-HHHH---HHHHHHhcchhheeeEEeccCchhHHHHHHHH--hcccceeecccCCceeechhhee
Confidence 999999999998553 6644 455566667 6789999999999887766665 46787777666655442 1
Q ss_pred EEEeec-----chhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCc
Q 010563 235 EVRYKD-----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (507)
Q Consensus 235 ~v~~~~-----~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (507)
...... ....+++.|.++++..+-...||||+....|+.++.+|+..|+.|.++.|.|++++|..+.+.+++-.+
T Consensus 244 ~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~ 323 (980)
T KOG4284|consen 244 VAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV 323 (980)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceE
Confidence 221111 123577888888888888899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchH-HHHHHH
Q 010563 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFI 373 (507)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~-~~~~~~ 373 (507)
+|||+|+..++|||-++|.+||+.|.|.+-++|.||+|||||+|-.|.+++|...... +.+..+
T Consensus 324 rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 324 RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999876543 444433
No 51
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-39 Score=310.44 Aligned_cols=341 Identities=21% Similarity=0.326 Sum_probs=268.0
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEecCh
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P~ 87 (507)
...|+++.|+++|++.+.. +||+.|+.+|+.||..+..|.|+++.+++|+|||.+|.++++.. ...++++.|+
T Consensus 25 vdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPt 103 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPT 103 (397)
T ss_pred hhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcch
Confidence 4679999999999999999 79999999999999999999999999999999999999999865 4579999999
Q ss_pred HHHHHHHHHHHHHcCC----ceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhccCCccE
Q 010563 88 IALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (507)
Q Consensus 88 ~~L~~q~~~~l~~~gi----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~~l~~ 161 (507)
++|+.|........|- .+....++....... ..+.... ..+ ++.||++...+.+ ......+.+
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~---~~i~~~~--~hi------vvGTpgrV~dml~~~~l~~~~iKm 172 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRRED---QALLKDK--PHI------VVGTPGRVFDMLNRGSLSTDGIKM 172 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhh---hhhhccC--cee------ecCCchhHHHhhccccccccceeE
Confidence 9999999887777653 333233333222111 1111111 234 4455555444432 223445899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCC---CceEEEEE
Q 010563 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---PNLFYEVR 237 (507)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~---~ni~~~v~ 237 (507)
+|+|||+.++..| |+..+..+ .... ++++++++|||.++.+..--.+ .+.+|..+....+. .-+.....
T Consensus 173 fvlDEaDEmLs~g--fkdqI~~i---f~~lp~~vQv~l~SAT~p~~vl~vt~~--f~~~pv~i~vkk~~ltl~gikq~~i 245 (397)
T KOG0327|consen 173 FVLDEADEMLSRG--FKDQIYDI---FQELPSDVQVVLLSATMPSDVLEVTKK--FMREPVRILVKKDELTLEGIKQFYI 245 (397)
T ss_pred EeecchHhhhccc--hHHHHHHH---HHHcCcchhheeecccCcHHHHHHHHH--hccCceEEEecchhhhhhheeeeee
Confidence 9999999999987 78666555 3333 4899999999999998773333 34666655433222 11211111
Q ss_pred eecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc
Q 010563 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (507)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (507)
.... ++++..|..+.+ .....+|||||++.+..+...|...|..+..+|+.|.+.+|..+++.|+.|..+|||+|+.
T Consensus 246 ~v~k-~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl 322 (397)
T KOG0327|consen 246 NVEK-EEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDL 322 (397)
T ss_pred eccc-cccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccc
Confidence 1111 348888888888 4457899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
+++|+|+.++..||+|++|...++|+||+||+||.|.+|.++.++...|...++.+.+.
T Consensus 323 ~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~ 381 (397)
T KOG0327|consen 323 LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKF 381 (397)
T ss_pred cccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHh
Confidence 99999999999999999999999999999999999999999999999999888877753
No 52
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-39 Score=323.85 Aligned_cols=339 Identities=19% Similarity=0.254 Sum_probs=258.5
Q ss_pred ChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEEEecChHH
Q 010563 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLIA 89 (507)
Q Consensus 21 ~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~-----------~~~~lvi~P~~~ 89 (507)
.-.+.+.+.+.. .||..++|.|.+|++.++.++|+++++|||+|||++|.+|++.+ +-+++|++|+++
T Consensus 142 ~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptre 220 (593)
T KOG0344|consen 142 SMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRE 220 (593)
T ss_pred hhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHH
Confidence 335667777777 59999999999999999999999999999999999999998842 247999999999
Q ss_pred HHHHHHHHHHHcCCc------eEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhh----hccCCc
Q 010563 90 LMENQVIGLKEKGIA------GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLL 159 (507)
Q Consensus 90 L~~q~~~~l~~~gi~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~----~~~~~l 159 (507)
|+.|....+.++.+. +..+........+..... ...+++++.|| ..+..+... .....+
T Consensus 221 La~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~-----~~k~dili~TP------~ri~~~~~~~~~~idl~~V 289 (593)
T KOG0344|consen 221 LAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS-----DEKYDILISTP------MRIVGLLGLGKLNIDLSKV 289 (593)
T ss_pred HHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhH-----HHHHHHHhcCH------HHHHHHhcCCCccchhhee
Confidence 999999999987533 111111111111110000 01245555544 433333332 244558
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC---CCceEEEE
Q 010563 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEV 236 (507)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~ni~~~v 236 (507)
..+|+|||+.+.+. ..|+.....+-..+.. |++.+-+||||.+..+.+... +.+.++..+..+.. ...+....
T Consensus 290 ~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE~~~--~i~~~~~~vivg~~~sa~~~V~Qel 365 (593)
T KOG0344|consen 290 EWLVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEEWAE--LIKSDLKRVIVGLRNSANETVDQEL 365 (593)
T ss_pred eeEeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHHHHH--HhhccceeEEEecchhHhhhhhhhh
Confidence 89999999999876 2266555555444433 688889999999988876332 33334433322211 22333344
Q ss_pred EeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHH-HhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 010563 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (507)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L-~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (507)
........++-.+.+++...-..+++||+.+.+.|.+|...| .-.++.+..+||+.++.+|.+++++|+.|+++|||||
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT 445 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT 445 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh
Confidence 444445677888888888888889999999999999999999 5668999999999999999999999999999999999
Q ss_pred CcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
+.+++|||+.+|+.||+||.|.+..+|+||+||+||+|+.|.+++||+..|..+++.+..
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999988876654
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-38 Score=344.97 Aligned_cols=337 Identities=21% Similarity=0.222 Sum_probs=235.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHH
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~ 92 (507)
+++++++++.+.+.+.+ .|+. ++++|.++++.+.+|+++++++|||+|||+++.++++. .++++|+++|+++|+.
T Consensus 2 ~~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAM 79 (674)
T ss_pred cHhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHH
Confidence 35567789999999988 5887 99999999999999999999999999999999888764 4788999999999999
Q ss_pred HHHHHHHH---cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc
Q 010563 93 NQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (507)
Q Consensus 93 q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (507)
|+.+.+++ .|+.+....+....... .+ ...+++++|||.+..--. .......++++|||||||+
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~----~~~dIiv~Tpek~~~l~~----~~~~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPD-----FI----KRYDVVILTSEKADSLIH----HDPYIINDVGLIVADEIHI 146 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChh-----hh----ccCCEEEECHHHHHHHHh----CChhHHhhcCEEEEecchh
Confidence 99998875 46666665544332111 01 136888888885422100 0011234589999999999
Q ss_pred ccccCCCCHHHHHHHHH-HHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEee-----cchh
Q 010563 170 ISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-----DLLD 243 (507)
Q Consensus 170 i~~~g~~fr~~~~~l~~-l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~-----~~~~ 243 (507)
+.+.+ +.+.+..+.. ++...++.+++++|||++.. .++.++++... +...+....+...+... +...
T Consensus 147 l~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~---~~~~~r~vpl~~~i~~~~~~~~~~~~ 219 (674)
T PRK01172 147 IGDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASL---IKSNFRPVPLKLGILYRKRLILDGYE 219 (674)
T ss_pred ccCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCc---cCCCCCCCCeEEEEEecCeeeecccc
Confidence 97644 4444554432 33344678999999999754 56677775321 22222111121111110 0000
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCC-------------------------CceeEecCCCCHHH
Q 010563 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG-------------------------ISCAAYHAGLNDKA 296 (507)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g-------------------------~~~~~~h~~l~~~~ 296 (507)
.....+..++.. ..++++||||++++.++.++..|.+.. ..+..+||+|++++
T Consensus 220 ~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~e 299 (674)
T PRK01172 220 RSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQ 299 (674)
T ss_pred cccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHH
Confidence 000112222222 235689999999999999999986531 24788999999999
Q ss_pred HHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCC---------CCCHHHHHHHhcccCCCCC--CceEEEEeccc
Q 010563 297 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---------PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD 365 (507)
Q Consensus 297 R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~---------p~s~~~y~Q~~GRagR~g~--~~~~i~~~~~~ 365 (507)
|..+++.|++|.++|||||+++++|||+|+.++|| .+. |.|..+|.||+|||||.|. .|.++++....
T Consensus 300 R~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 300 RRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999999999865555 433 5689999999999999985 56677775443
Q ss_pred -hHHHHHHHHH
Q 010563 366 -DRRRMEFILS 375 (507)
Q Consensus 366 -d~~~~~~~~~ 375 (507)
+...++.++.
T Consensus 379 ~~~~~~~~~l~ 389 (674)
T PRK01172 379 ASYDAAKKYLS 389 (674)
T ss_pred ccHHHHHHHHc
Confidence 3566666664
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.8e-37 Score=344.71 Aligned_cols=290 Identities=23% Similarity=0.272 Sum_probs=210.0
Q ss_pred EEcCCCchHHHHHHHHHhcC----------------CCeEEEecChHHHHHHHHHHHHH----------------cCCce
Q 010563 58 CLMPTGGGKSMCYQIPALAK----------------PGIVLVVSPLIALMENQVIGLKE----------------KGIAG 105 (507)
Q Consensus 58 v~apTG~GKTl~~~lp~l~~----------------~~~~lvi~P~~~L~~q~~~~l~~----------------~gi~~ 105 (507)
|++|||||||++|.+|++.+ ..++|||+|+++|+.|+.+.|+. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999998631 35799999999999999998863 35777
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc--cCCCCHHHHHH
Q 010563 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRK 183 (507)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~~ 183 (507)
...++..+..++..... . ..+|+++|||.+..- +.. ........+++|||||+|.+.+ +|..+...+.+
T Consensus 81 ~vrtGDt~~~eR~rll~----~--ppdILVTTPEsL~~L--Lts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeR 151 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTR----N--PPDILITTPESLYLM--LTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLER 151 (1490)
T ss_pred EEEECCCCHHHHHHHhc----C--CCCEEEecHHHHHHH--Hhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHH
Confidence 78888887776644322 1 368999999966321 000 1112345699999999999975 57666666666
Q ss_pred HHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccC-CCC-ceEEEEEeecch------------------h
Q 010563 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRP-NLFYEVRYKDLL------------------D 243 (507)
Q Consensus 184 l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-~~~-ni~~~v~~~~~~------------------~ 243 (507)
|..+.. .+.|+|++|||.++. +++.++++...+..+.... .++ ++.+.+...+.. .
T Consensus 152 L~~l~~--~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~ 227 (1490)
T PRK09751 152 LDALLH--TSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREG 227 (1490)
T ss_pred HHHhCC--CCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhh
Confidence 655432 368999999999874 5678888766554443322 222 222222111100 0
Q ss_pred ----hHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCC---------------------------------Ccee
Q 010563 244 ----DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---------------------------------ISCA 286 (507)
Q Consensus 244 ----~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g---------------------------------~~~~ 286 (507)
.....+...+. ...++||||||++.|+.++..|++.. ..+.
T Consensus 228 ~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 305 (1490)
T PRK09751 228 SIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIAR 305 (1490)
T ss_pred hhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeee
Confidence 00112222222 34679999999999999999997641 1257
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCC-CCCceEEEEe
Q 010563 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYY 362 (507)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~-g~~~~~i~~~ 362 (507)
.|||+|+.++|..+++.|++|++++||||+++++|||+++|++||+++.|.|+.+|+||+||+||. |..+.++++.
T Consensus 306 ~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 306 SHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred eccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999996 3445566443
No 55
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.2e-36 Score=320.61 Aligned_cols=317 Identities=16% Similarity=0.137 Sum_probs=215.5
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHhcC------CCeEEEecChHHHHHHHHHH
Q 010563 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALMENQVIG 97 (507)
Q Consensus 25 ~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~-d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P~~~L~~q~~~~ 97 (507)
+.....++..||+ |+|+|.++++.++.|+ ++++.+|||+|||.+|.++.+.. ....++++|+++|+.|..+.
T Consensus 3 ~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 3 KFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHH
Confidence 4455666667998 9999999999999998 57778999999999655433321 22455577999999999988
Q ss_pred HHHcC---------------------------CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHH-
Q 010563 98 LKEKG---------------------------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK- 149 (507)
Q Consensus 98 l~~~g---------------------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~- 149 (507)
+.+++ +++..+.++...... +..+.. ...|+++|++++....+..-
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q---~~~l~~---~p~IIVgT~D~i~sr~L~~gY 155 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE---WMLDPH---RPAVIVGTVDMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH---HHhcCC---CCcEEEECHHHHcCCcccccc
Confidence 87754 445556666554322 222322 36899999877655332110
Q ss_pred -----H--HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CCCEEEEeecCChhhHHHHHHHhCCCC
Q 010563 150 -----L--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQN 219 (507)
Q Consensus 150 -----l--~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~---~~~~i~lSAT~~~~~~~~i~~~l~~~~ 219 (507)
+ .+....+++.+||+|||| .+.| |......|.......+ +.++++||||++..+.... ..+ +.+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~-~~~-~~~ 229 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRT-TLL-SAE 229 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHH-HHH-ccC
Confidence 0 011124568999999999 4445 8877766655422222 2689999999987765432 222 223
Q ss_pred CeEEecc---CCCCceEEEEEeecchhhHHHH----HHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCC
Q 010563 220 PLVLKSS---FNRPNLFYEVRYKDLLDDAYAD----LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (507)
Q Consensus 220 ~~~~~~~---~~~~ni~~~v~~~~~~~~~~~~----l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l 292 (507)
+..+... ....++...+ .. ....+... +..++. ..++++||||||++.++.+++.|++.++ ..+||+|
T Consensus 230 p~~i~V~~~~l~a~ki~q~v-~v-~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m 304 (844)
T TIGR02621 230 DYKHPVLKKRLAAKKIVKLV-PP-SDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTL 304 (844)
T ss_pred CceeecccccccccceEEEE-ec-ChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCC
Confidence 3222111 1111222211 11 11222222 332333 3456899999999999999999998886 8999999
Q ss_pred CHHHHH-----HHHHHHhc----CC-------ceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCc
Q 010563 293 NDKARS-----SVLDDWIS----SR-------KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (507)
Q Consensus 293 ~~~~R~-----~~~~~f~~----g~-------~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~ 356 (507)
++.+|. .++++|++ |+ ..|||||+++++|||++. .+||++..| .++|+||+||+||.|+.+
T Consensus 305 ~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 305 RGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred CHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 999999 78999987 44 689999999999999986 888887766 799999999999999854
Q ss_pred e-EEEEe
Q 010563 357 K-SLLYY 362 (507)
Q Consensus 357 ~-~i~~~ 362 (507)
. .+.++
T Consensus 382 ~~~i~vv 388 (844)
T TIGR02621 382 ACQIAVV 388 (844)
T ss_pred CceEEEE
Confidence 3 34444
No 56
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=300.39 Aligned_cols=335 Identities=23% Similarity=0.308 Sum_probs=250.6
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHH---hc-CCCeEEEecChHH
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPA---LA-KPGIVLVVSPLIA 89 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~-i~~g~d~lv~apTG~GKTl~~~lp~---l~-~~~~~lvi~P~~~ 89 (507)
.....+++++++.+.|+. -|+..+.|.|..++++ +++|+|.+|+++|+||||++.-++- +. .+++.|+++|+.+
T Consensus 194 ~~vdeLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVA 272 (830)
T COG1202 194 VPVDELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVA 272 (830)
T ss_pred ccccccCCcHHHHHHHHh-cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHH
Confidence 345678899999999998 5999999999999988 6799999999999999999887643 33 4789999999999
Q ss_pred HHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEe
Q 010563 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (507)
Q Consensus 90 L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViD 165 (507)
|++|..+.++. +|+.+.+--+..-.+..... -.....++.+|+++|.|-+-. .+..-...+.++.||||
T Consensus 273 LANQKy~dF~~rYs~LglkvairVG~srIk~~~~p--v~~~t~~dADIIVGTYEGiD~-----lLRtg~~lgdiGtVVID 345 (830)
T COG1202 273 LANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP--VVVDTSPDADIIVGTYEGIDY-----LLRTGKDLGDIGTVVID 345 (830)
T ss_pred hhcchHHHHHHHhhcccceEEEEechhhhcccCCc--cccCCCCCCcEEEeechhHHH-----HHHcCCcccccceEEee
Confidence 99999998877 56665443222111111110 012234568899998885421 22222556789999999
Q ss_pred ccccccc--cCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchh
Q 010563 166 EAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243 (507)
Q Consensus 166 EaH~i~~--~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~ 243 (507)
|+|.+.+ .|+... --+++++..+|+.|+|+||||..+. ..+.+.|+++-... .-..-.+..++.......
T Consensus 346 EiHtL~deERG~RLd---GLI~RLr~l~~~AQ~i~LSATVgNp--~elA~~l~a~lV~y---~~RPVplErHlvf~~~e~ 417 (830)
T COG1202 346 EIHTLEDEERGPRLD---GLIGRLRYLFPGAQFIYLSATVGNP--EELAKKLGAKLVLY---DERPVPLERHLVFARNES 417 (830)
T ss_pred eeeeccchhcccchh---hHHHHHHHhCCCCeEEEEEeecCCh--HHHHHHhCCeeEee---cCCCCChhHeeeeecCch
Confidence 9999976 565332 3467788889999999999998876 45677777642221 111122344444444445
Q ss_pred hHHHHHHHHHHh--------cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 010563 244 DAYADLCSVLKA--------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (507)
Q Consensus 244 ~~~~~l~~~l~~--------~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (507)
++.+.+..+.+. .-.+++|||++|++.|+.++..|..+|+++.+||+||+..+|+.+...|.++++.++|+|
T Consensus 418 eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT 497 (830)
T COG1202 418 EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT 497 (830)
T ss_pred HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeeh
Confidence 677777666643 235689999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCccEEE---EeCCCC-CHHHHHHHhcccCCCCC--CceEEEEeccc
Q 010563 316 VAFGMGIDRKDVRLVC---HFNIPK-SMEAFYQESGRAGRDQL--PSKSLLYYGMD 365 (507)
Q Consensus 316 ~a~~~GiD~p~v~~VI---~~~~p~-s~~~y~Q~~GRagR~g~--~~~~i~~~~~~ 365 (507)
-|++.|||+|.-.+|+ -++.-| |+.+|.|+.|||||.+- .|..+++..+.
T Consensus 498 AAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 498 AALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999654443 123333 89999999999999875 56666665543
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=8.4e-36 Score=335.07 Aligned_cols=306 Identities=20% Similarity=0.254 Sum_probs=220.9
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEecChHHHHHHHHHHHHH
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l---~~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
+++.+.+++.+|+ .|+++|..+++.++.|+|++++||||+|||+.++++++ ..+.+++||+||++|+.|+.+.++.
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH
Confidence 4455677788898 69999999999999999999999999999975444332 2467899999999999999999998
Q ss_pred cCC----ceEEecCCC--CHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC
Q 010563 101 KGI----AGEFLSSTQ--TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (507)
Q Consensus 101 ~gi----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (507)
++. ....+..+. +..........+..+. .+|+++||+.+. ..........++++||||||++++|+
T Consensus 146 l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~--~~IlV~Tp~rL~------~~~~~l~~~~~~~lVvDEaD~~L~~~ 217 (1176)
T PRK09401 146 FGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD--FDILVTTSQFLS------KNFDELPKKKFDFVFVDDVDAVLKSS 217 (1176)
T ss_pred HhhhcCceEEEEEccCCcchhHHHHHHHHHhcCC--CCEEEECHHHHH------HHHHhccccccCEEEEEChHHhhhcc
Confidence 653 333343332 2344444455555443 678777776543 22223344559999999999999876
Q ss_pred CC---------CH------------------HHHHHHHHHHHhCC-----CCCEEEEeecCChh-hHHHHHHH-hCCCCC
Q 010563 175 HD---------FR------------------PSYRKLSSLRNYLP-----DVPILALTATAAPK-VQKDVMES-LCLQNP 220 (507)
Q Consensus 175 ~~---------fr------------------~~~~~l~~l~~~~~-----~~~~i~lSAT~~~~-~~~~i~~~-l~~~~~ 220 (507)
++ |. +.|..+..+...+. +.+++++|||+++. +...+... +++
T Consensus 218 k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~--- 294 (1176)
T PRK09401 218 KNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGF--- 294 (1176)
T ss_pred cchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceE---
Confidence 43 42 33444444544332 57899999999875 33222221 111
Q ss_pred eEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchh---HHHHHHHHHhCCCceeEecCCCCHHHH
Q 010563 221 LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDKAR 297 (507)
Q Consensus 221 ~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~---~~~l~~~L~~~g~~~~~~h~~l~~~~R 297 (507)
.+-.......|+...+...+ ++...|..+++..+ ..+||||++++. ++.+++.|+..|+++..+||+| +
T Consensus 295 ~v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----~ 366 (1176)
T PRK09401 295 EVGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----E 366 (1176)
T ss_pred EecCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH----H
Confidence 11111223345544333222 45666777776654 479999999888 9999999999999999999999 2
Q ss_pred HHHHHHHhcCCceEEEE----eCcccccccCCC-ccEEEEeCCCC------CHHHHHHHhcccC
Q 010563 298 SSVLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK------SMEAFYQESGRAG 350 (507)
Q Consensus 298 ~~~~~~f~~g~~~VLVa----T~a~~~GiD~p~-v~~VI~~~~p~------s~~~y~Q~~GRag 350 (507)
..+++|++|+++|||| |++++||||+|+ |++||||++|+ ..+.|.+++||+-
T Consensus 367 -~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 367 -RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred -HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 2359999999999999 689999999999 89999999998 6788999999985
No 58
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.7e-36 Score=306.51 Aligned_cols=302 Identities=17% Similarity=0.108 Sum_probs=193.1
Q ss_pred CEEEEcCCCchHHHHHHHHHhc-----CCCeEEEecChHHHHHHHHHHHHHc-CCceEEecCCCCHHH---------HHH
Q 010563 55 DCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEK-GIAGEFLSSTQTMQV---------KTK 119 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~l~-----~~~~~lvi~P~~~L~~q~~~~l~~~-gi~~~~~~~~~~~~~---------~~~ 119 (507)
|+++.+|||+|||++|++|++. ..+++++++|+++|+.|+.++++.+ |.....+++...... ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 6899999999999999999883 4578999999999999999999995 655555554332111 011
Q ss_pred HHHHhhcC---CCcccEEEECcccccChhhH---HHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCC
Q 010563 120 IYEDLDSG---KPSLRLLYVTPELTATPGFM---SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (507)
Q Consensus 120 ~~~~~~~~---~~~~~il~~tpe~~~t~~~~---~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~ 193 (507)
........ .....++++||+.+...-+. ......... ..++|||||||.+.+++..+ +..+..... ..+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~-~~~~iViDE~h~~~~~~~~~---l~~~l~~l~-~~~ 155 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASI-ANSLLIFDEVHFYDEYTLAL---ILAVLEVLK-DND 155 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHh-cCCEEEEeCCCCCCHHHHHH---HHHHHHHHH-HcC
Confidence 11111111 01245666677654321111 001111111 13789999999998865322 333222222 247
Q ss_pred CCEEEEeecCChhhHHHHHHHhCCC-CCeEEeccCCCCceEEEEE-eecchhhHHHHHHHHHHh-cCCccEEEEeccchh
Q 010563 194 VPILALTATAAPKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVR-YKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTT 270 (507)
Q Consensus 194 ~~~i~lSAT~~~~~~~~i~~~l~~~-~~~~~~~~~~~~ni~~~v~-~~~~~~~~~~~l~~~l~~-~~~~~~IVf~~s~~~ 270 (507)
.|++++|||++..... +....... .+........+....+.+. .......+...+..+++. ..++++||||+|++.
T Consensus 156 ~~~i~~SATlp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKE-YAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHH-HHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 8999999999865433 33322221 1111110000000011111 111111233344444433 235689999999999
Q ss_pred HHHHHHHHHhCCC--ceeEecCCCCHHHHHH----HHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHH
Q 010563 271 CDELSAYLSAGGI--SCAAYHAGLNDKARSS----VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 344 (507)
Q Consensus 271 ~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~----~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q 344 (507)
++.+++.|++.+. .+..+||++++.+|.. +++.|++|+.+|||||+++++|||++ +++||++..| +++|+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iq 311 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQ 311 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHH
Confidence 9999999998766 4899999999999976 48899999999999999999999995 8899988766 899999
Q ss_pred HhcccCCCCCCc----eEEEEeccc
Q 010563 345 ESGRAGRDQLPS----KSLLYYGMD 365 (507)
Q Consensus 345 ~~GRagR~g~~~----~~i~~~~~~ 365 (507)
|+||+||.|+.. ..++|+...
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecC
Confidence 999999998643 455555433
No 59
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-37 Score=293.87 Aligned_cols=340 Identities=19% Similarity=0.235 Sum_probs=270.1
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-------CCeEEEecCh
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSPL 87 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~-------~~~~lvi~P~ 87 (507)
-.|+.++|+..+.+++.+. ||..|+|+|+..|+.+++|+|+...+-||+|||.||++|++++ +-++++++|+
T Consensus 21 g~fqsmgL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCccccCCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 4588899999999999885 9999999999999999999999999999999999999999853 3489999999
Q ss_pred HHHHHHHHHHHHHcCC----ceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEE
Q 010563 88 IALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (507)
Q Consensus 88 ~~L~~q~~~~l~~~gi----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iV 163 (507)
++|+.|..+.++.+|- +...+.++... .+.+..+.. +.+++++||-.+..-+. .-...+..+.+||
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~---eeqf~~l~~---npDii~ATpgr~~h~~v----em~l~l~sveyVV 169 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSI---EEQFILLNE---NPDIIIATPGRLLHLGV----EMTLTLSSVEYVV 169 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchH---HHHHHHhcc---CCCEEEecCceeeeeeh----heeccccceeeee
Confidence 9999999999998754 23322222222 222333332 25677777765543221 1112344588999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC---CCceEEEEEee
Q 010563 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYK 239 (507)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~ni~~~v~~~ 239 (507)
+|||+.+.++|+ . .++..+....| +.+.++||||++..... ...-|+.+|..++...+ .+++..... .
T Consensus 170 fdEadrlfemgf--q---eql~e~l~rl~~~~QTllfSatlp~~lv~--fakaGl~~p~lVRldvetkise~lk~~f~-~ 241 (529)
T KOG0337|consen 170 FDEADRLFEMGF--Q---EQLHEILSRLPESRQTLLFSATLPRDLVD--FAKAGLVPPVLVRLDVETKISELLKVRFF-R 241 (529)
T ss_pred ehhhhHHHhhhh--H---HHHHHHHHhCCCcceEEEEeccCchhhHH--HHHccCCCCceEEeehhhhcchhhhhhee-e
Confidence 999999999884 3 56777777777 67999999999988776 55668888877763222 112211111 1
Q ss_pred cchhhHHHHHHHHHHhcC-CccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc
Q 010563 240 DLLDDAYADLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (507)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~-~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (507)
...+++...|..++.... ..+++|||.|+.+++.+...|+..|+.+..+++.|++.-|..-..+|..++..++|.|+.+
T Consensus 242 ~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdva 321 (529)
T KOG0337|consen 242 VRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVA 321 (529)
T ss_pred eccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhh
Confidence 123577888888887654 3579999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHH
Q 010563 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (507)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~ 373 (507)
.+|+|+|-...||+||.|.+..-|.||+||+.|.|..|.++.++.+.|...+-.+
T Consensus 322 aRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDL 376 (529)
T ss_pred hccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhh
Confidence 9999999999999999999999999999999999999999999988877665443
No 60
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=4e-35 Score=295.57 Aligned_cols=293 Identities=18% Similarity=0.205 Sum_probs=199.7
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHc--------CCceEEecCC
Q 010563 42 KQLDAIQAVLSGRD--CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK--------GIAGEFLSST 111 (507)
Q Consensus 42 ~Q~~~i~~i~~g~d--~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~--------gi~~~~~~~~ 111 (507)
+|.++++++.++++ +++.+|||+|||++|++|++.....+++++|+++|++||.++++++ +..+..+.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 59999999999874 7889999999999999999988889999999999999999998874 2233333332
Q ss_pred CCHHHHHHHH---HHhhcC------------CCcccEEEECcccccChhhHHHHHhh----------hccCCccEEEEec
Q 010563 112 QTMQVKTKIY---EDLDSG------------KPSLRLLYVTPELTATPGFMSKLKKI----------HSRGLLNLVAIDE 166 (507)
Q Consensus 112 ~~~~~~~~~~---~~~~~~------------~~~~~il~~tpe~~~t~~~~~~l~~~----------~~~~~l~~iViDE 166 (507)
......... .....+ .....+++++|+++. .+.+. .....+++||+||
T Consensus 81 -~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~------~llr~~~~~~~~~~~~~~~~~~~iV~DE 153 (357)
T TIGR03158 81 -TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFV------YLTRFAYIDRGDIAAGFYTKFSTVIFDE 153 (357)
T ss_pred -chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHH------HHHhhhccCcccchhhhhcCCCEEEEec
Confidence 222111111 000011 112345555555442 22110 0124689999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccC------------C-----
Q 010563 167 AHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------------N----- 228 (507)
Q Consensus 167 aH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~------------~----- 228 (507)
+|.++.|+.++...+..+..+.... ...+++++|||+++.+...+...+.+..+.....+. .
T Consensus 154 ~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~ 233 (357)
T TIGR03158 154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQS 233 (357)
T ss_pred ccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccc
Confidence 9999988876666554444443322 257999999999998877776553333343322222 0
Q ss_pred -C---CceEEEEEeecc-hhhHHHHHHH----HHHhcCCccEEEEeccchhHHHHHHHHHhCC--CceeEecCCCCHHHH
Q 010563 229 -R---PNLFYEVRYKDL-LDDAYADLCS----VLKANGDTCAIVYCLERTTCDELSAYLSAGG--ISCAAYHAGLNDKAR 297 (507)
Q Consensus 229 -~---~ni~~~v~~~~~-~~~~~~~l~~----~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g--~~~~~~h~~l~~~~R 297 (507)
+ |++...+..... ....+..+.+ .++...++++||||+|++.++.++..|++.| +.+..+||.+++.+|
T Consensus 234 ~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 234 FRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred cceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 1 345444443211 1112222222 2333456789999999999999999999864 578889999999988
Q ss_pred HHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccC
Q 010563 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (507)
Q Consensus 298 ~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRag 350 (507)
.+. ++.+|||||+++++|||++.+ +|| ++ |.++++|+||+||+|
T Consensus 314 ~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 754 478999999999999999987 666 45 899999999999997
No 61
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-34 Score=284.76 Aligned_cols=316 Identities=22% Similarity=0.269 Sum_probs=234.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHHHHHHHHHHH-cCCc---eE
Q 010563 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKE-KGIA---GE 106 (507)
Q Consensus 35 g~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~~q~~~~l~~-~gi~---~~ 106 (507)
+.-++|.+|..+....+.+ ++++++|||-|||+++.+.+.. .++++|+++||+-|+.|+.+.+++ +|++ .+
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 3457899999999888776 8999999999999888776652 355899999999999999999998 6774 45
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 010563 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (507)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (507)
.+++.....++...|.. .++++.||..+.+. .+....+...+.++|+||||+-.. ..+|..+..
T Consensus 91 ~ltGev~p~~R~~~w~~-------~kVfvaTPQvveND----l~~Grid~~dv~~lifDEAHRAvG-----nyAYv~Va~ 154 (542)
T COG1111 91 ALTGEVRPEEREELWAK-------KKVFVATPQVVEND----LKAGRIDLDDVSLLIFDEAHRAVG-----NYAYVFVAK 154 (542)
T ss_pred eecCCCChHHHHHHHhh-------CCEEEeccHHHHhH----HhcCccChHHceEEEechhhhccC-----cchHHHHHH
Confidence 77888888888877764 68999999888663 234455556689999999999643 224666655
Q ss_pred H-HHhCCCCCEEEEeecCChh--hHHHHHHHhCCCCCeEEecc-CC-CCc---eEEEEEeecc-----------------
Q 010563 187 L-RNYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLKSS-FN-RPN---LFYEVRYKDL----------------- 241 (507)
Q Consensus 187 l-~~~~~~~~~i~lSAT~~~~--~~~~i~~~l~~~~~~~~~~~-~~-~~n---i~~~v~~~~~----------------- 241 (507)
. .....+..+++|||||... -...+++.|++.+..+-... .+ +|. +.......+.
T Consensus 155 ~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~ 234 (542)
T COG1111 155 EYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKP 234 (542)
T ss_pred HHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHH
Confidence 3 3333456799999999753 45567788887543222100 00 000 0000000000
Q ss_pred ------------------------------------hh------------------------------------------
Q 010563 242 ------------------------------------LD------------------------------------------ 243 (507)
Q Consensus 242 ------------------------------------~~------------------------------------------ 243 (507)
..
T Consensus 235 ~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~ 314 (542)
T COG1111 235 RLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEAT 314 (542)
T ss_pred HHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhc
Confidence 00
Q ss_pred ---------------------------------hHHHHHH----HHHHhcCCccEEEEeccchhHHHHHHHHHhCCCcee
Q 010563 244 ---------------------------------DAYADLC----SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (507)
Q Consensus 244 ---------------------------------~~~~~l~----~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~ 286 (507)
.|++.+. +.+++.++.++|||++.|++++.+.++|.+.|..+.
T Consensus 315 ~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~ 394 (542)
T COG1111 315 KGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR 394 (542)
T ss_pred ccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce
Confidence 0111222 223334567899999999999999999999988763
Q ss_pred ---------EecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCce
Q 010563 287 ---------AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (507)
Q Consensus 287 ---------~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~ 357 (507)
....||++++..+++++|++|+++|||||++.+.|+|+|++++||.|++..|..-++||.||+||. ++|.
T Consensus 395 ~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Gr 473 (542)
T COG1111 395 VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGR 473 (542)
T ss_pred eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCe
Confidence 234689999999999999999999999999999999999999999999999999999999999997 6899
Q ss_pred EEEEeccchHH
Q 010563 358 SLLYYGMDDRR 368 (507)
Q Consensus 358 ~i~~~~~~d~~ 368 (507)
.++++..+...
T Consensus 474 v~vLvt~gtrd 484 (542)
T COG1111 474 VVVLVTEGTRD 484 (542)
T ss_pred EEEEEecCchH
Confidence 99998877443
No 62
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.4e-34 Score=304.25 Aligned_cols=300 Identities=19% Similarity=0.245 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchHHHH---------HHHHHhc---------CCCeEEEecChHHHHHHHHHHHHH-c
Q 010563 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMC---------YQIPALA---------KPGIVLVVSPLIALMENQVIGLKE-K 101 (507)
Q Consensus 41 ~~Q~~~i~~i~~g~d~lv~apTG~GKTl~---------~~lp~l~---------~~~~~lvi~P~~~L~~q~~~~l~~-~ 101 (507)
..|+++++.+++|++++++|+||+|||.+ |++|.+. ..+.++|++|+++|+.|....+.+ .
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 37889999999999999999999999986 3333321 245899999999999998888765 2
Q ss_pred ------CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC
Q 010563 102 ------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (507)
Q Consensus 102 ------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~ 175 (507)
|.++....++..... .. ... ....++++|+.+. . .....+++|||||||.++..+.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~----~~-t~~--k~~~Ilv~T~~L~-l----------~~L~~v~~VVIDEaHEr~~~~D 308 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDEL----IN-TNP--KPYGLVFSTHKLT-L----------NKLFDYGTVIIDEVHEHDQIGD 308 (675)
T ss_pred CccccCCceEEEEECCcchHH----hh-ccc--CCCCEEEEeCccc-c----------cccccCCEEEccccccCccchh
Confidence 233444455444111 01 011 1256777775421 1 1234589999999999987662
Q ss_pred CCHHHHHHHHHHHHhCCC-CCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC-CCceEEEEEeec--------chhhH
Q 010563 176 DFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKD--------LLDDA 245 (507)
Q Consensus 176 ~fr~~~~~l~~l~~~~~~-~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~ni~~~v~~~~--------~~~~~ 245 (507)
.-+.-++...+. .++++||||++.++.. +.+.+ .++..+..+-. ...+........ .....
T Consensus 309 ------llL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~--~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~ 379 (675)
T PHA02653 309 ------IIIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFF--PNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEE 379 (675)
T ss_pred ------HHHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHh--cCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHH
Confidence 112223222232 4799999999877543 44444 35544433211 122221111100 00111
Q ss_pred HHHHHHHHHh---cCCccEEEEeccchhHHHHHHHHHhC--CCceeEecCCCCHHHHHHHHHHH-hcCCceEEEEeCccc
Q 010563 246 YADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDW-ISSRKQVVVATVAFG 319 (507)
Q Consensus 246 ~~~l~~~l~~---~~~~~~IVf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f-~~g~~~VLVaT~a~~ 319 (507)
...+...+.. ..++++||||+++++++.+++.|.+. ++.+..+||+|++. ++.+++| ++|+.+|||||++++
T Consensus 380 k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAE 457 (675)
T PHA02653 380 KKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLE 457 (675)
T ss_pred HHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhh
Confidence 1222233322 23457999999999999999999987 78999999999974 5667777 689999999999999
Q ss_pred ccccCCCccEEEEeC---CCC---------CHHHHHHHhcccCCCCCCceEEEEeccchHHHH
Q 010563 320 MGIDRKDVRLVCHFN---IPK---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (507)
Q Consensus 320 ~GiD~p~v~~VI~~~---~p~---------s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~ 370 (507)
+|||+|+|++||++| .|. |.++|.||+|||||. .+|.|+.+|+..+...+
T Consensus 458 RGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI 519 (675)
T PHA02653 458 SSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPI 519 (675)
T ss_pred ccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHH
Confidence 999999999999999 665 889999999999999 69999999998876443
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.2e-34 Score=305.09 Aligned_cols=298 Identities=16% Similarity=0.110 Sum_probs=206.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH---hcC-CCeEEEecChHHHHHHHHHHHHHcCCc----eEEe
Q 010563 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK-PGIVLVVSPLIALMENQVIGLKEKGIA----GEFL 108 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~---l~~-~~~~lvi~P~~~L~~q~~~~l~~~gi~----~~~~ 108 (507)
-.||++|.++++.++.++++++++|||+|||+++...+ +.. .+++|||+|+++|+.|+.+.+++++.. ...+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999998765432 233 348999999999999999999987531 1122
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 010563 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (507)
.++... .....++++||+.+.... .. ....+++|||||||++.. ..+..+.
T Consensus 193 ~~g~~~-------------~~~~~I~VaT~qsl~~~~-----~~--~~~~~~~iIvDEaH~~~~---------~~~~~il 243 (501)
T PHA02558 193 YSGTAK-------------DTDAPIVVSTWQSAVKQP-----KE--WFDQFGMVIVDECHLFTG---------KSLTSII 243 (501)
T ss_pred ecCccc-------------CCCCCEEEeeHHHHhhch-----hh--hccccCEEEEEchhcccc---------hhHHHHH
Confidence 222110 023578888887664321 11 134589999999999875 2233444
Q ss_pred HhCC-CCCEEEEeecCChhhHHH--HHHHhCCCCCeEEeccC----CCC---ceEEEE-Eee------------c-----
Q 010563 189 NYLP-DVPILALTATAAPKVQKD--VMESLCLQNPLVLKSSF----NRP---NLFYEV-RYK------------D----- 240 (507)
Q Consensus 189 ~~~~-~~~~i~lSAT~~~~~~~~--i~~~l~~~~~~~~~~~~----~~~---ni~~~v-~~~------------~----- 240 (507)
..++ ..++++||||+....... +...+| +.....+. ... ...+.. ... .
T Consensus 244 ~~~~~~~~~lGLTATp~~~~~~~~~~~~~fG---~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 320 (501)
T PHA02558 244 TKLDNCKFKFGLTGSLRDGKANILQYVGLFG---DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEI 320 (501)
T ss_pred HhhhccceEEEEeccCCCccccHHHHHHhhC---CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHH
Confidence 4554 456899999997543211 111221 11111100 000 000000 000 0
Q ss_pred ----chhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEE
Q 010563 241 ----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (507)
Q Consensus 241 ----~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (507)
..+.+...+..++.. ..+.+++|||.++++++.+++.|++.|.++..+||+++.++|..+++.|++|+..||||
T Consensus 321 ~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLva 400 (501)
T PHA02558 321 KYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVA 400 (501)
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 000111122222221 23457899999999999999999999999999999999999999999999999999999
Q ss_pred e-CcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 010563 315 T-VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (507)
Q Consensus 315 T-~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d 366 (507)
| +.+++|+|+|+++.||++.++.|...|+|++||++|.+..+...++|+.-|
T Consensus 401 T~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 401 SYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred EcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 8 899999999999999999999999999999999999886655555555443
No 64
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.9e-34 Score=313.70 Aligned_cols=334 Identities=23% Similarity=0.266 Sum_probs=244.8
Q ss_pred hHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEecChHHHHHHHHH
Q 010563 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVI 96 (507)
Q Consensus 22 l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~-----~~~~~lvi~P~~~L~~q~~~ 96 (507)
..+.+...+.+ .|...|+++|.+|+..+.+|++++|..|||||||+||++|++. ...++|+|.||+||++||++
T Consensus 55 ~~~~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHH
Confidence 34445666766 5888899999999999999999999999999999999999985 24578999999999999999
Q ss_pred HHHHc----C--CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 010563 97 GLKEK----G--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (507)
Q Consensus 97 ~l~~~----g--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (507)
+|+++ + +.+...++.....++..++. + ..+|++++|.|+-.......-.-.....++++|||||+|..
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~----~--pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIR----N--PPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHh----C--CCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 99884 4 56666666666666543332 2 37899999987754221111111112233899999999997
Q ss_pred cc-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeE-EeccCCCCceEEEEEeec-------
Q 010563 171 SS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKD------- 240 (507)
Q Consensus 171 ~~-~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~~~ni~~~v~~~~------- 240 (507)
-. .|.+.....++|..+...++ +.++|+.|||...... ....+....... +..+-......+.+...+
T Consensus 208 rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e--~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 208 RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE--FAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH--HHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhh
Confidence 43 46667777788888887776 5778999999876532 233333333322 222222222223232222
Q ss_pred ----chhhHHHHHHHHHHhcCCccEEEEeccchhHHHHH----HHHHhCC----CceeEecCCCCHHHHHHHHHHHhcCC
Q 010563 241 ----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS----AYLSAGG----ISCAAYHAGLNDKARSSVLDDWISSR 308 (507)
Q Consensus 241 ----~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~----~~L~~~g----~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (507)
........+...+-. .+-++|+|+.+++.++.++ ..+...+ ..+..|+|++...+|..+...|++|+
T Consensus 286 ~~r~s~~~~~~~~~~~~~~-~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~ 364 (851)
T COG1205 286 SIRRSALAELATLAALLVR-NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE 364 (851)
T ss_pred hcccchHHHHHHHHHHHHH-cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC
Confidence 111122222222222 3567999999999999997 4444445 56889999999999999999999999
Q ss_pred ceEEEEeCcccccccCCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
..++++|+++.-|||+.++..||..+.|. +..++.|+.|||||.++.+..++.+..+
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 99999999999999999999999999999 9999999999999999877777666533
No 65
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.9e-33 Score=294.98 Aligned_cols=326 Identities=21% Similarity=0.178 Sum_probs=233.8
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEecChHHHHHHHHHHHHH--
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-- 100 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~---~~~~lvi~P~~~L~~q~~~~l~~-- 100 (507)
+.++.++.+|.. ++|.|..+++.++.|+ ++.|.||+|||++|.+|++.. +..++|++|++.|+.|..+.+..
T Consensus 92 ~rEa~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 92 VREASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred HHHHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 345666778887 7799999999999999 999999999999999999853 67899999999999988888766
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh----------------------hhcc
Q 010563 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK----------------------IHSR 156 (507)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~----------------------~~~~ 156 (507)
+|+.+..+.++.+...+...+ ..+|+|+|.--+.-......+.. ..-.
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y--------~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 240 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAY--------GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLL 240 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHc--------CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcc
Confidence 589999998887655433322 36899999875532221111110 0112
Q ss_pred CCccEEEEeccccccc-----------c-C-CCCHHHHHHHHHH------------------------------------
Q 010563 157 GLLNLVAIDEAHCISS-----------W-G-HDFRPSYRKLSSL------------------------------------ 187 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~-----------~-g-~~fr~~~~~l~~l------------------------------------ 187 (507)
..+.+.||||+|.++= - + .+....|.....+
T Consensus 241 r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l 320 (656)
T PRK12898 241 RGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESL 320 (656)
T ss_pred cccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcc
Confidence 4478999999998731 0 0 0000111111000
Q ss_pred ------------------HHhC------------------------------------------------C---------
Q 010563 188 ------------------RNYL------------------------------------------------P--------- 192 (507)
Q Consensus 188 ------------------~~~~------------------------------------------------~--------- 192 (507)
...+ +
T Consensus 321 ~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It 400 (656)
T PRK12898 321 PPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARIT 400 (656)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeeh
Confidence 0000 0
Q ss_pred -------CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceE--EEEEeecchhhHHHHHHHHHHhc--CCccE
Q 010563 193 -------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF--YEVRYKDLLDDAYADLCSVLKAN--GDTCA 261 (507)
Q Consensus 193 -------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~--~~v~~~~~~~~~~~~l~~~l~~~--~~~~~ 261 (507)
-..+.+||||+... ..++.+.+++. ++..+.++|+.. +.........++...|.+.++.. .+.++
T Consensus 401 ~q~~Fr~Y~kl~GmTGTa~~~-~~El~~~y~l~---vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pv 476 (656)
T PRK12898 401 YQRFFRRYLRLAGMTGTAREV-AGELWSVYGLP---VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPV 476 (656)
T ss_pred HHHHHHhhHHHhcccCcChHH-HHHHHHHHCCC---eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 01367889998864 45667777664 333445555542 11111122356777788777653 25689
Q ss_pred EEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCC---Ccc-----EEEEe
Q 010563 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHF 333 (507)
Q Consensus 262 IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p---~v~-----~VI~~ 333 (507)
||||+|++.++.++..|.+.|+++..+||+++. |+..+..+..+...|+|||+++|+|+|++ +|+ +||++
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~ 554 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILT 554 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEc
Confidence 999999999999999999999999999998654 44545556666667999999999999999 777 99999
Q ss_pred CCCCCHHHHHHHhcccCCCCCCceEEEEeccchHH
Q 010563 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (507)
Q Consensus 334 ~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~ 368 (507)
++|.|...|.||+||+||.|.+|.++.|++.+|.-
T Consensus 555 d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 555 ERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred CCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 99999999999999999999999999999987743
No 66
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1e-32 Score=300.44 Aligned_cols=301 Identities=17% Similarity=0.157 Sum_probs=211.7
Q ss_pred HHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEecChHHHHHHHHHHHHH-cCCc----eEEecCCCCH
Q 010563 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLSSTQTM 114 (507)
Q Consensus 43 Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~---~~~~lvi~P~~~L~~q~~~~l~~-~gi~----~~~~~~~~~~ 114 (507)
-.+.+.++.+++++++.||||+|||++|.++++.. .++++|+.|+++++.+..+++.+ +|.. +.+.....
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~-- 84 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE-- 84 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc--
Confidence 34566777788999999999999999999998853 56899999999999999998854 4432 22211110
Q ss_pred HHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc-ccccCCCCHHHHHHHHHHHHh-CC
Q 010563 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNY-LP 192 (507)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~~-~~ 192 (507)
.......+|+|+||.++. ..+........+++|||||+|. ..+- ||--. -+..+... .+
T Consensus 85 ----------~~~s~~t~I~v~T~G~Ll-----r~l~~d~~L~~v~~VIiDEaHER~L~~--Dl~L~--ll~~i~~~lr~ 145 (819)
T TIGR01970 85 ----------NKVSRRTRLEVVTEGILT-----RMIQDDPELDGVGALIFDEFHERSLDA--DLGLA--LALDVQSSLRE 145 (819)
T ss_pred ----------cccCCCCcEEEECCcHHH-----HHHhhCcccccCCEEEEeccchhhhcc--chHHH--HHHHHHHhcCC
Confidence 011123678888876543 2333344567799999999995 3331 22211 12233332 35
Q ss_pred CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhh----HHHHHHHHHHhcCCccEEEEeccc
Q 010563 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD----AYADLCSVLKANGDTCAIVYCLER 268 (507)
Q Consensus 193 ~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~----~~~~l~~~l~~~~~~~~IVf~~s~ 268 (507)
+.++++||||++..... +.++ ..+.+.......| +...+........ ....+..+++. ..+.+|||++++
T Consensus 146 dlqlIlmSATl~~~~l~---~~l~-~~~vI~~~gr~~p-Ve~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~ 219 (819)
T TIGR01970 146 DLKILAMSATLDGERLS---SLLP-DAPVVESEGRSFP-VEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQ 219 (819)
T ss_pred CceEEEEeCCCCHHHHH---HHcC-CCcEEEecCccee-eeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCH
Confidence 78999999999876533 3332 2233222221111 1111111111111 12234444443 346799999999
Q ss_pred hhHHHHHHHHHh---CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCC--------
Q 010563 269 TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-------- 337 (507)
Q Consensus 269 ~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~-------- 337 (507)
++++.+++.|.+ .++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999987 478899999999999999999999999999999999999999999999999999985
Q ss_pred ----------CHHHHHHHhcccCCCCCCceEEEEeccchHHHHH
Q 010563 338 ----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (507)
Q Consensus 338 ----------s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~ 371 (507)
|..+|.||+|||||. .+|.|+.+|+..+...+.
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l~ 342 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRLP 342 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhhh
Confidence 346799999999999 699999999988765443
No 67
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.3e-32 Score=302.55 Aligned_cols=313 Identities=21% Similarity=0.270 Sum_probs=223.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHHHHHHHHHHHc-CC---ceEEe
Q 010563 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEFL 108 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~~q~~~~l~~~-gi---~~~~~ 108 (507)
-++|++|.+++..++.+ ++++++|||+|||+++++++.. ..+++|||+|+++|+.|+.+.++.+ ++ ++..+
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~ 92 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVF 92 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 46899999999988887 8999999999999998877653 3689999999999999999999884 55 56666
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHH-HHH
Q 010563 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL-SSL 187 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l-~~l 187 (507)
++......+...+. ..+++++||+.+... .+........+++|||||||++.... .|..+ ..+
T Consensus 93 ~g~~~~~~r~~~~~-------~~~iiv~T~~~l~~~----l~~~~~~~~~~~liVvDEaH~~~~~~-----~~~~i~~~~ 156 (773)
T PRK13766 93 TGEVSPEKRAELWE-------KAKVIVATPQVIEND----LIAGRISLEDVSLLIFDEAHRAVGNY-----AYVYIAERY 156 (773)
T ss_pred eCCCCHHHHHHHHh-------CCCEEEECHHHHHHH----HHcCCCChhhCcEEEEECCccccccc-----cHHHHHHHH
Confidence 66666555444432 257889998876432 12233344568999999999986421 12222 233
Q ss_pred HHhCCCCCEEEEeecCChh--hHHHHHHHhCCCCCeEEe-------ccCCCCceEEEEE---------------------
Q 010563 188 RNYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLK-------SSFNRPNLFYEVR--------------------- 237 (507)
Q Consensus 188 ~~~~~~~~~i~lSAT~~~~--~~~~i~~~l~~~~~~~~~-------~~~~~~ni~~~v~--------------------- 237 (507)
+...+...+++||||+... ....+.+.|++....+.. .....+.+.+...
T Consensus 157 ~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l 236 (773)
T PRK13766 157 HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRL 236 (773)
T ss_pred HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHH
Confidence 4444456699999998532 233344444432111000 0000000000000
Q ss_pred ---------------------------------e----------------------------------------------
Q 010563 238 ---------------------------------Y---------------------------------------------- 238 (507)
Q Consensus 238 ---------------------------------~---------------------------------------------- 238 (507)
.
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~ 316 (773)
T PRK13766 237 KKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARS 316 (773)
T ss_pred HHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccc
Confidence 0
Q ss_pred -------------------------ecchhhHHHHHHHHHHh----cCCccEEEEeccchhHHHHHHHHHhCCCceeEec
Q 010563 239 -------------------------KDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289 (507)
Q Consensus 239 -------------------------~~~~~~~~~~l~~~l~~----~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h 289 (507)
......|++.|.++++. .++.++||||+++++|+.+++.|...|+.+..+|
T Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~ 396 (773)
T PRK13766 317 SGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFV 396 (773)
T ss_pred cCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEE
Confidence 00001133334444433 4667899999999999999999999999999998
Q ss_pred CC--------CCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEE
Q 010563 290 AG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (507)
Q Consensus 290 ~~--------l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~ 361 (507)
|. |++.+|..++++|++|+.+|||||+++++|+|+|++++||+|++|.|+..|+||+||+||.|. |.++++
T Consensus 397 g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l 475 (773)
T PRK13766 397 GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVL 475 (773)
T ss_pred ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEE
Confidence 86 999999999999999999999999999999999999999999999999999999999999874 777777
Q ss_pred eccchH
Q 010563 362 YGMDDR 367 (507)
Q Consensus 362 ~~~~d~ 367 (507)
+..+..
T Consensus 476 ~~~~t~ 481 (773)
T PRK13766 476 IAKGTR 481 (773)
T ss_pred EeCCCh
Confidence 765443
No 68
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.8e-33 Score=303.13 Aligned_cols=298 Identities=19% Similarity=0.218 Sum_probs=209.4
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---CCeEEEecChHHHHHHHHHHHHH-cCCc----eEEecCCCCHH
Q 010563 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLSSTQTMQ 115 (507)
Q Consensus 44 ~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~---~~~~lvi~P~~~L~~q~~~~l~~-~gi~----~~~~~~~~~~~ 115 (507)
.+.+.++.+++++++.||||+|||++|.++++.. .++++|+.|+++++.|..+++.+ +|.. +.+...+..
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~-- 88 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES-- 88 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc--
Confidence 3566777788999999999999999999998864 46899999999999999998854 4432 332221110
Q ss_pred HHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCC
Q 010563 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDV 194 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~ 194 (507)
......+|+|+||.++. ..+........+++|||||+|..+- ..|+. +.-+..+... .++.
T Consensus 89 ----------~~~~~t~I~v~T~G~Ll-----r~l~~d~~L~~v~~IIlDEaHER~l-~~Dl~--L~ll~~i~~~lr~~l 150 (812)
T PRK11664 89 ----------KVGPNTRLEVVTEGILT-----RMIQRDPELSGVGLVILDEFHERSL-QADLA--LALLLDVQQGLRDDL 150 (812)
T ss_pred ----------ccCCCCcEEEEChhHHH-----HHHhhCCCcCcCcEEEEcCCCcccc-ccchH--HHHHHHHHHhCCccc
Confidence 01123567777776542 2333344567799999999998421 11221 1122233333 3578
Q ss_pred CEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHH-----HHHHHHHHhcCCccEEEEeccch
Q 010563 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAY-----ADLCSVLKANGDTCAIVYCLERT 269 (507)
Q Consensus 195 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~-----~~l~~~l~~~~~~~~IVf~~s~~ 269 (507)
++++||||++..... +.+ .++.++...-..-.+...+..... .+++ ..+...+.. ..+.+|||+++++
T Consensus 151 qlilmSATl~~~~l~---~~~--~~~~~I~~~gr~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ 223 (812)
T PRK11664 151 KLLIMSATLDNDRLQ---QLL--PDAPVIVSEGRSFPVERRYQPLPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPGVG 223 (812)
T ss_pred eEEEEecCCCHHHHH---Hhc--CCCCEEEecCccccceEEeccCch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHH
Confidence 999999999876432 333 233333221111112111111111 1122 234444443 3568999999999
Q ss_pred hHHHHHHHHHh---CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCC---------
Q 010563 270 TCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK--------- 337 (507)
Q Consensus 270 ~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~--------- 337 (507)
+++.+++.|++ .++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++||++++++
T Consensus 224 ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g 303 (812)
T PRK11664 224 EIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTG 303 (812)
T ss_pred HHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCC
Confidence 99999999987 578899999999999999999999999999999999999999999999999988875
Q ss_pred ---------CHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 010563 338 ---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (507)
Q Consensus 338 ---------s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~ 369 (507)
|.++|.||+|||||. .+|.|+.+|+..+...
T Consensus 304 ~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~ 343 (812)
T PRK11664 304 LTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAER 343 (812)
T ss_pred cceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhh
Confidence 346899999999999 5999999999876653
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=2.4e-32 Score=289.73 Aligned_cols=327 Identities=17% Similarity=0.151 Sum_probs=230.2
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH---
Q 010563 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (507)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~--- 100 (507)
.++.++.+| ++|+|.+++..+..++..++.|+||+|||++|.+|++. .+..++||+|++.|+.|+.+.+..
T Consensus 60 rEa~~R~lg---lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 60 READKRVLG---MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred HHHHHhhcC---CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 345555666 57777777777776666899999999999999999864 456799999999999999988844
Q ss_pred -cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh---hhccCCccEEEEeccccccccC--
Q 010563 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISSWG-- 174 (507)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~---~~~~~~l~~iViDEaH~i~~~g-- 174 (507)
+|+.+.....+.............. ...+|+|+||..+....+...+.. ......+.++||||||.++-..
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~---y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDear 213 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKI---YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQ 213 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHh---CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCc
Confidence 6888877654421111100001111 137899999998865544443321 1224568999999999984211
Q ss_pred -------C--CCHHHHHHHHHHHHhCC-----------------------------------------------------
Q 010563 175 -------H--DFRPSYRKLSSLRNYLP----------------------------------------------------- 192 (507)
Q Consensus 175 -------~--~fr~~~~~l~~l~~~~~----------------------------------------------------- 192 (507)
. .-...|.....+...+.
T Consensus 214 tpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~ 293 (762)
T TIGR03714 214 TPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHY 293 (762)
T ss_pred CCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHH
Confidence 0 00111111111111000
Q ss_pred -----------------------------------------------------------------CCCEEEEeecCChhh
Q 010563 193 -----------------------------------------------------------------DVPILALTATAAPKV 207 (507)
Q Consensus 193 -----------------------------------------------------------------~~~~i~lSAT~~~~~ 207 (507)
-.++.+||+|+...
T Consensus 294 ~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~- 372 (762)
T TIGR03714 294 LFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVA- 372 (762)
T ss_pred HHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhH-
Confidence 01366777776443
Q ss_pred HHHHHHHhCCCCCeEEeccCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCC
Q 010563 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (507)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g 282 (507)
..++.+..++ .++..+.++|.+.... .+.. ..+++..+.+.++. ..+.++||||+|++.++.++..|.+.|
T Consensus 373 ~~Ef~~iY~l---~v~~IPt~kp~~r~d~~d~i~~~-~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~g 448 (762)
T TIGR03714 373 EKEFIETYSL---SVVKIPTNKPIIRIDYPDKIYAT-LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREG 448 (762)
T ss_pred HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEEC-HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCC
Confidence 3344444433 3555666666665432 2222 24677777777755 456789999999999999999999999
Q ss_pred CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCC---------CccEEEEeCCCCCHHHHHHHhcccCCCC
Q 010563 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---------DVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (507)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p---------~v~~VI~~~~p~s~~~y~Q~~GRagR~g 353 (507)
+++..+||++++.++..+..+++.| .|+|||+++|+|+|++ ++.+|+++++|..... .||+||+||.|
T Consensus 449 i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG 525 (762)
T TIGR03714 449 IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG 525 (762)
T ss_pred CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC
Confidence 9999999999999988887777666 6999999999999999 9999999999988777 99999999999
Q ss_pred CCceEEEEeccchH
Q 010563 354 LPSKSLLYYGMDDR 367 (507)
Q Consensus 354 ~~~~~i~~~~~~d~ 367 (507)
.+|.++.|++.+|.
T Consensus 526 ~~G~s~~~is~eD~ 539 (762)
T TIGR03714 526 DPGSSQFFVSLEDD 539 (762)
T ss_pred CceeEEEEEccchh
Confidence 99999999998764
No 70
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.6e-32 Score=293.77 Aligned_cols=325 Identities=21% Similarity=0.193 Sum_probs=237.7
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH--
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~-- 100 (507)
+.++.++.+|.. +++.|..++..+..|+ ++.|.||+|||++|.+|++. .+..++|++|+..|+.|..+.+..
T Consensus 67 vrea~~R~~g~~-p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 67 VREAAKRVLGMR-PYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHHHHhCCC-CchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 445667778874 8899988888888776 99999999999999999973 577899999999999998888766
Q ss_pred --cCCceEEecCCCC-HHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH---hhhccCCccEEEEecccccccc-
Q 010563 101 --KGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW- 173 (507)
Q Consensus 101 --~gi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~~- 173 (507)
+|+.+..+.++.+ ...+...+ ..+|+|+||..++-..+...+. .......+.++||||||.++=.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y--------~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDe 215 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIY--------EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDE 215 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhc--------CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceecc
Confidence 6899999988877 55544322 2789999998775432222221 1123455899999999998410
Q ss_pred --------C--CCCHHHHHHHHHHHHhC----------------------------------------------------
Q 010563 174 --------G--HDFRPSYRKLSSLRNYL---------------------------------------------------- 191 (507)
Q Consensus 174 --------g--~~fr~~~~~l~~l~~~~---------------------------------------------------- 191 (507)
| ..-...|.....+...+
T Consensus 216 a~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 295 (790)
T PRK09200 216 AQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRA 295 (790)
T ss_pred CCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHH
Confidence 0 00001111111111100
Q ss_pred --------------------------------------------------C----------------CCCEEEEeecCCh
Q 010563 192 --------------------------------------------------P----------------DVPILALTATAAP 205 (507)
Q Consensus 192 --------------------------------------------------~----------------~~~~i~lSAT~~~ 205 (507)
+ -..+.+||+|+..
T Consensus 296 ~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t 375 (790)
T PRK09200 296 HVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKT 375 (790)
T ss_pred HHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChH
Confidence 0 0036677777644
Q ss_pred hhHHHHHHHhCCCCCeEEeccCCCCceEEEEE--eecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhC
Q 010563 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (507)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~--~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~ 281 (507)
.. ..+.+..++ .++..+.++|.+..... ......++...|.+.+.. ..+.++||||+|++.++.++..|.+.
T Consensus 376 ~~-~e~~~~Y~l---~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 376 EE-KEFFEVYNM---EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HH-HHHHHHhCC---cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 32 344444443 34455666666553221 111225677777777754 35678999999999999999999999
Q ss_pred CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccC---CCcc-----EEEEeCCCCCHHHHHHHhcccCCCC
Q 010563 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR---KDVR-----LVCHFNIPKSMEAFYQESGRAGRDQ 353 (507)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~---p~v~-----~VI~~~~p~s~~~y~Q~~GRagR~g 353 (507)
|+++..+||++...++..+...+..| .|+|||+++|+|+|+ |+|. +||++++|.|...|.||+||+||.|
T Consensus 452 gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G 529 (790)
T PRK09200 452 GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG 529 (790)
T ss_pred CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC
Confidence 99999999999998888888887766 799999999999999 6999 9999999999999999999999999
Q ss_pred CCceEEEEeccchH
Q 010563 354 LPSKSLLYYGMDDR 367 (507)
Q Consensus 354 ~~~~~i~~~~~~d~ 367 (507)
.+|.++.|++..|.
T Consensus 530 ~~G~s~~~is~eD~ 543 (790)
T PRK09200 530 DPGSSQFFISLEDD 543 (790)
T ss_pred CCeeEEEEEcchHH
Confidence 99999999997764
No 71
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=294.59 Aligned_cols=320 Identities=20% Similarity=0.251 Sum_probs=229.9
Q ss_pred CChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhc---C-CCeEEEecChHHHHHHH
Q 010563 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA---K-PGIVLVVSPLIALMENQ 94 (507)
Q Consensus 20 ~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~-g~d~lv~apTG~GKTl~~~lp~l~---~-~~~~lvi~P~~~L~~q~ 94 (507)
..+.+.+...++. .|+..+.+.|+.++...+. ++|+++++|||+|||+++++.++. + ++++|+|+|+++|+++.
T Consensus 14 ~~~~~~v~~i~~~-~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek 92 (766)
T COG1204 14 VKLDDRVLEILKG-DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEK 92 (766)
T ss_pred ccccHHHHHHhcc-CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHH
Confidence 4467778888877 6998899988888877654 599999999999999999888764 2 57999999999999999
Q ss_pred HHHHH---HcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccC--hhhHHHHHhhhccCCccEEEEecccc
Q 010563 95 VIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT--PGFMSKLKKIHSRGLLNLVAIDEAHC 169 (507)
Q Consensus 95 ~~~l~---~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t--~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (507)
+++++ .+|+++....+....... .+ ..++|+++|||.+-. ..+-. -...+++|||||+|.
T Consensus 93 ~~~~~~~~~~GirV~~~TgD~~~~~~-----~l----~~~~ViVtT~EK~Dsl~R~~~~------~~~~V~lvViDEiH~ 157 (766)
T COG1204 93 YEEFSRLEELGIRVGISTGDYDLDDE-----RL----ARYDVIVTTPEKLDSLTRKRPS------WIEEVDLVVIDEIHL 157 (766)
T ss_pred HHHhhhHHhcCCEEEEecCCcccchh-----hh----ccCCEEEEchHHhhHhhhcCcc------hhhcccEEEEeeeee
Confidence 99998 689999998877653221 11 248899999997753 11111 123489999999999
Q ss_pred cccc--CCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCe-EEec-cCCCCce-EEEEEeec----
Q 010563 170 ISSW--GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKS-SFNRPNL-FYEVRYKD---- 240 (507)
Q Consensus 170 i~~~--g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~-~~~~-~~~~~ni-~~~v~~~~---- 240 (507)
+.+. |.-.. .-+...+...+.+++++||||.++. .++..+++-.... .+.. +..++-. ...+....
T Consensus 158 l~d~~RG~~lE---~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k 232 (766)
T COG1204 158 LGDRTRGPVLE---SIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK 232 (766)
T ss_pred cCCcccCceeh---hHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc
Confidence 9763 32111 2344555566678999999999976 5678888765331 1111 1111111 11111111
Q ss_pred -----chhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC---------------------C------------
Q 010563 241 -----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------G------------ 282 (507)
Q Consensus 241 -----~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~---------------------g------------ 282 (507)
.....+..+.+.++ .++++||||+|++.+...|..|... +
T Consensus 233 ~~~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~ 310 (766)
T COG1204 233 TWPLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELA 310 (766)
T ss_pred cccccchHHHHHHHHHHHh--cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHH
Confidence 01112222233223 4568999999999999999999730 0
Q ss_pred ----CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEE----EeC-----CCCCHHHHHHHhccc
Q 010563 283 ----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFN-----IPKSMEAFYQESGRA 349 (507)
Q Consensus 283 ----~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI----~~~-----~p~s~~~y~Q~~GRa 349 (507)
..++++|+||+.++|..+.+.|+.|.++|||||+.++.|+|+|.-++|| .|+ .+-+..+|+|+.|||
T Consensus 311 e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRA 390 (766)
T COG1204 311 ELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRA 390 (766)
T ss_pred HHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcC
Confidence 1357899999999999999999999999999999999999999666665 455 456899999999999
Q ss_pred CCCCC--CceEEEEe
Q 010563 350 GRDQL--PSKSLLYY 362 (507)
Q Consensus 350 gR~g~--~~~~i~~~ 362 (507)
||.|- .|.++++.
T Consensus 391 GRPg~d~~G~~~i~~ 405 (766)
T COG1204 391 GRPGYDDYGEAIILA 405 (766)
T ss_pred CCCCcCCCCcEEEEe
Confidence 99885 44555554
No 72
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.1e-32 Score=286.20 Aligned_cols=301 Identities=18% Similarity=0.176 Sum_probs=206.8
Q ss_pred CCcHHHHHHHHHHHc-C--CCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHc-CCce---EEecC
Q 010563 38 QFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK-GIAG---EFLSS 110 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~-g--~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~-gi~~---~~~~~ 110 (507)
.+||+|++++.++.. | +..++++|||+|||++.+..+......+|||||+..|+.||.+++.++ .+.. ..+.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 589999999999884 3 368999999999999987766666778999999999999999999986 3322 22222
Q ss_pred CCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhH----HHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 010563 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (507)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~----~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (507)
.. +.. . .....|+++|+.++...... ...........+++||+||||.+.. +.|+ .
T Consensus 335 ~~----k~~----~---~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA------~~fr---~ 394 (732)
T TIGR00603 335 DA----KER----F---HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA------AMFR---R 394 (732)
T ss_pred Cc----ccc----c---ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH------HHHH---H
Confidence 11 000 0 01256888898877542111 1112222334589999999999854 2222 2
Q ss_pred HHHhCCCCCEEEEeecCChhhHH--HHHHHhCCCCCeEEeccC-------CCCceEE-EEEee-----------------
Q 010563 187 LRNYLPDVPILALTATAAPKVQK--DVMESLCLQNPLVLKSSF-------NRPNLFY-EVRYK----------------- 239 (507)
Q Consensus 187 l~~~~~~~~~i~lSAT~~~~~~~--~i~~~l~~~~~~~~~~~~-------~~~ni~~-~v~~~----------------- 239 (507)
+...+.....++||||+...... ++... -.|.++..+. ...+..+ .+...
T Consensus 395 il~~l~a~~RLGLTATP~ReD~~~~~L~~L---iGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 395 VLTIVQAHCKLGLTATLVREDDKITDLNFL---IGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHhcCcCcEEEEeecCcccCCchhhhhhh---cCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 33344556689999999754321 22221 2344433211 0111111 11110
Q ss_pred ----cchhhHHHHHHHHHHhc--CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcC-CceEE
Q 010563 240 ----DLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVV 312 (507)
Q Consensus 240 ----~~~~~~~~~l~~~l~~~--~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VL 312 (507)
...+.++..+..+++.+ .+.++||||.+...++.++..|. +..+||+++..+|..++++|++| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 01123445555555543 56789999999999999988872 46689999999999999999965 88999
Q ss_pred EEeCcccccccCCCccEEEEeCCC-CCHHHHHHHhcccCCCCCCceE-------EEEeccch
Q 010563 313 VATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKS-------LLYYGMDD 366 (507)
Q Consensus 313 VaT~a~~~GiD~p~v~~VI~~~~p-~s~~~y~Q~~GRagR~g~~~~~-------i~~~~~~d 366 (507)
|+|+++++|||+|++++||+++.| .|...|+||+||++|.+..+.+ +.+++.+.
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 999999999999999999999987 5999999999999998866553 55555554
No 73
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=3.1e-31 Score=286.72 Aligned_cols=313 Identities=19% Similarity=0.210 Sum_probs=232.3
Q ss_pred CCcHHHHHHHHHHHcC---CCEEEEcCCCchHHHHHHHHH---hcCCCeEEEecChHHHHHHHHHHHHH-cCCceEEecC
Q 010563 38 QFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g---~d~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~~ 110 (507)
.+++.|+++++.+.++ +++++.||||+|||.+|+.++ +..+..+||++|+++|+.|+.+.+++ +|..+..+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999874 789999999999999998765 45677999999999999999999987 7899999999
Q ss_pred CCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH--HHHHHHH
Q 010563 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLR 188 (507)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~ 188 (507)
+.+..++...+..+..+. .+++++|+..+.. ...++++|||||+|..+-++.+ .|.| +.+..++
T Consensus 224 ~~s~~~r~~~~~~~~~g~--~~IVVgTrsal~~-----------p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~r 289 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGE--AKVVIGARSALFL-----------PFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVR 289 (679)
T ss_pred CCCHHHHHHHHHHHHcCC--CCEEEeccHHhcc-----------cccCCCEEEEECCCccccccCc-CCCCcHHHHHHHH
Confidence 999888888888777764 7899998865432 2456899999999998876543 4433 6677777
Q ss_pred HhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccC---CCCceEEEEEee--------cchhhHHHHHHHHHHhcC
Q 010563 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYK--------DLLDDAYADLCSVLKANG 257 (507)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~ni~~~v~~~--------~~~~~~~~~l~~~l~~~~ 257 (507)
....+.+++++|||++.+....+.. +..........+ ..|.+...-... ......++.+.+.++ .
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--R 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--c
Confidence 7788999999999998777654422 111111111111 122222111000 011223333444333 2
Q ss_pred CccEEEEeccc------------------------------------------------------------hhHHHHHHH
Q 010563 258 DTCAIVYCLER------------------------------------------------------------TTCDELSAY 277 (507)
Q Consensus 258 ~~~~IVf~~s~------------------------------------------------------------~~~~~l~~~ 277 (507)
++++|||+|.+ ..++++++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 44688887642 245788899
Q ss_pred HHhC--CCceeEecCCCC--HHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCC------------CHHH
Q 010563 278 LSAG--GISCAAYHAGLN--DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEA 341 (507)
Q Consensus 278 L~~~--g~~~~~~h~~l~--~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~------------s~~~ 341 (507)
|++. +.++..+|+++. .++++.++++|.+|+.+|||+|++++.|+|+|+|.+|+.++... ....
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 9886 788999999986 46789999999999999999999999999999999997665442 2367
Q ss_pred HHHHhcccCCCCCCceEEEEeccchHH
Q 010563 342 FYQESGRAGRDQLPSKSLLYYGMDDRR 368 (507)
Q Consensus 342 y~Q~~GRagR~g~~~~~i~~~~~~d~~ 368 (507)
|.|++||+||.+..|.+++.....+..
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~ 552 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHP 552 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCH
Confidence 999999999999999999775544433
No 74
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.5e-31 Score=301.32 Aligned_cols=293 Identities=18% Similarity=0.270 Sum_probs=204.6
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh----cCCCeEEEecChHHHHHHHHHHHH
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLK 99 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l----~~~~~~lvi~P~~~L~~q~~~~l~ 99 (507)
+++.+.+.+..|+ .|+++|..+++.++.|+|++++||||+|||+ |.+|+. ..+.+++||+||++|+.|+.+.++
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 4455566665565 5999999999999999999999999999997 555543 246789999999999999999988
Q ss_pred Hc----CCceE---EecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 010563 100 EK----GIAGE---FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (507)
Q Consensus 100 ~~----gi~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (507)
.+ |+... .++++.+...+......+..+. .+|+++||..+.. .+.... . .++++||||||++++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~--~dIlV~Tp~rL~~-----~~~~l~-~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD--FDILITTTMFLSK-----NYDELG-P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHHH-----HHHHhc-C-CCCEEEEeChHhhhh
Confidence 75 34433 3567777776666666666553 6788777765421 122211 1 699999999999998
Q ss_pred cC---------CCCHHH-HHHH-------------------HHHHHhCC-CCC--EEEEeecCCh-hhHHHHHHHhCCCC
Q 010563 173 WG---------HDFRPS-YRKL-------------------SSLRNYLP-DVP--ILALTATAAP-KVQKDVMESLCLQN 219 (507)
Q Consensus 173 ~g---------~~fr~~-~~~l-------------------~~l~~~~~-~~~--~i~lSAT~~~-~~~~~i~~~l~~~~ 219 (507)
++ ..|.++ ...+ ..+....| +.+ ++++|||..+ .+...+...+ ..
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l--l~ 291 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL--LG 291 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccc--cc
Confidence 64 236653 2221 11222333 333 5678999544 3332222111 01
Q ss_pred CeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccc---hhHHHHHHHHHhCCCceeEecCCCCHHH
Q 010563 220 PLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER---TTCDELSAYLSAGGISCAAYHAGLNDKA 296 (507)
Q Consensus 220 ~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~---~~~~~l~~~L~~~g~~~~~~h~~l~~~~ 296 (507)
..+-.......|+........ .+...|.++++..+ ..+||||+++ +.|+++++.|++.|+++..+||+++.
T Consensus 292 ~~v~~~~~~~r~I~~~~~~~~---~~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 292 FEVGGGSDTLRNVVDVYVEDE---DLKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred eEecCccccccceEEEEEecc---cHHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 111111222344443333222 12345667776654 5699999999 99999999999999999999999973
Q ss_pred HHHHHHHHhcCCceEEEEe----CcccccccCCC-ccEEEEeCCCC
Q 010563 297 RSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK 337 (507)
Q Consensus 297 R~~~~~~f~~g~~~VLVaT----~a~~~GiD~p~-v~~VI~~~~p~ 337 (507)
.++++|++|+++||||| +++++|||+|+ |++|||||+|+
T Consensus 366 --~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred --HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 68999999999999994 89999999999 89999999996
No 75
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.1e-30 Score=275.34 Aligned_cols=325 Identities=20% Similarity=0.199 Sum_probs=234.8
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH--
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~-- 100 (507)
+.++.++.+|.. +++.|..+...+..|+ ++.|+||+|||++|.+|++. .+..+.|++|+..|+.|..+.+..
T Consensus 45 vrEa~~R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 45 VREASKRVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHHHHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 445667778876 6788888877777776 99999999999999999852 456799999999999999888776
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH---HhhhccCCccEEEEeccccccc---
Q 010563 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS--- 172 (507)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~~--- 172 (507)
+|+.+..+.++.....+...+ ..+|+|+||-.+.-......+ ........++++||||+|.++-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--------~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDea 193 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--------ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEA 193 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhh
Confidence 589999998887765544333 268999999866433222221 1123456689999999999843
Q ss_pred ------cCC--CCHHHHHHHHHHHHhC-----------------------------------------------------
Q 010563 173 ------WGH--DFRPSYRKLSSLRNYL----------------------------------------------------- 191 (507)
Q Consensus 173 ------~g~--~fr~~~~~l~~l~~~~----------------------------------------------------- 191 (507)
-|. .-...|.....+...+
T Consensus 194 RtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~ 273 (745)
T TIGR00963 194 RTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAK 273 (745)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHH
Confidence 010 0000111111100000
Q ss_pred -------------------------------------------------C----------------CCCEEEEeecCChh
Q 010563 192 -------------------------------------------------P----------------DVPILALTATAAPK 206 (507)
Q Consensus 192 -------------------------------------------------~----------------~~~~i~lSAT~~~~ 206 (507)
+ -..+.+||+|+...
T Consensus 274 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 353 (745)
T TIGR00963 274 ELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTE 353 (745)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHH
Confidence 0 01356677776543
Q ss_pred hHHHHHHHhCCCCCeEEeccCCCCceEEEE---EeecchhhHHHHHHHHHH--hcCCccEEEEeccchhHHHHHHHHHhC
Q 010563 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLK--ANGDTCAIVYCLERTTCDELSAYLSAG 281 (507)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v---~~~~~~~~~~~~l~~~l~--~~~~~~~IVf~~s~~~~~~l~~~L~~~ 281 (507)
...+.+..++ .++..+.++|.+.... .+.+ ..+++..+.+.+. ...+.++||||+|++.++.++..|.+.
T Consensus 354 -~~E~~~iY~l---~vv~IPtnkp~~R~d~~d~i~~t-~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~ 428 (745)
T TIGR00963 354 -EEEFEKIYNL---EVVVVPTNRPVIRKDLSDLVYKT-EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER 428 (745)
T ss_pred -HHHHHHHhCC---CEEEeCCCCCeeeeeCCCeEEcC-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 2334444433 2444556666554332 1222 2456666665552 235779999999999999999999999
Q ss_pred CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCC-------ccEEEEeCCCCCHHHHHHHhcccCCCCC
Q 010563 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------VRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (507)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~-------v~~VI~~~~p~s~~~y~Q~~GRagR~g~ 354 (507)
|++...+||+ +.+|+..+..|..+...|+|||+++|+|+|++. .-+||++++|.|...|.|+.||+||.|.
T Consensus 429 gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 429 GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGD 506 (745)
T ss_pred CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCC
Confidence 9999999998 788999999999999999999999999999998 4499999999999999999999999999
Q ss_pred CceEEEEeccchHH
Q 010563 355 PSKSLLYYGMDDRR 368 (507)
Q Consensus 355 ~~~~i~~~~~~d~~ 368 (507)
+|.+..|++..|.-
T Consensus 507 ~G~s~~~ls~eD~l 520 (745)
T TIGR00963 507 PGSSRFFLSLEDNL 520 (745)
T ss_pred CcceEEEEeccHHH
Confidence 99999999988743
No 76
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.7e-30 Score=283.20 Aligned_cols=315 Identities=17% Similarity=0.171 Sum_probs=220.7
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHh---cC--CCeEEEecChHHHHHHHHHHHH-HcCCceEEec
Q 010563 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL---AK--PGIVLVVSPLIALMENQVIGLK-EKGIAGEFLS 109 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~~lp~l---~~--~~~~lvi~P~~~L~~q~~~~l~-~~gi~~~~~~ 109 (507)
.|.|+|..++..++.. ..+++.-.+|.|||+-..+.+- .. ..++|||||. +|..||..++. +|++....+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 5889999998887654 3688889999999976654432 22 3589999998 89999999885 5888877766
Q ss_pred CCCCHHHHHHHHHHhhcCCCcccEEEECcccccC-hhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 010563 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (507)
........ ..-.......+++++|.+.+.. +.....+.. ..++++||||||++..-...-...|..+..+.
T Consensus 231 ~~~~~~~~----~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~----~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 231 EERYAEAQ----HDADNPFETEQLVICSLDFLRRNKQRLEQALA----AEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred Ccchhhhc----ccccCccccCcEEEEEHHHhhhCHHHHHHHhh----cCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 54322111 0000111236788888887765 333333332 34899999999998621111223477776665
Q ss_pred HhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec--cC---------------------------------------
Q 010563 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SF--------------------------------------- 227 (507)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~--------------------------------------- 227 (507)
... ..+++|||||...-..+++..+.+-+|..+.. .|
T Consensus 303 ~~~--~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 303 EVI--PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred hcc--CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 543 35899999987543333333333333322210 00
Q ss_pred ---------------------------------------------CCCceEEEEEeec----------------------
Q 010563 228 ---------------------------------------------NRPNLFYEVRYKD---------------------- 240 (507)
Q Consensus 228 ---------------------------------------------~~~ni~~~v~~~~---------------------- 240 (507)
.-|.-.+......
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 0000000000000
Q ss_pred ---------------chhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHH-hCCCceeEecCCCCHHHHHHHHHHH
Q 010563 241 ---------------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDW 304 (507)
Q Consensus 241 ---------------~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~-~~g~~~~~~h~~l~~~~R~~~~~~f 304 (507)
..+.+.+.|.++++.....++||||+++..+..+++.|+ ..|+.+..+||+|+..+|.++++.|
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 001244557777777777899999999999999999995 5699999999999999999999999
Q ss_pred hcC--CceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEec
Q 010563 305 ISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (507)
Q Consensus 305 ~~g--~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~ 363 (507)
+++ ..+|||||+++++|+|++.+++||+||+|++++.|.||+||+||.|+.+.+.+++.
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 974 59999999999999999999999999999999999999999999999988766654
No 77
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.1e-31 Score=276.16 Aligned_cols=286 Identities=20% Similarity=0.230 Sum_probs=213.0
Q ss_pred EEEcCCCchHHHHHHHHH---hcCCCeEEEecChHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHHhhcCCCccc
Q 010563 57 FCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (507)
Q Consensus 57 lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (507)
++.+|||+|||.+|+..+ +..++.+||++|+++|+.|+++.|++ +|..+..+++..+..++...+..+..+. .+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~--~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE--IL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC--CC
Confidence 468999999999986443 45677999999999999999999987 7888999999999988888888887764 77
Q ss_pred EEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH--HHHHHHHHhCCCCCEEEEeecCChhhHHH
Q 010563 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKD 210 (507)
Q Consensus 133 il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~~~~~~~~~i~lSAT~~~~~~~~ 210 (507)
|+++|+..+.. ...++++|||||+|..+-|+.++ |.| +.+..++....+.+++++|||++.+....
T Consensus 79 IVVGTrsalf~-----------p~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 79 VVIGTRSALFL-----------PFKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred EEECChHHHcC-----------cccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 88888765533 23458999999999999877654 444 56777888888999999999998776554
Q ss_pred HHHHhCCCCCeEEec-----cCCCCceEEEEEee-----cchhhHHHHHHHHHHhcCCccEEEEeccchh----------
Q 010563 211 VMESLCLQNPLVLKS-----SFNRPNLFYEVRYK-----DLLDDAYADLCSVLKANGDTCAIVYCLERTT---------- 270 (507)
Q Consensus 211 i~~~l~~~~~~~~~~-----~~~~~ni~~~v~~~-----~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~---------- 270 (507)
+.. + ....... ....|.+...-... ......++.+.+.++. ++++|||+|++--
T Consensus 147 ~~~--g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~--g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 147 AKQ--K--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA--GEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred Hhc--C--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc--CCcEEEEEeCCcCCCeeEhhhCc
Confidence 321 1 1111111 01122222211111 1112334444444443 4579999776532
Q ss_pred --------------------------------------------------HHHHHHHHHhC--CCceeEecCCCCHHHH-
Q 010563 271 --------------------------------------------------CDELSAYLSAG--GISCAAYHAGLNDKAR- 297 (507)
Q Consensus 271 --------------------------------------------------~~~l~~~L~~~--g~~~~~~h~~l~~~~R- 297 (507)
++++++.|++. +.++..+|++++...+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 58889999887 7889999999987665
Q ss_pred -HHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCC------------CHHHHHHHhcccCCCCCCceEEEEe
Q 010563 298 -SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSLLYY 362 (507)
Q Consensus 298 -~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~------------s~~~y~Q~~GRagR~g~~~~~i~~~ 362 (507)
+.+++.|.+|+.+|||+|++++.|+|+|+|.+|+.++... ....|.|.+||+||.+..|.+++..
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 8999999999999999999999999999999987554432 3578899999999999999988654
No 78
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.98 E-value=1e-29 Score=261.08 Aligned_cols=326 Identities=20% Similarity=0.259 Sum_probs=260.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHh---cCCCeEEEecC
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSP 86 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g------~d~lv~apTG~GKTl~~~lp~l---~~~~~~lvi~P 86 (507)
...+++...++...+...+.|+ |+..|+.++..|... -+=++++..|||||+++++.++ ..+..+...+|
T Consensus 241 ~~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAP 319 (677)
T COG1200 241 SGIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAP 319 (677)
T ss_pred cCCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEecc
Confidence 3445666666777776668987 999999999999754 1348999999999998877665 56889999999
Q ss_pred hHHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEE
Q 010563 87 LIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (507)
Q Consensus 87 ~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~i 162 (507)
|--|++|.++.+.+ +|+++..+.+....+.+..+...+.+|. ++++++|.-.+.- .....+++++
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~--~~ivVGTHALiQd---------~V~F~~LgLV 388 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE--IDIVVGTHALIQD---------KVEFHNLGLV 388 (677)
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC--CCEEEEcchhhhc---------ceeecceeEE
Confidence 99999999988776 6899999999999999999999999986 8888888765432 3344569999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhC-CCCCeEEeccCCCCceEEEEEeec
Q 010563 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLC-LQNPLVLKSSFNRPNLFYEVRYKD 240 (507)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~-~~~~~~~~~~~~~~ni~~~v~~~~ 240 (507)
||||=|++.- .+=..++.+-+ ...++.||||+-|.+.. ....+ +.-..+-..+..|..|.-.+....
T Consensus 389 IiDEQHRFGV---------~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~ 457 (677)
T COG1200 389 IIDEQHRFGV---------HQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHE 457 (677)
T ss_pred EEeccccccH---------HHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEeccc
Confidence 9999999543 22334566655 56799999999998776 33333 333444455677777776666666
Q ss_pred chhhHHHHHHHHHHhcCCccEEEEeccch--------hHHHHHHHHHhC--CCceeEecCCCCHHHHHHHHHHHhcCCce
Q 010563 241 LLDDAYADLCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (507)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IVf~~s~~--------~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (507)
..++.++.+..-+. .+.++.|.|+-++ .++.+++.|+.. +..+..+||.|+++++++++++|++|+++
T Consensus 458 ~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 458 RRPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred cHHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc
Confidence 55666776666665 3567899998665 445677777754 56799999999999999999999999999
Q ss_pred EEEEeCcccccccCCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCceEEEEeccch
Q 010563 311 VVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (507)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~i~~~~~~d 366 (507)
|||||.+.+.|||+|+..+.|..+.-. -+++.-|-.||+||.+..+.|+++|.+..
T Consensus 536 ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 536 ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999999999888653 68999999999999999999999998765
No 79
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.98 E-value=9.4e-31 Score=272.43 Aligned_cols=318 Identities=24% Similarity=0.354 Sum_probs=210.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEecChHHHHHHHHHHHHHcCCceEEe-
Q 010563 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFL- 108 (507)
Q Consensus 35 g~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~-----~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~- 108 (507)
+.-.+|++|.+.+..++ |++++|++|||+|||+++...++. ..+++|+++|++-|+.||...++.+|++....
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~ 137 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTG 137 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccccee
Confidence 34479999999999999 999999999999999988777763 36899999999999999998888888763222
Q ss_pred -cCC-CCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 010563 109 -SST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (507)
Q Consensus 109 -~~~-~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (507)
.++ .+...+..++. ..+++++||.++...-.-..... ++.+.++||||||+-.. .+.|-...+.+..
T Consensus 138 ~l~~~~~~~~r~~i~~-------s~~vff~TpQil~ndL~~~~~~~---ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~l~ 206 (746)
T KOG0354|consen 138 QLGDTVPRSNRGEIVA-------SKRVFFRTPQILENDLKSGLHDE---LSDFSLIVFDECHRTSK-NHPYNNIMREYLD 206 (746)
T ss_pred eccCccCCCchhhhhc-------ccceEEeChHhhhhhcccccccc---cceEEEEEEcccccccc-cccHHHHHHHHHH
Confidence 122 22222222221 36899999987765321111111 35589999999999764 3333333333322
Q ss_pred HHHhCCCCCEEEEeecCChhhHH--HHHHHhCCC----CCeEEecc----------------------------------
Q 010563 187 LRNYLPDVPILALTATAAPKVQK--DVMESLCLQ----NPLVLKSS---------------------------------- 226 (507)
Q Consensus 187 l~~~~~~~~~i~lSAT~~~~~~~--~i~~~l~~~----~~~~~~~~---------------------------------- 226 (507)
+... ..++++||||+...... .++..|... ....+..+
T Consensus 207 ~k~~--~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~ 284 (746)
T KOG0354|consen 207 LKNQ--GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQ 284 (746)
T ss_pred hhhc--cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHH
Confidence 2222 34999999999854221 111111110 00000000
Q ss_pred ---------CCCCceEEEE---------------------------------------Eeec------------------
Q 010563 227 ---------FNRPNLFYEV---------------------------------------RYKD------------------ 240 (507)
Q Consensus 227 ---------~~~~ni~~~v---------------------------------------~~~~------------------ 240 (507)
....+..|.. +..+
T Consensus 285 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~ 364 (746)
T KOG0354|consen 285 QLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYL 364 (746)
T ss_pred HHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHH
Confidence 0000000000 0000
Q ss_pred ---------------------------chhhHHHHHHHHH----HhcCCccEEEEeccchhHHHHHHHHHhC---CCcee
Q 010563 241 ---------------------------LLDDAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSAG---GISCA 286 (507)
Q Consensus 241 ---------------------------~~~~~~~~l~~~l----~~~~~~~~IVf~~s~~~~~~l~~~L~~~---g~~~~ 286 (507)
....+++.+.+++ ...+..++||||.+|+.|..|...|.+. |++..
T Consensus 365 ~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~ 444 (746)
T KOG0354|consen 365 KLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAE 444 (746)
T ss_pred HHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccc
Confidence 0001222233332 2234568999999999999999999832 33332
Q ss_pred --------EecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceE
Q 010563 287 --------AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (507)
Q Consensus 287 --------~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~ 358 (507)
....+|++++..+++++|++|+++|||||+++++|+|++.+++||-||...|+...+||.|| ||.- .|.|
T Consensus 445 ~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~ 522 (746)
T KOG0354|consen 445 IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKC 522 (746)
T ss_pred eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeE
Confidence 23358999999999999999999999999999999999999999999999999999999999 9975 6888
Q ss_pred EEEeccchHH
Q 010563 359 LLYYGMDDRR 368 (507)
Q Consensus 359 i~~~~~~d~~ 368 (507)
+++++..+..
T Consensus 523 vll~t~~~~~ 532 (746)
T KOG0354|consen 523 VLLTTGSEVI 532 (746)
T ss_pred EEEEcchhHH
Confidence 8888854433
No 80
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=4e-30 Score=270.47 Aligned_cols=336 Identities=20% Similarity=0.233 Sum_probs=239.5
Q ss_pred HHHHH-HHhcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhc-------------CCCeEEEecChHHH
Q 010563 26 LVKLL-RWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-------------KPGIVLVVSPLIAL 90 (507)
Q Consensus 26 l~~~l-~~~fg~~~~r~~Q~~~i~~i~~g-~d~lv~apTG~GKTl~~~lp~l~-------------~~~~~lvi~P~~~L 90 (507)
+.... +..|+|..|+.+|.++++.+... .++|++||||+|||-.|+|.+|. ...++|+|+|++||
T Consensus 97 ld~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKAL 176 (1230)
T KOG0952|consen 97 LDDVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKAL 176 (1230)
T ss_pred cchhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHH
Confidence 44444 47899999999999999998865 69999999999999999988873 24589999999999
Q ss_pred HHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccc--cChhhHHHHHhhhccCCccEEEE
Q 010563 91 MENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT--ATPGFMSKLKKIHSRGLLNLVAI 164 (507)
Q Consensus 91 ~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~--~t~~~~~~l~~~~~~~~l~~iVi 164 (507)
+.+.++.+.+ +|+.+.-+.+.+...... +. ..+++++|||.. .|...... ..-.+.+++|||
T Consensus 177 a~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i~--------~tqiiVTTPEKwDvvTRk~~~d---~~l~~~V~LviI 244 (1230)
T KOG0952|consen 177 AAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-IA--------DTQIIVTTPEKWDVVTRKSVGD---SALFSLVRLVII 244 (1230)
T ss_pred HHHHHHHHhhhcccccceEEEecCcchhhHHH-HH--------hcCEEEecccceeeeeeeeccc---hhhhhheeeEEe
Confidence 9998888765 588888888776543322 21 389999999954 33221111 111233899999
Q ss_pred eccccccc-cCCCCHHHHHHHHHHH-HhCCCCCEEEEeecCChhhHHHHHHHhCCCCCe---EEeccCCCCceEEEEE--
Q 010563 165 DEAHCISS-WGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPKVQKDVMESLCLQNPL---VLKSSFNRPNLFYEVR-- 237 (507)
Q Consensus 165 DEaH~i~~-~g~~fr~~~~~l~~l~-~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~---~~~~~~~~~ni~~~v~-- 237 (507)
||+|.+-+ .|.-......+...+. .....++++++|||+|.- .|+..+|+.+.+. .+...+..-.+...+.
T Consensus 245 DEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~ 322 (1230)
T KOG0952|consen 245 DEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGI 322 (1230)
T ss_pred eeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeeeEEee
Confidence 99999866 3433222223332222 233478999999999865 6788898886322 2222333222322222
Q ss_pred -ee-------cchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC----C-------------------Ccee
Q 010563 238 -YK-------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----G-------------------ISCA 286 (507)
Q Consensus 238 -~~-------~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~----g-------------------~~~~ 286 (507)
.+ ...+..++.+.++++. +.+++|||.++..+.+.|+.|.+. | ....
T Consensus 323 k~~~~~~~~~~~d~~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~ 400 (1230)
T KOG0952|consen 323 KGKKNRQQKKNIDEVCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMG 400 (1230)
T ss_pred ecccchhhhhhHHHHHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhh
Confidence 11 0112234555555554 458999999999999999998653 1 1357
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCC-----C------CHHHHHHHhcccCCCC--
Q 010563 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----K------SMEAFYQESGRAGRDQ-- 353 (507)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p-----~------s~~~y~Q~~GRagR~g-- 353 (507)
.+|+||...+|..+.+.|..|.++||+||..+++|+|+|+- .||..+-+ + +.-+.+|..|||||.+
T Consensus 401 iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~-aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 401 IHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAY-AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred hcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcce-EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 89999999999999999999999999999999999999965 44444332 2 5678899999999954
Q ss_pred CCceEEEEeccchHHHHHHHHHhcc
Q 010563 354 LPSKSLLYYGMDDRRRMEFILSKNQ 378 (507)
Q Consensus 354 ~~~~~i~~~~~~d~~~~~~~~~~~~ 378 (507)
..|.+++..+.+-...+..++....
T Consensus 480 ~~G~giIiTt~dkl~~Y~sLl~~~~ 504 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLDHYESLLTGQN 504 (1230)
T ss_pred CCceEEEEecccHHHHHHHHHcCCC
Confidence 5788888888887777777776543
No 81
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.2e-29 Score=262.19 Aligned_cols=301 Identities=20% Similarity=0.261 Sum_probs=208.8
Q ss_pred CCCCcHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCce---EEe
Q 010563 36 HAQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG---EFL 108 (507)
Q Consensus 36 ~~~~r~~Q~~~i~~i~~----g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~---~~~ 108 (507)
...+|++|++++.++.+ ++..++++|||+|||.+++..+-.....+|||+|+.+|+.||.+.+..+.... ..+
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~ 113 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIY 113 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCcccccee
Confidence 34599999999999998 88999999999999999888777767779999999999999998887753321 212
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 010563 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (507)
.++.. ...+ ..+.++|...+.... .+.. .....+++||+||||++.... |..+....
T Consensus 114 ~~~~~------------~~~~-~~i~vat~qtl~~~~---~l~~-~~~~~~~liI~DE~Hh~~a~~------~~~~~~~~ 170 (442)
T COG1061 114 GGGEK------------ELEP-AKVTVATVQTLARRQ---LLDE-FLGNEFGLIIFDEVHHLPAPS------YRRILELL 170 (442)
T ss_pred cCcee------------ccCC-CcEEEEEhHHHhhhh---hhhh-hcccccCEEEEEccccCCcHH------HHHHHHhh
Confidence 11110 0001 347777766665532 1111 222358999999999987622 34443333
Q ss_pred HhCCCCC-EEEEeecCChhhHHHHHHHhCCCCCeEEecc--------CCCCceEEEEEeecch-----------------
Q 010563 189 NYLPDVP-ILALTATAAPKVQKDVMESLCLQNPLVLKSS--------FNRPNLFYEVRYKDLL----------------- 242 (507)
Q Consensus 189 ~~~~~~~-~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--------~~~~ni~~~v~~~~~~----------------- 242 (507)
.... +++||||+.......+.....+..+.++..+ +-.|-.++.+......
T Consensus 171 ---~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 171 ---SAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred ---hcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 2333 9999999875442222222222224444322 1222222222211000
Q ss_pred -------------------hhHHHHHHHHHHhc-CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHH
Q 010563 243 -------------------DDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302 (507)
Q Consensus 243 -------------------~~~~~~l~~~l~~~-~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 302 (507)
+.+...+...+..+ .+.+++|||.+..+++.++..+...|+ +..+.+..+..+|..+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHH
Confidence 11122233333333 356899999999999999999998888 899999999999999999
Q ss_pred HHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCC-CCCCce-EEEEec
Q 010563 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSK-SLLYYG 363 (507)
Q Consensus 303 ~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR-~g~~~~-~i~~~~ 363 (507)
.|+.|++++||++.++..|+|+|++.++|......|...|+||+||.-| ...++. .+++|.
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~ 389 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYS 389 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEE
Confidence 9999999999999999999999999999999999999999999999999 443443 334443
No 82
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.2e-31 Score=239.99 Aligned_cols=297 Identities=17% Similarity=0.283 Sum_probs=217.0
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC----C--CeEEEecCh
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----P--GIVLVVSPL 87 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~----~--~~~lvi~P~ 87 (507)
+..|.++.+.+++.+++-. .||.+|...|.++|+...-|-|++++|..|.|||.+|.+..|+. . -.++|+|.|
T Consensus 41 ssgfrdfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmcht 119 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHT 119 (387)
T ss_pred ccchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEecc
Confidence 3458889999999999998 69999999999999999999999999999999999999998864 2 258999999
Q ss_pred HHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH--hhhccCCcc
Q 010563 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLN 160 (507)
Q Consensus 88 ~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~--~~~~~~~l~ 160 (507)
++|+-|......+| ++++..+.++...+...+.... . ..| +++||+++..|. +..+..++.
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~--Phi------vVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----C--PHI------VVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----C--CeE------EEcCcHHHHHHHHhccCchhhcc
Confidence 99999988776664 5677777777765554443332 2 223 566777766663 345567789
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEE-eccCCCCce----EE
Q 010563 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPNL----FY 234 (507)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~~~ni----~~ 234 (507)
.+|+|||+.++++- |.|.+ +..+.+.-| ..+++.+|||++.+.+.-..+. +.+|..+ ......-.+ .|
T Consensus 188 hFvlDEcdkmle~l-DMrRD---vQEifr~tp~~KQvmmfsatlskeiRpvC~kF--mQdPmEi~vDdE~KLtLHGLqQ~ 261 (387)
T KOG0329|consen 188 HFVLDECDKMLEQL-DMRRD---VQEIFRMTPHEKQVMMFSATLSKEIRPVCHKF--MQDPMEIFVDDEAKLTLHGLQQY 261 (387)
T ss_pred eeehhhHHHHHHHH-HHHHH---HHHHhhcCcccceeeeeeeecchhhHHHHHhh--hcCchhhhccchhhhhhhhHHHH
Confidence 99999999998864 35544 444444445 6889999999999876643333 3444322 111111000 11
Q ss_pred EEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEE
Q 010563 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (507)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (507)
.+..++ .++-..+.++|....-+.++||+.+... | + | +.+ +||
T Consensus 262 YvkLke--~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~va 304 (387)
T KOG0329|consen 262 YVKLKE--NEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVA 304 (387)
T ss_pred HHhhhh--hhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHH
Confidence 121121 2333445555555445679999877664 1 0 2 123 899
Q ss_pred eCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 010563 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (507)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d 366 (507)
|+.||+|+|+..|..|++||+|.+..+|+||+|||||.|..|.++.|.+..+
T Consensus 305 t~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 305 TDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred hhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 9999999999999999999999999999999999999999999999987653
No 83
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.1e-28 Score=264.45 Aligned_cols=323 Identities=20% Similarity=0.190 Sum_probs=261.8
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHc----CC--CEEEEcCCCchHHHHHHHHH---hcCCCeEEEecCh
Q 010563 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----GR--DCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (507)
Q Consensus 17 ~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~----g~--d~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~ 87 (507)
...++.+.+.+..+...|+|. -||-|..||+.+.+ ++ |=++|+..|.|||-+++-++ +..+..|.|++||
T Consensus 574 G~af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPT 652 (1139)
T COG1197 574 GFAFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPT 652 (1139)
T ss_pred CCCCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEccc
Confidence 345677788999999999998 59999999999874 33 77999999999998887554 5678899999999
Q ss_pred HHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEE
Q 010563 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (507)
Q Consensus 88 ~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iV 163 (507)
.-|++|..+.++. +++++..++.-.+.++...+...+..|. ++|+++|.-++.+ .....+++++|
T Consensus 653 TlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~--vDIvIGTHrLL~k---------dv~FkdLGLlI 721 (1139)
T COG1197 653 TLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK--VDIVIGTHRLLSK---------DVKFKDLGLLI 721 (1139)
T ss_pred HHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC--ccEEEechHhhCC---------CcEEecCCeEE
Confidence 9999999988876 6788999999999999999999999996 8999888866544 33455699999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec-cCCCCceEEEEEeecch
Q 010563 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLL 242 (507)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~ni~~~v~~~~~~ 242 (507)
|||-|+..- ..-..++....++-++.|||||-|.+.. +...|+++--++.. +.+|-.+.-.|...+.
T Consensus 722 IDEEqRFGV---------k~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~- 789 (1139)
T COG1197 722 IDEEQRFGV---------KHKEKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVSEYDD- 789 (1139)
T ss_pred EechhhcCc---------cHHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEecCCh-
Confidence 999999643 2223344444688999999999999888 77788887655554 4456555555554432
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC--CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccc
Q 010563 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (507)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~ 320 (507)
.-..+.+..-+. .++++-..+|..++.+++++.|++. ..+++.-||.|+..+-+.++..|.+|+++|||||...+.
T Consensus 790 ~~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEt 867 (1139)
T COG1197 790 LLIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIET 867 (1139)
T ss_pred HHHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeec
Confidence 112222332222 3556777789999999999999986 567889999999999999999999999999999999999
Q ss_pred cccCCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 321 GIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 321 GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
|||+|+++.+|..+... -+++.+|..||+||..+.++|+++|.+.
T Consensus 868 GIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 868 GIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999776654 6999999999999999999999999754
No 84
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=1.8e-29 Score=280.33 Aligned_cols=299 Identities=18% Similarity=0.222 Sum_probs=199.9
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-C-----CCeEEEecC----hHHHHHHHHHHHHH-cCCceEEecC
Q 010563 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-K-----PGIVLVVSP----LIALMENQVIGLKE-KGIAGEFLSS 110 (507)
Q Consensus 42 ~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~-~-----~~~~lvi~P----~~~L~~q~~~~l~~-~gi~~~~~~~ 110 (507)
.-.+++.++..++.+++.|+||||||. ++|.+. . .+.+++.-| +++|+.+..+.+.. +|-.+.+-..
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 344566666677778889999999998 788542 1 234445557 45788777777764 4433322110
Q ss_pred CCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc-ccccCCCCHHHHHHHHHHHH
Q 010563 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRN 189 (507)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~ 189 (507)
. ... .....+|+|+||.++.. .+........+++|||||||. ..+. ||... .|..+..
T Consensus 156 f---------~~~---~s~~t~I~v~TpG~LL~-----~l~~d~~Ls~~~~IIIDEAHERsLn~--DfLLg--~Lk~lL~ 214 (1294)
T PRK11131 156 F---------NDQ---VSDNTMVKLMTDGILLA-----EIQQDRLLMQYDTIIIDEAHERSLNI--DFILG--YLKELLP 214 (1294)
T ss_pred C---------ccc---cCCCCCEEEEChHHHHH-----HHhcCCccccCcEEEecCcccccccc--chHHH--HHHHhhh
Confidence 0 000 11246777777765532 223233356799999999995 5553 45532 3444555
Q ss_pred hCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCC-ceEEEEEeecc---hhhHHHHHHHHH---HhcCCccEE
Q 010563 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDL---LDDAYADLCSVL---KANGDTCAI 262 (507)
Q Consensus 190 ~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~-ni~~~v~~~~~---~~~~~~~l~~~l---~~~~~~~~I 262 (507)
..|+.++|++|||++.. .+.+.+ ...|.+...+...| .+.|....... ..+.+..+...+ .....+.+|
T Consensus 215 ~rpdlKvILmSATid~e---~fs~~F-~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdIL 290 (1294)
T PRK11131 215 RRPDLKVIITSATIDPE---RFSRHF-NNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDIL 290 (1294)
T ss_pred cCCCceEEEeeCCCCHH---HHHHHc-CCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 55788999999999764 333333 23444333322222 22222111110 112333333322 234557899
Q ss_pred EEeccchhHHHHHHHHHhCCCc---eeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCC----
Q 010563 263 VYCLERTTCDELSAYLSAGGIS---CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---- 335 (507)
Q Consensus 263 Vf~~s~~~~~~l~~~L~~~g~~---~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~---- 335 (507)
||++++++++.+++.|++.+++ +..+||+|++++|..+++. .|..+|||||+++++|||+|+|++||++++
T Consensus 291 VFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~ 368 (1294)
T PRK11131 291 IFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 (1294)
T ss_pred EEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccc
Confidence 9999999999999999988764 6789999999999999876 578899999999999999999999999863
Q ss_pred -----------C---CCHHHHHHHhcccCCCCCCceEEEEeccchHHHH
Q 010563 336 -----------P---KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (507)
Q Consensus 336 -----------p---~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~ 370 (507)
| .|.++|.||+|||||. .+|.|+.+|+..|...+
T Consensus 369 ~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~ 416 (1294)
T PRK11131 369 RYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSR 416 (1294)
T ss_pred ccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhh
Confidence 3 4678999999999999 59999999998876543
No 85
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=8.2e-28 Score=268.09 Aligned_cols=300 Identities=18% Similarity=0.212 Sum_probs=197.6
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEecChHHHHHHHHHHHHH-cCCceEEecCCCCHHH
Q 010563 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (507)
Q Consensus 44 ~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~ 116 (507)
.+.+.++..++.+++.|+||+|||. ++|.+. ..+.+++.-|.+--+...+.++.+ +|.+.....+.....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~- 149 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF- 149 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC-
Confidence 3566667677788999999999998 667543 134566677888777666666554 555432221110000
Q ss_pred HHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc-ccccCCCCHHHHHHHHHHHHhCCCCC
Q 010563 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVP 195 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~-i~~~g~~fr~~~~~l~~l~~~~~~~~ 195 (507)
.+ ....+.+|.|+||.++.. .+........+++|||||||. ..+. ||--. .+..+....|+.+
T Consensus 150 -----~~--~~s~~T~I~~~TdGiLLr-----~l~~d~~L~~~~~IIIDEaHERsL~~--D~LL~--lLk~il~~rpdLK 213 (1283)
T TIGR01967 150 -----HD--QVSSNTLVKLMTDGILLA-----ETQQDRFLSRYDTIIIDEAHERSLNI--DFLLG--YLKQLLPRRPDLK 213 (1283)
T ss_pred -----Cc--ccCCCceeeeccccHHHH-----HhhhCcccccCcEEEEcCcchhhccc--hhHHH--HHHHHHhhCCCCe
Confidence 00 011246777777765532 233333456799999999995 5442 23322 2445555667899
Q ss_pred EEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCC-ceEEEEEeecc---hhhHHHHHHHHHH---hcCCccEEEEeccc
Q 010563 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCAIVYCLER 268 (507)
Q Consensus 196 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~-ni~~~v~~~~~---~~~~~~~l~~~l~---~~~~~~~IVf~~s~ 268 (507)
+|+||||+... .+.+.++ ..|.+...+...| .+.|....... ..+..+.+...+. ....+.+|||+++.
T Consensus 214 lIlmSATld~~---~fa~~F~-~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 214 IIITSATIDPE---RFSRHFN-NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred EEEEeCCcCHH---HHHHHhc-CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 99999999754 3344432 3344333322211 22222111110 0122233333222 22456899999999
Q ss_pred hhHHHHHHHHHhCC---CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCC--------
Q 010563 269 TTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-------- 337 (507)
Q Consensus 269 ~~~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~-------- 337 (507)
.+++.+++.|.+.+ +.+..+||+|+.++|..+++.+ +..+|||||++++.|||+|+|++||++++++
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~ 367 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRT 367 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccccc
Confidence 99999999999864 4588999999999999886543 3469999999999999999999999999543
Q ss_pred ----------CHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 010563 338 ----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (507)
Q Consensus 338 ----------s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~ 369 (507)
|.++|.||+|||||.| +|.|+.+|+..+...
T Consensus 368 ~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 368 KVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred CccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 6789999999999998 999999999887654
No 86
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=6.6e-27 Score=249.03 Aligned_cols=325 Identities=20% Similarity=0.195 Sum_probs=233.4
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH--
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~-- 100 (507)
+.++.++.+|.. +++.|.-..-.+..|+ ++.|.||.|||++..+|++. .+..+-|++|+--|+.+..+.+..
T Consensus 69 vrEa~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 69 AREGAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHH
Confidence 456777788876 6788887766676776 89999999999999998864 577899999999999998887655
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc---
Q 010563 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (507)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~--- 172 (507)
+|+.+..+.+..+...+...+. .+|.|+|.--+.-..+...+. ...-...+.+.||||+|.++=
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~--------~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDea 217 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYN--------CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEA 217 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhc--------CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccC
Confidence 7999999988888777765553 688999887655433333221 111234578999999998731
Q ss_pred --------cCCCCHHHHHHHHHHHHhCC----------------------------------------------------
Q 010563 173 --------WGHDFRPSYRKLSSLRNYLP---------------------------------------------------- 192 (507)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~~---------------------------------------------------- 192 (507)
........|..+..+...+.
T Consensus 218 rtPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~ 297 (796)
T PRK12906 218 RTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTAL 297 (796)
T ss_pred CCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhH
Confidence 11111112222111111100
Q ss_pred -----------------------------------------------------------------------------CCC
Q 010563 193 -----------------------------------------------------------------------------DVP 195 (507)
Q Consensus 193 -----------------------------------------------------------------------------~~~ 195 (507)
-.+
T Consensus 298 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~k 377 (796)
T PRK12906 298 AHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKK 377 (796)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcch
Confidence 002
Q ss_pred EEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEe--ecchhhHHHHHHHHHHh--cCCccEEEEeccchhH
Q 010563 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTC 271 (507)
Q Consensus 196 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~ 271 (507)
+.+||+|+... ...+.+..++ .++..+.++|.+...... -.....++..+.+.+.. ..+.++||||+|++.+
T Consensus 378 l~GmTGTa~~e-~~Ef~~iY~l---~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~s 453 (796)
T PRK12906 378 LSGMTGTAKTE-EEEFREIYNM---EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESS 453 (796)
T ss_pred hhccCCCCHHH-HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 45555555432 2233333333 234445555554432211 11224677777777743 3678999999999999
Q ss_pred HHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCC---Ccc-----EEEEeCCCCCHHHHH
Q 010563 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAFY 343 (507)
Q Consensus 272 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p---~v~-----~VI~~~~p~s~~~y~ 343 (507)
+.++..|.+.|++...+||++...++..+.++++.|. |+|||+++|+|+|++ +|. +||++++|.|...|.
T Consensus 454 e~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~ 531 (796)
T PRK12906 454 ERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDN 531 (796)
T ss_pred HHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHH
Confidence 9999999999999999999999888888888877776 999999999999994 899 999999999999999
Q ss_pred HHhcccCCCCCCceEEEEeccchH
Q 010563 344 QESGRAGRDQLPSKSLLYYGMDDR 367 (507)
Q Consensus 344 Q~~GRagR~g~~~~~i~~~~~~d~ 367 (507)
|+.||+||.|.+|.+..|++.+|.
T Consensus 532 Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 532 QLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHhhhhccCCCCcceEEEEeccch
Confidence 999999999999999999998763
No 87
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.7e-27 Score=252.00 Aligned_cols=331 Identities=20% Similarity=0.243 Sum_probs=236.1
Q ss_pred hcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhcC--------------CCeEEEecChHHHHHHHHHH
Q 010563 33 HFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--------------PGIVLVVSPLIALMENQVIG 97 (507)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~i~~g-~d~lv~apTG~GKTl~~~lp~l~~--------------~~~~lvi~P~~~L~~q~~~~ 97 (507)
.+|..+|.++|..+.++.+.+ .+++++||||+|||-.+++-+|.. +.+++++.|..+|++.++..
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 358899999999999999987 489999999999999999988842 45899999999999999986
Q ss_pred HHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccc---cChhhHHHHHhhhccCCccEEEEeccccc
Q 010563 98 LKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT---ATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (507)
Q Consensus 98 l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~---~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (507)
+.+ +||.+.-..+........ + ...+++++|||.. ...+.-..+.+ .++++||||.|.+
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~q-----i----eeTqVIV~TPEK~DiITRk~gdraY~q-----lvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQ-----I----EETQVIVTTPEKWDIITRKSGDRAYEQ-----LVRLLIIDEIHLL 449 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhh-----h----hcceeEEeccchhhhhhcccCchhHHH-----HHHHHhhhhhhhc
Confidence 544 799988887665432211 1 1378999999943 32222222222 2688999999998
Q ss_pred cc-cCCCCHHHHHH-HHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec--cCCCCceEEEEEeec--chhh
Q 010563 171 SS-WGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRYKD--LLDD 244 (507)
Q Consensus 171 ~~-~g~~fr~~~~~-l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~~~ni~~~v~~~~--~~~~ 244 (507)
.+ .|.-...-..+ .........+..+++||||+|+- .|+...|....+..+.. ++....+.+.+.-.. ....
T Consensus 450 hDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred ccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 44 44211111111 11111122378899999999976 56777777665544433 555555655554221 1112
Q ss_pred HHHH-----HHHHHHhcCCccEEEEeccchhHHHHHHHHHhC-------------------------------------C
Q 010563 245 AYAD-----LCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-------------------------------------G 282 (507)
Q Consensus 245 ~~~~-----l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~-------------------------------------g 282 (507)
.++. ..++++..+++++|||+.+|+++.+.|..++.. -
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp 607 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP 607 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh
Confidence 2222 334566677789999999999998888877620 1
Q ss_pred CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEE----EeCC------CCCHHHHHHHhcccCCC
Q 010563 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNI------PKSMEAFYQESGRAGRD 352 (507)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI----~~~~------p~s~~~y~Q~~GRagR~ 352 (507)
+..+.+|+||+..+|..+.+.|.+|+++|+|+|-.+++|+|+|.-.++| .|++ +.|+.+.+|+.|||||.
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 2468899999999999999999999999999999999999999777766 3443 34899999999999997
Q ss_pred CC--CceEEEEeccchHHHHHHHHHhccc
Q 010563 353 QL--PSKSLLYYGMDDRRRMEFILSKNQS 379 (507)
Q Consensus 353 g~--~~~~i~~~~~~d~~~~~~~~~~~~~ 379 (507)
+. .|..++.-+.++.+....++++..+
T Consensus 688 ~~D~~gegiiit~~se~qyyls~mn~qLp 716 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQYYLSLMNQQLP 716 (1674)
T ss_pred ccCcCCceeeccCchHhhhhHHhhhhcCC
Confidence 64 5667888888887777666655433
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=1.1e-25 Score=245.45 Aligned_cols=311 Identities=14% Similarity=0.114 Sum_probs=192.3
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEecChHHHHHHHHHHHHH-----cC-
Q 010563 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKE-----KG- 102 (507)
Q Consensus 34 fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~--~~~~lvi~P~~~L~~q~~~~l~~-----~g- 102 (507)
|+..++||.|..+......+.-+++.+|||+|||.+++..+.. . ...+++..||++++++..+++++ ++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445799999988654444566899999999999988776542 2 35899999999999999998874 22
Q ss_pred CceEEecCCCCHHHH-HHHH-----------------HHhhcCC---CcccEEEECcccccChhhHH--HHHhhhccCCc
Q 010563 103 IAGEFLSSTQTMQVK-TKIY-----------------EDLDSGK---PSLRLLYVTPELTATPGFMS--KLKKIHSRGLL 159 (507)
Q Consensus 103 i~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~---~~~~il~~tpe~~~t~~~~~--~l~~~~~~~~l 159 (507)
..+...++....... .... .-+..+. .-..++++|...+....+.. ...+.... .-
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L-a~ 440 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL-GR 440 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh-cc
Confidence 234444443321110 0000 0011010 11345555555332111100 00111100 12
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCC--------CeE---------
Q 010563 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN--------PLV--------- 222 (507)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~--------~~~--------- 222 (507)
++|||||+|.+..+. ...+..+-..... .+.++|+||||++....+.+.+.++... |.+
T Consensus 441 svvIiDEVHAyD~ym---~~lL~~~L~~l~~-~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 441 SVLIVDEVHAYDAYM---YGLLEAVLKAQAQ-AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred CeEEEechhhCCHHH---HHHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 589999999964321 1112222222222 3678999999999988887776554221 111
Q ss_pred -EeccCC----CCceEEEEEee--c---chhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCC---CceeEec
Q 010563 223 -LKSSFN----RPNLFYEVRYK--D---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISCAAYH 289 (507)
Q Consensus 223 -~~~~~~----~~ni~~~v~~~--~---~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g---~~~~~~h 289 (507)
+..... .......+... . .....++.+.+.+. .+++++|||||++.++++++.|++.+ ..+..+|
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~--~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llH 594 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN--AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFH 594 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEe
Confidence 000000 00111111111 1 11222333333332 45689999999999999999999764 6799999
Q ss_pred CCCCHHHHH----HHHHHH-hcCC---ceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCC
Q 010563 290 AGLNDKARS----SVLDDW-ISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (507)
Q Consensus 290 ~~l~~~~R~----~~~~~f-~~g~---~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~ 354 (507)
|.++..+|. ++++.| ++|+ ..|||||++++.|||+ +++++|....| ++.|+||+||+||.+.
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999994 567778 5665 4799999999999999 68999988777 7899999999999886
No 89
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.6e-25 Score=236.75 Aligned_cols=324 Identities=21% Similarity=0.195 Sum_probs=235.3
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH--
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~-- 100 (507)
+.++.++.+|.. +++.|.-..-.+..|+ ++.|+||+|||+++.+|++. .+..+-|++|+..|+.+..+.+..
T Consensus 70 vrEa~~R~lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 70 VREASKRVLGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred HHHHHHHHhCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 345666777876 6788877666666665 89999999999999999852 355678999999999998888766
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc---
Q 010563 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (507)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~--- 172 (507)
+|+.+..+.++.+...+...+. .+|+|+||-.++-......+. .......+.++||||||.++=
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y~--------~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA 218 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAYA--------ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA 218 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhcC--------CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC
Confidence 5899999999888877665532 689999998774332222221 112245688999999998841
Q ss_pred --------cCCCCHHHHHHHHHHHHhC-----------------------------------------------------
Q 010563 173 --------WGHDFRPSYRKLSSLRNYL----------------------------------------------------- 191 (507)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~----------------------------------------------------- 191 (507)
-...-...|..+..+...+
T Consensus 219 rtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~ 298 (830)
T PRK12904 219 RTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAH 298 (830)
T ss_pred CCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHH
Confidence 1101111122221111111
Q ss_pred -------------------------------------------------C----------------CCCEEEEeecCChh
Q 010563 192 -------------------------------------------------P----------------DVPILALTATAAPK 206 (507)
Q Consensus 192 -------------------------------------------------~----------------~~~~i~lSAT~~~~ 206 (507)
+ -..+.+||+|+...
T Consensus 299 ~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 378 (830)
T PRK12904 299 ELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE 378 (830)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH
Confidence 0 01356677777543
Q ss_pred hHHHHHHHhCCCCCeEEeccCCCCceEEE---EEeecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhC
Q 010563 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (507)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~ 281 (507)
...+.+..++ .++..+.++|.+... ..+. ...+++..+.+.+.. ..+.++||||+|++.++.++..|.+.
T Consensus 379 -~~E~~~iY~l---~vv~IPtnkp~~r~d~~d~i~~-t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~ 453 (830)
T PRK12904 379 -AEEFREIYNL---DVVVIPTNRPMIRIDHPDLIYK-TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA 453 (830)
T ss_pred -HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 2334444433 345556666666543 2222 235678888887755 56779999999999999999999999
Q ss_pred CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCc----------------------------------
Q 010563 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------------------------- 327 (507)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v---------------------------------- 327 (507)
|+++..+||. +.+|+..+.+|..+...|+|||+++|+|+|++=-
T Consensus 454 gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 531 (830)
T PRK12904 454 GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVL 531 (830)
T ss_pred CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHH
Confidence 9999999995 7889999999999999999999999999998632
Q ss_pred ----cEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchH
Q 010563 328 ----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (507)
Q Consensus 328 ----~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~ 367 (507)
=+||....|.|..---|-.||+||.|.||.+..|.+.+|.
T Consensus 532 ~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 532 EAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2688889999999999999999999999999999998764
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=3.1e-25 Score=231.35 Aligned_cols=316 Identities=22% Similarity=0.269 Sum_probs=219.2
Q ss_pred hcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEecChHHHHHHHHHHHHH-cCCceEEe
Q 010563 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (507)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l---~~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~ 108 (507)
.|+|. +-.+|++||-++.+|.+++|.|+|.+|||+++-.++. .+..++++-+|.++|-+|..+.++. ||. +..+
T Consensus 293 ~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~D-vgLl 370 (1248)
T KOG0947|consen 293 IYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGD-VGLL 370 (1248)
T ss_pred hCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccc-ccee
Confidence 46776 7789999999999999999999999999988655443 2456899999999999999999988 432 2233
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc--cCCCCHHHHHHHHH
Q 010563 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLSS 186 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~~l~~ 186 (507)
.+. ..-+|....+++|.|++.+--+ ....-.+.+.+||+||+|-+.+ .| .....
T Consensus 371 TGD-------------vqinPeAsCLIMTTEILRsMLY----rgadliRDvE~VIFDEVHYiND~eRG-------vVWEE 426 (1248)
T KOG0947|consen 371 TGD-------------VQINPEASCLIMTTEILRSMLY----RGADLIRDVEFVIFDEVHYINDVERG-------VVWEE 426 (1248)
T ss_pred ecc-------------eeeCCCcceEeehHHHHHHHHh----cccchhhccceEEEeeeeeccccccc-------cccee
Confidence 322 1234668888888887754211 1111223489999999999976 33 22334
Q ss_pred HHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCC-CeEEecc-CCCCce--EEEEEeecc--------------------
Q 010563 187 LRNYLP-DVPILALTATAAPKVQKDVMESLCLQN-PLVLKSS-FNRPNL--FYEVRYKDL-------------------- 241 (507)
Q Consensus 187 l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~-~~~~~~~-~~~~ni--~~~v~~~~~-------------------- 241 (507)
+.-++| ++.+|+||||.+... ++..|.|-.. -.++..+ ..||-- +|....+..
T Consensus 427 ViIMlP~HV~~IlLSATVPN~~--EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~ 504 (1248)
T KOG0947|consen 427 VIIMLPRHVNFILLSATVPNTL--EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKD 504 (1248)
T ss_pred eeeeccccceEEEEeccCCChH--HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhh
Confidence 455666 799999999998763 3455555332 2222222 233211 000000000
Q ss_pred ---------------------------------h----------h---hHHHHHHHHHHhcCCccEEEEeccchhHHHHH
Q 010563 242 ---------------------------------L----------D---DAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (507)
Q Consensus 242 ---------------------------------~----------~---~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~ 275 (507)
. . ..+-.+...|+...--|+||||-|++.|++.+
T Consensus 505 ~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a 584 (1248)
T KOG0947|consen 505 SLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYA 584 (1248)
T ss_pred hhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHH
Confidence 0 0 02334555555555568999999999999999
Q ss_pred HHHHhCCC---------------------------------------ceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC
Q 010563 276 AYLSAGGI---------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (507)
Q Consensus 276 ~~L~~~g~---------------------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (507)
+.|....+ .++.+|||+=+--++-+.--|..|-++||+||.
T Consensus 585 ~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATE 664 (1248)
T KOG0947|consen 585 DYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATE 664 (1248)
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehh
Confidence 99964322 357899999999999999999999999999999
Q ss_pred cccccccCCCccEEEEeCCCC---------CHHHHHHHhcccCCCCCC--ceEEEEecc--chHHHHHHHHHhc
Q 010563 317 AFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQLP--SKSLLYYGM--DDRRRMEFILSKN 377 (507)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~---------s~~~y~Q~~GRagR~g~~--~~~i~~~~~--~d~~~~~~~~~~~ 377 (507)
.|+||||.| .|.||.-++-+ .+-+|.|++|||||-|.. |..+++... .+...++.++-..
T Consensus 665 TFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~ 737 (1248)
T KOG0947|consen 665 TFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGG 737 (1248)
T ss_pred hhhhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCC
Confidence 999999999 56666665554 789999999999999974 555555432 3556666665543
No 91
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=3e-25 Score=248.74 Aligned_cols=322 Identities=20% Similarity=0.244 Sum_probs=198.9
Q ss_pred CChHHHHHHHHHHhc----------CC---CCCcHHHHHHHHHHH----cC-CCEEEEcCCCchHHHHHHHH--Hhc---
Q 010563 20 LHEKEALVKLLRWHF----------GH---AQFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQIP--ALA--- 76 (507)
Q Consensus 20 ~~l~~~l~~~l~~~f----------g~---~~~r~~Q~~~i~~i~----~g-~d~lv~apTG~GKTl~~~lp--~l~--- 76 (507)
+..++++.+.++... .+ -.+|++|.+||.++. .| +.++++||||+|||.+.+.. .+.
T Consensus 382 f~~p~~L~~~l~~~~~~~~~~l~~~~~~~~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~ 461 (1123)
T PRK11448 382 WHTPEGLLDLLESDIEAANQWLADEPFDYGLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK 461 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhccCcccCCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 455666666665421 12 248999999998876 23 57999999999999764322 222
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceE-EecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH-Hhhh
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGE-FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIH 154 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~~~~ 154 (507)
...++|+|+|+.+|+.|..+.++.++.... .+....... ...... ...+.+++++|...+....+...- ....
T Consensus 462 ~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~---~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~ 536 (1123)
T PRK11448 462 RFRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIK---GLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKP 536 (1123)
T ss_pred ccCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchh---hhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccC
Confidence 246899999999999999999999765432 111100000 001111 122467888777654322110000 0112
Q ss_pred ccCCccEEEEeccccccc----cC---CCCH---HHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCC-------
Q 010563 155 SRGLLNLVAIDEAHCISS----WG---HDFR---PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL------- 217 (507)
Q Consensus 155 ~~~~l~~iViDEaH~i~~----~g---~~fr---~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~------- 217 (507)
..+.+++|||||||+-.. .+ ..|| ..|.....+...+ +..+|+|||||...... .++.
T Consensus 537 ~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~----~FG~pv~~Ysl 611 (1123)
T PRK11448 537 PVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTE----IFGEPVYTYSY 611 (1123)
T ss_pred CCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc-CccEEEEecCCccchhH----HhCCeeEEeeH
Confidence 345688999999999531 00 0122 2244444455543 56799999999754322 1121
Q ss_pred ---------C---CCeEEeccCCCCceEEEEE---------e-----ecchh--------------------hHHHHHHH
Q 010563 218 ---------Q---NPLVLKSSFNRPNLFYEVR---------Y-----KDLLD--------------------DAYADLCS 251 (507)
Q Consensus 218 ---------~---~~~~~~~~~~~~ni~~~v~---------~-----~~~~~--------------------~~~~~l~~ 251 (507)
- .|..+...+....+.+... . ....+ ...+.+.+
T Consensus 612 ~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~ 691 (1123)
T PRK11448 612 REAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAK 691 (1123)
T ss_pred HHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0 1222222111111111000 0 00000 00112233
Q ss_pred HHHhcCCccEEEEeccchhHHHHHHHHHhC------CC---ceeEecCCCCHHHHHHHHHHHhcCCc-eEEEEeCccccc
Q 010563 252 VLKANGDTCAIVYCLERTTCDELSAYLSAG------GI---SCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMG 321 (507)
Q Consensus 252 ~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~------g~---~~~~~h~~l~~~~R~~~~~~f~~g~~-~VLVaT~a~~~G 321 (507)
.+.....+++||||.++++|+.+++.|.+. ++ .+..+||+.+ ++..++++|+++.. .|+|+++++..|
T Consensus 692 ~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG 769 (1123)
T PRK11448 692 YLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTG 769 (1123)
T ss_pred HHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccC
Confidence 333344578999999999999999988753 22 3566888875 56789999999887 689999999999
Q ss_pred ccCCCccEEEEeCCCCCHHHHHHHhcccCCCC
Q 010563 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (507)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g 353 (507)
+|+|.|..||.+.+++|...|.|++||+.|-.
T Consensus 770 ~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 770 IDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred CCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999953
No 92
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=222.77 Aligned_cols=272 Identities=18% Similarity=0.229 Sum_probs=174.2
Q ss_pred CeEEEecChHHHHHHHHHHHHHcCCceE--EecC-CCCH-HHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--
Q 010563 79 GIVLVVSPLIALMENQVIGLKEKGIAGE--FLSS-TQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-- 152 (507)
Q Consensus 79 ~~~lvi~P~~~L~~q~~~~l~~~gi~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~-- 152 (507)
+.++|+-|.++|++|..+++++|..... .+.+ .... ...+.....+..+ ..|+++||-.+ ....+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g---~~ivvGtpgRl------~~~is~g 357 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDG---THIVVGTPGRL------LQPISKG 357 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcC---ceeeecCchhh------hhhhhcc
Confidence 3589999999999999987777532210 0000 0001 1111122222222 56666655433 32221
Q ss_pred hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-------CCCEEEEeecCChhhHHHHHHH-------hCCC
Q 010563 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQKDVMES-------LCLQ 218 (507)
Q Consensus 153 ~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------~~~~i~lSAT~~~~~~~~i~~~-------l~~~ 218 (507)
........++|+|||+.++.-|.+ ..|..+..++| ..+.+.+|||+..-....+.+. ..++
T Consensus 358 ~~~lt~crFlvlDead~lL~qgy~-----d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLk 432 (725)
T KOG0349|consen 358 LVTLTHCRFLVLDEADLLLGQGYD-----DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLK 432 (725)
T ss_pred ceeeeeeEEEEecchhhhhhcccH-----HHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecc
Confidence 122333678999999999886743 34444444444 3568999999864222212111 1111
Q ss_pred CCeE--------E---eccC-----------------CCCceEEEEEeecchhhHHHH-----HHHHHHhcCCccEEEEe
Q 010563 219 NPLV--------L---KSSF-----------------NRPNLFYEVRYKDLLDDAYAD-----LCSVLKANGDTCAIVYC 265 (507)
Q Consensus 219 ~~~~--------~---~~~~-----------------~~~ni~~~v~~~~~~~~~~~~-----l~~~l~~~~~~~~IVf~ 265 (507)
.... . ..+. .+.|+..--...+........ -...++++...++||||
T Consensus 433 geD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifc 512 (725)
T KOG0349|consen 433 GEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFC 512 (725)
T ss_pred cccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEE
Confidence 1000 0 0000 001110000000000111111 11233455667899999
Q ss_pred ccchhHHHHHHHHHhCC---CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHH
Q 010563 266 LERTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAF 342 (507)
Q Consensus 266 ~s~~~~~~l~~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y 342 (507)
+|+.+|+.|.+++.++| ++|+.+||+..+.+|++.++.|+.++++.||||+++++|+|+..+.++|+..+|.....|
T Consensus 513 rtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~ny 592 (725)
T KOG0349|consen 513 RTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNY 592 (725)
T ss_pred eccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchh
Confidence 99999999999999874 689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCceEEEEecc
Q 010563 343 YQESGRAGRDQLPSKSLLYYGM 364 (507)
Q Consensus 343 ~Q~~GRagR~g~~~~~i~~~~~ 364 (507)
+||+||+||+.+-|.+|.++..
T Consensus 593 vhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 593 VHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred hhhhhccchhhhcceeEEEeec
Confidence 9999999999999999988754
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.9e-24 Score=231.41 Aligned_cols=322 Identities=21% Similarity=0.184 Sum_probs=219.2
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH---
Q 010563 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (507)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~--- 100 (507)
.++-++.+|.. +++.|.-.--.+..|+ ++.|+||+|||++|.+|++. .+..++|++|++.|+.|..+.+..
T Consensus 72 rEa~~R~lg~~-~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~ 148 (896)
T PRK13104 72 REVSLRTLGLR-HFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYE 148 (896)
T ss_pred HHHHHHHcCCC-cchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhc
Confidence 34556667754 4566655444444554 89999999999999999984 455799999999999998888776
Q ss_pred -cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHH----HHhhhccCCccEEEEeccccccc---
Q 010563 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK----LKKIHSRGLLNLVAIDEAHCISS--- 172 (507)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~----l~~~~~~~~l~~iViDEaH~i~~--- 172 (507)
+|+.+..+.++.....+...+ ..+|+|+||-.++-...... +... -...+.++||||||.++-
T Consensus 149 ~lGLtv~~i~gg~~~~~r~~~y--------~~dIvygT~grlgfDyLrd~~~~~~~~~-v~r~l~~~IvDEaDsiLIDeA 219 (896)
T PRK13104 149 FLGLTVGVIYPDMSHKEKQEAY--------KADIVYGTNNEYGFDYLRDNMAFSLTDK-VQRELNFAIVDEVDSILIDEA 219 (896)
T ss_pred ccCceEEEEeCCCCHHHHHHHh--------CCCEEEECChhhhHHHHhcCCccchHhh-hccccceEEeccHhhhhhhcc
Confidence 588999988887766654433 26899999987632221111 1111 124689999999999842
Q ss_pred --------cCCCCHHHHHHHHHHHHhCC---------------CCCEEEEee----------------------------
Q 010563 173 --------WGHDFRPSYRKLSSLRNYLP---------------DVPILALTA---------------------------- 201 (507)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~~---------------~~~~i~lSA---------------------------- 201 (507)
-.......|..+..+...+. +...+.||-
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~ 299 (896)
T PRK13104 220 RTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNI 299 (896)
T ss_pred CCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhh
Confidence 11112233433333222111 112233333
Q ss_pred --------------------------------------------------------------------------------
Q 010563 202 -------------------------------------------------------------------------------- 201 (507)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (507)
T Consensus 300 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y 379 (896)
T PRK13104 300 MLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMY 379 (896)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhc
Confidence
Q ss_pred --------cCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEEEeccc
Q 010563 202 --------TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLER 268 (507)
Q Consensus 202 --------T~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~ 268 (507)
|+.... ..+.+..++ .++..+.++|.+.... .+. ...+++..+.+.+.. ..+.|+||||+|+
T Consensus 380 ~kLsGMTGTa~te~-~Ef~~iY~l---~Vv~IPtnkp~~R~d~~d~v~~-t~~~k~~av~~~i~~~~~~g~PVLVgt~Si 454 (896)
T PRK13104 380 NKLSGMTGTADTEA-YEFQQIYNL---EVVVIPTNRSMIRKDEADLVYL-TQADKFQAIIEDVRECGVRKQPVLVGTVSI 454 (896)
T ss_pred chhccCCCCChhHH-HHHHHHhCC---CEEECCCCCCcceecCCCeEEc-CHHHHHHHHHHHHHHHHhCCCCEEEEeCcH
Confidence 222111 111111111 1223334444433211 111 124566666655532 3567999999999
Q ss_pred hhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCC----------------------
Q 010563 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD---------------------- 326 (507)
Q Consensus 269 ~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~---------------------- 326 (507)
+.++.++..|.+.|++...+||++.+.++..+.+.|+.|. |+|||+++|+|+|+.=
T Consensus 455 e~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~ 532 (896)
T PRK13104 455 EASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEA 532 (896)
T ss_pred HHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHH
Confidence 9999999999999999999999999999999999999995 9999999999999751
Q ss_pred -----------c-----cEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchH
Q 010563 327 -----------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (507)
Q Consensus 327 -----------v-----~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~ 367 (507)
| =+||-...+.|-.---|-.||+||.|.||.+..|.+.+|.
T Consensus 533 ~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 533 VKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1 2688888899999999999999999999999999997764
No 94
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.93 E-value=9.2e-24 Score=232.71 Aligned_cols=308 Identities=18% Similarity=0.176 Sum_probs=215.1
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHH--HHhc----CCCeEEEecChHHHHHHHHHHHHHcC--Cce
Q 010563 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQI--PALA----KPGIVLVVSPLIALMENQVIGLKEKG--IAG 105 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~----~g~d~lv~apTG~GKTl~~~l--p~l~----~~~~~lvi~P~~~L~~q~~~~l~~~g--i~~ 105 (507)
.++|+|.+++.++. .|.++|+.-.+|.|||+..+. ..+. ..+.+|||+|. +++.+|.+.+.++. +.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999999886 567889999999999975432 2222 24678999998 66688999999863 334
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 010563 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (507)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (507)
..+++. ...+......... ...++++++|++++.... .......+++|||||||.+.... ..+.
T Consensus 248 ~~~~G~--~~eR~~~~~~~~~-~~~~dVvITSYe~l~~e~------~~L~k~~W~~VIvDEAHrIKN~~-------Skls 311 (1033)
T PLN03142 248 VKFHGN--PEERAHQREELLV-AGKFDVCVTSFEMAIKEK------TALKRFSWRYIIIDEAHRIKNEN-------SLLS 311 (1033)
T ss_pred EEEeCC--HHHHHHHHHHHhc-ccCCCcceecHHHHHHHH------HHhccCCCCEEEEcCccccCCHH-------HHHH
Confidence 334332 2222222222211 124788888888765421 11222348999999999987633 3344
Q ss_pred HHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc------C--------------------------------
Q 010563 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------F-------------------------------- 227 (507)
Q Consensus 186 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~-------------------------------- 227 (507)
.....+.....++|||||-++...++...+.+..|.++... +
T Consensus 312 kalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~ 391 (1033)
T PLN03142 312 KTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE 391 (1033)
T ss_pred HHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 44445555668999999999888888888777665443210 0
Q ss_pred -CCCceEEEEEeecch--------------------------------------------------------------hh
Q 010563 228 -NRPNLFYEVRYKDLL--------------------------------------------------------------DD 244 (507)
Q Consensus 228 -~~~ni~~~v~~~~~~--------------------------------------------------------------~~ 244 (507)
..|.....+...... ..
T Consensus 392 ~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~Sg 471 (1033)
T PLN03142 392 KGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSG 471 (1033)
T ss_pred hhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhh
Confidence 011111111111000 01
Q ss_pred HHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcC---CceEEEEeCccc
Q 010563 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVAFG 319 (507)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~VLVaT~a~~ 319 (507)
++..|..++.. ..+.++|||+........|.++|...|+....+||+++..+|..++++|.+. ...+|++|.+.|
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 11122222221 2356899999999999999999999999999999999999999999999753 345789999999
Q ss_pred ccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEe
Q 010563 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (507)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~ 362 (507)
.|||+..++.||+||+|+++....|++||+.|-|+...+.+|.
T Consensus 552 lGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 552 LGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred cCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 9999999999999999999999999999999999987766554
No 95
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=5.4e-25 Score=231.19 Aligned_cols=337 Identities=19% Similarity=0.293 Sum_probs=229.5
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHH--HHHHcCCCEEEEcCCCchHHHHHHHHHh----cCCCeEEEecChHHHHHHHHHH
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAI--QAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIG 97 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i--~~i~~g~d~lv~apTG~GKTl~~~lp~l----~~~~~~lvi~P~~~L~~q~~~~ 97 (507)
+.......+.+|...++.||.+++ +.++.+++.+..+||++|||++.-+-++ .....++.+.|..+.+++....
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhh
Confidence 344444455579999999999987 6688899999999999999999877665 4578899999999999999988
Q ss_pred HHHcCCceEEe----cCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc
Q 010563 98 LKEKGIAGEFL----SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (507)
Q Consensus 98 l~~~gi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (507)
+..++++..+. .+..+.. .......+.++|-|+-.+ ..+.+.+......+++|||||-|.+.+-
T Consensus 289 l~~~~~~~G~~ve~y~g~~~p~----------~~~k~~sv~i~tiEkans--lin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 289 LSPFSIDLGFPVEEYAGRFPPE----------KRRKRESVAIATIEKANS--LINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhhhccccCCcchhhcccCCCC----------CcccceeeeeeehHhhHh--HHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 88865444332 2111111 111235677788776544 3445555555666899999999999885
Q ss_pred CCCCHHHHHHHHHHHHhCC--CCCEEEEeecCChhhHHHHHHHhCC----C--CCeEEeccCCCCceEEEEEeecchhhH
Q 010563 174 GHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCL----Q--NPLVLKSSFNRPNLFYEVRYKDLLDDA 245 (507)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~----~--~~~~~~~~~~~~ni~~~v~~~~~~~~~ 245 (507)
|.+.--. .-|.++.-... .+++|+||||.++. .++..++.- . .|..+..........|.... ...
T Consensus 357 ~rg~~lE-~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r----~~~ 429 (1008)
T KOG0950|consen 357 GRGAILE-LLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSR----NKV 429 (1008)
T ss_pred ccchHHH-HHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchh----hHH
Confidence 5431110 11222222222 35699999999875 333444421 0 12222222222222333311 111
Q ss_pred HHHHH----------------HHHHh-c-CCccEEEEeccchhHHHHHHHHHhC-----------C--------------
Q 010563 246 YADLC----------------SVLKA-N-GDTCAIVYCLERTTCDELSAYLSAG-----------G-------------- 282 (507)
Q Consensus 246 ~~~l~----------------~~l~~-~-~~~~~IVf~~s~~~~~~l~~~L~~~-----------g-------------- 282 (507)
...+. .+..+ . .+.++||||++++.|+.++..+... +
T Consensus 430 lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 430 LREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 11111 11111 1 2335999999999999998766421 1
Q ss_pred -------------CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCC----CCCHHHHHHH
Q 010563 283 -------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----PKSMEAFYQE 345 (507)
Q Consensus 283 -------------~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~----p~s~~~y~Q~ 345 (507)
..++++|+|++.++|+.+...|++|.+.|++||+.+..|+|.|..|++|-.-+ ..+.-+|.|+
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhh
Confidence 14688999999999999999999999999999999999999998888885432 3478999999
Q ss_pred hcccCCCCC--CceEEEEeccchHHHHHHHHHhccc
Q 010563 346 SGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKNQS 379 (507)
Q Consensus 346 ~GRagR~g~--~~~~i~~~~~~d~~~~~~~~~~~~~ 379 (507)
+|||||.|- .|.+++.+...|.+++..++.....
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLK 625 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccchhHHHHHHhcccc
Confidence 999999985 6789999999999888887775543
No 96
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.4e-24 Score=234.93 Aligned_cols=308 Identities=24% Similarity=0.255 Sum_probs=208.1
Q ss_pred HhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHH---HhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEe
Q 010563 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (507)
Q Consensus 32 ~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp---~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~ 108 (507)
..+||+ +-++|++++..+.+|..|+|+||||+|||.+...+ ++.++.++++.+|.+||.+|..+.|...-....
T Consensus 114 ~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~-- 190 (1041)
T COG4581 114 REYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVA-- 190 (1041)
T ss_pred HhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhh--
Confidence 347887 88999999999999999999999999999875443 456777899999999999999999887322220
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 010563 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (507)
..-.+...-.+..++..++++|.|++.+-.+. .......+..||+||+|.|.+.. |. .......
T Consensus 191 -------~~vGL~TGDv~IN~~A~clvMTTEILRnMlyr----g~~~~~~i~~ViFDEvHyi~D~e---RG--~VWEE~I 254 (1041)
T COG4581 191 -------DMVGLMTGDVSINPDAPCLVMTTEILRNMLYR----GSESLRDIEWVVFDEVHYIGDRE---RG--VVWEEVI 254 (1041)
T ss_pred -------hhccceecceeeCCCCceEEeeHHHHHHHhcc----CcccccccceEEEEeeeeccccc---cc--hhHHHHH
Confidence 00001111122334567777777766543221 22334558999999999998732 22 3344455
Q ss_pred HhCC-CCCEEEEeecCChhhHHHHHHHhCC--CCCeEEeccCCCCc-eEEEEEee---------cc--hhhH----H---
Q 010563 189 NYLP-DVPILALTATAAPKVQKDVMESLCL--QNPLVLKSSFNRPN-LFYEVRYK---------DL--LDDA----Y--- 246 (507)
Q Consensus 189 ~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~~~~~n-i~~~v~~~---------~~--~~~~----~--- 246 (507)
-.+| ++++++||||.+... .+..|++. ..|..+.....||. +...+... .. .... .
T Consensus 255 i~lP~~v~~v~LSATv~N~~--EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l 332 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPNAE--EFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSL 332 (1041)
T ss_pred HhcCCCCcEEEEeCCCCCHH--HHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhh
Confidence 5667 579999999998763 33444442 34444444433332 21111110 00 0000 0
Q ss_pred -----------------------------------HHHHHHHHhcCCccEEEEeccchhHHHHHHHHHh-----------
Q 010563 247 -----------------------------------ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA----------- 280 (507)
Q Consensus 247 -----------------------------------~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~----------- 280 (507)
-.+...+.....-++|+|+-+++.|+..+..+..
T Consensus 333 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~ 412 (1041)
T COG4581 333 SCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER 412 (1041)
T ss_pred hccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHH
Confidence 0122233333445799999999999988887752
Q ss_pred -----------------CCC-------------ceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEE
Q 010563 281 -----------------GGI-------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (507)
Q Consensus 281 -----------------~g~-------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~V 330 (507)
.++ .++.+|+||=+..|..+...|..|-++|++||.++++|+|.| ++.|
T Consensus 413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP-artv 491 (1041)
T COG4581 413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP-ARTV 491 (1041)
T ss_pred HHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc-ccce
Confidence 111 135799999999999999999999999999999999999999 5666
Q ss_pred EEeCCC---------CCHHHHHHHhcccCCCCCC--ceEEEE
Q 010563 331 CHFNIP---------KSMEAFYQESGRAGRDQLP--SKSLLY 361 (507)
Q Consensus 331 I~~~~p---------~s~~~y~Q~~GRagR~g~~--~~~i~~ 361 (507)
+...+- -+..+|.|..|||||.|.. |.+++.
T Consensus 492 v~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 492 VFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred eeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 655443 3899999999999999974 555555
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=2e-22 Score=215.37 Aligned_cols=323 Identities=21% Similarity=0.175 Sum_probs=219.2
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH---
Q 010563 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (507)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~--- 100 (507)
.++.++.+|.. +++.|.-.--.+..|+ ++.|+||.|||+++.+|++. .+..+.||+|+..|+.+-.+.+..
T Consensus 72 rEaa~R~lgm~-~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 72 REASKRVFEMR-HFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred HHHHHHHhCCC-cCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 44556677765 5677765444444444 89999999999999999975 355699999999999987777655
Q ss_pred -cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH---hhhccCCccEEEEecccccccc---
Q 010563 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW--- 173 (507)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~~--- 173 (507)
+|+.+..+.++.....+...+ ..+|+|+||-.+.-..+...+. ...-...+.++||||||.++-.
T Consensus 149 ~lGlsv~~i~~~~~~~~r~~~Y--------~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEAr 220 (908)
T PRK13107 149 FLGLTVGINVAGLGQQEKKAAY--------NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEAR 220 (908)
T ss_pred hcCCeEEEecCCCCHHHHHhcC--------CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCC
Confidence 699999888777654433222 3789999998774332222211 1112355889999999988421
Q ss_pred ------C--CCCHHHHHHHHHHHHhCC--------------------CC-------------------------------
Q 010563 174 ------G--HDFRPSYRKLSSLRNYLP--------------------DV------------------------------- 194 (507)
Q Consensus 174 ------g--~~fr~~~~~l~~l~~~~~--------------------~~------------------------------- 194 (507)
| ..-...|..+..+...+. ..
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~ 300 (908)
T PRK13107 221 TPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYS 300 (908)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccC
Confidence 0 011122222221111100 11
Q ss_pred --------------------------------------------------------------------------------
Q 010563 195 -------------------------------------------------------------------------------- 194 (507)
Q Consensus 195 -------------------------------------------------------------------------------- 194 (507)
T Consensus 301 ~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (908)
T PRK13107 301 AANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNY 380 (908)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHH
Confidence
Q ss_pred -----CEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEEE
Q 010563 195 -----PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVY 264 (507)
Q Consensus 195 -----~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVf 264 (507)
++.+||+|+.... ..+.+..++ .++..+.++|.+.... .+.. ...++..+.+.+.. ..+.++|||
T Consensus 381 Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkp~~R~d~~d~iy~t-~~~K~~Aii~ei~~~~~~GrpVLV~ 455 (908)
T PRK13107 381 FRQYEKLAGMTGTADTEA-FEFQHIYGL---DTVVVPTNRPMVRKDMADLVYLT-ADEKYQAIIKDIKDCRERGQPVLVG 455 (908)
T ss_pred HHhhhHhhcccCCChHHH-HHHHHHhCC---CEEECCCCCCccceeCCCcEEeC-HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 1333444443321 122222222 2333444455433221 1111 24566665555432 346789999
Q ss_pred eccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCC------------------
Q 010563 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------ 326 (507)
Q Consensus 265 ~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~------------------ 326 (507)
|+|++.++.++..|.+.|+++..+|++++..++..+.+.|+.|. |+|||+++|+|+|+.=
T Consensus 456 t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~ 533 (908)
T PRK13107 456 TVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQ 533 (908)
T ss_pred eCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHH
Confidence 99999999999999999999999999999999999999999998 9999999999999861
Q ss_pred --------------c-----cEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchH
Q 010563 327 --------------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (507)
Q Consensus 327 --------------v-----~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~ 367 (507)
| =+||-...+.|..---|-.|||||.|.||.+..|++.+|-
T Consensus 534 ~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 534 KAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 1 2688888999999999999999999999999999998775
No 98
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=6.6e-24 Score=216.54 Aligned_cols=315 Identities=20% Similarity=0.250 Sum_probs=210.4
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HH-HhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHH
Q 010563 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IP-ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~--lp-~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~ 115 (507)
+-|+|..+|..+-++++++|.|-|.+|||.++- ++ +|....++|+-+|.+||-+|.++.|..---.+....+.
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGD---- 205 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGD---- 205 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecc----
Confidence 679999999999999999999999999997754 33 34567899999999999999999987722223222221
Q ss_pred HHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc--cCCCCHHHHHHHHHHHHhCC-
Q 010563 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLSSLRNYLP- 192 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~- 192 (507)
....|+..-+++|.|++.+--+ ...--.+.+..||+||+|-+-+ .|- ....-.-.+|
T Consensus 206 ---------VTInP~ASCLVMTTEILRsMLY----RGSEvmrEVaWVIFDEIHYMRDkERGV-------VWEETIIllP~ 265 (1041)
T KOG0948|consen 206 ---------VTINPDASCLVMTTEILRSMLY----RGSEVMREVAWVIFDEIHYMRDKERGV-------VWEETIILLPD 265 (1041)
T ss_pred ---------eeeCCCCceeeeHHHHHHHHHh----ccchHhheeeeEEeeeehhccccccce-------eeeeeEEeccc
Confidence 1223567777777776643211 1112234489999999999855 221 0111111234
Q ss_pred CCCEEEEeecCChhhH-HHHHHHhCCCCCeEEeccCCCCce------------EEEEEee-cchhhHHHH----------
Q 010563 193 DVPILALTATAAPKVQ-KDVMESLCLQNPLVLKSSFNRPNL------------FYEVRYK-DLLDDAYAD---------- 248 (507)
Q Consensus 193 ~~~~i~lSAT~~~~~~-~~i~~~l~~~~~~~~~~~~~~~ni------------~~~v~~~-~~~~~~~~~---------- 248 (507)
+++.++||||.+...+ .+....+.-+...++-..+....+ +..+..+ ...++.+..
T Consensus 266 ~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~ 345 (1041)
T KOG0948|consen 266 NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGE 345 (1041)
T ss_pred cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCC
Confidence 7899999999987642 223333444444444443332222 2222111 011111211
Q ss_pred ----------------------------HHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCC-----------------
Q 010563 249 ----------------------------LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI----------------- 283 (507)
Q Consensus 249 ----------------------------l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~----------------- 283 (507)
+...+-.....++|||+-|+++|+.+|-.+.+..+
T Consensus 346 ~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi 425 (1041)
T KOG0948|consen 346 SDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAI 425 (1041)
T ss_pred CccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHH
Confidence 22222223445799999999999999999865432
Q ss_pred ----------------------ceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCC----
Q 010563 284 ----------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---- 337 (507)
Q Consensus 284 ----------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~---- 337 (507)
.+..+|+||=+--++.+.=-|++|-+++|+||..|++|+|.| .+.|+....-+
T Consensus 426 ~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMP-AkTVvFT~~rKfDG~ 504 (1041)
T KOG0948|consen 426 DQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMP-AKTVVFTAVRKFDGK 504 (1041)
T ss_pred HhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCc-ceeEEEeeccccCCc
Confidence 357899999999999999999999999999999999999999 55566544332
Q ss_pred -----CHHHHHHHhcccCCCCC--CceEEEEeccc-hHHHHHHHHHhcc
Q 010563 338 -----SMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKNQ 378 (507)
Q Consensus 338 -----s~~~y~Q~~GRagR~g~--~~~~i~~~~~~-d~~~~~~~~~~~~ 378 (507)
|--+|+|++|||||-|. .|.||++.+.. +....+.+++...
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~a 553 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSA 553 (1041)
T ss_pred ceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCC
Confidence 67789999999999996 56777777643 5555566665443
No 99
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=3.3e-22 Score=212.35 Aligned_cols=322 Identities=20% Similarity=0.224 Sum_probs=239.9
Q ss_pred CCCcHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHHH---HHhcCCCeEEEecChHHHHHHHHHHHHH-cCCceEEe
Q 010563 37 AQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g----~d~lv~apTG~GKTl~~~l---p~l~~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~ 108 (507)
..+.+.|..++..+... +..++.+.||||||.+|+- .+|..+..+||++|-++|..|..++|+. ||.+++.+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vl 276 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVL 276 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhh
Confidence 36788999999998765 5689999999999999863 3466788999999999999999999998 89999999
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCHHHHHHHHHH
Q 010563 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPSYRKLSSL 187 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~~~~~l~~l 187 (507)
+++.+..++...|.....|. .+|+++|---+.+| ..++++|||||-|.-+--.. ..|..-+.+..+
T Consensus 277 HS~Ls~~er~~~W~~~~~G~--~~vVIGtRSAlF~P-----------f~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 277 HSGLSPGERYRVWRRARRGE--ARVVIGTRSALFLP-----------FKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred cccCChHHHHHHHHHHhcCC--ceEEEEechhhcCc-----------hhhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 99999999999999999886 88999887766665 24589999999998653222 245555788899
Q ss_pred HHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC---CCceEEEEEeec-------chhhHHHHHHHHHHhcC
Q 010563 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKD-------LLDDAYADLCSVLKANG 257 (507)
Q Consensus 188 ~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~ni~~~v~~~~-------~~~~~~~~l~~~l~~~~ 257 (507)
+....++|+|+-|||++-+....+.. +......+..-+. .|++.+.-.... .+...++.+.+.+. .
T Consensus 344 Ra~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~--~ 419 (730)
T COG1198 344 RAKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE--R 419 (730)
T ss_pred HHHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh--c
Confidence 99999999999999999887664421 1111111111111 333332221111 11333444444433 3
Q ss_pred CccEEEEeccc------------------------------------------------------------hhHHHHHHH
Q 010563 258 DTCAIVYCLER------------------------------------------------------------TTCDELSAY 277 (507)
Q Consensus 258 ~~~~IVf~~s~------------------------------------------------------------~~~~~l~~~ 277 (507)
++++|+|.|.| --++++++.
T Consensus 420 geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterieee 499 (730)
T COG1198 420 GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEE 499 (730)
T ss_pred CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHH
Confidence 45677777766 234788888
Q ss_pred HHhC--CCceeEecCCCCHHH--HHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCC------------CHHH
Q 010563 278 LSAG--GISCAAYHAGLNDKA--RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEA 341 (507)
Q Consensus 278 L~~~--g~~~~~~h~~l~~~~--R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~------------s~~~ 341 (507)
|++. +.+++.+.++.+... -+..+..|.+|+.+|||.|.++..|.|+|++..|...+... ...-
T Consensus 500 L~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fql 579 (730)
T COG1198 500 LKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQL 579 (730)
T ss_pred HHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHH
Confidence 8775 678888888876533 46789999999999999999999999999999988776442 4566
Q ss_pred HHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 342 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 342 y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
+.|-.|||||.+++|..++-....|...++.+..
T Consensus 580 l~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 580 LMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 7899999999999999888766666555555544
No 100
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=4.2e-22 Score=213.06 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCC-ceEEEEeCccc
Q 010563 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFG 319 (507)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~VLVaT~a~~ 319 (507)
..++..+.+-+.. ..+.|+||-|.|.+..+.++..|.+.|++...+++.-...+-.-+-+ .|+ -.|.|||+++|
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAG 627 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAG 627 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHh---cCCCCcEEEeecccc
Confidence 3455555444332 24578999999999999999999999999888888754444333333 343 46999999999
Q ss_pred ccccCCC---c-----cEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchH
Q 010563 320 MGIDRKD---V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (507)
Q Consensus 320 ~GiD~p~---v-----~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~ 367 (507)
+|.|+.- | =+||-...|.|..--.|-.||+||.|.||.+..|++.+|.
T Consensus 628 RGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 628 RGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred CCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 9999752 2 2788899999999999999999999999999999998774
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=6.9e-22 Score=208.90 Aligned_cols=292 Identities=20% Similarity=0.259 Sum_probs=206.1
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEecChHHHHHHHHHHHHH
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l---~~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
++..+..++..|+ .|+..|.--...++.|++.-++||||.|||.--++.++ .++.++++|+||..|+.|..+++++
T Consensus 69 e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 69 EEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH
Confidence 4456667777787 69999999999999999999999999999965544443 3568999999999999999999999
Q ss_pred cCC-----ceEE-ecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC
Q 010563 101 KGI-----AGEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (507)
Q Consensus 101 ~gi-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (507)
++- .+.. .|+..+.+++.+....+.+|. .+|+++| ..|+..-.......++++++||++|.++.-+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gd--fdIlitT------s~FL~k~~e~L~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGD--FDILITT------SQFLSKRFEELSKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCC--ccEEEEe------HHHHHhhHHHhcccCCCEEEEccHHHHHhcc
Confidence 752 2222 567778889999999999986 6665555 4444333333333569999999999986533
Q ss_pred CC---------CHH-----H---------------HHHHHHHHH---------hCCCCCEEEEeecCChhh-HHH-HHHH
Q 010563 175 HD---------FRP-----S---------------YRKLSSLRN---------YLPDVPILALTATAAPKV-QKD-VMES 214 (507)
Q Consensus 175 ~~---------fr~-----~---------------~~~l~~l~~---------~~~~~~~i~lSAT~~~~~-~~~-i~~~ 214 (507)
.. |.. . +.++..... ......++..|||..+.- +.. +...
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 11 111 0 011111111 112346889999987643 222 3334
Q ss_pred hCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEecc---chhHHHHHHHHHhCCCceeEecCC
Q 010563 215 LCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE---RTTCDELSAYLSAGGISCAAYHAG 291 (507)
Q Consensus 215 l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s---~~~~~~l~~~L~~~g~~~~~~h~~ 291 (507)
|++.-. .......|+.-..... .....+.++++..+.+ +|||++. ++.+++++++|+..|+++..+|++
T Consensus 300 lgFevG---~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~G-gLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 300 LGFEVG---SGGEGLRNIVDIYVES----ESLEKVVELVKKLGDG-GLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred hCCccC---ccchhhhheeeeeccC----ccHHHHHHHHHHhCCC-eEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 444311 1222233443222221 4556667777777664 8999999 899999999999999999999993
Q ss_pred CCHHHHHHHHHHHhcCCceEEEEe----CcccccccCCC-ccEEEEeCCCC
Q 010563 292 LNDKARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK 337 (507)
Q Consensus 292 l~~~~R~~~~~~f~~g~~~VLVaT----~a~~~GiD~p~-v~~VI~~~~p~ 337 (507)
- +..++.|..|+++|||.. .++-+|||+|. ++++|.++.|+
T Consensus 372 ~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 K-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred c-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 2 667999999999999985 56889999997 89999999993
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.1e-21 Score=184.86 Aligned_cols=295 Identities=20% Similarity=0.273 Sum_probs=194.1
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEcCCCchHH-HHHHH--HHhcCCCeEEEecChHHHHHHHHHHHHH-c-CCceEEe
Q 010563 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKS-MCYQI--PALAKPGIVLVVSPLIALMENQVIGLKE-K-GIAGEFL 108 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~----~g~d~lv~apTG~GKT-l~~~l--p~l~~~~~~lvi~P~~~L~~q~~~~l~~-~-gi~~~~~ 108 (507)
+++|+|+.+-..++ +.++.+++|-||+||| ..|+. .++..++.+.+.+|....+.+...+|+. | ++....+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 69999999876655 5689999999999999 44543 4567899999999999999999999987 3 3666666
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 010563 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (507)
++......+ +|-+++|...+.++.+. ++++||||+|...--. | ...+..+...
T Consensus 177 yg~S~~~fr-------------------~plvVaTtHQLlrFk~a-----FD~liIDEVDAFP~~~-d-~~L~~Av~~a- 229 (441)
T COG4098 177 YGDSDSYFR-------------------APLVVATTHQLLRFKQA-----FDLLIIDEVDAFPFSD-D-QSLQYAVKKA- 229 (441)
T ss_pred ecCCchhcc-------------------ccEEEEehHHHHHHHhh-----ccEEEEeccccccccC-C-HHHHHHHHHh-
Confidence 655432211 23355554433333332 7999999999864211 1 1111222222
Q ss_pred HhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC-----CCceEEEEEeec-chhhHH-HHHHHHHHhc--CCc
Q 010563 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-----RPNLFYEVRYKD-LLDDAY-ADLCSVLKAN--GDT 259 (507)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-----~~ni~~~v~~~~-~~~~~~-~~l~~~l~~~--~~~ 259 (507)
.-++-..|.||||++....+++... -.....+..-+. .|...+.-.... ....++ -.|..+++.. .+.
T Consensus 230 -rk~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 230 -RKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred -hcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCC
Confidence 2246789999999998877765431 111111111111 121111111110 001111 1455666543 457
Q ss_pred cEEEEeccchhHHHHHHHHHhC-C-CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCC--
Q 010563 260 CAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-- 335 (507)
Q Consensus 260 ~~IVf~~s~~~~~~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~-- 335 (507)
+++||+++.+..+++++.|++. + ..++..|+ ....|.+..++|++|++.+||+|..+++|+-.|+|++.|.-.-
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs--~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHS--EDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeec--cCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcc
Confidence 8999999999999999999654 3 34567787 4467899999999999999999999999999999998774332
Q ss_pred CCCHHHHHHHhcccCCCCC-CceEEEEecc
Q 010563 336 PKSMEAFYQESGRAGRDQL-PSKSLLYYGM 364 (507)
Q Consensus 336 p~s~~~y~Q~~GRagR~g~-~~~~i~~~~~ 364 (507)
-.+-+..+|..||+||.-. |.--++||..
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred cccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 2578999999999999643 4334444443
No 103
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.90 E-value=1.7e-22 Score=188.47 Aligned_cols=183 Identities=20% Similarity=0.237 Sum_probs=138.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc--------CCCeEEEecChH
Q 010563 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------KPGIVLVVSPLI 88 (507)
Q Consensus 17 ~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~--------~~~~~lvi~P~~ 88 (507)
|+.+.+++.+.+.|.+ +|+..|+++|.++++.+++|+++++.+|||+|||++|++|++. ..++++|++|++
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 5678889999999999 7999999999999999999999999999999999999999873 245799999999
Q ss_pred HHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEE
Q 010563 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (507)
Q Consensus 89 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iVi 164 (507)
+|+.|+...++.+ ++.+..+.++.........+. ...+++++||+.+...-. ........++++|+
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~T~~~l~~~l~----~~~~~~~~l~~lIv 149 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK------RGPHIVVATPGRLLDLLE----RGKLDLSKVKYLVL 149 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHHHHHH----cCCCChhhCCEEEE
Confidence 9999999888775 566677777666544332221 236798999876533110 11123455899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHh
Q 010563 165 DEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (507)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l 215 (507)
||+|.+.+++ |...+..+ ...++ +.+++++|||+++.+...+...+
T Consensus 150 DE~h~~~~~~--~~~~~~~~---~~~l~~~~~~~~~SAT~~~~~~~~~~~~~ 196 (203)
T cd00268 150 DEADRMLDMG--FEDQIREI---LKLLPKDRQTLLFSATMPKEVRDLARKFL 196 (203)
T ss_pred eChHHhhccC--hHHHHHHH---HHhCCcccEEEEEeccCCHHHHHHHHHHC
Confidence 9999988655 55444443 33333 78899999999987766554543
No 104
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=4.9e-21 Score=205.16 Aligned_cols=129 Identities=22% Similarity=0.329 Sum_probs=112.1
Q ss_pred HHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccc
Q 010563 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (507)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (507)
.+..|.+.++. ..+.++||||+|++.++.+++.|.+.|+++..+|++++..+|.++++.|++|++.|+|||+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 33444444433 3456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEeC-----CCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHH
Q 010563 323 DRKDVRLVCHFN-----IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (507)
Q Consensus 323 D~p~v~~VI~~~-----~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~ 374 (507)
|+|++++||+++ .|.+..+|+||+|||||. ..|.+++|++..+....+.+.
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHH
Confidence 999999999998 799999999999999998 589999998876655444433
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=1e-21 Score=211.66 Aligned_cols=302 Identities=19% Similarity=0.204 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEecChHHHHHHHHHHHHH-cCCc----eEEec
Q 010563 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLS 109 (507)
Q Consensus 41 ~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~P~~~L~~q~~~~l~~-~gi~----~~~~~ 109 (507)
....+.+.++...+-+++.+|||+|||. ++|... .++.+.+.-|.+--+...++++.. +|.+ +.+..
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 4555677777788889999999999996 555432 245778888998666666666554 3332 22211
Q ss_pred CCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 010563 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (507)
.. ++ .-.+..++-|+|..++ +..+.....+..+++|||||||.-+-- .||- +.-+..+..
T Consensus 131 Rf----------e~--~~s~~Trik~mTdGiL-----lrei~~D~~Ls~ys~vIiDEaHERSl~-tDil--Lgllk~~~~ 190 (845)
T COG1643 131 RF----------ES--KVSPRTRIKVMTDGIL-----LREIQNDPLLSGYSVVIIDEAHERSLN-TDIL--LGLLKDLLA 190 (845)
T ss_pred Ee----------ec--cCCCCceeEEeccHHH-----HHHHhhCcccccCCEEEEcchhhhhHH-HHHH--HHHHHHHHh
Confidence 10 00 0112355544444433 334455555777999999999985431 1111 122334344
Q ss_pred hCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC-CCceEEEEEe-ecc-hhhHHHHHHHHHHhcCCccEEEEe
Q 010563 190 YLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRY-KDL-LDDAYADLCSVLKANGDTCAIVYC 265 (507)
Q Consensus 190 ~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~-~~ni~~~v~~-~~~-~~~~~~~l~~~l~~~~~~~~IVf~ 265 (507)
..+ +.++|.||||+..+... +.++- -|.+....-. .-.++|.-.. .+. ..+.+..........+.+.+|||.
T Consensus 191 ~rr~DLKiIimSATld~~rfs---~~f~~-apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFL 266 (845)
T COG1643 191 RRRDDLKLIIMSATLDAERFS---AYFGN-APVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFL 266 (845)
T ss_pred hcCCCceEEEEecccCHHHHH---HHcCC-CCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEEC
Confidence 445 68999999999877443 33332 3433332222 2223332111 111 222333333333345577899999
Q ss_pred ccchhHHHHHHHHHh----CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCC----
Q 010563 266 LERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---- 337 (507)
Q Consensus 266 ~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~---- 337 (507)
+...+.+.+++.|.+ ....+..+||.|+.++..++++--..|..+|++||++++.+|-+|+|++||.-+.-+
T Consensus 267 pG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y 346 (845)
T COG1643 267 PGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRY 346 (845)
T ss_pred CcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccc
Confidence 999999999999998 346789999999999998887776677777999999999999999999999766443
Q ss_pred --------------CHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 010563 338 --------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (507)
Q Consensus 338 --------------s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~ 369 (507)
|-.+.-||.|||||-+ +|.|+-+|+.++...
T Consensus 347 ~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~~ 391 (845)
T COG1643 347 DPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFLA 391 (845)
T ss_pred ccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHHh
Confidence 7889999999999998 899999999876653
No 106
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.89 E-value=3.9e-22 Score=203.41 Aligned_cols=298 Identities=20% Similarity=0.252 Sum_probs=205.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEecChHHHHHHHHHHHHH-----cCCceEEecCCC
Q 010563 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLSSTQ 112 (507)
Q Consensus 44 ~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~P~~~L~~q~~~~l~~-----~gi~~~~~~~~~ 112 (507)
.+.+..+-+++-+++++.||+|||. |+|-.. ..|.+.+.-|.|--+...+.+... +|-.+.+-..
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR-- 132 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR-- 132 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE--
Confidence 3466777778889999999999996 666543 456777777988665555555433 2333322110
Q ss_pred CHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHH--HHHHHHHHHh
Q 010563 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS--YRKLSSLRNY 190 (507)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~--~~~l~~l~~~ 190 (507)
+.+ ....+.+|.|+|..++.. .+.....+.+.++||+||||.-+- .-+ +.-|..+...
T Consensus 133 --------Fed--~ts~~TrikymTDG~LLR-----E~l~Dp~LskYsvIIlDEAHERsl-----~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 133 --------FED--STSKDTRIKYMTDGMLLR-----EILKDPLLSKYSVIILDEAHERSL-----HTDILLGLLKKILKK 192 (674)
T ss_pred --------ecc--cCCCceeEEEecchHHHH-----HHhcCCccccccEEEEechhhhhh-----HHHHHHHHHHHHHhc
Confidence 001 111247888887766543 333334456689999999998432 111 2234555566
Q ss_pred CCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCC-ceEEEEEe-ecchhhHHHHHHHHHHhcCCccEEEEeccc
Q 010563 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRY-KDLLDDAYADLCSVLKANGDTCAIVYCLER 268 (507)
Q Consensus 191 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~-ni~~~v~~-~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~ 268 (507)
.++.++|.+|||+..+....++.. -|.+...+-.-| .+.|.-.+ .+..+..+..+.++....+.+-+|||....
T Consensus 193 R~~LklIimSATlda~kfS~yF~~----a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGq 268 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDAEKFSEYFNN----APILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQ 268 (674)
T ss_pred CCCceEEEEeeeecHHHHHHHhcC----CceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCH
Confidence 678889999999987765544332 344443332222 22232211 122334455555665666777899999999
Q ss_pred hhHHHHHHHHHhC----C--C--ceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCC-----
Q 010563 269 TTCDELSAYLSAG----G--I--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----- 335 (507)
Q Consensus 269 ~~~~~l~~~L~~~----g--~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~----- 335 (507)
++.+.+++.|.+. + . -+..+||.|+.++..++.+.-..|..+|++||+.++..|-+++|++||.-+.
T Consensus 269 eEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~ 348 (674)
T KOG0922|consen 269 EEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKK 348 (674)
T ss_pred HHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEe
Confidence 9999999999874 1 1 2467999999999999888877899999999999999999999999996553
Q ss_pred -------------CCCHHHHHHHhcccCCCCCCceEEEEeccchHHHH
Q 010563 336 -------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (507)
Q Consensus 336 -------------p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~ 370 (507)
|-|..+-.||.|||||.| +|.|+-+|+.++...+
T Consensus 349 y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 349 YNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKM 395 (674)
T ss_pred eccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhhc
Confidence 348899999999999998 9999999998887544
No 107
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.8e-20 Score=201.11 Aligned_cols=124 Identities=23% Similarity=0.254 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHhc--CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccc
Q 010563 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (507)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~ 320 (507)
.+++..|.+.+... .+.++||||+|++.++.++..|.+.|++...+|+ .+.+|+..+..|..+...|+|||+++|+
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 46778888877543 5679999999999999999999999999999998 6789999999999999999999999999
Q ss_pred cccCC---CccE-----EEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHH
Q 010563 321 GIDRK---DVRL-----VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (507)
Q Consensus 321 GiD~p---~v~~-----VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~ 368 (507)
|+|++ .|.. ||++..|.|...|.|++||+||.|.+|.++.|++.+|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 5543 489999999999999999999999999999999987753
No 108
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=2.2e-21 Score=212.16 Aligned_cols=313 Identities=22% Similarity=0.208 Sum_probs=196.4
Q ss_pred CcHHHHHHHHHHHcC---C-CEEEEcCCCchHHHHHHHHHhc-------CCCeEEEecChHHHHHHHHHHHHHc-CCceE
Q 010563 39 FRDKQLDAIQAVLSG---R-DCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMENQVIGLKEK-GIAGE 106 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g---~-d~lv~apTG~GKTl~~~lp~l~-------~~~~~lvi~P~~~L~~q~~~~l~~~-gi~~~ 106 (507)
.++.|..++..+.+. . .+++.||||+|||.+.+.+++. ...+++.+.|++++++++.++++.. +....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 478999999988754 4 6889999999999998888753 2568999999999999999999873 22211
Q ss_pred E---ecCCCCHHHHHHHHH---Hhhc-----CCCcccEEEECcccccC----hhhHHHHHhhhccCCccEEEEecccccc
Q 010563 107 F---LSSTQTMQVKTKIYE---DLDS-----GKPSLRLLYVTPELTAT----PGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 107 ~---~~~~~~~~~~~~~~~---~~~~-----~~~~~~il~~tpe~~~t----~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
. .++............ .... ...-..+..++|..+.. +.....+..+. .+++|+||+|.+.
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~S~vIlDE~h~~~ 351 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLL----TSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHH----hhchhhccHHhhc
Confidence 1 122221111110000 0000 00011122222222111 00001011111 5789999999987
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc----CCCCceEEEEEeecchhhHH-
Q 010563 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVRYKDLLDDAY- 246 (507)
Q Consensus 172 ~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~~~ni~~~v~~~~~~~~~~- 246 (507)
+.. .-.....+..+... -+.++|++|||+|+...+.+...++-........+ .+.+.+.-... .+. .+..
T Consensus 352 ~~~--~~~~l~~~i~~l~~-~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~-~~~~~ 426 (733)
T COG1203 352 DET--MLAALLALLEALAE-AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER-VDV-EDGPQ 426 (733)
T ss_pred ccc--hHHHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc-hhh-hhhhh
Confidence 642 12222222222222 28999999999999998888877755443333222 12222211111 010 1110
Q ss_pred HHHHHHH--HhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHh----cCCceEEEEeCcccc
Q 010563 247 ADLCSVL--KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAFGM 320 (507)
Q Consensus 247 ~~l~~~l--~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~----~g~~~VLVaT~a~~~ 320 (507)
..+.... .-..+.+++|.|||++.|.+++..|+..+.++..+|+.+...+|.+.++.+. .+...|+|||++.+.
T Consensus 427 ~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEa 506 (733)
T COG1203 427 EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEA 506 (733)
T ss_pred HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEE
Confidence 0111111 1234568999999999999999999998878999999999999998887644 577889999999999
Q ss_pred cccCCCccEEEEeCCCCCHHHHHHHhcccCCCC--CCceEEEEec
Q 010563 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPSKSLLYYG 363 (507)
Q Consensus 321 GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g--~~~~~i~~~~ 363 (507)
|+|+. .+++|- -+..+.+.+||.||++|.| ..|..+++-.
T Consensus 507 gvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 507 GVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred Eeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 99984 777663 3456999999999999999 5566666543
No 109
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=1.8e-19 Score=194.62 Aligned_cols=108 Identities=24% Similarity=0.362 Sum_probs=101.8
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCC-
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI- 335 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~- 335 (507)
.+.++||||+|++.++.+++.|.+.|+++..+||+++..+|..+++.|+.|++.|+|||+.+++|+|+|++++||+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred ----CCCHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 336 ----PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 336 ----p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
|.+.++|+||+||+||. ..|.+++|++..
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 78999999999999996 689999999853
No 110
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=6.7e-19 Score=184.29 Aligned_cols=324 Identities=19% Similarity=0.172 Sum_probs=223.8
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH--
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~-- 100 (507)
+.++.++.+|.. +++.|.-..-.++.|+ ++.|.||.|||++..+|+.. .+..+.|++|+--|+.+-.+.+..
T Consensus 67 vREa~~R~lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 67 AREAAERTLGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHHHHHHcCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 445666778876 7789999888888875 78999999999999998874 577899999999999988887665
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH---hhhccCCccEEEEecccccccc--
Q 010563 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW-- 173 (507)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~~-- 173 (507)
+|+.+..+.+..+..++...+. .+|.|+|.--+.-......+. ...-...+.+.||||+|.++-.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeA 215 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYA--------CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEA 215 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHc--------CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccc
Confidence 6999999988888877766653 679999987665443333331 1122345889999999987410
Q ss_pred -------CC-CCHHHHHHHHHHHHhCC-----------------------------------------------------
Q 010563 174 -------GH-DFRPSYRKLSSLRNYLP----------------------------------------------------- 192 (507)
Q Consensus 174 -------g~-~fr~~~~~l~~l~~~~~----------------------------------------------------- 192 (507)
|. +-...|..+..+...+.
T Consensus 216 rtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~ 295 (764)
T PRK12326 216 LVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAH 295 (764)
T ss_pred cCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHH
Confidence 00 00012222221111110
Q ss_pred ------------------------------------------------------------------CCCEEEEeecCChh
Q 010563 193 ------------------------------------------------------------------DVPILALTATAAPK 206 (507)
Q Consensus 193 ------------------------------------------------------------------~~~~i~lSAT~~~~ 206 (507)
-..+.+||+|+...
T Consensus 296 ~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~ 375 (764)
T PRK12326 296 ALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAA 375 (764)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhH
Confidence 00255666666443
Q ss_pred hHHHHHHHhCCCCCeEEeccCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhC
Q 010563 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (507)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~ 281 (507)
. ..+.+..++. ++..+.++|.+.... .+.. ..+++..+.+.+.. ..+.|+||.|.|.+.++.++..|.+.
T Consensus 376 ~-~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t-~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~ 450 (764)
T PRK12326 376 G-EQLRQFYDLG---VSVIPPNKPNIREDEADRVYAT-AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA 450 (764)
T ss_pred H-HHHHHHhCCc---EEECCCCCCceeecCCCceEeC-HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 2 3344444432 444555666554321 1221 24566665555432 35679999999999999999999999
Q ss_pred CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCC----------Cc-----cEEEEeCCCCCHHHHHHHh
Q 010563 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK----------DV-----RLVCHFNIPKSMEAFYQES 346 (507)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p----------~v-----~~VI~~~~p~s~~~y~Q~~ 346 (507)
|++...+++.-...+-.-+-+.=+ .-.|.|||+++|+|.|+. .| =+||-...+.|..---|-.
T Consensus 451 gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLr 528 (764)
T PRK12326 451 GVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLR 528 (764)
T ss_pred CCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHh
Confidence 999999998755444333333222 245999999999999976 22 2788899999999999999
Q ss_pred cccCCCCCCceEEEEeccchH
Q 010563 347 GRAGRDQLPSKSLLYYGMDDR 367 (507)
Q Consensus 347 GRagR~g~~~~~i~~~~~~d~ 367 (507)
||+||.|.||.+..|.+.+|.
T Consensus 529 GRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 529 GRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred cccccCCCCCceeEEEEcchh
Confidence 999999999999999987764
No 111
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.86 E-value=1.2e-19 Score=186.50 Aligned_cols=308 Identities=19% Similarity=0.217 Sum_probs=226.1
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHH--HHHHh----cCCCeEEEecChHHHHHHHHHHHHHc--CCc
Q 010563 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCY--QIPAL----AKPGIVLVVSPLIALMENQVIGLKEK--GIA 104 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~----~g~d~lv~apTG~GKTl~~--~lp~l----~~~~~~lvi~P~~~L~~q~~~~l~~~--gi~ 104 (507)
..+|++|.+.+.++. +|-++|+.-..|-|||+-- ++.-+ --.|.-||++|...| ..|++.++++ .++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCcc
Confidence 479999999998876 5678999999999999532 22222 237889999999877 6799999997 456
Q ss_pred eEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHH
Q 010563 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (507)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l 184 (507)
+..+++. ..++.....++.... ..+++++|.|++.... ..|. .-++.++||||||++.... ..|
T Consensus 245 ~~~~~Gd--k~eR~~~~r~~~~~~-~fdV~iTsYEi~i~dk--~~lk----~~~W~ylvIDEaHRiKN~~-------s~L 308 (971)
T KOG0385|consen 245 VVVYHGD--KEERAALRRDIMLPG-RFDVCITSYEIAIKDK--SFLK----KFNWRYLVIDEAHRIKNEK-------SKL 308 (971)
T ss_pred eEEEeCC--HHHHHHHHHHhhccC-CCceEeehHHHHHhhH--HHHh----cCCceEEEechhhhhcchh-------hHH
Confidence 6665544 466666666654443 5889999999876542 1222 2348999999999998754 567
Q ss_pred HHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc------CCC-----------------------------
Q 010563 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FNR----------------------------- 229 (507)
Q Consensus 185 ~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~~~----------------------------- 229 (507)
......|.-.-.+++|+|+-++....++..|++--|.++... |+.
T Consensus 309 ~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dV 388 (971)
T KOG0385|consen 309 SKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDV 388 (971)
T ss_pred HHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhH
Confidence 777777777778999999998888888888877666655320 000
Q ss_pred -----------------------------------------------------------CceEEEEEeec-c--------
Q 010563 230 -----------------------------------------------------------PNLFYEVRYKD-L-------- 241 (507)
Q Consensus 230 -----------------------------------------------------------~ni~~~v~~~~-~-------- 241 (507)
|.++....+.+ .
T Consensus 389 e~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~ 468 (971)
T KOG0385|consen 389 EKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVT 468 (971)
T ss_pred hhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHh
Confidence 00000000000 0
Q ss_pred hhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcC---CceEEEEeC
Q 010563 242 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATV 316 (507)
Q Consensus 242 ~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g---~~~VLVaT~ 316 (507)
...++..|..+|.. ..+.++|||..-....+-|.+++.-+|+....+.|.++.++|...++.|... ..-.|++|-
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 00111122222221 2356799999888888888888888999999999999999999999999854 345789999
Q ss_pred cccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEE
Q 010563 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (507)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~ 361 (507)
|.|.|||+...+.||.||..+++..-+|..-||.|-|+...+.+|
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 999999999999999999999999999999999999998776666
No 112
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.85 E-value=8.5e-21 Score=171.49 Aligned_cols=156 Identities=29% Similarity=0.410 Sum_probs=118.1
Q ss_pred cHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEecChHHHHHHHHHHHHHcC----CceEEecC
Q 010563 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKEKG----IAGEFLSS 110 (507)
Q Consensus 40 r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~--~~~~lvi~P~~~L~~q~~~~l~~~g----i~~~~~~~ 110 (507)
+|+|.++++.+.+|+++++.+|||+|||++|++|++. . ...+++++|+++|++|+.+.+..++ ++...+..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999998864 2 3499999999999999999999864 35677766
Q ss_pred CCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh-hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 010563 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (507)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~-~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (507)
+......... .+ . ...+++++||+.+.. .+.. ......+++|||||+|.+..|+ ++..+..+.....
T Consensus 81 ~~~~~~~~~~--~~-~--~~~~ilv~T~~~l~~-----~~~~~~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 81 GQSISEDQRE--VL-S--NQADILVTTPEQLLD-----LISNGKINISRLSLIVIDEAHHLSDET--FRAMLKSILRRLK 148 (169)
T ss_dssp TSCHHHHHHH--HH-H--TTSSEEEEEHHHHHH-----HHHTTSSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHSH
T ss_pred cccccccccc--cc-c--ccccccccCcchhhc-----cccccccccccceeeccCccccccccc--HHHHHHHHHHHhc
Confidence 6654322111 11 1 137898999887532 2221 1133448999999999999984 7877777776666
Q ss_pred hCCCCCEEEEeecCChhh
Q 010563 190 YLPDVPILALTATAAPKV 207 (507)
Q Consensus 190 ~~~~~~~i~lSAT~~~~~ 207 (507)
..++.+++++|||+++.+
T Consensus 149 ~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 149 RFKNIQIILLSATLPSNV 166 (169)
T ss_dssp TTTTSEEEEEESSSTHHH
T ss_pred CCCCCcEEEEeeCCChhH
Confidence 666889999999999443
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.84 E-value=7.8e-19 Score=190.32 Aligned_cols=313 Identities=17% Similarity=0.143 Sum_probs=186.2
Q ss_pred ChHHHHHHHHHHhcCC---------CCCcHHHHHHHHHHH----c------CCCEEEEcCCCchHHHHHHHHHh-----c
Q 010563 21 HEKEALVKLLRWHFGH---------AQFRDKQLDAIQAVL----S------GRDCFCLMPTGGGKSMCYQIPAL-----A 76 (507)
Q Consensus 21 ~l~~~l~~~l~~~fg~---------~~~r~~Q~~~i~~i~----~------g~d~lv~apTG~GKTl~~~lp~l-----~ 76 (507)
..++.+++.++...-| .-+|++|..|+..+. + .+..++++|||||||++....+. .
T Consensus 212 ~~~~~ll~~i~~~~~~~~~~~~~~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~ 291 (667)
T TIGR00348 212 LKKERLLDFIRNFIIFDKDTGLVTKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL 291 (667)
T ss_pred cCHHHHHHHHHheEEEECCCCceeeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc
Confidence 3456677777652111 126889999998764 2 24689999999999977654432 2
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhcc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~ 156 (507)
...++|||+|+.+|..|+.+.+..++..... ...+... +...+... +..++++|...+... ....+......
T Consensus 292 ~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~~--~~~s~~~---L~~~l~~~--~~~iivtTiQk~~~~-~~~~~~~~~~~ 363 (667)
T TIGR00348 292 KNPKVFFVVDRRELDYQLMKEFQSLQKDCAE--RIESIAE---LKRLLEKD--DGGIIITTIQKFDKK-LKEEEEKFPVD 363 (667)
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhhCCCCCc--ccCCHHH---HHHHHhCC--CCCEEEEEhHHhhhh-HhhhhhccCCC
Confidence 4568999999999999999999998753211 1111111 12222222 356888887766541 00111111110
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHH-HHHHHhCCCCCEEEEeecCChhhHHHHHHHhCC-CCCeEEeccCC----C-
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCL-QNPLVLKSSFN----R- 229 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l-~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~-~~~~~~~~~~~----~- 229 (507)
..-.+||+||||+... | .+ ..++..+|+..+++|||||-......-...++. ....+...+.. .
T Consensus 364 ~~~~lvIvDEaHrs~~-~--------~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG 434 (667)
T TIGR00348 364 RKEVVVIFDEAHRSQY-G--------ELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDG 434 (667)
T ss_pred CCCEEEEEEcCccccc-h--------HHHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcC
Confidence 1112899999998532 2 22 335567899999999999964311111112221 11122211110 0
Q ss_pred --CceEEEEEeecc------hhh------------------------------------HHHH----HHHHHH---hcCC
Q 010563 230 --PNLFYEVRYKDL------LDD------------------------------------AYAD----LCSVLK---ANGD 258 (507)
Q Consensus 230 --~ni~~~v~~~~~------~~~------------------------------------~~~~----l~~~l~---~~~~ 258 (507)
.++.|....... .+. .... +.+... ...+
T Consensus 435 ~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~ 514 (667)
T TIGR00348 435 LTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFK 514 (667)
T ss_pred CeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhccc
Confidence 111222111000 000 0001 111111 1124
Q ss_pred ccEEEEeccchhHHHHHHHHHhC-----CCceeEecCCCCHH---------------------HHHHHHHHHhc-CCceE
Q 010563 259 TCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDK---------------------ARSSVLDDWIS-SRKQV 311 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~---------------------~R~~~~~~f~~-g~~~V 311 (507)
.+++|+|.++..|..+++.|.+. +..+..++++.+.. ....+.++|++ +.++|
T Consensus 515 ~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~i 594 (667)
T TIGR00348 515 FKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKL 594 (667)
T ss_pred CceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceE
Confidence 68999999999999999998664 23455666654332 22468888976 68899
Q ss_pred EEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCC
Q 010563 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351 (507)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR 351 (507)
||+++.+..|+|.|.+..++...+-++. .++|.+||+.|
T Consensus 595 lIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR 633 (667)
T TIGR00348 595 LIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNR 633 (667)
T ss_pred EEEEcccccccCCCccceEEEecccccc-HHHHHHHHhcc
Confidence 9999999999999999999977766654 68999999999
No 114
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.84 E-value=1.2e-18 Score=194.51 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=110.3
Q ss_pred CCEEEEeecCChh-hHHHHHHHhCCCCCeEE---eccCC-CCceEEEEEe-ec-----chhhHH----HHHHHHHHhcCC
Q 010563 194 VPILALTATAAPK-VQKDVMESLCLQNPLVL---KSSFN-RPNLFYEVRY-KD-----LLDDAY----ADLCSVLKANGD 258 (507)
Q Consensus 194 ~~~i~lSAT~~~~-~~~~i~~~l~~~~~~~~---~~~~~-~~ni~~~v~~-~~-----~~~~~~----~~l~~~l~~~~~ 258 (507)
.++|++|||++.. ....+...+|+.+.... .++++ ..+....+.. .. ..+... +.|.+++.. .+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cC
Confidence 3589999999853 34566788898654322 23343 2222222110 01 112222 233333333 34
Q ss_pred ccEEEEeccchhHHHHHHHHHh----CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCcc--EEEE
Q 010563 259 TCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR--LVCH 332 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~--~VI~ 332 (507)
+++|||++|.+..+.+++.|.. .++.+ +..+.. ..|..++++|++++..||++|+.|++|||+|+.. .||.
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 6899999999999999999975 23333 333333 5789999999999999999999999999999865 6777
Q ss_pred eCCCC------------------------------CHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 333 FNIPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 333 ~~~p~------------------------------s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
..+|. .+..+.|.+||.-|.....-.+++++..
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 77774 1234589999999987655556665543
No 115
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=5.8e-20 Score=182.74 Aligned_cols=338 Identities=17% Similarity=0.130 Sum_probs=222.7
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEecChHHHHHHHHHHHHH
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~-----~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
+...++. +-..++..+|.+++..+.+|+++++.-.|.+||++||++.+.. .....++++|+.++++++.+.++-
T Consensus 275 ~~~~~~~-~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 275 IRSLLNK-NTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HHHHHhc-ccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEE
Confidence 3344444 5667899999999999999999999999999999999987642 456789999999999987544321
Q ss_pred -------cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc
Q 010563 101 -------KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (507)
Q Consensus 101 -------~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (507)
+.-..+-...+.+..+... +. . ...+++|..|.++.+......+.-.+..-.+.++++||+|...-.
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A-~~---R--~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~ 427 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSA-LK---R--IGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP 427 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHH-HH---h--cCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc
Confidence 1111111122222222221 11 1 237889999887766543333222222222567899999987542
Q ss_pred -CCCCHHHHHHHHHHHHhC---CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec--cCCCCceEEEEEeecch-----
Q 010563 174 -GHDFRPSYRKLSSLRNYL---PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRYKDLL----- 242 (507)
Q Consensus 174 -g~~fr~~~~~l~~l~~~~---~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~~~ni~~~v~~~~~~----- 242 (507)
|..-...+++|..+..-| .+.+++-.+||.-..++. .....++.....+.. +.....++..+.+.-.+
T Consensus 428 ~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 428 TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhh
Confidence 221223345555555433 267888888887766643 345556665544432 33333333222221110
Q ss_pred -hhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHh----CCC----ceeEecCCCCHHHHHHHHHHHhcCCceE
Q 010563 243 -DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSA----GGI----SCAAYHAGLNDKARSSVLDDWISSRKQV 311 (507)
Q Consensus 243 -~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~----~g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (507)
+.++.....++.+ ..+-++|-||.+++-|+-+...-++ .|- .+..|.||-..++|+.+......|+..-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 1222222222211 1245799999999999877655443 221 2457999999999999999999999999
Q ss_pred EEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEec--cchHHHHH
Q 010563 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG--MDDRRRME 371 (507)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~--~~d~~~~~ 371 (507)
+|||++++.|||+...+.|++.++|.|+..+.|..|||||-.+++.++.+.. +-|...+.
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~ 648 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMS 648 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhc
Confidence 9999999999999999999999999999999999999999999888766543 44544443
No 116
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=3.4e-19 Score=180.33 Aligned_cols=304 Identities=19% Similarity=0.235 Sum_probs=200.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCe-EEEecChHHHHHHHHHHHHH-cCCceEEec
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGI-VLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~-~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~ 109 (507)
..+++-.+.+.++-..+-+++.+.||+|||. |+|-.. .+++ +-+--|.+--+...+.+... .|++..--.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 3456777788888889999999999999996 777653 3444 66667988777766655543 443321100
Q ss_pred CCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 010563 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (507)
+- .. -+.+..+ ....+-|+|..++ +..+..-..+...+++||||||.-.-- ---.+.-+..+..
T Consensus 343 GY---sI---RFEdcTS--ekTvlKYMTDGmL-----lREfL~epdLasYSViiiDEAHERTL~---TDILfgLvKDIar 406 (902)
T KOG0923|consen 343 GY---SI---RFEDCTS--EKTVLKYMTDGML-----LREFLSEPDLASYSVIIVDEAHERTLH---TDILFGLVKDIAR 406 (902)
T ss_pred ce---EE---EeccccC--cceeeeeecchhH-----HHHHhccccccceeEEEeehhhhhhhh---hhHHHHHHHHHHh
Confidence 00 00 0011111 1233444444433 334455555667899999999974210 1111234556666
Q ss_pred hCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCC--ceEEEEEee-cchhhHHHHHHHHHHhcCCccEEEEec
Q 010563 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP--NLFYEVRYK-DLLDDAYADLCSVLKANGDTCAIVYCL 266 (507)
Q Consensus 190 ~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~--ni~~~v~~~-~~~~~~~~~l~~~l~~~~~~~~IVf~~ 266 (507)
..|+..+++.|||...+-...+ + .+..++..+-.|- .++|.-.+. +..+..+..+..+....+.+-+|||..
T Consensus 407 ~RpdLKllIsSAT~DAekFS~f---F--DdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFlt 481 (902)
T KOG0923|consen 407 FRPDLKLLISSATMDAEKFSAF---F--DDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLT 481 (902)
T ss_pred hCCcceEEeeccccCHHHHHHh---c--cCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEec
Confidence 6689999999999987654433 2 3344444433332 233332221 112222333333333456678999999
Q ss_pred cchhHHHHHHHHHhC----C-----CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCC--
Q 010563 267 ERTTCDELSAYLSAG----G-----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-- 335 (507)
Q Consensus 267 s~~~~~~l~~~L~~~----g-----~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~-- 335 (507)
..++.+...+.|.+. | +-+..+|++|+.+....|.+---.|-.+|++||+++...|-+++|.+||.-+.
T Consensus 482 GQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K 561 (902)
T KOG0923|consen 482 GQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVK 561 (902)
T ss_pred cHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccc
Confidence 998887777777642 2 34688999999999999988888899999999999999999999999996553
Q ss_pred ----------------CCCHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 336 ----------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 336 ----------------p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
|-|-.+-.||.|||||.| ||.|+-+|+..
T Consensus 562 ~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 562 QNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred ccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 347788899999999999 99999999843
No 117
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=181.65 Aligned_cols=154 Identities=18% Similarity=0.230 Sum_probs=99.0
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchHHHH--HHHHHhc---CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCC
Q 010563 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC--YQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~--~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~ 113 (507)
|-.||.+.+..+-.++.++++|||.+|||.+ |.+-... ..+++|++.|+.+|++|........- .......+.+
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF-~~~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARF-DTKTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhh-ccCccccchh
Confidence 5579999999999999999999999999965 2333332 36899999999999998776665531 1111222222
Q ss_pred HHHHHHHHHHhhcCCCcccEEEECcccc----cChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 010563 114 MQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (507)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~tpe~~----~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (507)
. .....++........+++++.||.+ .+|.... ....+++++|+||+|++.+.-.+ .-...+.
T Consensus 591 l--~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q-----~~cerIRyiIfDEVH~iG~~ed~-----l~~Eqll- 657 (1330)
T KOG0949|consen 591 L--LGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQ-----KFCERIRYIIFDEVHLIGNEEDG-----LLWEQLL- 657 (1330)
T ss_pred h--HhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhh-----hhhhcceEEEechhhhccccccc-----hHHHHHH-
Confidence 1 1122233333445789999999954 3321111 11234899999999999774221 1111121
Q ss_pred hCCCCCEEEEeecCChh
Q 010563 190 YLPDVPILALTATAAPK 206 (507)
Q Consensus 190 ~~~~~~~i~lSAT~~~~ 206 (507)
.+-.+|++++|||..+.
T Consensus 658 ~li~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 658 LLIPCPFLVLSATIGNP 674 (1330)
T ss_pred HhcCCCeeEEecccCCH
Confidence 22368999999998764
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=9.3e-18 Score=179.91 Aligned_cols=322 Identities=21% Similarity=0.184 Sum_probs=212.9
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH---
Q 010563 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (507)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~--- 100 (507)
.++.++..|.. +++.|.-.--.+..| -++.|.||.|||+++.+|++. .+..+.|++|+--|+.+..+.+..
T Consensus 72 rEa~~R~lGm~-~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 72 REAGKRVMGMR-HFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred HHHHHHHhCCC-cchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34556667744 456666544444444 489999999999999999864 577899999999999998888776
Q ss_pred -cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc----
Q 010563 101 -KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS---- 172 (507)
Q Consensus 101 -~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~---- 172 (507)
+|+.+..+.+..+..++...+. .+|+|+|.-.+.-......+. ...-...+.++||||+|.++=
T Consensus 149 ~lGl~v~~i~~~~~~~err~~Y~--------~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEAr 220 (913)
T PRK13103 149 FLGLSVGIVTPFQPPEEKRAAYA--------ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEAR 220 (913)
T ss_pred ccCCEEEEECCCCCHHHHHHHhc--------CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccC
Confidence 5899999988888888776664 789999987663322222211 111235689999999999841
Q ss_pred -------cCCCCHHHHHHHHHHHHhC--------------------CC--------------------------------
Q 010563 173 -------WGHDFRPSYRKLSSLRNYL--------------------PD-------------------------------- 193 (507)
Q Consensus 173 -------~g~~fr~~~~~l~~l~~~~--------------------~~-------------------------------- 193 (507)
-.......|..+..+...+ .+
T Consensus 221 tPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~ 300 (913)
T PRK13103 221 TPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYS 300 (913)
T ss_pred CceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccC
Confidence 1011111222111111110 00
Q ss_pred --------------------------------------------------------------------------------
Q 010563 194 -------------------------------------------------------------------------------- 193 (507)
Q Consensus 194 -------------------------------------------------------------------------------- 193 (507)
T Consensus 301 ~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qnf 380 (913)
T PRK13103 301 AHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNY 380 (913)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHH
Confidence
Q ss_pred ----CCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEE---EEeecchhhHHHHHHHHHHh--cCCccEEEE
Q 010563 194 ----VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVY 264 (507)
Q Consensus 194 ----~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf 264 (507)
..+-+||+|+.... ..+.+..++ .++..+.++|.+... ..+.. ...++..+.+-+.. ..+.|+||-
T Consensus 381 Fr~Y~kLsGMTGTa~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~vy~t-~~eK~~Ai~~ei~~~~~~GrPVLVG 455 (913)
T PRK13103 381 FRLYNKLSGMTGTADTEA-FEFRQIYGL---DVVVIPPNKPLARKDFNDLVYLT-AEEKYAAIITDIKECMALGRPVLVG 455 (913)
T ss_pred HHhcchhccCCCCCHHHH-HHHHHHhCC---CEEECCCCCCcccccCCCeEEcC-HHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 02344555553322 223333322 234445555554321 11222 24566666555543 356799999
Q ss_pred eccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcC-CceEEEEeCcccccccCC------------------
Q 010563 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRK------------------ 325 (507)
Q Consensus 265 ~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VLVaT~a~~~GiD~p------------------ 325 (507)
+.|.+..+.++..|++.|++...+++.....+-.-+-+ .| .-.|.|||+++|+|.|+.
T Consensus 456 T~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~ 532 (913)
T PRK13103 456 TATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPE 532 (913)
T ss_pred eCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHH
Confidence 99999999999999999998877777654443333332 34 345999999999999984
Q ss_pred --------------Cc-----cEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchH
Q 010563 326 --------------DV-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (507)
Q Consensus 326 --------------~v-----~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~ 367 (507)
.| =+||-...+.|..---|-.||+||.|.||.+..|++.+|-
T Consensus 533 ~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 533 QIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 12 2688889999999999999999999999999999987763
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.2e-17 Score=164.27 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=121.1
Q ss_pred CCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeec-chhhHHHHHHHHHHhcCCccEEEEeccchhHH
Q 010563 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD-LLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272 (507)
Q Consensus 194 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~-~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~ 272 (507)
.++|.+|||+.+.-.. ..-+ .-...+..+.....-...+++.. ..++.+..+...++ .+.+++|-+-|++.++
T Consensus 387 ~q~i~VSATPg~~E~e---~s~~-~vveQiIRPTGLlDP~ievRp~~~QvdDL~~EI~~r~~--~~eRvLVTtLTKkmAE 460 (663)
T COG0556 387 PQTIYVSATPGDYELE---QSGG-NVVEQIIRPTGLLDPEIEVRPTKGQVDDLLSEIRKRVA--KNERVLVTTLTKKMAE 460 (663)
T ss_pred CCEEEEECCCChHHHH---hccC-ceeEEeecCCCCCCCceeeecCCCcHHHHHHHHHHHHh--cCCeEEEEeehHHHHH
Confidence 3689999999875332 1110 00011111111111122333332 12333343433333 3578999999999999
Q ss_pred HHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCC-----CCHHHHHHHhc
Q 010563 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----KSMEAFYQESG 347 (507)
Q Consensus 273 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p-----~s~~~y~Q~~G 347 (507)
.|.++|.+.|+++..+|++.+.-+|.+++..++.|+++|||.-+.+-.|+|+|.|.+|..+|.. .|-.+.+|-+|
T Consensus 461 dLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIG 540 (663)
T COG0556 461 DLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIG 540 (663)
T ss_pred HHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998865 48899999999
Q ss_pred ccCCCCCCceEEEEecc
Q 010563 348 RAGRDQLPSKSLLYYGM 364 (507)
Q Consensus 348 RagR~g~~~~~i~~~~~ 364 (507)
||.|.- .|.+++|.+.
T Consensus 541 RAARN~-~GkvIlYAD~ 556 (663)
T COG0556 541 RAARNV-NGKVILYADK 556 (663)
T ss_pred HHhhcc-CCeEEEEchh
Confidence 999976 5788777653
No 120
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=3.7e-19 Score=183.18 Aligned_cols=301 Identities=17% Similarity=0.199 Sum_probs=195.5
Q ss_pred HHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----------CCCeEEEecChHHHHHHHHHH----HHHcCCceEEe
Q 010563 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIVLVVSPLIALMENQVIG----LKEKGIAGEFL 108 (507)
Q Consensus 44 ~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~-----------~~~~~lvi~P~~~L~~q~~~~----l~~~gi~~~~~ 108 (507)
++++++|..+.-+++++.||+|||. |+|-+. .++.+=|--|.|--+--.+++ |..+|-.+.+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 4567777777789999999999996 666542 245667777888554443333 33333333322
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 010563 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (507)
-.- -....++.+|.++|..++. ..+..-.-+.+.+.|||||||.-+-...-.-..+.++-.++
T Consensus 340 IRf------------d~ti~e~T~IkFMTDGVLL-----rEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 340 IRF------------DGTIGEDTSIKFMTDGVLL-----REIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLR 402 (1172)
T ss_pred EEe------------ccccCCCceeEEecchHHH-----HHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHH
Confidence 100 0011234566666655443 33444444556889999999986542211122234444555
Q ss_pred HhCC-------CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEee---cchhhHHHHHHHHHHhcCC
Q 010563 189 NYLP-------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGD 258 (507)
Q Consensus 189 ~~~~-------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~---~~~~~~~~~l~~~l~~~~~ 258 (507)
..+. ...+|+||||+.-.....-...+.+..| ++......-.+..++..+ +...+.+...+.+.++.+.
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-likVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP-LIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc-eeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 5432 3468999999865543322233333344 554444333333333322 3345667777777788888
Q ss_pred ccEEEEeccchhHHHHHHHHHhC-----C-C-------------------------------------------------
Q 010563 259 TCAIVYCLERTTCDELSAYLSAG-----G-I------------------------------------------------- 283 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~-----g-~------------------------------------------------- 283 (507)
+.+|||+....++.+|.+.|++. + .
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 99999999999999999999763 0 0
Q ss_pred --------------------------------------------ceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccc
Q 010563 284 --------------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (507)
Q Consensus 284 --------------------------------------------~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~ 319 (507)
-|..+++-|+.+...++.+.--.|..-++|||++++
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 124566777777777777777788888999999999
Q ss_pred ccccCCCccEEEEeCCCC------------------CHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 320 MGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~------------------s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
..+-+|+|++||..+.-+ |-.+--||+|||||.| +|+|+-+|+..
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999999776543 4455689999999999 99999999853
No 121
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=7.3e-17 Score=171.37 Aligned_cols=323 Identities=17% Similarity=0.150 Sum_probs=213.4
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHH---
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK--- 99 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~--- 99 (507)
+.++.++.+|.. +++.|.-.--.+..|+ ++.|.||-|||++..+|+.. .+..|-||+..--|+..-.+.+.
T Consensus 67 vREA~~R~lG~r-~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 67 AREATKRVLGKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred HHHHHHHHhCCC-cCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHH
Confidence 345666777875 6677777665666664 89999999999999999864 45667788888888875444433
Q ss_pred -HcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc---
Q 010563 100 -EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS--- 172 (507)
Q Consensus 100 -~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~--- 172 (507)
-+|+.+...........+...+. .+|.|+|.--++-......+. ...-...+.+.||||+|.++=
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~--------~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEA 215 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYA--------CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEA 215 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhcc--------CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeeccc
Confidence 37999999888877777666553 678899887555433332221 112234588999999998741
Q ss_pred --------cCCCCHHHHHHHHHHHHhCC--------CC------------------------------------------
Q 010563 173 --------WGHDFRPSYRKLSSLRNYLP--------DV------------------------------------------ 194 (507)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~~--------~~------------------------------------------ 194 (507)
-...-...|..+..+...+. ..
T Consensus 216 rTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~ 295 (925)
T PRK12903 216 KTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHK 295 (925)
T ss_pred CCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHH
Confidence 11111123333333222211 01
Q ss_pred -------------------------------------------------------------------CEEEEeecCChhh
Q 010563 195 -------------------------------------------------------------------PILALTATAAPKV 207 (507)
Q Consensus 195 -------------------------------------------------------------------~~i~lSAT~~~~~ 207 (507)
++-+||+|+....
T Consensus 296 lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~ 375 (925)
T PRK12903 296 VMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEE 375 (925)
T ss_pred HHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHH
Confidence 2445555554322
Q ss_pred HHHHHHHhCCCCCeEEeccCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCC
Q 010563 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (507)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g 282 (507)
..+.+..++ .++..+.++|.+.... .+. ....++..+.+.+.. ..+.|+||.|.|.+.++.++..|.+.|
T Consensus 376 -~Ef~~iY~l---~Vv~IPTnkP~~R~D~~d~iy~-t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~g 450 (925)
T PRK12903 376 -QEFIDIYNM---RVNVVPTNKPVIRKDEPDSIFG-TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEAN 450 (925)
T ss_pred -HHHHHHhCC---CEEECCCCCCeeeeeCCCcEEE-cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 223333322 3444555666554332 112 124556555554442 356799999999999999999999999
Q ss_pred CceeEecCCCCHHHHHHHHHHHhcC-CceEEEEeCcccccccCCCcc--------EEEEeCCCCCHHHHHHHhcccCCCC
Q 010563 283 ISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQ 353 (507)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g-~~~VLVaT~a~~~GiD~p~v~--------~VI~~~~p~s~~~y~Q~~GRagR~g 353 (507)
++...+++.-...+-.-+- ..| .-.|.|||+++|+|.|+.--. +||....|.|..---|..||+||.|
T Consensus 451 i~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG 527 (925)
T PRK12903 451 IPHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG 527 (925)
T ss_pred CCceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC
Confidence 9998888864433322222 345 456999999999999986322 8999999999999999999999999
Q ss_pred CCceEEEEeccchH
Q 010563 354 LPSKSLLYYGMDDR 367 (507)
Q Consensus 354 ~~~~~i~~~~~~d~ 367 (507)
.||.+..|.+.+|.
T Consensus 528 DpGss~f~lSLeD~ 541 (925)
T PRK12903 528 DVGESRFFISLDDQ 541 (925)
T ss_pred CCCcceEEEecchH
Confidence 99999999987763
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=1.6e-19 Score=188.49 Aligned_cols=292 Identities=20% Similarity=0.219 Sum_probs=176.6
Q ss_pred CCCcHHHHHHHHHHH----cCC-CEEEEcCCCchHHHHHH--HHHhc---CCCeEEEecChHHHHHHHHHHHHHcCCceE
Q 010563 37 AQFRDKQLDAIQAVL----SGR-DCFCLMPTGGGKSMCYQ--IPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~----~g~-d~lv~apTG~GKTl~~~--lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~ 106 (507)
..+|.+|..||..+. .|+ .++++|+||+|||.+++ +-.|. ...++|+++-+.+|..|....+..+-....
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 468999999997765 453 59999999999995432 23333 356899999999999999988888633222
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHH-HHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 010563 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (507)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~-~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (507)
..+.... ..+..+.+|.+.|.-.+....-.. ........+.+++|||||||+= .|..-.
T Consensus 244 ~~n~i~~-----------~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---------i~~~~~ 303 (875)
T COG4096 244 KMNKIED-----------KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---------IYSEWS 303 (875)
T ss_pred ceeeeec-----------ccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---------HHhhhH
Confidence 2211111 111124677776665443211110 1112233455899999999973 233334
Q ss_pred HHHHhCCCCCEEEEeecCChhhHHHHHHHh-CCC------------------CCeEEeccCCCCceEE------------
Q 010563 186 SLRNYLPDVPILALTATAAPKVQKDVMESL-CLQ------------------NPLVLKSSFNRPNLFY------------ 234 (507)
Q Consensus 186 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l-~~~------------------~~~~~~~~~~~~ni~~------------ 234 (507)
.+...+... .+++|||+......+-...+ |.+ ++..+...+.+.-+.+
T Consensus 304 ~I~dYFdA~-~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 304 SILDYFDAA-TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH-HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 444444333 45559998775433323332 110 0111111111111111
Q ss_pred ---------EEEee-------cchhhHHHHHHHHHHh--cC--CccEEEEeccchhHHHHHHHHHhC-----CCceeEec
Q 010563 235 ---------EVRYK-------DLLDDAYADLCSVLKA--NG--DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYH 289 (507)
Q Consensus 235 ---------~v~~~-------~~~~~~~~~l~~~l~~--~~--~~~~IVf~~s~~~~~~l~~~L~~~-----g~~~~~~h 289 (507)
..... ...+.....+.+.++. .+ .+++||||.+..+|+.+.+.|.+. |--+..+.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 11100 0011223345555555 22 468999999999999999999865 22344555
Q ss_pred CCCCHHHHHHHHHHHhc-C-CceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCC
Q 010563 290 AGLNDKARSSVLDDWIS-S-RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351 (507)
Q Consensus 290 ~~l~~~~R~~~~~~f~~-g-~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR 351 (507)
++-... +..+..|.. . --+|.|+.+++..|||+|.|..+|.+..-.|...|.|++||+-|
T Consensus 463 ~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 463 GDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred ccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccc
Confidence 544332 333555554 3 34688888999999999999999999999999999999999999
No 123
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=7.2e-19 Score=178.30 Aligned_cols=299 Identities=15% Similarity=0.176 Sum_probs=192.5
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh------cCCCeEEEecChHHHHHHHHHHHHH-cCCceEEecCC
Q 010563 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSST 111 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l------~~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~~~ 111 (507)
....+.+.+..+-.++-+++++.||||||. |+|-. ...|.+-+--|.+.-+...+.++.. .|.....--
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~V-- 432 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTV-- 432 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccccc--
Confidence 345667777777778889999999999996 45442 2466677777999888777776655 432211000
Q ss_pred CCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC
Q 010563 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191 (507)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~ 191 (507)
.+.. .+.+.- .+...|-|+|..++........ .+.+.+.||+||||.-+- + ---.+.-|..+....
T Consensus 433 -GYsI---RFEdvT--~~~T~IkymTDGiLLrEsL~d~-----~L~kYSviImDEAHERsl-N--tDilfGllk~~larR 498 (1042)
T KOG0924|consen 433 -GYSI---RFEDVT--SEDTKIKYMTDGILLRESLKDR-----DLDKYSVIIMDEAHERSL-N--TDILFGLLKKVLARR 498 (1042)
T ss_pred -ceEE---EeeecC--CCceeEEEeccchHHHHHhhhh-----hhhheeEEEechhhhccc-c--hHHHHHHHHHHHHhh
Confidence 0000 001111 1346777777776654433222 234478999999998653 1 111223344455555
Q ss_pred CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEee---cchhhHHHH-HHHHH---HhcCCccEEEE
Q 010563 192 PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYAD-LCSVL---KANGDTCAIVY 264 (507)
Q Consensus 192 ~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~---~~~~~~~~~-l~~~l---~~~~~~~~IVf 264 (507)
.+..+|..|||+...... .++| .-|.... |.-.|.|... ...++.++. +...+ ...+.+-++||
T Consensus 499 rdlKliVtSATm~a~kf~---nfFg-n~p~f~I-----pGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIf 569 (1042)
T KOG0924|consen 499 RDLKLIVTSATMDAQKFS---NFFG-NCPQFTI-----PGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIF 569 (1042)
T ss_pred ccceEEEeeccccHHHHH---HHhC-CCceeee-----cCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEe
Confidence 689999999999766443 4443 2232221 1112222211 111222221 22222 22345679999
Q ss_pred eccchhHHHHHHHHH----hC------CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeC
Q 010563 265 CLERTTCDELSAYLS----AG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (507)
Q Consensus 265 ~~s~~~~~~l~~~L~----~~------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (507)
....+..+-....++ +. ++.+..+++.|+..-..++.+.-..|-.++||||++++..+-+|++++||..+
T Consensus 570 mtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~G 649 (1042)
T KOG0924|consen 570 MTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTG 649 (1042)
T ss_pred cCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecC
Confidence 998887665555544 32 56789999999999988888877788899999999999999999999999765
Q ss_pred C------------------CCCHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 335 I------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 335 ~------------------p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
. |-|-.+--||.|||||.| +|.|+-+|+.+
T Consensus 650 y~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 650 YCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 3 447788899999999999 99999999864
No 124
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.80 E-value=3.6e-18 Score=170.24 Aligned_cols=282 Identities=19% Similarity=0.228 Sum_probs=188.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCccc
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (507)
.+-++.++||.||||.-+ +--+......++..|++-|+.+..++++..|+++..+.+. ++.. ....+ ....
T Consensus 191 RkIi~H~GPTNSGKTy~A-Lqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGe----E~~~---~~~~~-~~a~ 261 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRA-LQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGE----ERRF---VLDNG-NPAQ 261 (700)
T ss_pred heEEEEeCCCCCchhHHH-HHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccc----eeee---cCCCC-Cccc
Confidence 345778899999999653 3334456678999999999999999999999999876643 2211 11222 2467
Q ss_pred EEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc--cCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHH
Q 010563 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (507)
Q Consensus 133 il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~--~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~ 210 (507)
.+-+|-|++.+.. .+++.||||++.|.+ .|+.+-.++..+ ... . +-++ + .+.+..-
T Consensus 262 hvScTVEM~sv~~------------~yeVAViDEIQmm~Dp~RGwAWTrALLGl--~Ad---E--iHLC-G--epsvldl 319 (700)
T KOG0953|consen 262 HVSCTVEMVSVNT------------PYEVAVIDEIQMMRDPSRGWAWTRALLGL--AAD---E--IHLC-G--EPSVLDL 319 (700)
T ss_pred ceEEEEEEeecCC------------ceEEEEehhHHhhcCcccchHHHHHHHhh--hhh---h--hhcc-C--CchHHHH
Confidence 8889999886642 278999999999976 343232222211 111 1 1111 1 1233343
Q ss_pred HHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCc-eeEec
Q 010563 211 VMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYH 289 (507)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~-~~~~h 289 (507)
+.+.+.+....+....+.|-+-. ...+.+..-+.....+-+ |.|-|++..-.+...+.+.|.. ++.++
T Consensus 320 V~~i~k~TGd~vev~~YeRl~pL----------~v~~~~~~sl~nlk~GDC-vV~FSkk~I~~~k~kIE~~g~~k~aVIY 388 (700)
T KOG0953|consen 320 VRKILKMTGDDVEVREYERLSPL----------VVEETALGSLSNLKPGDC-VVAFSKKDIFTVKKKIEKAGNHKCAVIY 388 (700)
T ss_pred HHHHHhhcCCeeEEEeecccCcc----------eehhhhhhhhccCCCCCe-EEEeehhhHHHHHHHHHHhcCcceEEEe
Confidence 34444443333332222221110 011122333333333333 4466788899999999888765 99999
Q ss_pred CCCCHHHHHHHHHHHhc--CCceEEEEeCcccccccCCCccEEEEeCCC---------CCHHHHHHHhcccCCCCC--Cc
Q 010563 290 AGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNIP---------KSMEAFYQESGRAGRDQL--PS 356 (507)
Q Consensus 290 ~~l~~~~R~~~~~~f~~--g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p---------~s~~~y~Q~~GRagR~g~--~~ 356 (507)
|+++++.|.+-...|.+ ++++|||||+|+|||+|+ +++.||.+++- -+..+..|..|||||.|. +.
T Consensus 389 GsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~ 467 (700)
T KOG0953|consen 389 GSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQ 467 (700)
T ss_pred cCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcC
Confidence 99999999999999996 899999999999999999 69999998865 378899999999999874 22
Q ss_pred eEEEEeccchHHHHHHHHHhc
Q 010563 357 KSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 357 ~~i~~~~~~d~~~~~~~~~~~ 377 (507)
--++-+..+|...++.+++..
T Consensus 468 G~vTtl~~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 468 GEVTTLHSEDLKLLKRILKRP 488 (700)
T ss_pred ceEEEeeHhhHHHHHHHHhCC
Confidence 334445567888888888754
No 125
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.78 E-value=2.8e-18 Score=147.88 Aligned_cols=118 Identities=30% Similarity=0.477 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhc--CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccccc
Q 010563 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (507)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (507)
.+...+.+++... .++++||||++.+.++.+++.|.+.+..+..+||+++..+|..+++.|.+|...+|++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5777777777765 36789999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEE
Q 010563 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (507)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~ 361 (507)
+|+|.++.||++++|++...|.|++||++|.|+.|.+++|
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998877654
No 126
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.78 E-value=1.2e-17 Score=179.51 Aligned_cols=310 Identities=21% Similarity=0.249 Sum_probs=221.7
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchHH---HHHHH---HHhcCCCeEEEecChHHHHHHHHHHHHH-cCCce
Q 010563 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKS---MCYQI---PALAKPGIVLVVSPLIALMENQVIGLKE-KGIAG 105 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~----~g~d~lv~apTG~GKT---l~~~l---p~l~~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~ 105 (507)
.++|.+|.+.+.+++ .++++|+.-..|-||| .+|+- -...-.|..|||+|+-.+. .|.+.+.. ..+.+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHhhhce
Confidence 679999999998876 6789999999999999 33433 3334578999999997665 45555544 46777
Q ss_pred EEecCCCCHHHHHHHHHHhhcC---CCcccEEEECcccccCh-hhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH
Q 010563 106 EFLSSTQTMQVKTKIYEDLDSG---KPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (507)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~il~~tpe~~~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~ 181 (507)
+..++........+.+...... .-.+.++++|.|++... .++. . -.+.+++|||||++.+..
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~---~----i~w~~~~vDeahrLkN~~------- 513 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELS---K----IPWRYLLVDEAHRLKNDE------- 513 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhc---c----CCcceeeecHHhhcCchH-------
Confidence 7777776665555555544433 23578899999977543 2222 2 237899999999987532
Q ss_pred HHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc------CC---------------------------
Q 010563 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN--------------------------- 228 (507)
Q Consensus 182 ~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~~--------------------------- 228 (507)
..|-.....+.-...+++|+|+-++..+.+...+.+..|..+... ++
T Consensus 514 ~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 233333444445568999999999888888888876655443210 00
Q ss_pred -----CCceEEEEEeecch----------------------------------------------h----hHH------H
Q 010563 229 -----RPNLFYEVRYKDLL----------------------------------------------D----DAY------A 247 (507)
Q Consensus 229 -----~~ni~~~v~~~~~~----------------------------------------------~----~~~------~ 247 (507)
.+.-.+.|...+.. + ..+ .
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 00001111100000 0 001 1
Q ss_pred HHHHHHHh---------------cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhc---CCc
Q 010563 248 DLCSVLKA---------------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRK 309 (507)
Q Consensus 248 ~l~~~l~~---------------~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---g~~ 309 (507)
.|..+++. ..+.++|||-.-.....-|+++|..++++.-.+.|.+..+.|++.++.|.. ...
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 22222222 245789999999999999999999999999999999999999999999994 456
Q ss_pred eEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEE
Q 010563 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (507)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~ 361 (507)
-.|++|-|.|.|||+...+.||.||..+++..-+|...||.|-|+...+-+|
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVY 805 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVY 805 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEE
Confidence 7899999999999999999999999999999999999999999997765544
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.78 E-value=1.3e-16 Score=175.94 Aligned_cols=168 Identities=13% Similarity=0.069 Sum_probs=105.1
Q ss_pred CEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEee--c-----chhhHHHHHHHHHHh--cCCccEEEEe
Q 010563 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--D-----LLDDAYADLCSVLKA--NGDTCAIVYC 265 (507)
Q Consensus 195 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~--~-----~~~~~~~~l~~~l~~--~~~~~~IVf~ 265 (507)
++|++|||++-.-..++...+|+........++...+-...+... + ..+...+.+.+.+.. ..+++++|++
T Consensus 575 ~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLF 654 (820)
T PRK07246 575 KTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLF 654 (820)
T ss_pred eEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 579999999721111367888886543332222221111111111 1 112222233332211 3456899999
Q ss_pred ccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCC--CccEEEEeCCCC------
Q 010563 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--DVRLVCHFNIPK------ 337 (507)
Q Consensus 266 ~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p--~v~~VI~~~~p~------ 337 (507)
+|.+..+.+++.|....+.+ ...|.-. .|..++++|++++..||++|..|.+|||+| +...||...+|.
T Consensus 655 tS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP 731 (820)
T PRK07246 655 NSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDP 731 (820)
T ss_pred CcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCH
Confidence 99999999999997665444 4444222 256689999999889999999999999997 355667777663
Q ss_pred ------------------------CHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 338 ------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 338 ------------------------s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
-+..+.|-+||.-|....--.++++++.
T Consensus 732 ~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 732 FVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred HHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 2344589999999987644455555544
No 128
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=2.7e-17 Score=170.15 Aligned_cols=309 Identities=17% Similarity=0.139 Sum_probs=212.4
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEcCCCchHHH--HHHHHHhcC----CCeEEEecChHHHHHHHHHHHHHcC--Cc
Q 010563 37 AQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSM--CYQIPALAK----PGIVLVVSPLIALMENQVIGLKEKG--IA 104 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~----g~d~lv~apTG~GKTl--~~~lp~l~~----~~~~lvi~P~~~L~~q~~~~l~~~g--i~ 104 (507)
..+.++|++.++++.+ +...|+--..|-|||+ +..|.+|.. .+.+|||||. .++.||+.+|.... .+
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFR 282 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceE
Confidence 4688999999999863 4556777899999993 334555543 3689999998 77899999999965 45
Q ss_pred eEEecCCCCHHHH---------HHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC
Q 010563 105 GEFLSSTQTMQVK---------TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (507)
Q Consensus 105 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~ 175 (507)
+.++++..+.... ..+... .....-.++++|.+.+.. .........++++|+||.|.|-+..
T Consensus 283 v~ilh~t~s~~r~~~~~~~~~~~~~L~r--~~~~~~~ilitty~~~r~------~~d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 283 VFILHGTGSGARYDASHSSHKKDKLLIR--KVATDGGILITTYDGFRI------QGDDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred EEEEecCCcccccccchhhhhhhhhhee--eecccCcEEEEehhhhcc------cCcccccccccEEEecCcccccCCc-
Confidence 6666665542111 110100 111123355555554432 2222333448999999999987655
Q ss_pred CCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEe------cc-----------------------
Q 010563 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK------SS----------------------- 226 (507)
Q Consensus 176 ~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~------~~----------------------- 226 (507)
..+......++....+.||+|+-++....++..+.+..|-.+. ..
T Consensus 354 ------s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ayk 427 (923)
T KOG0387|consen 354 ------SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYK 427 (923)
T ss_pred ------cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHH
Confidence 5666667777888899999999877666666544332221110 00
Q ss_pred ---------------------------------------------------------------------------CCCCc
Q 010563 227 ---------------------------------------------------------------------------FNRPN 231 (507)
Q Consensus 227 ---------------------------------------------------------------------------~~~~n 231 (507)
.+.|.
T Consensus 428 ca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPd 507 (923)
T KOG0387|consen 428 CAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPD 507 (923)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcc
Confidence 00111
Q ss_pred eEEEE---Ee--ecc-----hhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHH-hCCCceeEecCCCCHHHHH
Q 010563 232 LFYEV---RY--KDL-----LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARS 298 (507)
Q Consensus 232 i~~~v---~~--~~~-----~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~-~~g~~~~~~h~~l~~~~R~ 298 (507)
++-.. .. .+. ...+.+.+..++.. ..+.++|.|..++....-+...|. ..|+....+.|..+...|.
T Consensus 508 ll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~ 587 (923)
T KOG0387|consen 508 LLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQ 587 (923)
T ss_pred cccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhh
Confidence 11000 00 000 01233444444432 234589999999999999999998 5799999999999999999
Q ss_pred HHHHHHhcCCc-e-EEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEE
Q 010563 299 SVLDDWISSRK-Q-VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (507)
Q Consensus 299 ~~~~~f~~g~~-~-VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~ 361 (507)
.+.++|.+++. . .|++|.+.|.|+|+-..+-||.||+.++++.-.|..-||.|-|+...+++|
T Consensus 588 ~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 588 KLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred HHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 99999997763 3 588999999999999999999999999999999999999999998877766
No 129
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.77 E-value=3.6e-17 Score=173.22 Aligned_cols=311 Identities=19% Similarity=0.123 Sum_probs=193.0
Q ss_pred CCcHHHHHHHHHHHc---C-------CCEEEEcCCCchHHHH---HHHHHhcC--C-----CeEEEecChHHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVLS---G-------RDCFCLMPTGGGKSMC---YQIPALAK--P-----GIVLVVSPLIALMENQVIG 97 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~---g-------~d~lv~apTG~GKTl~---~~lp~l~~--~-----~~~lvi~P~~~L~~q~~~~ 97 (507)
.+||+|.+.+..+.+ | ..+|+.-..|+|||+- |+...+.. . .+.|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 589999999988753 2 2356666899999953 23333332 3 578999998 888999999
Q ss_pred HHHcCCc----eEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc
Q 010563 98 LKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (507)
Q Consensus 98 l~~~gi~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (507)
+.+..+. ...+.+.... .......-+..+ --.+.+|..+.+..-.....+......++++|+||.|..-+-
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~----~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLG----YKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhh----hhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccch
Confidence 9985442 2222222221 000000000001 112333434444333333344444566999999999997542
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccC------CC------------------
Q 010563 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------NR------------------ 229 (507)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~------~~------------------ 229 (507)
. ..+-.......-...|+||+|+-++...+++..+++-+|.++.... ..
T Consensus 392 ~-------s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~ 464 (776)
T KOG0390|consen 392 D-------SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRERE 464 (776)
T ss_pred h-------hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhH
Confidence 2 3333333344455689999999999999999988887776553210 00
Q ss_pred --------------------------CceE-EEEEeecch--hhHHHH--------------------------------
Q 010563 230 --------------------------PNLF-YEVRYKDLL--DDAYAD-------------------------------- 248 (507)
Q Consensus 230 --------------------------~ni~-~~v~~~~~~--~~~~~~-------------------------------- 248 (507)
|..+ +.+...... ...+..
T Consensus 465 ~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 465 ERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred HHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhc
Confidence 0001 111110000 011111
Q ss_pred --------------------------------------HHHHHHhcCCccEEEE----eccchhHHHHHHHHHhCCCcee
Q 010563 249 --------------------------------------LCSVLKANGDTCAIVY----CLERTTCDELSAYLSAGGISCA 286 (507)
Q Consensus 249 --------------------------------------l~~~l~~~~~~~~IVf----~~s~~~~~~l~~~L~~~g~~~~ 286 (507)
|..++.. ...++++| .|.+...+.+...++-+|+.+.
T Consensus 545 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~-~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~ 623 (776)
T KOG0390|consen 545 LCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV-IREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVL 623 (776)
T ss_pred ccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH-HhhhcceEEEEeccHHHHHHHHHHHHhhcCceEE
Confidence 1111100 00112222 2334444444455555699999
Q ss_pred EecCCCCHHHHHHHHHHHhcCC---ceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEe
Q 010563 287 AYHAGLNDKARSSVLDDWISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (507)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~---~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~ 362 (507)
.+||.|+..+|+.+.+.|.+.. .-.|.+|.|.|.||++=+...||.+|++++++.-.|.++||.|+||.-.|++|-
T Consensus 624 rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 624 RLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred EEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 9999999999999999999643 335777899999999999999999999999999999999999999999888873
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.76 E-value=4.8e-16 Score=166.16 Aligned_cols=281 Identities=16% Similarity=0.114 Sum_probs=178.9
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH--
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~-- 100 (507)
+.++.++.+|.. +++.|.-..-.+ .+.-++.|.||-|||+++.+|+.. .+..|-||++...|+..-.+.+..
T Consensus 65 vrEa~~R~lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 65 TREASFRTLGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HHHHHHHHhCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 445667777876 667777655444 444689999999999999999863 467899999999999877766544
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH---hhhccCCccEEEEecccccccc--
Q 010563 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW-- 173 (507)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~~-- 173 (507)
+|+.+..+..+.+..++...+. .+|.|+|.--++-......+. ...-...+.+.||||+|.++=.
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeA 213 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYL--------KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEA 213 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcC--------CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccC
Confidence 7999999888888777766553 678999886555433333321 1112345889999999987410
Q ss_pred -------C----------------------CCCH------------HHHHHHHHH---------------------HHhC
Q 010563 174 -------G----------------------HDFR------------PSYRKLSSL---------------------RNYL 191 (507)
Q Consensus 174 -------g----------------------~~fr------------~~~~~l~~l---------------------~~~~ 191 (507)
| .+|. ..+..+..+ +..+
T Consensus 214 rTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~ 293 (870)
T CHL00122 214 RTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKE 293 (870)
T ss_pred CCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHH
Confidence 0 0110 001111110 0000
Q ss_pred ------------------------------------------------C----------------CCCEEEEeecCChhh
Q 010563 192 ------------------------------------------------P----------------DVPILALTATAAPKV 207 (507)
Q Consensus 192 ------------------------------------------------~----------------~~~~i~lSAT~~~~~ 207 (507)
+ -..+.+||+|+...
T Consensus 294 lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te- 372 (870)
T CHL00122 294 LFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTE- 372 (870)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHH-
Confidence 0 01366777777543
Q ss_pred HHHHHHHhCCCCCeEEeccCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCC
Q 010563 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (507)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g 282 (507)
...+.+..++ .++..+.++|...... .+. ...+++..+.+-+.. ..+.|+||-|.|.+..+.++..|.+.|
T Consensus 373 ~~Ef~~iY~l---~vv~IPtnkp~~R~d~~d~v~~-t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~g 448 (870)
T CHL00122 373 ELEFEKIYNL---EVVCIPTHRPMLRKDLPDLIYK-DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYR 448 (870)
T ss_pred HHHHHHHhCC---CEEECCCCCCccceeCCCeEEe-CHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcC
Confidence 3344444433 3455566666654332 112 223455555444322 356799999999999999999999999
Q ss_pred CceeEecCCCC--HHHHHHHHHHHhcC-CceEEEEeCcccccccCC
Q 010563 283 ISCAAYHAGLN--DKARSSVLDDWISS-RKQVVVATVAFGMGIDRK 325 (507)
Q Consensus 283 ~~~~~~h~~l~--~~~R~~~~~~f~~g-~~~VLVaT~a~~~GiD~p 325 (507)
++...+++.-. ..+-.-+-+ .| .-.|.|||+++|+|.|+.
T Consensus 449 i~h~vLNAk~~~~~~EA~IIA~---AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 449 LPHQLLNAKPENVRRESEIVAQ---AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CccceeeCCCccchhHHHHHHh---cCCCCcEEEeccccCCCcCee
Confidence 99999998642 333333322 33 345999999999998863
No 131
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.76 E-value=2.1e-18 Score=134.71 Aligned_cols=78 Identities=35% Similarity=0.520 Sum_probs=75.7
Q ss_pred HHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCC
Q 010563 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (507)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g 353 (507)
++|+..|+.+..+||+++.++|..+++.|.+++..|||||+++++|||+|++++||++++|+|+..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999987
No 132
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.74 E-value=1.4e-16 Score=164.69 Aligned_cols=317 Identities=19% Similarity=0.176 Sum_probs=224.9
Q ss_pred CcHHHHHHHHHHH----cCCCEEEEcCCCchHHHH--HHHHHhc---CCCeEEEecChHHHHHHHHHHHHHcCCceEEec
Q 010563 39 FRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMC--YQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (507)
Q Consensus 39 ~r~~Q~~~i~~i~----~g~d~lv~apTG~GKTl~--~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (507)
+.++|.-.+.++. .+-+.|+.-..|-|||.- ..+..|. .+|.-|||+|.-.| +.|.+++.++.-...+..
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl~Ve~ 478 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSLKVEP 478 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCceEEEe
Confidence 8899999998865 344678888999999932 2222232 36788999999666 789999999876655555
Q ss_pred CCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 010563 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (507)
-..+..++.++...+..+...++++++|..++.+..--..+ ....+++++|+||+|.+.+.+. .-|..|-.+
T Consensus 479 YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsf---lk~~~~n~viyDEgHmLKN~~S---eRy~~LM~I-- 550 (941)
T KOG0389|consen 479 YYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSF---LKNQKFNYVIYDEGHMLKNRTS---ERYKHLMSI-- 550 (941)
T ss_pred ccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHH---HHhccccEEEecchhhhhccch---HHHHHhccc--
Confidence 55666888888889999888999999999988764422222 2233489999999999988653 224444333
Q ss_pred hCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC-----------------------------------------
Q 010563 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN----------------------------------------- 228 (507)
Q Consensus 190 ~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~----------------------------------------- 228 (507)
+....++||+|+-.+...+++..|.+--|.++..+..
T Consensus 551 --~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~ 628 (941)
T KOG0389|consen 551 --NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRL 628 (941)
T ss_pred --cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445899999997776665555544432322211000
Q ss_pred -----------CCceEEEEEe----------------------ec----c---------------------h--------
Q 010563 229 -----------RPNLFYEVRY----------------------KD----L---------------------L-------- 242 (507)
Q Consensus 229 -----------~~ni~~~v~~----------------------~~----~---------------------~-------- 242 (507)
...+.|.-.. .+ . .
T Consensus 629 K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ma 708 (941)
T KOG0389|consen 629 KSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMA 708 (941)
T ss_pred HHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHH
Confidence 0000000000 00 0 0
Q ss_pred ---------------------------------------------------hhHHHHHHHHHHh--cCCccEEEEeccch
Q 010563 243 ---------------------------------------------------DDAYADLCSVLKA--NGDTCAIVYCLERT 269 (507)
Q Consensus 243 ---------------------------------------------------~~~~~~l~~~l~~--~~~~~~IVf~~s~~ 269 (507)
..++..|..+|.+ ..+.+++||-....
T Consensus 709 k~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTq 788 (941)
T KOG0389|consen 709 KRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQ 788 (941)
T ss_pred HHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHH
Confidence 0233334444432 23578999999999
Q ss_pred hHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCC-c-eEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhc
Q 010563 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-K-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 347 (507)
Q Consensus 270 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~-~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~G 347 (507)
...-|...|.-.++....+.|...-.+|+.++..|...+ + -.|++|.|.|.|||+...+.||.+|+..++-.-.|.--
T Consensus 789 mLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAED 868 (941)
T KOG0389|consen 789 MLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAED 868 (941)
T ss_pred HHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHH
Confidence 999999999999999999999999999999999998654 3 35899999999999999999999999999999999999
Q ss_pred ccCCCCCCceE--EEEeccch
Q 010563 348 RAGRDQLPSKS--LLYYGMDD 366 (507)
Q Consensus 348 RagR~g~~~~~--i~~~~~~d 366 (507)
||.|.|+...+ +-+++.+-
T Consensus 869 RcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 869 RCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred HHHhhCCcceeEEEEEEecCc
Confidence 99999985544 34455543
No 133
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.73 E-value=1.9e-16 Score=170.53 Aligned_cols=304 Identities=17% Similarity=0.181 Sum_probs=198.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh--c----C--CCeEEEecChHHHHHHHHHHHHH-c----CCce
Q 010563 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--A----K--PGIVLVVSPLIALMENQVIGLKE-K----GIAG 105 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l--~----~--~~~~lvi~P~~~L~~q~~~~l~~-~----gi~~ 105 (507)
....+.++++++.+.+.+++.+.||+|||. |+|.. . . ...+++--|.|--+-..+++... . |-.+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 456888899999999999999999999996 44432 1 1 33566667887655555555443 2 2111
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 010563 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (507)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (507)
.+--.. . .......+++|+|..++ +..+........+..+|+||+|.-+... ||-- ..+.
T Consensus 252 GYqvrl---------~---~~~s~~t~L~fcTtGvL-----Lr~L~~~~~l~~vthiivDEVHER~i~~-DflL--i~lk 311 (924)
T KOG0920|consen 252 GYQVRL---------E---SKRSRETRLLFCTTGVL-----LRRLQSDPTLSGVTHIIVDEVHERSINT-DFLL--ILLK 311 (924)
T ss_pred eEEEee---------e---cccCCceeEEEecHHHH-----HHHhccCcccccCceeeeeeEEEccCCc-ccHH--HHHH
Confidence 111000 0 01111256666655433 3445555556678999999999976533 3432 3345
Q ss_pred HHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCce-------------------EEEEE---------
Q 010563 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL-------------------FYEVR--------- 237 (507)
Q Consensus 186 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni-------------------~~~v~--------- 237 (507)
.+....|+.++|+||||...+...+.+ + ..|.+...+..-|-. .+...
T Consensus 312 ~lL~~~p~LkvILMSAT~dae~fs~YF---~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (924)
T KOG0920|consen 312 DLLPRNPDLKVILMSATLDAELFSDYF---G-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLAR 387 (924)
T ss_pred HHhhhCCCceEEEeeeecchHHHHHHh---C-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccccc
Confidence 566677999999999999865544332 2 222222222111100 00000
Q ss_pred ----eecchhhHHHHHHHHH-HhcCCccEEEEeccchhHHHHHHHHHhC-------CCceeEecCCCCHHHHHHHHHHHh
Q 010563 238 ----YKDLLDDAYADLCSVL-KANGDTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWI 305 (507)
Q Consensus 238 ----~~~~~~~~~~~l~~~l-~~~~~~~~IVf~~s~~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~ 305 (507)
..+..-+.+..+...+ .....+.+|||.+...+...+.+.|... .+-+..+|+.|+..+.+.+...--
T Consensus 388 ~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp 467 (924)
T KOG0920|consen 388 LKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPP 467 (924)
T ss_pred chhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCC
Confidence 0001112233333333 2334678999999999999999999752 245788999999999999999888
Q ss_pred cCCceEEEEeCcccccccCCCccEEEEeCCCC------------------CHHHHHHHhcccCCCCCCceEEEEeccchH
Q 010563 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (507)
Q Consensus 306 ~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~------------------s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~ 367 (507)
.|..+||+||+.++..|-++||-+||..+.-+ |...-.||.|||||.- +|.|+.+|+....
T Consensus 468 ~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~-~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 468 KGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR-PGICYHLYTRSRY 546 (924)
T ss_pred CCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc-CCeeEEeechhhh
Confidence 99999999999999999999999999655332 5566799999999976 8999999987654
Q ss_pred HH
Q 010563 368 RR 369 (507)
Q Consensus 368 ~~ 369 (507)
..
T Consensus 547 ~~ 548 (924)
T KOG0920|consen 547 EK 548 (924)
T ss_pred hh
Confidence 43
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=4.2e-15 Score=166.92 Aligned_cols=170 Identities=16% Similarity=0.190 Sum_probs=110.4
Q ss_pred CEEEEeecCChh-hHHHHHHHhCCCCC----eEEeccCCCCceEEEEEeecc-------hhhHHHHHH----HHHHhcCC
Q 010563 195 PILALTATAAPK-VQKDVMESLCLQNP----LVLKSSFNRPNLFYEVRYKDL-------LDDAYADLC----SVLKANGD 258 (507)
Q Consensus 195 ~~i~lSAT~~~~-~~~~i~~~l~~~~~----~~~~~~~~~~ni~~~v~~~~~-------~~~~~~~l~----~~l~~~~~ 258 (507)
++|++|||++.. ....+...+|+.+. ..+.++|+..+-...+.+.+. .+...+.+. +++.. .+
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~-~~ 752 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA-TK 752 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh-CC
Confidence 578999998753 33455678888642 233344543222111111111 122223333 33333 34
Q ss_pred ccEEEEeccchhHHHHHHHHHhCCC--ceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCC--ccEEEEeC
Q 010563 259 TCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD--VRLVCHFN 334 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~--v~~VI~~~ 334 (507)
++++|+++|.+..+.+++.|..... ....+.-+++...|..++++|++++-.||++|..|.+|||+|+ .+.||...
T Consensus 753 g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~k 832 (928)
T PRK08074 753 GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVR 832 (928)
T ss_pred CCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEec
Confidence 6799999999999999999976422 1222222444456889999999998899999999999999997 48899888
Q ss_pred CCC------------------------------CHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 335 IPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 335 ~p~------------------------------s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
+|. .+..+.|-+||.-|....--++++++..
T Consensus 833 LPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 833 LPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 774 1233488999999988655456665544
No 135
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.5e-14 Score=154.43 Aligned_cols=283 Identities=18% Similarity=0.152 Sum_probs=176.5
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH--
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~-- 100 (507)
+.++.++.+|.. +++.|.-.--.+..| -++.|.||-|||+++.+|+.. .+..+-||++..-|+..-.+.+..
T Consensus 74 vREa~~R~lG~r-~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 74 VREASKRVLGMR-HFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred HHHHHHHHhCCC-cchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 345566677765 456666554444444 489999999999999999875 466799999999999866655444
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh---hhccCCccEEEEeccccccc---
Q 010563 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISS--- 172 (507)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~---~~~~~~l~~iViDEaH~i~~--- 172 (507)
+|+.+..+.......++...+ ..+|+|+|+--+.-......+.. ..-...+.+.||||+|.++=
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY--------~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEA 222 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNY--------ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEA 222 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhc--------CCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccC
Confidence 799999998887777766554 37899999987765444444422 11235588999999998841
Q ss_pred --------cCCCCHHHHHHHHHHHHhCC---------------CC-----------------------------------
Q 010563 173 --------WGHDFRPSYRKLSSLRNYLP---------------DV----------------------------------- 194 (507)
Q Consensus 173 --------~g~~fr~~~~~l~~l~~~~~---------------~~----------------------------------- 194 (507)
....-...|.....+...+. ..
T Consensus 223 rTPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~ 302 (939)
T PRK12902 223 RTPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFN 302 (939)
T ss_pred CCcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHH
Confidence 11111122222221111110 01
Q ss_pred -------------------------------------------------------------------------CEEEEee
Q 010563 195 -------------------------------------------------------------------------PILALTA 201 (507)
Q Consensus 195 -------------------------------------------------------------------------~~i~lSA 201 (507)
.+.+||+
T Consensus 303 AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTG 382 (939)
T PRK12902 303 ALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTG 382 (939)
T ss_pred HHHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCC
Confidence 2445555
Q ss_pred cCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEe--ecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHH
Q 010563 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAY 277 (507)
Q Consensus 202 T~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~--~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~ 277 (507)
|+.... ..+.+..++ .++..+.++|.+...... -.....++..+.+-+.. ..+.|+||-+.|.+..+.++..
T Consensus 383 Ta~te~-~Ef~~iY~l---~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~ 458 (939)
T PRK12902 383 TAKTEE-VEFEKTYKL---EVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSAL 458 (939)
T ss_pred CCHHHH-HHHHHHhCC---cEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHH
Confidence 554322 223333322 344455555555432211 11224555555544432 3567999999999999999999
Q ss_pred HHhCCCceeEecCCCCHHHHH-HHHHHHhcCC-ceEEEEeCcccccccCC
Q 010563 278 LSAGGISCAAYHAGLNDKARS-SVLDDWISSR-KQVVVATVAFGMGIDRK 325 (507)
Q Consensus 278 L~~~g~~~~~~h~~l~~~~R~-~~~~~f~~g~-~~VLVaT~a~~~GiD~p 325 (507)
|.+.|++...+++.-...+++ ++..+ .|+ -.|.|||+++|+|-|+.
T Consensus 459 L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 459 LQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HHHcCCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 999999998899863222222 22222 343 45999999999998864
No 136
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=1.1e-15 Score=150.21 Aligned_cols=320 Identities=17% Similarity=0.205 Sum_probs=199.2
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH------hcCCCeEEEecC
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA------LAKPGIVLVVSP 86 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~------l~~~~~~lvi~P 86 (507)
..+.|...+-+....+.|++.-... ....+.+-++.+.+++-+++++.||+|||. |+|- +...+.+..--|
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LP-vw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~~~v~CTQp 99 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELP-VWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHLTGVACTQP 99 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCc-hHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhccceeecCc
Confidence 3667777888888888888853332 345556667777788889999999999995 3332 123355666668
Q ss_pred hHHHHHHHHHHHHH-c----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhh-HHHHHhhhccCCcc
Q 010563 87 LIALMENQVIGLKE-K----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLN 160 (507)
Q Consensus 87 ~~~L~~q~~~~l~~-~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~-~~~l~~~~~~~~l~ 160 (507)
.+.-+.+.+.+... . |-.+.+. . .+++. ..+..-+ ..+|.+. +.........+..+
T Consensus 100 rrvaamsva~RVadEMDv~lG~EVGys-------I---rfEdC--~~~~T~L------ky~tDgmLlrEams~p~l~~y~ 161 (699)
T KOG0925|consen 100 RRVAAMSVAQRVADEMDVTLGEEVGYS-------I---RFEDC--TSPNTLL------KYCTDGMLLREAMSDPLLGRYG 161 (699)
T ss_pred hHHHHHHHHHHHHHHhccccchhcccc-------c---ccccc--CChhHHH------HHhcchHHHHHHhhCccccccc
Confidence 88777766665544 1 1111100 0 00000 0011112 2234332 22334445567789
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEE-ee
Q 010563 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-YK 239 (507)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~-~~ 239 (507)
+||+||||.-+--. .-.+.-|..+....|+.++|.+|||+....... +. -..|.+-..+...-.++|.-. .+
T Consensus 162 viiLDeahERtlAT---DiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~---yf-~n~Pll~vpg~~PvEi~Yt~e~er 234 (699)
T KOG0925|consen 162 VIILDEAHERTLAT---DILMGLLKEVVRNRPDLKLVVMSATLDAEKFQR---YF-GNAPLLAVPGTHPVEIFYTPEPER 234 (699)
T ss_pred EEEechhhhhhHHH---HHHHHHHHHHHhhCCCceEEEeecccchHHHHH---Hh-CCCCeeecCCCCceEEEecCCCCh
Confidence 99999999743200 011234556666678999999999987664432 22 233433333322222333222 22
Q ss_pred cchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC---------CCceeEecCCCCHHHHHHHHHHHh---cC
Q 010563 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------GISCAAYHAGLNDKARSSVLDDWI---SS 307 (507)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~---~g 307 (507)
+..+..+..+.++......+-++||....++.+..++.+... .++|..+| +++...+.+--. +|
T Consensus 235 DylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~ 310 (699)
T KOG0925|consen 235 DYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNG 310 (699)
T ss_pred hHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCC
Confidence 334455556666666666778999999999998888888743 24577777 333333333222 12
Q ss_pred --CceEEEEeCcccccccCCCccEEEEeCC------------------CCCHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 308 --RKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 308 --~~~VLVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
..+|+|+|+.++..+-++.|.+||.-++ |-|..+-.||.|||||.- +|.|+-+|+.+
T Consensus 311 ~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~-pGkcfrLYte~ 387 (699)
T KOG0925|consen 311 AYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR-PGKCFRLYTEE 387 (699)
T ss_pred CccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC-CCceEEeecHH
Confidence 3579999999999999999999996653 448888999999999975 99999999854
No 137
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=2.5e-17 Score=162.11 Aligned_cols=297 Identities=17% Similarity=0.170 Sum_probs=195.7
Q ss_pred CCCcHHHHHHHHHHHcC---CCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcC-Cc---eEEec
Q 010563 37 AQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG-IA---GEFLS 109 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g---~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~g-i~---~~~~~ 109 (507)
..+||+|+..+..+..+ +..+++.|+|+|||++-.-++..-...+||++..-.-++||..+++.+. +. ...+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 46899999999999843 5789999999999998776666667889999999888899999888742 21 12222
Q ss_pred CCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhH----HHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 010563 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~----~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (507)
+... ........+++.|.-+++..+.. ..+........++++++||+|.+...- ||.....+.
T Consensus 381 sd~K-----------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M--FRRVlsiv~ 447 (776)
T KOG1123|consen 381 SDAK-----------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM--FRRVLSIVQ 447 (776)
T ss_pred cccc-----------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH--HHHHHHHHH
Confidence 1110 00112366899999988754422 233445556669999999999987632 554333322
Q ss_pred HHHHhCCCCCEEEEeecCChhhHHHHHHHhCC-CCCeEEecc----------------------------------CCCC
Q 010563 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCL-QNPLVLKSS----------------------------------FNRP 230 (507)
Q Consensus 186 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~-~~~~~~~~~----------------------------------~~~~ 230 (507)
.. -.++||||+-.+..+ +..|++ ..|..+... ..+.
T Consensus 448 ---aH----cKLGLTATLvREDdK--I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 448 ---AH----CKLGLTATLVREDDK--ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred ---HH----hhccceeEEeecccc--ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 21 258999998655322 111111 122221110 0111
Q ss_pred ceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHh-cCCc
Q 010563 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI-SSRK 309 (507)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~-~g~~ 309 (507)
-+.|...+.. -...+.|.++-.. .+.++|||..+.-...+.|-.|.+ -+++|..++.+|.++++.|+ +..+
T Consensus 519 ~lLyvMNP~K--FraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~v 590 (776)
T KOG1123|consen 519 MLLYVMNPNK--FRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKV 590 (776)
T ss_pred heeeecCcch--hHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCcc
Confidence 1122221111 1223334444333 567899999888777777777644 57889999999999999999 5678
Q ss_pred eEEEEeCcccccccCCCccEEEEeCCC-CCHHHHHHHhcccCCCCC---CceEEEEec
Q 010563 310 QVVVATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQL---PSKSLLYYG 363 (507)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p-~s~~~y~Q~~GRagR~g~---~~~~i~~~~ 363 (507)
.-++-+.+....||+|...++|+.+.- .|-.+=.||.||.-|+.+ .+.-..||+
T Consensus 591 NTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYS 648 (776)
T KOG1123|consen 591 NTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYS 648 (776)
T ss_pred ceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeee
Confidence 889999999999999999999977653 478888999999988653 333444443
No 138
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.68 E-value=2.3e-14 Score=153.68 Aligned_cols=290 Identities=15% Similarity=0.044 Sum_probs=191.6
Q ss_pred EEcCCCchHHHHHHHHH---hcCCCeEEEecChHHHHHHHHHHHHH-cC-CceEEecCCCCHHHHHHHHHHhhcCCCccc
Q 010563 58 CLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KG-IAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (507)
Q Consensus 58 v~apTG~GKTl~~~lp~---l~~~~~~lvi~P~~~L~~q~~~~l~~-~g-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (507)
..+.+|+|||.+|+-.+ +..++.+||++|.++|..|..++|++ || ..+..+++..+..++...|..+..|. .+
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~--~~ 242 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ--AR 242 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--Cc
Confidence 33446999999997544 56788999999999999999999997 66 78999999999999999999988885 78
Q ss_pred EEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC-CCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHH
Q 010563 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (507)
Q Consensus 133 il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g-~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i 211 (507)
|+++|---+..| ..++++|||||-|.-+--. ...+..-+.+..++....+.++|+-|||++-+.....
T Consensus 243 IViGtRSAvFaP-----------~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 243 VVVGTRSAVFAP-----------VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred EEEEcceeEEec-----------cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 999988777665 3458999999999764321 1133444778888988889999999999998776533
Q ss_pred HHHhCCCCCeEE---eccCCCCceEEEEEee------------cchhhHHHHHHHHHHhcCCccEEEEeccch-------
Q 010563 212 MESLCLQNPLVL---KSSFNRPNLFYEVRYK------------DLLDDAYADLCSVLKANGDTCAIVYCLERT------- 269 (507)
Q Consensus 212 ~~~l~~~~~~~~---~~~~~~~ni~~~v~~~------------~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~------- 269 (507)
.. +.-..... ......|.+...-... ......++.+.+.++. + ++|||.|.+-
T Consensus 312 ~~--g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~--g-qvll~lnRrGyap~l~C 386 (665)
T PRK14873 312 ES--GWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEH--G-PVLVQVPRRGYVPSLAC 386 (665)
T ss_pred hc--CcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhc--C-cEEEEecCCCCCCeeEh
Confidence 21 11100000 0011123332221100 0112334444444443 3 7888877661
Q ss_pred ----------------------------------------------------hHHHHHHHHHhC--CCceeEecCCCCHH
Q 010563 270 ----------------------------------------------------TCDELSAYLSAG--GISCAAYHAGLNDK 295 (507)
Q Consensus 270 ----------------------------------------------------~~~~l~~~L~~~--g~~~~~~h~~l~~~ 295 (507)
-++++++.|.+. +.++....
T Consensus 387 ~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d------ 460 (665)
T PRK14873 387 ARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG------ 460 (665)
T ss_pred hhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC------
Confidence 225555555543 33343332
Q ss_pred HHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCC------------CHHHHHHHhcccCCCCCCceEEEEec
Q 010563 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSLLYYG 363 (507)
Q Consensus 296 ~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~------------s~~~y~Q~~GRagR~g~~~~~i~~~~ 363 (507)
+..+++.|. ++.+|||+|..+..=+. +++..|+..|... ...-+.|-.||+||.+.+|..++.++
T Consensus 461 -~d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~ 537 (665)
T PRK14873 461 -GDQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAE 537 (665)
T ss_pred -hHHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 234778886 58999999983322222 4678887766432 35566899999999999999998875
Q ss_pred cchHHHHHHHHH
Q 010563 364 MDDRRRMEFILS 375 (507)
Q Consensus 364 ~~d~~~~~~~~~ 375 (507)
++. ..++.+.+
T Consensus 538 p~~-~~~~~l~~ 548 (665)
T PRK14873 538 SSL-PTVQALIR 548 (665)
T ss_pred CCC-HHHHHHHh
Confidence 554 34444433
No 139
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.67 E-value=3.7e-14 Score=150.19 Aligned_cols=168 Identities=14% Similarity=0.040 Sum_probs=110.9
Q ss_pred CEEEEeecCChhh------HHHHHHHhCCCCCe-EEeccCC----CCc--eEEEEEe------ecc---h----------
Q 010563 195 PILALTATAAPKV------QKDVMESLCLQNPL-VLKSSFN----RPN--LFYEVRY------KDL---L---------- 242 (507)
Q Consensus 195 ~~i~lSAT~~~~~------~~~i~~~l~~~~~~-~~~~~~~----~~n--i~~~v~~------~~~---~---------- 242 (507)
++|+.|||+.-.- ...+.+.+|+.... ...++|+ +.. +.|.-.. .+. .
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 5899999998643 67888999986442 2345666 444 3332211 111 0
Q ss_pred ---hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhc----CCceEEEEe
Q 010563 243 ---DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVAT 315 (507)
Q Consensus 243 ---~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~----g~~~VLVaT 315 (507)
+...+.+..++... ++.++|.+.|....+.+++.|...---...+.|..+ .|..++++|++ |...||++|
T Consensus 453 ~~~~~~~~~~~~~~~~~-~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 453 TWLENVSLSTAAILRKA-QGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred hHHHHHHHHHHHHHHHc-CCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 11334455555544 457999999999999999999764222345566443 35667888886 478999999
Q ss_pred CcccccccC--------C--CccEEEEeCCCC-------------------------CHHHHHHHhcccCCCCCC--ceE
Q 010563 316 VAFGMGIDR--------K--DVRLVCHFNIPK-------------------------SMEAFYQESGRAGRDQLP--SKS 358 (507)
Q Consensus 316 ~a~~~GiD~--------p--~v~~VI~~~~p~-------------------------s~~~y~Q~~GRagR~g~~--~~~ 358 (507)
..|..|||+ | .++.||...+|. ..-.+.|-+||.-|.... --.
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~ 609 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR 609 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE
Confidence 999999999 2 388899888873 123457888888887664 334
Q ss_pred EEEeccc
Q 010563 359 LLYYGMD 365 (507)
Q Consensus 359 i~~~~~~ 365 (507)
++++++.
T Consensus 610 i~ilD~R 616 (636)
T TIGR03117 610 IHMLDGR 616 (636)
T ss_pred EEEEeCC
Confidence 4444443
No 140
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.64 E-value=4.9e-15 Score=136.54 Aligned_cols=167 Identities=31% Similarity=0.397 Sum_probs=114.7
Q ss_pred cCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEecChHHHHHHHHHHHHHcC-----
Q 010563 34 FGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKEKG----- 102 (507)
Q Consensus 34 fg~~~~r~~Q~~~i~~i~~g-~d~lv~apTG~GKTl~~~lp~l~---~--~~~~lvi~P~~~L~~q~~~~l~~~g----- 102 (507)
+++..++++|.+++..+..+ +.+++.+|||+|||.++..+++. . ...++|++|+.+++.|+...+...+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 57788999999999999998 99999999999999988777654 2 3679999999999999999998865
Q ss_pred CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHH
Q 010563 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (507)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~ 182 (507)
.....+....... .......+ ...++++|++.+....... ......++++|+||+|.+..+. +...+.
T Consensus 84 ~~~~~~~~~~~~~----~~~~~~~~--~~~v~~~t~~~l~~~~~~~----~~~~~~~~~iIiDE~h~~~~~~--~~~~~~ 151 (201)
T smart00487 84 KVVGLYGGDSKRE----QLRKLESG--KTDILVTTPGRLLDLLEND----LLELSNVDLVILDEAHRLLDGG--FGDQLE 151 (201)
T ss_pred EEEEEeCCcchHH----HHHHHhcC--CCCEEEeChHHHHHHHHcC----CcCHhHCCEEEEECHHHHhcCC--cHHHHH
Confidence 2233333322221 22223322 2478888877543321110 1233458899999999998642 444333
Q ss_pred HHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHh
Q 010563 183 KLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (507)
Q Consensus 183 ~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l 215 (507)
. +.... ++.+++++|||+++..........
T Consensus 152 ~---~~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 152 K---LLKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred H---HHHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 3 33333 578899999999977666544444
No 141
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.63 E-value=1.3e-14 Score=143.05 Aligned_cols=338 Identities=16% Similarity=0.146 Sum_probs=204.6
Q ss_pred CCcccccccccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHH--hcCCC
Q 010563 3 KSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPA--LAKPG 79 (507)
Q Consensus 3 ~~~~p~~~~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~-~g~d~lv~apTG~GKTl~~~lp~--l~~~~ 79 (507)
.+|.|..-.... .+.+-.-.+++...+-.. -++.+-|+|.+.+...+ +|..+++.-..|-|||+-++..+ .....
T Consensus 165 ld~lp~~~l~~a-~~~~ea~~~~l~ev~d~k-Lvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw 242 (689)
T KOG1000|consen 165 LDPLPQNILGLA-NFKPEAAPSDLNEVMDPK-LVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW 242 (689)
T ss_pred eccccccceehh-ccCCccCHHHHhhccCHH-HHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC
Confidence 345554443333 223333334444443332 24568899999876655 67788999999999997655433 24577
Q ss_pred eEEEecChHHHHHHHHHHHHHcCCceE--EecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccC
Q 010563 80 IVLVVSPLIALMENQVIGLKEKGIAGE--FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (507)
Q Consensus 80 ~~lvi~P~~~L~~q~~~~l~~~gi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~ 157 (507)
..|||||. +|-..|.++|..+--... .+...... .+..-.....+.+++.|+ +..+......+
T Consensus 243 plliVcPA-svrftWa~al~r~lps~~pi~vv~~~~D--------~~~~~~t~~~v~ivSye~------ls~l~~~l~~~ 307 (689)
T KOG1000|consen 243 PLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDKSSD--------PLPDVCTSNTVAIVSYEQ------LSLLHDILKKE 307 (689)
T ss_pred cEEEEecH-HHhHHHHHHHHHhcccccceEEEecccC--------CccccccCCeEEEEEHHH------HHHHHHHHhcc
Confidence 89999998 555789999988521111 11100000 000000112344444443 44455555556
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEE-------------
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL------------- 223 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~------------- 223 (507)
.++++|+||.|.+..-.. .+......... -..+|+||+|+.-.--.++...+..-++..+
T Consensus 308 ~~~vvI~DEsH~Lk~skt------kr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~ 381 (689)
T KOG1000|consen 308 KYRVVIFDESHMLKDSKT------KRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDG 381 (689)
T ss_pred cceEEEEechhhhhccch------hhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCc
Confidence 689999999999865221 11222211111 3458999999752211111111100000000
Q ss_pred ---------e----------------------------ccCCCCceEEEEEeecc------------------h------
Q 010563 224 ---------K----------------------------SSFNRPNLFYEVRYKDL------------------L------ 242 (507)
Q Consensus 224 ---------~----------------------------~~~~~~ni~~~v~~~~~------------------~------ 242 (507)
. .+..|..+.|....... .
T Consensus 382 k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~ 461 (689)
T KOG1000|consen 382 KQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHES 461 (689)
T ss_pred cccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHH
Confidence 0 00011111111110000 0
Q ss_pred ---------hhHHHHHHHHHHh------cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcC
Q 010563 243 ---------DDAYADLCSVLKA------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (507)
Q Consensus 243 ---------~~~~~~l~~~l~~------~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g 307 (507)
..+...+.+++-. .++.+.+|||......+.+...+.++++....+.|..++.+|....+.|+.+
T Consensus 462 l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~s 541 (689)
T KOG1000|consen 462 LLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTS 541 (689)
T ss_pred HHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccc
Confidence 0111222333322 3567899999999999999999999999999999999999999999999954
Q ss_pred -CceE-EEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEec
Q 010563 308 -RKQV-VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (507)
Q Consensus 308 -~~~V-LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~ 363 (507)
++.| +++-.|.|+|+++...+.||...+++++.-.+|.--|+.|-|+.+...++|-
T Consensus 542 eev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 542 EEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred cceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEE
Confidence 5555 5566789999999999999999999999999999999999999887666653
No 142
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.63 E-value=4.3e-13 Score=146.28 Aligned_cols=165 Identities=18% Similarity=0.150 Sum_probs=105.5
Q ss_pred CEEEEeecCCh-hhHHHHHHHhCCCC---Ce--EEeccCCCCceEEEEEee----c-chh----hHHHHHHHHHHhcCCc
Q 010563 195 PILALTATAAP-KVQKDVMESLCLQN---PL--VLKSSFNRPNLFYEVRYK----D-LLD----DAYADLCSVLKANGDT 259 (507)
Q Consensus 195 ~~i~lSAT~~~-~~~~~i~~~l~~~~---~~--~~~~~~~~~ni~~~v~~~----~-~~~----~~~~~l~~~l~~~~~~ 259 (507)
.+|++|||+++ .....+.+.+|+.. .. .+.++|+..+-...+.+. . ..+ ...+.+.+++. .+ +
T Consensus 458 ~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~~-g 535 (697)
T PRK11747 458 GAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-KH-K 535 (697)
T ss_pred EEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-cC-C
Confidence 36899999886 34456677888863 22 233444432221111111 1 112 22333444545 33 3
Q ss_pred cEEEEeccchhHHHHHHHHHhC-CCceeEecCCCCHHHHHHHHHHHh----cCCceEEEEeCcccccccCCC--ccEEEE
Q 010563 260 CAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAFGMGIDRKD--VRLVCH 332 (507)
Q Consensus 260 ~~IVf~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~----~g~~~VLVaT~a~~~GiD~p~--v~~VI~ 332 (507)
.++|+++|.+..+.++..|... +.. ...++. ..|..+++.|+ .|+..||++|..|..|||+|+ .+.||.
T Consensus 536 g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII 611 (697)
T PRK11747 536 GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVII 611 (697)
T ss_pred CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEE
Confidence 4899999999999999999753 333 344553 24677887776 467789999999999999987 789998
Q ss_pred eCCCCC------------------------------HHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 333 FNIPKS------------------------------MEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 333 ~~~p~s------------------------------~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
..+|.. +..+.|-+||.-|....--.+++.++.
T Consensus 612 ~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 612 TKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 887741 123478889999977544455555543
No 143
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.62 E-value=2.1e-15 Score=118.51 Aligned_cols=81 Identities=35% Similarity=0.534 Sum_probs=77.8
Q ss_pred HHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCC
Q 010563 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (507)
Q Consensus 273 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (507)
.+++.|+..++.+..+||++++++|..+++.|.++...|||+|+++++|+|+|+++.||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 010563 353 Q 353 (507)
Q Consensus 353 g 353 (507)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 144
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.61 E-value=1.5e-13 Score=150.47 Aligned_cols=166 Identities=21% Similarity=0.211 Sum_probs=107.2
Q ss_pred CEEEEeecCChh-hHHHHHHHhCCCCCe--E-EeccCCCCceEEEEEeec--------chhhHHHHHHHHHHhcCCccEE
Q 010563 195 PILALTATAAPK-VQKDVMESLCLQNPL--V-LKSSFNRPNLFYEVRYKD--------LLDDAYADLCSVLKANGDTCAI 262 (507)
Q Consensus 195 ~~i~lSAT~~~~-~~~~i~~~l~~~~~~--~-~~~~~~~~ni~~~v~~~~--------~~~~~~~~l~~~l~~~~~~~~I 262 (507)
.+|++|||+.+. ....+...+++.... . +.++++............ ...+....+..++...++ .++
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l 483 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPG-GVL 483 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCC-CEE
Confidence 489999998874 344456666555443 1 112223322212111111 112233444455555544 799
Q ss_pred EEeccchhHHHHHHHHHhCCCc-eeEecCCCCHHHHHHHHHHHhcCCc-eEEEEeCcccccccCCC--ccEEEEeCCCC-
Q 010563 263 VYCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKD--VRLVCHFNIPK- 337 (507)
Q Consensus 263 Vf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~~~R~~~~~~f~~g~~-~VLVaT~a~~~GiD~p~--v~~VI~~~~p~- 337 (507)
||++|.+..+.+++.+...... ....++..+ +...+++|..+.- -++|+|..|++|||+|+ .+.||..++|.
T Consensus 484 vlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 484 VLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred EEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCC
Confidence 9999999999999999876542 344555444 4478888886554 89999999999999997 47889888874
Q ss_pred -----------------------------CHHHHHHHhcccCCCCCCceEEEEecc
Q 010563 338 -----------------------------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (507)
Q Consensus 338 -----------------------------s~~~y~Q~~GRagR~g~~~~~i~~~~~ 364 (507)
.+....|.+||+-|.-..--.+++++.
T Consensus 561 ~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 561 NPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 345669999999996654444444443
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.58 E-value=1.7e-15 Score=138.54 Aligned_cols=156 Identities=26% Similarity=0.252 Sum_probs=93.8
Q ss_pred CCcHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecC
Q 010563 38 QFRDKQLDAIQAVLS-------GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~-------g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (507)
+||++|.+++..+.. .+.+++.+|||+|||.++...+.....++++++|+.+|++|+.+.+..++........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 489999999999884 5789999999999998887544433339999999999999999999765433222211
Q ss_pred CCC-----------HHHHHHHHHHhhcCCCcccEEEECcccccChhhHHH-------HHhhhccCCccEEEEeccccccc
Q 010563 111 TQT-----------MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-------LKKIHSRGLLNLVAIDEAHCISS 172 (507)
Q Consensus 111 ~~~-----------~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~-------l~~~~~~~~l~~iViDEaH~i~~ 172 (507)
... ......... .......++++.+...+........ ..........++||+||||....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKS--ESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHH--HHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred ccccccccccccccccccccccc--ccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 000 000000001 1122346677666665543221110 00111233478999999999754
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 010563 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (507)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (507)
-. .|..+ .. +++..+++||||+.
T Consensus 161 ~~-----~~~~i---~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 161 DS-----SYREI---IE-FKAAFILGLTATPF 183 (184)
T ss_dssp HH-----HHHHH---HH-SSCCEEEEEESS-S
T ss_pred HH-----HHHHH---Hc-CCCCeEEEEEeCcc
Confidence 11 13333 23 67888999999985
No 146
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=6e-14 Score=151.28 Aligned_cols=309 Identities=18% Similarity=0.257 Sum_probs=207.0
Q ss_pred CCcHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHhcC--CCeEEEecChHHHHHHHHHHHHH-----cCCceEEec
Q 010563 38 QFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLS 109 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~-d~lv~apTG~GKTl~~~lp~l~~--~~~~lvi~P~~~L~~q~~~~l~~-----~gi~~~~~~ 109 (507)
.+.|+|.++++.+.+.+ ++++.+|+|+|||.|..++.+.. .+++++|.|.-+.+..+...+.+ .|.....+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 45899999999988764 68999999999999999888864 56899999999988776666554 355566665
Q ss_pred CCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHH---HHH
Q 010563 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK---LSS 186 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~---l~~ 186 (507)
+..+...+.. . .-++++.|||... .+. ....+++.|+||.|.+..- +-+.|.. ...
T Consensus 1223 ge~s~~lkl~-----~----~~~vii~tpe~~d------~lq---~iQ~v~l~i~d~lh~igg~---~g~v~evi~S~r~ 1281 (1674)
T KOG0951|consen 1223 GETSLDLKLL-----Q----KGQVIISTPEQWD------LLQ---SIQQVDLFIVDELHLIGGV---YGAVYEVICSMRY 1281 (1674)
T ss_pred CccccchHHh-----h----hcceEEechhHHH------HHh---hhhhcceEeeehhhhhccc---CCceEEEEeeHHH
Confidence 5554433211 1 2467777777543 222 3345899999999998742 2222222 122
Q ss_pred HHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCce--EEEEEeecc--hh--------hHHHHHHHHH
Q 010563 187 LRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL--FYEVRYKDL--LD--------DAYADLCSVL 253 (507)
Q Consensus 187 l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni--~~~v~~~~~--~~--------~~~~~l~~~l 253 (507)
+..++ .+++++++|...+.. +++ ++.....++..+.++... ...+...+. .+ -.+..+....
T Consensus 1282 ia~q~~k~ir~v~ls~~lana--~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a 1356 (1674)
T KOG0951|consen 1282 IASQLEKKIRVVALSSSLANA--RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA 1356 (1674)
T ss_pred HHHHHHhheeEEEeehhhccc--hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh
Confidence 22222 368899999887655 333 777777777665543322 222222111 01 1222222221
Q ss_pred HhcCCccEEEEeccchhHHHHHHHHHh----------------------CCCceeEecCCCCHHHHHHHHHHHhcCCceE
Q 010563 254 KANGDTCAIVYCLERTTCDELSAYLSA----------------------GGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (507)
Q Consensus 254 ~~~~~~~~IVf~~s~~~~~~l~~~L~~----------------------~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (507)
..+++++||+++++.|..++.-|-. ...+...=|-+++..+..-+..-|..|.++|
T Consensus 1357 --~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1357 --GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred --cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEE
Confidence 2456899999999999887765521 0112222288999999999999999999999
Q ss_pred EEEeCcccccccCCCccEEEEeC-----------CCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 010563 312 VVATVAFGMGIDRKDVRLVCHFN-----------IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (507)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~-----------~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~ 379 (507)
+|...- .+|+-.. ...||..+ .+.+..+..|+.|+|.| .|.|+++....+...++.++.+..+
T Consensus 1435 ~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred EEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCc
Confidence 999877 8887664 34444222 45679999999999988 5689999999999988888765443
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=99.57 E-value=6.6e-15 Score=153.34 Aligned_cols=310 Identities=19% Similarity=0.245 Sum_probs=176.4
Q ss_pred CCCCcHHHHHHHHHHHcC----CCEEEEcCCCchHHHHHHHHH-hcCCCeEEEecChHHHHHHHHHHHHH---cCCceEE
Q 010563 36 HAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQIPA-LAKPGIVLVVSPLIALMENQVIGLKE---KGIAGEF 107 (507)
Q Consensus 36 ~~~~r~~Q~~~i~~i~~g----~d~lv~apTG~GKTl~~~lp~-l~~~~~~lvi~P~~~L~~q~~~~l~~---~gi~~~~ 107 (507)
-.+|||+|+.||++..+| ...-+.|.+|+|||++.+-.+ -....++|+++|.++|..|..+.+.. +-+.+..
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~a 238 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASA 238 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEE
Confidence 457999999999999876 235578899999998876322 12348899999999999999988876 4455555
Q ss_pred ecCCCCHHH-----------------HHHHHHHhhc--CCCcccEEEECcccccChhhHHHHHhh--hccCCccEEEEec
Q 010563 108 LSSTQTMQV-----------------KTKIYEDLDS--GKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDE 166 (507)
Q Consensus 108 ~~~~~~~~~-----------------~~~~~~~~~~--~~~~~~il~~tpe~~~t~~~~~~l~~~--~~~~~l~~iViDE 166 (507)
+++...... ...+.+.... .....-+++.|...+- .+... .-...+++||.||
T Consensus 239 VcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~------~i~eAQe~G~~~fDliicDE 312 (1518)
T COG4889 239 VCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP------RIKEAQEAGLDEFDLIICDE 312 (1518)
T ss_pred EecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH------HHHHHHHcCCCCccEEEecc
Confidence 554432111 1111111111 1123445555555432 22222 2245589999999
Q ss_pred cccccc---cCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHH---HH----HHHhCCCCCeEEeccCCCCc-----
Q 010563 167 AHCISS---WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK---DV----MESLCLQNPLVLKSSFNRPN----- 231 (507)
Q Consensus 167 aH~i~~---~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~---~i----~~~l~~~~~~~~~~~~~~~n----- 231 (507)
||+-.. -|.+ ...+.++..- ........+.||||+.--... .. .....|.+...+...+.|-+
T Consensus 313 AHRTtGa~~a~dd-~saFt~vHs~-~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv 390 (1518)
T COG4889 313 AHRTTGATLAGDD-KSAFTRVHSD-QNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAV 390 (1518)
T ss_pred hhccccceecccC-cccceeecCc-chhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHH
Confidence 999643 1111 1111111000 000123467788986421100 00 00011111111111111111
Q ss_pred -----eEEEEEeecch-----------------hhHHHHHHH-------HHHhc--------------CCccEEEEeccc
Q 010563 232 -----LFYEVRYKDLL-----------------DDAYADLCS-------VLKAN--------------GDTCAIVYCLER 268 (507)
Q Consensus 232 -----i~~~v~~~~~~-----------------~~~~~~l~~-------~l~~~--------------~~~~~IVf~~s~ 268 (507)
..|.|...... .-.++.... +.+.. +.++.|-||.+.
T Consensus 391 ~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I 470 (1518)
T COG4889 391 ERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDI 470 (1518)
T ss_pred HhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhh
Confidence 01222211000 001111111 11111 123578999999
Q ss_pred hhHHHHHHHHHh-------------CC--CceeEecCCCCHHHHHHHHH---HHhcCCceEEEEeCcccccccCCCccEE
Q 010563 269 TTCDELSAYLSA-------------GG--ISCAAYHAGLNDKARSSVLD---DWISSRKQVVVATVAFGMGIDRKDVRLV 330 (507)
Q Consensus 269 ~~~~~l~~~L~~-------------~g--~~~~~~h~~l~~~~R~~~~~---~f~~g~~~VLVaT~a~~~GiD~p~v~~V 330 (507)
++...+++.+.. .+ +.+....|.|...+|...+. .|..++++||----.+++|||+|..+.|
T Consensus 471 ~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsV 550 (1518)
T COG4889 471 KTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSV 550 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceE
Confidence 988888776632 23 34556778899988854443 2345678898888889999999999999
Q ss_pred EEeCCCCCHHHHHHHhcccCCCC
Q 010563 331 CHFNIPKSMEAFYQESGRAGRDQ 353 (507)
Q Consensus 331 I~~~~p~s~~~y~Q~~GRagR~g 353 (507)
|.+++-.|+-+.+|.+||+.|-.
T Consensus 551 iFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 551 IFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred EEecCchhHHHHHHHHHHHHHhC
Confidence 99999999999999999999953
No 148
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.55 E-value=3.4e-13 Score=145.32 Aligned_cols=306 Identities=15% Similarity=0.127 Sum_probs=200.1
Q ss_pred CCcHHHHHHHHHHH--c--CCCEEEEcCCCchHHHHHHH-HHh---cC--------CCeEEEecChHHHHHHHHHHHHHc
Q 010563 38 QFRDKQLDAIQAVL--S--GRDCFCLMPTGGGKSMCYQI-PAL---AK--------PGIVLVVSPLIALMENQVIGLKEK 101 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~--~--g~d~lv~apTG~GKTl~~~l-p~l---~~--------~~~~lvi~P~~~L~~q~~~~l~~~ 101 (507)
.+|.+|++.+.++. + +-+.|++-..|-|||+--+- .+. .+ .-..|||||. .|.-.|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 57899999998864 2 34678999999999964321 111 11 2348999998 7888999999886
Q ss_pred CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHH
Q 010563 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (507)
Q Consensus 102 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~ 181 (507)
.-....+.-..+...+....... .+.+|++++++.+.+. +..+.+ ..+.++|+||-|-|.+- -
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~----~~~~iiVtSYDv~RnD-----~d~l~~-~~wNYcVLDEGHVikN~-------k 1116 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQY----KNANIIVTSYDVVRND-----VDYLIK-IDWNYCVLDEGHVIKNS-------K 1116 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhc----cccceEEeeHHHHHHH-----HHHHHh-cccceEEecCcceecch-------H
Confidence 33222222223334444333332 2357888888876542 222221 23899999999997552 2
Q ss_pred HHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec------cCCC--------------------------
Q 010563 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS------SFNR-------------------------- 229 (507)
Q Consensus 182 ~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~------~~~~-------------------------- 229 (507)
.++....+++..-..+.||+|+-.+...+++..+.+--|..+.. .|-+
T Consensus 1117 tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1117 TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 55555556666666899999998766555555433322211100 0000
Q ss_pred --------------------Cce--EEEEE--------------------------------------------------
Q 010563 230 --------------------PNL--FYEVR-------------------------------------------------- 237 (507)
Q Consensus 230 --------------------~ni--~~~v~-------------------------------------------------- 237 (507)
|.| .|.+.
T Consensus 1197 KqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1197 KQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence 000 00000
Q ss_pred -----eec-ch---------------------hhHHHHHHHHHHhc----------------CCccEEEEeccchhHHHH
Q 010563 238 -----YKD-LL---------------------DDAYADLCSVLKAN----------------GDTCAIVYCLERTTCDEL 274 (507)
Q Consensus 238 -----~~~-~~---------------------~~~~~~l~~~l~~~----------------~~~~~IVf~~s~~~~~~l 274 (507)
..+ .+ ..|+..|.++|... ...+++|||.-+...+-+
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 000 00 01233444444331 234799999999999999
Q ss_pred HHHHHhCCC-ce--eEecCCCCHHHHHHHHHHHhcC-CceEE-EEeCcccccccCCCccEEEEeCCCCCHHHHHHHhccc
Q 010563 275 SAYLSAGGI-SC--AAYHAGLNDKARSSVLDDWISS-RKQVV-VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349 (507)
Q Consensus 275 ~~~L~~~g~-~~--~~~h~~l~~~~R~~~~~~f~~g-~~~VL-VaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRa 349 (507)
..-|-+... ++ ..+.|..++.+|.++.++|.++ .++|| .+|-+.|.|+|+.+.+.||.+.-.+++..-+|.+-||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 888876533 23 3789999999999999999988 78875 6788999999999999999999999999999999999
Q ss_pred CCCCCCceEEEE
Q 010563 350 GRDQLPSKSLLY 361 (507)
Q Consensus 350 gR~g~~~~~i~~ 361 (507)
.|-|++-..=+|
T Consensus 1437 HRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1437 HRIGQKRVVNVY 1448 (1549)
T ss_pred HhhcCceeeeee
Confidence 999986554433
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=2.6e-12 Score=141.16 Aligned_cols=165 Identities=18% Similarity=0.152 Sum_probs=104.0
Q ss_pred CEEEEeecCChhhHHHHHHHhCCCCCeEEec--cCCCCceEEEEEee------------cc-hhhHHHHHHH----HHHh
Q 010563 195 PILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRYK------------DL-LDDAYADLCS----VLKA 255 (507)
Q Consensus 195 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~--~~~~~ni~~~v~~~------------~~-~~~~~~~l~~----~l~~ 255 (507)
.+|++|||+++. ..+...||+..+..... .+...|+...+... .. .+..+..+.+ +++.
T Consensus 443 svil~SgTL~p~--~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~ 520 (705)
T TIGR00604 443 SVILASGTLSPL--DAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKI 520 (705)
T ss_pred EEEEecccCCcH--HHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhc
Confidence 378899999875 34567788754433221 11223332222111 11 1223333333 3333
Q ss_pred cCCccEEEEeccchhHHHHHHHHHhCCC-------ceeEecCCCCHHHHHHHHHHHhc----CCceEEEEe--Ccccccc
Q 010563 256 NGDTCAIVYCLERTTCDELSAYLSAGGI-------SCAAYHAGLNDKARSSVLDDWIS----SRKQVVVAT--VAFGMGI 322 (507)
Q Consensus 256 ~~~~~~IVf~~s~~~~~~l~~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~f~~----g~~~VLVaT--~a~~~Gi 322 (507)
. ++.+|||++|....+.+++.+.+.|. .-.+.-+ -+..++..++++|+. |+-.||+|+ ..+++||
T Consensus 521 ~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGI 598 (705)
T TIGR00604 521 I-PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGI 598 (705)
T ss_pred C-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcc
Confidence 3 45699999999999999998876542 1122222 122578889999964 456799999 8899999
Q ss_pred cCCC--ccEEEEeCCCC-CH------------------------------HHHHHHhcccCCCCCCceEEEEec
Q 010563 323 DRKD--VRLVCHFNIPK-SM------------------------------EAFYQESGRAGRDQLPSKSLLYYG 363 (507)
Q Consensus 323 D~p~--v~~VI~~~~p~-s~------------------------------~~y~Q~~GRagR~g~~~~~i~~~~ 363 (507)
|+++ .+.||..++|. ++ ....|-+||+-|....--++++.+
T Consensus 599 Df~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD 672 (705)
T TIGR00604 599 DFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLD 672 (705)
T ss_pred ccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 9998 79999999986 11 123688999999876555666654
No 150
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.54 E-value=9.7e-14 Score=147.19 Aligned_cols=324 Identities=19% Similarity=0.195 Sum_probs=227.5
Q ss_pred CCCcHHHHHHHHHHHc---C-CCEEEEcCCCchHHH------HHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCceE
Q 010563 37 AQFRDKQLDAIQAVLS---G-RDCFCLMPTGGGKSM------CYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~---g-~d~lv~apTG~GKTl------~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~ 106 (507)
..++++|...++++.+ + -+.|+.-.+|-|||. +|++-.....|.-+||+|+-.|.+ |...+....-.+.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPSv~ 471 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPSVQ 471 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhcccccccee
Confidence 3799999999999863 3 367888899999994 333333456788999999988864 5666666555555
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH
Q 010563 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (507)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~ 186 (507)
.+....+...+......+..++ .+||.+|.|.+..+.- .|.+. .+.++||||.|+|..-- .+|..
T Consensus 472 ~i~YkGtp~~R~~l~~qir~gK--FnVLlTtyEyiikdk~--lLsKI----~W~yMIIDEGHRmKNa~-------~KLt~ 536 (1157)
T KOG0386|consen 472 KIQYKGTPQQRSGLTKQQRHGK--FNVLLTTYEYIIKDKA--LLSKI----SWKYMIIDEGHRMKNAI-------CKLTD 536 (1157)
T ss_pred eeeeeCCHHHHhhHHHHHhccc--ceeeeeeHHHhcCCHH--HHhcc----CCcceeecccccccchh-------hHHHH
Confidence 5666667778887887777765 8999999997766431 22222 27899999999987622 44444
Q ss_pred HHH-hCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc------CCCC-----------------------------
Q 010563 187 LRN-YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FNRP----------------------------- 230 (507)
Q Consensus 187 l~~-~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~------~~~~----------------------------- 230 (507)
... .+.....+++|+|+..+....++..|++.-|.++.+. |+.|
T Consensus 537 ~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPF 616 (1157)
T KOG0386|consen 537 TLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPF 616 (1157)
T ss_pred HhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHH
Confidence 443 4445567888999887777777776666555554211 0000
Q ss_pred ----------------------------------------------------------------------ceE----EEE
Q 010563 231 ----------------------------------------------------------------------NLF----YEV 236 (507)
Q Consensus 231 ----------------------------------------------------------------------ni~----~~v 236 (507)
.++ ..+
T Consensus 617 lLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~ 696 (1157)
T KOG0386|consen 617 LLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSY 696 (1157)
T ss_pred HHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccc
Confidence 000 000
Q ss_pred Eeec------chhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCC
Q 010563 237 RYKD------LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (507)
Q Consensus 237 ~~~~------~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (507)
.... ....+++.|..++.+ ..+.+++.||.-..-..-+..+|.-.++....+.|....++|-..++.|....
T Consensus 697 ~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 697 TLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred ccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 0000 000223333333322 23567888988888888888888888888999999999999999999999644
Q ss_pred ---ceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 309 ---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 309 ---~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
...|.+|-+.|.|+|+.-.+.||.||..+++....|+--||.|.|+...+-++....-...-+.|+..
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999998888777665444444444443
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=4.5e-12 Score=137.20 Aligned_cols=121 Identities=23% Similarity=0.219 Sum_probs=95.6
Q ss_pred HHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccc
Q 010563 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (507)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (507)
++..+.+-+.. ..+.|+||-+.|.+..+.|+..|...|++...+++.....+-+-+-+.=+. -.|-|||+++|+|-
T Consensus 613 K~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGT 690 (1112)
T PRK12901 613 KYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGT 690 (1112)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCc
Confidence 44444443332 356789999999999999999999999998888887655554444333333 35999999999999
Q ss_pred cCC--------CccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchH
Q 010563 323 DRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (507)
Q Consensus 323 D~p--------~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~ 367 (507)
|+. +==+||-...+.|..---|-.||+||.|.||.+..|++.+|-
T Consensus 691 DIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 691 DIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 986 224788889999999999999999999999999999987763
No 152
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.42 E-value=1.2e-12 Score=113.46 Aligned_cols=136 Identities=29% Similarity=0.315 Sum_probs=89.4
Q ss_pred CCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEecChHHHHHHHHHHHHHcC---CceEEecCCCCHHHHHHHHHHhh
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLD 125 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~-----~~~~~lvi~P~~~L~~q~~~~l~~~g---i~~~~~~~~~~~~~~~~~~~~~~ 125 (507)
+.+++.+|||+|||..+...+.. ..++++|++|+..++.++.+.+.... +............... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHh
Confidence 46899999999999887766543 35799999999999999998888754 6666666554433322 111
Q ss_pred cCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 010563 126 SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (507)
Q Consensus 126 ~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (507)
.....++++|++.+..... ........++++||||+|.+..-. +.... ........+..+++++|||+
T Consensus 77 --~~~~~i~i~t~~~~~~~~~----~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 --SGKTDIVVGTPGRLLDELE----RLKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred --cCCCCEEEECcHHHHHHHH----cCCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccceEEEEeccC
Confidence 1247788888875532111 111123458899999999987632 22111 12233345678899999996
No 153
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.37 E-value=3.2e-11 Score=123.76 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=93.3
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCce-EEEEeCcccccccCCCccEEEEeCC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ-VVVATVAFGMGIDRKDVRLVCHFNI 335 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~-VLVaT~a~~~GiD~p~v~~VI~~~~ 335 (507)
.+.++|+|+.-.+...-+.++|..+|+....+.|.....+|..+...|+..++- .|++|-|.|.|||+...+.||.|+.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 345788888888888889999999999999999999999999999999986654 5889999999999999999999999
Q ss_pred CCCHHHHHHHhcccCCCCCCceEEEE
Q 010563 336 PKSMEAFYQESGRAGRDQLPSKSLLY 361 (507)
Q Consensus 336 p~s~~~y~Q~~GRagR~g~~~~~i~~ 361 (507)
.+++..-.|...||.|-|+.-.+.+|
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceeee
Confidence 99999999999999999986554444
No 154
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.32 E-value=1.6e-10 Score=114.45 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=86.9
Q ss_pred cEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcC-CceE-EEEeCcccccccCCCccEEEEeCCCC
Q 010563 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQV-VVATVAFGMGIDRKDVRLVCHFNIPK 337 (507)
Q Consensus 260 ~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~V-LVaT~a~~~GiD~p~v~~VI~~~~p~ 337 (507)
+.|||.......+-+.-.|.+.|+.++.+.|+|++..|...++.|++. +++| ||+-.|.|..+|+-....|+.+|+=+
T Consensus 640 KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWW 719 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWW 719 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccc
Confidence 456666666666666667777899999999999999999999999975 4554 67789999999999999999999999
Q ss_pred CHHHHHHHhcccCCCCC--CceEEEEecc
Q 010563 338 SMEAFYQESGRAGRDQL--PSKSLLYYGM 364 (507)
Q Consensus 338 s~~~y~Q~~GRagR~g~--~~~~i~~~~~ 364 (507)
++.--.|...|..|-|+ |-..+.|.-.
T Consensus 720 NpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 720 NPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred cHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 99999999999999987 4455555543
No 155
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.30 E-value=2.3e-10 Score=117.75 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=77.3
Q ss_pred HHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHh--cCCceE-EEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcc
Q 010563 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI--SSRKQV-VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGR 348 (507)
Q Consensus 272 ~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~--~g~~~V-LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GR 348 (507)
.-+..+|++.|.....+||....++|..+++.|. +|..+| |++-.+.|.|+|+-...++|..|+-+++.-=.|..-|
T Consensus 760 niv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDR 839 (901)
T KOG4439|consen 760 NIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDR 839 (901)
T ss_pred HHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHH
Confidence 4445666777888899999999999999999998 344555 5667888999999999999999999999999999999
Q ss_pred cCCCCCCceEEEE
Q 010563 349 AGRDQLPSKSLLY 361 (507)
Q Consensus 349 agR~g~~~~~i~~ 361 (507)
.-|.|+....+++
T Consensus 840 IYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 840 IYRMGQKKDVFIH 852 (901)
T ss_pred HHHhcccCceEEE
Confidence 9999998877665
No 156
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.30 E-value=1.6e-10 Score=124.08 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=101.6
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCC--ceEEEEeCcccccccCCCccEEEEeC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFN 334 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~--~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (507)
.+.++|||+.-.+..+-|..+|+-+|+-...+.|..+-++|+...++|.... ...|++|-..|.|||+-..+.||+||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 3567999999999999999999999999999999999999999999999664 34688899999999999999999999
Q ss_pred CCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 010563 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~ 377 (507)
-.+++.--.|.--|+.|-|+--...+|---++...-+.|+++.
T Consensus 1355 sDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1355 SDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred CCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 9999998889888999988877666665444444434444443
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.27 E-value=3e-10 Score=123.81 Aligned_cols=91 Identities=25% Similarity=0.247 Sum_probs=70.6
Q ss_pred EEEEeccchhHHHHHHHHHhC----C--CceeEecCCCCHHHHHHHHHHH----------------------hc----CC
Q 010563 261 AIVYCLERTTCDELSAYLSAG----G--ISCAAYHAGLNDKARSSVLDDW----------------------IS----SR 308 (507)
Q Consensus 261 ~IVf~~s~~~~~~l~~~L~~~----g--~~~~~~h~~l~~~~R~~~~~~f----------------------~~----g~ 308 (507)
++|-.++++.+-.++..|-.. + +.+..||+......|..+.++. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 578888888888888888654 3 3467899999887777665543 12 46
Q ss_pred ceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCC
Q 010563 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (507)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~ 354 (507)
..|+|+|++.+.|+|+ |.+++| .-|.++.+.+|+.||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 7899999999999997 455554 346789999999999999886
No 158
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.20 E-value=2.2e-09 Score=115.07 Aligned_cols=322 Identities=20% Similarity=0.185 Sum_probs=195.5
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHH---HHHHH-HH
Q 010563 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN---QVIGL-KE 100 (507)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q---~~~~l-~~ 100 (507)
.+-++++|. +|+=.+.+..+.....-++.|.||=|||++..+|+.. .+..+.||+..--||.- |+..+ .-
T Consensus 71 Ea~~Rvlg~---~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~ 147 (822)
T COG0653 71 EASKRVLGM---RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEF 147 (822)
T ss_pred HHHHHhcCC---ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHH
Confidence 445555664 4555666777766666789999999999999999864 35667788877777764 33333 33
Q ss_pred cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH---HhhhccCCccEEEEecccccc------
Q 010563 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS------ 171 (507)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~------ 171 (507)
+|+.+....++.+..++...+. .+|.|+|.--+.-......+ ..-.-...+.+.||||++-++
T Consensus 148 LGlsvG~~~~~m~~~ek~~aY~--------~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARt 219 (822)
T COG0653 148 LGLSVGVILAGMSPEEKRAAYA--------CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEART 219 (822)
T ss_pred cCCceeeccCCCChHHHHHHHh--------cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccc
Confidence 7999999999998888877765 67888887655543322222 111112357888899988773
Q ss_pred ----ccCCCCH-HHHHHHHHHHHhCC---------CCCEEEEeec-----------------------------------
Q 010563 172 ----SWGHDFR-PSYRKLSSLRNYLP---------DVPILALTAT----------------------------------- 202 (507)
Q Consensus 172 ----~~g~~fr-~~~~~l~~l~~~~~---------~~~~i~lSAT----------------------------------- 202 (507)
.|....+ ..|..+..+...+. ..+.+.+|-.
T Consensus 220 PLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l 299 (822)
T COG0653 220 PLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHIL 299 (822)
T ss_pred ceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHH
Confidence 2422221 33555555443221 1112222221
Q ss_pred --------------------------------------------------------------------------CChhhH
Q 010563 203 --------------------------------------------------------------------------AAPKVQ 208 (507)
Q Consensus 203 --------------------------------------------------------------------------~~~~~~ 208 (507)
+..+..
T Consensus 300 ~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~ 379 (822)
T COG0653 300 FFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEE 379 (822)
T ss_pred hhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhh
Confidence 111100
Q ss_pred HHHHHHhCCCCCeEEeccCCCCceEEEE---EeecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCC
Q 010563 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (507)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~ni~~~v---~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~ 283 (507)
+ ...+-+-.++..+.++|.+.... .+. ....++..+...+.. ..+.|+||-+.+.+..+.+...|.+.|+
T Consensus 380 E----F~~iY~l~vv~iPTnrp~~R~D~~D~vy~-t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i 454 (822)
T COG0653 380 E----FDVIYGLDVVVIPTNRPIIRLDEPDLVYK-TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGI 454 (822)
T ss_pred h----hhhccCCceeeccCCCcccCCCCcccccc-chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCC
Confidence 0 00001111222233344332111 111 123455555544432 3567999999999999999999999999
Q ss_pred ceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCcc-----------EEEEeCCCCCHHHHHHHhcccCCC
Q 010563 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR-----------LVCHFNIPKSMEAFYQESGRAGRD 352 (507)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~-----------~VI~~~~p~s~~~y~Q~~GRagR~ 352 (507)
+-..+.+.-...+-+.+.+.-+. --|-|||+++|+|-|+.--. +||-..--.|-.---|-.||+||.
T Consensus 455 ~h~VLNAk~h~~EA~Iia~AG~~--gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQ 532 (822)
T COG0653 455 PHNVLNAKNHAREAEIIAQAGQP--GAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQ 532 (822)
T ss_pred CceeeccccHHHHHHHHhhcCCC--CccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccC
Confidence 87777776654443333332222 34889999999999975221 345444445555556999999999
Q ss_pred CCCceEEEEeccchH
Q 010563 353 QLPSKSLLYYGMDDR 367 (507)
Q Consensus 353 g~~~~~i~~~~~~d~ 367 (507)
|.||.+..|++-+|.
T Consensus 533 GDpG~S~F~lSleD~ 547 (822)
T COG0653 533 GDPGSSRFYLSLEDD 547 (822)
T ss_pred CCcchhhhhhhhHHH
Confidence 999999988887663
No 159
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.15 E-value=3.5e-09 Score=120.32 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=94.4
Q ss_pred cEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcC--CceEEEEeCcccccccCCCccEEEEeCCCC
Q 010563 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (507)
Q Consensus 260 ~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~ 337 (507)
+++||........-+...|...++....++|+++.+.|...+++|.++ ..-++++|.+.|.|+|+-....||++|+.+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 799999999999999999999998899999999999999999999986 455677888999999999999999999999
Q ss_pred CHHHHHHHhcccCCCCCCceEEEEe
Q 010563 338 SMEAFYQESGRAGRDQLPSKSLLYY 362 (507)
Q Consensus 338 s~~~y~Q~~GRagR~g~~~~~i~~~ 362 (507)
++....|...|+.|.|+...+.++-
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEE
Confidence 9999999999999999877766653
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.10 E-value=1e-08 Score=109.40 Aligned_cols=282 Identities=16% Similarity=0.179 Sum_probs=166.5
Q ss_pred CEEEEcCCCchHHHHHHHHHh----cCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCc
Q 010563 55 DCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~l----~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (507)
-.++.+|.|+|||....-+.- .....+++|+-.++|+.+...+++..|+............. + .+ ..
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~-------i-~~-~~ 121 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI-------I-DG-RP 121 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc-------c-cc-cc
Confidence 357899999999976544332 24679999999999999999999987764322221111000 0 00 01
Q ss_pred ccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHH-------HHHHHHHHHhCCCCCEEEEeecC
Q 010563 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS-------YRKLSSLRNYLPDVPILALTATA 203 (507)
Q Consensus 131 ~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~-------~~~l~~l~~~~~~~~~i~lSAT~ 203 (507)
++-+.+..+.+. ++.. ...++.++|||||+-.+.. |-|.+. +..+..+... ...+|++-||+
T Consensus 122 ~~rLivqIdSL~------R~~~-~~l~~yDvVIIDEv~svL~--qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~l 190 (824)
T PF02399_consen 122 YDRLIVQIDSLH------RLDG-SLLDRYDVVIIDEVMSVLN--QLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADL 190 (824)
T ss_pred cCeEEEEehhhh------hccc-ccccccCEEEEehHHHHHH--HHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCC
Confidence 334444443321 1111 1123479999999976643 223333 3333333332 44589999999
Q ss_pred ChhhHHHHHHHhCCCCCeEEeccCCCCc-----eEEEEE-----------e-----------------------ecchhh
Q 010563 204 APKVQKDVMESLCLQNPLVLKSSFNRPN-----LFYEVR-----------Y-----------------------KDLLDD 244 (507)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~n-----i~~~v~-----------~-----------------------~~~~~~ 244 (507)
.....+.+...-+-.+..++...+..++ ....-. . ......
T Consensus 191 n~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 270 (824)
T PF02399_consen 191 NDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETT 270 (824)
T ss_pred CHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhh
Confidence 9988775554332222223322211111 000000 0 000012
Q ss_pred HHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccC
Q 010563 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324 (507)
Q Consensus 245 ~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~ 324 (507)
.+..|..-|.. +.++-||+.|...++.+++..+..+.++..+++.-+..+ + +.| ++++|++=|++...|+++
T Consensus 271 F~~~L~~~L~~--gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 271 FFSELLARLNA--GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSF 342 (824)
T ss_pred HHHHHHHHHhC--CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEecc
Confidence 33334443333 446779999999999999999988888998988766553 2 334 568999999999999998
Q ss_pred CCccE--EEEe--CCC--CCHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 325 KDVRL--VCHF--NIP--KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 325 p~v~~--VI~~--~~p--~s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
....+ |.-| ... .++.+.+|.+||+-.-. ....+++++..
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 65533 3323 222 35667899999995544 45666777654
No 161
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.09 E-value=5.3e-10 Score=110.46 Aligned_cols=161 Identities=19% Similarity=0.120 Sum_probs=98.1
Q ss_pred HHHHHHHHHHc-------------CCCEEEEcCCCchHHHHHHHHHh---cC--C---CeEEEecChHHHHHHHHHHHHH
Q 010563 42 KQLDAIQAVLS-------------GRDCFCLMPTGGGKSMCYQIPAL---AK--P---GIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 42 ~Q~~~i~~i~~-------------g~d~lv~apTG~GKTl~~~lp~l---~~--~---~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
+|.+++..++. .+.+++.-.+|.|||+..+..+. .. . ..+|||+|. ++..+|..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 58888887742 24577888999999977655443 11 1 259999999 888999999998
Q ss_pred cC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECccccc---ChhhHHHHHhhhccCCccEEEEecccccccc
Q 010563 101 KG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (507)
Q Consensus 101 ~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~---t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (507)
+. .+.....+.. ..............++++|.+.+. .+.....+.. ..+++|||||+|.+.+.
T Consensus 80 ~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS------ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HSGT-TS-EEEESSSC------HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTT
T ss_pred cccccccccccccccc------ccccccccccccceeeecccccccccccccccccccc----ccceeEEEecccccccc
Confidence 64 3444444333 111122333445789999988776 2223333333 23899999999999654
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCC
Q 010563 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP 220 (507)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~ 220 (507)
+ .........+.....+++|||+..+...++...+.+-.+
T Consensus 150 ~-------s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~ 189 (299)
T PF00176_consen 150 D-------SKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNP 189 (299)
T ss_dssp T-------SHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCT
T ss_pred c-------ccccccccccccceEEeeccccccccccccccchheeec
Confidence 4 233333333556678999999998877777766654333
No 162
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.01 E-value=9.3e-09 Score=108.97 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=89.9
Q ss_pred CccEEEEeccchhHHHHHHHHHh----------------------CCCceeEecCCCCHHHHHHHHHHHhcCC---c-eE
Q 010563 258 DTCAIVYCLERTTCDELSAYLSA----------------------GGISCAAYHAGLNDKARSSVLDDWISSR---K-QV 311 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~----------------------~g~~~~~~h~~l~~~~R~~~~~~f~~g~---~-~V 311 (507)
+.+.|||-.|.....-+..+|.- .|.....+.|..+...|+...++|.+-. . -.
T Consensus 1142 GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~ 1221 (1567)
T KOG1015|consen 1142 GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLF 1221 (1567)
T ss_pred cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEE
Confidence 56799999999999888888853 1334577899999999999999998542 2 36
Q ss_pred EEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEE
Q 010563 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (507)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~ 361 (507)
||+|-|.+.|||+=....||.||..+++.--.|-+=|+.|.|+..-+++|
T Consensus 1222 LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1222 LISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999999999999999999999999999999999999999998777776
No 163
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.98 E-value=2.6e-07 Score=104.06 Aligned_cols=282 Identities=19% Similarity=0.181 Sum_probs=154.9
Q ss_pred CCEEEEcCCCchHHHHHHHHH-----hcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCC
Q 010563 54 RDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~-----l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (507)
+..+++=-||||||++....+ +...+.++||+-.+.|-.|..+.+.+++..........+..... ..+..+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk---~~l~~~- 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELK---ELLEDG- 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHH---HHHhcC-
Confidence 458999999999998765443 23567899999999999999999999765443322223333332 333333
Q ss_pred CcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhH
Q 010563 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (507)
Q Consensus 129 ~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 208 (507)
.-.|+++|-..+.....-. ......++=-+||+||||+ ++.| ..-..+...+++...++||+||...--
T Consensus 350 -~~~ii~TTIQKf~~~~~~~--~~~~~~~~~ivvI~DEaHR-SQ~G-------~~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 350 -KGKIIVTTIQKFNKAVKED--ELELLKRKNVVVIIDEAHR-SQYG-------ELAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred -CCcEEEEEecccchhhhcc--cccccCCCcEEEEEechhh-cccc-------HHHHHHHHHhccceEEEeeCCcccccc
Confidence 3568888777664422111 0000112234689999998 6666 233445777888999999999865432
Q ss_pred HHH-HHHhCCC-CCeEEeccCCCC---ceEEEEE-eecchh---------------------------------------
Q 010563 209 KDV-MESLCLQ-NPLVLKSSFNRP---NLFYEVR-YKDLLD--------------------------------------- 243 (507)
Q Consensus 209 ~~i-~~~l~~~-~~~~~~~~~~~~---ni~~~v~-~~~~~~--------------------------------------- 243 (507)
..- ....|-. ....+..+.... .+.|... ..+...
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 220 0111100 000010011100 2222222 000000
Q ss_pred ----hHHHHHHHHH-H-hcCCccEEEEeccchhHHHHHHHHHhCCC---------c-e-------------eEecCCCCH
Q 010563 244 ----DAYADLCSVL-K-ANGDTCAIVYCLERTTCDELSAYLSAGGI---------S-C-------------AAYHAGLND 294 (507)
Q Consensus 244 ----~~~~~l~~~l-~-~~~~~~~IVf~~s~~~~~~l~~~L~~~g~---------~-~-------------~~~h~~l~~ 294 (507)
.....+.+.. + ...+.++.+.+.+++.+..+++....... . + ...|....
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~- 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLK- 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHH-
Confidence 0000111111 1 12344677777777755555544322100 0 0 00122222
Q ss_pred HHHHHHHHHH--hcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCC
Q 010563 295 KARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (507)
Q Consensus 295 ~~R~~~~~~f--~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (507)
..+.....+| .....++||.++++-.|.|-|....+ -+|-|----..+|.+-|+.|.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccC
Confidence 2223334443 35678999999999999999966554 467777778889999999994
No 164
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.94 E-value=6.1e-07 Score=91.26 Aligned_cols=219 Identities=15% Similarity=0.200 Sum_probs=146.5
Q ss_pred cCCccEEEEeccccccc--cCCCCHHHH------------HHHHHHHHhCC------CCCEEEEeecCChhhHHHHHHHh
Q 010563 156 RGLLNLVAIDEAHCISS--WGHDFRPSY------------RKLSSLRNYLP------DVPILALTATAAPKVQKDVMESL 215 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~--~g~~fr~~~------------~~l~~l~~~~~------~~~~i~lSAT~~~~~~~~i~~~l 215 (507)
+..+.++|||.||.+.- |.| ....+ ..+.+++..+- -+|.|++|+..+++....+....
T Consensus 159 LSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~ 237 (442)
T PF06862_consen 159 LSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHC 237 (442)
T ss_pred hheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhC
Confidence 34488999999998863 442 11000 11122222111 25799999999998776554422
Q ss_pred -CCCCCeEEecc-----------CCCCceEEEEEeec---chhhHHHH----HHHHHH-hcCCccEEEEeccchhHHHHH
Q 010563 216 -CLQNPLVLKSS-----------FNRPNLFYEVRYKD---LLDDAYAD----LCSVLK-ANGDTCAIVYCLERTTCDELS 275 (507)
Q Consensus 216 -~~~~~~~~~~~-----------~~~~ni~~~v~~~~---~~~~~~~~----l~~~l~-~~~~~~~IVf~~s~~~~~~l~ 275 (507)
+......+... ..-+.++..+.... ..+..++. +.-.+. ....+.+|||++|--+--.+.
T Consensus 238 ~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlR 317 (442)
T PF06862_consen 238 QNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLR 317 (442)
T ss_pred cCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHH
Confidence 22111122111 11222333332211 11223322 222233 445567999999999999999
Q ss_pred HHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc--cccccCCCccEEEEeCCCCCHHHHHHHhcccCCCC
Q 010563 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF--GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (507)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~--~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g 353 (507)
++|++.++..+.+|--.+..+-...-..|..|+.+||+-|.=+ =+=..+.+|+.||.|++|..+.-|-..++-.+...
T Consensus 318 N~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 318 NYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESS 397 (442)
T ss_pred HHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999653 44566788999999999999988877665554443
Q ss_pred C------CceEEEEeccchHHHHHHHHH
Q 010563 354 L------PSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 354 ~------~~~~i~~~~~~d~~~~~~~~~ 375 (507)
. ...|.++|+.-|.-.++.|+-
T Consensus 398 ~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 398 GGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred cccccccCceEEEEecHhHHHHHHHHhC
Confidence 2 578999999999988888764
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.85 E-value=5.7e-10 Score=94.89 Aligned_cols=132 Identities=17% Similarity=0.094 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCchHHHHHHH----HHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCC
Q 010563 53 GRDCFCLMPTGGGKSMCYQI----PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l----p~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (507)
|+-.++-+.+|+|||.-.+. -++.+..++||+.|||.++....+.|+...+.. -....... ..+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~--~t~~~~~~---------~~g~ 72 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRF--HTNARMRT---------HFGS 72 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEE--ESTTSS-------------SS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCccc--Cceeeecc---------ccCC
Confidence 44457888999999964332 245689999999999999999999997654322 22221110 0111
Q ss_pred CcccEEEECcccccChhh-HHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 129 PSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 129 ~~~~il~~tpe~~~t~~~-~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
++..+.+.+. ...+..-....++++||+||||..-.+...+|..+. .+ .......+|++|||++-..
T Consensus 73 --------~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~---~~-~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 73 --------SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLR---EL-AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --------SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHH---HH-HHTTS-EEEEEESS-TT--
T ss_pred --------CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHH---Hh-hhccCeeEEEEeCCCCCCC
Confidence 1113334332 333444444567999999999986554332332222 12 2223567999999998653
No 166
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.73 E-value=1.2e-07 Score=90.55 Aligned_cols=135 Identities=21% Similarity=0.226 Sum_probs=94.9
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH--
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~-- 100 (507)
+.++.++.+|+. |++.|.-++-.+..|+ ++.+.||-|||++..+|+.. .+..|-||+...-|+..-.+.+..
T Consensus 66 ~rea~~r~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 66 VREAARRTLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp HHHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHH
Confidence 334556677766 7888888887777776 99999999999998888763 567788899999999876666544
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhh---ccCCccEEEEecccccc
Q 010563 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH---SRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~---~~~~l~~iViDEaH~i~ 171 (507)
+|+.+.......+...+...+. .+|+|+|..-+.-......+.... ....+.++||||+|.+.
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~--------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYA--------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHh--------CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7999999999888777666554 579999987665443333332111 13568999999999875
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.54 E-value=6.9e-07 Score=87.55 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=59.8
Q ss_pred cCCCCCcHHHHHHH----HHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCC-----eEEEecChHHHHHHHHHHHHH
Q 010563 34 FGHAQFRDKQLDAI----QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 34 fg~~~~r~~Q~~~i----~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~-----~~lvi~P~~~L~~q~~~~l~~ 100 (507)
|.|. +||.|.+.+ ..+.+|+.+++.||||+|||++|++|++. ... ++++.++|.++.++....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 6777 599999954 44557889999999999999999999873 233 799999999999888888887
Q ss_pred cCCceEEecC
Q 010563 101 KGIAGEFLSS 110 (507)
Q Consensus 101 ~gi~~~~~~~ 110 (507)
......+..+
T Consensus 84 ~~~~~~~~~~ 93 (289)
T smart00488 84 LMQKVEYESD 93 (289)
T ss_pred cccccceecc
Confidence 6444434433
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.54 E-value=6.9e-07 Score=87.55 Aligned_cols=76 Identities=20% Similarity=0.214 Sum_probs=59.8
Q ss_pred cCCCCCcHHHHHHH----HHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCC-----eEEEecChHHHHHHHHHHHHH
Q 010563 34 FGHAQFRDKQLDAI----QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 34 fg~~~~r~~Q~~~i----~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~-----~~lvi~P~~~L~~q~~~~l~~ 100 (507)
|.|. +||.|.+.+ ..+.+|+.+++.||||+|||++|++|++. ... ++++.++|.++.++....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 6777 599999954 44557889999999999999999999873 233 799999999999888888887
Q ss_pred cCCceEEecC
Q 010563 101 KGIAGEFLSS 110 (507)
Q Consensus 101 ~gi~~~~~~~ 110 (507)
......+..+
T Consensus 84 ~~~~~~~~~~ 93 (289)
T smart00489 84 LMQKVEYESD 93 (289)
T ss_pred cccccceecc
Confidence 6444434433
No 169
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=8e-06 Score=82.51 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=92.7
Q ss_pred ccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc--ccccccCCCccEEEEeCCC
Q 010563 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDRKDVRLVCHFNIP 336 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a--~~~GiD~p~v~~VI~~~~p 336 (507)
..++||.++--.--++..++++.++....+|--.+...-.+.-+-|..|...||+-|.- +=+--++.+|+.||.|.+|
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP 632 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPP 632 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCC
Confidence 45799999999999999999999887666665555555556667789999999999975 4566889999999999999
Q ss_pred CCHHHH---HHHhcccCCCC----CCceEEEEeccchHHHHHHHHH
Q 010563 337 KSMEAF---YQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 337 ~s~~~y---~Q~~GRagR~g----~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
..+.-| +.+.+|+.-.| ....|.++|+.-|...++.++-
T Consensus 633 ~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 633 NNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred CCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 988655 66677765433 3456999999999888877654
No 170
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.31 E-value=4e-05 Score=84.50 Aligned_cols=80 Identities=15% Similarity=0.061 Sum_probs=53.5
Q ss_pred ccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHH-HHHhCCCCCEEEEeecCChh---
Q 010563 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPK--- 206 (507)
Q Consensus 131 ~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~-l~~~~~~~~~i~lSAT~~~~--- 206 (507)
-.++++||-++... .|....+...+..+||||||++..-. .|.-+.+ ++...+..-+.||||.+...
T Consensus 8 ggi~~~T~rIl~~D----lL~~ri~~~~itgiiv~~Ahr~~~~~-----~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g 78 (814)
T TIGR00596 8 GGIFSITSRILVVD----LLTGIIPPELITGILVLRADRIIESS-----QEAFILRLYRQKNKTGFIKAFSDNPEAFTMG 78 (814)
T ss_pred CCEEEEechhhHhH----HhcCCCCHHHccEEEEeecccccccc-----cHHHHHHHHHHhCCCcceEEecCCCcccccc
Confidence 45788888877553 34555566668999999999986521 1233333 44455555689999998863
Q ss_pred --hHHHHHHHhCCCC
Q 010563 207 --VQKDVMESLCLQN 219 (507)
Q Consensus 207 --~~~~i~~~l~~~~ 219 (507)
-...+++.|++.+
T Consensus 79 ~~~l~~vmk~L~i~~ 93 (814)
T TIGR00596 79 FSPLETKMRNLFLRH 93 (814)
T ss_pred hHHHHHHHHHhCcCe
Confidence 3667777777754
No 171
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.30 E-value=2.8e-06 Score=76.39 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=75.9
Q ss_pred HHHHhcCCccEEEEeccchhHHHHHHHHHhCCC--ceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC--cccccccCCC
Q 010563 251 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKD 326 (507)
Q Consensus 251 ~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~--~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~--a~~~GiD~p~ 326 (507)
++++..+ +.++||++|.+..+.+.+.++..+. ....+.- +..++..+++.|.+++-.||+++. .+..|||+|+
T Consensus 3 ~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 4444444 6799999999999999999987632 1122222 355788999999999999999999 9999999997
Q ss_pred --ccEEEEeCCCC----C--------------------------HHHHHHHhcccCCCCCCceEEEEecc
Q 010563 327 --VRLVCHFNIPK----S--------------------------MEAFYQESGRAGRDQLPSKSLLYYGM 364 (507)
Q Consensus 327 --v~~VI~~~~p~----s--------------------------~~~y~Q~~GRagR~g~~~~~i~~~~~ 364 (507)
++.||..++|. + +....|-+||+-|....--++++.+.
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 78999999884 1 12237889999998865555555553
No 172
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.30 E-value=4.3e-08 Score=105.63 Aligned_cols=219 Identities=18% Similarity=0.199 Sum_probs=120.4
Q ss_pred CCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEecChHHHHHHHHHHHHH----cCCceEE
Q 010563 38 QFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKE----KGIAGEF 107 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~-g~d~lv~apTG~GKTl~~~lp~l~-----~~~~~lvi~P~~~L~~q~~~~l~~----~gi~~~~ 107 (507)
.+.|.|...+..+.. ..++++.+|||+|||++|.+.... ...++++|.|..+|+..-++.+.. -|++..-
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 466777776655543 356889999999999999887653 257899999999999877766655 3566655
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc-CCCCHHHHHHHHH
Q 010563 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW-GHDFRPSYRKLSS 186 (507)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~-g~~fr~~~~~l~~ 186 (507)
+.+....... . ..+..++++|||....-.+ ......-...++++|+||.|++.+- |.- +. +..
T Consensus 1007 ~tgd~~pd~~-----~----v~~~~~~ittpek~dgi~R--sw~~r~~v~~v~~iv~de~hllg~~rgPV----le-~iv 1070 (1230)
T KOG0952|consen 1007 LTGDVTPDVK-----A----VREADIVITTPEKWDGISR--SWQTRKYVQSVSLIVLDEIHLLGEDRGPV----LE-VIV 1070 (1230)
T ss_pred ccCccCCChh-----h----eecCceEEcccccccCccc--cccchhhhccccceeecccccccCCCcce----EE-EEe
Confidence 5544333211 1 1236788999986543211 1111112234788999999998763 321 11 111
Q ss_pred HHHhC------CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCc-----------eEEEEEeecchhhHHHHH
Q 010563 187 LRNYL------PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN-----------LFYEVRYKDLLDDAYADL 249 (507)
Q Consensus 187 l~~~~------~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~n-----------i~~~v~~~~~~~~~~~~l 249 (507)
.+..+ +.++.+.+|--+.. ..++..+|+.++..-+..+ -+|+ ++|..+........+
T Consensus 1071 sr~n~~s~~t~~~vr~~glsta~~n--a~dla~wl~~~~~~nf~~s-vrpvp~~~~i~gfp~~~~cprm~smnkpa~--- 1144 (1230)
T KOG0952|consen 1071 SRMNYISSQTEEPVRYLGLSTALAN--ANDLADWLNIKDMYNFRPS-VRPVPLEVHIDGFPGQHYCPRMMSMNKPAF--- 1144 (1230)
T ss_pred eccccCccccCcchhhhhHhhhhhc--cHHHHHHhCCCCcCCCCcc-cccCCceEeecCCCchhcchhhhhcccHHH---
Confidence 11111 13344544332222 2577888887755212111 1221 122211111111122
Q ss_pred HHHHHhcCCccEEEEeccchhHHHHHHHH
Q 010563 250 CSVLKANGDTCAIVYCLERTTCDELSAYL 278 (507)
Q Consensus 250 ~~~l~~~~~~~~IVf~~s~~~~~~l~~~L 278 (507)
..+....+..++|||+.+++....-+.-|
T Consensus 1145 qaik~~sp~~p~lifv~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1145 QAIKTHSPIKPVLIFVSSRRQTRLTALDL 1173 (1230)
T ss_pred HHHhcCCCCCceEEEeecccccccchHhH
Confidence 22223355678999999887654444333
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.27 E-value=1.7e-05 Score=87.68 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=42.2
Q ss_pred CceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCC
Q 010563 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (507)
Q Consensus 308 ~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~ 352 (507)
..+.|++-+|+..|.|-|+|-.++-+.-..|...-.|.+||.-|-
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 678999999999999999999999999889999999999999983
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.20 E-value=1.1e-05 Score=85.99 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=85.9
Q ss_pred CccEEEEeccchhHHHHHHHHHhC-------CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEE
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~V 330 (507)
.+-++||.+-....-.|...|... .+.....|+-+...+..++.+....|..++|+.|.....-|-+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 456889998888888888777643 3467888999888888888888889999999999999999999898888
Q ss_pred EEeCCC------------------CCHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 331 CHFNIP------------------KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 331 I~~~~p------------------~s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
|..+.- .|.....|+.||+||.- +|.|..+.+..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR-~G~~f~lcs~a 774 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR-PGFCFHLCSRA 774 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec-ccccccccHHH
Confidence 855433 26677899999999964 78888876643
No 175
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.98 E-value=7.2e-05 Score=72.03 Aligned_cols=163 Identities=18% Similarity=0.130 Sum_probs=98.7
Q ss_pred CCcHHHHHHHHHHHc--------C-CC-EEEEcCCCchHHHHHHH---HHhcCC-CeEEEecChHHHHHHHHHHHHHcCC
Q 010563 38 QFRDKQLDAIQAVLS--------G-RD-CFCLMPTGGGKSMCYQI---PALAKP-GIVLVVSPLIALMENQVIGLKEKGI 103 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~--------g-~d-~lv~apTG~GKTl~~~l---p~l~~~-~~~lvi~P~~~L~~q~~~~l~~~gi 103 (507)
.+...|.+++-...+ | +- .++--.||.||--...- -...++ .+.|+|+..-.|..|-.+.|+..|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 378899998855431 1 33 44555999999843222 222344 4699999999999999999999876
Q ss_pred ceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccCh--------hhHHHHHhhhccCCccEEEEeccccccccCC
Q 010563 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP--------GFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (507)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~--------~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~ 175 (507)
....+......+.. .......-++++|.-.+... .++..+.+......=++||+||||.......
T Consensus 117 ~~i~v~~l~~~~~~-------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 117 DNIPVHPLNKFKYG-------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CcccceechhhccC-------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 54443322221110 00112345777777655433 1233333332222246899999999876421
Q ss_pred C---CHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 176 D---FRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 176 ~---fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
. -...=.....+...+|+.+++.+|||...+.
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep 224 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLPNARVVYASATGASEP 224 (303)
T ss_pred cCccccHHHHHHHHHHHhCCCCcEEEecccccCCC
Confidence 0 1112234556788899999999999987654
No 176
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.93 E-value=8.7e-05 Score=77.11 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=65.5
Q ss_pred hcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH--h--cCCCeEEEecChHHHHHHHHHHHHHcCCceEEe
Q 010563 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA--L--AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (507)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~--l--~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~ 108 (507)
.+|+.++...|..|+.+++...-.|+++|+|+|||.+-.-.+ + ...+.+||++|..--+.|.++.+.+.|+++.-+
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl 484 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRL 484 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeee
Confidence 378899999999999999999999999999999995432111 1 257899999999998899999999999888766
Q ss_pred cCC
Q 010563 109 SST 111 (507)
Q Consensus 109 ~~~ 111 (507)
.+.
T Consensus 485 ~ak 487 (935)
T KOG1802|consen 485 CAK 487 (935)
T ss_pred ehh
Confidence 543
No 177
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.90 E-value=0.0023 Score=67.84 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=89.3
Q ss_pred ccEEEEeccchhHHHHHHHHHhCCCc------------------eeEecCCCCHHHHHHHHHHHhcC---CceEEEEeCc
Q 010563 259 TCAIVYCLERTTCDELSAYLSAGGIS------------------CAAYHAGLNDKARSSVLDDWISS---RKQVVVATVA 317 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~g~~------------------~~~~h~~l~~~~R~~~~~~f~~g---~~~VLVaT~a 317 (507)
.++|||..+.-....+.+.|.+..++ ...+.|..+..+|++.+++|.+. ..-++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 35788888888888888888764332 23567778889999999999853 2357889999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHH
Q 010563 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (507)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~ 368 (507)
...|||+-....+|.++..+++.--.|.+-|.-|-|+...|++|--..|..
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~ 850 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNS 850 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhh
Confidence 999999887888888999999999999999999999999999986655543
No 178
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.84 E-value=0.00053 Score=73.59 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=55.3
Q ss_pred CCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCC--CCCce-----------EEEEeccchHHHHHHH
Q 010563 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD--QLPSK-----------SLLYYGMDDRRRMEFI 373 (507)
Q Consensus 307 g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~--g~~~~-----------~i~~~~~~d~~~~~~~ 373 (507)
...+.|++-.++-.|.|=|+|=.++-.....|..+=.|++||+-|- .+.|. -.++.+.++...++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999993 22222 2344556666666666
Q ss_pred HHhc
Q 010563 374 LSKN 377 (507)
Q Consensus 374 ~~~~ 377 (507)
.++.
T Consensus 562 qkEI 565 (985)
T COG3587 562 QKEI 565 (985)
T ss_pred HHHH
Confidence 5544
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.81 E-value=7.9e-05 Score=68.79 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHH--HHh-cCCCeEEEecChHHHHHH
Q 010563 38 QFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMEN 93 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~--d~lv~apTG~GKTl~~~l--p~l-~~~~~~lvi~P~~~L~~q 93 (507)
+|++.|.+++..++.+. -.++.+|.|+|||.+... .++ ..+..+++++||...+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~ 61 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKE 61 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHH
Confidence 47899999999998654 367789999999965322 122 346789999999877665
No 180
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.75 E-value=7.1e-05 Score=77.36 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=51.9
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHHH---HHhcCCCeEEEecChHHHHHHHHHHHH
Q 010563 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLK 99 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d-~lv~apTG~GKTl~~~l---p~l~~~~~~lvi~P~~~L~~q~~~~l~ 99 (507)
..+.+-|.+|+....+.++ .++.+|+|+|||.+... -++.++.++||..|+..-+...+++|.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 5688999999999998866 57899999999955432 345678899999999999998888755
No 181
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.67 E-value=0.0001 Score=69.64 Aligned_cols=63 Identities=33% Similarity=0.432 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEcCCCchHHH--HHHHHHh---------cCCCeEEEecChHHHHHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSM--CYQIPAL---------AKPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d-~lv~apTG~GKTl--~~~lp~l---------~~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
++.+.|.+|+..++.... .++.||+|+|||. +.++..+ .....+||++|+.+-+.+.++.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 9999999999993 3333333 3567899999999999999988877
No 182
>PF13245 AAA_19: Part of AAA domain
Probab=97.48 E-value=0.00031 Score=53.97 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=36.3
Q ss_pred HHHHHHcCCC-EEEEcCCCchHHHHHH-H-H-HhcC----CCeEEEecChHHHHHHHHHHH
Q 010563 46 AIQAVLSGRD-CFCLMPTGGGKSMCYQ-I-P-ALAK----PGIVLVVSPLIALMENQVIGL 98 (507)
Q Consensus 46 ~i~~i~~g~d-~lv~apTG~GKTl~~~-l-p-~l~~----~~~~lvi~P~~~L~~q~~~~l 98 (507)
++...+.+.. +++.+|+|+|||.... . . .+.. +..++|++|++..+.+..+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4553334445 4559999999994432 1 1 1222 678999999999998877777
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.47 E-value=0.00019 Score=66.05 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=36.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEecChHHH
Q 010563 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIAL 90 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~--~~~~lvi~P~~~L 90 (507)
...++.|..++++++..+-+++.+|.|+|||+..+..++. . ..+++++-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 4467899999999998788999999999999887766653 2 3478888888764
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.44 E-value=0.002 Score=61.19 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=41.6
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCC--CeEEEecChHHH
Q 010563 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKP--GIVLVVSPLIAL 90 (507)
Q Consensus 34 fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l---~~~--~~~lvi~P~~~L 90 (507)
+++...+..|...+.++.++.-+++.+|+|+|||+.....++ ..+ .++++.-|....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 355566789999999998888889999999999976654443 222 345666677654
No 185
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.42 E-value=0.0015 Score=56.66 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=54.3
Q ss_pred ecCCCCHHHHHHHHHHHhcCC-ceEEEEeCcccccccCCC--ccEEEEeCCCCC--------------------------
Q 010563 288 YHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD--VRLVCHFNIPKS-------------------------- 338 (507)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~-~~VLVaT~a~~~GiD~p~--v~~VI~~~~p~s-------------------------- 338 (507)
+.-+.+..+...+++.|++.. ..||++|..+.+|||+|+ .+.||..++|..
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 106 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFV 106 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHH
Confidence 344455556788999998654 379999988999999997 578998888741
Q ss_pred -----HHHHHHHhcccCCCCCCceEEEEec
Q 010563 339 -----MEAFYQESGRAGRDQLPSKSLLYYG 363 (507)
Q Consensus 339 -----~~~y~Q~~GRagR~g~~~~~i~~~~ 363 (507)
.....|-+||+-|....--++++++
T Consensus 107 ~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 107 SLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1233678888888765444454443
No 186
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.42 E-value=0.00095 Score=72.59 Aligned_cols=127 Identities=26% Similarity=0.232 Sum_probs=84.9
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEcCCCchHHHH--HHHHHh-cCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCC
Q 010563 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMC--YQIPAL-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d-~lv~apTG~GKTl~--~~lp~l-~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~ 113 (507)
.++.-|++|+..++..+| .++.+-+|+|||.+ .++-+| ..+.++|..+=|-+-+....-.|+.+++...-+.+...
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 478899999999988876 68889999999954 344444 45677888888888888888999999888665554433
Q ss_pred HHHHHH-----------HHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 010563 114 MQVKTK-----------IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (507)
Q Consensus 114 ~~~~~~-----------~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (507)
.....+ .+.++...-.+..|+.+|.--+..|-| ..+.+++.|||||-.++.
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf--------~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF--------VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh--------hccccCEEEEcccccccc
Confidence 222111 112222222335566666554444433 233489999999998875
No 187
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.31 E-value=0.0021 Score=70.99 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=45.9
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhcC-C--CeEEEecChHHHHH
Q 010563 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-P--GIVLVVSPLIALME 92 (507)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~--~lp~l~~-~--~~~lvi~P~~~L~~ 92 (507)
....+|+ .+++.|++|+..+..++-+++.+++|+|||.+. ++-++.. + ..++++.||-.-+.
T Consensus 316 ~~~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 316 VEKKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred HHHhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH
Confidence 3344565 489999999999998888999999999999643 2333333 3 46788899976654
No 188
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.28 E-value=0.002 Score=55.97 Aligned_cols=93 Identities=23% Similarity=0.335 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCC---ceeEecCCCCHHHHHHHHHHHhcCCc---eEEEEeCc--ccccccCCC--ccEEEEeCCCCC--
Q 010563 271 CDELSAYLSAGGI---SCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVA--FGMGIDRKD--VRLVCHFNIPKS-- 338 (507)
Q Consensus 271 ~~~l~~~L~~~g~---~~~~~h~~l~~~~R~~~~~~f~~g~~---~VLVaT~a--~~~GiD~p~--v~~VI~~~~p~s-- 338 (507)
.+.+++.+++.+. ....+.-+....+...++++|++..- .||+++.- +++|||+|+ .+.||..++|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3455566655432 11222222223345678888886543 69998887 999999998 688999888841
Q ss_pred -----------------------------HHHHHHHhcccCCCCCCceEEEEec
Q 010563 339 -----------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (507)
Q Consensus 339 -----------------------------~~~y~Q~~GRagR~g~~~~~i~~~~ 363 (507)
+....|-+||+-|....--++++.+
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1233788899999876544555554
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.27 E-value=0.0014 Score=66.48 Aligned_cols=45 Identities=20% Similarity=0.062 Sum_probs=33.7
Q ss_pred EEEEcCCCchHHHHHHHHH--h---cCCCeEEEecChHHHHHHHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQIPA--L---AKPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~--l---~~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
++|.+.+|||||+..+--+ + .....++++++..+|+......+..
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 6899999999997654222 2 3467899999999998766666655
No 190
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.17 E-value=0.0091 Score=55.64 Aligned_cols=123 Identities=24% Similarity=0.274 Sum_probs=73.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHc---CCCEEEEcCCCchHHHHHHHHHh----cCC-CeEEEecCh
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS---GRDCFCLMPTGGGKSMCYQIPAL----AKP-GIVLVVSPL 87 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~---g~d~lv~apTG~GKTl~~~lp~l----~~~-~~~lvi~P~ 87 (507)
.|.|..-++.+.--+.. ++ -+|+.|.++...+.+ |++.+.++-+|.|||.+ ++|++ ..+ ..+.+++|.
T Consensus 4 ~w~p~~~P~wLl~E~e~--~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVpk 79 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES--NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVPK 79 (229)
T ss_pred CCCchhChHHHHHHHHc--Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcCH
Confidence 46666555555544443 44 489999999999985 57899999999999976 34443 333 456667775
Q ss_pred HHHHHHHHHHHHHc-----CCceEEec--CC--CCHHHHHHHHHHhhcCCCcccEEEECcccccC
Q 010563 88 IALMENQVIGLKEK-----GIAGEFLS--ST--QTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143 (507)
Q Consensus 88 ~~L~~q~~~~l~~~-----gi~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t 143 (507)
+|..|..+.|++. +-++..+. .. .+......+...+......-.+++++||.+.+
T Consensus 80 -~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 80 -ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred -HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 7888888777762 22222222 11 12222222222222222234588999995543
No 191
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.16 E-value=0.0011 Score=56.51 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=12.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
++-+++.||+|+|||....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999996543
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.16 E-value=0.0053 Score=66.25 Aligned_cols=77 Identities=21% Similarity=0.113 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCCC-CcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhcC-----CCeEEEecChHHHHHHH
Q 010563 23 KEALVKLLRWHFGHAQ-FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-----PGIVLVVSPLIALMENQ 94 (507)
Q Consensus 23 ~~~l~~~l~~~fg~~~-~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~--~lp~l~~-----~~~~lvi~P~~~L~~q~ 94 (507)
...+...|.+.|+... ..++|+.|+...+.++-+++.+++|+|||.+. ++..+.. ...+++..||-.-+...
T Consensus 136 ~~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL 215 (615)
T PRK10875 136 EALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARL 215 (615)
T ss_pred hHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHH
Confidence 3567777888777652 35899999999999999999999999999653 3333321 23678889998766655
Q ss_pred HHHHH
Q 010563 95 VIGLK 99 (507)
Q Consensus 95 ~~~l~ 99 (507)
.+.+.
T Consensus 216 ~e~~~ 220 (615)
T PRK10875 216 TESLG 220 (615)
T ss_pred HHHHH
Confidence 54443
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.13 E-value=0.0048 Score=66.39 Aligned_cols=69 Identities=19% Similarity=0.079 Sum_probs=47.1
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHhcC------CCeEEEecChHHHHHHHHHHH
Q 010563 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK------PGIVLVVSPLIALMENQVIGL 98 (507)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~--~lp~l~~------~~~~lvi~P~~~L~~q~~~~l 98 (507)
+.+.|....-.++|+.|+..++.++-+++.+++|+|||.+. ++..+.. ...+++..||-.-+....+.+
T Consensus 137 l~~~~~~~~~~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~ 213 (586)
T TIGR01447 137 LENLFPLLNEQNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESL 213 (586)
T ss_pred HHHhhccccccHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHH
Confidence 33434332224799999999999999999999999999643 3333321 146889999976665544444
No 194
>PRK08181 transposase; Validated
Probab=97.08 E-value=0.0094 Score=57.64 Aligned_cols=55 Identities=27% Similarity=0.362 Sum_probs=34.0
Q ss_pred CcHHHHHHHH----HHHcCCCEEEEcCCCchHHHHHH-HH-HhcCCCeEEEecChHHHHHH
Q 010563 39 FRDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQ-IP-ALAKPGIVLVVSPLIALMEN 93 (507)
Q Consensus 39 ~r~~Q~~~i~----~i~~g~d~lv~apTG~GKTl~~~-lp-~l~~~~~~lvi~P~~~L~~q 93 (507)
+.+.|..++. .+-.++++++.||+|+|||.... +. .+...+..++..+...|+.+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 3456666653 34467899999999999994332 22 22334555555566666655
No 195
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.00 E-value=0.0051 Score=60.41 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=49.6
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHHHHhc------CCCeEEEecChHHHHH
Q 010563 30 LRWHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALME 92 (507)
Q Consensus 30 l~~~fg~~~~r~~Q~~~i~~i~~g~--d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~P~~~L~~ 92 (507)
-++.||+....-.|.-|++.++... =|.+.++-|+|||+.++.+.+. ...++||.=|+..+-+
T Consensus 220 ~~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 220 DQEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE 290 (436)
T ss_pred chhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc
Confidence 3478999988889999999988764 3677889999999887777664 3567888889887653
No 196
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.024 Score=57.75 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=70.3
Q ss_pred CCEEEEcCCCchHHHHHH-HHH-hc-----CCCeEEEec--ChHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ-IPA-LA-----KPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYED 123 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~-lp~-l~-----~~~~~lvi~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~ 123 (507)
+.+++++|||+|||.+.. +.+ +. .+..+.+++ +.+.-+.+|...+.. +|++...... .
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~---~--------- 242 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES---F--------- 242 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc---H---------
Confidence 457899999999997654 222 21 233454444 555656666655544 5555432211 0
Q ss_pred hhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-C-CCEEEEee
Q 010563 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-D-VPILALTA 201 (507)
Q Consensus 124 ~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~-~~~i~lSA 201 (507)
..+...+.. ....++|+||++.+... + ...+..+..+..... . -.++.++|
T Consensus 243 --------------------~~l~~~L~~---~~~~DlVLIDTaGr~~~---~-~~~l~el~~~l~~~~~~~e~~LVlsa 295 (388)
T PRK12723 243 --------------------KDLKEEITQ---SKDFDLVLVDTIGKSPK---D-FMKLAEMKELLNACGRDAEFHLAVSS 295 (388)
T ss_pred --------------------HHHHHHHHH---hCCCCEEEEcCCCCCcc---C-HHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 011111221 23478999999987532 1 112345555555332 3 35799999
Q ss_pred cCChhhHHHHHHHhC
Q 010563 202 TAAPKVQKDVMESLC 216 (507)
Q Consensus 202 T~~~~~~~~i~~~l~ 216 (507)
|.......++.....
T Consensus 296 t~~~~~~~~~~~~~~ 310 (388)
T PRK12723 296 TTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCHHHHHHHHHHhc
Confidence 999887777766653
No 197
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.93 E-value=0.0039 Score=67.88 Aligned_cols=74 Identities=22% Similarity=0.167 Sum_probs=58.1
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHH--H-HHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecC
Q 010563 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--I-PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g-~d~lv~apTG~GKTl~~~--l-p~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (507)
..+.+.|.+|+..++.. ..+++.+|+|+|||.+.. + -++..+.+++|++|+..-+.+..+.+...++++.-+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~ 233 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGH 233 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCC
Confidence 45789999999999877 567899999999995432 2 23345678999999999999999999887666555543
No 198
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.88 E-value=0.00039 Score=74.47 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=54.3
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhc---CCceEEEEeCccccc
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRKQVVVATVAFGMG 321 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~---g~~~VLVaT~a~~~G 321 (507)
.+.+++||..-.+..+-+..++...+ ....+.|..+..+|+....+|.. ...-.|.+|.+.|.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 45689999998888888899998888 77889999999999999999983 345678999998876
No 199
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.87 E-value=0.008 Score=61.33 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=46.5
Q ss_pred hcCCCCCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHh-------cCCCeEEEecChHHHHHHHHHHHHH
Q 010563 33 HFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL-------AKPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~i~----~g~d~lv~apTG~GKTl~~~lp~l-------~~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
.|.|+..+|.|.+-+-.+- .+..+++.||+|+|||.+.+-.++ ..+.+.|+.+-|..=++..+.+|+.
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 4888999999988665443 456799999999999965432222 2356778887776655555555443
No 200
>PRK06526 transposase; Provisional
Probab=96.85 E-value=0.004 Score=59.83 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=27.1
Q ss_pred HHHHcCCCEEEEcCCCchHHHHHHH--HHhcCCCeEEEecChHHHHHH
Q 010563 48 QAVLSGRDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (507)
Q Consensus 48 ~~i~~g~d~lv~apTG~GKTl~~~l--p~l~~~~~~lvi~P~~~L~~q 93 (507)
+.+-.++++++.||+|+|||..... -.+...+..+++.+...|+.+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 3344667999999999999954432 222333444444444445444
No 201
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.82 E-value=0.0032 Score=68.05 Aligned_cols=76 Identities=26% Similarity=0.274 Sum_probs=52.4
Q ss_pred cCCCCCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHhc-----------------C---------------
Q 010563 34 FGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA-----------------K--------------- 77 (507)
Q Consensus 34 fg~~~~r~~Q~~~i~~i~----~g~d~lv~apTG~GKTl~~~lp~l~-----------------~--------------- 77 (507)
|.|. +++.|..-+..++ ...++++..|||+|||++.+-..|. +
T Consensus 18 fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 4554 7999999877766 4578999999999999876544331 0
Q ss_pred -------------CCeEEEecChHHHHHHHHHHHHHcC--CceEEecC
Q 010563 78 -------------PGIVLVVSPLIALMENQVIGLKEKG--IAGEFLSS 110 (507)
Q Consensus 78 -------------~~~~lvi~P~~~L~~q~~~~l~~~g--i~~~~~~~ 110 (507)
.+++.+-+-|-+-+.|.++++++.+ .+..++.+
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLgS 144 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLGS 144 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEeec
Confidence 1245555667677788899998854 44444443
No 202
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.80 E-value=0.02 Score=52.72 Aligned_cols=127 Identities=20% Similarity=0.116 Sum_probs=67.3
Q ss_pred EEEEcCCCchHHHHHHH-HH--hcCCCeEEEec--ChHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHHhhcCCC
Q 010563 56 CFCLMPTGGGKSMCYQI-PA--LAKPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~l-p~--l~~~~~~lvi~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (507)
+++++|||+|||.+..- .+ ..++.++.+++ ..|.=+.+|.+.+.+ +|++............
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~------------- 70 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAE------------- 70 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHH-------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHH-------------
Confidence 57899999999966432 22 12344454444 344455566655544 5555443322211111
Q ss_pred cccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhH
Q 010563 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQ 208 (507)
Q Consensus 130 ~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~ 208 (507)
......+.....+.++|+||-+.+-.. -......+..+.... |.-..+.++||......
T Consensus 71 ----------------~~~~~l~~~~~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 71 ----------------IAREALEKFRKKGYDLVLIDTAGRSPR----DEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ----------------HHHHHHHHHHHTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ----------------HHHHHHHHHhhcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 011111111223478999999876321 233345666655554 45567899999988776
Q ss_pred HHHHHHh
Q 010563 209 KDVMESL 215 (507)
Q Consensus 209 ~~i~~~l 215 (507)
..+....
T Consensus 131 ~~~~~~~ 137 (196)
T PF00448_consen 131 EQALAFY 137 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6555543
No 203
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.79 E-value=0.013 Score=50.30 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
++.+++.+|+|+|||....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999996543
No 204
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0054 Score=61.08 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=26.0
Q ss_pred HHHHHc-C--CCEEEEcCCCchHHHHHHHHHhcCCCeEEEecCh
Q 010563 47 IQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (507)
Q Consensus 47 i~~i~~-g--~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~ 87 (507)
+..+++ | .++|+.+|+|+|||..+.+.+-..+....-++.+
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 444444 3 3799999999999987766554444444444443
No 205
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.75 E-value=0.0061 Score=58.62 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=50.6
Q ss_pred HHHHHHhcCCceEEEEeCcccccccCCC--------ccEEEEeCCCCCHHHHHHHhcccCCCCCCce
Q 010563 299 SVLDDWISSRKQVVVATVAFGMGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (507)
Q Consensus 299 ~~~~~f~~g~~~VLVaT~a~~~GiD~p~--------v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~ 357 (507)
...+.|++|+.+|+|-|.+.+.||.+.. -|+-|...+|+|....+|..||+.|.|+...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~ 118 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSA 118 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccC
Confidence 3457899999999999999999998763 3567788999999999999999999998443
No 206
>PRK08727 hypothetical protein; Validated
Probab=96.74 E-value=0.01 Score=56.37 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=13.0
Q ss_pred CEEEEcCCCchHHHH
Q 010563 55 DCFCLMPTGGGKSMC 69 (507)
Q Consensus 55 d~lv~apTG~GKTl~ 69 (507)
.+++.+|+|+|||..
T Consensus 43 ~l~l~G~~G~GKThL 57 (233)
T PRK08727 43 WLYLSGPAGTGKTHL 57 (233)
T ss_pred eEEEECCCCCCHHHH
Confidence 489999999999944
No 207
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.016 Score=60.09 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=15.8
Q ss_pred CEEEEcCCCchHHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~ 74 (507)
.+++.||.|+|||.++.+-+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999997665443
No 208
>PRK12377 putative replication protein; Provisional
Probab=96.64 E-value=0.013 Score=56.02 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=26.5
Q ss_pred CCEEEEcCCCchHHHHHH-H-HHhcCCCeEEEecChHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ-I-PALAKPGIVLVVSPLIALMENQ 94 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~-l-p~l~~~~~~lvi~P~~~L~~q~ 94 (507)
..+++.+|+|+|||.... + -.+...+..+++++..+|+.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 568999999999994332 2 2233455555666666776553
No 209
>PRK06893 DNA replication initiation factor; Validated
Probab=96.57 E-value=0.0092 Score=56.53 Aligned_cols=47 Identities=13% Similarity=0.357 Sum_probs=26.5
Q ss_pred ccEEEEeccccccccCCCCH-HHHHHHHHHHHhCCCCCEEEEeecCChhhH
Q 010563 159 LNLVAIDEAHCISSWGHDFR-PSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (507)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr-~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 208 (507)
.++++|||+|.+..... +. ..+.-+..... .+.+++++|++.++...
T Consensus 92 ~dlLilDDi~~~~~~~~-~~~~l~~l~n~~~~--~~~~illits~~~p~~l 139 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEE-WELAIFDLFNRIKE--QGKTLLLISADCSPHAL 139 (229)
T ss_pred CCEEEEeChhhhcCChH-HHHHHHHHHHHHHH--cCCcEEEEeCCCChHHc
Confidence 68999999999753211 11 11122222222 24567788888776644
No 210
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.54 E-value=0.014 Score=56.69 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=56.9
Q ss_pred HHcCCCEEEEcCCCchHHHH-HHHHH--hcC-CCeEEEecChHHHHHHHHHHHHHc--CCceEEec--CCCCHHHHHHHH
Q 010563 50 VLSGRDCFCLMPTGGGKSMC-YQIPA--LAK-PGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS--STQTMQVKTKIY 121 (507)
Q Consensus 50 i~~g~d~lv~apTG~GKTl~-~~lp~--l~~-~~~~lvi~P~~~L~~q~~~~l~~~--gi~~~~~~--~~~~~~~~~~~~ 121 (507)
+..|.-+++.||+|+|||.. .++.. ... +..+++++--. -..+...++... |+...... ............
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAF 105 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHH
Confidence 34566788999999999953 33322 223 56777776321 123333333331 33322111 111222222222
Q ss_pred HHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 010563 122 EDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (507)
Q Consensus 122 ~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (507)
..+.. .+.+ .++-.+....-......+........+++||||..+.+..
T Consensus 106 ~~~~~-~~~l-~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 106 DEFEG-TGRL-FMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHhcC-CCcE-EEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 33221 1112 2222222222233444444444445689999999998864
No 211
>PRK06921 hypothetical protein; Provisional
Probab=96.54 E-value=0.05 Score=52.71 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCCEEEEcCCCchHHHHHH-H-HHhcCC-CeEEEecChHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ-I-PALAKP-GIVLVVSPLIALMEN 93 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~-l-p~l~~~-~~~lvi~P~~~L~~q 93 (507)
+..+++.+|+|+|||.... + -.+... +..++.++...++.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 5679999999999994332 2 223333 555555555555543
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.50 E-value=0.043 Score=52.26 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHc-------C-CCEEEEcCCCchHHHHHHH--HHhcCCCeEEEecChHHHHHH
Q 010563 41 DKQLDAIQAVLS-------G-RDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMEN 93 (507)
Q Consensus 41 ~~Q~~~i~~i~~-------g-~d~lv~apTG~GKTl~~~l--p~l~~~~~~lvi~P~~~L~~q 93 (507)
+.|..++..+.+ + ..+++.+++|+|||..... -.+...+..+++.+...|+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 456656554432 1 3689999999999954332 223344444455555555543
No 213
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.49 E-value=0.014 Score=49.54 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=25.1
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcC-CC--eEEEecChHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPALAK-PG--IVLVVSPLIAL 90 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~l~~-~~--~~lvi~P~~~L 90 (507)
++.+++.+|+|+|||.....-+... .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 4568999999999997665433322 22 46777666543
No 214
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.47 E-value=0.014 Score=55.52 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
..+++.||+|+|||...
T Consensus 46 ~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 46 GYIYLWSREGAGRSHLL 62 (235)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999543
No 215
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.46 E-value=0.0096 Score=60.55 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHH------HcCCCEEEEcCCCchHHHHHHH--HHhc-CCCeEEEecChHHHH
Q 010563 38 QFRDKQLDAIQAV------LSGRDCFCLMPTGGGKSMCYQI--PALA-KPGIVLVVSPLIALM 91 (507)
Q Consensus 38 ~~r~~Q~~~i~~i------~~g~d~lv~apTG~GKTl~~~l--p~l~-~~~~~lvi~P~~~L~ 91 (507)
+|.+-|++++..+ ..+..+++.+|-|+|||..+-. -.+. .+..+++++||-.-+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHH
Confidence 3678899998888 5678899999999999976432 1222 345688888885433
No 216
>PRK04296 thymidine kinase; Provisional
Probab=96.43 E-value=0.009 Score=54.81 Aligned_cols=32 Identities=28% Similarity=0.144 Sum_probs=21.3
Q ss_pred CEEEEcCCCchHHHHHHHHH---hcCCCeEEEecC
Q 010563 55 DCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSP 86 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P 86 (507)
-.++.+|+|+|||...+--+ ...+.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 36789999999995543222 234567777766
No 217
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.43 E-value=0.29 Score=54.70 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHh-c----CCCeEEEecChHHHHHHHHHHHHHc
Q 010563 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A----KPGIVLVVSPLIALMENQVIGLKEK 101 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~--lp~l-~----~~~~~lvi~P~~~L~~q~~~~l~~~ 101 (507)
..|+|-|.+|+.. ....++|.|..|||||.+.. +.-+ . .+..+|+++-|+.-+.+..+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4589999999975 34679999999999995543 2222 2 2357899999988888877777653
No 218
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.38 E-value=0.018 Score=52.37 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=32.1
Q ss_pred EEEEcCCCchHHHHHH---HHHhcCCCeEEEecChHHHHHHHHHHHHHcCCc
Q 010563 56 CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~---lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~ 104 (507)
+++.+|+|+|||...+ ...+..+..+++++.- +-..+..+.+.++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGWD 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHcCCC
Confidence 6889999999996432 2334556678877643 4455666677776653
No 219
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.33 E-value=0.0056 Score=60.58 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=45.6
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHH---Hhc----CCCeEEEecChHHHHHHHHHHHHH
Q 010563 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp---~l~----~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
+++-|.+++.. ..+.++|.|+.|||||.+.+-- .+. .+..++++++|++.+.+..+++..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 56889999988 6778999999999999765432 222 345799999999999888888776
No 220
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.29 E-value=0.03 Score=54.38 Aligned_cols=43 Identities=28% Similarity=0.323 Sum_probs=25.0
Q ss_pred CccEEEEeccccccccCCCC-HHHHHHHHHHHHhCCCCCEEEEeec
Q 010563 158 LLNLVAIDEAHCISSWGHDF-RPSYRKLSSLRNYLPDVPILALTAT 202 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~f-r~~~~~l~~l~~~~~~~~~i~lSAT 202 (507)
.++++||||.|.++.....- |.....|..+.+.+ ++|+|++ +|
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-~ipiV~v-Gt 188 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-QIPIVGV-GT 188 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-CCCeEEe-cc
Confidence 38899999999998754221 22222233332222 6788866 44
No 221
>PRK14974 cell division protein FtsY; Provisional
Probab=96.26 E-value=0.27 Score=49.20 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=32.5
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHH-hCCCCCEEEEeecCChhhHHHHH
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YLPDVPILALTATAAPKVQKDVM 212 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-~~~~~~~i~lSAT~~~~~~~~i~ 212 (507)
..++|+||.++++.. -...+..|..+.. ..|+..++.++||..........
T Consensus 222 ~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 222 GIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred CCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 368999999998642 2333445554443 23666688889988766554443
No 222
>PLN03025 replication factor C subunit; Provisional
Probab=96.22 E-value=0.046 Score=54.54 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHH
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i 211 (507)
..++++|||+|.+.... -..|......+++.-.++++++..+.....+
T Consensus 99 ~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~i~~~L 146 (319)
T PLN03025 99 RHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSKIIEPI 146 (319)
T ss_pred CeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCccccchhH
Confidence 36899999999986522 2445555566565555666666554444433
No 223
>PF13173 AAA_14: AAA domain
Probab=96.16 E-value=0.03 Score=47.72 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=27.4
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 010563 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (507)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (507)
-.+|+|||+|.+.+|. ..+..+....++.+++ +|++....
T Consensus 62 ~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~ii-~tgS~~~~ 101 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWE-------DALKFLVDNGPNIKII-LTGSSSSL 101 (128)
T ss_pred CcEEEEehhhhhccHH-------HHHHHHHHhccCceEE-EEccchHH
Confidence 5689999999998876 5666666665555544 45554433
No 224
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.15 E-value=0.0066 Score=55.04 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=25.4
Q ss_pred cCCCEEEEcCCCchHHHHHHHH--HhcCCCeEEEecChHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQIP--ALAKPGIVLVVSPLIALMEN 93 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~lp--~l~~~~~~lvi~P~~~L~~q 93 (507)
+++++++.+|+|+|||...... .+...+..+..++..+|+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 4678999999999999543322 23335555556667677654
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.15 E-value=0.077 Score=52.94 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=26.8
Q ss_pred CCCEEEEcCCCchHHHHHH--HHHhcCCCeEEEecChHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMEN 93 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~--lp~l~~~~~~lvi~P~~~L~~q 93 (507)
++.+++.||||+|||.... ...+...+..++..+...|+.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 5789999999999995332 2223344555566666666544
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.17 Score=51.29 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=33.7
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHH-hCCCCCEEEEeecCChhhHHHHHHHhC
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YLPDVPILALTATAAPKVQKDVMESLC 216 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-~~~~~~~i~lSAT~~~~~~~~i~~~l~ 216 (507)
..++|+||-+-+... -......+..+.. ..|...++.+|||........+.+.+.
T Consensus 320 ~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 320 RVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred CCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 478999998866432 1233445555443 234445677899887766566666553
No 227
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.10 E-value=0.13 Score=54.61 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=78.5
Q ss_pred hHHHHHHHHH----HhcCCccEEEEeccchhHHHHHHHHHhCCC-------ceeEecCCCCHHHHHHHHHHHh----cCC
Q 010563 244 DAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSAGGI-------SCAAYHAGLNDKARSSVLDDWI----SSR 308 (507)
Q Consensus 244 ~~~~~l~~~l----~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~-------~~~~~h~~l~~~~R~~~~~~f~----~g~ 308 (507)
..++.|...+ .--+ +-+++|++|.+-...+...+.+.|+ +.+++-..-+ -..+++.|. .|.
T Consensus 612 ~~l~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 612 EMIKDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGR 687 (821)
T ss_pred HHHHHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCC
Confidence 3444444443 3334 5599999999999999999987664 3344544444 244555555 455
Q ss_pred ceEEEEe--CcccccccCCC--ccEEEEeCCCCC--------------------------------HHHHHHHhcccCCC
Q 010563 309 KQVVVAT--VAFGMGIDRKD--VRLVCHFNIPKS--------------------------------MEAFYQESGRAGRD 352 (507)
Q Consensus 309 ~~VLVaT--~a~~~GiD~p~--v~~VI~~~~p~s--------------------------------~~~y~Q~~GRagR~ 352 (507)
--+|+|. .-++.|||+.| .|.||..++|.. +...-|-+|||-|.
T Consensus 688 GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH 767 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH 767 (821)
T ss_pred CeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566664 55889999988 799999998851 12336899999998
Q ss_pred CCCceEEEEec
Q 010563 353 QLPSKSLLYYG 363 (507)
Q Consensus 353 g~~~~~i~~~~ 363 (507)
-+.=.++++++
T Consensus 768 ~~DYA~i~LlD 778 (821)
T KOG1133|consen 768 RKDYASIYLLD 778 (821)
T ss_pred hccceeEEEeh
Confidence 86666666654
No 228
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.08 E-value=0.12 Score=45.33 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=22.4
Q ss_pred EEEEcCCCchHHHHHHHH---HhcCCCeEEEecChHHH
Q 010563 56 CFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIAL 90 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp---~l~~~~~~lvi~P~~~L 90 (507)
+++.+|+|+|||...... +...++.++++..-..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 578999999999644322 12245677777654433
No 229
>PRK08116 hypothetical protein; Validated
Probab=96.05 E-value=0.15 Score=49.45 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=23.6
Q ss_pred CEEEEcCCCchHHHHHHHH--HhcCCCeEEEecChHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIP--ALAKPGIVLVVSPLIALMEN 93 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp--~l~~~~~~lvi~P~~~L~~q 93 (507)
.+++.|++|+|||...... .+...+..++..+...|+..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3899999999999543321 22223444555555566544
No 230
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.04 E-value=0.25 Score=51.25 Aligned_cols=55 Identities=22% Similarity=0.158 Sum_probs=34.6
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHH-h-CCCCCEEEEeecCChhhHHHHHHHhC
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-Y-LPDVPILALTATAAPKVQKDVMESLC 216 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-~-~~~~~~i~lSAT~~~~~~~~i~~~l~ 216 (507)
..++|+||.+-.... -......+..+.. . .+....+.++||........+...+.
T Consensus 299 ~~DlVlIDt~G~~~~----d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 299 DCDVILIDTAGRSQR----DKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCEEEEeCCCCCCC----CHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 478999999865321 1122334555544 1 23344788999999888887777664
No 231
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.00 E-value=0.19 Score=50.80 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=35.3
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCC-CEEEEeecCChhhHHHHHHHhCCCC
Q 010563 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV-PILALTATAAPKVQKDVMESLCLQN 219 (507)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~-~~i~lSAT~~~~~~~~i~~~l~~~~ 219 (507)
.++|.||=+-+ ++.-......|..+....++. -.+.+|||.-..+...+...+..-+
T Consensus 282 ~d~ILVDTaGr----s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~ 339 (407)
T COG1419 282 CDVILVDTAGR----SQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFP 339 (407)
T ss_pred CCEEEEeCCCC----CccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCC
Confidence 57888888754 111112223444444433333 3588999999999999988876543
No 232
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.033 Score=53.49 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=41.2
Q ss_pred CCCCCcHHHHHHHHHHH-------cCCCEEEEcCCCchHHHHHHH--HHhcCCCeEEEecChHHHHHHHHHH
Q 010563 35 GHAQFRDKQLDAIQAVL-------SGRDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMENQVIG 97 (507)
Q Consensus 35 g~~~~r~~Q~~~i~~i~-------~g~d~lv~apTG~GKTl~~~l--p~l~~~~~~lvi~P~~~L~~q~~~~ 97 (507)
.|.-....+..++..+. ++.++++.||+|+|||..... -.+...+..+.++++-+|+.+....
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 34434445555554433 567999999999999954332 2233667888888888888764443
No 233
>PRK05973 replicative DNA helicase; Provisional
Probab=95.96 E-value=0.19 Score=47.55 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=52.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCcHHHHHH---------HHHHHcCCCEEEEcCCCchHHHHHH---HHHhcCCCeEEEe
Q 010563 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDA---------IQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVV 84 (507)
Q Consensus 17 ~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~---------i~~i~~g~d~lv~apTG~GKTl~~~---lp~l~~~~~~lvi 84 (507)
...+++++.+...-.+. ||.+..-....+ ..-+..|.-+++.|++|+|||...+ .-+..++..++++
T Consensus 20 ~~~~~~~~~~~~~a~~~-g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyf 98 (237)
T PRK05973 20 AQNIPLHEALDRIAAEE-GFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFF 98 (237)
T ss_pred hcCCcHHHHHHHHHHHh-ccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 34577888888777774 887544333332 1222244567889999999995433 2233456677777
Q ss_pred cChHHHHHHHHHHHHHcCCc
Q 010563 85 SPLIALMENQVIGLKEKGIA 104 (507)
Q Consensus 85 ~P~~~L~~q~~~~l~~~gi~ 104 (507)
+---. ..+..+++..+|+.
T Consensus 99 SlEes-~~~i~~R~~s~g~d 117 (237)
T PRK05973 99 TLEYT-EQDVRDRLRALGAD 117 (237)
T ss_pred EEeCC-HHHHHHHHHHcCCC
Confidence 63322 35666777777653
No 234
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.85 E-value=0.13 Score=58.57 Aligned_cols=54 Identities=24% Similarity=0.141 Sum_probs=40.7
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHHH--HHhc-CCCeEEEecChHHHH
Q 010563 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQI--PALA-KPGIVLVVSPLIALM 91 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d-~lv~apTG~GKTl~~~l--p~l~-~~~~~lvi~P~~~L~ 91 (507)
.|++.|.+|+..++.+++ +++.++.|+|||...-. -++. .+..++++.||-.-+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHH
Confidence 489999999999998765 67999999999965221 1222 356788899986544
No 235
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.073 Score=59.13 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=26.8
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 208 (507)
++..++||||||.|.. .....|.+.....|..-++++..|-...+.
T Consensus 118 gk~KViIIDEAh~LT~------eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR------SSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred CCcEEEEEechHhcCH------HHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 5578999999999864 233455555555444333444444444433
No 236
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.042 Score=60.75 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=62.3
Q ss_pred cchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC----C-CceeE-ecCCCCHHHHHHHHHHHhcCCceEEE
Q 010563 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----G-ISCAA-YHAGLNDKARSSVLDDWISSRKQVVV 313 (507)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~----g-~~~~~-~h~~l~~~~R~~~~~~f~~g~~~VLV 313 (507)
......+..+..+.-...+.++++.++|.--+.++++.|++. | ..+.. ||+.|+.+++++.+++|.+|+.+|||
T Consensus 107 GvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIli 186 (1187)
T COG1110 107 GVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILI 186 (1187)
T ss_pred CCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEE
Confidence 333445555555554455578899999999999999988764 2 33333 99999999999999999999999999
Q ss_pred EeCccc
Q 010563 314 ATVAFG 319 (507)
Q Consensus 314 aT~a~~ 319 (507)
+|+.|-
T Consensus 187 tTs~FL 192 (1187)
T COG1110 187 TTSQFL 192 (1187)
T ss_pred EeHHHH
Confidence 999874
No 237
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.81 E-value=0.27 Score=54.42 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=21.3
Q ss_pred CcHHHHHHHHHHH----cC---CCE-EEEcCCCchHHHHH
Q 010563 39 FRDKQLDAIQAVL----SG---RDC-FCLMPTGGGKSMCY 70 (507)
Q Consensus 39 ~r~~Q~~~i~~i~----~g---~d~-lv~apTG~GKTl~~ 70 (507)
-|.-|.+.|..++ .| ..+ ++.|+||+|||++.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 4566666654443 22 234 59999999999875
No 238
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.13 Score=51.94 Aligned_cols=53 Identities=21% Similarity=0.215 Sum_probs=29.8
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHh
Q 010563 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (507)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l 215 (507)
.++|+||++-.... -......+..+.... +...++.++||.......++...+
T Consensus 216 ~DlVLIDTaG~~~~----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 216 KHMVLIDTIGMSQR----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred CCEEEEcCCCCCcc----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 58999999954211 011112333332221 223488999999888777665543
No 239
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.79 E-value=0.12 Score=52.47 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
..+++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999654
No 240
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.088 Score=56.60 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=26.4
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 208 (507)
+...+|||||+|.+.. .....|....+..+...++++++|-...+.
T Consensus 118 g~~kVIIIDEad~Lt~------~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 118 GRYKVFIIDEAHMLTR------EAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CCceEEEEEChHhCCH------HHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 4468999999999853 223444444444334445555555544433
No 241
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.76 E-value=0.076 Score=56.09 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=16.6
Q ss_pred CCEEEEcCCCchHHHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~ 74 (507)
+.+++.||.|+|||.++.+-+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999997765443
No 242
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.67 E-value=0.1 Score=57.56 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=16.1
Q ss_pred CEEEEcCCCchHHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~ 74 (507)
.+++.+|+|+|||.....-+
T Consensus 54 slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999997654433
No 243
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.084 Score=56.01 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=26.2
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (507)
.++.+++||||+|.++.- ....|.+..+..|..-.++|.+|-+..
T Consensus 117 ~~~~kV~iIDE~~~ls~~------a~naLLk~LEepp~~~~fIlattd~~k 161 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGH------SFNALLKTLEEPPSHVKFILATTDHHK 161 (509)
T ss_pred cCCcEEEEEEChHhcCHH------HHHHHHHHHhccCCCeEEEEEECChHh
Confidence 345789999999998752 234455555555533334444454333
No 244
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.64 E-value=0.086 Score=54.65 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.6
Q ss_pred CEEEEcCCCchHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp 73 (507)
.+++.||+|+|||.....-
T Consensus 38 ~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 38 SMILWGPPGTGKTTLARII 56 (413)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999765543
No 245
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.59 E-value=0.039 Score=65.10 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHH--HHHHhc-----CCCeEEEecChHHHHHHHHHHHHHcCCceE
Q 010563 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY--QIPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~--~lp~l~-----~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~ 106 (507)
.|++.|.+|+..++.+ +-+++.++.|+|||... ++.++. .+..++.+.||-.-+. .|.+.|+.+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~----~L~e~Gi~A~ 908 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG----EMRSAGVDAQ 908 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH----HHHHhCchHh
Confidence 5899999999999966 55889999999999663 222221 2346788999965543 4444565543
No 246
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.59 E-value=0.051 Score=52.41 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=25.5
Q ss_pred HHHHHHHHHHc---C---CCEEEEcCCCchHHHHHHHHHhc
Q 010563 42 KQLDAIQAVLS---G---RDCFCLMPTGGGKSMCYQIPALA 76 (507)
Q Consensus 42 ~Q~~~i~~i~~---g---~d~lv~apTG~GKTl~~~lp~l~ 76 (507)
+|..++..+.+ + -..+..+|+|+|||-+..+.+-+
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 67777766542 2 35899999999999887665543
No 247
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.55 E-value=0.064 Score=58.45 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=27.4
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
++.+++||||+|.|+.- ....|.+.++..|..-+++|++|-...+
T Consensus 118 gr~KVIIIDEah~LT~~------A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH------AFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred CCceEEEEeChhhCCHH------HHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 44789999999998752 2344555555555444555555544443
No 248
>PRK04195 replication factor C large subunit; Provisional
Probab=95.54 E-value=0.1 Score=55.26 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=24.7
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 010563 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (507)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT 202 (507)
..+|||||+|.+.... -+.....|..+... ++.|+|+.+..
T Consensus 99 ~kvIiIDEaD~L~~~~--d~~~~~aL~~~l~~-~~~~iIli~n~ 139 (482)
T PRK04195 99 RKLILLDEVDGIHGNE--DRGGARAILELIKK-AKQPIILTAND 139 (482)
T ss_pred CeEEEEecCccccccc--chhHHHHHHHHHHc-CCCCEEEeccC
Confidence 5789999999986522 23334445555442 45667665543
No 249
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.52 E-value=0.07 Score=49.62 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.5
Q ss_pred CEEEEcCCCchHHHHHHHHHh
Q 010563 55 DCFCLMPTGGGKSMCYQIPAL 75 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~l 75 (507)
++++.+|+|.|||..+.+-+-
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHh
Confidence 589999999999976555443
No 250
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.51 E-value=0.12 Score=53.81 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=26.1
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHH
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~ 209 (507)
..++++|||+|.+..+...-...+..+..+.. .+. .+++|++.++....
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k-~IIlts~~~p~~l~ 250 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGK-LIVISSTCAPQDLK 250 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCC-cEEEecCCCHHHHh
Confidence 37899999999987543222222322333332 234 45556655544333
No 251
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.50 E-value=0.072 Score=51.48 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
.++++.+|+|+|||...-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 3689999999999976543
No 252
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.27 Score=47.32 Aligned_cols=120 Identities=16% Similarity=0.203 Sum_probs=65.1
Q ss_pred HHHHcCC-----CEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHH
Q 010563 48 QAVLSGR-----DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122 (507)
Q Consensus 48 ~~i~~g~-----d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~ 122 (507)
+.++.|+ -+++.+|+|+|||..+-..+-..+ .+.+-+....|+..|+-.-.+ .
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGESEk---------------L------ 213 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEK---------------L------ 213 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccHHH---------------H------
Confidence 4556664 489999999999943333333333 566666666777654422111 1
Q ss_pred HhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCC-CHHHHHHHH-HHHHhCC-----CCC
Q 010563 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD-FRPSYRKLS-SLRNYLP-----DVP 195 (507)
Q Consensus 123 ~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~-fr~~~~~l~-~l~~~~~-----~~~ 195 (507)
...|..+-.....++|.|||++.+..-+.+ -...-++|. .+.-+.. +--
T Consensus 214 ------------------------VknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 214 ------------------------VKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred ------------------------HHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 112222222334678999999977543221 122223332 1222222 345
Q ss_pred EEEEeecCChhhHHHHHH
Q 010563 196 ILALTATAAPKVQKDVME 213 (507)
Q Consensus 196 ~i~lSAT~~~~~~~~i~~ 213 (507)
++.|.||-.|-+....++
T Consensus 270 vLVLgATNiPw~LDsAIR 287 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIR 287 (439)
T ss_pred eEEEecCCCchhHHHHHH
Confidence 888999988766654433
No 253
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.34 Score=49.11 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
.++++.+|||+|||.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 46999999999999764
No 254
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.46 E-value=0.084 Score=58.21 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=65.2
Q ss_pred CccEEEEeccchhHHHHHHHHHhC-CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (507)
+.++||.++++..+.++.+.|++. |..+..+||+++..+|.+...+..+|+.+|+|+|...-. +.++++.+||...
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 457999999999999999999875 788999999999999999999999999999999975332 5567888888555
No 255
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.45 E-value=0.067 Score=53.09 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.7
Q ss_pred CCCCcHHHHHHHHHHH----cCC---CEEEEcCCCchHHHHH
Q 010563 36 HAQFRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 36 ~~~~r~~Q~~~i~~i~----~g~---d~lv~apTG~GKTl~~ 70 (507)
++.++|||..++..+. .|+ -.++.+|.|.||+...
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA 43 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA 43 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 4678999999998776 333 4889999999999544
No 256
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.43 E-value=0.04 Score=60.86 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=65.0
Q ss_pred CCccEEEEeccchhHHHHHHHHHh----CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc-ccccccCCCccEEE
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GiD~p~v~~VI 331 (507)
.+.+++|.++|+.-+.+.++.+++ .|+++..+||+++..+|..+++.+.+|+.+|+|+|.+ +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 345799999999999888887765 3789999999999999999999999999999999976 45567788898888
No 257
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.42 E-value=0.07 Score=50.80 Aligned_cols=147 Identities=20% Similarity=0.178 Sum_probs=67.6
Q ss_pred cCCCEEEEcCCCchHHHHHH-H--HHhcC-CCeEEEec---ChHHHHHHHHHHHHHcCCceEEecCC-CCHHHHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ-I--PALAK-PGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYED 123 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~-l--p~l~~-~~~~lvi~---P~~~L~~q~~~~l~~~gi~~~~~~~~-~~~~~~~~~~~~ 123 (507)
.|.-+++.|+||+|||...+ + -.... +..+++++ |...++....... .|+....+..+ ............
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASE--SGISLSKLRTGSLSDEDWERLAEA 89 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHHHHHHH
Confidence 45567899999999995322 2 12233 67788887 4445554432221 33322111111 111111111111
Q ss_pred hhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC--CCCHH----HHHHHHHHHHhCCCCCEE
Q 010563 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--HDFRP----SYRKLSSLRNYLPDVPIL 197 (507)
Q Consensus 124 ~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g--~~fr~----~~~~l~~l~~~~~~~~~i 197 (507)
..... ...+.+.....+........+........+++||||=.+.+..-. .+-+. .+..|..+...+ +++++
T Consensus 90 ~~~~~-~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~-~~~ii 167 (242)
T cd00984 90 IGELK-ELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKEL-NVPVI 167 (242)
T ss_pred HHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHh-CCeEE
Confidence 11110 123333222222223344444444444468999999999875422 11111 123333333332 67777
Q ss_pred EEeec
Q 010563 198 ALTAT 202 (507)
Q Consensus 198 ~lSAT 202 (507)
+++-.
T Consensus 168 ~~~q~ 172 (242)
T cd00984 168 ALSQL 172 (242)
T ss_pred Eeccc
Confidence 77644
No 258
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.089 Score=54.32 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=22.8
Q ss_pred CEEEEcCCCchHHHHHHHHHhc-CCCeEEEecCh
Q 010563 55 DCFCLMPTGGGKSMCYQIPALA-KPGIVLVVSPL 87 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~l~-~~~~~lvi~P~ 87 (507)
.+++.+|.|+|||..+.-.++. .-+.+=+++|-
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe 573 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE 573 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChH
Confidence 5899999999999544433443 34556667775
No 259
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.11 Score=55.98 Aligned_cols=51 Identities=20% Similarity=0.338 Sum_probs=29.4
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHH
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 212 (507)
.++.+++||||+|.|+.- ....|.+..+..|..-+++|..|-...+...|.
T Consensus 122 ~gr~KViIIDEah~Ls~~------AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH------AFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred cCCceEEEEEChHhcCHH------HHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 455789999999998752 233444444444433355555565555444443
No 260
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.40 E-value=0.15 Score=43.09 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=14.3
Q ss_pred EEEEcCCCchHHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp 73 (507)
+++.+|+|+|||.....-
T Consensus 1 ill~G~~G~GKT~l~~~l 18 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARAL 18 (132)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHH
Confidence 589999999999765433
No 261
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.39 E-value=0.39 Score=49.36 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
.++++.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999754
No 262
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.39 E-value=0.059 Score=64.44 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=46.3
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHH--HHHhc-----CCCeEEEecChHHHHHHHHHHHHHcCCceEE
Q 010563 38 QFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQ--IPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~--d~lv~apTG~GKTl~~~--lp~l~-----~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~ 107 (507)
.|++.|.+|+..++.+. -+++.+..|+|||...- +.++. .+..++.+.||-.-+. .|+..|+.+..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk----~L~e~Gi~A~T 1041 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG----EMRSAGVDAQT 1041 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH----HHHhcCcchhh
Confidence 58999999999999864 57899999999996532 22221 1346788899965543 45556665443
No 263
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.37 E-value=0.16 Score=50.72 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHHcCC----CEEEEcCCCchHHHHH
Q 010563 39 FRDKQLDAIQAVLSGR----DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g~----d~lv~apTG~GKTl~~ 70 (507)
.+|||...+..++... -.++.+|.|.||+..+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 5799999999888543 4789999999999554
No 264
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.19 Score=52.79 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=29.1
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i 211 (507)
+..+++||||+|.++.. .+..|....+..|..-++.|.+|-...+...+
T Consensus 115 ~~~KVvIIDEah~Ls~~------A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI 163 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNS------AFNALLKTLEEPAPHVKFILATTEVKKIPVTI 163 (491)
T ss_pred CCceEEEEeChHhCCHH------HHHHHHHHHhCCCCCeEEEEEeCChHHHHHHH
Confidence 44789999999998752 23455555555444334555556555544433
No 265
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.35 E-value=0.11 Score=48.73 Aligned_cols=56 Identities=11% Similarity=0.196 Sum_probs=27.6
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh---hHHHHHHHh
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK---VQKDVMESL 215 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~---~~~~i~~~l 215 (507)
..++++||+.|.+......-...+.-+..+.. .+.++|+.|..++.. ...++...+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~--~~k~li~ts~~~P~~l~~~~~~L~SRl 155 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIE--SGKQLILTSDRPPSELSGLLPDLRSRL 155 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH--TTSEEEEEESS-TTTTTTS-HHHHHHH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHh--hCCeEEEEeCCCCccccccChhhhhhH
Confidence 37899999999986521000111222222222 255666666565543 234455544
No 266
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.69 Score=47.45 Aligned_cols=122 Identities=19% Similarity=0.175 Sum_probs=66.1
Q ss_pred CEEEEcCCCchHHHHHH-HHH---hcCCCeEEEec--ChHHHHHHHHHHHH-HcCCceEEecCCCCHHHHHHHHHHhhcC
Q 010563 55 DCFCLMPTGGGKSMCYQ-IPA---LAKPGIVLVVS--PLIALMENQVIGLK-EKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~-lp~---l~~~~~~lvi~--P~~~L~~q~~~~l~-~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (507)
-+++++|+|+|||.... +.. +..+.++.++. +.+..+.+|..... ..|++..... .
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~------~----------- 287 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK------D----------- 287 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH------H-----------
Confidence 37789999999996544 332 12334454444 55666666555543 3444332110 0
Q ss_pred CCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC----CCCCEEEEeecC
Q 010563 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVPILALTATA 203 (507)
Q Consensus 128 ~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~----~~~~~i~lSAT~ 203 (507)
...+.........++|+||=+-.... -......|..+.... |.-.++.++||.
T Consensus 288 -------------------~~~l~~~l~~~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 288 -------------------IKKFKETLARDGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred -------------------HHHHHHHHHhCCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 00111111123478899997654321 123445555555443 334578999999
Q ss_pred ChhhHHHHHHHhC
Q 010563 204 APKVQKDVMESLC 216 (507)
Q Consensus 204 ~~~~~~~i~~~l~ 216 (507)
......++.....
T Consensus 345 ~~~~~~~~~~~f~ 357 (432)
T PRK12724 345 SYHHTLTVLKAYE 357 (432)
T ss_pred CHHHHHHHHHHhc
Confidence 9877777766553
No 267
>PRK05642 DNA replication initiation factor; Validated
Probab=95.31 E-value=0.1 Score=49.53 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=13.3
Q ss_pred CCEEEEcCCCchHHHH
Q 010563 54 RDCFCLMPTGGGKSMC 69 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~ 69 (507)
..+++.||+|+|||..
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3578999999999954
No 268
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.25 E-value=0.14 Score=58.60 Aligned_cols=69 Identities=28% Similarity=0.218 Sum_probs=47.0
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHH--HHh-cCCCeEEEecChHHHHHHHHHHHHH-cCCceEEec
Q 010563 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g-~d~lv~apTG~GKTl~~~l--p~l-~~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~ 109 (507)
..|++.|.+++..+..+ +-+++.++.|+|||...-. -+. ..+..++.+.||-.-+ ..|.+ .|+.+..++
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA----~~L~e~~Gi~a~TIa 453 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAA----EGLEKEAGIQSRTLS 453 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHH----HHHHHhhCCCeeeHH
Confidence 35899999999988654 4578999999999965322 222 2456788899985544 34433 566655443
No 269
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.24 E-value=0.053 Score=66.33 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=45.6
Q ss_pred CCCcHHHHHHHHHHHcCC--CEEEEcCCCchHHHHH------HHHHhc-CCCeEEEecChHHHHHHHHHHHHHcCCce
Q 010563 37 AQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCY------QIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~--d~lv~apTG~GKTl~~------~lp~l~-~~~~~lvi~P~~~L~~q~~~~l~~~gi~~ 105 (507)
..|++.|.+|+..++.+. -+++.++.|+|||... +.-+.. .+..++.+.||-.-+ ..|++.|+.+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa----~~L~~~g~~a 1091 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV----GELKSAGVQA 1091 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH----HHHHhcCCch
Confidence 458999999999998764 4678899999999655 112222 345788889995544 4455556654
No 270
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.23 E-value=0.13 Score=48.39 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchHHHH
Q 010563 53 GRDCFCLMPTGGGKSMC 69 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~ 69 (507)
++.+++.+|+|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34689999999999943
No 271
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.12 Score=55.61 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=26.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
++.+++||||+|.++.- ....|.......|+.-.+++++|-....
T Consensus 117 gk~KV~IIDEVh~LS~~------A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH------SFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred CCcEEEEEechHhcCHH------HHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 45689999999998752 2344555555544433455555544443
No 272
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.20 E-value=2.1 Score=52.87 Aligned_cols=202 Identities=12% Similarity=0.071 Sum_probs=101.6
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHH--HHHhc-CCCeEEEecChHHHHHHHHHHHHH-cCCceEEecCC
Q 010563 38 QFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSST 111 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~--d~lv~apTG~GKTl~~~--lp~l~-~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~~~ 111 (507)
.|.+.|.+++..++..+ -.++.++.|+|||.... +-++. .+..+++++|+-.-+.. |.. .|+.+..++
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~----L~e~~g~~A~Ti~-- 502 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQE----LRQKIPRLASTFI-- 502 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH----HHHHhcchhhhHH--
Confidence 47899999999998763 47899999999996532 22222 45689999999764433 333 233322111
Q ss_pred CCHHHHHHHHHHhhcCCCcccEEEECcccccC-hhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHh
Q 010563 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (507)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~ 190 (507)
.....+..+ +...| .+|+ ........-++||||||-.++. ..+..|...
T Consensus 503 -------~~l~~l~~~-----------~~~~tv~~fl---~~~~~l~~~~vlIVDEAsMl~~---------~~~~~Ll~~ 552 (1960)
T TIGR02760 503 -------TWVKNLFND-----------DQDHTVQGLL---DKSSPFSNKDIFVVDEANKLSN---------NELLKLIDK 552 (1960)
T ss_pred -------HHHHhhccc-----------ccchhHHHhh---cccCCCCCCCEEEEECCCCCCH---------HHHHHHHHH
Confidence 111111110 01111 0111 1111122357999999998875 333344432
Q ss_pred C--CCCCEEEEeecC--C----hhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHH-HHHhc-CCcc
Q 010563 191 L--PDVPILALTATA--A----PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLKAN-GDTC 260 (507)
Q Consensus 191 ~--~~~~~i~lSAT~--~----~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~-~l~~~-~~~~ 260 (507)
. .+.++|++--+. + -.+...+.. -++.... +.......+-. .+...+ ....+..+.+ ++... ....
T Consensus 553 a~~~garvVlvGD~~QL~sV~aG~~f~~L~~-~gv~t~~-l~~i~rq~~~v-~i~~~~-~~~r~~~ia~~y~~L~~~r~~ 628 (1960)
T TIGR02760 553 AEQHNSKLILLNDSAQRQGMSAGSAIDLLKE-GGVTTYA-WVDTKQQKASV-EISEAV-DKLRVDYIASAWLDLTPDRQN 628 (1960)
T ss_pred HhhcCCEEEEEcChhhcCccccchHHHHHHH-CCCcEEE-eecccccCcce-eeeccC-chHHHHHHHHHHHhcccccCc
Confidence 2 367788776542 2 245554443 3332111 11111111111 111111 1233333333 33322 3335
Q ss_pred EEEEeccchhHHHHHHHHH
Q 010563 261 AIVYCLERTTCDELSAYLS 279 (507)
Q Consensus 261 ~IVf~~s~~~~~~l~~~L~ 279 (507)
++|+..+.++...|....+
T Consensus 629 tliv~~t~~dr~~Ln~~iR 647 (1960)
T TIGR02760 629 SQVLATTHREQQDLTQIIR 647 (1960)
T ss_pred eEEEcCCcHHHHHHHHHHH
Confidence 8999999888877776654
No 273
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.15 E-value=0.17 Score=51.49 Aligned_cols=57 Identities=30% Similarity=0.267 Sum_probs=33.5
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHHHH-HHH-h-cCCCeEEEecChHHHHHHHHHHHHHcCC
Q 010563 46 AIQAVLSG-----RDCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (507)
Q Consensus 46 ~i~~i~~g-----~d~lv~apTG~GKTl~~~-lp~-l-~~~~~~lvi~P~~~L~~q~~~~l~~~gi 103 (507)
-++.++.| .-+++.+++|+|||...+ +.. + ..++++++++-... ..|...+..++|+
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~ 134 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGI 134 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCC
Confidence 35666653 457899999999995433 322 2 23467888875432 2344444555543
No 274
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.14 Score=53.81 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=14.3
Q ss_pred EEEEcCCCchHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~l 72 (507)
+++.||+|+|||....+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999976544
No 275
>PRK09183 transposase/IS protein; Provisional
Probab=95.12 E-value=0.21 Score=48.18 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=25.6
Q ss_pred HHcCCCEEEEcCCCchHHHHHHHH---HhcCCCeEEEecChHHHHH
Q 010563 50 VLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALME 92 (507)
Q Consensus 50 i~~g~d~lv~apTG~GKTl~~~lp---~l~~~~~~lvi~P~~~L~~ 92 (507)
+..|.++++.+|+|+|||...... +...+..++++ +..+|..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHH
Confidence 456788999999999999543322 12333345444 4445543
No 276
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.09 E-value=0.12 Score=54.98 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=64.5
Q ss_pred CccEEEEeccchhHHHHHHHHHhC-CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (507)
+.++||.++++.-+.++++.|++. |..+..+|++++..+|.+...+..+|+.+|+|+|...-. ..++++.+||.-.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 457999999999999999999875 778999999999999999999999999999999975433 4567888888544
No 277
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.07 E-value=0.29 Score=47.32 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=21.2
Q ss_pred HHHHHHHHHHH----cCC-CEEEEcCCCchHHHHHHH
Q 010563 41 DKQLDAIQAVL----SGR-DCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 41 ~~Q~~~i~~i~----~g~-d~lv~apTG~GKTl~~~l 72 (507)
+.+.+++..+. .+. .+++.||+|+|||.....
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 44555555443 233 578999999999976554
No 278
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.76 Score=48.50 Aligned_cols=54 Identities=26% Similarity=0.156 Sum_probs=31.9
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHh
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l 215 (507)
..++|+||.+-.... -......+..+........++.++++.......++.+.+
T Consensus 428 ~~DLVLIDTaG~s~~----D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 428 DYKLVLIDTAGMGQR----DRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred cCCEEEecCCCcchh----hHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 478999999965321 111122343444433455688888888766666555544
No 279
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.06 E-value=0.16 Score=51.69 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=14.2
Q ss_pred EEEEcCCCchHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~l 72 (507)
+++.||.|+|||.....
T Consensus 41 ~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 41 WLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEecCCCCCHHHHHHH
Confidence 68999999999976544
No 280
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.05 E-value=0.82 Score=44.25 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=65.9
Q ss_pred CCEEEEcCCCchHHHHHHHHHh--c-CCCeEEEecC--h-HHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcC
Q 010563 54 RDCFCLMPTGGGKSMCYQIPAL--A-KPGIVLVVSP--L-IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l--~-~~~~~lvi~P--~-~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (507)
..+.+.+|+|+|||..+..-+. . ....+.++.- . .+.+.|+.......+++.....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~------------------ 137 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR------------------ 137 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecC------------------
Confidence 4678999999999976654322 2 2334444442 2 2444444444433443332111
Q ss_pred CCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChh
Q 010563 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPK 206 (507)
Q Consensus 128 ~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~ 206 (507)
+|+ .+...+.........++++||-+=+... -......+..+.... |...++.++||....
T Consensus 138 ---------~~~-----~l~~~l~~l~~~~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 138 ---------DEA-----AMTRALTYFKEEARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred ---------CHH-----HHHHHHHHHHhcCCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 010 1111222222223479999999966421 123344455544432 344477899998876
Q ss_pred hHHHHHHHhC
Q 010563 207 VQKDVMESLC 216 (507)
Q Consensus 207 ~~~~i~~~l~ 216 (507)
...++.+.+.
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 6666666543
No 281
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.03 E-value=0.18 Score=52.99 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
+.+++.||+|+|||....
T Consensus 149 ~~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348999999999996443
No 282
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.96 E-value=0.12 Score=57.78 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=27.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (507)
+..+++||||+|.|..-+ ...|.++++..|..-+++|..|-...
T Consensus 119 ~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 457899999999997632 35566666665544444444454443
No 283
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.18 Score=54.58 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=27.1
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 208 (507)
+..+++||||+|.++.- .+..|.+..+..|+.-+++|.+|-+..+.
T Consensus 123 g~~KV~IIDEvh~Ls~~------a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNT------AFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCceEEEEEChhhCCHH------HHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 45789999999998752 23444444444444334555556544443
No 284
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.95 E-value=0.13 Score=50.77 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=16.7
Q ss_pred CEEEEcCCCchHHHHHHHHHh
Q 010563 55 DCFCLMPTGGGKSMCYQIPAL 75 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~l 75 (507)
.+++++|+|+|||..+-+.+.
T Consensus 164 SmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred ceEEecCCCCchHHHHHHHHh
Confidence 689999999999976554443
No 285
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.94 E-value=0.1 Score=56.76 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHHHHHHh------c------CCCeEEEecChHHHHHHHHHHHHH---cCCceEEecCCCCHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQIPAL------A------KPGIVLVVSPLIALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKI 120 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~l------~------~~~~~lvi~P~~~L~~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~ 120 (507)
.|+.-.-|-|||..-+...+ . ....+|+|+|+ +++.||..++.+ -+--...+..+
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g--------- 224 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG--------- 224 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc---------
Q ss_pred HHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEe
Q 010563 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200 (507)
Q Consensus 121 ~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lS 200 (507)
.........+++++++|+.++.+..+..-. +-.+|+||||.+..+. .......-.+.....-.+|
T Consensus 225 r~kd~~el~~~dVVltTy~il~~~~l~~i~--------w~Riildea~~ikn~~-------tq~~~a~~~L~a~~RWcLt 289 (674)
T KOG1001|consen 225 RTKDKSELNSYDVVLTTYDILKNSPLVKIK--------WLRIVLDEAHTIKNKD-------TQIFKAVCQLDAKYRWCLT 289 (674)
T ss_pred cccccchhcCCceEEeeHHHhhccccccee--------EEEEEeccccccCCcc-------hHhhhhheeeccceeeeec
Q ss_pred ecCChhhHHHHHHHhCC
Q 010563 201 ATAAPKVQKDVMESLCL 217 (507)
Q Consensus 201 AT~~~~~~~~i~~~l~~ 217 (507)
+|+......++...++.
T Consensus 290 gtPiqn~~~~lysl~~f 306 (674)
T KOG1001|consen 290 GTPIQNNLDELYSLFKF 306 (674)
T ss_pred CChhhhhHHHHHHHHHH
No 286
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.93 E-value=0.02 Score=58.78 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=45.3
Q ss_pred CEEEEcCCCchHHHHHHHHHhcC-CCeEEEecChHHHHHHHHHHHHHcCCceEEecC
Q 010563 55 DCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~l~~-~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (507)
++++.||||+|||.++.+|.+.. .+.+||+-|--++.......++..|-++..++-
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~nP 57 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDP 57 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEcC
Confidence 36899999999999999987764 678888899999988777777777776666653
No 287
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.91 E-value=0.11 Score=50.22 Aligned_cols=144 Identities=20% Similarity=0.188 Sum_probs=72.5
Q ss_pred CEEEEcCCCchHHHHHHHH---HhcC-CCeEEEecC---hHHHHHHHHHHHHHcCCceEEecCCC-CHHHHHHHHHHhhc
Q 010563 55 DCFCLMPTGGGKSMCYQIP---ALAK-PGIVLVVSP---LIALMENQVIGLKEKGIAGEFLSSTQ-TMQVKTKIYEDLDS 126 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp---~l~~-~~~~lvi~P---~~~L~~q~~~~l~~~gi~~~~~~~~~-~~~~~~~~~~~~~~ 126 (507)
=+++.|+||.|||...+-- +... +..+++++. -..++...+..+. +++...+..+. ...+...+......
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s--~v~~~~i~~g~l~~~e~~~~~~~~~~ 98 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLS--GVPYNKIRSGDLSDEEFERLQAAAEK 98 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHH--TSTHHHHHCCGCHHHHHHHHHHHHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhh--cchhhhhhccccCHHHHHHHHHHHHH
Confidence 3677789999999544322 2234 468888874 3445444443332 33332232232 22332322221111
Q ss_pred CCCcccEEE-ECcccccChhhHHHHHhhhcc-CCccEEEEeccccccccC--CCCHHHH----HHHHHHHHhCCCCCEEE
Q 010563 127 GKPSLRLLY-VTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWG--HDFRPSY----RKLSSLRNYLPDVPILA 198 (507)
Q Consensus 127 ~~~~~~il~-~tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g--~~fr~~~----~~l~~l~~~~~~~~~i~ 198 (507)
-. ...+++ -+| .+........+...... ..+++||||=.|.+.... .+-+..+ ..|..+...+ ++|+++
T Consensus 99 l~-~~~l~i~~~~-~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~-~i~vi~ 175 (259)
T PF03796_consen 99 LS-DLPLYIEDTP-SLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL-NIPVIA 175 (259)
T ss_dssp HH-TSEEEEEESS-S-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-TSEEEE
T ss_pred Hh-hCcEEEECCC-CCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-CCeEEE
Confidence 10 122333 333 23333344444444433 678999999999997742 1122222 2344443333 889999
Q ss_pred EeecC
Q 010563 199 LTATA 203 (507)
Q Consensus 199 lSAT~ 203 (507)
+|..-
T Consensus 176 ~sQln 180 (259)
T PF03796_consen 176 LSQLN 180 (259)
T ss_dssp EEEBS
T ss_pred ccccC
Confidence 98854
No 288
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.91 E-value=0.22 Score=54.06 Aligned_cols=46 Identities=28% Similarity=0.379 Sum_probs=27.4
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
.+..+++||||+|.++.- ....|.+..+..|+.-++++..|-+..+
T Consensus 117 ~g~~KV~IIDEah~Ls~~------a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRH------SFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred cCCCEEEEEechHhCCHH------HHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 356789999999998752 2345555555544433444445544443
No 289
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.91 E-value=0.21 Score=54.31 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=25.8
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
++.+++||||+|.++. ..+..|.+.....|..-.++|++|-...+
T Consensus 118 gk~KVIIIDEad~Ls~------~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK------SAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred CCcEEEEEECccccCH------HHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 4578999999998764 22344545555444333444444544433
No 290
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.85 E-value=0.2 Score=54.76 Aligned_cols=76 Identities=26% Similarity=0.251 Sum_probs=63.7
Q ss_pred CccEEEEeccchhHHHHHHHHHhC-C-CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~-g-~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (507)
++.+||.++.+..+.++.+.|++. | ..++.||+++++.+|.+...+..+|+.+|+|.|-.+-. .-+++..+||..+
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEEEEEc
Confidence 457999999999999999999876 4 67899999999999999999999999999999966432 3455677777544
No 291
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.84 E-value=0.17 Score=54.41 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=26.2
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhH
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 208 (507)
.+...++||||+|.+..- ....|.......|..-++.+.+|-+..+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~------a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG------AFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCeEEEEEECcccCCHH------HHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 345789999999998652 23344444444333335555555444433
No 292
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.81 E-value=0.45 Score=47.27 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=24.2
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 010563 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (507)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (507)
.++|||||+|.+.. ......|..+....+..-.+.+|++....
T Consensus 101 ~~vliiDe~d~l~~-----~~~~~~L~~~le~~~~~~~~Ilt~n~~~~ 143 (316)
T PHA02544 101 GKVIIIDEFDRLGL-----ADAQRHLRSFMEAYSKNCSFIITANNKNG 143 (316)
T ss_pred CeEEEEECcccccC-----HHHHHHHHHHHHhcCCCceEEEEcCChhh
Confidence 57899999998732 11224455555555543345555554333
No 293
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.80 E-value=0.25 Score=51.06 Aligned_cols=16 Identities=25% Similarity=0.195 Sum_probs=13.5
Q ss_pred CEEEEcCCCchHHHHH
Q 010563 55 DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv~apTG~GKTl~~ 70 (507)
.+++.||+|+|||...
T Consensus 138 ~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL 153 (405)
T ss_pred eEEEECCCCCcHHHHH
Confidence 4789999999999644
No 294
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.76 E-value=0.22 Score=54.57 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=25.4
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (507)
+...++||||||.+.. .....|.......|..-++.+.+|-+.
T Consensus 117 g~~KV~IIDEa~~LT~------~A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 117 SKYKIYIIDEVHMLSK------SAFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred CCCEEEEEEChhhCCH------HHHHHHHHHhhcCCCceEEEEEcCChh
Confidence 4578999999999864 223445444554444334455445333
No 295
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.75 E-value=0.16 Score=47.66 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
+..+++.||+|+|||....
T Consensus 38 ~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999996543
No 296
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.35 Score=47.86 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~ 92 (507)
+.+++-+|+|+|||+.+=..|-.... +.+=+.--+|++
T Consensus 186 KGVLLYGPPGTGKTLLAkAVA~~T~A-tFIrvvgSElVq 223 (406)
T COG1222 186 KGVLLYGPPGTGKTLLAKAVANQTDA-TFIRVVGSELVQ 223 (406)
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCc-eEEEeccHHHHH
Confidence 67999999999999865333322222 333333445554
No 297
>PRK06904 replicative DNA helicase; Validated
Probab=94.69 E-value=0.74 Score=48.46 Aligned_cols=144 Identities=20% Similarity=0.193 Sum_probs=65.5
Q ss_pred CEEEEcCCCchHHHHHHHH----HhcCCCeEEEecChHHHHHHHHHHHHH--cCCceEEecC--CCCHHHHHHHHHHhhc
Q 010563 55 DCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS--TQTMQVKTKIYEDLDS 126 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp----~l~~~~~~lvi~P~~~L~~q~~~~l~~--~gi~~~~~~~--~~~~~~~~~~~~~~~~ 126 (507)
=+++.|.||.|||...+-- +...+..+++++.--. ..|.+.++-. .+++...+.. ..+..+...+......
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~~ 301 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP-AEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVGM 301 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHHH
Confidence 3567789999999643211 2223556777763322 2333334332 2333322222 2344444333322221
Q ss_pred CCCcccEEEE-CcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCC-CCHH-HHH----HHHHHHHhCCCCCEEE
Q 010563 127 GKPSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SYR----KLSSLRNYLPDVPILA 198 (507)
Q Consensus 127 ~~~~~~il~~-tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~-~~~----~l~~l~~~~~~~~~i~ 198 (507)
-.....+.+. +|. +..........+.... +.+++||||=.+.+..-+. +-|. .+. .|..+...+ ++|+++
T Consensus 302 l~~~~~l~I~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi~ 379 (472)
T PRK06904 302 FKQKPNLYIDDSSG-LTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKEL-KVPVVA 379 (472)
T ss_pred HhcCCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh-CCeEEE
Confidence 1101122221 222 2222233333333322 3589999999998864332 1121 122 233333222 788888
Q ss_pred Eee
Q 010563 199 LTA 201 (507)
Q Consensus 199 lSA 201 (507)
+|-
T Consensus 380 lsQ 382 (472)
T PRK06904 380 LSQ 382 (472)
T ss_pred EEe
Confidence 874
No 298
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.68 E-value=0.22 Score=48.02 Aligned_cols=51 Identities=20% Similarity=0.106 Sum_probs=31.2
Q ss_pred CCCEEEEcCCCchHHH-HHHHHH--hcCCCeEEEec---ChHHHHHHHHHHHHHcCC
Q 010563 53 GRDCFCLMPTGGGKSM-CYQIPA--LAKPGIVLVVS---PLIALMENQVIGLKEKGI 103 (507)
Q Consensus 53 g~d~lv~apTG~GKTl-~~~lp~--l~~~~~~lvi~---P~~~L~~q~~~~l~~~gi 103 (507)
|.-+++.+|+|+|||. |.++.. +.++.++++++ |...+.++......++|.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 4568899999999994 444322 34566888887 333344444444455554
No 299
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.65 E-value=0.12 Score=54.58 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=68.2
Q ss_pred HHHHHHHcC-----CCEEEEcCCCchHHHHHH-H--HHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 010563 45 DAIQAVLSG-----RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (507)
Q Consensus 45 ~~i~~i~~g-----~d~lv~apTG~GKTl~~~-l--p~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (507)
..++.++.| .-+++.+|+|+|||...+ + -.+.++.++++++ .-+-..|...++.++|+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~~~---------- 318 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGIDFE---------- 318 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCChH----------
Confidence 446666644 568999999999995432 2 2334566788877 34445677777888775321
Q ss_pred HHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
.....+ ...++...|+...-..+...+.+.....+.++||||=..-+.
T Consensus 319 -----~~~~~g--~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 319 -----EMEQQG--LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred -----HHhhCC--cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 111222 255555566655545566666666555568899999887653
No 300
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.65 E-value=0.33 Score=50.75 Aligned_cols=57 Identities=28% Similarity=0.229 Sum_probs=34.5
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHH-HHHHHh--cCCCeEEEecChHHHHHHHHHHHHHcCC
Q 010563 46 AIQAVLSG-----RDCFCLMPTGGGKSMC-YQIPAL--AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (507)
Q Consensus 46 ~i~~i~~g-----~d~lv~apTG~GKTl~-~~lp~l--~~~~~~lvi~P~~~L~~q~~~~l~~~gi 103 (507)
-++.++.| .-+++.+++|+|||.. .++..- ..+.++++++-.- -..|...+..++|.
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee-s~~qi~~ra~rlg~ 132 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE-SASQIKLRAERLGL 132 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc-cHHHHHHHHHHcCC
Confidence 35566653 4578999999999953 333322 2466788887543 33455555555554
No 301
>PRK08760 replicative DNA helicase; Provisional
Probab=94.61 E-value=0.14 Score=53.93 Aligned_cols=144 Identities=19% Similarity=0.156 Sum_probs=69.4
Q ss_pred CEEEEcCCCchHHHHHHHHH----hcCCCeEEEecChHHHHHHHHHHHHHc--CCceEEecC-CCCHHHHHHHHHHhhcC
Q 010563 55 DCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFLSS-TQTMQVKTKIYEDLDSG 127 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~----l~~~~~~lvi~P~~~L~~q~~~~l~~~--gi~~~~~~~-~~~~~~~~~~~~~~~~~ 127 (507)
=+++.|+||.|||...+--+ ...+..+++++.--. ..|.+.++... ++....+.. ..+..+...+......-
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs-~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l 309 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMS-ASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKML 309 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCC-HHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 36778899999995443222 223456777764322 23444555442 233222222 22333333222222111
Q ss_pred CCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCH-----HHHHHHHHHHHhCCCCCEEEEee
Q 010563 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFR-----PSYRKLSSLRNYLPDVPILALTA 201 (507)
Q Consensus 128 ~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr-----~~~~~l~~l~~~~~~~~~i~lSA 201 (507)
. ...+.+....-+.-......+.+......+++||||=.+.+..-+. +-| ...+.|..+...+ ++|++++|-
T Consensus 310 ~-~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel-~ipVi~lsQ 387 (476)
T PRK08760 310 K-ETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL-NVPVIALSQ 387 (476)
T ss_pred h-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh-CCEEEEeec
Confidence 1 1344443332333333444444444445689999999998864332 112 1123333333333 788888874
No 302
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.23 Score=52.97 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=24.8
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (507)
.+...++||||+|.+..- ....|....+..|+.-++++..|-
T Consensus 117 ~g~~kViIIDEa~~ls~~------a~naLLK~LEepp~~v~fIL~Ttd 158 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ------SFNALLKTLEEPPEYVKFILATTD 158 (546)
T ss_pred cCCcEEEEEechhhccHH------HHHHHHHHHhcCCCCceEEEEECC
Confidence 345689999999998652 224455555555543334443443
No 303
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.56 E-value=0.27 Score=52.91 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=29.6
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i 211 (507)
+..+++||||+|.++.- .+..|.......|..-+++|..|-...+...|
T Consensus 117 ~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred CCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 45789999999998752 34555555555554444444446554444433
No 304
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.50 E-value=1.3 Score=49.38 Aligned_cols=54 Identities=17% Similarity=0.117 Sum_probs=40.1
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHH--HHhc-CCCeEEEecChHHHH
Q 010563 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQI--PALA-KPGIVLVVSPLIALM 91 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g-~d~lv~apTG~GKTl~~~l--p~l~-~~~~~lvi~P~~~L~ 91 (507)
.|++.|.+|+..++.+ +-+++.+++|+|||...-. -++. .+..++++.||-.-+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAA 409 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHH
Confidence 4889999999999875 4578999999999954322 2222 356788889996544
No 305
>PRK05748 replicative DNA helicase; Provisional
Probab=94.46 E-value=0.21 Score=52.32 Aligned_cols=147 Identities=19% Similarity=0.147 Sum_probs=66.4
Q ss_pred CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEecChHHHHHHHHHHHH-H-cCCceEEec-CCCCHHHHHHHHHHhhc
Q 010563 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLK-E-KGIAGEFLS-STQTMQVKTKIYEDLDS 126 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~-lp---~l~~~~~~lvi~P~~~L~~q~~~~l~-~-~gi~~~~~~-~~~~~~~~~~~~~~~~~ 126 (507)
.-+++.|+||.|||.-.+ +. +...+..+++++.- .-..|.+.++- . -++....+. ......+...+......
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~~ 282 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGS 282 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHH
Confidence 346788899999995433 21 12234566666522 22233334432 2 123222121 12222332222222211
Q ss_pred CCCcccEEEECcccccChhhHHHHHhhhccC-CccEEEEeccccccccCC--CCHH-HH----HHHHHHHHhCCCCCEEE
Q 010563 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCISSWGH--DFRP-SY----RKLSSLRNYLPDVPILA 198 (507)
Q Consensus 127 ~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~-~l~~iViDEaH~i~~~g~--~fr~-~~----~~l~~l~~~~~~~~~i~ 198 (507)
.. +..+.+.-+.-+........+.+..... .+++||||=.|.+..-+. +-|. .+ +.|..+...+ ++|+++
T Consensus 283 l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~-~i~vi~ 360 (448)
T PRK05748 283 LS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKEL-KVPVIA 360 (448)
T ss_pred Hh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHh-CCeEEE
Confidence 11 1233332221222233444444443333 689999999999854322 1121 11 1222222222 788888
Q ss_pred EeecC
Q 010563 199 LTATA 203 (507)
Q Consensus 199 lSAT~ 203 (507)
+|-.-
T Consensus 361 lsQln 365 (448)
T PRK05748 361 LSQLS 365 (448)
T ss_pred ecccC
Confidence 87753
No 306
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.45 E-value=2.3 Score=40.14 Aligned_cols=102 Identities=16% Similarity=0.062 Sum_probs=54.9
Q ss_pred CCCEEEEcCCCchHHHH-HHHH--HhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCC
Q 010563 53 GRDCFCLMPTGGGKSMC-YQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~-~~lp--~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (507)
|.-+++.+++|+|||.. .++. .+.++.++++++--. -..+.++++.++|+...- .+..+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~-~~~~~~~~~~~~g~~~~~---------------~~~~g~- 87 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN-TSKSYLKQMESVKIDISD---------------FFLWGY- 87 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC-CHHHHHHHHHHCCCChhH---------------HHhCCC-
Confidence 45678899999999943 3332 244566777776433 335666677777754211 011111
Q ss_pred cccEEEECcccccC-----hhhHHHHHhhhccCCccEEEEeccccccc
Q 010563 130 SLRLLYVTPELTAT-----PGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (507)
Q Consensus 130 ~~~il~~tpe~~~t-----~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (507)
..++-..++.+.. ...+..+.........+++||||.--+..
T Consensus 88 -l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 88 -LRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred -ceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 2222222222211 22334444444434578999999986543
No 307
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.44 E-value=0.15 Score=50.36 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.2
Q ss_pred CCCEEEEcCCCchHHHH
Q 010563 53 GRDCFCLMPTGGGKSMC 69 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~ 69 (507)
++.+++.||+|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35799999999999943
No 308
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.42 E-value=0.032 Score=58.87 Aligned_cols=56 Identities=30% Similarity=0.471 Sum_probs=46.3
Q ss_pred CEEEEcCCCchHHHHHHHHHhcC-CCeEEEecChHHHHHHHHHHHHHcCCceEEecC
Q 010563 55 DCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~l~~-~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (507)
+++++||||+|||..+.+|.+.. .+.+||.-|--+|.......+++.|-++..++-
T Consensus 46 h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vldp 102 (469)
T PF02534_consen 46 HVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLDP 102 (469)
T ss_pred EEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEeec
Confidence 58999999999999999998764 557888889999998888888887766666553
No 309
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.41 E-value=0.27 Score=51.16 Aligned_cols=146 Identities=21% Similarity=0.187 Sum_probs=67.2
Q ss_pred CCCEEEEcCCCchHHHHHHHHH----hcCCCeEEEec---ChHHHHHHHHHHHHHcCCceEEecC-CCCHHHHHHHHHHh
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSS-TQTMQVKTKIYEDL 124 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~----l~~~~~~lvi~---P~~~L~~q~~~~l~~~gi~~~~~~~-~~~~~~~~~~~~~~ 124 (507)
|.=+++.|+||+|||...+--+ +..+..+++++ |...|+...... ..|++...+.. .....+...+....
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~--~~~v~~~~~~~~~l~~~~~~~~~~~~ 271 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLAS--KSGINTGNIRTGRFNDSDFNRLLNAV 271 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHH--HcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 3446788899999995433222 23456777777 444443332221 13443332222 22222222222221
Q ss_pred hcCCCcccEEEECcccccChhhHHHHHhhhcc-CCccEEEEeccccccc-cCCCCHHHH----HHHHHHHHhCCCCCEEE
Q 010563 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISS-WGHDFRPSY----RKLSSLRNYLPDVPILA 198 (507)
Q Consensus 125 ~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~-~g~~fr~~~----~~l~~l~~~~~~~~~i~ 198 (507)
..-. ...+.+..+..+........+.+.... +.+++||||=.|.+.. -+.+-...+ +.|..+...+ ++|+++
T Consensus 272 ~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~-~i~Vi~ 349 (421)
T TIGR03600 272 DRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKEL-DVPVVL 349 (421)
T ss_pred HHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHh-CCcEEE
Confidence 1110 123333322223223333333333322 3589999999998864 222211111 2233332222 788888
Q ss_pred Eeec
Q 010563 199 LTAT 202 (507)
Q Consensus 199 lSAT 202 (507)
+|-.
T Consensus 350 lsQl 353 (421)
T TIGR03600 350 LAQL 353 (421)
T ss_pred eccc
Confidence 8764
No 310
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.38 E-value=0.2 Score=47.15 Aligned_cols=130 Identities=25% Similarity=0.260 Sum_probs=67.0
Q ss_pred CCCEEEEcCCCchHHHH-HHH--HHhcC-CCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCC
Q 010563 53 GRDCFCLMPTGGGKSMC-YQI--PALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~-~~l--p~l~~-~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (507)
|..+++.+|+|+|||.- .++ ..+.+ +..+++++- .+-.++..+.++++|.... .....+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~---------------~~~~~g- 81 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGWDLE---------------EYEDSG- 81 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS-HH---------------HHHHTT-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCCcHH---------------HHhhcC-
Confidence 45689999999999943 333 34556 677887773 3334666677777765221 111122
Q ss_pred CcccEEEECccccc----C-hhhHHHHHhhhccCCccEEEEeccccccccC--CCCHHHHHHHHHHHHhCCCCCEEEEee
Q 010563 129 PSLRLLYVTPELTA----T-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--HDFRPSYRKLSSLRNYLPDVPILALTA 201 (507)
Q Consensus 129 ~~~~il~~tpe~~~----t-~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g--~~fr~~~~~l~~l~~~~~~~~~i~lSA 201 (507)
...++-..++... . ..+...+.+.....+.+++|||-..-+.... ..+|..+..+....+.. +. .+++|+
T Consensus 82 -~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~-~~-t~llt~ 158 (226)
T PF06745_consen 82 -KLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR-GV-TTLLTS 158 (226)
T ss_dssp -SEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT-TE-EEEEEE
T ss_pred -CEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC-CC-EEEEEE
Confidence 1334434444331 1 2234444444333345899999998882222 12444444444444433 33 344444
Q ss_pred c
Q 010563 202 T 202 (507)
Q Consensus 202 T 202 (507)
.
T Consensus 159 ~ 159 (226)
T PF06745_consen 159 E 159 (226)
T ss_dssp E
T ss_pred c
Confidence 4
No 311
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.38 E-value=0.1 Score=57.12 Aligned_cols=74 Identities=22% Similarity=0.220 Sum_probs=64.0
Q ss_pred CccEEEEeccchhHHHHHHHHHh----CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc-cccccCCCccEEE
Q 010563 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVC 331 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~~GiD~p~v~~VI 331 (507)
+.+++|.++|+.-+.++++.+++ .|+++..+||+++..+|..+++...+|+.+|+|+|.+. ...+++.++.+||
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 45799999999999988887765 37899999999999999999999999999999999874 4457777888887
No 312
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.37 E-value=0.31 Score=53.05 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
+.+|+.||.|+|||.....
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4579999999999976544
No 313
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.32 E-value=1.8 Score=42.98 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=30.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHH-------hCCCCCEEEEeecCChhhHHHHHHH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-------YLPDVPILALTATAAPKVQKDVMES 214 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-------~~~~~~~i~lSAT~~~~~~~~i~~~ 214 (507)
...++|+||=+-+... -......|..+.. ..|.-.++.++||............
T Consensus 195 ~~~D~ViIDTaGr~~~----~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHN----KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcC----CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 3478999998877542 1112233333332 2244457899999777655544443
No 314
>PRK05595 replicative DNA helicase; Provisional
Probab=94.31 E-value=0.18 Score=52.74 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=73.1
Q ss_pred HHHHHHHcC----CCEEEEcCCCchHHHHHH-HH---HhcCCCeEEEecChHHHHHHHHHHHHH--cCCceEEecCC-CC
Q 010563 45 DAIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSST-QT 113 (507)
Q Consensus 45 ~~i~~i~~g----~d~lv~apTG~GKTl~~~-lp---~l~~~~~~lvi~P~~~L~~q~~~~l~~--~gi~~~~~~~~-~~ 113 (507)
..++.+..| .=+++.|.||.|||...+ +. +...+..+++++.-- -..|.+.++-. .+++...+..+ ..
T Consensus 189 ~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm-s~~~l~~R~~a~~~~v~~~~~~~~~l~ 267 (444)
T PRK05595 189 RELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM-SKEQLAYKLLCSEANVDMLRLRTGNLE 267 (444)
T ss_pred HHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC-CHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 344555443 335678899999995433 22 223456677776432 12333333322 23433322222 23
Q ss_pred HHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCHH-HH----HHHHHH
Q 010563 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRP-SY----RKLSSL 187 (507)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~-~~----~~l~~l 187 (507)
..+...+......-. ...+.+--+.-+.-......+.+......+++||||=.|.+..-+. +-|. .+ +.|..+
T Consensus 268 ~~e~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~l 346 (444)
T PRK05595 268 DKDWENIARASGPLA-AAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKAL 346 (444)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHH
Confidence 333333332221111 1233332222222233444444444445599999999999964321 2221 12 223333
Q ss_pred HHhCCCCCEEEEeec
Q 010563 188 RNYLPDVPILALTAT 202 (507)
Q Consensus 188 ~~~~~~~~~i~lSAT 202 (507)
...+ ++|++++|-.
T Consensus 347 Ake~-~i~vi~lsQL 360 (444)
T PRK05595 347 AKEM-ECPVIALSQL 360 (444)
T ss_pred HHHh-CCeEEEeecc
Confidence 3332 7889888754
No 315
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.31 E-value=0.56 Score=44.38 Aligned_cols=51 Identities=18% Similarity=0.101 Sum_probs=32.5
Q ss_pred cCCCEEEEcCCCchHHHH-HHHH--HhcCCCeEEEecChHHHHHHHHHHHHHcCC
Q 010563 52 SGRDCFCLMPTGGGKSMC-YQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~-~~lp--~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi 103 (507)
.|.-+++.+|+|+|||.. .++. .+.++..+++++... -..+..+.+.++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~-~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL-TTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHhCC
Confidence 466789999999999965 3332 234556778887433 23455555666654
No 316
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.25 E-value=0.94 Score=49.65 Aligned_cols=149 Identities=18% Similarity=0.196 Sum_probs=80.6
Q ss_pred CChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHHH---HhcC--CCeEEEecChHHHHH
Q 010563 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIP---ALAK--PGIVLVVSPLIALME 92 (507)
Q Consensus 20 ~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~--d~lv~apTG~GKTl~~~lp---~l~~--~~~~lvi~P~~~L~~ 92 (507)
.+.+......+.+ ...+....-|.+.+..++.++ -+++.|.-|=|||.+.=+. +... ...++|.+|+.+=++
T Consensus 197 ~~~~~~~~~~l~~-l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~ 275 (758)
T COG1444 197 PPLDPVFPRELYE-LCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQ 275 (758)
T ss_pred CCCCCCCCHHHhh-hhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHH
Confidence 3333434444554 244444445555556666553 4788899999999654322 2222 348999999988655
Q ss_pred HHHHH----HHHcCCceEEecCCCCHHHHHHHHHHhhc-CCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecc
Q 010563 93 NQVIG----LKEKGIAGEFLSSTQTMQVKTKIYEDLDS-GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 167 (507)
Q Consensus 93 q~~~~----l~~~gi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEa 167 (507)
...+. |..+|.+-.+..... ..+.. .....+|-|.+|.... . . -+++|||||
T Consensus 276 ~Lf~fa~~~l~~lg~~~~v~~d~~---------g~~~~~~~~~~~i~y~~P~~a~-~------------~-~DllvVDEA 332 (758)
T COG1444 276 TLFEFAGKGLEFLGYKRKVAPDAL---------GEIREVSGDGFRIEYVPPDDAQ-E------------E-ADLLVVDEA 332 (758)
T ss_pred HHHHHHHHhHHHhCCccccccccc---------cceeeecCCceeEEeeCcchhc-c------------c-CCEEEEehh
Confidence 44433 333443322111110 00100 1122456677776443 1 1 579999999
Q ss_pred ccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 010563 168 HCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (507)
Q Consensus 168 H~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (507)
=-|.- .-|..+... -+.++||.|..
T Consensus 333 AaIpl---------plL~~l~~~---~~rv~~sTTIh 357 (758)
T COG1444 333 AAIPL---------PLLHKLLRR---FPRVLFSTTIH 357 (758)
T ss_pred hcCCh---------HHHHHHHhh---cCceEEEeeec
Confidence 87642 334444433 35788999864
No 317
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.22 E-value=0.29 Score=51.71 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEcCCCchHHHHHHHHHh----c---CCCeEEEecChHHHHHHHHHHHHHc
Q 010563 41 DKQLDAIQAVLS-----G----RDCFCLMPTGGGKSMCYQIPAL----A---KPGIVLVVSPLIALMENQVIGLKEK 101 (507)
Q Consensus 41 ~~Q~~~i~~i~~-----g----~d~lv~apTG~GKTl~~~lp~l----~---~~~~~lvi~P~~~L~~q~~~~l~~~ 101 (507)
|+|+-++..++. | +.+++..|=|.|||......++ . .+..++++++++.-+....+.++..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 678877777662 2 3588999999999954332221 1 2457899999999888887777664
No 318
>PHA02533 17 large terminase protein; Provisional
Probab=94.21 E-value=1.4 Score=47.09 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH----h-cCCCeEEEecChHHHHHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----L-AKPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~----l-~~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
.|+|+|...+..+..++-.++..+=..|||.+....+ + ..+..+++++|+..-+....+.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4778999999988766666788899999996654322 2 3456899999998887776666654
No 319
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.19 E-value=0.05 Score=61.36 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=88.6
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhc---------------------CCCeEEEecChHHHHHHHHHHHHHc---CCceEEe
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPALA---------------------KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFL 108 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~l~---------------------~~~~~lvi~P~~~L~~q~~~~l~~~---gi~~~~~ 108 (507)
|+++++.--.|.|||.+-+...+. ..|.||||+|. ++..||..+...- ++++...
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 567788889999999776543331 25679999998 5557888887662 3333222
Q ss_pred cCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHH---------HHHhhhc--cCC-----ccEEEEeccccccc
Q 010563 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS---------KLKKIHS--RGL-----LNLVAIDEAHCISS 172 (507)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~---------~l~~~~~--~~~-----l~~iViDEaH~i~~ 172 (507)
-+-... ....- ..+ .+++|+++|..++.+.-... ++.+.+. ... +=.|++|||+.+-.
T Consensus 453 ~Girk~-~~~~~-~el----~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 453 FGIRKT-FWLSP-FEL----LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred echhhh-cccCc-hhh----hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Confidence 111100 00000 111 24899999998776543221 1111110 000 22489999998754
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHh
Q 010563 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (507)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l 215 (507)
- -.....+..++|.+-.-++|+||-.. ..++.-.+
T Consensus 527 s-------sS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll 561 (1394)
T KOG0298|consen 527 S-------SSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLL 561 (1394)
T ss_pred h-------HHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHH
Confidence 2 25666777777888899999999887 55554444
No 320
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.15 E-value=0.52 Score=49.34 Aligned_cols=43 Identities=16% Similarity=0.012 Sum_probs=24.3
Q ss_pred CEEEEcCCCchHHHHHHHH-H-hc--C-CCeEEEecChHHHHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIP-A-LA--K-PGIVLVVSPLIALMENQVIGL 98 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp-~-l~--~-~~~~lvi~P~~~L~~q~~~~l 98 (507)
.+++.|++|+|||...... . +. . +..++++ +...+..+....+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv-~~~~f~~~~~~~l 190 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM-SGDEFARKAVDIL 190 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHH
Confidence 4889999999999433221 1 11 2 3344444 4456665544444
No 321
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.13 E-value=1.8 Score=44.96 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=28.5
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhhHHH
Q 010563 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKD 210 (507)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~ 210 (507)
.++||||.+-+... -......|..+... .|+..++.+.||......+.
T Consensus 176 ~DvVIIDTAGr~~~----d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~ 224 (437)
T PRK00771 176 ADVIIVDTAGRHAL----EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQ 224 (437)
T ss_pred CCEEEEECCCcccc----hHHHHHHHHHHHHHhcccceeEEEeccccHHHHHH
Confidence 38899999965432 12223444444443 35666788888887655443
No 322
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.10 E-value=0.6 Score=50.54 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=25.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (507)
+..+++||||+|.++. .....|....+..|..-+++|.+|-...
T Consensus 131 a~~KVvIIDEad~Ls~------~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 131 ARYKVYIIDEVHMLST------AAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred CCcEEEEEEChHhCCH------HHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 4468999999999875 2234555555554443344444454333
No 323
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.09 E-value=0.075 Score=50.55 Aligned_cols=51 Identities=18% Similarity=0.051 Sum_probs=34.5
Q ss_pred CCCEEEEcCCCchHHH-HHHH--HHhcCCCeEEEecChHHHHHHHHHHHHHcCCc
Q 010563 53 GRDCFCLMPTGGGKSM-CYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (507)
Q Consensus 53 g~d~lv~apTG~GKTl-~~~l--p~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~ 104 (507)
|.-+++.+|+|+|||. +.++ -.+.++..+++++ +-+-..+..+++.++|..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhCCC
Confidence 4578999999999996 3333 3345666788887 334555666667776653
No 324
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.57 Score=49.49 Aligned_cols=41 Identities=27% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (507)
+...++||||||.+.. .....|.......|...++++.+|-
T Consensus 118 ~~~KVvIIDEad~Lt~------~a~naLLk~LEepp~~~v~Il~tt~ 158 (486)
T PRK14953 118 GKYKVYIIDEAHMLTK------EAFNALLKTLEEPPPRTIFILCTTE 158 (486)
T ss_pred CCeeEEEEEChhhcCH------HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 4467999999998754 2234444444444444455554443
No 325
>PRK08840 replicative DNA helicase; Provisional
Probab=94.03 E-value=0.67 Score=48.66 Aligned_cols=145 Identities=14% Similarity=0.144 Sum_probs=65.2
Q ss_pred CCEEEEcCCCchHHHHHHH----HHhcCCCeEEEecChHHHHHHHHHHHHH--cCCceEEecC-CCCHHHHHHHHHHhhc
Q 010563 54 RDCFCLMPTGGGKSMCYQI----PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS-TQTMQVKTKIYEDLDS 126 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l----p~l~~~~~~lvi~P~~~L~~q~~~~l~~--~gi~~~~~~~-~~~~~~~~~~~~~~~~ 126 (507)
.=+++.|.||.|||.-.+- .+...+..+++++.--. ..|.+.++-. .++....+.. ..+..+...+......
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 296 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP-AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGI 296 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3456778999999964421 12234556777763322 2333334332 2333222222 2333444333222111
Q ss_pred CCCcccEEEE-CcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCCC-CHH-HHH----HHHHHHHhCCCCCEEE
Q 010563 127 GKPSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHD-FRP-SYR----KLSSLRNYLPDVPILA 198 (507)
Q Consensus 127 ~~~~~~il~~-tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~~-fr~-~~~----~l~~l~~~~~~~~~i~ 198 (507)
-.....+.+- +|. +.-........+.... +.+++||||=.|.+..-+.. -|. .+. .|..+...+ ++|+++
T Consensus 297 l~~~~~l~I~d~~~-~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi~ 374 (464)
T PRK08840 297 LMEKKNMYIDDSSG-LTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKEL-NVPVVA 374 (464)
T ss_pred HHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHh-CCeEEE
Confidence 1001222221 221 2112233333333222 35899999999998643421 121 122 222233222 788888
Q ss_pred Eee
Q 010563 199 LTA 201 (507)
Q Consensus 199 lSA 201 (507)
+|-
T Consensus 375 LsQ 377 (464)
T PRK08840 375 LSQ 377 (464)
T ss_pred EEe
Confidence 874
No 326
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.00 E-value=0.049 Score=58.67 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=49.6
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEecChHHHHHHHHHHHHHcCCceEEecCC
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~-~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~ 111 (507)
+.+++.||||+|||..+.+|.+.. ++.+||+=|--++........++.|-++..++-.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfdP~ 217 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPA 217 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 468999999999999999998765 6788999999999999998888888877776643
No 327
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.96 E-value=0.52 Score=48.55 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=25.8
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
+...++||||+|.+... ....|.......|...++.+.++-...+
T Consensus 126 ~~~kvvIIdea~~l~~~------~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIA------AFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred CCeEEEEEeChhhCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 44689999999998642 2234444444444444555555543333
No 328
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.94 E-value=0.26 Score=50.53 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=30.8
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHH
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 212 (507)
.+...+++|||+|.+..-. -..|-+..+..|...++++++|-+..+...|.
T Consensus 115 ~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred cCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECChHHChHHHH
Confidence 3557899999999986521 13344444554555566777766555444433
No 329
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.94 E-value=0.64 Score=46.54 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.0
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~l 72 (507)
.+++.+|+|+|||.....
T Consensus 38 ~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999966543
No 330
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.93 E-value=0.074 Score=56.43 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=33.3
Q ss_pred hcCCC-CCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHh
Q 010563 33 HFGHA-QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL 75 (507)
Q Consensus 33 ~fg~~-~~r~~Q~~~i~~i~----~g~d~lv~apTG~GKTl~~~lp~l 75 (507)
.|+|. +|+.+|.+-+..+. +|+-.|+..|||+|||+..+-.++
T Consensus 9 ~F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 9 EFPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred ccCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 35554 58899999887765 688889999999999987665554
No 331
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.89 E-value=0.57 Score=47.00 Aligned_cols=33 Identities=18% Similarity=0.030 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHHc--C---CCEEEEcCCCchHHHHHH
Q 010563 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~--g---~d~lv~apTG~GKTl~~~ 71 (507)
++|||...++.+.. + +-.++.+|.|.||+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 46888888877764 3 357899999999996543
No 332
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.87 E-value=0.46 Score=51.05 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=24.0
Q ss_pred CEEEEcCCCchHHHHHHHHH--hc--CCCeEEEecChHHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIPA--LA--KPGIVLVVSPLIALMENQVI 96 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~--l~--~~~~~lvi~P~~~L~~q~~~ 96 (507)
.+++.+++|+|||......+ +. ..+..++.++...++.+.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~ 361 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFIN 361 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH
Confidence 38899999999995332211 11 12444455555566655443
No 333
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.83 E-value=0.3 Score=48.58 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=31.5
Q ss_pred ccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHH
Q 010563 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (507)
Q Consensus 155 ~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 212 (507)
..+..+++|||+||.|..-. -..|-+..+.-|.--+++|+++-+..+...|.
T Consensus 104 ~~g~~KV~iI~~a~~m~~~A------aNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTEAA------ANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ccCCceEEEEechhhhCHHH------HHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 34668899999999987522 23444444444444466666665555544443
No 334
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.82 E-value=0.36 Score=51.57 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=15.0
Q ss_pred CEEEEcCCCchHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp 73 (507)
-.++.||.|+|||.+..+-
T Consensus 40 a~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3589999999999766543
No 335
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.82 E-value=1.5 Score=45.29 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=32.5
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhC
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~ 216 (507)
..++++||.+-. .+.-......+..+.... +...++.++||.......++...+.
T Consensus 269 ~~d~VLIDTaGr----sqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 269 GKHMVLIDTVGM----SQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred CCCEEEecCCCC----CcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 357888998622 111122234455544322 3345788999998888787776654
No 336
>PRK09165 replicative DNA helicase; Provisional
Probab=93.80 E-value=0.3 Score=51.83 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=68.3
Q ss_pred CEEEEcCCCchHHHHHHHHH----hc--------------CCCeEEEecChHHHHHHHHHHHHH--cCCceEEecC-CCC
Q 010563 55 DCFCLMPTGGGKSMCYQIPA----LA--------------KPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS-TQT 113 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~----l~--------------~~~~~lvi~P~~~L~~q~~~~l~~--~gi~~~~~~~-~~~ 113 (507)
=+++.|+||.|||...+--+ .. .+..+++++.--. ..|.+.++.. .|++...+.. ..+
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs-~~ql~~R~la~~s~v~~~~i~~~~l~ 297 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS-AEQLATRILSEQSEISSSKIRRGKIS 297 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC-HHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 36778899999995433211 11 1346677753322 2344444433 2444332222 233
Q ss_pred HHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC---CCHH-HH----HHHH
Q 010563 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH---DFRP-SY----RKLS 185 (507)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~---~fr~-~~----~~l~ 185 (507)
..+...+........ ...+.+-..--+.-......+.+......+++||||=.|.+..-+. +-|. .+ +.|.
T Consensus 298 ~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK 376 (497)
T PRK09165 298 EEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLK 376 (497)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHH
Confidence 333333333222111 1234333221222223334444444445689999999998864331 2221 12 2333
Q ss_pred HHHHhCCCCCEEEEee
Q 010563 186 SLRNYLPDVPILALTA 201 (507)
Q Consensus 186 ~l~~~~~~~~~i~lSA 201 (507)
.+...+ ++|++++|-
T Consensus 377 ~lAkel-~ipVi~lsQ 391 (497)
T PRK09165 377 ALAKEL-NIPVIALSQ 391 (497)
T ss_pred HHHHHh-CCeEEEeec
Confidence 333322 788888876
No 337
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.79 E-value=0.78 Score=47.89 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=14.2
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
.+++.||+|+|||....
T Consensus 132 ~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred eEEEEcCCCCcHHHHHH
Confidence 58999999999996543
No 338
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.78 E-value=0.61 Score=50.07 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=27.2
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
..+++||||||.+.. .....|.......|...++.+.+|-...+
T Consensus 119 ~~KVIIIDEad~Lt~------~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 119 KYKVYIIDEAHMLST------SAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred CcEEEEEechHhCCH------HHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 357899999999864 23345555556555555555555544443
No 339
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.72 E-value=0.73 Score=47.33 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~ 74 (507)
.+.+++.+|+|+|||+..-.-+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA 200 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVA 200 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4679999999999997654433
No 340
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.71 E-value=2.2 Score=44.09 Aligned_cols=120 Identities=10% Similarity=0.101 Sum_probs=60.9
Q ss_pred EEEEcCCCchHHHHHH-HHH-hcC-CCeEEEec--ChHHHHHHHHHHHHH-cCCceEEecCCCCH-HHHHHHHHHhhcCC
Q 010563 56 CFCLMPTGGGKSMCYQ-IPA-LAK-PGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTM-QVKTKIYEDLDSGK 128 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~-lp~-l~~-~~~~lvi~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~-~~~~~~~~~~~~~~ 128 (507)
+.+++++|+|||.+.. +.. +.. +.++++++ |.+.-+.+|.+.+.. .+++.......... .....
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~--------- 173 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASE--------- 173 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHH---------
Confidence 6789999999995543 332 223 33555554 456666666655443 44444322221111 10000
Q ss_pred CcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhh
Q 010563 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKV 207 (507)
Q Consensus 129 ~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~ 207 (507)
.+.... ....++|+||=+-+... -......+..+.... |...++.++||.....
T Consensus 174 --------------------~l~~~~-~~~~DvViIDTaGr~~~----d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a 228 (429)
T TIGR01425 174 --------------------GVEKFK-KENFDIIIVDTSGRHKQ----EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA 228 (429)
T ss_pred --------------------HHHHHH-hCCCCEEEEECCCCCcc----hHHHHHHHHHHhhhcCCcEEEEEeccccChhH
Confidence 111111 12367888888865322 223344555554433 4555777888876554
Q ss_pred HH
Q 010563 208 QK 209 (507)
Q Consensus 208 ~~ 209 (507)
..
T Consensus 229 ~~ 230 (429)
T TIGR01425 229 EA 230 (429)
T ss_pred HH
Confidence 33
No 341
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.62 E-value=0.59 Score=41.55 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=32.9
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 212 (507)
+..+++||||||.+.. .+...|.+..+..|..-+++|+++-...+...|.
T Consensus 101 ~~~KviiI~~ad~l~~------~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE------EAQNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp SSSEEEEEETGGGS-H------HHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred CCceEEEeehHhhhhH------HHHHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 4578999999999865 2335666777777766667777776666655544
No 342
>CHL00176 ftsH cell division protein; Validated
Probab=93.59 E-value=1.1 Score=48.95 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=16.0
Q ss_pred CCEEEEcCCCchHHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp 73 (507)
+.+++.+|+|+|||+....-
T Consensus 217 ~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46999999999999765433
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.57 E-value=3.5 Score=40.01 Aligned_cols=50 Identities=22% Similarity=0.171 Sum_probs=28.4
Q ss_pred CEEEEcCCCchHHHHHHHHH--hc-CCCeEEEec--ChHHHHHHHHHHH-HHcCCc
Q 010563 55 DCFCLMPTGGGKSMCYQIPA--LA-KPGIVLVVS--PLIALMENQVIGL-KEKGIA 104 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~--l~-~~~~~lvi~--P~~~L~~q~~~~l-~~~gi~ 104 (507)
-+.+.+|+|+|||.+..-.+ +. .+.+++++. +.+.-..+|...+ +..|++
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~ 129 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD 129 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE
Confidence 46778999999996544222 22 344666665 4455445555443 334543
No 344
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.55 E-value=0.79 Score=51.27 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=21.0
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEEEec
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~ 85 (507)
+.+++.+|+|+|||+..-.-+-..+...+.+.
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v~ 519 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVR 519 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 46899999999999765544433333334443
No 345
>PRK08006 replicative DNA helicase; Provisional
Probab=93.48 E-value=0.93 Score=47.70 Aligned_cols=143 Identities=19% Similarity=0.165 Sum_probs=65.2
Q ss_pred CEEEEcCCCchHHHHHHHH----HhcCCCeEEEec---ChHHHHHHHHHHHHHcCCceEEec-CCCCHHHHHHHHHHhhc
Q 010563 55 DCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQTMQVKTKIYEDLDS 126 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp----~l~~~~~~lvi~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~~~~~~~~~~~~~~~ 126 (507)
=+++.|.||.|||.-.+-- +...+..+++++ |...|+....... .++....+. +..+..+...+......
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~e~~~~~~a~~~ 303 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASL--SRVDQTRIRTGQLDDEDWARISGTMGI 303 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHHHHHHHHHHHH
Confidence 3566779999999543321 223345677776 3334443332222 233332222 22334444333322211
Q ss_pred CCCcccEEEECcc-cccChhhHHHHHhhhcc-CCccEEEEeccccccccCC-CCHH-HH----HHHHHHHHhCCCCCEEE
Q 010563 127 GKPSLRLLYVTPE-LTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SY----RKLSSLRNYLPDVPILA 198 (507)
Q Consensus 127 ~~~~~~il~~tpe-~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~-~fr~-~~----~~l~~l~~~~~~~~~i~ 198 (507)
-.....+.+ .+. -+..........+.... +.+++||||=.|.+..-+. +-|. .+ +.|..+...+ ++|+++
T Consensus 304 ~~~~~~l~I-~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi~ 381 (471)
T PRK08006 304 LLEKRNMYI-DDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL-QVPVVA 381 (471)
T ss_pred HHhcCCEEE-ECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh-CCeEEE
Confidence 100122322 221 12222233333333322 3589999999999864321 1121 12 2233333332 788999
Q ss_pred Eee
Q 010563 199 LTA 201 (507)
Q Consensus 199 lSA 201 (507)
+|-
T Consensus 382 LsQ 384 (471)
T PRK08006 382 LSQ 384 (471)
T ss_pred EEe
Confidence 884
No 346
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=0.67 Score=50.30 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=24.1
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (507)
+...+|||||+|.+.. .....|.......|...++++.+|-
T Consensus 119 ~~~kVvIIDEa~~L~~------~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 119 ARYKVYIIDEVHMLST------AAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred CCeEEEEEeChHhCCH------HHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 4468999999999864 2233444444444444455555543
No 347
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=93.46 E-value=0.75 Score=48.90 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
+.+++.+|+|+|||+....
T Consensus 89 ~giLL~GppGtGKT~la~a 107 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKA 107 (495)
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 4699999999999976543
No 348
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.32 E-value=0.43 Score=49.81 Aligned_cols=142 Identities=19% Similarity=0.182 Sum_probs=64.6
Q ss_pred CCEEEEcCCCchHHHHHH-HHH--h-cCCCeEEEec---ChHHHHHHHHHHHHH--cCCceEEecCC-CCHHHHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ-IPA--L-AKPGIVLVVS---PLIALMENQVIGLKE--KGIAGEFLSST-QTMQVKTKIYED 123 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~-lp~--l-~~~~~~lvi~---P~~~L~~q~~~~l~~--~gi~~~~~~~~-~~~~~~~~~~~~ 123 (507)
.=+++.|+||+|||...+ +.. . ..+..+++++ |...++ +++.. .++....+..+ ....+.......
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~----~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a 271 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA----MRMLSSESRVDSQKLRTGKLSDEDWEKLTSA 271 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH----HHHHHHhcCCCHHHhccCCCCHHHHHHHHHH
Confidence 346788899999995433 221 1 2345677776 333443 33333 23332222222 222222222221
Q ss_pred hhcCCCcccEEE-ECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCH-HHH----HHHHHHHHhCCCCCE
Q 010563 124 LDSGKPSLRLLY-VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFR-PSY----RKLSSLRNYLPDVPI 196 (507)
Q Consensus 124 ~~~~~~~~~il~-~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr-~~~----~~l~~l~~~~~~~~~ 196 (507)
..... ...+.+ .+|. +.-......+........+++||||=.+.+..-+. +-| ..+ +.|..+...+ ++|+
T Consensus 272 ~~~l~-~~~l~i~d~~~-~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~-~i~v 348 (434)
T TIGR00665 272 AGKLS-EAPLYIDDTPG-LTITELRAKARRLKREHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKEL-NVPV 348 (434)
T ss_pred HHHHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHh-CCeE
Confidence 11111 122222 2222 21123333444444444589999999988853221 112 112 2233333332 7888
Q ss_pred EEEeec
Q 010563 197 LALTAT 202 (507)
Q Consensus 197 i~lSAT 202 (507)
+++|-.
T Consensus 349 i~lsql 354 (434)
T TIGR00665 349 IALSQL 354 (434)
T ss_pred EEEecc
Confidence 888764
No 349
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.32 E-value=0.15 Score=56.17 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHH--HH-hc----CCCeEEEecChHHHHHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--PA-LA----KPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~l--p~-l~----~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
.|++-|.+|+.. ....++|.|+.|||||.+..- .- +. .+..+|+|+.|+..+.+..+++.+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 378999999875 356789999999999965432 22 22 245799999999999998888876
No 350
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.24 E-value=0.27 Score=53.92 Aligned_cols=83 Identities=23% Similarity=0.252 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC-CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccC
Q 010563 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324 (507)
Q Consensus 246 ~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~ 324 (507)
++.+.+.|.. +..+||-++.+....++.+.|+.+ |.+++.+|+++++.+|.....+..+|+.+|+|.|-.+-. .=+
T Consensus 235 l~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-~Pf 311 (730)
T COG1198 235 LEAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-LPF 311 (730)
T ss_pred HHHHHHHHHc--CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-Cch
Confidence 3444444444 457999999999999999999876 889999999999999999999999999999999854321 223
Q ss_pred CCccEEE
Q 010563 325 KDVRLVC 331 (507)
Q Consensus 325 p~v~~VI 331 (507)
++..+||
T Consensus 312 ~~LGLII 318 (730)
T COG1198 312 KNLGLII 318 (730)
T ss_pred hhccEEE
Confidence 4455555
No 351
>PRK05636 replicative DNA helicase; Provisional
Probab=93.22 E-value=0.37 Score=51.09 Aligned_cols=151 Identities=16% Similarity=0.179 Sum_probs=70.2
Q ss_pred HHHHHHcC---CC-EEEEcCCCchHHHHHH-HH---HhcCCCeEEEec---ChHHHHHHHHHHHHHcCCceEEec-CCCC
Q 010563 46 AIQAVLSG---RD-CFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQT 113 (507)
Q Consensus 46 ~i~~i~~g---~d-~lv~apTG~GKTl~~~-lp---~l~~~~~~lvi~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~~ 113 (507)
.++.+..| .+ +++.|.||.|||...+ +. ++..+..+++++ |...|+...+... .+++...+. +..+
T Consensus 254 ~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~--s~v~~~~i~~g~l~ 331 (505)
T PRK05636 254 DLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAE--AEVRLSDMRGGKMD 331 (505)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHh--cCCCHHHHhcCCCC
Confidence 34444444 34 5678899999995433 22 223345667774 4444544333222 123222122 2233
Q ss_pred HHHHHHHHHHhhcCCCcccEEEE-CcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCHHH-----HHHHHH
Q 010563 114 MQVKTKIYEDLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPS-----YRKLSS 186 (507)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~-tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~~-----~~~l~~ 186 (507)
..+...+...+.... ...+.+- +| -+.-........+......+++||||=.|.+..-.. .-|.. .+.|+.
T Consensus 332 ~~e~~~~~~a~~~l~-~~~l~I~d~~-~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~ 409 (505)
T PRK05636 332 EDAWEKLVQRLGKIA-QAPIFIDDSA-NLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKL 409 (505)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCC-CCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 344433333322111 1223322 22 111122333344443345589999999999864221 11221 123333
Q ss_pred HHHhCCCCCEEEEee
Q 010563 187 LRNYLPDVPILALTA 201 (507)
Q Consensus 187 l~~~~~~~~~i~lSA 201 (507)
+...+ ++|++++|-
T Consensus 410 lAkel-~ipVi~lsQ 423 (505)
T PRK05636 410 LAKEL-DVPLIAISQ 423 (505)
T ss_pred HHHHh-CCeEEEEee
Confidence 33332 788888874
No 352
>PHA02542 41 41 helicase; Provisional
Probab=93.19 E-value=0.67 Score=48.73 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=70.5
Q ss_pred HHHHHHHH-cC---CC-EEEEcCCCchHHHHHHHHH---hcCCCeEEEec---ChHHHHHHHHHHHHHcCCceEEecCCC
Q 010563 44 LDAIQAVL-SG---RD-CFCLMPTGGGKSMCYQIPA---LAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSSTQ 112 (507)
Q Consensus 44 ~~~i~~i~-~g---~d-~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~---P~~~L~~q~~~~l~~~gi~~~~~~~~~ 112 (507)
...++.+. .| .+ +++.|+||.|||...+--+ ...+..+++++ |...|+....... .++....+.. .
T Consensus 176 ~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~a~~--~~i~~~~l~~-l 252 (473)
T PHA02542 176 LEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRIDANL--LDVSLDDIDD-L 252 (473)
T ss_pred cHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHH--cCCCHHHHhh-c
Confidence 44566666 33 23 5678899999996544222 23455677776 4444433322221 2333221211 2
Q ss_pred CHHHHHHHHHHhhcCCCcccEE-EECcc-cccChhhHHHHHhhhccC--CccEEEEecccccccc-----CCCCHH----
Q 010563 113 TMQVKTKIYEDLDSGKPSLRLL-YVTPE-LTATPGFMSKLKKIHSRG--LLNLVAIDEAHCISSW-----GHDFRP---- 179 (507)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~il-~~tpe-~~~t~~~~~~l~~~~~~~--~l~~iViDEaH~i~~~-----g~~fr~---- 179 (507)
...........+.... ...+. +..|. .+....+...+.+..... .+++||||=.+.+..- +.+-..
T Consensus 253 ~~~~~~~~~~~~~~~~-~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~ 331 (473)
T PHA02542 253 SKAEYKAKMEKLRSKT-QGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKA 331 (473)
T ss_pred CHHHHHHHHHHHHHHh-CCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHH
Confidence 2222222222221110 12222 22222 232233444443333222 3899999999998521 111111
Q ss_pred HHHHHHHHHHhCCCCCEEEEeec
Q 010563 180 SYRKLSSLRNYLPDVPILALTAT 202 (507)
Q Consensus 180 ~~~~l~~l~~~~~~~~~i~lSAT 202 (507)
..+.|..+...+ ++|++++|-.
T Consensus 332 Isr~LK~lAkel-~vpVi~lsQL 353 (473)
T PHA02542 332 IAEELRGLAVEH-DVVVWTAAQT 353 (473)
T ss_pred HHHHHHHHHHHh-CCeEEEEEee
Confidence 123333333333 7889988765
No 353
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.19 E-value=0.67 Score=51.59 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
..++++.+|+|+|||....
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997654
No 354
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.18 E-value=0.093 Score=57.28 Aligned_cols=57 Identities=25% Similarity=0.245 Sum_probs=47.6
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEecChHHHHHHHHHHHHHcCCceEEecC
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~-~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~ 110 (507)
+.+++.||||+|||..+.+|.+.. ++.+||+=|--++........++.|-.+..++-
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~FnP 197 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFAP 197 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEecC
Confidence 478999999999999999998765 678888889999988887777778877765553
No 355
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.16 E-value=0.8 Score=45.22 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.7
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
..+++.+|+|+|||....
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999996543
No 356
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.16 E-value=1.3 Score=44.33 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
+.++.++|+|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 67999999999999754
No 357
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.15 E-value=0.54 Score=52.50 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
.++++.+|+|+|||....
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 589999999999997653
No 358
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.11 E-value=0.4 Score=47.55 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=32.5
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHH
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~ 213 (507)
.+..+++|||+||.+..-. -..|-+..+.-|..-+++|.++-+..+...|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESA------SNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred cCCceEEEecchhhhCHHH------HHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 4568899999999986522 244555555545445666666666555554443
No 359
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.08 E-value=0.48 Score=50.23 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.0
Q ss_pred EEEEcCCCchHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~l 72 (507)
+++.+|+|+|||.+...
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 49999999999976543
No 360
>PRK06321 replicative DNA helicase; Provisional
Probab=93.01 E-value=0.72 Score=48.49 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=73.2
Q ss_pred HHHHHHHcC---CC-EEEEcCCCchHHHHHHHHH----hcCCCeEEEec---ChHHHHHHHHHHHHHcCCceEEec-CCC
Q 010563 45 DAIQAVLSG---RD-CFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQ 112 (507)
Q Consensus 45 ~~i~~i~~g---~d-~lv~apTG~GKTl~~~lp~----l~~~~~~lvi~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~ 112 (507)
..++.+..| .+ +++.|.||.|||.-.+--+ ...+..+++++ |...|+...... ..+++...+. ...
T Consensus 214 ~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~--~s~v~~~~i~~~~l 291 (472)
T PRK06321 214 IDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICS--RSEVESKKISVGDL 291 (472)
T ss_pred HHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHh--hcCCCHHHhhcCCC
Confidence 345555544 34 5677899999995433211 12345677776 444444433221 1234332222 222
Q ss_pred CHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC--CCHHHHHHHHHHHHh
Q 010563 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNY 190 (507)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~--~fr~~~~~l~~l~~~ 190 (507)
+..+...+......-. ...+++--...+.................+++||||=.+.+..-+. ....-...+..+...
T Consensus 292 ~~~e~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~ 370 (472)
T PRK06321 292 SGRDFQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRM 370 (472)
T ss_pred CHHHHHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHH
Confidence 3334433333322211 1233332111222233444444444445699999999999864331 111112223332222
Q ss_pred C------CCCCEEEEeec
Q 010563 191 L------PDVPILALTAT 202 (507)
Q Consensus 191 ~------~~~~~i~lSAT 202 (507)
+ -++|++++|-.
T Consensus 371 LK~lAkel~vpVi~lsQL 388 (472)
T PRK06321 371 LKNLARELNIPILCLSQL 388 (472)
T ss_pred HHHHHHHhCCcEEEEeec
Confidence 2 17888888774
No 361
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.00 E-value=0.48 Score=51.27 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=93.2
Q ss_pred CCcHHHHHHHHHHHc--------CC-CEEEEc-CCCchH--HHHHHHH-H-hcCCCeEEEecChHHHHHHHHHHHHHcC-
Q 010563 38 QFRDKQLDAIQAVLS--------GR-DCFCLM-PTGGGK--SMCYQIP-A-LAKPGIVLVVSPLIALMENQVIGLKEKG- 102 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~--------g~-d~lv~a-pTG~GK--Tl~~~lp-~-l~~~~~~lvi~P~~~L~~q~~~~l~~~g- 102 (507)
.+...|.+++-...+ |. -.++++ ..|.|| |.+-++. - |.-..++|+++-...|-.|--+.|+..|
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA 343 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGA 343 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCC
Confidence 477899998866543 32 233333 455555 4332221 1 2234579999999999888888888854
Q ss_pred --CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECccccc------ChhhHHH---HHhhhccCCccEEEEecccccc
Q 010563 103 --IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA------TPGFMSK---LKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 103 --i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~------t~~~~~~---l~~~~~~~~l~~iViDEaH~i~ 171 (507)
|.+..++.-...+... -..+..+--++++|.--+- +..+..+ |....-..-=++||+||||...
T Consensus 344 ~~I~V~alnK~KYakIss-----~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAK 418 (1300)
T KOG1513|consen 344 TGIAVHALNKFKYAKISS-----KENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAK 418 (1300)
T ss_pred CCccceehhhcccccccc-----cccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhc
Confidence 4444444222211111 1122223457788775331 1122222 3333323334799999999976
Q ss_pred cc----CCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhH
Q 010563 172 SW----GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (507)
Q Consensus 172 ~~----g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~ 208 (507)
.. |..--..=..+..|...+|+.+++.-|||-..+.+
T Consensus 419 NL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsEPr 459 (1300)
T KOG1513|consen 419 NLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASEPR 459 (1300)
T ss_pred ccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCCcc
Confidence 51 00001111556778889999999999999665443
No 362
>PRK04328 hypothetical protein; Provisional
Probab=92.98 E-value=0.068 Score=51.26 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=32.2
Q ss_pred CCCEEEEcCCCchHHH-HHHH--HHhcCCCeEEEecChHHHHHHHHHHHHHcCC
Q 010563 53 GRDCFCLMPTGGGKSM-CYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (507)
Q Consensus 53 g~d~lv~apTG~GKTl-~~~l--p~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi 103 (507)
|.-+++.+|+|+|||. +.++ -.+.++..+++++ +-+-..+..+.++++|.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 4568899999999984 4443 2345666777776 33334455566666665
No 363
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=1.1 Score=47.75 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=26.9
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q 93 (507)
+-+++.+|+|+|||+.....+...+...+-+... +|+..
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk 315 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSK 315 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhcc
Confidence 3589999999999988777766555544444433 66543
No 364
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.96 E-value=0.6 Score=50.50 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=28.2
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~ 210 (507)
+..+++||||+|.++.. ....|....+..|..-+++|.+|-+..+...
T Consensus 118 ~~~KVvIIdev~~Lt~~------a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTN------AFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCceEEEEEChhhCCHH------HHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 45789999999998752 2345555555555433444444544444333
No 365
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.94 E-value=3.9 Score=42.40 Aligned_cols=53 Identities=19% Similarity=0.101 Sum_probs=31.2
Q ss_pred CEEEEcCCCchHHHHHHH-HH-hc--CCCeEEEec--ChHHHHHHHHHHH-HHcCCceEE
Q 010563 55 DCFCLMPTGGGKSMCYQI-PA-LA--KPGIVLVVS--PLIALMENQVIGL-KEKGIAGEF 107 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~l-p~-l~--~~~~~lvi~--P~~~L~~q~~~~l-~~~gi~~~~ 107 (507)
-+++++|+|+|||.+..- .. +. .+.++++|. +.+.-+.+|...+ ...|++...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 367899999999966442 22 22 344555554 4555556666554 345655443
No 366
>PRK09354 recA recombinase A; Provisional
Probab=92.93 E-value=0.59 Score=46.83 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=55.6
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchHHHHHHH---HHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 010563 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (507)
Q Consensus 46 ~i~~i~~-g-----~d~lv~apTG~GKTl~~~l---p~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (507)
.++.++. | +-+.+.+|+|+|||...+- .+...++.+++|..--++-. +.++.+|+..
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvdl----------- 112 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVDI----------- 112 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCCH-----------
Confidence 4566666 3 4577999999999954332 22345778888876666543 3445555431
Q ss_pred HHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
-++++..|.. ....+..+......+.+++||||=+-.+.
T Consensus 113 --------------d~lli~qp~~--~Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 113 --------------DNLLVSQPDT--GEQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred --------------HHeEEecCCC--HHHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 1233444432 11122333344445668999999876653
No 367
>PRK08506 replicative DNA helicase; Provisional
Probab=92.90 E-value=0.47 Score=50.04 Aligned_cols=155 Identities=19% Similarity=0.170 Sum_probs=70.7
Q ss_pred HHHHHHHHcC----CCEEEEcCCCchHHHHHHHH---HhcCCCeEEEecChHHHHHHHHHHHHH--cCCceEEec-CCCC
Q 010563 44 LDAIQAVLSG----RDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQT 113 (507)
Q Consensus 44 ~~~i~~i~~g----~d~lv~apTG~GKTl~~~lp---~l~~~~~~lvi~P~~~L~~q~~~~l~~--~gi~~~~~~-~~~~ 113 (507)
...++.+..| .=+++.|+||.|||...+-- +...+..+++++.- .-..|.+.++-. .|++...+. ...+
T Consensus 179 ~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~ 257 (472)
T PRK08506 179 FVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLD 257 (472)
T ss_pred hHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 3344555443 33677889999999543322 22344567777632 222333444433 333322222 2223
Q ss_pred HHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCCCCHHHHH-------HHH
Q 010563 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYR-------KLS 185 (507)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~~fr~~~~-------~l~ 185 (507)
..+...+........ ...+.+-..--+........+.+.... +.+++||||=.+.+..-+. +..... .|.
T Consensus 258 ~~e~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~-~~~r~~ev~~isr~LK 335 (472)
T PRK08506 258 DDEWERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGN-FKDRHLQISEISRGLK 335 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCC-CCCHHHHHHHHHHHHH
Confidence 333333222222111 122333211122222333333333322 3589999999998864332 222222 233
Q ss_pred HHHHhCCCCCEEEEeec
Q 010563 186 SLRNYLPDVPILALTAT 202 (507)
Q Consensus 186 ~l~~~~~~~~~i~lSAT 202 (507)
.+...+ ++|++++|-.
T Consensus 336 ~lAkel-~ipVi~lsQL 351 (472)
T PRK08506 336 LLAREL-DIPIIALSQL 351 (472)
T ss_pred HHHHHh-CCcEEEEeec
Confidence 333322 7888888753
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=92.83 E-value=3.4 Score=42.90 Aligned_cols=51 Identities=24% Similarity=0.170 Sum_probs=30.0
Q ss_pred EEEEcCCCchHHHHHHHHH--hc-C-CCeEEEec--ChHHHHHHHHHHH-HHcCCceE
Q 010563 56 CFCLMPTGGGKSMCYQIPA--LA-K-PGIVLVVS--PLIALMENQVIGL-KEKGIAGE 106 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~--l~-~-~~~~lvi~--P~~~L~~q~~~~l-~~~gi~~~ 106 (507)
+++++|+|+|||.+..--+ +. . +.++++|. +.+.-+.+|...+ ...|++..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 6788999999996544322 22 3 44555554 5566555555444 33555543
No 369
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.83 E-value=0.61 Score=52.18 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
++.+++.+|+|+|||.....
T Consensus 212 ~~giLL~GppGtGKT~lara 231 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKA 231 (733)
T ss_pred CceEEEECCCCCChHHHHHH
Confidence 46799999999999965443
No 370
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.82 E-value=0.28 Score=55.74 Aligned_cols=74 Identities=11% Similarity=0.123 Sum_probs=63.5
Q ss_pred CccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc-cccccCCCccEEE
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVC 331 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~~GiD~p~v~~VI 331 (507)
+.+++|.++|+.-|.+.++.+++. ++++..++++.+.+++..+++.+.+|+.+|+|+|..+ ...+.+.++.+||
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 457999999999999999888763 6678899999999999999999999999999999854 4457778888877
No 371
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.78 E-value=2.8 Score=45.50 Aligned_cols=147 Identities=13% Similarity=0.067 Sum_probs=73.2
Q ss_pred HHcCCCEEEEcCCCchHHHHHHHH---Hhc-CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhh
Q 010563 50 VLSGRDCFCLMPTGGGKSMCYQIP---ALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLD 125 (507)
Q Consensus 50 i~~g~d~lv~apTG~GKTl~~~lp---~l~-~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~ 125 (507)
.++.+-.++.+|=|-|||.+..+. .+. .+..++|.+|...-+++..+.++..-.... ..........+ ....
T Consensus 184 ~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg---~~~~fp~~~~i-v~vk 259 (752)
T PHA03333 184 EYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQ---HKPWFPEEFKI-VTLK 259 (752)
T ss_pred HHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhc---cccccCCCceE-EEee
Confidence 345566788999999999553321 122 456899999988877776666555211000 00000000000 0011
Q ss_pred cCCCcccEEEECccccc----ChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEee
Q 010563 126 SGKPSLRLLYVTPELTA----TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201 (507)
Q Consensus 126 ~~~~~~~il~~tpe~~~----t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSA 201 (507)
.+ ...+.|..|.-.. +-.|...-.....-...+++|||||+-+.. +.+..+.-+... .+.|++.+|.
T Consensus 260 gg--~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~------~~l~aIlP~l~~-~~~k~IiISS 330 (752)
T PHA03333 260 GT--DENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP------GALLSVLPLMAV-KGTKQIHISS 330 (752)
T ss_pred CC--eeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH------HHHHHHHHHHcc-CCCceEEEeC
Confidence 11 1234444443221 000100001111112368999999998854 223334333333 3678888888
Q ss_pred cCChhhHH
Q 010563 202 TAAPKVQK 209 (507)
Q Consensus 202 T~~~~~~~ 209 (507)
+-+....-
T Consensus 331 ~~~~~s~t 338 (752)
T PHA03333 331 PVDADSWI 338 (752)
T ss_pred CCCcchHH
Confidence 87655443
No 372
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.61 E-value=0.18 Score=56.12 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=48.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHH-hc----CCCeEEEecChHHHHHHHHHHHHHc
Q 010563 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~--lp~-l~----~~~~~lvi~P~~~L~~q~~~~l~~~ 101 (507)
..|++-|.+|+.. ....++|.|..|||||.+.. +.- +. .+..+|+|+.|+..+.+..+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999865 34679999999999996533 222 22 2457999999999998888887763
No 373
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.60 E-value=1 Score=41.04 Aligned_cols=118 Identities=19% Similarity=0.123 Sum_probs=48.5
Q ss_pred cCCCEEEEcCCCchHHHHHH-HH-Hhc-----------CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ-IP-ALA-----------KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~-lp-~l~-----------~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~ 118 (507)
.|.=+++.||+|+|||...+ +. .+. .+.+++++..-.. ..+..+++...+... ......
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-------~~~~~~ 102 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-------DDDANL 102 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS--------HHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-------CCccce
Confidence 35558899999999995432 22 122 3557888875544 334555555532111 111111
Q ss_pred HHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhcc-CCccEEEEeccccccccCCCCHH
Q 010563 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRP 179 (507)
Q Consensus 119 ~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~-~~l~~iViDEaH~i~~~g~~fr~ 179 (507)
.... .... ...+++.........+..+..+.+.... ..+++||||=...+..-+.+...
T Consensus 103 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~ 162 (193)
T PF13481_consen 103 FFVD-LSNW-GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNS 162 (193)
T ss_dssp HHHH-H--E--EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HH
T ss_pred EEee-cccc-ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHH
Confidence 1111 1110 0111111110011123344455544444 56999999999988765444444
No 374
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=92.55 E-value=1.7 Score=46.86 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHh---cCCCeEEEecChHHHHHHHHHH
Q 010563 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPAL---AKPGIVLVVSPLIALMENQVIG 97 (507)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~--~lp~l---~~~~~~lvi~P~~~L~~q~~~~ 97 (507)
-+.+.+.|+.+|+...+... +-...+.+-.++..|==.|||... ++..+ ..+-.++++.|.+..++...++
T Consensus 228 a~r~~~~lk~~Fdi~~~s~~----~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~e 303 (738)
T PHA03368 228 AERVERFLRTVFNTPLFSDA----AVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEE 303 (738)
T ss_pred HHHHHHHHHHHcCCccccHH----HHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHH
Confidence 35677889999998876542 333446677788889999999643 23322 2467899999999999888888
Q ss_pred HHHc
Q 010563 98 LKEK 101 (507)
Q Consensus 98 l~~~ 101 (507)
+..+
T Consensus 304 I~~~ 307 (738)
T PHA03368 304 IGAR 307 (738)
T ss_pred HHHH
Confidence 7763
No 375
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.54 E-value=3.4 Score=41.92 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=28.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMES 214 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~ 214 (507)
...++|+||=+-+... -......+..+.... |...++.+|||........+.+.
T Consensus 284 ~~~D~VLIDTAGr~~~----d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~ 338 (407)
T PRK12726 284 NCVDHILIDTVGRNYL----AEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPK 338 (407)
T ss_pred CCCCEEEEECCCCCcc----CHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHh
Confidence 3468899988865321 233344455544432 23335566776665544444443
No 376
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.52 E-value=0.13 Score=55.89 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=47.5
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEecChHHHHHHHHHHHHHcCCceEEecCC
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~-~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~ 111 (507)
..+++.||||+|||..+.+|.+.. ++.+||+=|--++..-.....++.|-++..++-.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP~ 283 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPT 283 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 468999999999999999999876 6678888899999887777777777777666543
No 377
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.50 E-value=0.33 Score=48.20 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHH--HHHHh---cCCCeEEEecChHHH
Q 010563 39 FRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCY--QIPAL---AKPGIVLVVSPLIAL 90 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~-g~d~lv~apTG~GKTl~~--~lp~l---~~~~~~lvi~P~~~L 90 (507)
+.+.|.+.+..+.. +.++++.++||+|||... ++..+ ....+++++=...+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 67888888766654 568999999999999532 22222 123456666555555
No 378
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.49 E-value=0.89 Score=45.40 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHc--C---CCEEEEcCCCchHHHHHH
Q 010563 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~--g---~d~lv~apTG~GKTl~~~ 71 (507)
++|||...+..+.. + +-.++.+|.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 36888888888773 3 247899999999996544
No 379
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.47 E-value=0.2 Score=55.91 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=48.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHh-c----CCCeEEEecChHHHHHHHHHHHHHc
Q 010563 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A----KPGIVLVVSPLIALMENQVIGLKEK 101 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~--lp~l-~----~~~~~lvi~P~~~L~~q~~~~l~~~ 101 (507)
..|++-|.+|+... ...++|.|..|||||.+.. +.-| . .+..+|+|+-|+..+.+..+++.++
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 35899999998753 4579999999999996543 2222 2 3457999999999999988888763
No 380
>CHL00181 cbbX CbbX; Provisional
Probab=92.45 E-value=0.92 Score=44.45 Aligned_cols=20 Identities=15% Similarity=-0.042 Sum_probs=15.9
Q ss_pred CCEEEEcCCCchHHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp 73 (507)
.++++.+|+|+|||..+..-
T Consensus 60 ~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35899999999999766443
No 381
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.43 E-value=1.3 Score=44.76 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=13.5
Q ss_pred CEEEEcCCCchHHHHH
Q 010563 55 DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv~apTG~GKTl~~ 70 (507)
..++.||+|+|||...
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 382
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.41 E-value=2.7 Score=46.48 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=31.0
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhhHHHHHHHh
Q 010563 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESL 215 (507)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l 215 (507)
.++|+||=+-+... -......+..+... .|...++.++||.......++.+.+
T Consensus 264 ~D~VLIDTAGRs~~----d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 264 KHLVLIDTVGMSQR----DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CCEEEEeCCCCCcc----CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 47888887765321 22333444444332 2445578888988777666666555
No 383
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.39 E-value=0.42 Score=44.47 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=27.9
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
.++...||+|||+.+.+ | .-+.|.+....+.+....+|-.-.+.+.
T Consensus 111 ~grhKIiILDEADSMT~-g-----AQQAlRRtMEiyS~ttRFalaCN~s~KI 156 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-G-----AQQALRRTMEIYSNTTRFALACNQSEKI 156 (333)
T ss_pred CCceeEEEeeccchhhh-H-----HHHHHHHHHHHHcccchhhhhhcchhhh
Confidence 35578999999999865 2 1245556666666555555544333333
No 384
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.36 E-value=7.5 Score=34.62 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=25.6
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhhHH
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQK 209 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~ 209 (507)
..+++|||....... -......+..+... .+...++.+.|.......+
T Consensus 82 ~~d~viiDt~g~~~~----~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~ 130 (173)
T cd03115 82 NFDVVIVDTAGRLQI----DENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVN 130 (173)
T ss_pred CCCEEEEECcccchh----hHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHH
Confidence 467899999876431 11223444444432 2455566677754444443
No 385
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.33 E-value=0.1 Score=61.22 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=77.3
Q ss_pred ccEEEEeccchhHHHHHHHHHhCC-CceeEecCCCC-----------HHHHHHHHHHHhcCCceEEEEeCcccccccCCC
Q 010563 259 TCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLN-----------DKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~g-~~~~~~h~~l~-----------~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~ 326 (507)
-++|+|+..+..+..+.+.+.+.+ ..+..+.|.+. ...+.+++..|...++.+|++|+++..|+|.+.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 468999999999988888887652 22233444332 123567888999999999999999999999999
Q ss_pred ccEEEEeCCCCCHHHHHHHhcccCCCC
Q 010563 327 VRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (507)
Q Consensus 327 v~~VI~~~~p~s~~~y~Q~~GRagR~g 353 (507)
+..|++++.|.....|+|..||+-+..
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997654
No 386
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.32 E-value=3.4 Score=43.43 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=29.2
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhC
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~ 216 (507)
..++++||.+-.. +.-......+..+.... |...++.++||.......++.+.+.
T Consensus 334 d~d~VLIDTaGr~----~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~ 389 (484)
T PRK06995 334 NKHIVLIDTIGMS----QRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR 389 (484)
T ss_pred CCCeEEeCCCCcC----hhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc
Confidence 3578899996432 11111112222222211 3335788999998877776666543
No 387
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.28 E-value=0.34 Score=46.42 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=16.0
Q ss_pred CEEEEcCCCchHHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~ 74 (507)
.+++.+|+|.|||..+.+-+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHH
Confidence 58999999999997655443
No 388
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.21 E-value=0.96 Score=46.46 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.1
Q ss_pred CCEEEEcCCCchHHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp 73 (507)
+.+++.+|+|+|||+..-.-
T Consensus 166 ~gvLL~GppGtGKT~lAkai 185 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAV 185 (389)
T ss_pred CceEEECCCCCChHHHHHHH
Confidence 46999999999999765443
No 389
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=92.20 E-value=0.18 Score=54.59 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=45.8
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEecChHHHHHHHHHHHHHcC-CceEEecC
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKG-IAGEFLSS 110 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~-~~~~lvi~P~~~L~~q~~~~l~~~g-i~~~~~~~ 110 (507)
..+++.||||+|||..+.+|.+.. ++.+||+=|--++..-.....++.| -++..+.-
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfdP 270 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLDP 270 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 479999999999999999998776 6788999999999877766666666 55555543
No 390
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.15 E-value=0.7 Score=45.90 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=54.6
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchHHHHHHHHH---hcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 010563 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (507)
Q Consensus 46 ~i~~i~~-g-----~d~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (507)
.++.++. | +-+.+.+|+|+|||...+-.+ ...++.+++|.+--++-.+ .++.+|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd~----------- 107 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVDL----------- 107 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCCH-----------
Confidence 4566666 3 457899999999995443222 2456788888876665432 344444321
Q ss_pred HHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
-++++..|... ...+..+..+...+.+++||||=+-.+.
T Consensus 108 --------------~~l~v~~p~~~--eq~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 108 --------------DNLLISQPDTG--EQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred --------------HHheecCCCCH--HHHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 12333333311 1122333334445568999999876553
No 391
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=1.5 Score=45.72 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=32.3
Q ss_pred CCccEEEEeccccccccCCCCHHHH--HHHHHHHHh----CCCCCEEEEeecCChhhHH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNY----LPDVPILALTATAAPKVQK 209 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~--~~l~~l~~~----~~~~~~i~lSAT~~~~~~~ 209 (507)
.....|.|||.|.+..--..--..| ..|..+... -++-.+|.+-||--++..+
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 3467899999999865221111112 233333332 2477899999998777655
No 392
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.11 E-value=0.91 Score=45.51 Aligned_cols=135 Identities=12% Similarity=0.070 Sum_probs=71.6
Q ss_pred CcHHHHHHHHHHH----cCC---CEEEEcCCCchHHHHHHH-H--HhcCCC---eEEEecChHHHHHHHHHHHHHcCCce
Q 010563 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQI-P--ALAKPG---IVLVVSPLIALMENQVIGLKEKGIAG 105 (507)
Q Consensus 39 ~r~~Q~~~i~~i~----~g~---d~lv~apTG~GKTl~~~l-p--~l~~~~---~~lvi~P~~~L~~q~~~~l~~~gi~~ 105 (507)
++|||..++..+. +|+ -.++.||.|.||+..+.. . .+...+ ...=.|+.=.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~---------------- 66 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQ---------------- 66 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHH----------------
Confidence 5688888887765 343 578999999999955432 2 122111 0000111111
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCcccEEEECccc----ccChhh---HHHHHhhhccCCccEEEEeccccccccCCCCH
Q 010563 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL----TATPGF---MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (507)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~----~~t~~~---~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (507)
.+..+ ...++.+.+||. +.-... ...+......+..+++|||+||.|..-.
T Consensus 67 -----------------~~~~g-~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~A---- 124 (334)
T PRK07993 67 -----------------LMQAG-THPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAA---- 124 (334)
T ss_pred -----------------HHHcC-CCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHH----
Confidence 11111 235566666663 222222 1222223334668899999999986521
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHH
Q 010563 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (507)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~ 213 (507)
-..|-+..+.-|..-+++|.+.-+..+...|..
T Consensus 125 --aNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 125 --ANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred --HHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 244544555445555666666666655555443
No 393
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.10 E-value=0.97 Score=44.24 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
..+++.+|+|+|||.++
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 36899999999999766
No 394
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.04 E-value=1.7 Score=40.69 Aligned_cols=50 Identities=22% Similarity=0.128 Sum_probs=33.2
Q ss_pred CCCEEEEcCCCchHHH-HHHHH--HhcCCCeEEEecChHHHHHHHHHHHHHcCC
Q 010563 53 GRDCFCLMPTGGGKSM-CYQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (507)
Q Consensus 53 g~d~lv~apTG~GKTl-~~~lp--~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi 103 (507)
|.-+++.+++|+|||. +.++. .+.++..+++++.-. -..+..+.+.++|.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSKGW 68 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHcCC
Confidence 4567899999999984 44443 345566777776543 34566667777764
No 395
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.90 E-value=3.4 Score=41.74 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=26.1
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (507)
.+...++||||||.+..- ....|-...+..|...++++.++.+.
T Consensus 139 ~g~~rVviIDeAd~l~~~------aanaLLk~LEEpp~~~~fiLit~~~~ 182 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN------AANAILKTLEEPPARALFILISHSSG 182 (351)
T ss_pred cCCceEEEEEchhhcCHH------HHHHHHHHHhcCCCCceEEEEECChh
Confidence 456789999999998542 22344445555454445444444443
No 396
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.89 E-value=0.79 Score=49.32 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=47.6
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHh----cCCCeEEEecChHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVI 96 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~~lp~l----~~~~~~lvi~P~~~L~~q~~~ 96 (507)
..+|+|.+.++++... +.+.+..++-+|||.+.+..+. ..++.+|++.||..++++.+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~ 80 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSK 80 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHH
Confidence 4679999999998765 5788899999999985544332 357889999999999998874
No 397
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.89 E-value=0.76 Score=45.58 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=53.5
Q ss_pred HHHHHHc-C-----CCEEEEcCCCchHHHHHH-H--HHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 010563 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (507)
Q Consensus 46 ~i~~i~~-g-----~d~lv~apTG~GKTl~~~-l--p~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (507)
.++.++. | +-+.+.+|+|+|||...+ + -+...++.+++|..--++-.. .++.+|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~----------- 107 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI----------- 107 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH-----------
Confidence 4555664 3 457899999999995433 2 223456778888665444332 344455421
Q ss_pred HHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
-++++..|... ...+..+......+.+++||||-+-.+.
T Consensus 108 --------------~~l~v~~p~~~--eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 108 --------------DNLLVSQPDTG--EQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred --------------HHeEEecCCCH--HHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 12334444321 1122333334444568999999987654
No 398
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=0.17 Score=49.15 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.2
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
.++++++|||||||+.++-
T Consensus 98 SNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred ccEEEECCCCCcHHHHHHH
Confidence 4699999999999987764
No 399
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.74 E-value=0.4 Score=47.33 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=42.5
Q ss_pred cCCCCCcHHHHHHHHHHHcCC-CEEEEcCCCchHHHH-HHHHHh-cCCCeEEEecChHHH
Q 010563 34 FGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMC-YQIPAL-AKPGIVLVVSPLIAL 90 (507)
Q Consensus 34 fg~~~~r~~Q~~~i~~i~~g~-d~lv~apTG~GKTl~-~~lp~l-~~~~~~lvi~P~~~L 90 (507)
..|..+.+.|.+.+..+..++ ++++.+.||||||.. ..+... ....++|.+=-+.+|
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaEL 212 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAEL 212 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhh
Confidence 356678999999998888776 999999999999953 222222 234578888777776
No 400
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=91.71 E-value=0.19 Score=45.15 Aligned_cols=116 Identities=21% Similarity=0.215 Sum_probs=49.0
Q ss_pred EEEcCCCchHHHHHHHHH--hcCC--CeEEEecChHHHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCC
Q 010563 57 FCLMPTGGGKSMCYQIPA--LAKP--GIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (507)
Q Consensus 57 lv~apTG~GKTl~~~lp~--l~~~--~~~lvi~P~~~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (507)
++.|+-|-|||.+.-+.+ +... ..++|.+|..+=++...+.+.. +|.+. . ..........+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-----~--~~~~~~~~~~~~~-- 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-----E--KKKRIGQIIKLRF-- 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccc-----c--ccccccccccccc--
Confidence 468999999997654433 2233 3689999998755443333221 22111 0 0000000000111
Q ss_pred CcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 010563 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (507)
Q Consensus 129 ~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (507)
....+-|.+|+.+.... ...+++|||||=.+.- ..|..+ ....+.++||.|..
T Consensus 72 ~~~~i~f~~Pd~l~~~~-----------~~~DlliVDEAAaIp~---------p~L~~l---l~~~~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAEK-----------PQADLLIVDEAAAIPL---------PLLKQL---LRRFPRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT---------------SCEEECTGGGS-H---------HHHHHH---HCCSSEEEEEEEBS
T ss_pred ccceEEEECCHHHHhCc-----------CCCCEEEEechhcCCH---------HHHHHH---HhhCCEEEEEeecc
Confidence 13556666666443311 1258999999988643 233334 34566888888865
No 401
>PRK06620 hypothetical protein; Validated
Probab=91.71 E-value=0.61 Score=43.56 Aligned_cols=18 Identities=17% Similarity=0.181 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
+.+++.||+|+|||....
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 348999999999997554
No 402
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.69 E-value=0.74 Score=46.08 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
..+++.+|+|+|||.....
T Consensus 52 ~~~ll~GppG~GKT~la~~ 70 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANI 70 (328)
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 4689999999999976543
No 403
>PRK07004 replicative DNA helicase; Provisional
Probab=91.69 E-value=1 Score=47.38 Aligned_cols=143 Identities=21% Similarity=0.156 Sum_probs=66.4
Q ss_pred CCEEEEcCCCchHHHHHHHH----HhcCCCeEEEec---ChHHHHHHHHHHHHHcCCceEEec-CCCCHHHHHHHHHHhh
Q 010563 54 RDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQTMQVKTKIYEDLD 125 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp----~l~~~~~~lvi~---P~~~L~~q~~~~l~~~gi~~~~~~-~~~~~~~~~~~~~~~~ 125 (507)
.=+++.|.||.|||...+-- ++..+..+++++ |...|+....... .+++...+. +..+..+...+.....
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~--~~v~~~~i~~g~l~~~e~~~~~~a~~ 291 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSV--GRLDQHRMRTGRLTDEDWPKLTHAVQ 291 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhh--cCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 34677889999999544322 223455677776 4444444332221 123222222 2233333333332222
Q ss_pred cCCCcccEEEE-CcccccChhhHHHHHhhhc-cCCccEEEEeccccccccCC-CCHH-HH----HHHHHHHHhCCCCCEE
Q 010563 126 SGKPSLRLLYV-TPELTATPGFMSKLKKIHS-RGLLNLVAIDEAHCISSWGH-DFRP-SY----RKLSSLRNYLPDVPIL 197 (507)
Q Consensus 126 ~~~~~~~il~~-tpe~~~t~~~~~~l~~~~~-~~~l~~iViDEaH~i~~~g~-~fr~-~~----~~l~~l~~~~~~~~~i 197 (507)
.-. ...+.+. +| .+..........+... .+.+++||||=.+.+..-+. .-|. .+ +.|..+...+ ++|++
T Consensus 292 ~l~-~~~l~I~d~~-~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel-~ipVi 368 (460)
T PRK07004 292 KMS-EAQLFIDETG-GLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKEL-DVPVI 368 (460)
T ss_pred HHh-cCCEEEECCC-CCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHh-CCeEE
Confidence 111 1334332 22 2222223333333332 24589999999999864321 1121 12 2233332222 78888
Q ss_pred EEee
Q 010563 198 ALTA 201 (507)
Q Consensus 198 ~lSA 201 (507)
++|-
T Consensus 369 ~lsQ 372 (460)
T PRK07004 369 ALSQ 372 (460)
T ss_pred EEec
Confidence 8875
No 404
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=91.67 E-value=0.38 Score=53.19 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=45.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHH---Hhc----CCCeEEEecChHHHHHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp---~l~----~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
.|++-|.+++.. ....++|.|+.|||||.+..-- .+. .+..+++|+.|+..+.+..+++.+
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 378999999865 3568999999999999654321 121 245789999999888888777765
No 405
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.63 E-value=1.2 Score=45.34 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~ 70 (507)
.|+..++.+|.|+|||...
T Consensus 168 kGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred cCceEEEeCCCCCChhHHH
Confidence 6889999999999999643
No 406
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=91.59 E-value=1.6 Score=41.32 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=16.3
Q ss_pred HcCC-CEEEEcCCCchHHHHHH
Q 010563 51 LSGR-DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 51 ~~g~-d~lv~apTG~GKTl~~~ 71 (507)
..|+ -+.+.++-|+|||..--
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred hcCCceEEEEecCCCchhHHHH
Confidence 3455 57789999999997765
No 407
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.58 E-value=1.2 Score=45.40 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.5
Q ss_pred CCEEEEcCCCchHHHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~ 74 (507)
+.+++.+|+|+|||+....-+
T Consensus 157 ~gvLL~GppGtGKT~lakaia 177 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVA 177 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458999999999997654433
No 408
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.58 E-value=1.5 Score=42.01 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=17.1
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 010563 51 LSGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 51 ~~g~d~lv~apTG~GKTl~~ 70 (507)
..|+.+++.+|.|+|||...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 47889999999999999643
No 409
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.56 E-value=2 Score=39.04 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=23.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT 202 (507)
+...++||||+|.+..- ....|....+..|....+.++++
T Consensus 95 ~~~kviiide~~~l~~~------~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEA------AANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred CCeEEEEEechhhhCHH------HHHHHHHHhcCCCCCeEEEEEEC
Confidence 45679999999998651 12344444444444445555544
No 410
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.55 E-value=0.32 Score=45.88 Aligned_cols=37 Identities=30% Similarity=0.288 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q 93 (507)
++|.|+.|+|||... ...+.....+.+..|+..+..+
T Consensus 1 ~vv~G~pGsGKSt~i-~~~~~~~~~~~~~~~~~~~~~~ 37 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI-KKLLKDRLVVTVISPTIELYTE 37 (234)
T ss_pred CEEEcCCCCCHHHHH-HHHHHhccccccccccceeccc
Confidence 478999999999743 3333322223334455555443
No 411
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.48 E-value=0.35 Score=50.19 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=25.2
Q ss_pred CcHHHHHHHHHHHcCCC--EEEEcCCCchHHHH
Q 010563 39 FRDKQLDAIQAVLSGRD--CFCLMPTGGGKSMC 69 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g~d--~lv~apTG~GKTl~ 69 (507)
+.+.|.+.+..+++... ++|.+|||||||.+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 46888888888887654 67889999999964
No 412
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=91.48 E-value=0.18 Score=55.02 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=45.1
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEecChHHHHHHHHHHHHHcCCceEEec
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~-~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (507)
..+++.||||+|||..+.+|.|.. .+.+||+=|--++........++.| ++..++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~Fd 200 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLLFD 200 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEEEe
Confidence 579999999999999999998875 6788899999999888777777776 454443
No 413
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.46 E-value=0.71 Score=40.41 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=24.2
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q 93 (507)
.++.+|.|+|||..|........+ .++++...+++.|
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~ 41 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQ 41 (187)
T ss_pred EEEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhh
Confidence 367799999999877543332222 5666666676654
No 414
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.44 E-value=0.99 Score=45.95 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.5
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.|+-+++++|+|+|||.....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~ 187 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQK 187 (415)
T ss_pred CCCEEEEECCCCCChhHHHHH
Confidence 678899999999999975443
No 415
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.41 E-value=0.49 Score=55.13 Aligned_cols=75 Identities=9% Similarity=0.106 Sum_probs=62.6
Q ss_pred CCccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc-cccccCCCccEEE
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVC 331 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-~~GiD~p~v~~VI 331 (507)
.+.+++|.++|+.-+.++++.+++. ++.+..++++.+.+++..+++...+|..+|||+|..+ ...++..++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3567999999999999999888753 4677889999999999999999999999999999753 3456667788877
No 416
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.40 E-value=2.5 Score=43.26 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.8
Q ss_pred CccEEEEecccccccc
Q 010563 158 LLNLVAIDEAHCISSW 173 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~ 173 (507)
.+++++||.++.+..+
T Consensus 175 ~~dlllIDDiq~l~gk 190 (408)
T COG0593 175 SLDLLLIDDIQFLAGK 190 (408)
T ss_pred ccCeeeechHhHhcCC
Confidence 4899999999998765
No 417
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.40 E-value=2.8 Score=41.50 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.4
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
.+++.||+|+|||.+..
T Consensus 40 ~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 40 HLLFAGPPGTGKTTAAL 56 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999996653
No 418
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.30 E-value=1.3 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCchHHHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~ 74 (507)
.+.+++.+|+|+|||+..-.-+
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA 238 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVA 238 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999998765444
No 419
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.15 E-value=0.44 Score=47.39 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHH--HHh---cCCCeEEEecChHHH
Q 010563 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQI--PAL---AKPGIVLVVSPLIAL 90 (507)
Q Consensus 39 ~r~~Q~~~i~~i~-~g~d~lv~apTG~GKTl~~~l--p~l---~~~~~~lvi~P~~~L 90 (507)
+.+.|.+.+..+. .++++++.+|||+|||..... ..+ ....++++|-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 5678888887654 567899999999999954321 111 223456666666555
No 420
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.13 E-value=1.7 Score=49.31 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=20.2
Q ss_pred HHHHHHHHH----c--CCCEEEEcCCCchHHHHHH
Q 010563 43 QLDAIQAVL----S--GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 43 Q~~~i~~i~----~--g~d~lv~apTG~GKTl~~~ 71 (507)
|..-+..+. + ..++++.+|+|+|||....
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHH
Confidence 555455544 2 2479999999999997653
No 421
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.05 E-value=0.71 Score=45.54 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHH--HHHHhcC---CCeEEEecChHHH
Q 010563 39 FRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCY--QIPALAK---PGIVLVVSPLIAL 90 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~-g~d~lv~apTG~GKTl~~--~lp~l~~---~~~~lvi~P~~~L 90 (507)
+.+.|.+.+..++. ++++++.+|||+|||... ++-.+.. ..+++++=...+|
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 56677777766554 568999999999999542 2222221 4567777666666
No 422
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.05 E-value=1.3 Score=40.97 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=22.6
Q ss_pred CCCEEEEcCCCchHHHHHHHHH---hcCCCeEEEecCh
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~ 87 (507)
|.-+.+.+|+|+|||...+-.+ ...+..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4557899999999995443222 2345566666653
No 423
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.99 E-value=0.84 Score=50.33 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH---h----cCCCeEEEecChHHHHHHHHHHHHH
Q 010563 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---L----AKPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~---l----~~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
..+++-|.+|+.. ....++|.|..|||||.+..--+ + ..+..+++++.++..+....+++..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4699999999853 33568999999999996654322 2 1345899999999999888888766
No 424
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.96 E-value=0.63 Score=46.79 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
++++.-+|+|+|||+..
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 58999999999999865
No 425
>PRK06749 replicative DNA helicase; Provisional
Probab=90.90 E-value=2 Score=44.63 Aligned_cols=30 Identities=13% Similarity=-0.095 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHH---hcCCCeEEEec
Q 010563 56 CFCLMPTGGGKSMCYQIPA---LAKPGIVLVVS 85 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~ 85 (507)
+++.|.||.|||...+--+ ...+..+++++
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~g~~v~~fS 221 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKSGAAVGLFS 221 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEE
Confidence 5677899999995433221 22344677776
No 426
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.90 E-value=2.2 Score=48.49 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=21.2
Q ss_pred HHHHHHHHHHc-------C-----C---CEEEEcCCCchHHHHH
Q 010563 42 KQLDAIQAVLS-------G-----R---DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 42 ~Q~~~i~~i~~-------g-----~---d~lv~apTG~GKTl~~ 70 (507)
+|.+|+..+.. | + .+++.+|||+|||...
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 77787776541 2 1 3789999999999655
No 427
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.75 E-value=2.3 Score=44.60 Aligned_cols=58 Identities=22% Similarity=0.180 Sum_probs=35.1
Q ss_pred HHHHHHHcC-----CCEEEEcCCCchHHHHHH-HHH-h-cCCCeEEEecChHHHHHHHHHHHHHcCC
Q 010563 45 DAIQAVLSG-----RDCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (507)
Q Consensus 45 ~~i~~i~~g-----~d~lv~apTG~GKTl~~~-lp~-l-~~~~~~lvi~P~~~L~~q~~~~l~~~gi 103 (507)
.-++.++.| .-+++.+++|+|||...+ +.. + ..++++++++.--. ..|...+..++|+
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~ 146 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGL 146 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCC
Confidence 346666643 457889999999995443 221 2 34467888875433 3455555555553
No 428
>PRK14701 reverse gyrase; Provisional
Probab=90.69 E-value=1.4 Score=53.26 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=54.6
Q ss_pred CCccEEEEeccchhHHHHHHHHHhC------CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccc
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~ 319 (507)
.+.++||.++|++-+.++++.|+.. ++.+..+||+++.+++..+++.+.+|+.+|||+|+.+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL 189 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFL 189 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchh
Confidence 3457999999999999999998862 46778999999999999999999999999999997643
No 429
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.55 E-value=2.4 Score=44.40 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=23.6
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeec
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT 202 (507)
+...++||||+|.+..- ....|.......|..-++.++++
T Consensus 120 ~~~kvvIIdead~lt~~------~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE------AFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred CCCEEEEEecHHhhCHH------HHHHHHHHhhcCCCCceEEEEeC
Confidence 44679999999998642 23445555555444334444444
No 430
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.53 E-value=0.46 Score=45.90 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=26.8
Q ss_pred HHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEe
Q 010563 45 DAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (507)
Q Consensus 45 ~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi 84 (507)
.++..+..|+.+++.+|+|+|||.+...-+-..+...+.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3455566789999999999999976544332334444444
No 431
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.50 E-value=0.6 Score=42.50 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=27.1
Q ss_pred CCCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHH
Q 010563 37 AQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~-g~d~lv~apTG~GKTl~~ 70 (507)
..+.+.|.+.+...+. |..+++.+|||+|||...
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 3467888888877664 678899999999999643
No 432
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.48 E-value=1.5 Score=42.96 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
+.+++++|||+|||.+..
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357789999999996543
No 433
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.47 E-value=4.3 Score=43.23 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=40.6
Q ss_pred ccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 010563 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~ 70 (507)
-+...|.+++-.+++..-|....-+.--+|-+.+++..-. -..+++++|+|.||||.+
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHH
Confidence 3567788888888888887765444444566665553222 346899999999999854
No 434
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.42 E-value=2.2 Score=48.62 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=20.3
Q ss_pred HHHHHHHHH----c--CCCEEEEcCCCchHHHHHH
Q 010563 43 QLDAIQAVL----S--GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 43 Q~~~i~~i~----~--g~d~lv~apTG~GKTl~~~ 71 (507)
|..-+..+. + ..+.++.+|+|.|||....
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 555455544 2 2579999999999996654
No 435
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=90.42 E-value=2.3 Score=45.38 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHHHHc-----CCCEEEEcCCCchHHHHH-HH--HHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHH
Q 010563 47 IQAVLS-----GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118 (507)
Q Consensus 47 i~~i~~-----g~d~lv~apTG~GKTl~~-~l--p~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~ 118 (507)
++.++. |.-+++.+|+|+|||... ++ -.+..+..+++++-. +-..+..+.+..+|+....
T Consensus 262 lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e-~~~~~i~~~~~~~g~~~~~----------- 329 (509)
T PRK09302 262 LDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE-ESRAQLIRNARSWGIDLEK----------- 329 (509)
T ss_pred HHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec-CCHHHHHHHHHHcCCChHH-----------
Confidence 455554 456788999999999533 32 234456677777643 3355666677777653210
Q ss_pred HHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 010563 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (507)
Q Consensus 119 ~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (507)
....+. ..+....|....-..+...+.......+.+++|||=.--+..
T Consensus 330 ----~~~~g~--l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 330 ----MEEKGL--LKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred ----HhhcCC--ceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 011111 223333333332233444444444445578999998876643
No 436
>PRK07773 replicative DNA helicase; Validated
Probab=90.40 E-value=1.1 Score=51.04 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=69.3
Q ss_pred HHHHHHHcC----CCEEEEcCCCchHHHHHHHHH----hcCCCeEEEecChHHHHHHHHHHHHH--cCCceEEecCC-CC
Q 010563 45 DAIQAVLSG----RDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSST-QT 113 (507)
Q Consensus 45 ~~i~~i~~g----~d~lv~apTG~GKTl~~~lp~----l~~~~~~lvi~P~~~L~~q~~~~l~~--~gi~~~~~~~~-~~ 113 (507)
..++.+..| .=+++.|++|+|||...+--+ ...+..+++++-- .-..|.++++.. .+++...+..+ ..
T Consensus 205 ~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlE-ms~~ql~~R~~s~~~~i~~~~i~~g~l~ 283 (886)
T PRK07773 205 TELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLE-MSKEQLVMRLLSAEAKIKLSDMRSGRMS 283 (886)
T ss_pred hHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecC-CCHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 344444433 236778899999995443222 2234566666521 122344444443 23322222222 22
Q ss_pred HHHHHHHHHHhhcCCCcccEEEE-CcccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCHH-HH----HHHHH
Q 010563 114 MQVKTKIYEDLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRP-SY----RKLSS 186 (507)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~il~~-tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr~-~~----~~l~~ 186 (507)
..+...+......-. ...+.+. +| .+.-..+...+.+......+++||||=.+.+..-+. +-|. .+ +.|+.
T Consensus 284 ~~~~~~~~~a~~~l~-~~~i~i~d~~-~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~ 361 (886)
T PRK07773 284 DDDWTRLARAMGEIS-EAPIFIDDTP-NLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKL 361 (886)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEECCC-CCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 222222222111110 1233332 22 122223334444444445699999999999864211 1121 11 22332
Q ss_pred HHHhCCCCCEEEEeec
Q 010563 187 LRNYLPDVPILALTAT 202 (507)
Q Consensus 187 l~~~~~~~~~i~lSAT 202 (507)
+...+ ++|++++|-.
T Consensus 362 lAkel-~vpvi~lsQL 376 (886)
T PRK07773 362 LAKEL-EVPVVALSQL 376 (886)
T ss_pred HHHHH-CCcEEEeccc
Confidence 32222 7888888764
No 437
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.35 E-value=2.4 Score=41.95 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=28.5
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
+...+++||||+.+.. .....+.......|....+.|++..+..+
T Consensus 108 ~~~kviiidead~mt~------~A~nallk~lEep~~~~~~il~~n~~~~i 152 (325)
T COG0470 108 GGYKVVIIDEADKLTE------DAANALLKTLEEPPKNTRFILITNDPSKI 152 (325)
T ss_pred CCceEEEeCcHHHHhH------HHHHHHHHHhccCCCCeEEEEEcCChhhc
Confidence 5588999999999865 23345555555556555555555544443
No 438
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=90.28 E-value=1 Score=44.61 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=27.5
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHH-HHHHHHHh--c------CCCeEEEecChH
Q 010563 46 AIQAVLSG-----RDCFCLMPTGGGKS-MCYQIPAL--A------KPGIVLVVSPLI 88 (507)
Q Consensus 46 ~i~~i~~g-----~d~lv~apTG~GKT-l~~~lp~l--~------~~~~~lvi~P~~ 88 (507)
.++.++.| .-+.+.+|+|+||| +|.++.+- . .++.+++|.---
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 35666654 34679999999999 44444321 1 246888887443
No 439
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.25 E-value=2.8 Score=42.63 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.6
Q ss_pred CEEEEcCCCchHHHHH
Q 010563 55 DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv~apTG~GKTl~~ 70 (507)
.+++.||+|+|||...
T Consensus 41 ~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 41 ALLFCGPRGVGKTTCA 56 (367)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 440
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.14 E-value=2.7 Score=39.13 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=23.6
Q ss_pred cEEEEeccccccccCC-CCHHHHHHHHHHHHhCC--CCCEEEEeecC
Q 010563 160 NLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYLP--DVPILALTATA 203 (507)
Q Consensus 160 ~~iViDEaH~i~~~g~-~fr~~~~~l~~l~~~~~--~~~~i~lSAT~ 203 (507)
-+|||||+|.+. .+. ........+..+..... ....+.++++.
T Consensus 120 ~iiviDe~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLA-IASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGG-BCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHh-hcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999998 322 12333345555555422 22234456654
No 441
>PHA00350 putative assembly protein
Probab=90.06 E-value=2.4 Score=43.28 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHH----HHHhcCCC
Q 010563 56 CFCLMPTGGGKSMCYQ----IPALAKPG 79 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~----lp~l~~~~ 79 (507)
.++.+..|+|||+..+ +|++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 4788999999997644 45555554
No 442
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.06 E-value=1.6 Score=46.96 Aligned_cols=75 Identities=24% Similarity=0.308 Sum_probs=63.3
Q ss_pred CCccEEEEeccchhHHH----HHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc-ccccccCCCccEEE
Q 010563 257 GDTCAIVYCLERTTCDE----LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~----l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GiD~p~v~~VI 331 (507)
.+.++..-++|.=-|++ +.+.|...|+.+..+.|.+..+.|++++++..+|+++++|.|-| +...|+..+.-+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 45578888998755544 55555566999999999999999999999999999999999988 57789988888888
No 443
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.00 E-value=0.48 Score=51.24 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=56.2
Q ss_pred HHHHhcCCceEEEEeCcccccccCCCccEE--------EEeCCCCCHHHHHHHhcccCCCCC---CceEEEEeccchHHH
Q 010563 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLV--------CHFNIPKSMEAFYQESGRAGRDQL---PSKSLLYYGMDDRRR 369 (507)
Q Consensus 301 ~~~f~~g~~~VLVaT~a~~~GiD~p~v~~V--------I~~~~p~s~~~y~Q~~GRagR~g~---~~~~i~~~~~~d~~~ 369 (507)
-++|++|+-.|-|-+.+++-||-+..-+.| |-+.+|+|...-+|..||+.|..+ |...+++-...-.++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 467999999999999999999988765443 457799999999999999999877 344444444444445
Q ss_pred HHHHHH
Q 010563 370 MEFILS 375 (507)
Q Consensus 370 ~~~~~~ 375 (507)
+..++.
T Consensus 930 FAS~VA 935 (1300)
T KOG1513|consen 930 FASIVA 935 (1300)
T ss_pred HHHHHH
Confidence 544443
No 444
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.97 E-value=1.9 Score=46.97 Aligned_cols=47 Identities=23% Similarity=0.332 Sum_probs=30.4
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~ 209 (507)
+..+++||||+|.++.. ....|..+....|...+++|++|-...+..
T Consensus 120 ~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~~~kIl~ 166 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTEKHKILP 166 (614)
T ss_pred CCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCCchhchH
Confidence 44689999999998652 234566666665655566676664444433
No 445
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.93 E-value=0.49 Score=47.52 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=27.1
Q ss_pred HHcCCCEEEEcCCCchHHHHH--HHHHhcCCCeEEEecChHHHH
Q 010563 50 VLSGRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIALM 91 (507)
Q Consensus 50 i~~g~d~lv~apTG~GKTl~~--~lp~l~~~~~~lvi~P~~~L~ 91 (507)
+..++++++.+|||||||... ++..+....+++.|=.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 335789999999999999532 112222345666666666653
No 446
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.82 E-value=2.2 Score=46.41 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=25.1
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (507)
+..+++||||+|.+..- ....|.......|...++.+.+|-
T Consensus 126 ~~~KVvIIdEad~Lt~~------a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTA------AFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred CCCEEEEEeChhhcCHH------HHHHHHHHHhCCCCCeEEEEEeCC
Confidence 44679999999998652 234455555554544455555553
No 447
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=89.82 E-value=1.8 Score=39.47 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=34.7
Q ss_pred HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
.+....+..++||+||+=....+|.- +. ..+..+....|.---+.+|+--.+.-
T Consensus 108 ~~~l~~~~ydlvVLDEi~~Al~~gli--~~-eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYALKYGYL--DV-EEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred HHHHhCCCCCEEEEehhhHHHHCCCc--cH-HHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 34444567999999999998888842 21 33444455556555677777655543
No 448
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=2.1 Score=43.83 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=24.7
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeEEEecCh
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~ 87 (507)
+.+++.+|.|+|||+..-.-+.+......-|+|.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhhcceEeeccHH
Confidence 4678999999999986655555555555666665
No 449
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.56 E-value=5.9 Score=35.52 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=33.1
Q ss_pred hhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 010563 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (507)
Q Consensus 152 ~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (507)
+....+..++||+||+=....+|.--. ..+..+....|..-=+.+|+.-.+.
T Consensus 91 ~~l~~~~~DlvVLDEi~~A~~~gli~~---~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 91 EMLADPELDLVLLDELTYALKYGYLDV---EEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHhcCCCCEEEehhhHHHHHCCCcCH---HHHHHHHHhCCCCCEEEEECCCCCH
Confidence 333456789999999998888773211 2344555555655556777765554
No 450
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.53 E-value=0.53 Score=47.15 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=25.0
Q ss_pred HcCCCEEEEcCCCchHHHH--HHHHHhcCCCeEEEecChHHH
Q 010563 51 LSGRDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIAL 90 (507)
Q Consensus 51 ~~g~d~lv~apTG~GKTl~--~~lp~l~~~~~~lvi~P~~~L 90 (507)
..++++++.+|||+|||.. +++..+....+++++=-+.+|
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 3568999999999999953 222223334566555444444
No 451
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.51 E-value=1.9 Score=46.39 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=15.2
Q ss_pred CEEEEcCCCchHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp 73 (507)
-.++.||.|+|||.+..+-
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999766443
No 452
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=89.45 E-value=0.74 Score=41.76 Aligned_cols=34 Identities=29% Similarity=0.167 Sum_probs=23.1
Q ss_pred EEEEcCCCchHHHHHHHHH---hcCCCeEEEecChHH
Q 010563 56 CFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~~~ 89 (507)
.++.+|.+||||.-.+--+ ...+.+++|..|.+.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 5789999999997543322 134667777777653
No 453
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.39 E-value=2.4 Score=42.01 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=33.9
Q ss_pred CCcHHHHHHHH-HHHcCCCEEEEcCCCchHHHHH--HHHHhcCCCeEEEecChHHH
Q 010563 38 QFRDKQLDAIQ-AVLSGRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIAL 90 (507)
Q Consensus 38 ~~r~~Q~~~i~-~i~~g~d~lv~apTG~GKTl~~--~lp~l~~~~~~lvi~P~~~L 90 (507)
.+.+.|..-+. ++..+++++++++||+|||..- ++..+-...+.+.+=-+.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccc
Confidence 46677776554 4456789999999999999532 22333344556665555444
No 454
>CHL00195 ycf46 Ycf46; Provisional
Probab=89.36 E-value=2.5 Score=44.62 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
+.+++.+|+|+|||+..-
T Consensus 260 kGILL~GPpGTGKTllAk 277 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAK 277 (489)
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999997653
No 455
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=89.35 E-value=1.9 Score=38.15 Aligned_cols=53 Identities=28% Similarity=0.310 Sum_probs=32.2
Q ss_pred HhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 010563 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (507)
Q Consensus 151 ~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (507)
......+..++||+||+=....+|.--. ..+..+....|...-+.+|+--.+.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~---~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDV---EEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCH---HHHHHHHHcCCCCCEEEEECCCCCH
Confidence 3344456789999999998888774222 3444455555554455555554443
No 456
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=89.33 E-value=0.78 Score=54.30 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=45.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHH---Hhc---CCCeEEEecChHHHHHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALA---KPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp---~l~---~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
++++-|.+||.. .+++++|.|.-|||||.+..-- .+. ....++||+=|++-+.+..+++..
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 368999999974 6889999999999999765422 222 234589999999888776655544
No 457
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=4.5 Score=38.52 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=40.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHH
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q 93 (507)
.+.+.+-.++-.+.|+++--..-+.|.---.+ -+---+.+++-+|+|+|||+|+-..+ .+..-+.+-+--.+|++.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~l-gidppkgvllygppgtgktl~arava-nrtdacfirvigselvqk 250 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNL-GIDPPKGVLLYGPPGTGKTLCARAVA-NRTDACFIRVIGSELVQK 250 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhc-CCCCCCceEEeCCCCCchhHHHHHHh-cccCceEEeehhHHHHHH
Confidence 34555556666666666544444444221111 00012579999999999999864333 233333443434466543
No 458
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.13 E-value=3.9 Score=43.60 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=24.8
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (507)
+...++||||||.+.. .....|.......|..-.+.|++|-+
T Consensus 116 ~~~KVvIIDEad~Lt~------~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 116 ARFKIFIIDEVHMLTK------EAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred CCeEEEEEECcccCCH------HHHHHHHHHHhhcCCceEEEEEECCh
Confidence 4578999999999865 22344545555545433444444543
No 459
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.04 E-value=3.1 Score=47.21 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=22.0
Q ss_pred HHHHHHHHHH----cC--CCEEEEcCCCchHHHHHH
Q 010563 42 KQLDAIQAVL----SG--RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 42 ~Q~~~i~~i~----~g--~d~lv~apTG~GKTl~~~ 71 (507)
.|.+.|..+. ++ .++++++|+|+|||...-
T Consensus 191 Gr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 191 GRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 3666666654 22 489999999999997653
No 460
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.03 E-value=2.9 Score=46.13 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=28.3
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCC
Q 010563 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAA 204 (507)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~ 204 (507)
.=++|+|+.|.+.+---+ ..+..+.+..| +..+++.|=+-+
T Consensus 130 pl~LVlDDyHli~~~~l~-----~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALH-----EALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHH-----HHHHHHHHhCCCCeEEEEEeccCC
Confidence 458999999999874321 45666777666 666777776644
No 461
>PF05729 NACHT: NACHT domain
Probab=88.92 E-value=4.7 Score=35.13 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=23.9
Q ss_pred cEEEEeccccccccCCC--CHHHHHHHHHHHHh--CCCCCEEEEeec
Q 010563 160 NLVAIDEAHCISSWGHD--FRPSYRKLSSLRNY--LPDVPILALTAT 202 (507)
Q Consensus 160 ~~iViDEaH~i~~~g~~--fr~~~~~l~~l~~~--~~~~~~i~lSAT 202 (507)
-++|||-.|.+..-... -.+....+..+... .++.+++..|.+
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 46899999998763211 11223345555554 556665555443
No 462
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.91 E-value=1.9 Score=40.24 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=25.4
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHH-HHHH--hcCCCeEEEec
Q 010563 46 AIQAVLS-----GRDCFCLMPTGGGKSMCY-QIPA--LAKPGIVLVVS 85 (507)
Q Consensus 46 ~i~~i~~-----g~d~lv~apTG~GKTl~~-~lp~--l~~~~~~lvi~ 85 (507)
.++.++. |.-+++.+++|+|||... ++.. ...+..++++.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3555554 345789999999999543 3322 23456777773
No 463
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=88.90 E-value=1.3 Score=44.45 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=26.1
Q ss_pred HHHHHcC-----CCEEEEcCCCchHH-HHHHHHHhc--------CCCeEEEecCh
Q 010563 47 IQAVLSG-----RDCFCLMPTGGGKS-MCYQIPALA--------KPGIVLVVSPL 87 (507)
Q Consensus 47 i~~i~~g-----~d~lv~apTG~GKT-l~~~lp~l~--------~~~~~lvi~P~ 87 (507)
++.++.| .-+.+.+|+|+||| +|.++.+-. ..+++++|..-
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 4555554 34679999999999 454443311 13678888753
No 464
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=88.76 E-value=5 Score=40.79 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (507)
+...++||||+|.+.. .....|.+..+..|...++++++.-+.
T Consensus 140 ~~~kVviIDead~m~~------~aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 140 GGWRVVIVDTADEMNA------NAANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred CCCEEEEEechHhcCH------HHHHHHHHHHhcCCCCeEEEEEECCch
Confidence 4577999999998754 223455555555555555555554443
No 465
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=88.74 E-value=2.3 Score=45.04 Aligned_cols=85 Identities=24% Similarity=0.227 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCCCCcH----HHHHHHHHHH--cCCCEEEEcCCCchHHHHHHH--HHh-------cCCCeEEEecCh
Q 010563 23 KEALVKLLRWHFGHAQFRD----KQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI--PAL-------AKPGIVLVVSPL 87 (507)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~----~Q~~~i~~i~--~g~d~lv~apTG~GKTl~~~l--p~l-------~~~~~~lvi~P~ 87 (507)
.+-|+..|.++ --.++|. +|.+==+.+. .++-++|++..|||||.+++- +-| ...+.+||+.|.
T Consensus 191 dEvL~~~Lek~-ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN 269 (747)
T COG3973 191 DEVLQRVLEKN-SSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPN 269 (747)
T ss_pred HHHHHHHHHhc-cchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCc
Confidence 34466777774 2234443 3333222232 345588999999999976542 111 124459999999
Q ss_pred HHHHHHHHHHHHHcCCceEEe
Q 010563 88 IALMENQVIGLKEKGIAGEFL 108 (507)
Q Consensus 88 ~~L~~q~~~~l~~~gi~~~~~ 108 (507)
+-++.=....|-++|......
T Consensus 270 ~vFleYis~VLPeLGe~~V~q 290 (747)
T COG3973 270 RVFLEYISRVLPELGEEGVVQ 290 (747)
T ss_pred HHHHHHHHHhchhhccCceee
Confidence 999988888888888765543
No 466
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=88.71 E-value=9.6 Score=39.98 Aligned_cols=122 Identities=21% Similarity=0.179 Sum_probs=88.3
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhcc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~ 156 (507)
++.+++|.+=|+-+++|..+.|...|+++.++|+....-++.++..++..|. ++++++-. .|..-.+.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~--~DvLVGIN----------LLREGLDi 512 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVGIN----------LLREGLDL 512 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC--ccEEEeeh----------hhhccCCC
Confidence 4779999999999999999999999999999999999999999999999997 77766632 23333344
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHH
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~ 212 (507)
..+++|+|=+|+.-.-. ..-|..++.+++..... +-.+|+..-..+..+...+.
T Consensus 513 PEVsLVAIlDADKeGFL-Rse~SLIQtIGRAARN~-~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 513 PEVSLVAILDADKEGFL-RSERSLIQTIGRAARNV-NGKVILYADKITDSMQKAID 566 (663)
T ss_pred cceeEEEEeecCccccc-cccchHHHHHHHHhhcc-CCeEEEEchhhhHHHHHHHH
Confidence 55889999889873211 11234444555444332 45577776777766655443
No 467
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=88.63 E-value=0.31 Score=53.24 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=42.8
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcC-CCeEEEecChHHHHHHHHHHHHH-cCCceEEec
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~-~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~ 109 (507)
..+++.||||+|||..+.+|.+.. ++.+||+=|--++........++ .|-++..++
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~fd 233 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRFE 233 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 469999999999999999998765 66788888999997665555433 455555444
No 468
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=88.43 E-value=0.75 Score=46.18 Aligned_cols=31 Identities=19% Similarity=-0.052 Sum_probs=20.5
Q ss_pred CEEEEcCCCchHHHHHHHHHhcCCCeEEEec
Q 010563 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~ 85 (507)
-+++.+|+|+|||+..-..+-..+...++++
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 4788999999999866554444444444444
No 469
>PRK09087 hypothetical protein; Validated
Probab=88.25 E-value=2.2 Score=40.14 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.2
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
-+++.+|+|+|||...+
T Consensus 46 ~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 46 VVVLAGPVGSGKTHLAS 62 (226)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999996544
No 470
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.19 E-value=2.6 Score=47.84 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=16.0
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
+++++.+|+|.|||.....
T Consensus 201 ~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 5899999999999976543
No 471
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.11 E-value=0.76 Score=44.50 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=12.3
Q ss_pred EEEEcCCCchHHHH
Q 010563 56 CFCLMPTGGGKSMC 69 (507)
Q Consensus 56 ~lv~apTG~GKTl~ 69 (507)
++|.+|||||||.+
T Consensus 128 ILVTGpTGSGKSTT 141 (353)
T COG2805 128 ILVTGPTGSGKSTT 141 (353)
T ss_pred EEEeCCCCCcHHHH
Confidence 78999999999954
No 472
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=88.09 E-value=2.2 Score=40.52 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCceeEecCCCCHHHHHHHHHHHhcCC----ceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccC-CCCCCc
Q 010563 282 GISCAAYHAGLNDKARSSVLDDWISSR----KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG-RDQLPS 356 (507)
Q Consensus 282 g~~~~~~h~~l~~~~R~~~~~~f~~g~----~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRag-R~g~~~ 356 (507)
++.+...+++.+... -.|.++. ..|+|.-+.+++|+-+++........-++...++.|+.-..| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 466666665544322 3344443 789999999999999999999999999999999999987777 788788
Q ss_pred eEEEEeccchHHHHHHHHH
Q 010563 357 KSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 357 ~~i~~~~~~d~~~~~~~~~ 375 (507)
.|-+|.+++=...+..+..
T Consensus 185 l~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ceEEecCHHHHHHHHHHHH
Confidence 8999987766666665554
No 473
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.04 E-value=1.1 Score=43.21 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=24.3
Q ss_pred CcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHH
Q 010563 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~ 70 (507)
+.+.|.+.+..++.. .-+++.+|||+|||...
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 457788888776643 34789999999999643
No 474
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=88.04 E-value=3.8 Score=38.40 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=25.0
Q ss_pred HHHHHc-----CCCEEEEcCCCchHHHH-HHHHH--hcCCCeEEEecC
Q 010563 47 IQAVLS-----GRDCFCLMPTGGGKSMC-YQIPA--LAKPGIVLVVSP 86 (507)
Q Consensus 47 i~~i~~-----g~d~lv~apTG~GKTl~-~~lp~--l~~~~~~lvi~P 86 (507)
++.++. |.-+++.+|+|+|||.. .++.. +..+..++++.-
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 555554 45678999999999944 33322 234566666653
No 475
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=87.87 E-value=1.3 Score=46.22 Aligned_cols=54 Identities=28% Similarity=0.335 Sum_probs=46.6
Q ss_pred cEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc
Q 010563 260 CAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (507)
Q Consensus 260 ~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (507)
-+||+++||+-+.++..+|... ++.+..+.|||+....++++++ .-+|+|||+-
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPG 322 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPG 322 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecch
Confidence 3899999999999999999753 8899999999998887777766 5679999963
No 476
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.79 E-value=6.7 Score=41.83 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=30.0
Q ss_pred ccEEEEeccccccc---cCCCCHHHHHH-HHHHHHhC--------CCCCEEEEeecCChhhHHHHHH
Q 010563 159 LNLVAIDEAHCISS---WGHDFRPSYRK-LSSLRNYL--------PDVPILALTATAAPKVQKDVME 213 (507)
Q Consensus 159 l~~iViDEaH~i~~---~g~~fr~~~~~-l~~l~~~~--------~~~~~i~lSAT~~~~~~~~i~~ 213 (507)
-.+++|||.+.|.. |+ -|.--++ +..+.... .+.+++...||-.|...+--.+
T Consensus 283 PcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR 347 (802)
T KOG0733|consen 283 PCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR 347 (802)
T ss_pred CeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh
Confidence 56899999999864 32 1111111 22233221 1468999999977665543333
No 477
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=87.78 E-value=4.9 Score=34.28 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.1
Q ss_pred EEEEcCCCchHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~ 71 (507)
++++||+|+|||....
T Consensus 2 ii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999996543
No 478
>PRK12608 transcription termination factor Rho; Provisional
Probab=87.72 E-value=2.2 Score=43.09 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=23.3
Q ss_pred HHHHHHHHHHH---cCCCEEEEcCCCchHHHHH
Q 010563 41 DKQLDAIQAVL---SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 41 ~~Q~~~i~~i~---~g~d~lv~apTG~GKTl~~ 70 (507)
+.-..+|+.+. .|+.+++.+|.|+|||...
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl 150 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLL 150 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHH
Confidence 34445777765 7889999999999999654
No 479
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=87.46 E-value=3.2 Score=37.94 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=49.5
Q ss_pred CCccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc-----ccc-cccCCC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGM-GIDRKD 326 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~~~-GiD~p~ 326 (507)
.+.++||.++++..+.+.+..+... ++.+..++|+.+..++.... .+..+|+|+|.. +.. -.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4567999999999988887776543 67788899998876554332 266789999952 212 245566
Q ss_pred ccEEE
Q 010563 327 VRLVC 331 (507)
Q Consensus 327 v~~VI 331 (507)
++++|
T Consensus 144 l~~lI 148 (203)
T cd00268 144 VKYLV 148 (203)
T ss_pred CCEEE
Confidence 66666
No 480
>PRK10436 hypothetical protein; Provisional
Probab=87.43 E-value=1.1 Score=46.95 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=24.1
Q ss_pred CcHHHHHHHHHHHcC--CCEEEEcCCCchHHHH
Q 010563 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMC 69 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~ 69 (507)
+.+.|.+.+..++.. .-+++.+|||||||.+
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 457788888777643 3578999999999975
No 481
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.28 E-value=0.62 Score=45.16 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=25.9
Q ss_pred cCCCEEEEcCCCchHHHHH--HHHHhcCC-CeEEEecChHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY--QIPALAKP-GIVLVVSPLIAL 90 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~--~lp~l~~~-~~~lvi~P~~~L 90 (507)
.+..+++.||||||||... ++..+... .+++++-...++
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4578999999999999543 23333345 677777666555
No 482
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=87.26 E-value=3 Score=46.40 Aligned_cols=96 Identities=23% Similarity=0.287 Sum_probs=56.1
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHH---HHHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 010563 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (507)
Q Consensus 46 ~i~~i~~------g~d~lv~apTG~GKTl~~~---lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (507)
.++.++. |.-+.+.+|+|+|||...+ ..+...++.+++|..--.+... .++++|+...
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~---~A~~lGvDl~---------- 113 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD---YAKKLGVDTD---------- 113 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH---HHHHcCCChh----------
Confidence 4566665 2457899999999995432 2334567788888876666532 4555555321
Q ss_pred HHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
++++..|... ...+..+......+.+++||||-+--+.
T Consensus 114 ---------------~llv~~~~~~--E~~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 114 ---------------SLLVSQPDTG--EQALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred ---------------HeEEecCCCH--HHHHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 1223333211 1123333344444568999999987665
No 483
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.25 E-value=7.7 Score=42.52 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=37.1
Q ss_pred cccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHH
Q 010563 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 11 ~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~-g~d~lv~apTG~GKTl~~ 70 (507)
.-++..|++++-.++....+....+..=-.| +.+..=++ .-.+++-+|+|+|||+.+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hp---eLfssglrkRSGILLYGPPGTGKTLlA 722 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHP---ELFSSGLRKRSGILLYGPPGTGKTLLA 722 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccCh---hhhhccccccceeEEECCCCCchHHHH
Confidence 3467889999988888887777544421100 12222223 235889999999999865
No 484
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.20 E-value=1.4 Score=50.03 Aligned_cols=30 Identities=37% Similarity=0.337 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHc-------C-----C---CEEEEcCCCchHHHHH
Q 010563 41 DKQLDAIQAVLS-------G-----R---DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 41 ~~Q~~~i~~i~~-------g-----~---d~lv~apTG~GKTl~~ 70 (507)
.+|.+|+..+.. | + .+++.+|||+|||...
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELT 556 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHH
Confidence 378888877642 1 1 3689999999999654
No 485
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=87.16 E-value=9 Score=37.68 Aligned_cols=145 Identities=21% Similarity=0.197 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHH--HHh-----------cCCCeEEEecChHHHHHHHHHHHHH----c
Q 010563 40 RDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQI--PAL-----------AKPGIVLVVSPLIALMENQVIGLKE----K 101 (507)
Q Consensus 40 r~~Q~~~i~~i~-~g~d~lv~apTG~GKTl~~~l--p~l-----------~~~~~~lvi~P~~~L~~q~~~~l~~----~ 101 (507)
|..|-+.|+.++ .|-.+|+-++.|.|||+..+. .++ ..++++++|+--..- ++.+++++. +
T Consensus 75 rs~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~r-e~~L~Rl~~v~a~m 153 (402)
T COG3598 75 RSNSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYR-EDILERLEPVRARM 153 (402)
T ss_pred cccChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccCh-HHHHHHHHHHHHHc
Confidence 445666676655 455678889999999965432 222 136778887632211 233333333 3
Q ss_pred CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcc-cccChhhHHHHHhhhccCCccEEEEeccccccccCCCCH--
Q 010563 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR-- 178 (507)
Q Consensus 102 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe-~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr-- 178 (507)
|+..+ ....+.-.-.+| .+++ -+..|.+..++.........+++|||=.-.+..-....+
T Consensus 154 gLsPa---------dvrn~dltd~~G--------aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vq 216 (402)
T COG3598 154 GLSPA---------DVRNMDLTDVSG--------AADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQ 216 (402)
T ss_pred CCChH---------hhhheecccccc--------CCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcCCccchhHH
Confidence 43221 111110000011 2333 223455666666655566689999998766654221111
Q ss_pred --HHHHHHHHHHHhCCCCCEEEEeecC
Q 010563 179 --PSYRKLSSLRNYLPDVPILALTATA 203 (507)
Q Consensus 179 --~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (507)
.-.....++.... ...+|.+.-|-
T Consensus 217 v~~fi~~~rkla~~l-~caIiy~hHts 242 (402)
T COG3598 217 VKEFIKKTRKLARNL-ECAIIYIHHTS 242 (402)
T ss_pred HHHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 1112223333322 55677777664
No 486
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.09 E-value=1.7 Score=45.88 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=60.9
Q ss_pred ccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccc-------cc-cCCCccEE
Q 010563 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM-------GI-DRKDVRLV 330 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~-------Gi-D~p~v~~V 330 (507)
+.+||.+++++-+.+....|...|+.+..++++.+..++..++.....|+.+++++|.-.-. .+ ...++.+|
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~i 131 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLI 131 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEE
Confidence 46899999999999999999999999999999999999999999999999999999964211 12 34567776
Q ss_pred E
Q 010563 331 C 331 (507)
Q Consensus 331 I 331 (507)
|
T Consensus 132 V 132 (470)
T TIGR00614 132 A 132 (470)
T ss_pred E
Confidence 6
No 487
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=87.06 E-value=1.5 Score=48.39 Aligned_cols=28 Identities=39% Similarity=0.476 Sum_probs=21.3
Q ss_pred HHHHHHHHHHc-------C--------CCEEEEcCCCchHHHH
Q 010563 42 KQLDAIQAVLS-------G--------RDCFCLMPTGGGKSMC 69 (507)
Q Consensus 42 ~Q~~~i~~i~~-------g--------~d~lv~apTG~GKTl~ 69 (507)
.|.+|+.++.. | ..+++.+|||.|||..
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTEL 537 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTEL 537 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHH
Confidence 68888887752 2 2578899999999943
No 488
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=87.03 E-value=13 Score=35.21 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHh---------------cCCCeEEEec
Q 010563 56 CFCLMPTGGGKSMCYQIPAL---------------AKPGIVLVVS 85 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~l---------------~~~~~~lvi~ 85 (507)
.++.+|.|+|||...+--++ ..++++++++
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 57899999999954432222 1356788887
No 489
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=87.00 E-value=2.9 Score=41.87 Aligned_cols=50 Identities=8% Similarity=0.028 Sum_probs=29.8
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHH
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i 211 (507)
.+..+++||||||.+..- ....|.+..+..|+.-++.|+++-+..+...|
T Consensus 108 ~~~~kvviI~~a~~~~~~------a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS------AANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred ccCceEEEeehHhhhCHH------HHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 455789999999998652 22445555555455445666666444444433
No 490
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=86.89 E-value=4.5 Score=39.09 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
+.+++.+++|+|||+.+
T Consensus 220 KGVIlyG~PGTGKTLLA 236 (440)
T KOG0726|consen 220 KGVILYGEPGTGKTLLA 236 (440)
T ss_pred CeeEEeCCCCCchhHHH
Confidence 67999999999999754
No 491
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.74 E-value=2.5 Score=42.61 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~ 70 (507)
+..+++.+|||+|||...
T Consensus 122 ~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999653
No 492
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.61 E-value=0.31 Score=51.08 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=28.6
Q ss_pred cCCceEEEEeCcccccccCCCc---cEEE---EeCCCCC----HHHHHHHhcccCC
Q 010563 306 SSRKQVVVATVAFGMGIDRKDV---RLVC---HFNIPKS----MEAFYQESGRAGR 351 (507)
Q Consensus 306 ~g~~~VLVaT~a~~~GiD~p~v---~~VI---~~~~p~s----~~~y~Q~~GRagR 351 (507)
.+.+++|.+.+.+..|.|+-+. |.+. ...-.+. ...=.|-+||..|
T Consensus 328 dnpir~if~vd~lnegwdvlnlfdmr~i~rrk~~an~kk~~~~TikekQLIGRGaR 383 (812)
T COG3421 328 DNPIRVIFSVDKLNEGWDVLNLFDMRGIKRRKKMANDKKLAAATIKEKQLIGRGAR 383 (812)
T ss_pred CCCeEEEEEeecccccchhhhhhhHHHHHHHHhhhcccchhhhhhhHHHHHhccce
Confidence 4678999999999999886432 1111 0001112 3344788999888
No 493
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=86.51 E-value=6.4 Score=37.50 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCC-CeEEEecChHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAKP-GIVLVVSPLIALMEN 93 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~~-~~~lvi~P~~~L~~q 93 (507)
++++..+|+|+|||+.+ -++... ...++.+-..+|+-.
T Consensus 152 knVLFyGppGTGKTm~A--kalane~kvp~l~vkat~liGe 190 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA--KALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred ceeEEECCCCccHHHHH--HHHhcccCCceEEechHHHHHH
Confidence 78999999999999743 344433 334555555566544
No 494
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.51 E-value=3.8 Score=44.67 Aligned_cols=19 Identities=32% Similarity=0.315 Sum_probs=15.2
Q ss_pred CEEEEcCCCchHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp 73 (507)
-+++.+|+|+|||..+.+.
T Consensus 112 illL~GP~GsGKTTl~~~l 130 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKIL 130 (637)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3889999999999765443
No 495
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=86.49 E-value=12 Score=38.06 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHH
Q 010563 53 GRDCFCLMPTGGGKSMC 69 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~ 69 (507)
.+.+.+.||.|.|||+.
T Consensus 62 ~~GlYl~G~vG~GKT~L 78 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML 78 (362)
T ss_pred CceEEEECCCCCchhHH
Confidence 35689999999999964
No 496
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=86.41 E-value=1.4 Score=51.58 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=57.0
Q ss_pred CccEEEEeccchhHHHHHHHHHhC----CCce---eEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccc-ccc-CC-Cc
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG----GISC---AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM-GID-RK-DV 327 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~----g~~~---~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~-GiD-~p-~v 327 (507)
+.+++|.++|++-+.++++.+++. |+.+ ..|||+++..++....+.+.+|..+|||+|...-. .++ +. .+
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~ 200 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKF 200 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCC
Confidence 467999999999999998888753 4433 36899999999999999999999999999976322 111 11 56
Q ss_pred cEEEE
Q 010563 328 RLVCH 332 (507)
Q Consensus 328 ~~VI~ 332 (507)
+++|.
T Consensus 201 ~~iVv 205 (1171)
T TIGR01054 201 DFIFV 205 (1171)
T ss_pred CEEEE
Confidence 67664
No 497
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=86.14 E-value=8.5 Score=42.38 Aligned_cols=21 Identities=24% Similarity=0.418 Sum_probs=16.5
Q ss_pred CCEEEEcCCCchHHHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~ 74 (507)
+.+++.+|+|+|||.....-+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a 206 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIA 206 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 469999999999997654433
No 498
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=86.03 E-value=13 Score=33.89 Aligned_cols=151 Identities=18% Similarity=0.215 Sum_probs=76.5
Q ss_pred CEEEEcCCCchHHHHHH--HHHhcCCCeEEEecChHHHHHHHHHHHHH-cCCceEEecCCC----CHHHHHHHHHHhhcC
Q 010563 55 DCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQ----TMQVKTKIYEDLDSG 127 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~--lp~l~~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~----~~~~~~~~~~~~~~~ 127 (507)
-+-+.+|.|||||.... +..+...-.+-||.-=. +-..-.+.+++ .|.++..+..+. ...........+...
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di-~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDI-YTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEecee-echhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 35577899999995432 34454443444443222 22344567777 888887776662 222333334444444
Q ss_pred CCcccEEEECcc--cccC--hhhHHHH--------------Hh-hhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 010563 128 KPSLRLLYVTPE--LTAT--PGFMSKL--------------KK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (507)
Q Consensus 128 ~~~~~il~~tpe--~~~t--~~~~~~l--------------~~-~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (507)
.+..+++++-.- .+++ |..-..+ .+ ..-..+-+++||--.+....-|.|..- --...+
T Consensus 94 ~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~aDllVInK~DLa~~v~~dlev---m~~da~ 170 (202)
T COG0378 94 FPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLAPYVGADLEV---MARDAK 170 (202)
T ss_pred CCcCCEEEEecCcceecccCcchhhceEEEEEECCCCCCCcccCCCceeEeeEEEEehHHhHHHhCccHHH---HHHHHH
Confidence 444666654221 1111 1111000 00 000001256666666666665543221 123455
Q ss_pred HhCCCCCEEEEeecCChhhHH
Q 010563 189 NYLPDVPILALTATAAPKVQK 209 (507)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~~~ 209 (507)
...|+.|++.+++.-.+....
T Consensus 171 ~~np~~~ii~~n~ktg~G~~~ 191 (202)
T COG0378 171 EVNPEAPIIFTNLKTGEGLDE 191 (202)
T ss_pred HhCCCCCEEEEeCCCCcCHHH
Confidence 667899999999987765543
No 499
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=86.02 E-value=2 Score=44.02 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCC--CCcHHHHH----H-HHHHHcCCCEEEEcCCCchHHHHHH
Q 010563 24 EALVKLLRWHFGHA--QFRDKQLD----A-IQAVLSGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 24 ~~l~~~l~~~fg~~--~~r~~Q~~----~-i~~i~~g~d~lv~apTG~GKTl~~~ 71 (507)
+++.+.|-+..|+. .+...|+- . ++.+-++.+++..+|+|+|||..|.
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 45555555557986 34432222 1 2555678899999999999996664
No 500
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.99 E-value=1.3 Score=46.93 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 39 FRDKQLDAIQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
+.+.|.+.+..++.... +++.+|||+|||...
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL 259 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL 259 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 46888888888776433 679999999999653
Done!