Query 010563
Match_columns 507
No_of_seqs 392 out of 2927
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 09:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 8.1E-76 2.8E-80 628.2 43.7 407 18-439 24-434 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 6.8E-75 2.3E-79 614.9 45.1 405 15-439 2-406 (523)
3 2db3_A ATP-dependent RNA helic 100.0 4E-52 1.4E-56 431.9 35.8 334 14-365 55-407 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 4.1E-52 1.4E-56 447.4 29.7 344 21-377 27-410 (579)
5 3i5x_A ATP-dependent RNA helic 100.0 3.5E-51 1.2E-55 439.2 32.8 343 22-377 79-461 (563)
6 2i4i_A ATP-dependent RNA helic 100.0 1.7E-50 5.9E-55 417.4 34.0 345 15-376 15-394 (417)
7 2j0s_A ATP-dependent RNA helic 100.0 8.9E-50 3E-54 411.4 39.0 346 13-377 35-395 (410)
8 1s2m_A Putative ATP-dependent 100.0 1.8E-49 6.3E-54 407.6 35.3 345 14-378 20-378 (400)
9 1xti_A Probable ATP-dependent 100.0 5.3E-49 1.8E-53 402.6 36.9 343 15-375 8-368 (391)
10 3eiq_A Eukaryotic initiation f 100.0 4.5E-49 1.5E-53 406.2 32.6 346 14-377 39-399 (414)
11 1hv8_A Putative ATP-dependent 100.0 7.1E-48 2.4E-52 390.3 38.1 340 15-377 6-357 (367)
12 3fht_A ATP-dependent RNA helic 100.0 2.9E-48 1E-52 399.7 35.6 347 9-377 19-392 (412)
13 3pey_A ATP-dependent RNA helic 100.0 3.2E-48 1.1E-52 396.8 35.0 339 14-375 4-367 (395)
14 2z0m_A 337AA long hypothetical 100.0 4.6E-48 1.6E-52 387.3 32.0 326 22-375 1-332 (337)
15 1fuu_A Yeast initiation factor 100.0 1.1E-49 3.6E-54 408.1 20.0 344 12-375 18-376 (394)
16 3oiy_A Reverse gyrase helicase 100.0 3.4E-47 1.2E-51 392.8 28.7 328 23-375 7-373 (414)
17 3fmp_B ATP-dependent RNA helic 100.0 5.1E-48 1.7E-52 406.5 14.5 340 12-373 89-455 (479)
18 4gl2_A Interferon-induced heli 100.0 1.2E-47 4E-52 422.2 17.4 377 38-425 7-586 (699)
19 4a4z_A Antiviral helicase SKI2 100.0 4.4E-45 1.5E-49 410.6 31.7 388 24-438 26-576 (997)
20 3fho_A ATP-dependent RNA helic 100.0 2E-46 6.8E-51 396.5 14.1 339 17-375 121-481 (508)
21 2ykg_A Probable ATP-dependent 100.0 3.5E-45 1.2E-49 402.2 23.4 327 28-371 4-522 (696)
22 2p6r_A Afuhel308 helicase; pro 100.0 1.6E-42 5.3E-47 380.9 27.9 328 17-368 3-391 (702)
23 4a2p_A RIG-I, retinoic acid in 100.0 2.1E-42 7.1E-47 370.1 27.4 320 35-370 4-513 (556)
24 2va8_A SSO2462, SKI2-type heli 100.0 1.5E-41 5E-46 374.2 34.6 324 16-366 9-409 (715)
25 3l9o_A ATP-dependent RNA helic 100.0 1.4E-42 4.9E-47 393.4 25.6 340 16-378 163-611 (1108)
26 4a2w_A RIG-I, retinoic acid in 100.0 2.7E-42 9.4E-47 388.0 27.4 318 33-369 243-753 (936)
27 2zj8_A DNA helicase, putative 100.0 7.6E-42 2.6E-46 376.4 29.0 326 17-368 3-390 (720)
28 4ddu_A Reverse gyrase; topoiso 100.0 2.6E-41 8.8E-46 383.1 30.8 291 24-337 65-388 (1104)
29 3tbk_A RIG-I helicase domain; 100.0 2.1E-41 7E-46 362.0 27.0 316 38-371 4-513 (555)
30 1wp9_A ATP-dependent RNA helic 100.0 4.4E-40 1.5E-44 344.9 33.8 314 38-369 9-479 (494)
31 2xgj_A ATP-dependent RNA helic 100.0 1.3E-40 4.5E-45 374.4 31.6 322 31-377 80-512 (1010)
32 4a2q_A RIG-I, retinoic acid in 100.0 8E-41 2.7E-45 371.9 28.9 320 31-369 241-753 (797)
33 1gm5_A RECG; helicase, replica 100.0 9.5E-42 3.2E-46 372.5 20.9 316 24-364 355-696 (780)
34 2eyq_A TRCF, transcription-rep 100.0 1.5E-38 5.3E-43 362.5 38.7 323 18-366 584-923 (1151)
35 1tf5_A Preprotein translocase 100.0 1.2E-38 4.1E-43 342.0 34.9 322 29-367 75-547 (844)
36 1gku_B Reverse gyrase, TOP-RG; 100.0 1.3E-40 4.5E-45 377.4 19.4 323 24-376 44-465 (1054)
37 4f92_B U5 small nuclear ribonu 100.0 3E-38 1E-42 369.9 33.2 336 26-378 915-1321(1724)
38 2oca_A DAR protein, ATP-depend 100.0 2.3E-39 8E-44 343.2 16.7 301 38-365 113-455 (510)
39 2jlq_A Serine protease subunit 100.0 5.8E-39 2E-43 334.1 15.3 284 35-364 1-310 (451)
40 2fwr_A DNA repair protein RAD2 100.0 3.3E-38 1.1E-42 331.1 20.4 288 38-361 93-448 (472)
41 4f92_B U5 small nuclear ribonu 100.0 2.9E-38 1E-42 369.9 21.6 336 26-378 66-486 (1724)
42 2wv9_A Flavivirin protease NS2 100.0 3.8E-39 1.3E-43 347.9 9.6 284 38-370 215-541 (673)
43 1yks_A Genome polyprotein [con 100.0 1.1E-38 3.7E-43 330.7 10.7 276 49-373 4-310 (440)
44 2whx_A Serine protease/ntpase/ 100.0 2.2E-38 7.4E-43 339.9 13.0 307 20-374 155-490 (618)
45 1nkt_A Preprotein translocase 100.0 3.2E-35 1.1E-39 314.9 33.4 326 28-367 102-619 (922)
46 2fsf_A Preprotein translocase 100.0 8E-36 2.8E-40 319.2 27.5 322 28-366 65-584 (853)
47 2xau_A PRE-mRNA-splicing facto 100.0 9.5E-37 3.2E-41 335.1 20.6 327 14-367 71-445 (773)
48 3h1t_A Type I site-specific re 100.0 1.1E-35 3.7E-40 320.5 25.6 303 38-363 178-556 (590)
49 2z83_A Helicase/nucleoside tri 100.0 1.8E-37 6.1E-42 323.4 11.0 269 47-365 15-313 (459)
50 3o8b_A HCV NS3 protease/helica 100.0 3.5E-37 1.2E-41 328.0 13.3 277 39-369 218-518 (666)
51 2v6i_A RNA helicase; membrane, 100.0 2.6E-36 8.9E-41 312.2 15.8 267 52-363 1-288 (431)
52 3dmq_A RNA polymerase-associat 100.0 1.1E-34 3.7E-39 326.8 29.5 315 38-363 153-611 (968)
53 3rc3_A ATP-dependent RNA helic 100.0 2.3E-34 7.8E-39 309.8 26.2 288 48-379 150-458 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 8.4E-33 2.9E-37 292.1 24.0 299 37-361 36-447 (500)
55 3jux_A Protein translocase sub 100.0 1.6E-30 5.3E-35 273.0 35.7 322 27-366 65-588 (822)
56 1z3i_X Similar to RAD54-like; 100.0 3.7E-30 1.3E-34 278.9 32.8 310 38-361 55-522 (644)
57 3mwy_W Chromo domain-containin 100.0 6.9E-30 2.4E-34 283.4 22.5 311 37-361 235-678 (800)
58 1c4o_A DNA nucleotide excision 100.0 6.9E-28 2.4E-32 261.0 30.4 201 160-374 327-559 (664)
59 3fe2_A Probable ATP-dependent 100.0 4.2E-27 1.4E-31 224.4 21.4 192 14-224 28-236 (242)
60 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.4E-27 8.2E-32 265.4 22.2 322 20-363 247-707 (1038)
61 2hjv_A ATP-dependent RNA helic 99.9 7.7E-27 2.6E-31 208.7 19.8 151 226-377 4-154 (163)
62 2d7d_A Uvrabc system protein B 99.9 2.8E-26 9.7E-31 248.2 27.8 202 160-373 333-564 (661)
63 3iuy_A Probable ATP-dependent 99.9 4.7E-27 1.6E-31 222.0 17.5 190 17-223 21-226 (228)
64 1q0u_A Bstdead; DEAD protein, 99.9 1.5E-26 5.3E-31 217.1 19.2 198 15-231 4-217 (219)
65 2rb4_A ATP-dependent RNA helic 99.9 2.7E-26 9.2E-31 207.7 19.5 148 230-377 6-159 (175)
66 3ly5_A ATP-dependent RNA helic 99.9 1.9E-26 6.6E-31 222.5 19.4 185 14-215 51-254 (262)
67 2pl3_A Probable ATP-dependent 99.9 2.7E-26 9.1E-31 218.0 19.4 192 13-224 23-231 (236)
68 1vec_A ATP-dependent RNA helic 99.9 4.5E-26 1.5E-30 211.6 20.5 189 15-222 3-204 (206)
69 3ber_A Probable ATP-dependent 99.9 2.4E-26 8.1E-31 220.1 18.0 194 12-224 40-246 (249)
70 3eaq_A Heat resistant RNA depe 99.9 4.5E-26 1.5E-30 212.6 19.2 137 242-378 15-151 (212)
71 1fuk_A Eukaryotic initiation f 99.9 3.7E-26 1.3E-30 204.7 16.2 134 243-376 15-148 (165)
72 1t5i_A C_terminal domain of A 99.9 7.7E-26 2.6E-30 203.9 17.8 134 243-376 16-150 (172)
73 1t6n_A Probable ATP-dependent 99.9 1.2E-25 4E-30 211.1 19.8 192 15-223 14-218 (220)
74 1qde_A EIF4A, translation init 99.9 7.2E-26 2.5E-30 213.1 18.2 191 13-223 12-214 (224)
75 2oxc_A Probable ATP-dependent 99.9 8.7E-26 3E-30 213.6 18.3 191 14-223 23-226 (230)
76 3bor_A Human initiation factor 99.9 9.1E-26 3.1E-30 214.5 18.4 192 14-223 29-232 (237)
77 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.3E-25 4.3E-30 204.9 17.2 148 228-376 16-164 (185)
78 2gxq_A Heat resistant RNA depe 99.9 2E-25 7E-30 207.2 18.8 189 16-223 2-203 (207)
79 1wrb_A DJVLGB; RNA helicase, D 99.9 1.1E-25 3.9E-30 216.0 15.1 196 13-224 21-238 (253)
80 3dkp_A Probable ATP-dependent 99.9 2.6E-25 8.9E-30 212.4 15.9 190 21-225 35-240 (245)
81 2p6n_A ATP-dependent RNA helic 99.9 5.3E-25 1.8E-29 201.7 16.9 144 229-374 27-171 (191)
82 3fmo_B ATP-dependent RNA helic 99.9 2.3E-25 7.8E-30 219.0 15.2 192 11-224 88-296 (300)
83 3i32_A Heat resistant RNA depe 99.9 1.4E-24 4.7E-29 212.3 18.4 136 243-378 13-148 (300)
84 2yjt_D ATP-dependent RNA helic 99.9 8.6E-27 2.9E-31 209.9 0.0 145 231-375 3-147 (170)
85 2ipc_A Preprotein translocase 99.9 3.2E-22 1.1E-26 214.0 32.9 324 26-367 68-700 (997)
86 2vl7_A XPD; helicase, unknown 99.9 2.8E-22 9.6E-27 212.7 22.3 315 33-363 3-519 (540)
87 3crv_A XPD/RAD3 related DNA he 99.8 2.5E-19 8.5E-24 190.7 26.1 313 38-364 3-530 (551)
88 3b6e_A Interferon-induced heli 99.8 1.1E-19 3.7E-24 169.4 9.8 162 34-202 29-216 (216)
89 2fz4_A DNA repair protein RAD2 99.8 3E-18 1E-22 162.3 13.2 139 38-207 93-232 (237)
90 1z5z_A Helicase of the SNF2/RA 99.8 1.8E-18 6.1E-23 166.9 10.5 119 243-361 95-218 (271)
91 1rif_A DAR protein, DNA helica 99.8 3E-18 1E-22 166.8 12.2 145 38-207 113-266 (282)
92 4a15_A XPD helicase, ATP-depen 99.8 5.1E-17 1.7E-21 174.4 22.3 162 195-364 377-583 (620)
93 3llm_A ATP-dependent RNA helic 99.7 5E-16 1.7E-20 146.9 12.6 148 38-207 61-222 (235)
94 1w36_D RECD, exodeoxyribonucle 98.4 1.9E-06 6.6E-11 92.2 13.6 77 23-99 134-217 (608)
95 4b3f_X DNA-binding protein smu 98.1 9.8E-06 3.4E-10 87.5 11.3 73 37-109 188-264 (646)
96 2gk6_A Regulator of nonsense t 98.0 4.5E-05 1.5E-09 81.9 14.3 72 36-107 178-253 (624)
97 2xzl_A ATP-dependent helicase 97.9 7.4E-05 2.5E-09 82.2 12.9 71 36-106 358-432 (802)
98 2wjy_A Regulator of nonsense t 97.8 0.0001 3.6E-09 80.9 13.0 72 37-108 355-430 (800)
99 3upu_A ATP-dependent DNA helic 97.6 0.00029 9.8E-09 72.7 12.3 63 34-96 21-92 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.5 0.00059 2E-08 72.2 12.4 59 38-96 189-250 (574)
101 3lfu_A DNA helicase II; SF1 he 97.3 0.036 1.2E-06 59.4 23.6 63 37-101 8-77 (647)
102 3hgt_A HDA1 complex subunit 3; 97.2 0.0036 1.2E-07 60.5 13.2 126 244-374 109-246 (328)
103 3ec2_A DNA replication protein 96.9 0.017 5.7E-07 51.0 13.4 30 41-70 17-55 (180)
104 3vkw_A Replicase large subunit 96.6 0.0044 1.5E-07 62.7 8.3 44 56-101 164-207 (446)
105 3te6_A Regulatory protein SIR3 96.5 0.044 1.5E-06 53.1 14.0 18 53-70 45-62 (318)
106 2o0j_A Terminase, DNA packagin 96.2 0.051 1.7E-06 54.1 13.4 63 38-100 163-230 (385)
107 2chg_A Replication factor C sm 96.0 0.068 2.3E-06 48.0 12.1 17 54-70 39-55 (226)
108 3syl_A Protein CBBX; photosynt 95.9 0.098 3.4E-06 50.2 13.5 17 54-70 68-84 (309)
109 2qby_B CDC6 homolog 3, cell di 95.8 0.083 2.9E-06 52.3 12.9 17 54-70 46-62 (384)
110 4a1f_A DNAB helicase, replicat 95.5 0.027 9.2E-07 55.1 7.6 149 46-202 35-205 (338)
111 2b8t_A Thymidine kinase; deoxy 95.5 0.0086 2.9E-07 55.0 3.7 36 53-88 12-50 (223)
112 2r6a_A DNAB helicase, replicat 95.4 0.044 1.5E-06 56.1 9.0 153 46-201 192-362 (454)
113 1a5t_A Delta prime, HOLB; zinc 95.3 0.045 1.5E-06 53.5 8.8 33 39-71 3-42 (334)
114 2q6t_A DNAB replication FORK h 95.3 0.027 9.2E-07 57.5 7.3 154 46-202 189-362 (444)
115 3vfd_A Spastin; ATPase, microt 95.3 0.056 1.9E-06 54.0 9.4 33 53-85 148-180 (389)
116 1fnn_A CDC6P, cell division co 95.3 0.13 4.6E-06 50.8 12.2 16 55-70 46-61 (389)
117 2p65_A Hypothetical protein PF 95.2 0.42 1.4E-05 41.4 13.9 18 53-70 43-60 (187)
118 3h4m_A Proteasome-activating n 95.2 0.027 9.4E-07 53.5 6.5 57 14-73 13-71 (285)
119 3eie_A Vacuolar protein sortin 95.2 0.074 2.5E-06 51.6 9.6 60 11-73 11-71 (322)
120 3co5_A Putative two-component 95.1 0.094 3.2E-06 44.2 9.0 20 51-70 25-44 (143)
121 2kjq_A DNAA-related protein; s 95.1 0.056 1.9E-06 46.1 7.6 19 52-70 35-53 (149)
122 3u61_B DNA polymerase accessor 95.1 0.066 2.2E-06 51.9 9.0 43 158-205 105-147 (324)
123 3cpe_A Terminase, DNA packagin 95.1 0.18 6.1E-06 53.4 13.0 63 38-100 163-230 (592)
124 2v1u_A Cell division control p 95.0 0.12 4.2E-06 51.0 11.1 18 53-70 44-61 (387)
125 1sxj_B Activator 1 37 kDa subu 95.0 0.096 3.3E-06 50.4 9.9 16 55-70 44-59 (323)
126 2orw_A Thymidine kinase; TMTK, 94.9 0.078 2.7E-06 47.0 8.1 37 52-88 2-41 (184)
127 1jbk_A CLPB protein; beta barr 94.9 0.51 1.7E-05 40.9 13.6 17 54-70 44-60 (195)
128 1l8q_A Chromosomal replication 94.8 0.067 2.3E-06 51.9 8.3 18 54-71 38-55 (324)
129 2zpa_A Uncharacterized protein 94.8 0.049 1.7E-06 57.9 7.6 54 38-91 175-230 (671)
130 2qz4_A Paraplegin; AAA+, SPG7, 94.8 0.26 8.9E-06 45.8 12.1 19 53-71 39-57 (262)
131 3bh0_A DNAB-like replicative h 94.7 0.39 1.3E-05 46.4 13.4 151 46-202 57-230 (315)
132 1gm5_A RECG; helicase, replica 94.7 0.067 2.3E-06 58.5 8.5 76 258-333 417-497 (780)
133 1d2n_A N-ethylmaleimide-sensit 94.6 0.075 2.6E-06 50.1 7.7 19 54-72 65-83 (272)
134 3bos_A Putative DNA replicatio 94.5 0.046 1.6E-06 50.1 6.0 18 53-70 52-69 (242)
135 3pvs_A Replication-associated 94.5 0.057 1.9E-06 55.1 7.1 20 55-74 52-71 (447)
136 1xwi_A SKD1 protein; VPS4B, AA 94.5 0.23 7.9E-06 48.2 11.2 56 13-72 7-64 (322)
137 3cf0_A Transitional endoplasmi 94.4 0.27 9.1E-06 47.2 11.4 67 13-83 10-79 (301)
138 2gno_A DNA polymerase III, gam 94.4 0.09 3.1E-06 50.7 7.9 44 157-206 81-124 (305)
139 1sxj_A Activator 1 95 kDa subu 94.4 0.093 3.2E-06 54.6 8.6 43 158-204 148-190 (516)
140 2dr3_A UPF0273 protein PH0284; 94.4 0.39 1.3E-05 44.0 12.0 51 52-103 22-75 (247)
141 2r2a_A Uncharacterized protein 94.2 0.029 1E-06 50.5 3.7 16 56-71 8-23 (199)
142 2qby_A CDC6 homolog 1, cell di 94.2 0.17 5.9E-06 49.8 9.7 18 53-70 45-62 (386)
143 1xx6_A Thymidine kinase; NESG, 94.2 0.044 1.5E-06 49.0 4.7 36 53-88 8-46 (191)
144 1xp8_A RECA protein, recombina 94.1 0.35 1.2E-05 47.8 11.7 140 1-171 4-165 (366)
145 2zan_A Vacuolar protein sortin 94.1 0.2 6.7E-06 51.0 10.1 21 54-74 168-188 (444)
146 3b9p_A CG5977-PA, isoform A; A 94.0 0.34 1.1E-05 46.1 11.1 20 53-72 54-73 (297)
147 2j9r_A Thymidine kinase; TK1, 94.0 0.077 2.6E-06 48.1 6.0 34 56-89 31-67 (214)
148 2w58_A DNAI, primosome compone 94.0 0.26 8.8E-06 43.9 9.7 17 54-70 55-71 (202)
149 3bgw_A DNAB-like replicative h 94.0 0.53 1.8E-05 47.8 13.0 151 46-202 186-359 (444)
150 1njg_A DNA polymerase III subu 94.0 0.78 2.7E-05 41.3 13.2 16 55-70 47-62 (250)
151 2qp9_X Vacuolar protein sortin 94.0 0.16 5.3E-06 50.1 8.8 19 54-72 85-103 (355)
152 2qgz_A Helicase loader, putati 93.8 0.079 2.7E-06 51.2 6.2 18 53-70 152-169 (308)
153 1sxj_D Activator 1 41 kDa subu 93.8 0.61 2.1E-05 45.3 12.7 17 54-70 59-75 (353)
154 4b4t_J 26S protease regulatory 93.6 0.23 7.8E-06 49.6 9.2 58 13-73 143-202 (405)
155 1uaa_A REP helicase, protein ( 93.6 0.058 2E-06 58.2 5.1 61 38-100 2-69 (673)
156 1lv7_A FTSH; alpha/beta domain 93.4 0.57 2E-05 43.4 11.3 18 54-71 46-63 (257)
157 2w0m_A SSO2452; RECA, SSPF, un 93.3 0.89 3.1E-05 41.0 12.3 34 52-85 22-58 (235)
158 1iqp_A RFCS; clamp loader, ext 93.3 0.77 2.6E-05 43.9 12.5 43 158-206 110-152 (327)
159 1w5s_A Origin recognition comp 93.3 0.67 2.3E-05 46.1 12.3 16 55-70 52-69 (412)
160 1pjr_A PCRA; DNA repair, DNA r 93.2 0.12 4.2E-06 56.2 7.1 62 37-100 10-78 (724)
161 3oiy_A Reverse gyrase helicase 93.2 0.19 6.3E-06 50.5 8.0 76 257-332 63-145 (414)
162 1g5t_A COB(I)alamin adenosyltr 93.1 0.17 5.9E-06 45.1 6.6 131 54-206 29-165 (196)
163 2cvh_A DNA repair and recombin 93.0 0.11 3.6E-06 47.0 5.3 33 53-85 20-52 (220)
164 2chq_A Replication factor C sm 93.0 0.19 6.6E-06 48.1 7.4 51 6-70 5-55 (319)
165 3u4q_A ATP-dependent helicase/ 92.9 0.13 4.5E-06 59.3 7.1 62 37-100 9-79 (1232)
166 3d8b_A Fidgetin-like protein 1 92.7 0.34 1.2E-05 47.6 9.0 30 53-82 117-146 (357)
167 3pfi_A Holliday junction ATP-d 92.7 0.43 1.5E-05 46.3 9.6 19 54-72 56-74 (338)
168 4b4t_H 26S protease regulatory 92.6 0.3 1E-05 49.5 8.4 58 12-72 203-262 (467)
169 3cf2_A TER ATPase, transitiona 92.5 0.3 1E-05 53.2 8.8 71 13-84 472-542 (806)
170 1sxj_C Activator 1 40 kDa subu 92.4 0.72 2.5E-05 44.8 10.8 41 159-205 111-151 (340)
171 2zts_A Putative uncharacterize 92.4 0.17 5.8E-06 46.6 5.9 55 147-202 124-181 (251)
172 1jr3_A DNA polymerase III subu 92.3 1.2 3.9E-05 43.7 12.4 43 157-205 118-160 (373)
173 1u94_A RECA protein, recombina 92.3 0.92 3.2E-05 44.5 11.4 62 25-86 16-99 (356)
174 4b4t_L 26S protease subunit RP 92.2 0.091 3.1E-06 53.2 4.0 58 12-72 175-234 (437)
175 2hjv_A ATP-dependent RNA helic 92.1 1.4 4.8E-05 37.6 11.1 60 77-138 34-93 (163)
176 2orv_A Thymidine kinase; TP4A 92.0 0.39 1.3E-05 43.9 7.6 37 53-89 19-58 (234)
177 2rb4_A ATP-dependent RNA helic 92.0 0.54 1.9E-05 40.8 8.4 79 57-138 12-92 (175)
178 3t15_A Ribulose bisphosphate c 92.0 0.28 9.4E-06 46.9 7.0 19 54-72 37-55 (293)
179 2z4s_A Chromosomal replication 91.9 0.4 1.4E-05 48.7 8.4 18 54-71 131-148 (440)
180 3kl4_A SRP54, signal recogniti 91.9 2.1 7E-05 43.2 13.5 123 55-208 99-228 (433)
181 2p6n_A ATP-dependent RNA helic 91.8 1.3 4.5E-05 39.1 10.9 74 62-138 38-112 (191)
182 3dm5_A SRP54, signal recogniti 91.8 2.6 9E-05 42.5 14.1 51 55-105 102-158 (443)
183 3hu3_A Transitional endoplasmi 91.5 0.58 2E-05 48.1 9.2 28 54-81 239-266 (489)
184 2z43_A DNA repair and recombin 91.4 0.72 2.5E-05 44.6 9.4 58 46-103 95-167 (324)
185 1n0w_A DNA repair protein RAD5 91.4 1.6 5.4E-05 39.7 11.4 33 53-85 24-65 (243)
186 1sxj_E Activator 1 40 kDa subu 91.4 1.6 5.5E-05 42.4 12.1 17 55-71 38-54 (354)
187 1vma_A Cell division protein F 91.1 2.9 9.8E-05 40.0 13.1 32 54-85 105-139 (306)
188 1t5i_A C_terminal domain of A 91.0 0.81 2.8E-05 39.6 8.5 60 77-138 30-89 (172)
189 1v5w_A DMC1, meiotic recombina 90.9 0.35 1.2E-05 47.3 6.6 58 46-103 110-182 (343)
190 3eaq_A Heat resistant RNA depe 90.8 2.4 8.3E-05 38.0 11.8 61 76-138 29-89 (212)
191 1fuk_A Eukaryotic initiation f 90.8 0.69 2.4E-05 39.7 7.8 60 77-138 29-88 (165)
192 1nlf_A Regulatory protein REPA 90.6 2.5 8.7E-05 39.6 12.2 21 50-70 27-47 (279)
193 2i1q_A DNA repair and recombin 90.6 0.84 2.9E-05 44.0 9.0 25 46-70 86-115 (322)
194 1cr0_A DNA primase/helicase; R 90.5 3.2 0.00011 39.2 13.0 34 52-85 34-71 (296)
195 1q57_A DNA primase/helicase; d 90.2 2.1 7.1E-05 44.1 12.0 146 53-203 242-404 (503)
196 1r6b_X CLPA protein; AAA+, N-t 90.1 1 3.4E-05 49.1 10.0 18 53-70 207-224 (758)
197 2qen_A Walker-type ATPase; unk 89.9 4.3 0.00015 38.9 13.6 18 53-70 31-48 (350)
198 4b4t_I 26S protease regulatory 89.8 0.54 1.9E-05 47.2 6.9 59 12-73 176-236 (437)
199 1ixz_A ATP-dependent metallopr 89.8 1.4 4.9E-05 40.6 9.6 19 54-72 50-68 (254)
200 2eyq_A TRCF, transcription-rep 89.5 1.6 5.5E-05 49.9 11.4 76 257-332 651-731 (1151)
201 2jgn_A DBX, DDX3, ATP-dependen 89.4 0.8 2.7E-05 40.3 7.1 74 62-138 28-104 (185)
202 3cmu_A Protein RECA, recombina 89.4 0.62 2.1E-05 55.6 7.9 96 46-171 1414-1518(2050)
203 4ddu_A Reverse gyrase; topoiso 89.3 0.57 2E-05 53.3 7.4 76 257-332 120-202 (1104)
204 3e2i_A Thymidine kinase; Zn-bi 89.1 0.56 1.9E-05 42.4 5.8 38 52-89 27-67 (219)
205 2fna_A Conserved hypothetical 88.9 5.1 0.00018 38.4 13.3 17 54-70 31-47 (357)
206 1sky_E F1-ATPase, F1-ATP synth 88.7 4 0.00014 41.4 12.4 120 46-193 141-273 (473)
207 2dhr_A FTSH; AAA+ protein, hex 88.5 12 0.00042 38.3 16.1 19 54-72 65-83 (499)
208 3cf2_A TER ATPase, transitiona 88.1 2 6.9E-05 46.8 10.4 21 54-74 239-259 (806)
209 2ehv_A Hypothetical protein PH 88.0 0.7 2.4E-05 42.4 5.9 20 52-71 29-48 (251)
210 3ber_A Probable ATP-dependent 87.8 2.3 7.8E-05 39.2 9.4 71 257-331 110-191 (249)
211 2ce7_A Cell division protein F 87.6 1.7 6E-05 44.3 9.1 19 54-72 50-68 (476)
212 1qvr_A CLPB protein; coiled co 87.6 2.4 8.1E-05 46.9 10.9 18 54-71 192-209 (854)
213 3hws_A ATP-dependent CLP prote 87.1 2 6.7E-05 42.1 9.0 22 53-74 51-72 (363)
214 1oyw_A RECQ helicase, ATP-depe 87.0 1.2 4.2E-05 46.2 7.7 58 259-316 66-123 (523)
215 2v1x_A ATP-dependent DNA helic 86.9 0.93 3.2E-05 47.8 6.8 60 258-317 84-145 (591)
216 2zr9_A Protein RECA, recombina 86.9 2.4 8E-05 41.5 9.3 42 45-86 47-97 (349)
217 3i32_A Heat resistant RNA depe 86.7 2.5 8.5E-05 40.3 9.1 62 76-139 26-87 (300)
218 2vhj_A Ntpase P4, P4; non- hyd 86.3 1.2 4.2E-05 42.9 6.7 18 53-70 123-140 (331)
219 1t6n_A Probable ATP-dependent 86.2 2.2 7.6E-05 38.1 8.2 70 259-331 83-163 (220)
220 3n70_A Transport activator; si 86.2 0.57 1.9E-05 39.3 3.9 21 52-72 23-43 (145)
221 3cmw_A Protein RECA, recombina 86.0 2.7 9.4E-05 49.5 10.5 96 46-171 719-823 (1706)
222 2x8a_A Nuclear valosin-contain 85.3 0.41 1.4E-05 45.2 2.8 56 13-72 5-63 (274)
223 3io5_A Recombination and repai 84.8 0.99 3.4E-05 43.4 5.2 87 55-171 30-124 (333)
224 3b85_A Phosphate starvation-in 84.5 0.89 3E-05 40.9 4.5 35 36-70 5-39 (208)
225 2i4i_A ATP-dependent RNA helic 84.4 3.9 0.00013 40.4 9.8 60 77-138 275-334 (417)
226 3fe2_A Probable ATP-dependent 84.1 2.5 8.7E-05 38.5 7.6 70 258-331 102-181 (242)
227 2oxc_A Probable ATP-dependent 84.1 1.5 5.3E-05 39.7 6.1 56 257-317 91-151 (230)
228 2yhs_A FTSY, cell division pro 83.8 9.1 0.00031 39.1 12.1 30 55-84 295-327 (503)
229 2r8r_A Sensor protein; KDPD, P 83.6 11 0.00037 34.2 11.3 17 55-71 8-24 (228)
230 3cmu_A Protein RECA, recombina 83.5 6.8 0.00023 47.0 12.4 97 45-171 369-474 (2050)
231 1qvr_A CLPB protein; coiled co 83.4 1.3 4.4E-05 49.0 6.1 17 55-71 590-606 (854)
232 1ypw_A Transitional endoplasmi 83.1 3.7 0.00013 45.0 9.5 22 53-74 238-259 (806)
233 3hr8_A Protein RECA; alpha and 83.0 3.9 0.00013 39.9 8.8 44 45-88 47-99 (356)
234 3e70_C DPA, signal recognition 82.1 17 0.00057 35.0 12.8 48 159-210 212-260 (328)
235 1hv8_A Putative ATP-dependent 82.0 9.2 0.00031 36.7 11.2 60 77-138 237-296 (367)
236 3lda_A DNA repair protein RAD5 82.0 9.1 0.00031 38.0 11.2 41 46-86 166-220 (400)
237 1ofh_A ATP-dependent HSL prote 81.9 2.9 9.9E-05 39.5 7.3 19 53-71 50-68 (310)
238 1e9r_A Conjugal transfer prote 81.9 0.73 2.5E-05 46.5 3.1 41 52-92 52-95 (437)
239 1xti_A Probable ATP-dependent 81.5 11 0.00037 36.7 11.6 61 76-138 248-308 (391)
240 2p5t_B PEZT; postsegregational 81.5 14 0.00048 33.8 11.7 18 55-72 34-51 (253)
241 3fht_A ATP-dependent RNA helic 81.3 4 0.00014 40.2 8.4 60 77-138 265-324 (412)
242 2oap_1 GSPE-2, type II secreti 81.2 1.9 6.5E-05 44.5 6.0 31 39-69 245-276 (511)
243 1s2m_A Putative ATP-dependent 80.9 4.4 0.00015 39.8 8.5 60 77-138 257-316 (400)
244 3pey_A ATP-dependent RNA helic 80.5 4.5 0.00015 39.4 8.4 60 77-138 242-301 (395)
245 2r44_A Uncharacterized protein 80.4 2 6.9E-05 41.3 5.7 24 48-71 41-64 (331)
246 3m6a_A ATP-dependent protease 80.0 2.3 8E-05 44.2 6.3 20 53-72 108-127 (543)
247 1vec_A ATP-dependent RNA helic 79.3 4 0.00014 35.9 6.9 55 258-316 71-130 (206)
248 2gxq_A Heat resistant RNA depe 79.3 4.2 0.00014 35.7 7.0 55 258-316 72-128 (207)
249 2j0s_A ATP-dependent RNA helic 79.3 5 0.00017 39.6 8.3 60 77-138 275-334 (410)
250 1ls1_A Signal recognition part 79.1 38 0.0013 31.8 14.1 33 53-85 98-133 (295)
251 1p9r_A General secretion pathw 79.0 1.7 5.7E-05 43.7 4.6 31 39-69 151-183 (418)
252 3iuy_A Probable ATP-dependent 78.8 3.2 0.00011 37.3 6.2 71 257-331 93-172 (228)
253 1um8_A ATP-dependent CLP prote 78.8 6.4 0.00022 38.5 8.9 22 53-74 72-93 (376)
254 3bor_A Human initiation factor 78.6 2.8 9.7E-05 38.1 5.8 72 257-331 97-178 (237)
255 4b4t_K 26S protease regulatory 78.3 0.78 2.7E-05 46.2 1.9 58 13-73 167-226 (428)
256 3nbx_X ATPase RAVA; AAA+ ATPas 77.4 2.9 0.0001 42.9 6.0 28 45-72 33-60 (500)
257 2xxa_A Signal recognition part 76.9 37 0.0013 34.0 13.8 42 55-96 102-149 (433)
258 3hjh_A Transcription-repair-co 76.6 3.6 0.00012 42.1 6.3 49 53-101 14-62 (483)
259 2v9p_A Replication protein E1; 76.6 1.5 5.2E-05 41.9 3.3 34 52-86 125-159 (305)
260 3ly5_A ATP-dependent RNA helic 76.3 8.4 0.00029 35.5 8.4 71 258-332 126-207 (262)
261 2db3_A ATP-dependent RNA helic 76.2 11 0.00038 37.7 9.9 59 78-138 300-358 (434)
262 2d7d_A Uvrabc system protein B 75.5 11 0.00037 40.2 10.0 82 76-169 443-524 (661)
263 4b4t_M 26S protease regulatory 75.4 1.8 6E-05 43.7 3.6 70 12-84 175-246 (434)
264 1gvn_B Zeta; postsegregational 75.2 13 0.00046 34.8 9.6 32 55-86 35-66 (287)
265 1c4o_A DNA nucleotide excision 75.1 11 0.00038 40.1 10.0 82 76-169 437-518 (664)
266 3a8t_A Adenylate isopentenyltr 74.9 1.8 6.3E-05 41.9 3.4 17 54-70 41-57 (339)
267 1kgd_A CASK, peripheral plasma 74.9 1.7 6E-05 37.7 3.0 20 52-71 4-23 (180)
268 2ffh_A Protein (FFH); SRP54, s 74.6 71 0.0024 31.7 15.4 42 55-96 100-146 (425)
269 2gza_A Type IV secretion syste 74.5 2 6.9E-05 42.2 3.7 21 50-70 172-192 (361)
270 2pl3_A Probable ATP-dependent 74.4 7.3 0.00025 35.1 7.3 55 257-316 96-154 (236)
271 2yjt_D ATP-dependent RNA helic 76.3 0.65 2.2E-05 40.1 0.0 58 78-137 30-87 (170)
272 1lvg_A Guanylate kinase, GMP k 73.7 2 6.9E-05 38.0 3.2 19 52-70 3-21 (198)
273 1qde_A EIF4A, translation init 73.6 2.9 0.0001 37.4 4.3 55 257-316 81-139 (224)
274 3gk5_A Uncharacterized rhodane 73.5 2.7 9.1E-05 33.1 3.6 38 257-294 54-91 (108)
275 3foj_A Uncharacterized protein 73.2 2.5 8.4E-05 32.7 3.2 37 257-293 55-91 (100)
276 3exa_A TRNA delta(2)-isopenten 72.9 2.4 8.2E-05 40.7 3.6 17 55-71 5-21 (322)
277 3eme_A Rhodanese-like domain p 72.8 2.5 8.6E-05 32.8 3.2 37 257-293 55-91 (103)
278 3egc_A Putative ribose operon 72.8 57 0.002 29.8 14.5 177 89-284 25-211 (291)
279 2eyu_A Twitching motility prot 72.7 1.6 5.6E-05 40.7 2.4 20 51-70 23-42 (261)
280 4fcw_A Chaperone protein CLPB; 72.5 2 7E-05 40.7 3.1 17 55-71 49-65 (311)
281 3vaa_A Shikimate kinase, SK; s 72.5 2.1 7.2E-05 37.8 3.0 21 52-72 24-44 (199)
282 3cmw_A Protein RECA, recombina 72.1 5.4 0.00019 47.1 7.0 97 46-172 1418-1523(1706)
283 1tue_A Replication protein E1; 72.1 5.1 0.00018 35.8 5.4 44 24-70 28-75 (212)
284 3tau_A Guanylate kinase, GMP k 71.9 2.2 7.5E-05 38.0 3.0 21 52-72 7-27 (208)
285 3foz_A TRNA delta(2)-isopenten 71.9 2.5 8.5E-05 40.5 3.4 15 56-70 13-27 (316)
286 2pt7_A CAG-ALFA; ATPase, prote 71.3 2.3 7.7E-05 41.2 3.1 21 50-70 168-188 (330)
287 2bjv_A PSP operon transcriptio 71.3 3.3 0.00011 38.3 4.2 21 52-72 28-48 (265)
288 1tf7_A KAIC; homohexamer, hexa 71.2 22 0.00077 36.5 11.0 36 52-87 280-318 (525)
289 3nwn_A Kinesin-like protein KI 71.1 3 0.0001 40.8 4.0 24 47-70 97-122 (359)
290 3sqw_A ATP-dependent RNA helic 70.6 10 0.00035 39.6 8.3 60 77-138 287-349 (579)
291 1bg2_A Kinesin; motor protein, 70.5 3.3 0.00011 40.0 4.0 25 47-71 70-96 (325)
292 3i5x_A ATP-dependent RNA helic 70.4 17 0.00057 37.6 9.9 60 77-138 338-400 (563)
293 3tr0_A Guanylate kinase, GMP k 70.3 2.2 7.6E-05 37.6 2.7 20 52-71 6-25 (205)
294 3iwh_A Rhodanese-like domain p 69.9 3.2 0.00011 32.5 3.2 36 258-293 56-91 (103)
295 1wv9_A Rhodanese homolog TT165 69.6 3.2 0.00011 31.6 3.1 35 259-293 54-88 (94)
296 3trf_A Shikimate kinase, SK; a 69.4 2.6 9E-05 36.4 2.9 20 53-72 5-24 (185)
297 2j37_W Signal recognition part 69.3 53 0.0018 33.5 13.0 41 55-95 103-148 (504)
298 3tb6_A Arabinose metabolism tr 68.9 69 0.0024 29.2 15.7 181 89-284 32-226 (298)
299 2l82_A Designed protein OR32; 68.9 18 0.00061 28.1 7.0 51 261-311 5-55 (162)
300 3dc4_A Kinesin-like protein NO 68.8 3.4 0.00012 40.2 3.8 24 47-70 87-112 (344)
301 3gbj_A KIF13B protein; kinesin 68.8 3.7 0.00012 40.1 4.0 25 46-70 84-110 (354)
302 1u0j_A DNA replication protein 68.7 4.4 0.00015 37.8 4.3 46 22-71 71-122 (267)
303 2vvg_A Kinesin-2; motor protei 68.5 3.8 0.00013 39.9 4.0 38 33-70 57-107 (350)
304 3b6u_A Kinesin-like protein KI 68.5 3.7 0.00013 40.4 4.0 24 47-70 94-119 (372)
305 1t5c_A CENP-E protein, centrom 68.4 3.7 0.00013 40.0 4.0 24 47-70 70-95 (349)
306 2y65_A Kinesin, kinesin heavy 68.3 3.8 0.00013 40.2 4.0 24 47-70 77-102 (365)
307 2h58_A Kinesin-like protein KI 68.3 3.9 0.00013 39.5 4.0 25 46-70 72-98 (330)
308 1v8k_A Kinesin-like protein KI 68.2 3.5 0.00012 41.1 3.8 25 47-71 147-173 (410)
309 3g5j_A Putative ATP/GTP bindin 68.1 4.6 0.00016 32.7 4.0 37 259-295 90-127 (134)
310 1kag_A SKI, shikimate kinase I 68.1 3.5 0.00012 35.1 3.4 21 53-73 4-24 (173)
311 1zp6_A Hypothetical protein AT 68.0 2.4 8.4E-05 36.8 2.4 21 52-72 8-28 (191)
312 2qor_A Guanylate kinase; phosp 68.0 2.5 8.4E-05 37.5 2.4 22 50-71 9-30 (204)
313 4a14_A Kinesin, kinesin-like p 67.8 4 0.00014 39.7 4.0 24 47-70 76-101 (344)
314 2nr8_A Kinesin-like protein KI 67.5 3.9 0.00013 40.0 4.0 25 46-70 95-121 (358)
315 3a00_A Guanylate kinase, GMP k 67.5 3.5 0.00012 35.9 3.3 18 54-71 2-19 (186)
316 1z6g_A Guanylate kinase; struc 67.4 3.5 0.00012 37.1 3.4 21 51-71 21-41 (218)
317 1goj_A Kinesin, kinesin heavy 67.4 3.7 0.00013 40.1 3.7 23 48-70 74-98 (355)
318 2j41_A Guanylate kinase; GMP, 67.3 2.7 9.4E-05 37.0 2.6 21 52-72 5-25 (207)
319 2ze6_A Isopentenyl transferase 67.3 3 0.0001 38.6 2.9 15 56-70 4-18 (253)
320 4etp_A Kinesin-like protein KA 67.2 4.1 0.00014 40.5 4.1 26 46-71 132-159 (403)
321 2zfi_A Kinesin-like protein KI 67.2 4.1 0.00014 40.0 4.0 24 47-70 82-107 (366)
322 3lw7_A Adenylate kinase relate 67.2 2.5 8.6E-05 35.8 2.3 17 56-72 4-20 (179)
323 3lre_A Kinesin-like protein KI 67.1 3.9 0.00013 40.0 3.8 24 47-70 98-123 (355)
324 3eiq_A Eukaryotic initiation f 67.0 5.8 0.0002 39.0 5.2 59 78-138 280-338 (414)
325 3ney_A 55 kDa erythrocyte memb 66.9 3.4 0.00012 36.7 3.0 20 52-71 18-37 (197)
326 2qmh_A HPR kinase/phosphorylas 66.8 2.6 9E-05 37.5 2.3 17 53-69 34-50 (205)
327 2lci_A Protein OR36; structura 66.7 39 0.0013 25.4 13.2 107 196-316 3-109 (134)
328 3crm_A TRNA delta(2)-isopenten 66.4 3.7 0.00013 39.5 3.4 16 55-70 7-22 (323)
329 3iij_A Coilin-interacting nucl 66.4 3.9 0.00013 35.2 3.4 21 52-72 10-30 (180)
330 3uk6_A RUVB-like 2; hexameric 66.3 2.9 0.0001 40.7 2.8 19 54-72 71-89 (368)
331 1x88_A Kinesin-like protein KI 66.2 3.9 0.00013 40.0 3.6 24 47-70 81-106 (359)
332 1qhx_A CPT, protein (chloramph 66.1 3.1 0.00011 35.6 2.7 20 53-72 3-22 (178)
333 1wp9_A ATP-dependent RNA helic 66.0 15 0.00051 36.5 8.3 59 77-137 360-426 (494)
334 3dbi_A Sugar-binding transcrip 65.7 89 0.0031 29.3 17.9 177 89-284 80-267 (338)
335 4a2p_A RIG-I, retinoic acid in 65.5 7.2 0.00025 40.1 5.8 71 258-332 55-136 (556)
336 2wbe_C Bipolar kinesin KRP-130 65.5 4.3 0.00015 40.0 3.8 25 47-71 93-119 (373)
337 2heh_A KIF2C protein; kinesin, 65.3 4.3 0.00015 40.1 3.7 24 47-70 127-152 (387)
338 3tbk_A RIG-I helicase domain; 65.2 5.5 0.00019 40.9 4.8 70 258-331 52-132 (555)
339 1znw_A Guanylate kinase, GMP k 65.2 3.6 0.00012 36.5 3.0 23 49-71 16-38 (207)
340 4a2q_A RIG-I, retinoic acid in 65.1 8.8 0.0003 41.9 6.6 70 258-331 296-376 (797)
341 2oca_A DAR protein, ATP-depend 65.0 44 0.0015 33.8 11.6 98 78-192 347-444 (510)
342 3u06_A Protein claret segregat 65.0 4.8 0.00016 40.2 4.0 25 46-70 130-156 (412)
343 4gp7_A Metallophosphoesterase; 64.7 2.6 8.8E-05 36.3 1.8 21 52-72 8-28 (171)
344 3nwj_A ATSK2; P loop, shikimat 64.7 4.6 0.00016 37.3 3.6 22 52-73 47-68 (250)
345 4ag6_A VIRB4 ATPase, type IV s 64.4 6.3 0.00022 38.9 4.9 38 52-89 34-74 (392)
346 2owm_A Nckin3-434, related to 64.3 4.5 0.00015 40.8 3.7 24 47-70 129-154 (443)
347 2ewv_A Twitching motility prot 64.2 3 0.0001 41.1 2.4 19 52-70 135-153 (372)
348 2bdt_A BH3686; alpha-beta prot 64.1 5.7 0.0002 34.4 4.1 19 55-73 4-22 (189)
349 3vkg_A Dynein heavy chain, cyt 64.1 8.8 0.0003 48.1 6.8 64 22-87 873-946 (3245)
350 1pzn_A RAD51, DNA repair and r 64.0 5.1 0.00017 39.0 4.0 40 46-85 119-172 (349)
351 3kb2_A SPBC2 prophage-derived 63.9 3.9 0.00013 34.6 2.9 17 55-71 3-19 (173)
352 3hix_A ALR3790 protein; rhodan 63.9 5 0.00017 31.3 3.2 38 257-294 51-89 (106)
353 3cob_A Kinesin heavy chain-lik 63.6 4.4 0.00015 39.8 3.5 25 46-70 71-97 (369)
354 1y63_A LMAJ004144AAA protein; 63.6 4.1 0.00014 35.4 2.9 21 52-72 9-29 (184)
355 3o74_A Fructose transport syst 63.2 84 0.0029 28.1 19.5 178 90-283 20-204 (272)
356 4eun_A Thermoresistant glucoki 63.1 4.3 0.00015 35.8 3.0 20 52-71 28-47 (200)
357 3dmq_A RNA polymerase-associat 63.1 17 0.00057 40.7 8.5 61 77-137 502-563 (968)
358 3cm0_A Adenylate kinase; ATP-b 63.0 3.1 0.0001 36.0 2.0 21 52-72 3-23 (186)
359 4akg_A Glutathione S-transfera 63.0 9.1 0.00031 47.4 6.6 51 22-74 890-944 (2695)
360 1gku_B Reverse gyrase, TOP-RG; 63.0 7.1 0.00024 44.2 5.4 72 258-331 99-180 (1054)
361 3d3q_A TRNA delta(2)-isopenten 62.9 4.6 0.00016 39.1 3.4 16 55-70 9-24 (340)
362 2fsx_A RV0390, COG0607: rhodan 62.9 8.2 0.00028 32.2 4.6 37 257-293 79-116 (148)
363 1kht_A Adenylate kinase; phosp 62.8 4.3 0.00015 35.1 3.0 19 53-71 3-21 (192)
364 1wrb_A DJVLGB; RNA helicase, D 62.7 11 0.00038 34.3 6.0 70 258-331 100-179 (253)
365 1g41_A Heat shock protein HSLU 62.7 9.5 0.00033 38.4 5.8 20 53-72 50-69 (444)
366 3jvv_A Twitching mobility prot 62.7 3.9 0.00013 40.0 2.9 19 52-70 122-140 (356)
367 1ojl_A Transcriptional regulat 62.7 3.5 0.00012 39.2 2.5 20 53-72 25-44 (304)
368 1f9v_A Kinesin-like protein KA 62.7 3.9 0.00013 39.8 2.9 24 48-71 78-103 (347)
369 3t0q_A AGR253WP; kinesin, alph 62.5 4 0.00014 39.8 2.9 26 46-71 77-104 (349)
370 1s96_A Guanylate kinase, GMP k 62.5 4.4 0.00015 36.5 3.0 22 50-71 13-34 (219)
371 1ly1_A Polynucleotide kinase; 62.3 4.4 0.00015 34.6 2.9 16 56-71 5-20 (181)
372 2jtq_A Phage shock protein E; 62.2 13 0.00043 27.4 5.2 36 257-293 40-76 (85)
373 3flh_A Uncharacterized protein 62.1 4.2 0.00014 32.8 2.6 37 258-294 71-109 (124)
374 1ex7_A Guanylate kinase; subst 62.0 6.4 0.00022 34.5 3.9 17 54-70 2-18 (186)
375 2r62_A Cell division protease 61.7 5.2 0.00018 36.9 3.5 18 54-71 45-62 (268)
376 3bfn_A Kinesin-like protein KI 60.9 4.6 0.00016 39.9 3.0 31 40-70 76-116 (388)
377 1knq_A Gluconate kinase; ALFA/ 60.6 4.2 0.00014 34.8 2.4 19 53-71 8-26 (175)
378 1qxn_A SUD, sulfide dehydrogen 60.2 6.4 0.00022 32.4 3.4 38 257-294 81-119 (137)
379 3nhv_A BH2092 protein; alpha-b 60.1 5.7 0.0002 33.1 3.1 37 258-294 72-110 (144)
380 2v6i_A RNA helicase; membrane, 60.0 12 0.00043 37.3 6.2 56 78-139 171-226 (431)
381 3fmo_B ATP-dependent RNA helic 59.8 6.6 0.00022 37.2 3.9 68 258-332 162-241 (300)
382 2k0z_A Uncharacterized protein 59.8 9.4 0.00032 29.9 4.2 38 256-293 54-91 (110)
383 2c9o_A RUVB-like 1; hexameric 59.7 4.6 0.00016 40.9 2.9 18 54-71 64-81 (456)
384 1hqc_A RUVB; extended AAA-ATPa 59.7 5 0.00017 38.2 3.0 18 54-71 39-56 (324)
385 1iy2_A ATP-dependent metallopr 59.5 7.4 0.00025 36.2 4.2 18 55-72 75-92 (278)
386 3dkp_A Probable ATP-dependent 59.0 3.3 0.00011 37.7 1.6 71 258-331 98-180 (245)
387 3uie_A Adenylyl-sulfate kinase 58.6 4.7 0.00016 35.5 2.5 20 52-71 24-43 (200)
388 3eph_A TRNA isopentenyltransfe 58.5 5 0.00017 39.8 2.8 15 56-70 5-19 (409)
389 1c9k_A COBU, adenosylcobinamid 58.5 7.6 0.00026 33.8 3.7 31 56-87 2-32 (180)
390 1gmx_A GLPE protein; transfera 58.4 6.5 0.00022 30.7 3.0 38 257-294 57-95 (108)
391 1ry6_A Internal kinesin; kines 58.1 6.8 0.00023 38.3 3.6 20 52-71 82-103 (360)
392 3l49_A ABC sugar (ribose) tran 58.1 70 0.0024 29.1 10.9 182 90-283 23-215 (291)
393 3tqc_A Pantothenate kinase; bi 57.9 13 0.00044 35.7 5.5 15 56-70 95-109 (321)
394 3lnc_A Guanylate kinase, GMP k 57.9 4 0.00014 36.9 1.9 20 52-71 26-45 (231)
395 1q0u_A Bstdead; DEAD protein, 57.8 5.1 0.00017 35.7 2.6 55 258-316 72-134 (219)
396 1in4_A RUVB, holliday junction 57.8 5.8 0.0002 38.2 3.1 19 54-72 52-70 (334)
397 2rep_A Kinesin-like protein KI 57.6 5.8 0.0002 39.1 3.1 38 33-70 84-133 (376)
398 1f2t_A RAD50 ABC-ATPase; DNA d 57.6 4.9 0.00017 33.7 2.3 15 56-70 26-40 (149)
399 3t61_A Gluconokinase; PSI-biol 57.1 5.9 0.0002 34.8 2.9 18 54-71 19-36 (202)
400 1via_A Shikimate kinase; struc 57.0 6.8 0.00023 33.4 3.2 18 55-72 6-23 (175)
401 1tq1_A AT5G66040, senescence-a 57.0 7 0.00024 31.7 3.1 38 257-294 81-119 (129)
402 1tf5_A Preprotein translocase 56.8 22 0.00074 38.7 7.6 73 254-332 120-209 (844)
403 1xjc_A MOBB protein homolog; s 56.5 15 0.00052 31.5 5.3 14 56-69 7-20 (169)
404 2fsf_A Preprotein translocase 56.2 19 0.00066 39.1 7.0 55 257-317 114-172 (853)
405 1fuu_A Yeast initiation factor 56.2 18 0.00063 34.9 6.6 71 257-332 88-168 (394)
406 1yks_A Genome polyprotein [con 56.2 7.6 0.00026 39.1 3.8 57 77-139 176-232 (440)
407 3d1p_A Putative thiosulfate su 56.1 7.8 0.00027 31.8 3.3 38 257-294 90-128 (139)
408 2i3b_A HCR-ntpase, human cance 56.1 7.7 0.00026 34.0 3.4 42 157-203 104-145 (189)
409 3k1j_A LON protease, ATP-depen 56.0 9.7 0.00033 40.1 4.8 26 48-73 55-80 (604)
410 1ye8_A Protein THEP1, hypothet 55.9 6.7 0.00023 34.0 2.9 15 56-70 3-17 (178)
411 1cke_A CK, MSSA, protein (cyti 55.7 6.5 0.00022 35.1 2.9 19 54-72 6-24 (227)
412 3zvl_A Bifunctional polynucleo 55.5 40 0.0014 33.4 9.0 17 56-72 261-277 (416)
413 3c8u_A Fructokinase; YP_612366 55.3 5.3 0.00018 35.4 2.2 18 53-70 22-39 (208)
414 2c95_A Adenylate kinase 1; tra 55.3 6.8 0.00023 34.0 2.9 21 52-72 8-28 (196)
415 4gl2_A Interferon-induced heli 55.2 10 0.00036 40.4 4.9 59 78-138 400-472 (699)
416 1zuh_A Shikimate kinase; alpha 55.2 6.8 0.00023 33.2 2.8 20 54-73 8-27 (168)
417 3qf7_A RAD50; ABC-ATPase, ATPa 55.1 5.2 0.00018 39.2 2.3 16 55-70 25-40 (365)
418 1tev_A UMP-CMP kinase; ploop, 55.0 5.9 0.0002 34.2 2.5 19 53-71 3-21 (196)
419 2hhg_A Hypothetical protein RP 55.0 6.7 0.00023 32.2 2.7 38 257-294 85-123 (139)
420 3fb4_A Adenylate kinase; psych 54.9 6.7 0.00023 34.8 2.9 17 56-72 3-19 (216)
421 1g8p_A Magnesium-chelatase 38 54.6 8.2 0.00028 37.0 3.6 20 53-72 45-64 (350)
422 3qk7_A Transcriptional regulat 54.2 1.3E+02 0.0044 27.4 15.7 178 89-284 27-212 (294)
423 3dr5_A Putative O-methyltransf 54.0 1.2E+02 0.004 26.8 17.8 136 24-169 23-166 (221)
424 2rhm_A Putative kinase; P-loop 54.0 7 0.00024 33.8 2.8 18 54-71 6-23 (193)
425 2va8_A SSO2462, SKI2-type heli 54.0 54 0.0019 34.9 10.4 67 71-139 245-347 (715)
426 1zd8_A GTP:AMP phosphotransfer 53.9 7.1 0.00024 35.1 2.9 20 53-72 7-26 (227)
427 3asz_A Uridine kinase; cytidin 53.6 6.2 0.00021 34.8 2.4 19 53-71 6-24 (211)
428 2qt1_A Nicotinamide riboside k 53.5 11 0.00038 33.1 4.1 20 53-72 21-40 (207)
429 3dl0_A Adenylate kinase; phosp 53.5 7.3 0.00025 34.5 2.9 17 56-72 3-19 (216)
430 3kta_A Chromosome segregation 53.4 7.8 0.00027 33.2 3.0 17 55-71 28-44 (182)
431 1nks_A Adenylate kinase; therm 53.4 7.3 0.00025 33.5 2.8 16 56-71 4-19 (194)
432 2bwj_A Adenylate kinase 5; pho 53.0 9.9 0.00034 32.9 3.6 20 52-71 11-30 (199)
433 1e6c_A Shikimate kinase; phosp 53.0 8 0.00027 32.7 2.9 19 54-72 3-21 (173)
434 2l8b_A Protein TRAI, DNA helic 53.0 27 0.00093 30.4 6.2 73 18-91 8-93 (189)
435 3sr0_A Adenylate kinase; phosp 52.9 7.7 0.00026 34.6 2.9 16 56-71 3-18 (206)
436 3a4m_A L-seryl-tRNA(SEC) kinas 52.9 12 0.00041 34.4 4.4 18 54-71 5-22 (260)
437 2iyv_A Shikimate kinase, SK; t 52.8 9.1 0.00031 32.9 3.3 19 54-72 3-21 (184)
438 1nij_A Hypothetical protein YJ 52.5 9.5 0.00032 36.5 3.7 32 56-87 7-39 (318)
439 3umf_A Adenylate kinase; rossm 52.4 8 0.00027 34.8 2.9 18 54-71 30-47 (217)
440 4a74_A DNA repair and recombin 52.4 6.5 0.00022 35.1 2.3 19 53-71 25-43 (231)
441 3h75_A Periplasmic sugar-bindi 52.3 1.5E+02 0.0053 27.7 18.1 180 91-284 23-230 (350)
442 1vee_A Proline-rich protein fa 52.2 11 0.00036 30.8 3.5 36 258-293 74-110 (134)
443 3f9v_A Minichromosome maintena 51.8 5.8 0.0002 41.7 2.2 17 55-71 329-345 (595)
444 1nkt_A Preprotein translocase 51.7 30 0.001 37.8 7.6 58 254-317 148-209 (922)
445 3tif_A Uncharacterized ABC tra 51.7 7.5 0.00026 35.4 2.7 20 52-71 30-49 (235)
446 1qf9_A UMP/CMP kinase, protein 51.6 8.1 0.00028 33.2 2.8 18 55-72 8-25 (194)
447 1zak_A Adenylate kinase; ATP:A 51.4 9.3 0.00032 34.1 3.2 20 53-72 5-24 (222)
448 3gv0_A Transcriptional regulat 51.4 1.4E+02 0.0048 27.0 12.4 41 243-284 173-213 (288)
449 4e22_A Cytidylate kinase; P-lo 51.4 8.4 0.00029 35.4 3.0 22 52-73 26-47 (252)
450 3nh6_A ATP-binding cassette SU 51.2 7.3 0.00025 37.2 2.5 21 52-72 79-99 (306)
451 2wv9_A Flavivirin protease NS2 51.0 16 0.00056 38.9 5.5 57 77-139 409-465 (673)
452 2plr_A DTMP kinase, probable t 51.0 6.7 0.00023 34.4 2.2 20 52-71 3-22 (213)
453 1jjv_A Dephospho-COA kinase; P 50.7 8.6 0.00029 33.8 2.9 18 56-73 5-22 (206)
454 3ilm_A ALR3790 protein; rhodan 50.6 11 0.00036 31.3 3.2 36 258-293 56-92 (141)
455 2f1r_A Molybdopterin-guanine d 50.4 7.1 0.00024 33.7 2.1 16 55-70 4-19 (171)
456 1aky_A Adenylate kinase; ATP:A 50.3 9.3 0.00032 34.0 3.0 20 53-72 4-23 (220)
457 2cdn_A Adenylate kinase; phosp 50.1 9.2 0.00031 33.5 2.9 18 55-72 22-39 (201)
458 3pxg_A Negative regulator of g 50.1 14 0.00048 37.4 4.7 18 54-71 202-219 (468)
459 2if2_A Dephospho-COA kinase; a 50.0 8.9 0.00031 33.6 2.8 19 55-73 3-21 (204)
460 2v54_A DTMP kinase, thymidylat 49.8 9.7 0.00033 33.2 3.0 21 52-72 3-23 (204)
461 2bbw_A Adenylate kinase 4, AK4 49.6 9.2 0.00031 34.8 2.9 19 53-71 27-45 (246)
462 2pez_A Bifunctional 3'-phospho 49.1 8.6 0.0003 32.9 2.5 19 52-70 4-22 (179)
463 3oaa_A ATP synthase subunit al 49.0 64 0.0022 32.8 9.1 26 45-70 151-179 (513)
464 1sgw_A Putative ABC transporte 49.0 10 0.00035 34.0 3.1 21 52-72 34-54 (214)
465 2jaq_A Deoxyguanosine kinase; 48.9 9.7 0.00033 33.1 2.9 16 56-71 3-18 (205)
466 1w4r_A Thymidine kinase; type 48.9 14 0.00047 32.6 3.8 35 53-87 20-57 (195)
467 1svm_A Large T antigen; AAA+ f 48.8 10 0.00034 37.3 3.2 20 52-71 168-187 (377)
468 2px0_A Flagellar biosynthesis 48.8 9.1 0.00031 36.3 2.8 19 53-71 105-123 (296)
469 3bs4_A Uncharacterized protein 48.5 27 0.00093 32.3 5.9 58 47-105 10-75 (260)
470 3auy_A DNA double-strand break 48.4 7.4 0.00025 38.1 2.2 15 56-70 28-42 (371)
471 2cy8_A D-phgat, D-phenylglycin 48.4 2.1E+02 0.0071 28.1 14.0 39 130-169 201-245 (453)
472 2pt5_A Shikimate kinase, SK; a 48.3 10 0.00036 31.8 2.9 17 56-72 3-19 (168)
473 2cbz_A Multidrug resistance-as 48.2 9.1 0.00031 34.9 2.7 19 52-70 30-48 (237)
474 3jy6_A Transcriptional regulat 48.1 1.5E+02 0.0053 26.5 20.9 177 89-284 24-206 (276)
475 1z3i_X Similar to RAD54-like; 47.7 71 0.0024 33.6 9.9 78 62-139 396-477 (644)
476 1m7g_A Adenylylsulfate kinase; 47.7 10 0.00035 33.5 2.9 29 41-70 14-42 (211)
477 2yvu_A Probable adenylyl-sulfa 47.5 9.4 0.00032 32.9 2.5 19 53-71 13-31 (186)
478 1ukz_A Uridylate kinase; trans 47.4 11 0.00036 33.0 2.9 17 55-71 17-33 (203)
479 1uf9_A TT1252 protein; P-loop, 47.3 10 0.00036 32.9 2.8 20 55-74 10-29 (203)
480 1ak2_A Adenylate kinase isoenz 47.2 11 0.00038 33.9 3.0 20 53-72 16-35 (233)
481 3k4h_A Putative transcriptiona 47.1 1.6E+02 0.0055 26.5 18.2 177 89-284 30-217 (292)
482 1rj9_A FTSY, signal recognitio 47.1 10 0.00035 36.0 2.9 33 53-85 102-137 (304)
483 3gfo_A Cobalt import ATP-bindi 47.0 9.7 0.00033 35.6 2.7 20 52-71 33-52 (275)
484 2ius_A DNA translocase FTSK; n 46.9 11 0.00038 38.7 3.3 19 52-70 166-184 (512)
485 1z5z_A Helicase of the SNF2/RA 46.9 83 0.0028 29.0 9.2 80 61-141 92-175 (271)
486 2pcj_A ABC transporter, lipopr 46.8 8.7 0.0003 34.6 2.3 19 52-70 29-47 (224)
487 1e4v_A Adenylate kinase; trans 46.7 11 0.00036 33.5 2.8 17 56-72 3-19 (214)
488 4akg_A Glutathione S-transfera 46.4 14 0.00048 45.8 4.5 21 50-70 1264-1284(2695)
489 2ykg_A Probable ATP-dependent 46.4 19 0.00066 38.2 5.3 70 259-332 62-142 (696)
490 3b9q_A Chloroplast SRP recepto 46.3 9.5 0.00033 36.2 2.5 32 54-85 101-135 (302)
491 1j8m_F SRP54, signal recogniti 46.3 87 0.003 29.3 9.3 31 55-85 100-133 (297)
492 1urh_A 3-mercaptopyruvate sulf 46.3 23 0.00079 32.8 5.2 39 257-295 229-268 (280)
493 3tlx_A Adenylate kinase 2; str 46.1 11 0.00038 34.3 2.9 20 53-72 29-48 (243)
494 3be4_A Adenylate kinase; malar 46.1 12 0.0004 33.4 3.0 19 54-72 6-24 (217)
495 3qks_A DNA double-strand break 46.0 9.3 0.00032 33.8 2.3 16 55-70 25-40 (203)
496 1g6h_A High-affinity branched- 46.0 9.2 0.00031 35.3 2.3 19 52-70 32-50 (257)
497 2xb4_A Adenylate kinase; ATP-b 46.0 11 0.00039 33.6 2.9 17 56-72 3-19 (223)
498 2ff7_A Alpha-hemolysin translo 45.9 10 0.00036 34.7 2.7 21 52-72 34-54 (247)
499 2z0m_A 337AA long hypothetical 45.9 32 0.0011 32.2 6.4 70 258-332 56-135 (337)
500 1ji0_A ABC transporter; ATP bi 45.8 9.3 0.00032 34.9 2.3 20 52-71 31-50 (240)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.1e-76 Score=628.23 Aligned_cols=407 Identities=39% Similarity=0.715 Sum_probs=369.5
Q ss_pred CCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHH
Q 010563 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97 (507)
Q Consensus 18 ~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~ 97 (507)
..+++++.+...|++.|||.+|||+|.++|++++.|+|+++.||||+|||+||++|++...+.+|||+|+++|+.||++.
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~ 103 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMV 103 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccCh-hhHHHHHhhhccCCccEEEEeccccccccCCC
Q 010563 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (507)
Q Consensus 98 l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~ 176 (507)
++++|+++..++++............+.......+++|+|||.+... .+...+.+......+++|||||||++++|||+
T Consensus 104 l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~d 183 (591)
T 2v1x_A 104 LKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHD 183 (591)
T ss_dssp HHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTT
T ss_pred HHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccc
Confidence 99999999999999998888877777754455699999999998764 56666766666778999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecc-hhhHHHHHHHHHHh
Q 010563 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCSVLKA 255 (507)
Q Consensus 177 fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~-~~~~~~~l~~~l~~ 255 (507)
||+.|..|..++..+|+.|+++||||+++.+..++...+++..+..+..+++++|+.|.+..... ..+++..|.+++..
T Consensus 184 fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~ 263 (591)
T 2v1x_A 184 FRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLING 263 (591)
T ss_dssp CCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887643 34567778888764
Q ss_pred -cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeC
Q 010563 256 -NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (507)
Q Consensus 256 -~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (507)
..++++||||+|++.++.+++.|++.|+.+..|||+|++++|..++++|.+|+++|||||++++||||+|+|++|||++
T Consensus 264 ~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 264 RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESS
T ss_pred hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeC
Confidence 3567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhc-cCCchH
Q 010563 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCE-GSGCRR 413 (507)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Crr 413 (507)
+|.|++.|+||+|||||+|++|.|++||++.|...++.++... ......+..|+.||+ ...|||
T Consensus 344 ~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~Crr 408 (591)
T 2v1x_A 344 MSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVME---------------NVGQQKLYEMVSYCQNISKCRR 408 (591)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTS---------------TTHHHHHHHHHHHHTCSSSCHH
T ss_pred CCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhh---------------hhhHHHHHHHHHHHhcccccHH
Confidence 9999999999999999999999999999999999888877532 123456789999999 579999
Q ss_pred HHHHhhhCCCCCCCCCCCCCCCCCCh
Q 010563 414 KKILESFGEQIPVSLCKNSCDACKHP 439 (507)
Q Consensus 414 ~~~~~~f~~~~~~~~c~~~Cd~c~~~ 439 (507)
+.+++|||+...+..|+.+||+|..+
T Consensus 409 ~~ll~~f~e~~~~~~c~~~Cd~C~~~ 434 (591)
T 2v1x_A 409 VLMAQHFDEVWNSEACNKMCDNCCKD 434 (591)
T ss_dssp HHHHHHHTCCC---CCCSCBHHHHCC
T ss_pred HHHHHHcCCCCCccccCCCCCCCCCC
Confidence 99999999987667898899999876
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.8e-75 Score=614.89 Aligned_cols=405 Identities=41% Similarity=0.732 Sum_probs=369.9
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHH
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~ 94 (507)
..|+.+++++.+...|++.|||.+|||+|.++|+++++|+|+++.||||+|||+||++|++...+.+|||+|+++|+.||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~ 81 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQ 81 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC
Q 010563 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (507)
Q Consensus 95 ~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (507)
++.++.+|+++..+++.............+..+. .+++|+|||.+.++.+...+. ...+++|||||||++++||
T Consensus 82 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~--~~ilv~Tpe~l~~~~~~~~l~----~~~~~~vViDEaH~i~~~g 155 (523)
T 1oyw_A 82 VDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHLA----HWNPVLLAVDEAHCISQWG 155 (523)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC--CSEEEECHHHHTSTTHHHHHT----TSCEEEEEESSGGGGCTTS
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHhChHHHHHHh----hCCCCEEEEeCccccCcCC
Confidence 9999999999999999998887777777776664 899999999998776655543 3569999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHH
Q 010563 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (507)
Q Consensus 175 ~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~ 254 (507)
++||+.|..+..++..+|+.|++++|||+++.+..++.+.+++.++.++..+++++|+.|.+... .++...+.+++.
T Consensus 156 ~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~---~~~~~~l~~~l~ 232 (523)
T 1oyw_A 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEK---FKPLDQLMRYVQ 232 (523)
T ss_dssp SCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEEC---SSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeC---CCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988765 356677888888
Q ss_pred hcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeC
Q 010563 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (507)
Q Consensus 255 ~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~ 334 (507)
...+.++||||+|++.++.+++.|++.|+.+..|||+|++++|..+++.|.+|+.+|||||++++||||+|+|++|||++
T Consensus 233 ~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 233 EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHHHHHHHHHhccCCchHH
Q 010563 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRK 414 (507)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Crr~ 414 (507)
+|.|+++|+||+|||||+|++|.|++||++.|...++.++..... ++..+.....+.+|+.||++..|||+
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~~---------~~~~~~~~~~l~~m~~~~~~~~crr~ 383 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQ---------GQLQDIERHKLNAMGAFAEAQTCRRL 383 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSCC---------SHHHHHHHHHHHHHHHHHTCSSCHHH
T ss_pred CCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccCc---------HHHHHHHHHHHHHHHHHHhccccHhh
Confidence 999999999999999999999999999999999999988875211 12224455678999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCCCCCCCCh
Q 010563 415 KILESFGEQIPVSLCKNSCDACKHP 439 (507)
Q Consensus 415 ~~~~~f~~~~~~~~c~~~Cd~c~~~ 439 (507)
.+++||||..+ .+|+ .||+|..+
T Consensus 384 ~l~~~f~e~~~-~~c~-~cd~c~~~ 406 (523)
T 1oyw_A 384 VLLNYFGEGRQ-EPCG-NCDICLDP 406 (523)
T ss_dssp HHHHHTTCCCC-SCCS-CBHHHHSC
T ss_pred hhHhhcCCCCC-CCCC-CCCCCCCC
Confidence 99999999864 5688 59999864
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4e-52 Score=431.94 Aligned_cols=334 Identities=19% Similarity=0.275 Sum_probs=273.6
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------CCeEE
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVL 82 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~-----------~~~~l 82 (507)
...|+.+++++.+.+.|++ +||..|+|+|.++|+.+++|+|++++||||+|||++|++|++.. ...+|
T Consensus 55 ~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred cCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 3457788999999999998 79999999999999999999999999999999999999998742 45899
Q ss_pred EecChHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccC
Q 010563 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRG 157 (507)
Q Consensus 83 vi~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~ 157 (507)
|++||++|+.|+.+.+++++ +++..+.++........ .+.. ..+|+++||+.+.. .+. ......
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Ivv~Tp~~l~~-----~l~~~~~~l~ 202 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---CITR---GCHVVIATPGRLLD-----FVDRTFITFE 202 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---HHTT---CCSEEEECHHHHHH-----HHHTTSCCCT
T ss_pred EEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---Hhhc---CCCEEEEChHHHHH-----HHHhCCcccc
Confidence 99999999999999999854 56677777766544322 2222 37888888876522 221 123356
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccC---CCCceEE
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFY 234 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~~~ni~~ 234 (507)
.++++|+||||++.+|| |++.+..+.......++.+++++|||+++.+...... .+.++..+.... ...++..
T Consensus 203 ~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~~~~i~~ 278 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGE--FLKNYVFVAIGIVGGACSDVKQ 278 (434)
T ss_dssp TCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHT--TCSSCEEEEESSTTCCCTTEEE
T ss_pred cCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHH--hccCCEEEEeccccccccccce
Confidence 68999999999999998 8888877755544456889999999999887764433 344565544322 2334444
Q ss_pred EEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEE
Q 010563 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (507)
Q Consensus 235 ~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (507)
.+.... ...+...|.+++.....+ +||||++++.++.+++.|.+.|+.+..+||++++.+|..++++|++|+.+||||
T Consensus 279 ~~~~~~-~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 279 TIYEVN-KYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EEEECC-GGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred EEEEeC-cHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 443332 346778888888876654 999999999999999999999999999999999999999999999999999999
Q ss_pred eCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 315 T~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
|+++++|||+|+|++||+||+|.++++|+||+||+||.|+.|.+++|+++.
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred chhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 999999999999999999999999999999999999999999999999854
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.1e-52 Score=447.36 Aligned_cols=344 Identities=17% Similarity=0.230 Sum_probs=269.5
Q ss_pred ChHHHHHHHHHHhcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEEEecChH
Q 010563 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLI 88 (507)
Q Consensus 21 ~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~--~g~d~lv~apTG~GKTl~~~lp~l~~----------~~~~lvi~P~~ 88 (507)
.+++.+.+.|++ +||..|||+|.++|+.++ .|+|+++.||||+|||++|++|++.. ..++|||+|++
T Consensus 27 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 27 VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SSCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 378899999987 799999999999999999 77899999999999999999998742 34899999999
Q ss_pred HHHHHHHHHHHHc-----C---CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCcc
Q 010563 89 ALMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN 160 (507)
Q Consensus 89 ~L~~q~~~~l~~~-----g---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~ 160 (507)
+|+.|+.+.++++ + +....+.++...... ...+... ..+|+++||+.+... +... .......++
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~--~~~IlV~Tp~~l~~~--l~~~-~~~~~~~~~ 177 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKL--RPNIVIATPGRLIDV--LEKY-SNKFFRFVD 177 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHH--CCSEEEECHHHHHHH--HHHH-HHHHCTTCC
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHH---HHHHhcC--CCCEEEECHHHHHHH--HHhc-cccccccCC
Confidence 9999999999874 2 345555555544332 2222222 267999998876321 1111 122345689
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-----CCCEEEEeecCChhhHHHHHHHhCCCCCeEEec---cC----C
Q 010563 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SF----N 228 (507)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-----~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~----~ 228 (507)
+|||||||++++|| |++.+..+........ +.++++||||+++.+...+...+ ..+..+.. .. .
T Consensus 178 ~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l--~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 178 YKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM--NKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp EEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTC--CSSEEEEEESSCSSSCSS
T ss_pred EEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHc--CCCceEEEeecCcccccc
Confidence 99999999999999 9999998877765433 67899999999998766544433 33332221 11 1
Q ss_pred CCceEEEEEeecchh----hHHHHHHHHHHh-cCCccEEEEeccchhHHHHHHHHHhC---CCceeEecCCCCHHHHHHH
Q 010563 229 RPNLFYEVRYKDLLD----DAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSV 300 (507)
Q Consensus 229 ~~ni~~~v~~~~~~~----~~~~~l~~~l~~-~~~~~~IVf~~s~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~ 300 (507)
...+...+....... ..+..+...+.. ..+.++||||+|++.++.+++.|++. ++.+..|||+|++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 223333333333222 223334444443 45678999999999999999999886 8999999999999999999
Q ss_pred HHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 010563 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 301 ~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~ 377 (507)
+++|++|+.+|||||+++++|||+|+|++||++++|.+++.|+||+|||||+|+.|.|++|+.+.|...++.+.+..
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887754
No 5
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.5e-51 Score=439.18 Aligned_cols=343 Identities=17% Similarity=0.221 Sum_probs=267.5
Q ss_pred hHHHHHHHHHHhcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHHHhcC----------CCeEEEecChHH
Q 010563 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLIA 89 (507)
Q Consensus 22 l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~--~g~d~lv~apTG~GKTl~~~lp~l~~----------~~~~lvi~P~~~ 89 (507)
+++.+.+.|.+ +||..|+|+|.++|+.++ .++|+++.||||+|||++|++|++.. ..++|||+|+++
T Consensus 79 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 77889999987 799999999999999999 67899999999999999999998742 248999999999
Q ss_pred HHHHHHHHHHHc--------CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccE
Q 010563 90 LMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (507)
Q Consensus 90 L~~q~~~~l~~~--------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~ 161 (507)
|+.|+.+.++++ +.....+.++...... ...+... ..+|+++||+.+...- ... .......+++
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~--~~~Iiv~Tp~~l~~~l--~~~-~~~~~~~~~~ 229 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKL--RPNIVIATPGRLIDVL--EKY-SNKFFRFVDY 229 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHH--CCSEEEECHHHHHHHH--HHH-HHHHCTTCCE
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH---HHHHhcC--CCCEEEECcHHHHHHH--Hhc-cccccccceE
Confidence 999999999873 2345555555554332 2222222 2689999988663211 111 1223456899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhC-----CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec-c------CCC
Q 010563 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-----PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-S------FNR 229 (507)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-----~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~------~~~ 229 (507)
|||||||++++|| |++.+..+....... +++++++||||+++.+...+...+ ..+..+.. . ...
T Consensus 230 lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 305 (563)
T 3i5x_A 230 KVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM--NKKECLFLDTVDKNEPEAH 305 (563)
T ss_dssp EEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTC--CSSEEEEEESSCSSSCSSC
T ss_pred EEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhc--CCCceEEEeccCCCCcccc
Confidence 9999999999999 999998887765442 367899999999998766444333 33332221 1 112
Q ss_pred CceEEEEEeecchhh----HHHHHHHHHHh-cCCccEEEEeccchhHHHHHHHHHhC---CCceeEecCCCCHHHHHHHH
Q 010563 230 PNLFYEVRYKDLLDD----AYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVL 301 (507)
Q Consensus 230 ~ni~~~v~~~~~~~~----~~~~l~~~l~~-~~~~~~IVf~~s~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~ 301 (507)
..+...+........ ....+...+.. ..+.++||||+|++.++.+++.|++. ++.+..|||+|++.+|..++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 385 (563)
T 3i5x_A 306 ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 385 (563)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred ccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Confidence 233333333322222 23333333433 45678999999999999999999886 89999999999999999999
Q ss_pred HHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 010563 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 302 ~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~ 377 (507)
+.|++|+.+|||||+++++|||+|+|++||++++|.|++.|+||+|||||.|+.|.|++|+.+.|...++.+.+..
T Consensus 386 ~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 386 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887653
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-50 Score=417.40 Aligned_cols=345 Identities=20% Similarity=0.294 Sum_probs=277.2
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----------------
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------- 77 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~----------------- 77 (507)
..|+++++++.+.+.|.. +||..|+|+|.++++.++.|+|+++.+|||+|||++|++|++..
T Consensus 15 ~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 15 ESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp SSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 458888999999999988 69999999999999999999999999999999999999998742
Q ss_pred -------CCeEEEecChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhh
Q 010563 78 -------PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146 (507)
Q Consensus 78 -------~~~~lvi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~ 146 (507)
..++||++|+++|+.|+.+.++++ ++....+.++........ .+.. ..+|+++||+.+..
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---~~~I~v~Tp~~l~~--- 164 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLER---GCHLLVATPGRLVD--- 164 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTT---CCSEEEECHHHHHH---
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhC---CCCEEEEChHHHHH---
Confidence 157999999999999999999874 567777777766544322 2222 36888888886632
Q ss_pred HHHHH-hhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC--CCCEEEEeecCChhhHHHHHHHhCCCCCeEE
Q 010563 147 MSKLK-KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (507)
Q Consensus 147 ~~~l~-~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (507)
.+. .......+++|||||||++.+|+ |++.+..+.......+ ..+++++|||+++.+...+...+ .++..+
T Consensus 165 --~l~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~ 238 (417)
T 2i4i_A 165 --MMERGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL--DEYIFL 238 (417)
T ss_dssp --HHHTTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC--SSCEEE
T ss_pred --HHHcCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEE
Confidence 121 12235568999999999999988 8887776644322222 57899999999988766554444 344433
Q ss_pred ec---cCCCCceEEEEEeecchhhHHHHHHHHHHhc-CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHH
Q 010563 224 KS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299 (507)
Q Consensus 224 ~~---~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~ 299 (507)
.. ....+++...+.... ...+...+.++++.. .++++||||++++.++.+++.|.+.|+.+..+||+++.++|..
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~ 317 (417)
T 2i4i_A 239 AVGRVGSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE 317 (417)
T ss_dssp EEC----CCSSEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred EeCCCCCCccCceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHH
Confidence 32 233455655554433 256777788888775 4678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 300 ~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
++++|++|+.+|||||+++++|||+|++++||++++|.|+..|+||+||+||.|+.|.|++|+++.|...+..+.+.
T Consensus 318 ~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 394 (417)
T 2i4i_A 318 ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDL 394 (417)
T ss_dssp HHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHH
T ss_pred HHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777666543
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.9e-50 Score=411.37 Aligned_cols=346 Identities=19% Similarity=0.318 Sum_probs=280.5
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEecC
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~P 86 (507)
....|+.+++++.+.+.|++ +||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. ...++||++|
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 34568888999999999988 7999999999999999999999999999999999999999984 3578999999
Q ss_pred hHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccE
Q 010563 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNL 161 (507)
Q Consensus 87 ~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~ 161 (507)
+++|+.|+.+.+++++ +.+....++......... +..+ .+++++||+.+.. .+. .......+++
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~---~~ivv~Tp~~l~~-----~l~~~~~~~~~~~~ 182 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---LDYG---QHVVAGTPGRVFD-----MIRRRSLRTRAIKM 182 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---HHHC---CSEEEECHHHHHH-----HHHTTSSCCTTCCE
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---hhcC---CCEEEcCHHHHHH-----HHHhCCccHhheeE
Confidence 9999999999998864 566666666655443222 2222 5788888876532 121 1233456899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec---cCCCCceEEEEE
Q 010563 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVR 237 (507)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~ni~~~v~ 237 (507)
||+||||++.+++ |+..+.. +.... ++.+++++|||+++.+...+.. .+.++..+.. ....+++...+.
T Consensus 183 vViDEah~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (410)
T 2j0s_A 183 LVLDEADEMLNKG--FKEQIYD---VYRYLPPATQVVLISATLPHEILEMTNK--FMTDPIRILVKRDELTLEGIKQFFV 255 (410)
T ss_dssp EEEETHHHHTSTT--THHHHHH---HHTTSCTTCEEEEEESCCCHHHHTTGGG--TCSSCEEECCCGGGCSCTTEEEEEE
T ss_pred EEEccHHHHHhhh--hHHHHHH---HHHhCccCceEEEEEcCCCHHHHHHHHH--HcCCCEEEEecCccccCCCceEEEE
Confidence 9999999999987 6655444 34444 4788999999999876543322 2345544432 223445555444
Q ss_pred eecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc
Q 010563 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (507)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (507)
.......+...+.+++.....+++||||++++.++.+++.|.+.|+.+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 256 ~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 335 (410)
T 2j0s_A 256 AVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 335 (410)
T ss_dssp EESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG
T ss_pred EeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh
Confidence 44444557888888888877789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 010563 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~ 377 (507)
+++|||+|++++||++++|.|...|+||+||+||.|++|.|++|++..|...++.+.+..
T Consensus 336 ~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~ 395 (410)
T 2j0s_A 336 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYY 395 (410)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHT
T ss_pred hhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988888776643
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.8e-49 Score=407.56 Aligned_cols=345 Identities=20% Similarity=0.268 Sum_probs=279.8
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEecCh
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~P~ 87 (507)
...|+++++++.+.+.|.+ +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++. ...++||++|+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 4568899999999999998 7999999999999999999999999999999999999999874 34589999999
Q ss_pred HHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccEE
Q 010563 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (507)
Q Consensus 88 ~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~i 162 (507)
++|+.|+.+.++.+ ++.+....++........ .+ ....+++++||+.+.. .+. .......+++|
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~Ivv~T~~~l~~-----~~~~~~~~~~~~~~v 167 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RL---NETVHILVGTPGRVLD-----LASRKVADLSDCSLF 167 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HT---TSCCSEEEECHHHHHH-----HHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---Hh---cCCCCEEEEchHHHHH-----HHHhCCcccccCCEE
Confidence 99999999999885 567777776665443211 11 2347898898886532 121 22345668999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEe--ccCCCCceEEEEEee
Q 010563 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYK 239 (507)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~~~ni~~~v~~~ 239 (507)
||||||++.+.+ |+..+ ..+...++ ..+++++|||++..+...+...+. .+..+. .....+++.......
T Consensus 168 IiDEaH~~~~~~--~~~~~---~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T 1s2m_A 168 IMDEADKMLSRD--FKTII---EQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH--KPYEINLMEELTLKGITQYYAFV 240 (400)
T ss_dssp EEESHHHHSSHH--HHHHH---HHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS--SCEEESCCSSCBCTTEEEEEEEC
T ss_pred EEeCchHhhhhc--hHHHH---HHHHHhCCcCceEEEEEecCCHHHHHHHHHHcC--CCeEEEeccccccCCceeEEEEe
Confidence 999999987643 44433 34444444 678999999999988777666553 333332 223344444333332
Q ss_pred cchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccc
Q 010563 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (507)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~ 319 (507)
. ...+...+..++.....+++||||++++.++.+++.|++.|+.+..+||+++..+|..+++.|++|+.+|||||++++
T Consensus 241 ~-~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (400)
T 1s2m_A 241 E-ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 319 (400)
T ss_dssp C-GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSS
T ss_pred c-hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Confidence 2 246777788888887778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcc
Q 010563 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (507)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~ 378 (507)
+|+|+|++++||++++|.|+..|+||+||+||.|++|.|++|+++.|...++.+.+...
T Consensus 320 ~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 378 (400)
T 1s2m_A 320 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELG 378 (400)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred cCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998888877543
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.3e-49 Score=402.61 Aligned_cols=343 Identities=15% Similarity=0.226 Sum_probs=275.4
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEecChH
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P~~ 88 (507)
..|+++++++.+.+.|.+ +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++.. ..++||++|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 457888999999999998 79999999999999999999999999999999999999998753 45899999999
Q ss_pred HHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccEE
Q 010563 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (507)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~i 162 (507)
+|+.|+.+.++++ ++.+..+.++.......... ..+ ..+++++||+.+.. .+. .......+++|
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~--~~~iiv~T~~~l~~-----~~~~~~~~~~~~~~v 156 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKN--CPHIVVGTPGRILA-----LARNKSLNLKHIKHF 156 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH---HHS--CCSEEEECHHHHHH-----HHHTTSSCCTTCSEE
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH---hcC--CCCEEEECHHHHHH-----HHHcCCccccccCEE
Confidence 9999999999886 78888888877665443322 222 25788888886542 111 12235668999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc----CCCCceEEEEE
Q 010563 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVR 237 (507)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~----~~~~ni~~~v~ 237 (507)
||||||++.+|. .|+..+.. +....+ +.+++++|||+++.....+...+. .+..+... ....++...+.
T Consensus 157 ViDEaH~~~~~~-~~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 230 (391)
T 1xti_A 157 ILDECDKMLEQL-DMRRDVQE---IFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ--DPMEIFVDDETKLTLHGLQQYYV 230 (391)
T ss_dssp EECSHHHHTSSH-HHHHHHHH---HHHTSCSSSEEEEEESSCCSTHHHHHHHHCS--SCEEEECCCCCCCCCTTCEEEEE
T ss_pred EEeCHHHHhhcc-chHHHHHH---HHhhCCCCceEEEEEeeCCHHHHHHHHHHcC--CCeEEEecCccccCcccceEEEE
Confidence 999999998862 25554443 344444 788999999999987776555543 44433322 12233333333
Q ss_pred eecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc
Q 010563 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (507)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (507)
.. ....+...+.++++....+++||||++++.++.+++.|.+.|+.+..+||+++.++|..+++.|++|+.+|||||++
T Consensus 231 ~~-~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 309 (391)
T 1xti_A 231 KL-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 309 (391)
T ss_dssp EC-CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred Ec-CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh
Confidence 22 23567788888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchH-HHHHHHHH
Q 010563 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFILS 375 (507)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~-~~~~~~~~ 375 (507)
+++|+|+|++++||++++|.|+..|+||+||+||.|++|.|++|+++.+. ..++.+.+
T Consensus 310 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 368 (391)
T 1xti_A 310 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368 (391)
T ss_dssp CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHH
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987754 44444443
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.5e-49 Score=406.22 Aligned_cols=346 Identities=19% Similarity=0.277 Sum_probs=264.6
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEecCh
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~P~ 87 (507)
...|+.+++++.+.+.|++ +|+..|+++|.++++.+++|+++++.+|||+|||++|++|++. ...++||++|+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hcCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 3556778899999999998 7999999999999999999999999999999999999999875 46789999999
Q ss_pred HHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH-HhhhccCCccEE
Q 010563 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLV 162 (507)
Q Consensus 88 ~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~~~~~~~~l~~i 162 (507)
++|+.|+.+.++.+ +.......++...... ...+..+ ..+++++||+.+.. .+ ........+++|
T Consensus 118 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~iiv~T~~~l~~-----~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 118 RELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME--APHIIVGTPGRVFD-----MLNRRYLSPKYIKMF 187 (414)
T ss_dssp HHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT--CCSEEEECHHHHHH-----HHHHTSSCSTTCCEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC--CCCEEEECHHHHHH-----HHHcCCcccccCcEE
Confidence 99999999999885 4555555555443332 2223222 36888888886632 22 222345568999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc---CCCCceEEEEEe
Q 010563 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRY 238 (507)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~ni~~~v~~ 238 (507)
||||||++.+|+ |...+. .+...+ ++.+++++|||+++.+...+... +.++..+... ....++......
T Consensus 188 ViDEah~~~~~~--~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (414)
T 3eiq_A 188 VLDEADEMLSRG--FKDQIY---DIFQKLNSNTQVVLLSATMPSDVLEVTKKF--MRDPIRILVKKEELTLEGIRQFYIN 260 (414)
T ss_dssp EECSHHHHHHTT--THHHHH---HHHTTSCTTCEEEEECSCCCHHHHHHHTTT--CSSCEEECCCCCCCCTTSCCEEEEE
T ss_pred EEECHHHhhccC--cHHHHH---HHHHhCCCCCeEEEEEEecCHHHHHHHHHH--cCCCEEEEecCCccCCCCceEEEEE
Confidence 999999999887 554443 344444 57899999999998876644332 3445444322 223344444444
Q ss_pred ecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc
Q 010563 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (507)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (507)
....+.+...+..+++....+++||||++++.++.+++.|.+.++.+..+||+++.++|..+++.|++|+.+|||||+++
T Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 261 VEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 340 (414)
T ss_dssp CSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred eChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 44445688889999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 010563 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~ 377 (507)
++|||+|++++||++++|.|...|+||+||+||.|++|.|++++++.|...++.+.+..
T Consensus 341 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 399 (414)
T 3eiq_A 341 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 399 (414)
T ss_dssp C--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHT
T ss_pred ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988887776543
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.1e-48 Score=390.32 Aligned_cols=340 Identities=19% Similarity=0.292 Sum_probs=274.5
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEecChH
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLI 88 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g-~d~lv~apTG~GKTl~~~lp~l~-----~~~~~lvi~P~~ 88 (507)
..|+.+++++.+.+.|++ +|+..|+|+|.++++.++++ +++++.+|||+|||++|++|++. ...++||++|++
T Consensus 6 ~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CCGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred CchhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 347788999999999998 69999999999999999988 69999999999999999999874 256899999999
Q ss_pred HHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccEEE
Q 010563 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVA 163 (507)
Q Consensus 89 ~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~iV 163 (507)
+|+.|+.+.++++ ++.+....++.......... . ..+++++||+.+.. .+. .......++++|
T Consensus 85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~----~~~iiv~T~~~l~~-----~~~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K----NANIVVGTPGRILD-----HINRGTLNLKNVKYFI 152 (367)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H----TCSEEEECHHHHHH-----HHHTTCSCTTSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C----CCCEEEecHHHHHH-----HHHcCCcccccCCEEE
Confidence 9999999999884 56667677666554332222 1 26788888886532 121 122346689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecch
Q 010563 164 IDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (507)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~ 242 (507)
+||||++.+|+ |...+.. +.... ++.+++++|||+++.....+...++ ++..+.... ..++....... ..
T Consensus 153 iDEah~~~~~~--~~~~~~~---~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~-~~ 223 (367)
T 1hv8_A 153 LDEADEMLNMG--FIKDVEK---ILNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAKI-NANIEQSYVEV-NE 223 (367)
T ss_dssp EETHHHHHTTT--THHHHHH---HHHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECCS-SSSSEEEEEEC-CG
T ss_pred EeCchHhhhhc--hHHHHHH---HHHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEecC-CCCceEEEEEe-Ch
Confidence 99999999887 5554443 44444 4788999999999988776665543 333333322 23333333222 23
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccc
Q 010563 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (507)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (507)
.++...+..+++ ..+.++||||++++.++.+++.|++.|+.+..+||+++..+|..+++.|++|+.+|||||+++++|+
T Consensus 224 ~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 302 (367)
T 1hv8_A 224 NERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302 (367)
T ss_dssp GGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHC
T ss_pred HHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 567777887776 3456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 010563 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 323 D~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~ 377 (507)
|+|++++||++++|.|+..|+||+||+||.|++|.+++++++.|...++.+.+..
T Consensus 303 d~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~ 357 (367)
T 1hv8_A 303 DVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAM 357 (367)
T ss_dssp CCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHH
T ss_pred CcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888877654
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.9e-48 Score=399.74 Aligned_cols=347 Identities=19% Similarity=0.245 Sum_probs=274.1
Q ss_pred cccccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhc------CCCe
Q 010563 9 QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA------KPGI 80 (507)
Q Consensus 9 ~~~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~~lp~l~------~~~~ 80 (507)
........|+.+++++.+.+.|++ +|+..|+|+|.++++.++.+ +++++.+|||+|||++|++|++. ..++
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~ 97 (412)
T 3fht_A 19 SPLYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ 97 (412)
T ss_dssp STTCCSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCC
T ss_pred CCccccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCC
Confidence 334556678999999999999998 79999999999999999987 89999999999999999999873 2348
Q ss_pred EEEecChHHHHHHHHHHHHHcC-----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--h
Q 010563 81 VLVVSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--I 153 (507)
Q Consensus 81 ~lvi~P~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~ 153 (507)
+||++|+++|+.|+.+.+++++ +.......+..... ......+++++||+.+.. .+.+ .
T Consensus 98 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ivv~T~~~l~~-----~~~~~~~ 163 (412)
T 3fht_A 98 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTVLD-----WCSKLKF 163 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT---------TCCCCCSEEEECHHHHHH-----HHTTSCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh---------hhcCCCCEEEECchHHHH-----HHHhcCC
Confidence 9999999999999998888853 44444443332110 112235788888876522 1211 2
Q ss_pred hccCCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc---CC
Q 010563 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FN 228 (507)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~ 228 (507)
.....+++|||||||++.+ ++ |...+..+ .... ++.+++++|||+++.+.......+ .++..+... ..
T Consensus 164 ~~~~~~~~iViDEah~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 236 (412)
T 3fht_A 164 IDPKKIKVFVLDEADVMIATQG--HQDQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEET 236 (412)
T ss_dssp SCGGGCCEEEEETHHHHHSTTT--THHHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEECCCGGGSS
T ss_pred cChhhCcEEEEeCHHHHhhcCC--cHHHHHHH---HhhCCCCceEEEEEeecCHHHHHHHHHhc--CCCeEEeecccccc
Confidence 2335689999999999987 44 55544433 3333 478999999999998877555544 345444332 23
Q ss_pred CCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCC
Q 010563 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (507)
Q Consensus 229 ~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (507)
.+++............+...+..++.....+++||||++++.++.+++.|.+.|+.+..+||+|+..+|..+++.|++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 316 (412)
T 3fht_A 237 LDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 316 (412)
T ss_dssp CTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC
Confidence 44555555555555678888888888877889999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCcccccccCCCccEEEEeCCC------CCHHHHHHHhcccCCCCCCceEEEEeccch-HHHHHHHHHhc
Q 010563 309 KQVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKN 377 (507)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d-~~~~~~~~~~~ 377 (507)
.+|||||+++++|||+|++++||++++| .+...|+||+||+||.|+.|.|+++++..+ ...++.+.+..
T Consensus 317 ~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 392 (412)
T 3fht_A 317 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHF 392 (412)
T ss_dssp CSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHH
T ss_pred CcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHH
Confidence 9999999999999999999999999999 578999999999999999999999998765 55565555543
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.2e-48 Score=396.79 Aligned_cols=339 Identities=17% Similarity=0.253 Sum_probs=270.2
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhc------CCCeEEEec
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~ 85 (507)
...|+.+++++.+.+.|.+ +|+..|+|+|.++++.++.+ +++++.+|||+|||++|++|++. ..+++||++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 3568899999999999998 79999999999999999998 89999999999999999999874 356899999
Q ss_pred ChHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH-HhhhccCCcc
Q 010563 86 PLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLN 160 (507)
Q Consensus 86 P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~~~~~~~~l~ 160 (507)
|+++|+.|+.+.+++++ +......+..... ......+++++||+.+.. .+ ........++
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~iiv~T~~~l~~-----~~~~~~~~~~~~~ 147 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK----------NKQINAQVIVGTPGTVLD-----LMRRKLMQLQKIK 147 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT----------TSCBCCSEEEECHHHHHH-----HHHTTCBCCTTCC
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh----------hccCCCCEEEEcHHHHHH-----HHHcCCcccccCC
Confidence 99999999999999854 4444444332211 111246788888886632 22 1223356689
Q ss_pred EEEEeccccccc-cCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec---cCCCCceEEE
Q 010563 161 LVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYE 235 (507)
Q Consensus 161 ~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~ni~~~ 235 (507)
+|||||||++.+ ++ |+..+..+ .... ++.+++++|||+++.+.......+. ++..+.. ....+++...
T Consensus 148 ~iIiDEah~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 220 (395)
T 3pey_A 148 IFVLDEADNMLDQQG--LGDQCIRV---KRFLPKDTQLVLFSATFADAVRQYAKKIVP--NANTLELQTNEVNVDAIKQL 220 (395)
T ss_dssp EEEEETHHHHHHSTT--HHHHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHSC--SCEEECCCGGGCSCTTEEEE
T ss_pred EEEEEChhhhcCccc--cHHHHHHH---HHhCCCCcEEEEEEecCCHHHHHHHHHhCC--CCeEEEccccccccccccEE
Confidence 999999999987 44 55544433 4444 3689999999999887665555443 3333222 2344555555
Q ss_pred EEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 010563 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (507)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT 315 (507)
.........+...+..++.....+++||||++++.++.+++.|++.|+.+..+||+++..+|..+++.|++|+.+|||||
T Consensus 221 ~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T 300 (395)
T 3pey_A 221 YMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITT 300 (395)
T ss_dssp EEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEEC
T ss_pred EEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEEC
Confidence 55544556777888888887778899999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCccEEEEeCCCC------CHHHHHHHhcccCCCCCCceEEEEeccchHHHH-HHHHH
Q 010563 316 VAFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFILS 375 (507)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~------s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~-~~~~~ 375 (507)
+++++|||+|++++||++++|. |+..|+||+||+||.|+.|.|++|+...+...+ +.+.+
T Consensus 301 ~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~ 367 (395)
T 3pey_A 301 NVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQK 367 (395)
T ss_dssp GGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHH
T ss_pred ChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999987655444 44433
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.6e-48 Score=387.27 Aligned_cols=326 Identities=17% Similarity=0.229 Sum_probs=260.7
Q ss_pred hHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHc
Q 010563 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (507)
Q Consensus 22 l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~ 101 (507)
+++.+.+.|++ +|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++....++||++|+++|+.|+.+.++++
T Consensus 1 l~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 1 MNEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 35788999987 89999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred ----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccEEEEeccccccccCCC
Q 010563 102 ----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVAIDEAHCISSWGHD 176 (507)
Q Consensus 102 ----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~iViDEaH~i~~~g~~ 176 (507)
++.+..+.++......... +. ..+++++||+.+.. .+. .......+++||+||||++.+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~iViDEah~~~~~~-- 145 (337)
T 2z0m_A 80 GRYMDTKVAEVYGGMPYKAQINR---VR----NADIVVATPGRLLD-----LWSKGVIDLSSFEIVIIDEADLMFEMG-- 145 (337)
T ss_dssp TTTSCCCEEEECTTSCHHHHHHH---HT----TCSEEEECHHHHHH-----HHHTTSCCGGGCSEEEEESHHHHHHTT--
T ss_pred hhhcCCcEEEEECCcchHHHHhh---cC----CCCEEEECHHHHHH-----HHHcCCcchhhCcEEEEEChHHhhccc--
Confidence 4677777777665443221 21 26788888886632 111 12234558999999999999988
Q ss_pred CHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHh
Q 010563 177 FRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255 (507)
Q Consensus 177 fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~ 255 (507)
|...+ ..+....+ ..+++++|||+++.....+...+ .++..+......+++.......... .......+..
T Consensus 146 ~~~~~---~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 217 (337)
T 2z0m_A 146 FIDDI---KIILAQTSNRKITGLFSATIPEEIRKVVKDFI--TNYEEIEACIGLANVEHKFVHVKDD---WRSKVQALRE 217 (337)
T ss_dssp CHHHH---HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHS--CSCEEEECSGGGGGEEEEEEECSSS---SHHHHHHHHT
T ss_pred cHHHH---HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhc--CCceeeecccccCCceEEEEEeChH---HHHHHHHHHh
Confidence 55443 44445555 56678899999998877666654 3444554445555665554433221 1223355666
Q ss_pred cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCC
Q 010563 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (507)
Q Consensus 256 ~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~ 335 (507)
..++++||||++++.++.+++.|. .+..+||+++..+|.+++++|++|+.+|||||+++++|+|+|++++||++++
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 293 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA 293 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC
Confidence 777899999999999999999886 5789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 336 p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
|.|+..|+||+||+||.|++|.+++|+. .|...++.+.+
T Consensus 294 ~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 294 PQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp CSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred CCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 9999999999999999999999999999 77666655543
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-49 Score=408.08 Aligned_cols=344 Identities=19% Similarity=0.268 Sum_probs=149.9
Q ss_pred ccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEec
Q 010563 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (507)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~ 85 (507)
.....|+++++++.+.+.|.. +|+.+|+|+|.++++.++.|+++++.+|||+|||++|++|++. ..+++||++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 345668889999999999998 7999999999999999999999999999999999999999874 356899999
Q ss_pred ChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCcc
Q 010563 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLN 160 (507)
Q Consensus 86 P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~ 160 (507)
|+++|+.|+.+.++++ ++.+..+.++........... ..+++++||+.+.. .+. .......++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~i~v~T~~~l~~-----~~~~~~~~~~~~~ 164 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-------DAQIVVGTPGRVFD-----NIQRRRFRTDKIK 164 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-------HCSEEEECHHHHHH-----HHHTTSSCCTTCC
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-------CCCEEEECHHHHHH-----HHHhCCcchhhCc
Confidence 9999999999998874 577777777776654433322 26788888886532 121 223345689
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEecc---CCCCceEEEE
Q 010563 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEV 236 (507)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~~~ni~~~v 236 (507)
+||+||||++.+++ |+..+..+ .... ++.+++++|||+++.....+...+ ..+..+... ...+++....
T Consensus 165 ~vIiDEah~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T 1fuu_A 165 MFILDEADEMLSSG--FKEQIYQI---FTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRILVKKDELTLEGIKQFY 237 (394)
T ss_dssp EEEEETHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEECSSCCHHHHHHHHHHC--CSCEEEEECC------------
T ss_pred EEEEEChHHhhCCC--cHHHHHHH---HHhCCCCceEEEEEEecCHHHHHHHHHhc--CCCeEEEecCccccCCCceEEE
Confidence 99999999999887 77665554 3333 478899999999988776555544 344433222 1222222222
Q ss_pred EeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC
Q 010563 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (507)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (507)
........+...+..+++....+++||||++++.++.+++.|++.|+.+..+||+++..+|..+++.|++|+.+|||||+
T Consensus 238 ~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 317 (394)
T 1fuu_A 238 VNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 317 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 22222233556666677666677899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 317 a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
++++|+|+|++++||++++|.|+..|+||+||+||.|++|.|++|+++.|...++.+.+
T Consensus 318 ~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 318 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877766554
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.4e-47 Score=392.76 Aligned_cols=328 Identities=16% Similarity=0.210 Sum_probs=256.5
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHH
Q 010563 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (507)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~ 99 (507)
.+++.+.+++.||+ +|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .++++||++|+++|+.|+.+.++
T Consensus 7 ~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 7 YEDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 46788899999999 599999999999999999999999999999999999876 67899999999999999999999
Q ss_pred Hc---CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC--
Q 010563 100 EK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-- 174 (507)
Q Consensus 100 ~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g-- 174 (507)
.+ |+++..+.++.....+......+..+. .+|+++||+.+.. +........+++|||||||++++||
T Consensus 86 ~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv~Tp~~l~~------~l~~~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFVSK------NREKLSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEEEEHHHHHH------CHHHHTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEEECHHHHHH------HHHHhccccccEEEEeChHhhhhccch
Confidence 94 789999999998877766677776654 6788888886642 1122445579999999999999887
Q ss_pred -------CCCHHH-HHHHHHHHH------h---CCCCCEEEEeecC-ChhhHHHHHH-HhCCCCCeEEeccCCCCceEEE
Q 010563 175 -------HDFRPS-YRKLSSLRN------Y---LPDVPILALTATA-APKVQKDVME-SLCLQNPLVLKSSFNRPNLFYE 235 (507)
Q Consensus 175 -------~~fr~~-~~~l~~l~~------~---~~~~~~i~lSAT~-~~~~~~~i~~-~l~~~~~~~~~~~~~~~ni~~~ 235 (507)
..|++. +..+..... . .++.+++++|||+ +......+.. .+..... ......+++...
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~ 234 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG---RLVSVARNITHV 234 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS---CCCCCCCSEEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC---ccccccccchhe
Confidence 668887 455544332 1 1578999999994 4443333333 2322111 112233445444
Q ss_pred EEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCcee-EecCCCCHHHHHHHHHHHhcCCceEEEE
Q 010563 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA 314 (507)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~VLVa 314 (507)
+... ++...+.++++.. ++++||||++++.++.+++.|++.|+.+. .|||+ +|+ ++.|++|+++||||
T Consensus 235 ~~~~----~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS----CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc----CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 4333 3345566666663 36899999999999999999999999998 99984 444 99999999999999
Q ss_pred ----eCcccccccCCC-ccEEEEeCCC--CCHHHHHHHhcccCCCC----CCceEEEEeccchHHHHHHHHH
Q 010563 315 ----TVAFGMGIDRKD-VRLVCHFNIP--KSMEAFYQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 315 ----T~a~~~GiD~p~-v~~VI~~~~p--~s~~~y~Q~~GRagR~g----~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
|+++++|||+|+ |++||++++| .|+..|+||+||+||.| ..|.+++++ .|...++.+.+
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~ 373 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKT 373 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHH
Confidence 999999999999 9999999999 99999999999999988 479999999 45544444433
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.1e-48 Score=406.49 Aligned_cols=340 Identities=19% Similarity=0.244 Sum_probs=138.1
Q ss_pred ccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------CCeEEE
Q 010563 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLV 83 (507)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~~lp~l~~------~~~~lv 83 (507)
.+...|+.+++++.+.+.|++ +||..|+|+|.++++.++.+ +++++.||||+|||++|++|++.. .+++||
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~li 167 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 167 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEE
T ss_pred cCcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEE
Confidence 345678889999999999998 79999999999999999987 899999999999999999999853 238999
Q ss_pred ecChHHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhcc
Q 010563 84 VSPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (507)
Q Consensus 84 i~P~~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~ 156 (507)
|+|+++|+.|+.+.++.+ ++.......+..... ......+|+++||+.+.. .+.+ ....
T Consensus 168 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~Ivv~Tp~~l~~-----~l~~~~~~~~ 233 (479)
T 3fmp_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTVLD-----WCSKLKFIDP 233 (479)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT---------TCCCCCSEEEECHHHHHH-----HHTTSCCCCG
T ss_pred EeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc---------cccCCCCEEEECchHHHH-----HHHhcCCcCc
Confidence 999999999998887764 234444433322110 011235788888876521 2211 2233
Q ss_pred CCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCC---CCc
Q 010563 157 GLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPN 231 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~---~~n 231 (507)
..+++|||||||++.+ ++ |...+. .+.... ++.+++++|||++..+.......+ .++..+..... ..+
T Consensus 234 ~~~~~iViDEah~~~~~~~--~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 306 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQG--HQDQSI---RIQRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLDT 306 (479)
T ss_dssp GGCCEEEECCHHHHHTSTT--HHHHHH---HHHTTSCTTSEEEEEESCCCHHHHHHHHHHS--SSEEEEEEC--------
T ss_pred ccCCEEEEECHHHHhhcCC--cHHHHH---HHHhhCCccceEEEEeCCCCHHHHHHHHHHc--CCCeEEeccccccCcCC
Confidence 5689999999999986 44 444333 333443 478999999999998876554443 44444433221 122
Q ss_pred eEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceE
Q 010563 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (507)
Q Consensus 232 i~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (507)
+...+........+...+..++......++||||++++.++.+++.|.+.|+.+..+||+++..+|..+++.|++|+.+|
T Consensus 307 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~i 386 (479)
T 3fmp_B 307 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcE
Confidence 22222222222456666777777666778999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccccCCCccEEEEeCCC------CCHHHHHHHhcccCCCCCCceEEEEeccch-HHHHHHH
Q 010563 312 VVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFI 373 (507)
Q Consensus 312 LVaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d-~~~~~~~ 373 (507)
||||+++++|||+|++++||++++| .+...|+||+|||||.|+.|.|++|+++.+ ...++.+
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i 455 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRI 455 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHH
Confidence 9999999999999999999999999 567899999999999999999999998765 4444444
No 18
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.2e-47 Score=422.16 Aligned_cols=377 Identities=18% Similarity=0.194 Sum_probs=235.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC-----C----CeEEEecChHHHHHHH-HHHHHHcC---Cc
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P----GIVLVVSPLIALMENQ-VIGLKEKG---IA 104 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~-----~----~~~lvi~P~~~L~~q~-~~~l~~~g---i~ 104 (507)
.|||+|.++++.+++|+++++.+|||+|||++|++|++.. . +++|||+|+++|+.|| .+.+++++ +.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 5999999999999999999999999999999999998752 2 7899999999999999 99999865 68
Q ss_pred eEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHH--HHhhhccCCccEEEEeccccccccCCCCHHHHH
Q 010563 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK--LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (507)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~--l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~ 182 (507)
+..++++.......... . ...+|+++||+.+........ .........+++|||||||++.. ++.++....
T Consensus 87 v~~~~g~~~~~~~~~~~---~---~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~-~~~~~~i~~ 159 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEV---V---KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK-EAVYNNIMR 159 (699)
T ss_dssp EEEEC----CCCCHHHH---H---HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT-TBSSCSHHH
T ss_pred EEEEeCCcchhhHHHhh---h---cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc-cchHHHHHH
Confidence 88887665432211111 1 137899999997753211100 11122345589999999999843 333443333
Q ss_pred HHHH--HHHhC---------CCCCEEEEeecCChh-------hHHHH---HHHhCCCCCe-------EEeccCCCCceEE
Q 010563 183 KLSS--LRNYL---------PDVPILALTATAAPK-------VQKDV---MESLCLQNPL-------VLKSSFNRPNLFY 234 (507)
Q Consensus 183 ~l~~--l~~~~---------~~~~~i~lSAT~~~~-------~~~~i---~~~l~~~~~~-------~~~~~~~~~ni~~ 234 (507)
.+.. +.... +..++++||||+... ....+ ...+...... .+.....+|+..+
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 2211 11111 677899999999973 33333 3333331000 0111123344433
Q ss_pred EEEeecch------------------------------------------------------------------------
Q 010563 235 EVRYKDLL------------------------------------------------------------------------ 242 (507)
Q Consensus 235 ~v~~~~~~------------------------------------------------------------------------ 242 (507)
........
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33211000
Q ss_pred ------------------------------------------------------------hhHHHHHHHHH----HhcC-
Q 010563 243 ------------------------------------------------------------DDAYADLCSVL----KANG- 257 (507)
Q Consensus 243 ------------------------------------------------------------~~~~~~l~~~l----~~~~- 257 (507)
..++..|.+++ ...+
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 00011112222 2223
Q ss_pred CccEEEEeccchhHHHHHHHHHhC------CCceeEecCC--------CCHHHHHHHHHHHhcCCceEEEEeCccccccc
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~------g~~~~~~h~~--------l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD 323 (507)
+.++||||++++.++.+++.|++. |+.+..+||+ |+..+|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 678999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHH--------HHHHHHhcccCCCCccchhhhhhH-H
Q 010563 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR--------MEFILSKNQSKNSQSFSTRERSSK-K 394 (507)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~ 394 (507)
+|++++|||||+|+|+..|+||+|||||.| +.+++++..++... .+.++....... +... .+...+ .
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~i 555 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHCV-QNMK-PEEYAHKI 555 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHHT-TSSC-HHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHh-ccCC-HHHHHHHH
Confidence 999999999999999999999999988876 44444444333111 111111111110 1111 122222 2
Q ss_pred HHHHHHHHHHHhccCCchHHHHHhhhCCCCC
Q 010563 395 SISDFSQMVDYCEGSGCRRKKILESFGEQIP 425 (507)
Q Consensus 395 ~~~~~~~~~~~~~~~~Crr~~~~~~f~~~~~ 425 (507)
....+..+..+++...|+++..+.||++...
T Consensus 556 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (699)
T 4gl2_A 556 LELQMQSIMEKKMKTKRNIAKHYKNNPSLIT 586 (699)
T ss_dssp HHHHHHHHHHCCSCCC----------CCSEE
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhcCcceeE
Confidence 2234678889999999999999999998753
No 19
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.4e-45 Score=410.64 Aligned_cols=388 Identities=18% Similarity=0.236 Sum_probs=270.7
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEecChHHHHHHHHHHHHH
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l---~~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
.++...+...|+|+ |+|+|.++|+.+++|+|+++.||||+|||++|++++. ..++++||++|+++|+.|+++.+++
T Consensus 26 ~~l~~~~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 26 DELIPNPARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp HHHCSSCSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHT
T ss_pred hhhhHhHHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 34444455668887 8999999999999999999999999999999888775 3577899999999999999999998
Q ss_pred c--CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCH
Q 010563 101 K--GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (507)
Q Consensus 101 ~--gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (507)
+ ++.+..++++... ....+++|+||+.+....+ ........+++|||||||++++|+ |.
T Consensus 105 ~~~~~~v~~l~G~~~~-------------~~~~~IlV~Tpe~L~~~l~----~~~~~l~~l~lvViDEaH~l~d~~--~g 165 (997)
T 4a4z_A 105 TFDDVNIGLITGDVQI-------------NPDANCLIMTTEILRSMLY----RGADLIRDVEFVIFDEVHYVNDQD--RG 165 (997)
T ss_dssp TC--CCEEEECSSCEE-------------CTTSSEEEEEHHHHHHHHH----HTCSGGGGEEEEEECCTTCCCTTC--TT
T ss_pred HcCCCeEEEEeCCCcc-------------CCCCCEEEECHHHHHHHHH----hCchhhcCCCEEEEECcccccccc--hH
Confidence 5 6688888776531 2347899999997733211 122234568999999999999998 44
Q ss_pred HHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCC---CCCeEEeccCCCCceEEEEEee---------------
Q 010563 179 PSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL---QNPLVLKSSFNRPNLFYEVRYK--------------- 239 (507)
Q Consensus 179 ~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~---~~~~~~~~~~~~~ni~~~v~~~--------------- 239 (507)
..+..+ ...+ +++++++||||+++.. ++..+++. ....++.......++.+.+...
T Consensus 166 ~~~e~i---i~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~ 240 (997)
T 4a4z_A 166 VVWEEV---IIMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLE 240 (997)
T ss_dssp CCHHHH---HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCH
T ss_pred HHHHHH---HHhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhH
Confidence 444443 3334 4799999999987653 44555542 2222333333322332222100
Q ss_pred -----------------------------------------------------------------------------cch
Q 010563 240 -----------------------------------------------------------------------------DLL 242 (507)
Q Consensus 240 -----------------------------------------------------------------------------~~~ 242 (507)
...
T Consensus 241 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (997)
T 4a4z_A 241 ANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPS 320 (997)
T ss_dssp HHHHHHHHHHC-----------------------------------------------------------------CCCC
T ss_pred HHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 001
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCC---------------------------------------
Q 010563 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI--------------------------------------- 283 (507)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~--------------------------------------- 283 (507)
...+..+...+......++||||+|++.|+.++..|.+.|+
T Consensus 321 ~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 400 (997)
T 4a4z_A 321 KKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLER 400 (997)
T ss_dssp TTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhc
Confidence 23455677777777778999999999999999999987665
Q ss_pred ceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCC---------CHHHHHHHhcccCCCC-
Q 010563 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRDQ- 353 (507)
Q Consensus 284 ~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~---------s~~~y~Q~~GRagR~g- 353 (507)
.+..|||+|++.+|..+++.|.+|.++|||||+++++|||+|+ +.||++++|+ |+.+|+||+|||||.|
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~ 479 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL 479 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTT
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCC
Confidence 4789999999999999999999999999999999999999999 7777777776 9999999999999998
Q ss_pred -CCceEEEEe--ccchHHHHHHHHHhcccCCCCccc-hhhh---hhHHHHHHHHHHHHHh------ccCCchHHHHHhhh
Q 010563 354 -LPSKSLLYY--GMDDRRRMEFILSKNQSKNSQSFS-TRER---SSKKSISDFSQMVDYC------EGSGCRRKKILESF 420 (507)
Q Consensus 354 -~~~~~i~~~--~~~d~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~------~~~~Crr~~~~~~f 420 (507)
..|.|++++ ...+...++.++..........+. .... ..+.....++.|+.++ +...|++...+.+|
T Consensus 480 ~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~~l 559 (997)
T 4a4z_A 480 DSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVL 559 (997)
T ss_dssp CSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467788887 345667777776644332211110 0000 0011112344555554 44679999999999
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 010563 421 GEQIPVSLCKNSCDACKH 438 (507)
Q Consensus 421 ~~~~~~~~c~~~Cd~c~~ 438 (507)
++......|. .||+|..
T Consensus 560 ~~~~~~~~~~-~c~~c~~ 576 (997)
T 4a4z_A 560 QEELQTIEYK-SCEICDN 576 (997)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHhhhh-ccccccc
Confidence 8875444566 6999964
No 20
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-46 Score=396.49 Aligned_cols=339 Identities=17% Similarity=0.246 Sum_probs=219.1
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------CCeEEEecChH
Q 010563 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (507)
Q Consensus 17 ~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P~~ 88 (507)
+.+..+.+.+.+.+.+ .|+..|+++|.++++.+++| +++++.+|||+|||++|++|++.. .+++||++|++
T Consensus 121 ~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 4455667788888887 59999999999999999998 899999999999999999988742 45899999999
Q ss_pred HHHHHHHHHHHHcCCceEE-ecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH-HhhhccCCccEEEEec
Q 010563 89 ALMENQVIGLKEKGIAGEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDE 166 (507)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~~~~~~~~l~~iViDE 166 (507)
+|+.|+.+.+++++..... .......... .......+++++||+.+.. .+ ........+++|||||
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~T~~~l~~-----~l~~~~~~~~~~~lIIiDE 267 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVP-------KGAKIDAQIVIGTPGTVMD-----LMKRRQLDARDIKVFVLDE 267 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC-----------------CCCCSEEEECHHHHHH-----HHHTTCSCCTTCCEEEECC
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCccc-------ccccCCCCEEEECHHHHHH-----HHHcCCccccCCCEEEEec
Confidence 9999999999996422110 1111110000 0111247888888887633 11 1222356689999999
Q ss_pred cccccc-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEec---cCCCCceEEEEEeecc
Q 010563 167 AHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKDL 241 (507)
Q Consensus 167 aH~i~~-~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~---~~~~~ni~~~v~~~~~ 241 (507)
||++++ ++ |...+..+ ...++ +.+++++|||+++.........+ .++..+.. ....+++.........
T Consensus 268 aH~~~~~~~--~~~~~~~i---~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~ 340 (508)
T 3fho_A 268 ADNMLDQQG--LGDQSMRI---KHLLPRNTQIVLFSATFSERVEKYAERFA--PNANEIRLKTEELSVEGIKQLYMDCQS 340 (508)
T ss_dssp HHHHTTC----CHHHHHHH---HHHSCTTCEEEEEESCCSTHHHHHHHHHS--TTCEEECCCCCC----CCCCEEEEC--
T ss_pred hhhhcccCC--cHHHHHHH---HHhCCcCCeEEEEeCCCCHHHHHHHHHhc--CCCeEEEeccccCCcccceEEEEECCc
Confidence 999987 44 66555444 34343 78899999999987766444433 23333322 1222333333333333
Q ss_pred hhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccccc
Q 010563 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (507)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (507)
...+...+..++.....+++||||++++.++.++..|.+.|+.+..+||+++..+|..+++.|++|+.+|||||+++++|
T Consensus 341 ~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~G 420 (508)
T 3fho_A 341 EEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 420 (508)
T ss_dssp CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcC
Confidence 45677778888877777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEeCCC------CCHHHHHHHhcccCCCCCCceEEEEeccc-hHHHHHHHHH
Q 010563 322 IDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILS 375 (507)
Q Consensus 322 iD~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~g~~~~~i~~~~~~-d~~~~~~~~~ 375 (507)
||+|++++||++++| .|+..|+||+||+||.|++|.|++|+... +...++.+.+
T Consensus 421 iDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~ 481 (508)
T 3fho_A 421 IDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQE 481 (508)
T ss_dssp CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHH
T ss_pred CCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHH
Confidence 999999999999999 89999999999999999999999999843 4444544444
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.5e-45 Score=402.24 Aligned_cols=327 Identities=20% Similarity=0.265 Sum_probs=203.8
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEecChHHHHHHHHHHHH
Q 010563 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLK 99 (507)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~--------~~~~lvi~P~~~L~~q~~~~l~ 99 (507)
..|.. +|+..|||+|.+++++++.|+|+++.+|||+|||++|++|++.. .+++|||+|+++|+.||.+.++
T Consensus 4 ~~l~~-~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 4 SDTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ---CT-TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred Ccccc-cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 34555 79999999999999999999999999999999999999998732 2789999999999999999999
Q ss_pred Hc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhh-h-ccCCccEEEEecccccccc
Q 010563 100 EK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-H-SRGLLNLVAIDEAHCISSW 173 (507)
Q Consensus 100 ~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~-~-~~~~l~~iViDEaH~i~~~ 173 (507)
++ ++.+..+.++......... +.. ..+|+++||+.+.. .+... . ....+++|||||||+++.+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~---~~~---~~~Iiv~Tp~~L~~-----~l~~~~~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQ---IVE---NNDIIILTPQILVN-----NLKKGTIPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHH---HHH---TCSEEEECHHHHHH-----HHHTTSSCCGGGCSEEEEETGGGCSTT
T ss_pred HHhccCCceEEEEeCCccccccHHH---hcc---CCCEEEECHHHHHH-----HHhcCcccccccccEEEEeCCCcccCc
Confidence 86 7888888876643221111 111 27899999887633 22211 1 3455899999999999865
Q ss_pred CCCCHHHHHHHHHHHHh-----CCCCCEEEEeecCC-------hhhHHHHHHHhCCCCCeEEeccC----------CCCc
Q 010563 174 GHDFRPSYRKLSSLRNY-----LPDVPILALTATAA-------PKVQKDVMESLCLQNPLVLKSSF----------NRPN 231 (507)
Q Consensus 174 g~~fr~~~~~l~~l~~~-----~~~~~~i~lSAT~~-------~~~~~~i~~~l~~~~~~~~~~~~----------~~~n 231 (507)
. .++..... .+... .+..++++||||+. ......+...+...+...+.... ..|.
T Consensus 152 ~-~~~~i~~~--~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~ 228 (696)
T 2ykg_A 152 H-PYNMIMFN--YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQ 228 (696)
T ss_dssp C-HHHHHHHH--HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCE
T ss_pred c-cHHHHHHH--HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCc
Confidence 3 22222211 12221 25678999999998 44445554443211111111000 0000
Q ss_pred eEEEEE---------------------------------------------------------------e----------
Q 010563 232 LFYEVR---------------------------------------------------------------Y---------- 238 (507)
Q Consensus 232 i~~~v~---------------------------------------------------------------~---------- 238 (507)
..+... .
T Consensus 229 ~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (696)
T 2ykg_A 229 KFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 308 (696)
T ss_dssp EEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHH
T ss_pred eeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHH
Confidence 000000 0
Q ss_pred ------------------------------------------------------------------ecchhhHHHHHHHH
Q 010563 239 ------------------------------------------------------------------KDLLDDAYADLCSV 252 (507)
Q Consensus 239 ------------------------------------------------------------------~~~~~~~~~~l~~~ 252 (507)
......+...|.++
T Consensus 309 l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~l 388 (696)
T 2ykg_A 309 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 388 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 00012355566666
Q ss_pred HHhc----CCccEEEEeccchhHHHHHHHHHhCC----CceeEe--------cCCCCHHHHHHHHHHHhc-CCceEEEEe
Q 010563 253 LKAN----GDTCAIVYCLERTTCDELSAYLSAGG----ISCAAY--------HAGLNDKARSSVLDDWIS-SRKQVVVAT 315 (507)
Q Consensus 253 l~~~----~~~~~IVf~~s~~~~~~l~~~L~~~g----~~~~~~--------h~~l~~~~R~~~~~~f~~-g~~~VLVaT 315 (507)
+... .+.++||||++++.++.+++.|++.| +.+..+ ||+|+.++|.+++++|++ |+.+|||||
T Consensus 389 l~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT 468 (696)
T 2ykg_A 389 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 468 (696)
T ss_dssp HHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEE
T ss_pred HHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEe
Confidence 6554 56789999999999999999999988 888888 569999999999999998 999999999
Q ss_pred CcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHH
Q 010563 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (507)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~ 371 (507)
+++++|||+|++++|||||+|.|++.|+||+|| ||. ++|.++++++..+.....
T Consensus 469 ~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 469 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp ESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHH
T ss_pred chhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHH
Confidence 999999999999999999999999999999999 998 689999999988875444
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.6e-42 Score=380.90 Aligned_cols=328 Identities=22% Similarity=0.245 Sum_probs=248.1
Q ss_pred CCCCC--hHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEecChHHHH
Q 010563 17 NKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALM 91 (507)
Q Consensus 17 ~~~~~--l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l---~~~~~~lvi~P~~~L~ 91 (507)
|++++ +++.+.+.+++ +||.+|+|+|.++++.+..++++++.+|||+|||++|.+|++ ..+++++|++|+++|+
T Consensus 3 f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 3 VEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp SHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred hhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 55566 88899999988 899999999999999999999999999999999999999887 4578999999999999
Q ss_pred HHHHHHHHH---cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhh-hccCCccEEEEecc
Q 010563 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDEA 167 (507)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~-~~~~~l~~iViDEa 167 (507)
.|+++.++. +|+++..+.+....... .....+|+++|||.+.. .+.+. .....+++||||||
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l~~-----~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 82 GEKYESFKKWEKIGLRIGISTGDYESRDE---------HLGDCDIIVTTSEKADS-----LIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp HHHHHHHTTTTTTTCCEEEECSSCBCCSS---------CSTTCSEEEEEHHHHHH-----HHHTTCSGGGGCCEEEETTG
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCcchh---------hccCCCEEEECHHHHHH-----HHHcChhHHhhcCEEEEeee
Confidence 999999854 47788777765432211 11247899999987632 12221 11456899999999
Q ss_pred ccccccCCCCHHHHHHH-HHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEE------eec
Q 010563 168 HCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YKD 240 (507)
Q Consensus 168 H~i~~~g~~fr~~~~~l-~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~------~~~ 240 (507)
|++.+|+ +.+.+..+ ..++...++.++++||||+++ ..++..+++. ..+..+...-.+...+. ..+
T Consensus 148 H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 148 HLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDA---DYYVSDWRPVPLVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTC---EEEECCCCSSCEEEEEECSSEEEEEE
T ss_pred eecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCC---CcccCCCCCccceEEEeeCCeeeccC
Confidence 9999876 44444443 344445578999999999985 3567777752 23322222211211111 000
Q ss_pred ------chhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC------------------------------CCc
Q 010563 241 ------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------------GIS 284 (507)
Q Consensus 241 ------~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~------------------------------g~~ 284 (507)
........+.+.+. .++++||||+++++++.++..|.+. +..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 298 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG 298 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred cchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcC
Confidence 00114555555554 3568999999999999999998753 135
Q ss_pred eeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEE----eC---CCCCHHHHHHHhcccCCCC--CC
Q 010563 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN---IPKSMEAFYQESGRAGRDQ--LP 355 (507)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----~~---~p~s~~~y~Q~~GRagR~g--~~ 355 (507)
+..+||+|++++|..+++.|.+|+++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.| .+
T Consensus 299 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 299 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred eEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 788999999999999999999999999999999999999999999999 66 7899999999999999998 48
Q ss_pred ceEEEEeccchHH
Q 010563 356 SKSLLYYGMDDRR 368 (507)
Q Consensus 356 ~~~i~~~~~~d~~ 368 (507)
|.|+++++..+..
T Consensus 379 G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 379 GEAIIIVGKRDRE 391 (702)
T ss_dssp EEEEEECCGGGHH
T ss_pred ceEEEEecCccHH
Confidence 8999999988844
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.1e-42 Score=370.05 Aligned_cols=320 Identities=19% Similarity=0.259 Sum_probs=185.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEecChHHHHHHHHHHHHHc----C
Q 010563 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----G 102 (507)
Q Consensus 35 g~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~--------~~~~lvi~P~~~L~~q~~~~l~~~----g 102 (507)
+.-+|||+|.++++.++.|+++++.+|||+|||++|++|++.. .+++|||+|+++|+.|+.+.++++ +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4456999999999999999999999999999999999998743 778999999999999999999986 8
Q ss_pred CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh-hh-ccCCccEEEEeccccccccCCCCHHH
Q 010563 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHDFRPS 180 (507)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~-~~-~~~~l~~iViDEaH~i~~~g~~fr~~ 180 (507)
+.+..+.++.......... .. ..+|+++||+.+.. .+.. .. ....+++|||||||++.+|+. +...
T Consensus 84 ~~~~~~~g~~~~~~~~~~~---~~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~ 151 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKV---IE---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVL 151 (556)
T ss_dssp CCEEECCCC-----CHHHH---HH---HCSEEEECHHHHHH-----HHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHH
T ss_pred ceEEEEeCCCCcchhHHHh---hC---CCCEEEECHHHHHH-----HHHhCcccccccCCEEEEECCcccCCcch-HHHH
Confidence 8888888776443322111 11 26788888886532 2221 12 456689999999999998873 2222
Q ss_pred HHHHHHHHHh----CCCCCEEEEeecCChh----------hHHHHHHHhCCCCCeE-------EeccCCCCceEEEEEee
Q 010563 181 YRKLSSLRNY----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRYK 239 (507)
Q Consensus 181 ~~~l~~l~~~----~~~~~~i~lSAT~~~~----------~~~~i~~~l~~~~~~~-------~~~~~~~~ni~~~v~~~ 239 (507)
... .+... .+..++++||||+... ....+...++...... +.....++...+.....
T Consensus 152 ~~~--~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (556)
T 4a2p_A 152 MTR--YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR 229 (556)
T ss_dssp HHH--HHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC
T ss_pred HHH--HHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC
Confidence 111 11111 3568899999999642 2222334443210000 00011222222211110
Q ss_pred ---c----------------------------------------------------------------------------
Q 010563 240 ---D---------------------------------------------------------------------------- 240 (507)
Q Consensus 240 ---~---------------------------------------------------------------------------- 240 (507)
+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (556)
T 4a2p_A 230 RIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLR 309 (556)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -----------------------------------------------------------chhhHHHHHHHHHHh----cC
Q 010563 241 -----------------------------------------------------------LLDDAYADLCSVLKA----NG 257 (507)
Q Consensus 241 -----------------------------------------------------------~~~~~~~~l~~~l~~----~~ 257 (507)
....++..|.+++.. ..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~ 389 (556)
T 4a2p_A 310 KYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP 389 (556)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCC
Confidence 001244445555543 45
Q ss_pred CccEEEEeccchhHHHHHHHHHhC------------CCceeEecCCCCHHHHHHHHHHHhc-CCceEEEEeCcccccccC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGIDR 324 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a~~~GiD~ 324 (507)
+.++||||++++.++.+++.|++. |.....+||+|+.++|..++++|++ |+++|||||+++++|||+
T Consensus 390 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDi 469 (556)
T 4a2p_A 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 469 (556)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC--------
T ss_pred CceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCc
Confidence 679999999999999999999876 5556677889999999999999999 999999999999999999
Q ss_pred CCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHH
Q 010563 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (507)
Q Consensus 325 p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~ 370 (507)
|++++|||||+|+|+..|+||+|| ||. ++|.++++++..+....
T Consensus 470 p~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 470 VQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp ---CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 999999999999999999999999 999 78999999998876443
No 24
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-41 Score=374.17 Aligned_cols=324 Identities=20% Similarity=0.257 Sum_probs=244.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHH
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~-i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L 90 (507)
.|+++++++.+.+.+++ +||.+|+|+|.++++. +.+++++++++|||+|||++|.++++. .+++++|++|+++|
T Consensus 9 ~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 9 PIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp BGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred cHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 47788899999999988 8999999999999999 778999999999999999999998862 57899999999999
Q ss_pred HHHHHHHHHH---cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh-hhccCCccEEEEec
Q 010563 91 MENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDE 166 (507)
Q Consensus 91 ~~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~-~~~~~~l~~iViDE 166 (507)
+.|+++.++. +|+++..+.+....... .+ ...+|+++|||.+.. .+.+ ......+++|||||
T Consensus 88 a~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l~~-----~~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 88 TNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL----KNYDIIITTYEKLDS-----LWRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp HHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG----GGCSEEEECHHHHHH-----HHHHCCGGGGGEEEEEECS
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc----CCCCEEEEcHHHHHH-----HHhCChhHhhccCEEEEec
Confidence 9999999854 47788777665433221 11 147899999987633 1111 11245689999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceE------------E
Q 010563 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF------------Y 234 (507)
Q Consensus 167 aH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~------------~ 234 (507)
||++.+++ +.+.+..+ ....++.++++||||+++. .++..+++. ..+..+.....+. +
T Consensus 154 ~H~l~~~~--~~~~l~~i---~~~~~~~~ii~lSATl~n~--~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 154 LHYLNDPE--RGPVVESV---TIRAKRRNLLALSATISNY--KQIAKWLGA---EPVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp GGGGGCTT--THHHHHHH---HHHHHTSEEEEEESCCTTH--HHHHHHHTC---EEEECCCCSSCEEEEEEEECSSTTEE
T ss_pred hhhcCCcc--cchHHHHH---HHhcccCcEEEEcCCCCCH--HHHHHHhCC---CccCCCCCCCCceEEEEecCCcccce
Confidence 99998755 44444433 3333488999999999853 566777753 2222221111111 1
Q ss_pred EEEeec-------chhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCC-------------------------
Q 010563 235 EVRYKD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG------------------------- 282 (507)
Q Consensus 235 ~v~~~~-------~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g------------------------- 282 (507)
.+...+ ........+.+.+. .++++||||+++++++.++..|.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred eeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 111111 01344555555554 45689999999999999999998642
Q ss_pred -----------CceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEE----eC-------CCCCHH
Q 010563 283 -----------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-------IPKSME 340 (507)
Q Consensus 283 -----------~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----~~-------~p~s~~ 340 (507)
..+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||+ |+ .|.|..
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~ 381 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIM 381 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHH
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHH
Confidence 24889999999999999999999999999999999999999999999999 98 899999
Q ss_pred HHHHHhcccCCCCC--CceEEEEeccch
Q 010563 341 AFYQESGRAGRDQL--PSKSLLYYGMDD 366 (507)
Q Consensus 341 ~y~Q~~GRagR~g~--~~~~i~~~~~~d 366 (507)
+|.||+|||||.|. +|.|+++++..+
T Consensus 382 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 382 EYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999984 799999998776
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-42 Score=393.44 Aligned_cols=340 Identities=16% Similarity=0.117 Sum_probs=245.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHH
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~ 92 (507)
.+...++.+.+...+...|+|. |+|+|.++|+++..|++++++||||+|||++|++|++. .+++++|++|+++|+.
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~-ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~ 241 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSN 241 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSC-CCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CcccCCCChhhhHHHHHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHH
Confidence 4555666666655666655554 99999999999999999999999999999999999875 5889999999999999
Q ss_pred HHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 010563 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (507)
Q Consensus 93 q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (507)
|+.+.+++....+..+.+... .....+++++||+++...-+ ........+++|||||||++.+
T Consensus 242 Q~~~~l~~~~~~VglltGd~~-------------~~~~~~IlV~Tpe~L~~~L~----~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 242 QKYRELLAEFGDVGLMTGDIT-------------INPDAGCLVMTTEILRSMLY----RGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp HHHHHHHHHTSSEEEECSSCB-------------CCCSCSEEEEEHHHHHHHHH----HCSSHHHHEEEEEEETGGGTTS
T ss_pred HHHHHHHHHhCCccEEeCccc-------------cCCCCCEEEeChHHHHHHHH----cCccccccCCEEEEhhhhhccc
Confidence 999999996667777776554 12347899999986643111 1111133489999999999998
Q ss_pred cCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhh-HHHHHHHhCCCCCeEEeccCCCCceEEEEEee-----------
Q 010563 173 WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKV-QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK----------- 239 (507)
Q Consensus 173 ~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~-~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~----------- 239 (507)
|+ |...+..+ ...+ +++++++||||++... ...+..........++........+...+...
T Consensus 305 ~~--rg~~~e~i---i~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 305 KE--RGVVWEET---IILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp HH--HHHHHHHH---HHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEET
T ss_pred cc--hHHHHHHH---HHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeecc
Confidence 87 55555444 3333 4789999999987642 12222222222222333322222222111100
Q ss_pred -cc------------------------------------------hhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHH
Q 010563 240 -DL------------------------------------------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSA 276 (507)
Q Consensus 240 -~~------------------------------------------~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~ 276 (507)
.. ....+..+...+...+..++||||++++.|+.++.
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~ 459 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELAL 459 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHH
Confidence 00 02233345555555667789999999999999999
Q ss_pred HHHhCCCc---------------------------------------eeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc
Q 010563 277 YLSAGGIS---------------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (507)
Q Consensus 277 ~L~~~g~~---------------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (507)
.|...++. +..+||+|++.+|..+++.|.+|.++|||||++
T Consensus 460 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~v 539 (1108)
T 3l9o_A 460 KMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATET 539 (1108)
T ss_dssp HTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcH
Confidence 98653322 789999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEeCC--------CCCHHHHHHHhcccCCCC--CCceEEEEeccc-hHHHHHHHHHhcc
Q 010563 318 FGMGIDRKDVRLVCHFNI--------PKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD-DRRRMEFILSKNQ 378 (507)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~--------p~s~~~y~Q~~GRagR~g--~~~~~i~~~~~~-d~~~~~~~~~~~~ 378 (507)
+++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.|++++++. +...+..++....
T Consensus 540 la~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~ 611 (1108)
T 3l9o_A 540 FSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQA 611 (1108)
T ss_dssp CCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCC
T ss_pred HhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCC
Confidence 999999999999997665 348889999999999999 688999998866 5556666666443
No 26
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.7e-42 Score=388.00 Aligned_cols=318 Identities=19% Similarity=0.259 Sum_probs=192.4
Q ss_pred hcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEecChHHHHHHHHHHHHHc---
Q 010563 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK--- 101 (507)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~--------~~~~lvi~P~~~L~~q~~~~l~~~--- 101 (507)
.+|+..|||+|.++++.++.|+++++.+|||+|||++|++|++.. .+++|||+|+++|+.|+.+.++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999999999999999999764 778999999999999999999885
Q ss_pred -CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh-hh-ccCCccEEEEeccccccccCCCCH
Q 010563 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHDFR 178 (507)
Q Consensus 102 -gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~-~~-~~~~l~~iViDEaH~i~~~g~~fr 178 (507)
++++..++++........... . ..+|+++||+.+.. .+.. .. ....+++|||||||++...+. ++
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~---~---~~~IvI~Tp~~L~~-----~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~ 390 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVI---E---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP-YN 390 (936)
T ss_dssp TTCCEEEECCC-----CCHHHH---H---HCSEEEECHHHHHH-----HHHSSSCCCGGGCSEEEEETGGGCSTTCH-HH
T ss_pred cCceEEEEECCcchhhHHHHhc---c---CCCEEEecHHHHHH-----HHHcCccccccCCCEEEEECccccCCCcc-HH
Confidence 889988888765433211111 1 26788888887532 2211 11 344589999999999987542 33
Q ss_pred HHHHHHHHHHHh-----CCCCCEEEEeecCCh----------hhHHHHHHHhCCCCCeEEe---------ccCCCCceEE
Q 010563 179 PSYRKLSSLRNY-----LPDVPILALTATAAP----------KVQKDVMESLCLQNPLVLK---------SSFNRPNLFY 234 (507)
Q Consensus 179 ~~~~~l~~l~~~-----~~~~~~i~lSAT~~~----------~~~~~i~~~l~~~~~~~~~---------~~~~~~ni~~ 234 (507)
.... .+... .+..++++||||+.. .....+...++.. .+.. ....++...+
T Consensus 391 ~i~~---~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~--~i~~~~~~~~~l~~~~~~p~~~~ 465 (936)
T 4a2w_A 391 VLMT---RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDV 465 (936)
T ss_dssp HHHH---HHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHSCCCCEEE
T ss_pred HHHH---HHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc--eeecccccHHHHHHhccCCcceE
Confidence 2222 22222 456789999999963 2222333344321 1110 0112222222
Q ss_pred EEEee---------------------------------------c-----------------------------------
Q 010563 235 EVRYK---------------------------------------D----------------------------------- 240 (507)
Q Consensus 235 ~v~~~---------------------------------------~----------------------------------- 240 (507)
..... .
T Consensus 466 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~ 545 (936)
T 4a2w_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC 545 (936)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred EecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 11110 0
Q ss_pred ----------------------------------------------------------------chhhHHHHHHHHHHh-
Q 010563 241 ----------------------------------------------------------------LLDDAYADLCSVLKA- 255 (507)
Q Consensus 241 ----------------------------------------------------------------~~~~~~~~l~~~l~~- 255 (507)
....++..|.+++..
T Consensus 546 ~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~ 625 (936)
T 4a2w_A 546 TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 625 (936)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Confidence 001233444555544
Q ss_pred ---cCCccEEEEeccchhHHHHHHHHHhC------------CCceeEecCCCCHHHHHHHHHHHhc-CCceEEEEeCccc
Q 010563 256 ---NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFG 319 (507)
Q Consensus 256 ---~~~~~~IVf~~s~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a~~ 319 (507)
..+.++||||++++.++.+++.|.+. |.....+||+|+..+|.+++++|++ |+++|||||++++
T Consensus 626 ~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~ 705 (936)
T 4a2w_A 626 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD 705 (936)
T ss_dssp TTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC--
T ss_pred hccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchh
Confidence 35678999999999999999999986 5556677999999999999999998 9999999999999
Q ss_pred ccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 010563 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (507)
Q Consensus 320 ~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~ 369 (507)
+|||+|+|++|||||+|+|+..|+||+|| ||. .+|.++++++..+...
T Consensus 706 eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp ----CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred cCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 99999999999999999999999999999 999 6899999998876543
No 27
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7.6e-42 Score=376.45 Aligned_cols=326 Identities=21% Similarity=0.264 Sum_probs=248.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHH
Q 010563 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (507)
Q Consensus 17 ~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~-i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~ 91 (507)
|+.+++++.+.+.+++ +|+..|+|+|.++++. +..++++++++|||+|||++|.+|++. .+++++|++|+++|+
T Consensus 3 f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 3 VDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp GGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 6678899999999998 8999999999999998 889999999999999999999998873 478999999999999
Q ss_pred HHHHHHHHH---cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh-hhccCCccEEEEecc
Q 010563 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEA 167 (507)
Q Consensus 92 ~q~~~~l~~---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~-~~~~~~l~~iViDEa 167 (507)
.|++++++. +|+++..+.+....... .. ...+|+++|||.+.. .+.+ ......+++||||||
T Consensus 82 ~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l~~-----~~~~~~~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 82 EEKFQEFQDWEKIGLRVAMATGDYDSKDE-----WL----GKYDIIIATAEKFDS-----LLRHGSSWIKDVKILVADEI 147 (720)
T ss_dssp HHHHHHTGGGGGGTCCEEEECSCSSCCCG-----GG----GGCSEEEECHHHHHH-----HHHHTCTTGGGEEEEEEETG
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCcccc-----cc----CCCCEEEECHHHHHH-----HHHcChhhhhcCCEEEEECC
Confidence 999999864 57888887765433211 01 147899999987632 1111 112456899999999
Q ss_pred ccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEE------eec-
Q 010563 168 HCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YKD- 240 (507)
Q Consensus 168 H~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~------~~~- 240 (507)
|++.+++ +.+.+..+..... ++.++++||||+++. .++..+++. ..+..+.....+...+. ..+
T Consensus 148 H~l~~~~--r~~~~~~ll~~l~--~~~~ii~lSATl~n~--~~~~~~l~~---~~~~~~~rp~~l~~~~~~~~~~~~~~~ 218 (720)
T 2zj8_A 148 HLIGSRD--RGATLEVILAHML--GKAQIIGLSATIGNP--EELAEWLNA---ELIVSDWRPVKLRRGVFYQGFVTWEDG 218 (720)
T ss_dssp GGGGCTT--THHHHHHHHHHHB--TTBEEEEEECCCSCH--HHHHHHTTE---EEEECCCCSSEEEEEEEETTEEEETTS
T ss_pred cccCCCc--ccHHHHHHHHHhh--cCCeEEEEcCCcCCH--HHHHHHhCC---cccCCCCCCCcceEEEEeCCeeecccc
Confidence 9998765 4444444322222 278999999999763 566777752 12222221111111111 100
Q ss_pred ---chhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC------------------C---------------Cc
Q 010563 241 ---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------G---------------IS 284 (507)
Q Consensus 241 ---~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~------------------g---------------~~ 284 (507)
........+.+.+.. ++++||||++++.++.++..|.+. + ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 296 (720)
T 2zj8_A 219 SIDRFSSWEELVYDAIRK--KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGG 296 (720)
T ss_dssp CEEECSSTTHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTT
T ss_pred chhhhhHHHHHHHHHHhC--CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcC
Confidence 012344555555543 468999999999999999999753 1 24
Q ss_pred eeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEE----eC----CCCCHHHHHHHhcccCCCC--C
Q 010563 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN----IPKSMEAFYQESGRAGRDQ--L 354 (507)
Q Consensus 285 ~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----~~----~p~s~~~y~Q~~GRagR~g--~ 354 (507)
+..+||+|+.++|..+++.|++|+++|||||+++++|||+|++++||+ |+ .|.|..+|.||+|||||.| .
T Consensus 297 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~ 376 (720)
T 2zj8_A 297 VAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDE 376 (720)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCS
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCC
Confidence 899999999999999999999999999999999999999999999998 66 5899999999999999998 4
Q ss_pred CceEEEEeccchHH
Q 010563 355 PSKSLLYYGMDDRR 368 (507)
Q Consensus 355 ~~~~i~~~~~~d~~ 368 (507)
+|.|+++++..+..
T Consensus 377 ~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 377 VGEGIIVSTSDDPR 390 (720)
T ss_dssp EEEEEEECSSSCHH
T ss_pred CceEEEEecCccHH
Confidence 78899999988744
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.6e-41 Score=383.12 Aligned_cols=291 Identities=15% Similarity=0.200 Sum_probs=222.3
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
+.+.+.++..+|| +|+|+|.++++.+++|+|++++||||+|||++|+++++. .++++||++||++|+.|+.+.+++
T Consensus 65 ~~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 65 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HHHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH
Confidence 3455677777899 499999999999999999999999999999998888765 678999999999999999999999
Q ss_pred ---cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC---
Q 010563 101 ---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--- 174 (507)
Q Consensus 101 ---~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g--- 174 (507)
.++++..++++.+..++......+..+. .+|+++||+.+.. +........+++|||||||+++.++
T Consensus 144 l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~--~~IlV~Tp~rL~~------~l~~l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 144 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFVSK------NREKLSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp TSCTTSCEEEECTTCCTTHHHHHHHHHHTSC--CSEEEEEHHHHHH------SHHHHHTSCCSEEEESCHHHHTTSSHHH
T ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC--CCEEEECHHHHHH------HHHhhcccCcCEEEEeCCCccccccccc
Confidence 4678899999888766666666776654 6788888876532 2122445679999999999987632
Q ss_pred ------CCCHHH-HHHHHHHHH------hC---CCCCEEEEeecCCh-hhHHHHHH-HhCCCCCeEEeccCCCCceEEEE
Q 010563 175 ------HDFRPS-YRKLSSLRN------YL---PDVPILALTATAAP-KVQKDVME-SLCLQNPLVLKSSFNRPNLFYEV 236 (507)
Q Consensus 175 ------~~fr~~-~~~l~~l~~------~~---~~~~~i~lSAT~~~-~~~~~i~~-~l~~~~~~~~~~~~~~~ni~~~v 236 (507)
..|.+. +..+..... .+ ++.+++++|||+.+ .+...+.. .+.+ .+.......+++...+
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i---~v~~~~~~~~~i~~~~ 292 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF---TVGRLVSVARNITHVR 292 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCC---CCCBCCCCCCCEEEEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeE---EeccCCCCcCCceeEE
Confidence 226665 555444332 01 46899999999544 33323333 2221 1112233455665555
Q ss_pred EeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCcee-EecCCCCHHHHHHHHHHHhcCCceEEEE-
Q 010563 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA- 314 (507)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~-~~h~~l~~~~R~~~~~~f~~g~~~VLVa- 314 (507)
... ++...|.++++..+ +++||||++++.++.++..|++.|+.+. .+|| +|++ +++|++|+++||||
T Consensus 293 ~~~----~k~~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVat 361 (1104)
T 4ddu_A 293 ISS----RSKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGV 361 (1104)
T ss_dssp ESC----CCHHHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEE
T ss_pred Eec----CHHHHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEe
Confidence 443 34455666666643 6899999999999999999999999998 9999 2555 99999999999999
Q ss_pred ---eCcccccccCCC-ccEEEEeCCCC
Q 010563 315 ---TVAFGMGIDRKD-VRLVCHFNIPK 337 (507)
Q Consensus 315 ---T~a~~~GiD~p~-v~~VI~~~~p~ 337 (507)
|+++++|||+|+ |++|||||+|.
T Consensus 362 as~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 362 QAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred cCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 29
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.1e-41 Score=361.98 Aligned_cols=316 Identities=20% Similarity=0.246 Sum_probs=209.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEecChHHHHHHHHHHHHHc----CCce
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----GIAG 105 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~--------~~~~lvi~P~~~L~~q~~~~l~~~----gi~~ 105 (507)
+|||+|.++++.++.|+++++.+|||+|||++|++|++.. .+++|||+|+++|+.|+.+.++++ ++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5899999999999999999999999999999999998743 778999999999999999999886 8888
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh-hh-ccCCccEEEEeccccccccCCCCHHHHHH
Q 010563 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (507)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~-~~-~~~~l~~iViDEaH~i~~~g~~fr~~~~~ 183 (507)
..+.++.......... .. ..+++++||+.+.. .+.. .. ....+++|||||||++..++. ++.....
T Consensus 84 ~~~~g~~~~~~~~~~~---~~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~ 151 (555)
T 3tbk_A 84 ASISGATSDSVSVQHI---IE---DNDIIILTPQILVN-----NLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFR 151 (555)
T ss_dssp EEECTTTGGGSCHHHH---HH---HCSEEEECHHHHHH-----HHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHH
T ss_pred EEEcCCCcchhhHHHH---hc---CCCEEEECHHHHHH-----HHhcCcccccccCCEEEEECccccCCcch-HHHHHHH
Confidence 8888776443321111 11 26788888887532 2221 11 345589999999999988652 3322211
Q ss_pred HHHHHHh-----CCCCCEEEEeecCChhh----------HHHHHHHhCCCCCeEEe---------ccCCCCceEEEEEee
Q 010563 184 LSSLRNY-----LPDVPILALTATAAPKV----------QKDVMESLCLQNPLVLK---------SSFNRPNLFYEVRYK 239 (507)
Q Consensus 184 l~~l~~~-----~~~~~~i~lSAT~~~~~----------~~~i~~~l~~~~~~~~~---------~~~~~~ni~~~v~~~ 239 (507)
+ +... .+..++++||||+.... ...+...++.. .+.. ....++...+.....
T Consensus 152 ~--~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 227 (555)
T 3tbk_A 152 Y--LDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS--VIATVRDNVAELEQVVYKPQKISRKVAS 227 (555)
T ss_dssp H--HHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS--EEECCCSCHHHHHTTCCCCCEEEEECCC
T ss_pred H--HHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe--eeeccccCHHHHHhhcCCCceEEEEecC
Confidence 1 2222 15678999999996532 22333444321 1111 111233332222110
Q ss_pred c-------------------------------------------------------------------------------
Q 010563 240 D------------------------------------------------------------------------------- 240 (507)
Q Consensus 240 ~------------------------------------------------------------------------------- 240 (507)
.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 307 (555)
T 3tbk_A 228 RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHL 307 (555)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ------------------------------------------------------------chhhHHHHHHHHHHh----c
Q 010563 241 ------------------------------------------------------------LLDDAYADLCSVLKA----N 256 (507)
Q Consensus 241 ------------------------------------------------------------~~~~~~~~l~~~l~~----~ 256 (507)
....+...|.+++.. .
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 387 (555)
T 3tbk_A 308 RKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLK 387 (555)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccC
Confidence 001234444444433 4
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCC------------CceeEecCCCCHHHHHHHHHHHhc-CCceEEEEeCccccccc
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGG------------ISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGID 323 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g------------~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a~~~GiD 323 (507)
...++||||++++.++.++..|.+.| .....+||+|+.++|..++++|++ |+++|||||+++++|||
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlD 467 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGID 467 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEE
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCc
Confidence 56799999999999999999999864 344556679999999999999999 99999999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHH
Q 010563 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (507)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~ 371 (507)
+|++++|||||+|+|+..|+||+|| ||. .+|.+++|+++.+.....
T Consensus 468 lp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 468 IAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp TTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 9999999999999999999999999 998 799999999988765543
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.4e-40 Score=344.86 Aligned_cols=314 Identities=19% Similarity=0.244 Sum_probs=237.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHHHHHHHHHHHc-CC---ceEEec
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEFLS 109 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~~q~~~~l~~~-gi---~~~~~~ 109 (507)
+|+|+|.++++.++.+ ++++.+|||+|||++++++++. ..+++|||+|+++|+.||.+.++++ +. .+..++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 5999999999999999 9999999999999999988765 4789999999999999999999985 66 788888
Q ss_pred CCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHH-HHHH
Q 010563 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL-SSLR 188 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l-~~l~ 188 (507)
+..........+. ..+++++||+.+.... .........+++||+||||++.... .|..+ ..+.
T Consensus 88 g~~~~~~~~~~~~-------~~~ivv~T~~~l~~~~----~~~~~~~~~~~~vIiDEaH~~~~~~-----~~~~~~~~~~ 151 (494)
T 1wp9_A 88 GEKSPEERSKAWA-------RAKVIVATPQTIENDL----LAGRISLEDVSLIVFDEAHRAVGNY-----AYVFIAREYK 151 (494)
T ss_dssp SCSCHHHHHHHHH-------HCSEEEECHHHHHHHH----HTTSCCTTSCSEEEEETGGGCSTTC-----HHHHHHHHHH
T ss_pred CCcchhhhhhhcc-------CCCEEEecHHHHHHHH----hcCCcchhhceEEEEECCcccCCCC-----cHHHHHHHHH
Confidence 8777665443332 2678888888664321 1122345668999999999997532 12222 3344
Q ss_pred HhCCCCCEEEEeecCCh--hhHHHHHHHhCCCCCeEEecc-------CCCCceEEEEEeec-------------------
Q 010563 189 NYLPDVPILALTATAAP--KVQKDVMESLCLQNPLVLKSS-------FNRPNLFYEVRYKD------------------- 240 (507)
Q Consensus 189 ~~~~~~~~i~lSAT~~~--~~~~~i~~~l~~~~~~~~~~~-------~~~~ni~~~v~~~~------------------- 240 (507)
...+..++++||||+.. ....++...++...+...... +......+.....+
T Consensus 152 ~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALK 231 (494)
T ss_dssp HHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 45668899999999983 344556666654332221110 00111111000000
Q ss_pred --------------------------------------------------------------------------------
Q 010563 241 -------------------------------------------------------------------------------- 240 (507)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (507)
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (494)
T 1wp9_A 232 PLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAG 311 (494)
T ss_dssp HHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccc
Confidence
Q ss_pred ----------------------------chhhHHHHHHHHHHh----cCCccEEEEeccchhHHHHHHHHHhCCCceeEe
Q 010563 241 ----------------------------LLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (507)
Q Consensus 241 ----------------------------~~~~~~~~l~~~l~~----~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~ 288 (507)
....++..+.+++.. ..+.++||||++++.++.+++.|.+.|+.+..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 391 (494)
T 1wp9_A 312 STKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 391 (494)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEE
Confidence 112244455555555 467899999999999999999999999999999
Q ss_pred cC--------CCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEE
Q 010563 289 HA--------GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (507)
Q Consensus 289 h~--------~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~ 360 (507)
|| +++.++|.+++++|++|+.+|||||+++++|||+|++++||++++|+|+..|.||+||+||.|+ |.++.
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~ 470 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVII 470 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEE
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred EeccchHHH
Q 010563 361 YYGMDDRRR 369 (507)
Q Consensus 361 ~~~~~d~~~ 369 (507)
++.+++.+.
T Consensus 471 l~~~~t~ee 479 (494)
T 1wp9_A 471 LMAKGTRDE 479 (494)
T ss_dssp EEETTSHHH
T ss_pred EEecCCHHH
Confidence 999876553
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=374.36 Aligned_cols=322 Identities=18% Similarity=0.193 Sum_probs=239.9
Q ss_pred HHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHHcCCceEE
Q 010563 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (507)
Q Consensus 31 ~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~ 107 (507)
...|+|. |+|+|.++++++.+|+++++.+|||+|||++|.++++. .++++||++|+++|+.|+.+.+++....+..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 4457887 99999999999999999999999999999999888764 6789999999999999999999985446666
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 010563 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (507)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l 187 (507)
+.+.... .+..+++++|||++...- .........+++|||||||++.+|+ +...+ ..+
T Consensus 159 ltGd~~~-------------~~~~~IvV~Tpe~L~~~L----~~~~~~l~~l~lVViDEaH~l~d~~--rg~~~---e~i 216 (1010)
T 2xgj_A 159 MTGDITI-------------NPDAGCLVMTTEILRSML----YRGSEVMREVAWVIFDEVHYMRDKE--RGVVW---EET 216 (1010)
T ss_dssp ECSSCEE-------------CTTCSEEEEEHHHHHHHH----HHTCTTGGGEEEEEEETGGGGGCTT--THHHH---HHH
T ss_pred EeCCCcc-------------CCCCCEEEEcHHHHHHHH----HcCcchhhcCCEEEEechhhhcccc--hhHHH---HHH
Confidence 6655431 124789999998764211 1122334568999999999999886 33333 334
Q ss_pred HHhCC-CCCEEEEeecCChhhHHHHHHHhC--CCCCe-EEeccCCCCceEEEEEeec-----------------------
Q 010563 188 RNYLP-DVPILALTATAAPKVQKDVMESLC--LQNPL-VLKSSFNRPNLFYEVRYKD----------------------- 240 (507)
Q Consensus 188 ~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~--~~~~~-~~~~~~~~~ni~~~v~~~~----------------------- 240 (507)
...+| +.++++||||++... ++..+++ ...+. ++........+...+....
T Consensus 217 l~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM 294 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHH
T ss_pred HHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHH
Confidence 44444 789999999987642 2333332 12232 2222222222211111100
Q ss_pred ------------------------ch-------hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCc-----
Q 010563 241 ------------------------LL-------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS----- 284 (507)
Q Consensus 241 ------------------------~~-------~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~----- 284 (507)
.. ...+..+...+...+..++||||+|++.|+.++..|...++.
T Consensus 295 ~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~ 374 (1010)
T 2xgj_A 295 ASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEK 374 (1010)
T ss_dssp HTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHH
T ss_pred HHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHH
Confidence 00 122334555555556668999999999999999999775442
Q ss_pred ----------------------------------eeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEE
Q 010563 285 ----------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (507)
Q Consensus 285 ----------------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~V 330 (507)
+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 375 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vV 454 (1010)
T 2xgj_A 375 EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 454 (1010)
T ss_dssp HHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEE
T ss_pred HHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEE
Confidence 7889999999999999999999999999999999999999999999
Q ss_pred EE----eCC----CCCHHHHHHHhcccCCCCC--CceEEEEeccc-hHHHHHHHHHhc
Q 010563 331 CH----FNI----PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKN 377 (507)
Q Consensus 331 I~----~~~----p~s~~~y~Q~~GRagR~g~--~~~~i~~~~~~-d~~~~~~~~~~~ 377 (507)
|+ ||. |.|+.+|+||+|||||.|. .|.|++++++. +...+..++...
T Consensus 455 I~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~ 512 (1010)
T 2xgj_A 455 FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 512 (1010)
T ss_dssp ESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCC
T ss_pred EeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCC
Confidence 99 999 8999999999999999997 59999999866 666677776544
No 32
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=8e-41 Score=371.94 Aligned_cols=320 Identities=18% Similarity=0.254 Sum_probs=191.9
Q ss_pred HHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC--------CCeEEEecChHHHHHHHHHHHHHc-
Q 010563 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK- 101 (507)
Q Consensus 31 ~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~--------~~~~lvi~P~~~L~~q~~~~l~~~- 101 (507)
...+|+..|||+|.++++.++.|+++++.+|||+|||++|++|++.. .+++|||+|+++|+.|+.+.++++
T Consensus 241 ~~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999999999999999999999999998753 789999999999999999999986
Q ss_pred ---CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh-hh-ccCCccEEEEeccccccccCCC
Q 010563 102 ---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHD 176 (507)
Q Consensus 102 ---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~-~~-~~~~l~~iViDEaH~i~~~g~~ 176 (507)
++++..++++......... +.. ..+|+++||+.+.. .+.. .. ....+++|||||||++...+ .
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~---~~~---~~~Ivv~Tp~~l~~-----~l~~~~~~~~~~~~~iViDEaH~~~~~~-~ 388 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEK---VIE---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNH-P 388 (797)
T ss_dssp GGGTCCEEEECCC-----CHHH---HHH---TCSEEEECHHHHHH-----HHHSSSCCCGGGCSEEEETTGGGCSTTS-H
T ss_pred ccCCceEEEEeCCcchhhhHHH---hhC---CCCEEEEchHHHHH-----HHHhccccccccCCEEEEECccccCCCc-c
Confidence 8999888887754432221 111 26788888887532 2211 11 34458999999999998744 1
Q ss_pred CHHHHHHHHHHHHh-----CCCCCEEEEeecCCh----------hhHHHHHHHhCCCCCeEEe---------ccCCCCce
Q 010563 177 FRPSYRKLSSLRNY-----LPDVPILALTATAAP----------KVQKDVMESLCLQNPLVLK---------SSFNRPNL 232 (507)
Q Consensus 177 fr~~~~~l~~l~~~-----~~~~~~i~lSAT~~~----------~~~~~i~~~l~~~~~~~~~---------~~~~~~ni 232 (507)
++.... .+... .+..++++||||+.. .....+...++.. .+.. ....++..
T Consensus 389 ~~~i~~---~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~--~i~~~~~~~~~l~~~~~~~~~ 463 (797)
T 4a2q_A 389 YNVLMT---RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEI 463 (797)
T ss_dssp HHHHHH---HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCTTHHHHHHHSCCCCC
T ss_pred HHHHHH---HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc--EEecccccHHHHHHhcCCCce
Confidence 222221 22222 456889999999963 2223333344321 1110 00122222
Q ss_pred EEEEEee---------------------------------------c---------------------------------
Q 010563 233 FYEVRYK---------------------------------------D--------------------------------- 240 (507)
Q Consensus 233 ~~~v~~~---------------------------------------~--------------------------------- 240 (507)
.+..... .
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 543 (797)
T 4a2q_A 464 DVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALF 543 (797)
T ss_dssp EEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 2211110 0
Q ss_pred ------------------------------------------------------------------chhhHHHHHHHHHH
Q 010563 241 ------------------------------------------------------------------LLDDAYADLCSVLK 254 (507)
Q Consensus 241 ------------------------------------------------------------------~~~~~~~~l~~~l~ 254 (507)
....++..|.+++.
T Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~ 623 (797)
T 4a2q_A 544 ICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILD 623 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHH
Confidence 00123444555554
Q ss_pred h----cCCccEEEEeccchhHHHHHHHHHhC------------CCceeEecCCCCHHHHHHHHHHHhc-CCceEEEEeCc
Q 010563 255 A----NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVA 317 (507)
Q Consensus 255 ~----~~~~~~IVf~~s~~~~~~l~~~L~~~------------g~~~~~~h~~l~~~~R~~~~~~f~~-g~~~VLVaT~a 317 (507)
. ..+.++||||++++.++.++..|++. |..+..+||+|+..+|..++++|++ |+++|||||++
T Consensus 624 ~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~ 703 (797)
T 4a2q_A 624 DAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 703 (797)
T ss_dssp HHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC
T ss_pred HHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCc
Confidence 3 55679999999999999999999874 5566778999999999999999999 99999999999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 010563 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (507)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~ 369 (507)
+++|||+|++++|||||+|+|+..|+||+|| ||. ++|.+++|++..+...
T Consensus 704 ~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp -------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 9999999999999999999999999999999 999 7899999999877643
No 33
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.5e-42 Score=372.53 Aligned_cols=316 Identities=20% Similarity=0.199 Sum_probs=241.2
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHH
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQ 94 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g------~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~ 94 (507)
..+.+.+.+.+|| .|+++|.++++.++.+ .++++++|||+|||++|++|++. .+..++|++||++|+.|+
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~ 433 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQH 433 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHH
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH
Confidence 3455555556899 7999999999999875 58999999999999999999875 478999999999999999
Q ss_pred HHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 010563 95 VIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (507)
Q Consensus 95 ~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (507)
.+.++++ |+++..++++.....+...+..+..+. .+|+++||+.+ .......++++|||||+|++
T Consensus 434 ~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll---------~~~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 434 YRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ--IDVVIGTHALI---------QEDVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC--CCEEEECTTHH---------HHCCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHH---------hhhhhccCCceEEecccchh
Confidence 9998874 789999999999888888888887775 78999998754 22334567999999999995
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec-cCCCCceEEEEEeecchhhHHHHH
Q 010563 171 SSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYADL 249 (507)
Q Consensus 171 ~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~ni~~~v~~~~~~~~~~~~l 249 (507)
|...|. .+....++.++++||||+.+.... ....+..+..++.. +..+..+...+.........++.+
T Consensus 503 ---g~~qr~------~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i 571 (780)
T 1gm5_A 503 ---GVKQRE------ALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFV 571 (780)
T ss_dssp --------C------CCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHH
T ss_pred ---hHHHHH------HHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHH
Confidence 432221 223333578899999999887655 23333333333322 233444443333222222222222
Q ss_pred HHHHHhcCCccEEEEeccc--------hhHHHHHHHHHh---CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc
Q 010563 250 CSVLKANGDTCAIVYCLER--------TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (507)
Q Consensus 250 ~~~l~~~~~~~~IVf~~s~--------~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~ 318 (507)
.+.+ ..+.+++|||++. ..++.+++.|++ .++.+..+||+|++++|..++++|++|+++|||||+++
T Consensus 572 ~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vi 649 (780)
T 1gm5_A 572 RQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVI 649 (780)
T ss_dssp HHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCC
T ss_pred HHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 2222 2356799999966 457888999988 47889999999999999999999999999999999999
Q ss_pred cccccCCCccEEEEeCCCC-CHHHHHHHhcccCCCCCCceEEEEecc
Q 010563 319 GMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (507)
Q Consensus 319 ~~GiD~p~v~~VI~~~~p~-s~~~y~Q~~GRagR~g~~~~~i~~~~~ 364 (507)
++|||+|++++||+++.|. +...|.||+||+||.|++|.|++++++
T Consensus 650 e~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 650 EVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 9999999999999999996 789999999999999999999999984
No 34
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.5e-38 Score=362.52 Aligned_cols=323 Identities=20% Similarity=0.184 Sum_probs=253.6
Q ss_pred CCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHc----CC--CEEEEcCCCchHHHHHHHHHh---cCCCeEEEecChH
Q 010563 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----GR--DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (507)
Q Consensus 18 ~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~----g~--d~lv~apTG~GKTl~~~lp~l---~~~~~~lvi~P~~ 88 (507)
..++.+..+...+...|||. +||+|.++++.++. |+ |+++++|||+|||++|+++++ ..+..++|++||+
T Consensus 584 ~~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~ 662 (1151)
T 2eyq_A 584 FAFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 662 (1151)
T ss_dssp CCCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechH
Confidence 34556667777888889998 69999999999986 66 899999999999999987764 4677999999999
Q ss_pred HHHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEE
Q 010563 89 ALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (507)
Q Consensus 89 ~L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iVi 164 (507)
+|+.|+.+.+++ +++.+..+++..+..........+..+. .+++++||+.+. .......+++|||
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIvV~T~~ll~---------~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDILIGTHKLLQ---------SDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEEEECTHHHH---------SCCCCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHh---------CCccccccceEEE
Confidence 999999999986 3578888888888888888888887765 788999986553 2234566899999
Q ss_pred eccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec-cCCCCceEEEEEeecchh
Q 010563 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLD 243 (507)
Q Consensus 165 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~ni~~~v~~~~~~~ 243 (507)
||||++ |... +.. +....++.++++||||+.+..... ...++.++.++.. +..+..+...+..... .
T Consensus 732 DEaH~~---g~~~---~~~---l~~l~~~~~vl~lSATp~p~~l~~--~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~-~ 799 (1151)
T 2eyq_A 732 DEEHRF---GVRH---KER---IKAMRANVDILTLTATPIPRTLNM--AMSGMRDLSIIATPPARRLAVKTFVREYDS-M 799 (1151)
T ss_dssp ESGGGS---CHHH---HHH---HHHHHTTSEEEEEESSCCCHHHHH--HHTTTSEEEECCCCCCBCBCEEEEEEECCH-H
T ss_pred echHhc---ChHH---HHH---HHHhcCCCCEEEEcCCCChhhHHH--HHhcCCCceEEecCCCCccccEEEEecCCH-H
Confidence 999994 4211 222 333335788999999999887663 3334444433322 2233444444333221 2
Q ss_pred hHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhC--CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccccc
Q 010563 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (507)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (507)
.....+...+. .+++++|||+++++++.+++.|++. +..+..+||+|++.+|+.++++|.+|+++|||||+++++|
T Consensus 800 ~i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~G 877 (1151)
T 2eyq_A 800 VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 877 (1151)
T ss_dssp HHHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGG
T ss_pred HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceee
Confidence 22333333332 3568999999999999999999987 8899999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEeCC-CCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 010563 322 IDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (507)
Q Consensus 322 iD~p~v~~VI~~~~-p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d 366 (507)
||+|++++||.++. +.++..|+||+||+||.|+.|.|++++.+.+
T Consensus 878 iDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 878 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp SCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred ecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 99999999999988 5699999999999999999999999997653
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.2e-38 Score=341.98 Aligned_cols=322 Identities=19% Similarity=0.189 Sum_probs=234.8
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH----c
Q 010563 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----K 101 (507)
Q Consensus 29 ~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~----~ 101 (507)
+.++.+|+ .|+|.|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++||+|+++|+.|..+.+.. +
T Consensus 75 a~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~l 151 (844)
T 1tf5_A 75 ASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFL 151 (844)
T ss_dssp HHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 33456899 89999999999999999 99999999999999999983 466899999999999988777655 5
Q ss_pred CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH---HhhhccCCccEEEEecccccc-ccCCC-
Q 010563 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGHD- 176 (507)
Q Consensus 102 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~g~~- 176 (507)
|+.+..+.++.+...+...+ ..+|+|+||..+.-......+ ........+.++||||||.++ +.+..
T Consensus 152 gl~v~~i~gg~~~~~r~~~~--------~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tp 223 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEKREAY--------AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 223 (844)
T ss_dssp TCCEEECCTTSCHHHHHHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred CCeEEEEeCCCCHHHHHHhc--------CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccc
Confidence 89999998888766544332 167888888766322222222 112335678999999999987 54310
Q ss_pred ---------CHHHHHHHHHHHHhCC----------CCCEE-----------------EEeecCCh---hhH---------
Q 010563 177 ---------FRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQ--------- 208 (507)
Q Consensus 177 ---------fr~~~~~l~~l~~~~~----------~~~~i-----------------~lSAT~~~---~~~--------- 208 (507)
-...|..+..+...+| +.+++ ++|||.+. .+.
T Consensus 224 lIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~ 303 (844)
T 1tf5_A 224 LIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAM 303 (844)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTC
T ss_pred hhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHh
Confidence 0123455555555554 23343 55666432 111
Q ss_pred ------------------------------------------------------------------------------HH
Q 010563 209 ------------------------------------------------------------------------------KD 210 (507)
Q Consensus 209 ------------------------------------------------------------------------------~~ 210 (507)
..
T Consensus 304 ~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e 383 (844)
T 1tf5_A 304 QKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEE 383 (844)
T ss_dssp CBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHH
T ss_pred hcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHH
Confidence 11
Q ss_pred HHHHhCCCCCeEEeccCCCCceEEE---EEeecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCce
Q 010563 211 VMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (507)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~ 285 (507)
+.+..++. ++..+.++|.+... +.+. ...+++..|...+.. ..+.++||||+|++.++.|+..|++.|+++
T Consensus 384 ~~~iY~l~---vv~IPtn~p~~r~d~~d~v~~-~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~ 459 (844)
T 1tf5_A 384 FRNIYNMQ---VVTIPTNRPVVRDDRPDLIYR-TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPH 459 (844)
T ss_dssp HHHHHCCC---EEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHhCCc---eEEecCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCE
Confidence 22222221 12223344443221 1222 235677777777654 245689999999999999999999999999
Q ss_pred eEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCC--------CccEEEEeCCCCCHHHHHHHhcccCCCCCCce
Q 010563 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (507)
Q Consensus 286 ~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p--------~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~ 357 (507)
..+||++.+.+|..+.++++.| .|+|||+++|+|+|++ ++.+||++++|.|.+.|.||+||+||.|.+|.
T Consensus 460 ~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 460 QVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp EEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred EEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 9999999888887666666655 6999999999999999 78899999999999999999999999999999
Q ss_pred EEEEeccchH
Q 010563 358 SLLYYGMDDR 367 (507)
Q Consensus 358 ~i~~~~~~d~ 367 (507)
+++|++..|.
T Consensus 538 s~~~vs~eD~ 547 (844)
T 1tf5_A 538 TQFYLSMEDE 547 (844)
T ss_dssp EEEEEETTSS
T ss_pred EEEEecHHHH
Confidence 9999998763
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.3e-40 Score=377.42 Aligned_cols=323 Identities=15% Similarity=0.215 Sum_probs=240.9
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHHHHHHHHHH
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLK 99 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~~q~~~~l~ 99 (507)
+++.+.+.+.+||. | |+|.++|+.++.|+|+++.||||+|||+ |++|++. .++++||++||++|+.|+.+.++
T Consensus 44 ~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHH
Confidence 45667788889999 9 9999999999999999999999999998 8888874 46789999999999999999998
Q ss_pred Hc----CC----ceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 100 EK----GI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 100 ~~----gi----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
++ ++ .+..+.++............+.. .+|+++||+.+.. +.. ....+++|||||||+++
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~----~~IlV~TP~~L~~------~l~--~L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN----FKIVITTTQFLSK------HYR--ELGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----CSEEEEEHHHHHH------CST--TSCCCSEEEESCHHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----CCEEEEcHHHHHH------HHH--HhccCCEEEEeChhhhh
Confidence 74 45 67778887776665555554443 6788888875532 111 14468999999999999
Q ss_pred ccCCCCHHHHHHHHHHHH----h-CCCCCEEEEeecCChhhH---HHHHH-HhCCCCCeEEeccCCCCceEEEEEeecch
Q 010563 172 SWGHDFRPSYRKLSSLRN----Y-LPDVPILALTATAAPKVQ---KDVME-SLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (507)
Q Consensus 172 ~~g~~fr~~~~~l~~l~~----~-~~~~~~i~lSAT~~~~~~---~~i~~-~l~~~~~~~~~~~~~~~ni~~~v~~~~~~ 242 (507)
+||+++++.+..++.... . .+..+++++|||+++. . ..+.. ..... +.......+++...+..
T Consensus 189 ~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~---v~~~~~~~~~i~~~~~~---- 260 (1054)
T 1gku_B 189 KASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFD---IGSSRITVRNVEDVAVN---- 260 (1054)
T ss_dssp TSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCC---CSCCEECCCCEEEEEES----
T ss_pred hccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEE---ccCcccCcCCceEEEec----
Confidence 998777766665431110 1 1357899999999886 2 11222 22211 11112233455544442
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEE----eCcc
Q 010563 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA----TVAF 318 (507)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVa----T~a~ 318 (507)
.++...|.++++.. ++++||||+|++.++.+++.|++. +++..+||++ ..++++|++|+.+|||| |+++
T Consensus 261 ~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 261 DESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp CCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC-----
T ss_pred hhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCee
Confidence 23445566666655 467999999999999999999988 9999999998 37789999999999999 8999
Q ss_pred cccccCCCc-cEEEEeCCC-------------------------------------------------------------
Q 010563 319 GMGIDRKDV-RLVCHFNIP------------------------------------------------------------- 336 (507)
Q Consensus 319 ~~GiD~p~v-~~VI~~~~p------------------------------------------------------------- 336 (507)
++|||+|+| ++|||+|+|
T Consensus 334 ~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (1054)
T 1gku_B 334 VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKD 413 (1054)
T ss_dssp -CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSS
T ss_pred EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999996 999999999
Q ss_pred ----------CCHHHHHHHhcccCCCCCCc--eEEEEeccchHHHHHHHHHh
Q 010563 337 ----------KSMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 337 ----------~s~~~y~Q~~GRagR~g~~~--~~i~~~~~~d~~~~~~~~~~ 376 (507)
.|..+|+||+|||||.|..| .++.++..+|...++.+.+.
T Consensus 414 ~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~ 465 (1054)
T 1gku_B 414 VVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIER 465 (1054)
T ss_dssp SEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHH
T ss_pred eeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHH
Confidence 79999999999999987765 47777777777766655553
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3e-38 Score=369.89 Aligned_cols=336 Identities=18% Similarity=0.214 Sum_probs=243.1
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEecChHHHHHHHHHHHH
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLK 99 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g-~d~lv~apTG~GKTl~~~lp~l~-----~~~~~lvi~P~~~L~~q~~~~l~ 99 (507)
..+.+.. .+|+.|+|+|.++++.++.+ +++++.||||+|||++|.+|++. .++++|+|+|+++|+.|.++.++
T Consensus 915 ~~e~l~~-~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~ 993 (1724)
T 4f92_B 915 AFESLYQ-DKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWY 993 (1724)
T ss_dssp HHHTTTT-TTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHH-hcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHH
Confidence 3344443 37899999999999999865 67999999999999999999864 36789999999999999999886
Q ss_pred H-----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccC
Q 010563 100 E-----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (507)
Q Consensus 100 ~-----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (507)
+ .|+++..+.+....... .. . ..+|+++|||.+.. .............+++||+||+|.+.+.
T Consensus 994 ~~f~~~~g~~V~~ltGd~~~~~~--~~---~----~~~IiV~TPEkld~--llr~~~~~~~l~~v~lvViDE~H~l~d~- 1061 (1724)
T 4f92_B 994 EKFQDRLNKKVVLLTGETSTDLK--LL---G----KGNIIISTPEKWDI--LSRRWKQRKNVQNINLFVVDEVHLIGGE- 1061 (1724)
T ss_dssp HHHTTTSCCCEEECCSCHHHHHH--HH---H----HCSEEEECHHHHHH--HHTTTTTCHHHHSCSEEEECCGGGGGST-
T ss_pred HHhchhcCCEEEEEECCCCcchh--hc---C----CCCEEEECHHHHHH--HHhCcccccccceeeEEEeechhhcCCC-
Confidence 5 36677776655432221 11 1 26799999986521 1111111112345899999999998763
Q ss_pred CCCHHHHH----HHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec-cCCCCc-eEEEEEeecc--hhhH
Q 010563 175 HDFRPSYR----KLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPN-LFYEVRYKDL--LDDA 245 (507)
Q Consensus 175 ~~fr~~~~----~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~~~~~n-i~~~v~~~~~--~~~~ 245 (507)
..+.+. ++..+.... +++++|+||||.++. .++.++++......+.. +..||. +...+...+. ....
T Consensus 1062 --rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~ 1137 (1724)
T 4f92_B 1062 --NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTR 1137 (1724)
T ss_dssp --THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHH
T ss_pred --CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhh
Confidence 344443 333333333 478999999999864 67889998876554433 333443 3333322211 1111
Q ss_pred H----HHHHHHH-HhcCCccEEEEeccchhHHHHHHHHHhC----------------------------------CCcee
Q 010563 246 Y----ADLCSVL-KANGDTCAIVYCLERTTCDELSAYLSAG----------------------------------GISCA 286 (507)
Q Consensus 246 ~----~~l~~~l-~~~~~~~~IVf~~s~~~~~~l~~~L~~~----------------------------------g~~~~ 286 (507)
. ..+...+ +...++++||||+|++.|+.++..|... ...++
T Consensus 1138 ~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa 1217 (1724)
T 4f92_B 1138 LLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1217 (1724)
T ss_dssp HHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEE
T ss_pred hhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEE
Confidence 1 1122222 3345678999999999999988776421 12478
Q ss_pred EecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEE----------eCCCCCHHHHHHHhcccCCCCC--
Q 010563 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----------FNIPKSMEAFYQESGRAGRDQL-- 354 (507)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----------~~~p~s~~~y~Q~~GRagR~g~-- 354 (507)
.|||||++.+|..+++.|++|.++|||||+++++|||+|.+++||. ...|.++.+|.|++|||||.|.
T Consensus 1218 ~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~ 1297 (1724)
T 4f92_B 1218 YLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDD 1297 (1724)
T ss_dssp EECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCS
T ss_pred EECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCC
Confidence 9999999999999999999999999999999999999999999982 3346799999999999999997
Q ss_pred CceEEEEeccchHHHHHHHHHhcc
Q 010563 355 PSKSLLYYGMDDRRRMEFILSKNQ 378 (507)
Q Consensus 355 ~~~~i~~~~~~d~~~~~~~~~~~~ 378 (507)
.|.|++++...+...++.++.+..
T Consensus 1298 ~G~avll~~~~~~~~~~~ll~~~~ 1321 (1724)
T 4f92_B 1298 EGRCVIMCQGSKKDFFKKFLYEPL 1321 (1724)
T ss_dssp CEEEEEEEEGGGHHHHHHHTTSCB
T ss_pred ceEEEEEecchHHHHHHHHhCCCC
Confidence 789999999999999988886543
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.3e-39 Score=343.16 Aligned_cols=301 Identities=13% Similarity=0.072 Sum_probs=220.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHHHHHHHHHHHcCC----ceEEec
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGI----AGEFLS 109 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~~q~~~~l~~~gi----~~~~~~ 109 (507)
.|||+|.++++.++.++++++.+|||+|||++|++++.. ..+++|||+|+++|+.|+.+.+++++. .+..+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 699999999999999999999999999999999988865 445999999999999999999998642 455565
Q ss_pred CCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 010563 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (507)
++...... .....+|+++||+.+..... .....+++|||||||++.. ..+..+..
T Consensus 193 ~~~~~~~~---------~~~~~~I~i~T~~~l~~~~~-------~~~~~~~liIiDE~H~~~~---------~~~~~il~ 247 (510)
T 2oca_A 193 GGASKDDK---------YKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (510)
T ss_dssp GGCCTTGG---------GCTTCSEEEEEHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHGG
T ss_pred cCCccccc---------cccCCcEEEEeHHHHhhchh-------hhhhcCCEEEEECCcCCCc---------ccHHHHHH
Confidence 55433221 11347899999997665421 1233489999999999865 23444555
Q ss_pred hC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccC--------CCCceEEEEEeec-----------c-h------
Q 010563 190 YL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF--------NRPNLFYEVRYKD-----------L-L------ 242 (507)
Q Consensus 190 ~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~--------~~~ni~~~v~~~~-----------~-~------ 242 (507)
.+ +..++++||||++..... .....++..+.++..+. -.+.....+.... . .
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 248 GLNNCMFKFGLSGSLRDGKAN-IMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp GCTTCCEEEEEESCGGGCSSC-HHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred hcccCcEEEEEEeCCCCCccc-HHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 55 567899999999655322 11111112222222111 1111111111100 0 0
Q ss_pred ---hhHHHHHHHHHHhc---CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEe-
Q 010563 243 ---DDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT- 315 (507)
Q Consensus 243 ---~~~~~~l~~~l~~~---~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT- 315 (507)
..+...+.+++... ++.++||||+ .+.++.+++.|.+.+.++..+||+++..+|+++++.|.+|+.+|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 01222344444432 4556777777 888999999999998899999999999999999999999999999999
Q ss_pred CcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 316 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
+++++|+|+|++++||++++|.|+..|+|++||+||.|+.+.++++|+..
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~ 455 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLI 455 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEee
Confidence 99999999999999999999999999999999999999887666666633
No 39
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=5.8e-39 Score=334.10 Aligned_cols=284 Identities=13% Similarity=0.091 Sum_probs=205.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCCE-EEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHHHHHHHHHHHcCCceEEec
Q 010563 35 GHAQFRDKQLDAIQAVLSGRDC-FCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (507)
Q Consensus 35 g~~~~r~~Q~~~i~~i~~g~d~-lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (507)
|+.+++|.|+ +|+.+++++++ ++.+|||+|||++|++|++. .+.++||++||++|+.|+.+.+... ......
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeee
Confidence 7888999986 79999999887 88999999999999999863 4679999999999999999988643 332222
Q ss_pred CCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 010563 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (507)
..... ...+...+.++|+..+ ...+.......++++|||||||++ +++ +......+ ..+.
T Consensus 78 ~~~~~-----------~~~~~~~i~~~t~~~l-----~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~~ 137 (451)
T 2jlq_A 78 PAVKS-----------DHTGREIVDLMCHATF-----TTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STRV 137 (451)
T ss_dssp TTCSC-----------CCCSSCCEEEEEHHHH-----HHHHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHHH
T ss_pred ccccc-----------cCCCCceEEEEChHHH-----HHHhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHhh
Confidence 11100 1122344555555443 233444445667999999999987 222 22222222 2233
Q ss_pred hCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccch
Q 010563 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269 (507)
Q Consensus 190 ~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~ 269 (507)
..++.++++||||++..... +...++.++......|...+ ..+..++... .+++||||+|++
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~-----~~~~~~~~~~~~~~~p~~~~------------~~~~~~l~~~-~~~~lVF~~s~~ 199 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDP-----FPQSNSPIEDIEREIPERSW------------NTGFDWITDY-QGKTVWFVPSIK 199 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCS-----SCCCSSCEEEEECCCCSSCC------------SSSCHHHHHC-CSCEEEECSSHH
T ss_pred cCCCceEEEEccCCCccchh-----hhcCCCceEecCccCCchhh------------HHHHHHHHhC-CCCEEEEcCCHH
Confidence 45689999999999875432 11122222222111111111 1122233333 458999999999
Q ss_pred hHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeC---------------
Q 010563 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN--------------- 334 (507)
Q Consensus 270 ~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~--------------- 334 (507)
.++.+++.|++.|+.+..+|+++. ..+++.|++|+.+|||||+++++|||+|+ ++|||++
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999999
Q ss_pred -----CCCCHHHHHHHhcccCCCCC-CceEEEEecc
Q 010563 335 -----IPKSMEAFYQESGRAGRDQL-PSKSLLYYGM 364 (507)
Q Consensus 335 -----~p~s~~~y~Q~~GRagR~g~-~~~~i~~~~~ 364 (507)
.|.|.++|+||+||+||.|. +|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8889888753
No 40
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.3e-38 Score=331.14 Aligned_cols=288 Identities=18% Similarity=0.184 Sum_probs=218.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCc-eEEecCCCCHHH
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~-~~~~~~~~~~~~ 116 (507)
.|+|+|.++++++++++++++.+|||+|||++|+.++...+..+|||+|+++|+.||.+.++++|++ +..++++...
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 5899999999999999999999999999999999999888899999999999999999999999998 8877765431
Q ss_pred HHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCE
Q 010563 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 196 (507)
..+|+++||+.+.... ... ...+++|||||||++...+ |+ .+...++..++
T Consensus 171 -------------~~~Ivv~T~~~l~~~~-----~~~--~~~~~liIvDEaH~~~~~~--~~-------~~~~~~~~~~~ 221 (472)
T 2fwr_A 171 -------------LKPLTVSTYDSAYVNA-----EKL--GNRFMLLIFDEVHHLPAES--YV-------QIAQMSIAPFR 221 (472)
T ss_dssp -------------CCSEEEEEHHHHHHTH-----HHH--TTTCSEEEEETGGGTTSTT--TH-------HHHHTCCCSEE
T ss_pred -------------cCCEEEEEcHHHHHHH-----HHh--cCCCCEEEEECCcCCCChH--HH-------HHHHhcCCCeE
Confidence 2578888887654321 111 1348999999999998755 43 24556678889
Q ss_pred EEEeecCChhhHH--HHHHHhC---------------CCCCeEEec--cCC-------------------CCceE-----
Q 010563 197 LALTATAAPKVQK--DVMESLC---------------LQNPLVLKS--SFN-------------------RPNLF----- 233 (507)
Q Consensus 197 i~lSAT~~~~~~~--~i~~~l~---------------~~~~~~~~~--~~~-------------------~~ni~----- 233 (507)
++||||+...... .+...++ +..+..... ... ..++.
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999742100 0111111 111111000 000 00000
Q ss_pred -EE-E------Ee---------------ecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecC
Q 010563 234 -YE-V------RY---------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290 (507)
Q Consensus 234 -~~-v------~~---------------~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~ 290 (507)
+. . .. ......+...+.++++...+.++||||++++.++.+++.|. +..+||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 00 0 00 00112456777888888778899999999999999999983 668999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCC-ceEEEE
Q 010563 291 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP-SKSLLY 361 (507)
Q Consensus 291 ~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~-~~~i~~ 361 (507)
+++..+|++++++|++|+++|||||+++++|+|+|++++||++++|+|+..|+|++||+||.|+. +.+++|
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999965 455544
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.9e-38 Score=369.95 Aligned_cols=336 Identities=19% Similarity=0.220 Sum_probs=239.4
Q ss_pred HHHHHHHhc-CCCCCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhc--------------CCCeEEEecChHH
Q 010563 26 LVKLLRWHF-GHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA--------------KPGIVLVVSPLIA 89 (507)
Q Consensus 26 l~~~l~~~f-g~~~~r~~Q~~~i~~i~~-g~d~lv~apTG~GKTl~~~lp~l~--------------~~~~~lvi~P~~~ 89 (507)
+....+..| ||++|+++|.++++.++. +++++++||||+|||++|.++++. .+.++|+|+|++|
T Consensus 66 Lp~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kA 145 (1724)
T 4f92_B 66 LPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRS 145 (1724)
T ss_dssp SCGGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHH
T ss_pred cCHHHHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHH
Confidence 334445556 899999999999999885 679999999999999999999863 2468999999999
Q ss_pred HHHHHHHHHHH----cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEe
Q 010563 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (507)
Q Consensus 90 L~~q~~~~l~~----~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViD 165 (507)
|+.|+++.|++ +|+.+..+.+....... . ....+|+++|||.+.. .............+++||||
T Consensus 146 La~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~-----~----~~~~~IlVtTpEkld~--llr~~~~~~~l~~v~~vIiD 214 (1724)
T 4f92_B 146 LVQEMVGSFGKRLATYGITVAELTGDHQLCKE-----E----ISATQIIVCTPEKWDI--ITRKGGERTYTQLVRLIILD 214 (1724)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT-----T----GGGCSEEEECHHHHHH--HTTSSTTHHHHTTEEEEEET
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc-----c----cCCCCEEEECHHHHHH--HHcCCccchhhcCcCEEEEe
Confidence 99999998876 57888887766543211 0 1237899999996421 00000001123458999999
Q ss_pred ccccccccCCCCHHHHH-----HHHHH-HHhCCCCCEEEEeecCChhhHHHHHHHhCCCCC--eEEeccCCCC-ceEEEE
Q 010563 166 EAHCISSWGHDFRPSYR-----KLSSL-RNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRP-NLFYEV 236 (507)
Q Consensus 166 EaH~i~~~g~~fr~~~~-----~l~~l-~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~--~~~~~~~~~~-ni~~~v 236 (507)
|+|.+.+ -|.... ++... ....+++++|+||||.++. .++.++|+...+ .....+..|| .+...+
T Consensus 215 EvH~l~d----~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~ 288 (1724)
T 4f92_B 215 EIHLLHD----DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLEQTY 288 (1724)
T ss_dssp TGGGGGS----TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEEEEC
T ss_pred cchhcCC----ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccEEEE
Confidence 9998864 243321 22211 2234688999999999864 567888875422 1222233343 232222
Q ss_pred Ee--ecchhhHHHHHH----HHHHh-cCCccEEEEeccchhHHHHHHHHHhC----------------------------
Q 010563 237 RY--KDLLDDAYADLC----SVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---------------------------- 281 (507)
Q Consensus 237 ~~--~~~~~~~~~~l~----~~l~~-~~~~~~IVf~~s~~~~~~l~~~L~~~---------------------------- 281 (507)
.. ..........+. ..+.. ..++++||||+||+.|+.++..|.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (1724)
T 4f92_B 289 VGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQC 368 (1724)
T ss_dssp CEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCC
T ss_pred eccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhccc
Confidence 11 111112222222 22222 34568999999999999999888531
Q ss_pred ---------CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEE----eC------CCCCHHHH
Q 010563 282 ---------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN------IPKSMEAF 342 (507)
Q Consensus 282 ---------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~----~~------~p~s~~~y 342 (507)
...++++||||+.++|..+.+.|++|.++|||||+++++|||+|.+++||+ |+ .|.|+.+|
T Consensus 369 ~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~ 448 (1724)
T 4f92_B 369 KNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDI 448 (1724)
T ss_dssp STHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHH
T ss_pred ccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHH
Confidence 124789999999999999999999999999999999999999999999996 44 35689999
Q ss_pred HHHhcccCCCCC--CceEEEEeccchHHHHHHHHHhcc
Q 010563 343 YQESGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKNQ 378 (507)
Q Consensus 343 ~Q~~GRagR~g~--~~~~i~~~~~~d~~~~~~~~~~~~ 378 (507)
.||+|||||.|. .|.++++.+.+|......++....
T Consensus 449 ~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~ 486 (1724)
T 4f92_B 449 LQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQL 486 (1724)
T ss_dssp HHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCS
T ss_pred HHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCCC
Confidence 999999999875 789999999998888877776543
No 42
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.8e-39 Score=347.90 Aligned_cols=284 Identities=13% Similarity=0.080 Sum_probs=200.9
Q ss_pred CCcHHHH-----HHHHHHH------cCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHHHHHHHHHHHcC
Q 010563 38 QFRDKQL-----DAIQAVL------SGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKG 102 (507)
Q Consensus 38 ~~r~~Q~-----~~i~~i~------~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~~q~~~~l~~~g 102 (507)
.|+++|+ ++|+.++ +|+|+++.+|||+|||++|++|++. .+.+++|++||++|+.|+.+.++.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 8999999 9999888 8999999999999999999998873 46789999999999999999998775
Q ss_pred CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECccccc---Chh-hHHHHHhhhccCCccEEEEeccccccccCCCCH
Q 010563 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (507)
Q Consensus 103 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~---t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (507)
+.. .... .. .+.||+.+. +.+ +...+.......++++|||||||++. ..+.
T Consensus 295 i~~--~~~~-------------------l~-~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~---~~~~ 349 (673)
T 2wv9_A 295 VRY--LTPA-------------------VQ-REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD---PASI 349 (673)
T ss_dssp CEE--CCC-----------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC---HHHH
T ss_pred eee--eccc-------------------cc-ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC---ccHH
Confidence 431 1100 00 034444322 222 22233333346779999999999972 1122
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCC
Q 010563 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (507)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~ 258 (507)
.....+..+.. .++.++++||||+++.+.. ......+... +..... ......+...+.. .+
T Consensus 350 ~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~~----~~~~~~~i~~----------v~~~~~---~~~~~~~l~~l~~-~~ 410 (673)
T 2wv9_A 350 AARGYIATRVE-AGEAAAIFMTATPPGTSDP----FPDTNSPVHD----------VSSEIP---DRAWSSGFEWITD-YA 410 (673)
T ss_dssp HHHHHHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEEE----------EECCCC---SSCCSSCCHHHHS-CC
T ss_pred HHHHHHHHhcc-ccCCcEEEEcCCCChhhhh----hcccCCceEE----------EeeecC---HHHHHHHHHHHHh-CC
Confidence 22333333322 2578999999999876321 0000111111 000000 0111112223333 35
Q ss_pred ccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEE------
Q 010563 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH------ 332 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~------ 332 (507)
+++||||++++.++.+++.|++.|+.+..+||+ +|..+++.|++|+++|||||+++++|||+| +++|||
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~ 485 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVK 485 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECC
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccc
Confidence 689999999999999999999999999999993 799999999999999999999999999999 999998
Q ss_pred --------------eCCCCCHHHHHHHhcccCCC-CCCceEEEEe---ccchHHHH
Q 010563 333 --------------FNIPKSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRRM 370 (507)
Q Consensus 333 --------------~~~p~s~~~y~Q~~GRagR~-g~~~~~i~~~---~~~d~~~~ 370 (507)
+++|.|.++|+||+||+||. |++|.|++|+ ++.|...+
T Consensus 486 p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l 541 (673)
T 2wv9_A 486 PTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLA 541 (673)
T ss_dssp EEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBH
T ss_pred ceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHH
Confidence 67899999999999999999 7899999997 45554433
No 43
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.1e-38 Score=330.70 Aligned_cols=276 Identities=13% Similarity=0.111 Sum_probs=188.5
Q ss_pred HHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHh
Q 010563 49 AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDL 124 (507)
Q Consensus 49 ~i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~ 124 (507)
++++|+|+++++|||+|||++|++|++. .+.+++|++||++|+.|+.+.++.+++. .....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~--~~~~~------------- 68 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK--FHTQA------------- 68 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--EESSC-------------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE--Eeccc-------------
Confidence 3567899999999999999999988874 4568999999999999999999865432 11100
Q ss_pred hcCCCcccEEEECcccccC---hh-hHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEe
Q 010563 125 DSGKPSLRLLYVTPELTAT---PG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200 (507)
Q Consensus 125 ~~~~~~~~il~~tpe~~~t---~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lS 200 (507)
.. .++||+.+.. .+ +...+.......++++|||||||++ + ..|...+..+..+.. .++.++++||
T Consensus 69 ------~~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~--~~~~~~~~~~~~~~~-~~~~~~l~~S 137 (440)
T 1yks_A 69 ------FS-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-D--PASIAARGWAAHRAR-ANESATILMT 137 (440)
T ss_dssp ------CC-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-S--HHHHHHHHHHHHHHH-TTSCEEEEEC
T ss_pred ------ce-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-C--cchHHHHHHHHHHhc-cCCceEEEEe
Confidence 00 2556654321 11 2222333334567999999999998 2 223333334443332 3578999999
Q ss_pred ecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHh
Q 010563 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA 280 (507)
Q Consensus 201 AT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~ 280 (507)
||+++.+.. ......+..... . .+ ....... +...+... ++++||||++++.++.+++.|++
T Consensus 138 AT~~~~~~~----~~~~~~~~~~~~-~-------~~-~~~~~~~----~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~ 199 (440)
T 1yks_A 138 ATPPGTSDE----FPHSNGEIEDVQ-T-------DI-PSEPWNT----GHDWILAD-KRPTAWFLPSIRAANVMAASLRK 199 (440)
T ss_dssp SSCTTCCCS----SCCCSSCEEEEE-C-------CC-CSSCCSS----SCHHHHHC-CSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCchhhh----hhhcCCCeeEee-e-------cc-ChHHHHH----HHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 999877432 111111111100 0 00 0000111 22223333 46899999999999999999999
Q ss_pred CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEE-------------------eCCCCCHHH
Q 010563 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------------------FNIPKSMEA 341 (507)
Q Consensus 281 ~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~-------------------~~~p~s~~~ 341 (507)
.|+++..+|| ++|..+++.|++|+++|||||+++++|||+| +++||| ++.|.++++
T Consensus 200 ~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~ 274 (440)
T 1yks_A 200 AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASS 274 (440)
T ss_dssp TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHH
T ss_pred cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHH
Confidence 9999999999 4688999999999999999999999999999 999997 889999999
Q ss_pred HHHHhcccCCC-CCCceEEEEe---ccchHHHHHHH
Q 010563 342 FYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFI 373 (507)
Q Consensus 342 y~Q~~GRagR~-g~~~~~i~~~---~~~d~~~~~~~ 373 (507)
|+||+||+||. |++|.|++|| ++.|...++.+
T Consensus 275 ~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l 310 (440)
T 1yks_A 275 AAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWL 310 (440)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHH
T ss_pred HHHhccccCCCCCCCceEEEEeccCChhhhhhhhhh
Confidence 99999999998 6899999997 45555544443
No 44
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.2e-38 Score=339.91 Aligned_cols=307 Identities=13% Similarity=0.094 Sum_probs=211.4
Q ss_pred CChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHHHHHH
Q 010563 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQV 95 (507)
Q Consensus 20 ~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~~q~~ 95 (507)
+.+++.+.+.+.+ ....+.|.|+.+++.+++|+|+++.||||+|||++|++|++. .+.++||++||++|+.|+.
T Consensus 155 l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~ 232 (618)
T 2whx_A 155 VTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEME 232 (618)
T ss_dssp -------CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred ccchHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHH
Confidence 3445555554543 246678888878999999999999999999999999999873 4678999999999999999
Q ss_pred HHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChh-hHHHHHhhhccCCccEEEEeccccccccC
Q 010563 96 IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (507)
Q Consensus 96 ~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~-~~~~l~~~~~~~~l~~iViDEaH~i~~~g 174 (507)
+.++.. ...+ ..... . ....+...+.++ +.+ +...+.......++++|||||||++ +.+
T Consensus 233 ~~l~~~--~v~~-~~~~l--------~--~~~tp~~~i~~~------t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~ 292 (618)
T 2whx_A 233 EALRGL--PIRY-QTPAV--------K--SDHTGREIVDLM------CHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPC 292 (618)
T ss_dssp HHTTTS--CEEE-CCTTS--------S--CCCCSSSCEEEE------EHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHH
T ss_pred HHhcCC--ceeE-ecccc--------e--eccCCCceEEEE------ChHHHHHHHhccccccCCeEEEEECCCCC-Ccc
Confidence 888743 2221 11100 0 011112222222 322 2223333334677999999999997 322
Q ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHH
Q 010563 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (507)
Q Consensus 175 ~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~ 254 (507)
|...+..+...... ++.++++||||++..+.. +.-.++..+......+. ..+..+...+.
T Consensus 293 --~~~~~~~i~~~l~~-~~~q~il~SAT~~~~~~~-----~~~~~~~~~~v~~~~~~------------~~~~~ll~~l~ 352 (618)
T 2whx_A 293 --SVAARGYISTRVEM-GEAAAIFMTATPPGSTDP-----FPQSNSPIEDIEREIPE------------RSWNTGFDWIT 352 (618)
T ss_dssp --HHHHHHHHHHHHHH-TSCEEEEECSSCTTCCCS-----SCCCSSCEEEEECCCCS------------SCCSSSCHHHH
T ss_pred --HHHHHHHHHHHhcc-cCccEEEEECCCchhhhh-----hhccCCceeeecccCCH------------HHHHHHHHHHH
Confidence 55445444433322 578999999999876432 11122222221111110 11112223333
Q ss_pred hcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEE----
Q 010563 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV---- 330 (507)
Q Consensus 255 ~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~V---- 330 (507)
.. .+++||||+|++.++.+++.|++.|+.+..+||+ +|.+++++|++|+.+|||||+++++|||+| +++|
T Consensus 353 ~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 353 DY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp HC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred hC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 33 5689999999999999999999999999999984 688899999999999999999999999997 8888
Q ss_pred ----------------EEeCCCCCHHHHHHHhcccCCCCC-CceEEEEec---cchHHHHHHHH
Q 010563 331 ----------------CHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYG---MDDRRRMEFIL 374 (507)
Q Consensus 331 ----------------I~~~~p~s~~~y~Q~~GRagR~g~-~~~~i~~~~---~~d~~~~~~~~ 374 (507)
|++++|.|.++|+||+||+||.|. +|.|++|++ +.|...++.+.
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le 490 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTE 490 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHH
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHH
Confidence 778889999999999999999975 899999997 66655544443
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.2e-35 Score=314.88 Aligned_cols=326 Identities=17% Similarity=0.135 Sum_probs=238.7
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH----
Q 010563 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (507)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~---- 100 (507)
++.++.+|+ .|++.|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++||+|++.|+.|..+.+..
T Consensus 102 Ea~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 102 EAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 455668899 79999999999999998 99999999999999999963 466899999999999887777655
Q ss_pred cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH---HhhhccCCccEEEEecccccc-ccC--
Q 010563 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWG-- 174 (507)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~g-- 174 (507)
+|+.+..+.++.+...+...+ ..+|+|+||..+.-......+ ........+.++||||||.++ +.+
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y--------~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeart 250 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAY--------NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEART 250 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGS
T ss_pred cCCeEEEEeCCCCHHHHHHhc--------CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcc
Confidence 689999999888765544333 167888888765322111111 112345668999999999997 322
Q ss_pred --------CCCHHHHHHHHHHHHhCC----------CCCEE-----------------EEeecCCh---hhHHHHHH-Hh
Q 010563 175 --------HDFRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQKDVME-SL 215 (507)
Q Consensus 175 --------~~fr~~~~~l~~l~~~~~----------~~~~i-----------------~lSAT~~~---~~~~~i~~-~l 215 (507)
.+-...|..+..+...+| +.+++ ++|||.++ .+...+.. .+
T Consensus 251 PLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l 330 (922)
T 1nkt_A 251 PLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKEL 330 (922)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHH
T ss_pred ceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHH
Confidence 111345677777777775 34555 67888654 22111111 11
Q ss_pred CCCC-------Ce-------------------------------------------------------------------
Q 010563 216 CLQN-------PL------------------------------------------------------------------- 221 (507)
Q Consensus 216 ~~~~-------~~------------------------------------------------------------------- 221 (507)
...+ ..
T Consensus 331 ~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~ 410 (922)
T 1nkt_A 331 FSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAA 410 (922)
T ss_dssp CCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHH
Confidence 1111 00
Q ss_pred ---------EEeccCCCCceEEE---EEeecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeE
Q 010563 222 ---------VLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (507)
Q Consensus 222 ---------~~~~~~~~~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~ 287 (507)
++..+.++|.+... +.+. ...+++..|.+.+.. ..+.++||||+|++.++.|+..|++.|+++..
T Consensus 411 Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~-t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~v 489 (922)
T 1nkt_A 411 ELHEIYKLGVVSIPTNMPMIREDQSDLIYK-TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNV 489 (922)
T ss_dssp HHHHHHCCEEEECCCSSCCCCEECCCEEES-CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHhCCCeEEeCCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 11111222222111 1111 234677777776654 24568999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCc----------------------------------------
Q 010563 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------------------------------- 327 (507)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v---------------------------------------- 327 (507)
+||++...++..+.++|+.| .|+|||+++|+|+|++.+
T Consensus 490 Lnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (922)
T 1nkt_A 490 LNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 567 (922)
T ss_dssp ECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999888888888888877 699999999999999975
Q ss_pred ------------cEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchH
Q 010563 328 ------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (507)
Q Consensus 328 ------------~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~ 367 (507)
.+||+++.|.|...|.|++||+||.|.+|.++.|++..|.
T Consensus 568 ~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 568 SKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp THHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998775
No 46
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=8e-36 Score=319.23 Aligned_cols=322 Identities=18% Similarity=0.144 Sum_probs=218.3
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH----
Q 010563 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (507)
Q Consensus 28 ~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~---- 100 (507)
++.++.+|. .++|.|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++|++||++|+.|..+.+..
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 455566786 68999999999999998 99999999999999999973 456899999999999988877665
Q ss_pred cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH---HhhhccCCccEEEEecccccc-ccCCC
Q 010563 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGHD 176 (507)
Q Consensus 101 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~~l~~iViDEaH~i~-~~g~~ 176 (507)
+|+++..+.++.+...+...+ ..+|+|+||..+.-......+ ........+.++||||||.++ +.|..
T Consensus 142 lgl~v~~i~GG~~~~~r~~~~--------~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~t 213 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAKREAY--------AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEART 213 (853)
T ss_dssp TTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTC
T ss_pred cCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcc
Confidence 589999998888765443322 167877777654211111111 112335679999999999998 43310
Q ss_pred ----------CHHHHHHHHHHHHhCC---------------------CCCEE------------------------EEee
Q 010563 177 ----------FRPSYRKLSSLRNYLP---------------------DVPIL------------------------ALTA 201 (507)
Q Consensus 177 ----------fr~~~~~l~~l~~~~~---------------------~~~~i------------------------~lSA 201 (507)
-...|..+..+...+| +.+++ ++||
T Consensus 214 pLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsa 293 (853)
T 2fsf_A 214 PLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 293 (853)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred cccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCc
Confidence 0012333333333332 12222 6777
Q ss_pred cCCh---hhHH---------------------------------------------------------------------
Q 010563 202 TAAP---KVQK--------------------------------------------------------------------- 209 (507)
Q Consensus 202 T~~~---~~~~--------------------------------------------------------------------- 209 (507)
|.++ .+..
T Consensus 294 t~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyf 373 (853)
T 2fsf_A 294 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYF 373 (853)
T ss_dssp ---------------------------------------------------------------CCCCCEEEEEEEHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHH
Confidence 7542 1100
Q ss_pred ------------------HHHHHhCCCCCeEEeccCCCCceEEE---EEeecchhhHHHHHHHHHHh--cCCccEEEEec
Q 010563 210 ------------------DVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCL 266 (507)
Q Consensus 210 ------------------~i~~~l~~~~~~~~~~~~~~~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~ 266 (507)
.+.+..+ ..++..+.++|..... +.+. ...+++..|.+.+.. ..+.++||||+
T Consensus 374 r~Y~kl~GmTGTa~te~~ef~~iY~---l~vv~IPtn~p~~R~d~~d~v~~-~~~~K~~al~~~i~~~~~~gqpvLVft~ 449 (853)
T 2fsf_A 374 RLYEKLAGMTGTADTEAFEFSSIYK---LDTVVVPTNRPMIRKDLPDLVYM-TEAEKIQAIIEDIKERTAKGQPVLVGTI 449 (853)
T ss_dssp TTSSEEEEEECTTCCCHHHHHHHHC---CEEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred hhhhhhhcCCCCchhHHHHHHHHhC---CcEEEcCCCCCceeecCCcEEEe-CHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 0000000 0111112233332211 1112 235688888887754 35678999999
Q ss_pred cchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCC--------------------
Q 010563 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------------------- 326 (507)
Q Consensus 267 s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~-------------------- 326 (507)
|++.++.|+..|++.|+++..+||++...++..+.++|+.| .|+|||+++|+|+|++.
T Consensus 450 sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~ 527 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIE 527 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHH
T ss_pred cHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHH
Confidence 99999999999999999999999999988888888888888 59999999999999987
Q ss_pred ------------c-----cEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 010563 327 ------------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (507)
Q Consensus 327 ------------v-----~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d 366 (507)
| .+||++++|.|...|.|++||+||.|.+|.++.|++..|
T Consensus 528 ~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 528 KIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 3 599999999999999999999999999999999999877
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=9.5e-37 Score=335.07 Aligned_cols=327 Identities=16% Similarity=0.134 Sum_probs=236.2
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHc-CCCEEEEcCCCchHHHHHHHHHhc------C--CCeEEEe
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA------K--PGIVLVV 84 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~-g~d~lv~apTG~GKTl~~~lp~l~------~--~~~~lvi 84 (507)
...|..+++++.+.+.+++. | ..|.+.|+++|..++. +++++++||||+|||+ ++|++. . +..++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 55688899999999999885 5 6788899998887775 5679999999999998 455442 1 4569999
Q ss_pred cChHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEE
Q 010563 85 SPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (507)
Q Consensus 85 ~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iV 163 (507)
+|+++|+.|+.+.+.. ++.......+.... .........+++++||+.+.. .+........+++||
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~--------~~~~~~~~~~I~v~T~G~l~r-----~l~~~~~l~~~~~lI 213 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIR--------FENKTSNKTILKYMTDGMLLR-----EAMEDHDLSRYSCII 213 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEET--------TEEECCTTCSEEEEEHHHHHH-----HHHHSTTCTTEEEEE
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceec--------cccccCCCCCEEEECHHHHHH-----HHhhCccccCCCEEE
Confidence 9999999999888755 44332111110000 000112346787777765422 222333466799999
Q ss_pred Eecccc-ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeec--
Q 010563 164 IDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD-- 240 (507)
Q Consensus 164 iDEaH~-i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~-- 240 (507)
|||+|. ..+ ....+..+..+....++.+++++|||++.. .+..+++ ..+. +........+...+....
T Consensus 214 lDEah~R~ld----~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~-~~~v-i~v~gr~~pv~~~~~~~~~~ 284 (773)
T 2xau_A 214 LDEAHERTLA----TDILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFN-DAPL-LAVPGRTYPVELYYTPEFQR 284 (773)
T ss_dssp ECSGGGCCHH----HHHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTT-SCCE-EECCCCCCCEEEECCSSCCS
T ss_pred ecCccccccc----hHHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhc-CCCc-ccccCcccceEEEEecCCch
Confidence 999996 222 112234556666777889999999999754 3344443 2333 322222222222211111
Q ss_pred -chhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHh-----------CCCceeEecCCCCHHHHHHHHHHHh---
Q 010563 241 -LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-----------GGISCAAYHAGLNDKARSSVLDDWI--- 305 (507)
Q Consensus 241 -~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~-----------~g~~~~~~h~~l~~~~R~~~~~~f~--- 305 (507)
.....+..+..++.....+++||||+++++++.+++.|.+ .++.+..+||+|++++|..+++.|.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc
Confidence 1123344555555555678999999999999999999985 5788999999999999999999999
Q ss_pred --cCCceEEEEeCcccccccCCCccEEEEeCC------------------CCCHHHHHHHhcccCCCCCCceEEEEeccc
Q 010563 306 --SSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (507)
Q Consensus 306 --~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~ 365 (507)
+|+.+|||||+++++|||+|+|++||++++ |.|.++|+||+|||||. .+|.|+.+|+..
T Consensus 365 ~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp SSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred CCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999999999888 88999999999999999 799999999887
Q ss_pred hH
Q 010563 366 DR 367 (507)
Q Consensus 366 d~ 367 (507)
+.
T Consensus 444 ~~ 445 (773)
T 2xau_A 444 AF 445 (773)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.1e-35 Score=320.46 Aligned_cols=303 Identities=18% Similarity=0.181 Sum_probs=195.2
Q ss_pred CCcHHHHHHHHHHHc----C-CCEEEEcCCCchHHHHHHHHHh---c---------CCCeEEEecChHHHHHHHH-HHHH
Q 010563 38 QFRDKQLDAIQAVLS----G-RDCFCLMPTGGGKSMCYQIPAL---A---------KPGIVLVVSPLIALMENQV-IGLK 99 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~----g-~d~lv~apTG~GKTl~~~lp~l---~---------~~~~~lvi~P~~~L~~q~~-~~l~ 99 (507)
.+||+|.++++.+++ | +++++++|||+|||++++..+. . ..+++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999876 5 5689999999999998765442 1 4578999999999999999 8888
Q ss_pred HcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHH
Q 010563 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (507)
Q Consensus 100 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~ 179 (507)
.++.....+.... .....+++++||+.+........+........+++|||||||++...+
T Consensus 258 ~~~~~~~~~~~~~--------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~----- 318 (590)
T 3h1t_A 258 PFGDARHKIEGGK--------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD----- 318 (590)
T ss_dssp TTCSSEEECCC----------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------
T ss_pred hcchhhhhhhccC--------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-----
Confidence 8887666554221 123478999999987653211111222334568999999999987643
Q ss_pred HHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEE-e------ccCCCCceEEEEEee-------------
Q 010563 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-K------SSFNRPNLFYEVRYK------------- 239 (507)
Q Consensus 180 ~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~------~~~~~~ni~~~v~~~------------- 239 (507)
+..+..+...+++.++++||||+......+....++. +... . ..+..+...+.+...
T Consensus 319 -~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~--~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (590)
T 3h1t_A 319 -NSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGN--PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDV 395 (590)
T ss_dssp ----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS--CSEEECHHHHHHHTSSCCEEEEEEEETTCC----------
T ss_pred -hHHHHHHHHhCCcceEEEeccccccccchhHHHHcCC--ceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccc
Confidence 1344556677788899999999987655555554432 1110 0 001111111111100
Q ss_pred --------------cc----------hhhHHHHHHHHHHh-cCCccEEEEeccchhHHHHHHHHHhCCC--------cee
Q 010563 240 --------------DL----------LDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGI--------SCA 286 (507)
Q Consensus 240 --------------~~----------~~~~~~~l~~~l~~-~~~~~~IVf~~s~~~~~~l~~~L~~~g~--------~~~ 286 (507)
.. .....+.+.++++. ...+++||||+++++++.+++.|.+.+. .+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 475 (590)
T 3h1t_A 396 DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVA 475 (590)
T ss_dssp -------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEE
T ss_pred cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEE
Confidence 00 00112234444443 3457899999999999999999987543 267
Q ss_pred EecCCCCHHHHHHHHHHHhcCCce---EEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCC--CceEEEE
Q 010563 287 AYHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL--PSKSLLY 361 (507)
Q Consensus 287 ~~h~~l~~~~R~~~~~~f~~g~~~---VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~--~~~~i~~ 361 (507)
.+||+++. +|+.++++|++|+.+ |||+|+++++|||+|++++||++++|.|+..|+|++||+||.|. ....+++
T Consensus 476 ~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I 554 (590)
T 3h1t_A 476 RVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNI 554 (590)
T ss_dssp ECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEE
T ss_pred EEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEE
Confidence 78888754 799999999998866 88899999999999999999999999999999999999999875 3333444
Q ss_pred ec
Q 010563 362 YG 363 (507)
Q Consensus 362 ~~ 363 (507)
++
T Consensus 555 ~D 556 (590)
T 3h1t_A 555 ID 556 (590)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.8e-37 Score=323.44 Aligned_cols=269 Identities=14% Similarity=0.126 Sum_probs=186.7
Q ss_pred HHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHH
Q 010563 47 IQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122 (507)
Q Consensus 47 i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~ 122 (507)
...+.+++++++.+|||+|||++|++|++. .+.++||++|+++|+.|+.+.++. .............
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g--~~v~~~~~~~~~~------- 85 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRG--LPVRYQTSAVQRE------- 85 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTT--SCEEECC-------------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcC--ceEeEEecccccC-------
Confidence 344566889999999999999999999875 577899999999999999999874 3333222111100
Q ss_pred HhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc-----cccCCCCHHHHHHHHHHHHhCCCCCEE
Q 010563 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-----SSWGHDFRPSYRKLSSLRNYLPDVPIL 197 (507)
Q Consensus 123 ~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i-----~~~g~~fr~~~~~l~~l~~~~~~~~~i 197 (507)
..+...+.+++... +...+........+++|||||||++ ..+| .+.. +...++.+++
T Consensus 86 ----~t~~~~i~~~~~~~-----l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~--------~~~~-~~~~~~~~~i 147 (459)
T 2z83_A 86 ----HQGNEIVDVMCHAT-----LTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARG--------YIAT-KVELGEAAAI 147 (459)
T ss_dssp ------CCCSEEEEEHHH-----HHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHH--------HHHH-HHHTTSCEEE
T ss_pred ----CCCCcEEEEEchHH-----HHHHhhccccccCCcEEEEECCccCCchhhHHHH--------HHHH-HhccCCccEE
Confidence 11122233333222 2333433344667999999999984 2222 1111 2234689999
Q ss_pred EEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHH
Q 010563 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAY 277 (507)
Q Consensus 198 ~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~ 277 (507)
+||||++..+.. ......|...... ......+..+..++... .+++||||+|++.++.+++.
T Consensus 148 l~SAT~~~~~~~----~~~~~~pi~~~~~-------------~~~~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 148 FMTATPPGTTDP----FPDSNAPIHDLQD-------------EIPDRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp EECSSCTTCCCS----SCCCSSCEEEEEC-------------CCCSSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHH
T ss_pred EEEcCCCcchhh----hccCCCCeEEecc-------------cCCcchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHH
Confidence 999999876321 1111222221110 00001111112233333 56899999999999999999
Q ss_pred HHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEE--------------------eCCCC
Q 010563 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH--------------------FNIPK 337 (507)
Q Consensus 278 L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~--------------------~~~p~ 337 (507)
|++.|+.+..+|++ +|..+++.|++|+.+|||||+++++|||+|+ ++||+ |+.|.
T Consensus 210 L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~ 284 (459)
T 2z83_A 210 LQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI 284 (459)
T ss_dssp HHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC
T ss_pred HHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC
Confidence 99999999999995 6888999999999999999999999999999 99999 67999
Q ss_pred CHHHHHHHhcccCCCCC-CceEEEEeccc
Q 010563 338 SMEAFYQESGRAGRDQL-PSKSLLYYGMD 365 (507)
Q Consensus 338 s~~~y~Q~~GRagR~g~-~~~~i~~~~~~ 365 (507)
|.++|+||+|||||.|. +|.|++|+...
T Consensus 285 s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 285 TSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999999997 99999999875
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.5e-37 Score=328.02 Aligned_cols=277 Identities=22% Similarity=0.215 Sum_probs=203.5
Q ss_pred CcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHH-cCCceEEecCCCCHHHH
Q 010563 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVK 117 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~ 117 (507)
+++.|+++++.+.+++++++.||||+|||++|.+|++.++.+++|++||++|+.|..+.+.+ ++.......+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~---- 293 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT---- 293 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE----
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe----
Confidence 56777777777878899999999999999999999999888999999999999999988865 6666655544422
Q ss_pred HHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEE
Q 010563 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197 (507)
Q Consensus 118 ~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i 197 (507)
.....+|+++||+.+.. .......++++|||||||++.. +|+..+..+.......+...++
T Consensus 294 ---------~~~~~~IlV~TPGrLl~-------~~~l~l~~l~~lVlDEAH~l~~---~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 294 ---------ITTGAPVTYSTYGKFLA-------DGGCSGGAYDIIICDECHSTDS---TTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp ---------ECCCCSEEEEEHHHHHH-------TTSCCTTSCSEEEETTTTCCSH---HHHHHHHHHHHHTTTTTCSEEE
T ss_pred ---------ccCCCCEEEECcHHHHh-------CCCcccCcccEEEEccchhcCc---cHHHHHHHHHHhhhhcCCceEE
Confidence 12347888888887521 1223345699999999998643 2555555444433332233478
Q ss_pred EEeecCChhhHHHHHHHhCCCCCeEEe--ccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHH
Q 010563 198 ALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (507)
Q Consensus 198 ~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~ 275 (507)
++|||++..+ ....+.+.. ...... +.+. .... . +.....+++||||+|++.++.++
T Consensus 355 l~SAT~~~~i--------~~~~p~i~~v~~~~~~~-i~~~--~~~~-~---------l~~~~~~~vLVFv~Tr~~ae~la 413 (666)
T 3o8b_A 355 LATATPPGSV--------TVPHPNIEEVALSNTGE-IPFY--GKAI-P---------IEAIRGGRHLIFCHSKKKCDELA 413 (666)
T ss_dssp EEESSCTTCC--------CCCCTTEEEEECBSCSS-EEET--TEEE-C---------GGGSSSSEEEEECSCHHHHHHHH
T ss_pred EECCCCCccc--------ccCCcceEEEeecccch-hHHH--Hhhh-h---------hhhccCCcEEEEeCCHHHHHHHH
Confidence 8899998742 122222211 111111 1110 0000 0 12235678999999999999999
Q ss_pred HHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEE----------EeC-----------
Q 010563 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----------HFN----------- 334 (507)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI----------~~~----------- 334 (507)
+.|++.|+.+..+||+|++++ |.++..+|||||+++++|||+| |++|| |||
T Consensus 414 ~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~ 485 (666)
T 3o8b_A 414 AKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTT 485 (666)
T ss_dssp HHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEE
T ss_pred HHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccccc
Confidence 999999999999999999865 4566679999999999999996 99999 566
Q ss_pred CCCCHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 010563 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (507)
Q Consensus 335 ~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~ 369 (507)
+|.|.++|+||+||+|| |++|. +.||++.|...
T Consensus 486 ~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 486 VPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred CcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99998776443
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.6e-36 Score=312.15 Aligned_cols=267 Identities=15% Similarity=0.111 Sum_probs=182.4
Q ss_pred cCCCEEEEcCCCchHHHHHHHHHh----cCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcC
Q 010563 52 SGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~lp~l----~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (507)
+|+++++++|||+|||++|++|++ ..+.+++|++||++|+.|+.+.++ |+.+....+... .. .
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~---------~~--~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQ---------SE--R 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC-------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCcc---------cc--C
Confidence 478999999999999999988887 456799999999999999988886 455544332211 01 1
Q ss_pred CCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhh
Q 010563 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 128 ~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
.+...+.+++... +...+.......++++|||||||++..+ +......+..+. ..++.++++||||+++..
T Consensus 68 ~~~~~~~~~~~~~-----l~~~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 68 TGNEIVDFMCHST-----FTMKLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp -CCCSEEEEEHHH-----HHHHHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTCC
T ss_pred CCCceEEEEchHH-----HHHHHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcch
Confidence 1122233333222 2223333344677999999999997332 222223333332 235889999999998743
Q ss_pred HHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeE
Q 010563 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (507)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~ 287 (507)
.. +... ++.+...... ........+..++... ++++||||+++++++.+++.|++.|+.+..
T Consensus 139 ~~-----~~~~----------~~~i~~~~~~--~~~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 139 EA-----FPPS----------NSPIIDEETR--IPDKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CS-----SCCC----------SSCCEEEECC--CCSSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hh-----hcCC----------CCceeecccc--CCHHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 21 1111 1111110000 0011112233344443 458999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccE-----------------EEEeCCCCCHHHHHHHhcccC
Q 010563 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL-----------------VCHFNIPKSMEAFYQESGRAG 350 (507)
Q Consensus 288 ~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~-----------------VI~~~~p~s~~~y~Q~~GRag 350 (507)
+||+ +|.+++++|++|+++|||||+++++|||+| +.. ||+++.|.++++|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 544 688899999999999999999
Q ss_pred CCCCCceEEEEec
Q 010563 351 RDQLPSKSLLYYG 363 (507)
Q Consensus 351 R~g~~~~~i~~~~ 363 (507)
|.|..+.++++|.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9996555555554
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.1e-34 Score=326.82 Aligned_cols=315 Identities=17% Similarity=0.175 Sum_probs=227.8
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhc---C--CCeEEEecChHHHHHHHHHHH-HHcCCceEEec
Q 010563 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGL-KEKGIAGEFLS 109 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~~lp~l~---~--~~~~lvi~P~~~L~~q~~~~l-~~~gi~~~~~~ 109 (507)
+|+|+|.+++..++.. ..+++.++||+|||++++..+.. . .+++|||+|+ +|+.||...+ +.+++++..++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~~ 231 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALFD 231 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEECC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEEc
Confidence 6899999999998864 47889999999999988765532 2 3489999999 9999999999 55888877765
Q ss_pred CCCCHHHHHHHHHHhhcCCCcccEEEECcccccCh-hhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 010563 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~-~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 188 (507)
+.... .............+++++|++.+... .....+. ...+++|||||||++..++......|..+..+.
T Consensus 232 ~~~~~----~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~----~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~ 303 (968)
T 3dmq_A 232 DERYA----EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLC----EAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA 303 (968)
T ss_dssp HHHHH----HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHH----TSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH
T ss_pred cchhh----hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhh----hcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh
Confidence 33211 11111112223478999999987543 2222222 235899999999999877665556677777665
Q ss_pred HhCCCCCEEEEeecCChhhHHHHHHHhCCCCC------------------------------------------------
Q 010563 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNP------------------------------------------------ 220 (507)
Q Consensus 189 ~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~------------------------------------------------ 220 (507)
.. ...+++||||+.++...++...+.+..|
T Consensus 304 ~~--~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~ 381 (968)
T 3dmq_A 304 EH--VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQD 381 (968)
T ss_dssp TT--CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTC
T ss_pred hc--CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchh
Confidence 43 3458999999864221111111000000
Q ss_pred ----------------------------------eEEec------cCC-CCceEEEEE----------------------
Q 010563 221 ----------------------------------LVLKS------SFN-RPNLFYEVR---------------------- 237 (507)
Q Consensus 221 ----------------------------------~~~~~------~~~-~~ni~~~v~---------------------- 237 (507)
..+.. .+. +....+.+.
T Consensus 382 ~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (968)
T 3dmq_A 382 IEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE 461 (968)
T ss_dssp SSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG
T ss_pred hHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH
Confidence 00000 000 000000000
Q ss_pred ---------------------eecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHh-CCCceeEecCCCCHH
Q 010563 238 ---------------------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDK 295 (507)
Q Consensus 238 ---------------------~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~-~g~~~~~~h~~l~~~ 295 (507)
.......+...|.++++...+.++||||++++.++.++..|.+ .|+++..+||+|+..
T Consensus 462 ~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~ 541 (968)
T 3dmq_A 462 DRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSII 541 (968)
T ss_dssp GGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTT
T ss_pred HHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 0001124677888888887788999999999999999999995 599999999999999
Q ss_pred HHHHHHHHHhcCC--ceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEec
Q 010563 296 ARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (507)
Q Consensus 296 ~R~~~~~~f~~g~--~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~ 363 (507)
+|..++++|++|+ ++|||||+++++|+|+|++++||++++|+++..|.|++||+||.|+.+.+++++.
T Consensus 542 ~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 542 ERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp HHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred HHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 9999999999998 9999999999999999999999999999999999999999999999887766643
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.3e-34 Score=309.81 Aligned_cols=288 Identities=15% Similarity=0.186 Sum_probs=205.8
Q ss_pred HHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcC
Q 010563 48 QAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (507)
Q Consensus 48 ~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (507)
...++|++++++||||+|||+ ..+..+...+..+|++|+++|+.|+.+++++.|+++..+.++... .....
T Consensus 150 ar~l~rk~vlv~apTGSGKT~-~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~--------iv~Tp 220 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY-HAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV--------TVQPN 220 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH-HHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE--------CCSTT
T ss_pred HHhcCCCEEEEEcCCCCCHHH-HHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE--------EecCC
Confidence 344678999999999999998 444445445667999999999999999999999998887765432 00011
Q ss_pred CCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC--CCCCEEEEeecCCh
Q 010563 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAP 205 (507)
Q Consensus 128 ~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~--~~~~~i~lSAT~~~ 205 (507)
....+++.+|+|.+.. ...+++|||||||++.+.+ |...+..+ .... ++.+++++|||.
T Consensus 221 Gr~~~il~~T~e~~~l------------~~~v~lvVIDEaH~l~d~~--~g~~~~~~---l~~l~~~~i~il~~SAT~-- 281 (677)
T 3rc3_A 221 GKQASHVSCTVEMCSV------------TTPYEVAVIDEIQMIRDPA--RGWAWTRA---LLGLCAEEVHLCGEPAAI-- 281 (677)
T ss_dssp CCCCSEEEEEGGGCCS------------SSCEEEEEECSGGGGGCTT--THHHHHHH---HHHCCEEEEEEEECGGGH--
T ss_pred CcccceeEecHhHhhh------------cccCCEEEEecceecCCcc--chHHHHHH---HHccCccceEEEeccchH--
Confidence 1135677777776542 2347999999999997755 55444432 2333 367788888883
Q ss_pred hhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCce
Q 010563 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (507)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~ 285 (507)
.....+....+ ....+........+.+ .... + ..+.... ...||||+|+++++.+++.|.+.|+.+
T Consensus 282 ~~i~~l~~~~~--~~~~v~~~~r~~~l~~--~~~~-----l----~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v 347 (677)
T 3rc3_A 282 DLVMELMYTTG--EEVEVRDYKRLTPISV--LDHA-----L----ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLES 347 (677)
T ss_dssp HHHHHHHHHHT--CCEEEEECCCSSCEEE--CSSC-----C----CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhcC--CceEEEEeeecchHHH--HHHH-----H----HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCe
Confidence 33444444442 2222222111111111 1000 0 0111222 345899999999999999999999999
Q ss_pred eEecCCCCHHHHHHHHHHHhc--CCceEEEEeCcccccccCCCccEEEEeCC--------------CCCHHHHHHHhccc
Q 010563 286 AAYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNI--------------PKSMEAFYQESGRA 349 (507)
Q Consensus 286 ~~~h~~l~~~~R~~~~~~f~~--g~~~VLVaT~a~~~GiD~p~v~~VI~~~~--------------p~s~~~y~Q~~GRa 349 (507)
..+||+|++++|..+++.|++ |+++|||||+++++|||+ ++++||++++ |.|..+|+||+|||
T Consensus 348 ~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRA 426 (677)
T 3rc3_A 348 AVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRA 426 (677)
T ss_dssp EEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTB
T ss_pred eeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCC
Confidence 999999999999999999999 889999999999999999 8999999999 77999999999999
Q ss_pred CCCCCC---ceEEEEeccchHHHHHHHHHhccc
Q 010563 350 GRDQLP---SKSLLYYGMDDRRRMEFILSKNQS 379 (507)
Q Consensus 350 gR~g~~---~~~i~~~~~~d~~~~~~~~~~~~~ 379 (507)
||.|.. |.|+.+ ...|...++.++.....
T Consensus 427 GR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~ 458 (677)
T 3rc3_A 427 GRFSSRFKEGEVTTM-NHEDLSLLKEILKRPVD 458 (677)
T ss_dssp TCTTSSCSSEEEEES-STTHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCEEEEEE-ecchHHHHHHHHhcCcc
Confidence 999964 555544 45566677777665443
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=8.4e-33 Score=292.10 Aligned_cols=299 Identities=15% Similarity=0.141 Sum_probs=210.7
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHhc-----CCCeEEEecChHHHHHHHHHHHHHcC--Cce
Q 010563 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG--IAG 105 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~----~g~d~lv~apTG~GKTl~~~lp~l~-----~~~~~lvi~P~~~L~~q~~~~l~~~g--i~~ 105 (507)
..|+|+|.++++++. .++++++.++||+|||++++..+.. ..+++|||+| .+|+.||.++++++. .++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 369999999998874 5788999999999999886543321 2468999999 578899999999963 455
Q ss_pred EEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHH
Q 010563 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (507)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~ 185 (507)
...++.... ......+++++|++.+..... + ....+++||+||||.+...+. ...
T Consensus 115 ~~~~g~~~~-----------~~~~~~~ivi~t~~~l~~~~~---l----~~~~~~~vIvDEaH~~kn~~~-------~~~ 169 (500)
T 1z63_A 115 AVFHEDRSK-----------IKLEDYDIILTTYAVLLRDTR---L----KEVEWKYIVIDEAQNIKNPQT-------KIF 169 (500)
T ss_dssp EECSSSTTS-----------CCGGGSSEEEEEHHHHTTCHH---H----HTCCEEEEEEETGGGGSCTTS-------HHH
T ss_pred EEEecCchh-----------ccccCCcEEEeeHHHHhccch---h----cCCCcCEEEEeCccccCCHhH-------HHH
Confidence 554443311 111247899999998866432 1 223489999999999976541 223
Q ss_pred HHHHhCCCCCEEEEeecCChhhHHHHHHHhCCC----------------------------------CCeEEecc-----
Q 010563 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQ----------------------------------NPLVLKSS----- 226 (507)
Q Consensus 186 ~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~----------------------------------~~~~~~~~----- 226 (507)
.....++....++||||+..+...++...+.+. .+.+++..
T Consensus 170 ~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~ 249 (500)
T 1z63_A 170 KAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKA 249 (500)
T ss_dssp HHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHH
T ss_pred HHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccc
Confidence 333445666789999999776555544332211 12222211
Q ss_pred --CCCCceEEEEEeecch--------------------------------------------------------hhHHHH
Q 010563 227 --FNRPNLFYEVRYKDLL--------------------------------------------------------DDAYAD 248 (507)
Q Consensus 227 --~~~~ni~~~v~~~~~~--------------------------------------------------------~~~~~~ 248 (507)
...|.........+.. ..+...
T Consensus 250 ~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~ 329 (500)
T 1z63_A 250 IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIR 329 (500)
T ss_dssp HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHH
T ss_pred hhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHH
Confidence 1122222222211110 123333
Q ss_pred HHHHHHh--cCCccEEEEeccchhHHHHHHHHHhC-CCceeEecCCCCHHHHHHHHHHHhcC-Cce-EEEEeCccccccc
Q 010563 249 LCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGID 323 (507)
Q Consensus 249 l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-VLVaT~a~~~GiD 323 (507)
+.+++.. ..+.++||||+++..++.+++.|.+. |+.+..+||+++.++|.+++++|++| ..+ +|++|+++++|+|
T Consensus 330 l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gln 409 (500)
T 1z63_A 330 TMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGIN 409 (500)
T ss_dssp HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCC
T ss_pred HHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCc
Confidence 4444443 25678999999999999999999886 99999999999999999999999988 555 7999999999999
Q ss_pred CCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEE
Q 010563 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (507)
Q Consensus 324 ~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~ 361 (507)
+++++.||++++|+|+..|.|++||++|.|+...+.+|
T Consensus 410 l~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 410 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp CTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred hhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 99999999999999999999999999999987776544
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.6e-30 Score=272.99 Aligned_cols=322 Identities=18% Similarity=0.189 Sum_probs=229.5
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---CCCeEEEecChHHHHHHHHHHHHH---
Q 010563 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (507)
Q Consensus 27 ~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---~~~~~lvi~P~~~L~~q~~~~l~~--- 100 (507)
.++.++.+|.. +++.|.-..-.+..|+ ++.|.||.|||+++.+|++. .+..+.||+|+..|+.+-.+.+..
T Consensus 65 REAa~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 65 REAARRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp HHHHHHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHH
Confidence 34557778876 6788988888888887 89999999999999999874 466799999999999987777655
Q ss_pred -cCCceEEecCC--------------------------------------------------CCHHHHHHHHHHhhcCCC
Q 010563 101 -KGIAGEFLSST--------------------------------------------------QTMQVKTKIYEDLDSGKP 129 (507)
Q Consensus 101 -~gi~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~~~~ 129 (507)
+|+.+..+.+. .+..++...+
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY-------- 213 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY-------- 213 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--------
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--------
Confidence 69999888762 1112222222
Q ss_pred cccEEEECcccccChhhHHHHH---hhhccCCccEEEEeccccccc-----------cCCCCHHHHHHHHH---------
Q 010563 130 SLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISS-----------WGHDFRPSYRKLSS--------- 186 (507)
Q Consensus 130 ~~~il~~tpe~~~t~~~~~~l~---~~~~~~~l~~iViDEaH~i~~-----------~g~~fr~~~~~l~~--------- 186 (507)
..+|.|+|.--+.-......+. ...-...+.+.||||+|.++= -..+-...|..+..
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 1568888765443222222220 111234588999999988731 00000111111110
Q ss_pred ---------------------------------------------HHHh--C----------------------------
Q 010563 187 ---------------------------------------------LRNY--L---------------------------- 191 (507)
Q Consensus 187 ---------------------------------------------l~~~--~---------------------------- 191 (507)
++.. +
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 1110 0
Q ss_pred ------------------C----------------CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEE-
Q 010563 192 ------------------P----------------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV- 236 (507)
Q Consensus 192 ------------------~----------------~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v- 236 (507)
+ -..+.+||+|+.... ..+.+.+++. ++..+.++|......
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l~---vv~IPtnkp~~R~d~~ 449 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEE-SEFVQVYGME---VVVIPTHKPMIRKDHD 449 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGH-HHHHHHSCCC---EEECCCSSCCCCEECC
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHH-HHHHHHhCCe---EEEECCCCCcceeecC
Confidence 0 114899999998754 5566666543 555566777554432
Q ss_pred --EeecchhhHHHHHHHHHHhc--CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEE
Q 010563 237 --RYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (507)
Q Consensus 237 --~~~~~~~~~~~~l~~~l~~~--~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VL 312 (507)
.+. ...+++..+.+.+... .+.++||||+|++.++.++..|.+.|+++..+||++...++..+..+++.| .|+
T Consensus 450 d~vy~-t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~Vt 526 (822)
T 3jux_A 450 DLVFR-TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVT 526 (822)
T ss_dssp CEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEE
T ss_pred cEEEe-cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEE
Confidence 222 3357788888777652 466899999999999999999999999999999997666666666666666 599
Q ss_pred EEeCcccccccCC--------CccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 010563 313 VATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (507)
Q Consensus 313 VaT~a~~~GiD~p--------~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d 366 (507)
|||+++|+|+|++ ++.+||++++|.|.+.|.||+||+||.|.+|.+++|++.+|
T Consensus 527 VATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 527 IATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 9999999999998 55699999999999999999999999999999999999887
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=3.7e-30 Score=278.85 Aligned_cols=310 Identities=14% Similarity=0.147 Sum_probs=208.2
Q ss_pred CCcHHHHHHHHHHH---------cCCCEEEEcCCCchHHHHHHHHHh---cC-------CCeEEEecChHHHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPAL---AK-------PGIVLVVSPLIALMENQVIGL 98 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~---------~g~d~lv~apTG~GKTl~~~lp~l---~~-------~~~~lvi~P~~~L~~q~~~~l 98 (507)
.|||+|.+++.++. .++.+|+..+||.|||+..+..+. .. ..++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 59999999999985 345689999999999987655442 11 2469999997 8889999999
Q ss_pred HHc-C--CceEEecCCCCHHHHHHHHHHhhcC--CCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc
Q 010563 99 KEK-G--IAGEFLSSTQTMQVKTKIYEDLDSG--KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (507)
Q Consensus 99 ~~~-g--i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~ 173 (507)
.++ + +....+.++................ .....++++|++.+.. .........+++||+||||++...
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~------~~~~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRL------HAEVLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHH------HTTTTTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHh------hHHHhhcCCccEEEEECceecCCh
Confidence 885 2 4455555443322222222222221 1236788888876532 122233445899999999999764
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCC-----------------------------------
Q 010563 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ----------------------------------- 218 (507)
Q Consensus 174 g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~----------------------------------- 218 (507)
. .........++....++||||+-.+...++...+.+-
T Consensus 208 ~-------~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 208 D-------NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp C-------HHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred h-------hHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 3 2222222333566789999999765422221111000
Q ss_pred -----------CCeEEecc-----CCCCceEEEEEeec------------------------------------------
Q 010563 219 -----------NPLVLKSS-----FNRPNLFYEVRYKD------------------------------------------ 240 (507)
Q Consensus 219 -----------~~~~~~~~-----~~~~ni~~~v~~~~------------------------------------------ 240 (507)
.+.+++.. ...|.....+....
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 00011100 00111111111100
Q ss_pred -----------------------------------chhhHHHHHHHHH---HhcCCccEEEEeccchhHHHHHHHHHhCC
Q 010563 241 -----------------------------------LLDDAYADLCSVL---KANGDTCAIVYCLERTTCDELSAYLSAGG 282 (507)
Q Consensus 241 -----------------------------------~~~~~~~~l~~~l---~~~~~~~~IVf~~s~~~~~~l~~~L~~~g 282 (507)
....++..+..++ +...+.++||||+++..++.++..|...|
T Consensus 361 ~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g 440 (644)
T 1z3i_X 361 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 440 (644)
T ss_dssp HCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC
Confidence 0011222233333 33456789999999999999999999999
Q ss_pred CceeEecCCCCHHHHHHHHHHHhcCCc---eEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEE
Q 010563 283 ISCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (507)
Q Consensus 283 ~~~~~~h~~l~~~~R~~~~~~f~~g~~---~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i 359 (507)
+.+..+||+++.++|..++++|++|+. .+|++|.++|+|||+++++.||++|+|+|+..|.|++||++|.|+...+.
T Consensus 441 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 441 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceE
Confidence 999999999999999999999999865 48999999999999999999999999999999999999999999877655
Q ss_pred EE
Q 010563 360 LY 361 (507)
Q Consensus 360 ~~ 361 (507)
+|
T Consensus 521 v~ 522 (644)
T 1z3i_X 521 IY 522 (644)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-30 Score=283.45 Aligned_cols=311 Identities=19% Similarity=0.182 Sum_probs=217.3
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHh------cCCCeEEEecChHHHHHHHHHHHHHc--CCc
Q 010563 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKEK--GIA 104 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~----~g~d~lv~apTG~GKTl~~~lp~l------~~~~~~lvi~P~~~L~~q~~~~l~~~--gi~ 104 (507)
..|||+|.+++.+++ .++++|+..+||.|||+..+..+. ...+.+|||+| .+|+.||.+.+.++ ++.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 369999999998876 788999999999999987654432 24678999999 68889999999986 355
Q ss_pred eEEecCCCCHHHHHHHHHHhh------cCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCH
Q 010563 105 GEFLSSTQTMQVKTKIYEDLD------SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (507)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (507)
+...++............... ......+++++|++.+.... ..+. ...+++|||||||.+...+
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~--~~l~----~~~w~~vIvDEaH~lkn~~---- 383 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR--AELG----SIKWQFMAVDEAHRLKNAE---- 383 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH--HHHH----TSEEEEEEETTGGGGCCSS----
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH--HHHh----cCCcceeehhhhhhhcCch----
Confidence 555554433222211111100 12235789999998775421 1122 2248999999999997644
Q ss_pred HHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCe-------------------------------EEecc-
Q 010563 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-------------------------------VLKSS- 226 (507)
Q Consensus 179 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~-------------------------------~~~~~- 226 (507)
..+......++....++|||||..+...++...+.+-.|. +++..
T Consensus 384 ---s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 384 ---SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp ---SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred ---hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 2333344445556689999999766555554443322221 11110
Q ss_pred ----CCCCceEEEEEeecc-------------------------------------------------------------
Q 010563 227 ----FNRPNLFYEVRYKDL------------------------------------------------------------- 241 (507)
Q Consensus 227 ----~~~~ni~~~v~~~~~------------------------------------------------------------- 241 (507)
...|.....+.....
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 001111111111100
Q ss_pred -------------hhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhc
Q 010563 242 -------------LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (507)
Q Consensus 242 -------------~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (507)
...++..|.+++.. ..+.++||||..+..++.|...|...|+.+..+||+++..+|..++++|++
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 01233344455543 245689999999999999999999999999999999999999999999998
Q ss_pred CCc---eEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEE
Q 010563 307 SRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (507)
Q Consensus 307 g~~---~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~ 361 (507)
+.. .+|++|.++|.|||++.++.||++|+|+|+..+.|++||++|.|+...+.+|
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 654 4999999999999999999999999999999999999999999987666554
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=6.9e-28 Score=261.00 Aligned_cols=201 Identities=21% Similarity=0.275 Sum_probs=150.7
Q ss_pred cEEEEeccccc-cccCCCCHHHHHHHHHHHHhC-------------------CCCCEEEEeecCChhhHHHHHHHhCCCC
Q 010563 160 NLVAIDEAHCI-SSWGHDFRPSYRKLSSLRNYL-------------------PDVPILALTATAAPKVQKDVMESLCLQN 219 (507)
Q Consensus 160 ~~iViDEaH~i-~~~g~~fr~~~~~l~~l~~~~-------------------~~~~~i~lSAT~~~~~~~~i~~~l~~~~ 219 (507)
.+|||||+|++ .+|++.++..+..+..+...- ...+++++|||+++..... .
T Consensus 327 ~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~----~---- 398 (664)
T 1c4o_A 327 FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH----S---- 398 (664)
T ss_dssp CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHH----C----
T ss_pred cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHHh----h----
Confidence 57899999986 456666666665555544321 1456899999998654321 0
Q ss_pred CeEEecc-----CCCCceEEEEEeecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCC
Q 010563 220 PLVLKSS-----FNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (507)
Q Consensus 220 ~~~~~~~-----~~~~ni~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l 292 (507)
..+.... ...|. ..+... ......+...+.. ..+.++||||+|++.++.+++.|.+.|+++..+||++
T Consensus 399 ~~~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~ 473 (664)
T 1c4o_A 399 GRVVEQIIRPTGLLDPL--VRVKPT---ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHEL 473 (664)
T ss_dssp SEEEEECSCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred hCeeeeeeccCCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCC
Confidence 1111111 11222 222221 2233333333322 2456899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCC-----CCCHHHHHHHhcccCCCCCCceEEEEeccchH
Q 010563 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (507)
Q Consensus 293 ~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~-----p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~ 367 (507)
++.+|..++++|++|+++|||||+++++|+|+|++++||+++. |.|..+|+||+|||||.| +|.+++|++..+.
T Consensus 474 ~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 474 DAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSE 552 (664)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCH
T ss_pred CHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCH
Confidence 9999999999999999999999999999999999999999998 899999999999999996 8999999998776
Q ss_pred HHHHHHH
Q 010563 368 RRMEFIL 374 (507)
Q Consensus 368 ~~~~~~~ 374 (507)
...+.+.
T Consensus 553 ~~~~~i~ 559 (664)
T 1c4o_A 553 AMQRAIE 559 (664)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 59
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=4.2e-27 Score=224.45 Aligned_cols=192 Identities=19% Similarity=0.229 Sum_probs=153.0
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-----------CCCeEE
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIVL 82 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~-----------~~~~~l 82 (507)
...|+++++++.+.+.|++ +||..|+|+|.++++.++.|+|+++.+|||+|||++|++|++. .++++|
T Consensus 28 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~l 106 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL 106 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEE
T ss_pred cCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEE
Confidence 4567888999999999998 7999999999999999999999999999999999999999874 256799
Q ss_pred EecChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH-HhhhccC
Q 010563 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRG 157 (507)
Q Consensus 83 vi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l-~~~~~~~ 157 (507)
|++|+++|+.|+.+.++++ ++....+.++........... . ..+++++||+.+.. .+ .......
T Consensus 107 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---~~~I~v~Tp~~l~~-----~l~~~~~~~~ 175 (242)
T 3fe2_A 107 VLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R---GVEICIATPGRLID-----FLECGKTNLR 175 (242)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H---CCSEEEECHHHHHH-----HHHHTSCCCT
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C---CCCEEEECHHHHHH-----HHHcCCCCcc
Confidence 9999999999998888774 788888888777655433322 2 26788888886632 12 1223456
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEEe
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (507)
.+++|||||||++.+|| |++.+..+ ...+ ++.+++++|||+++.+...+...+ .+|..+.
T Consensus 176 ~~~~lViDEah~l~~~~--~~~~~~~i---~~~~~~~~q~~~~SAT~~~~~~~~~~~~l--~~~~~i~ 236 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMG--FEPQIRKI---VDQIRPDRQTLMWSATWPKEVRQLAEDFL--KDYIHIN 236 (242)
T ss_dssp TCCEEEETTHHHHHHTT--CHHHHHHH---HTTSCSSCEEEEEESCCCHHHHHHHHHHC--SSCEEEE
T ss_pred cccEEEEeCHHHHhhhC--cHHHHHHH---HHhCCccceEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 78999999999999998 88777766 3333 578999999999999887666655 4665544
No 60
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=2.4e-27 Score=265.44 Aligned_cols=322 Identities=12% Similarity=0.071 Sum_probs=203.9
Q ss_pred CChHHHHHHHHHHhcC------CCCCcHHHHHHHHHHHc--------------CCCEEEEcCCCchHHHHHHHHHhc---
Q 010563 20 LHEKEALVKLLRWHFG------HAQFRDKQLDAIQAVLS--------------GRDCFCLMPTGGGKSMCYQIPALA--- 76 (507)
Q Consensus 20 ~~l~~~l~~~l~~~fg------~~~~r~~Q~~~i~~i~~--------------g~d~lv~apTG~GKTl~~~lp~l~--- 76 (507)
+...+.+...+....- .-.|||+|.+|++.++. ++++++++|||+|||+++ ++++.
T Consensus 247 ~~~~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~ 325 (1038)
T 2w00_A 247 CFQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLAT 325 (1038)
T ss_dssp TTSHHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHT
T ss_pred hhchHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHH
Confidence 3445667777776321 12499999999999875 368999999999999987 33321
Q ss_pred ---CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhh
Q 010563 77 ---KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153 (507)
Q Consensus 77 ---~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~ 153 (507)
...++|||+|+++|+.|+.+.++.++... +..+.+... ....+... ..+|+++||..+... .......
T Consensus 326 ~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~--v~~~~s~~~---l~~~L~~~--~~~IiVtTiqkl~~~--l~~~~~~ 396 (1038)
T 2w00_A 326 ELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDS--VNGSENTAG---LKRNLDKD--DNKIIVTTIQKLNNL--MKAESDL 396 (1038)
T ss_dssp TCTTCCEEEEEECGGGCCHHHHHHHHTTSTTC--SSSSCCCHH---HHHHHHCS--SCCEEEEEHHHHHHH--HHHCCCC
T ss_pred hcCCCceEEEEeCcHHHHHHHHHHHHHhcccc--cccccCHHH---HHHHhcCC--CCCEEEEEHHHHHHH--Hhcccch
Confidence 13589999999999999999999876432 222222222 12223222 367888887765321 0000001
Q ss_pred hccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhH----HHHHHHhCCCCCeEEecc---
Q 010563 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLCLQNPLVLKSS--- 226 (507)
Q Consensus 154 ~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~----~~i~~~l~~~~~~~~~~~--- 226 (507)
.......+||+||||+... | .....++..+|+.++++||||+..... ......++- .+...+
T Consensus 397 ~~~~~~~lvIiDEAHrs~~-~-------~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~---~i~~Y~l~~ 465 (1038)
T 2w00_A 397 PVYNQQVVFIFDECHRSQF-G-------EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGR---ELHSYVITD 465 (1038)
T ss_dssp GGGGSCEEEEEESCCTTHH-H-------HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCS---EEEEECHHH
T ss_pred hccccccEEEEEccchhcc-h-------HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCC---eeEeecHHH
Confidence 1223478999999999642 2 123456778899999999999975321 111222221 111100
Q ss_pred -----CCCCce-EEEE-Eee--------c-------------chhhHHHHHHH-HHH---hc--------CCccEEEEec
Q 010563 227 -----FNRPNL-FYEV-RYK--------D-------------LLDDAYADLCS-VLK---AN--------GDTCAIVYCL 266 (507)
Q Consensus 227 -----~~~~ni-~~~v-~~~--------~-------------~~~~~~~~l~~-~l~---~~--------~~~~~IVf~~ 266 (507)
+-.|-. .|.. ... + ..+.....+.. ++. .. .+.++||||+
T Consensus 466 AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~ 545 (1038)
T 2w00_A 466 AIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVS 545 (1038)
T ss_dssp HHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEES
T ss_pred HHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEEC
Confidence 001100 0000 000 0 01112222222 222 11 2357999999
Q ss_pred cchhHHHHHHHHHhCC------------Cce-eEecCC----------C----------CH-------------------
Q 010563 267 ERTTCDELSAYLSAGG------------ISC-AAYHAG----------L----------ND------------------- 294 (507)
Q Consensus 267 s~~~~~~l~~~L~~~g------------~~~-~~~h~~----------l----------~~------------------- 294 (507)
|++.|..+++.|.+.+ +++ ..+|++ + ++
T Consensus 546 S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~ 625 (1038)
T 2w00_A 546 SVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKT 625 (1038)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcc
Confidence 9999999999997754 454 456653 2 22
Q ss_pred ----------HHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCC----ceEEE
Q 010563 295 ----------KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP----SKSLL 360 (507)
Q Consensus 295 ----------~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~----~~~i~ 360 (507)
.+|..++++|++|+++|||+|+++.+|+|+|.+ .++.+|.|.+...|+|++||++|.+.. |..+.
T Consensus 626 ~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVd 704 (1038)
T 2w00_A 626 NFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVT 704 (1038)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEE
T ss_pred cccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEE
Confidence 148889999999999999999999999999999 678899999999999999999998753 44444
Q ss_pred Eec
Q 010563 361 YYG 363 (507)
Q Consensus 361 ~~~ 363 (507)
|.+
T Consensus 705 f~~ 707 (1038)
T 2w00_A 705 FRD 707 (1038)
T ss_dssp SSC
T ss_pred ccc
Confidence 443
No 61
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=7.7e-27 Score=208.69 Aligned_cols=151 Identities=21% Similarity=0.372 Sum_probs=136.4
Q ss_pred cCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHh
Q 010563 226 SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (507)
Q Consensus 226 ~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 305 (507)
+...+++...+...+ ..+++..|.++++....+++||||++++.++.+++.|.+.|+.+..+||+|++.+|..++++|+
T Consensus 4 ~~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp --CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 345667766655543 3678899999998888889999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 010563 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 306 ~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~ 377 (507)
+|+.+|||||+++++|+|+|++++||++++|.++..|+||+||+||.|++|.+++|+.+.|...++.+.+..
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~ 154 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYI 154 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988887776543
No 62
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=2.8e-26 Score=248.23 Aligned_cols=202 Identities=20% Similarity=0.255 Sum_probs=145.1
Q ss_pred cEEEEeccccccc-cCCCCHHHHHHHHHHHHhC-------------------CCCCEEEEeecCChhhHHHHHHHhCCCC
Q 010563 160 NLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-------------------PDVPILALTATAAPKVQKDVMESLCLQN 219 (507)
Q Consensus 160 ~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~-------------------~~~~~i~lSAT~~~~~~~~i~~~l~~~~ 219 (507)
.+|||||+|++.+ |+..++.....+..+.... ...+++++|||+++..... . ..
T Consensus 333 ~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~-----~-~~ 406 (661)
T 2d7d_A 333 FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEH-----T-DE 406 (661)
T ss_dssp CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEECSSCCHHHHHH-----C-SS
T ss_pred cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEEecCCChhHHHh-----h-hC
Confidence 4899999999652 3322232222222222210 2567899999998654321 0 11
Q ss_pred CeEEe-c--cCCCCceEEEEEeecchhhHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCH
Q 010563 220 PLVLK-S--SFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 294 (507)
Q Consensus 220 ~~~~~-~--~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~ 294 (507)
..... . ....|. +.+... ......+...+.. ..+.++||||+|+..++.+++.|.+.|+++..+||++++
T Consensus 407 ~~~~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~ 481 (661)
T 2d7d_A 407 MVEQIIRPTGLLDPL--IDVRPI---EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKT 481 (661)
T ss_dssp CEEECCCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCH
T ss_pred eeeeeecccCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCH
Confidence 11110 0 111222 222221 2233344333332 245689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEeCcccccccCCCccEEEEeCC-----CCCHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 010563 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (507)
Q Consensus 295 ~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v~~VI~~~~-----p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~ 369 (507)
.+|..++++|++|+++|||||+++++|+|+|++++||+++. |.|.++|+||+|||||. .+|.+++|+++.+...
T Consensus 482 ~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 482 LERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSM 560 (661)
T ss_dssp HHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHH
T ss_pred HHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHH
Confidence 99999999999999999999999999999999999999997 99999999999999998 6899999999877655
Q ss_pred HHHH
Q 010563 370 MEFI 373 (507)
Q Consensus 370 ~~~~ 373 (507)
.+.+
T Consensus 561 ~~~i 564 (661)
T 2d7d_A 561 EIAI 564 (661)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=4.7e-27 Score=221.97 Aligned_cols=190 Identities=21% Similarity=0.305 Sum_probs=142.8
Q ss_pred CCC-CChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------------CCCeEEE
Q 010563 17 NKP-LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPGIVLV 83 (507)
Q Consensus 17 ~~~-~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------------~~~~~lv 83 (507)
|++ +++++.+.+.|.+ +||.+|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .+.++||
T Consensus 21 f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~li 99 (228)
T 3iuy_A 21 FKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLV 99 (228)
T ss_dssp HHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEE
T ss_pred HhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEE
Confidence 444 5778899999998 6999999999999999999999999999999999999999874 4667999
Q ss_pred ecChHHHHHHHHHHHHHc---CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCcc
Q 010563 84 VSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN 160 (507)
Q Consensus 84 i~P~~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~ 160 (507)
++|+++|+.|+.+.++++ ++....+.++....... ..+.. ..+++++||+.+... ..........++
T Consensus 100 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~iiv~Tp~~l~~~----~~~~~~~~~~~~ 169 (228)
T 3iuy_A 100 LTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISK---GVDIIIATPGRLNDL----QMNNSVNLRSIT 169 (228)
T ss_dssp ECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHS---CCSEEEECHHHHHHH----HHTTCCCCTTCC
T ss_pred EeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcC---CCCEEEECHHHHHHH----HHcCCcCcccce
Confidence 999999999999999985 56677666655433322 12222 267888888865331 111223356689
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHHHHHHhCCCCCeEE
Q 010563 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (507)
Q Consensus 161 ~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (507)
+|||||||++.+|| |++.+..+ +....++.+++++|||+++.+...+.. .+.+|..+
T Consensus 170 ~lViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~--~l~~p~~i 226 (228)
T 3iuy_A 170 YLVIDEADKMLDME--FEPQIRKI--LLDVRPDRQTVMTSATWPDTVRQLALS--YLKDPMIV 226 (228)
T ss_dssp EEEECCHHHHHHTT--CHHHHHHH--HHHSCSSCEEEEEESCCCHHHHHHHHT--TCSSCEEE
T ss_pred EEEEECHHHHhccc--hHHHHHHH--HHhCCcCCeEEEEEeeCCHHHHHHHHH--HCCCCEEE
Confidence 99999999999988 88877766 333345789999999999998775444 34566543
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=1.5e-26 Score=217.08 Aligned_cols=198 Identities=16% Similarity=0.213 Sum_probs=147.9
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEecChH
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P~~ 88 (507)
..|+++++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. ..++||++|++
T Consensus 4 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp CCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 357788999999999988 79999999999999999999999999999999999999999753 46899999999
Q ss_pred HHHHHHHHHHHHc--------CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCc
Q 010563 89 ALMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLL 159 (507)
Q Consensus 89 ~L~~q~~~~l~~~--------gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l 159 (507)
+|+.|+.+.++++ ++.+..+.++..... .........+++++||+.+.. .+. .......+
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~Iiv~Tp~~l~~-----~l~~~~~~~~~~ 151 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK------ALEKLNVQPHIVIGTPGRIND-----FIREQALDVHTA 151 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH------TTCCCSSCCSEEEECHHHHHH-----HHHTTCCCGGGC
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH------HHHHcCCCCCEEEeCHHHHHH-----HHHcCCCCcCcc
Confidence 9999999998875 566666666543221 111112246788888886642 111 12234558
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCc
Q 010563 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN 231 (507)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~n 231 (507)
+++||||||++.+|| |.. .+..+...++ +.+++++|||+++.+.+.+... +.+|..+....++++
T Consensus 152 ~~lViDEah~~~~~~--~~~---~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~~ 217 (219)
T 1q0u_A 152 HILVVDEADLMLDMG--FIT---DVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY--MENPTFVHVLEHHHH 217 (219)
T ss_dssp CEEEECSHHHHHHTT--CHH---HHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH--CSSCEEEECC-----
T ss_pred eEEEEcCchHHhhhC--hHH---HHHHHHHhCCcccEEEEEecCCCHHHHHHHHHH--cCCCeEEEeeccccc
Confidence 999999999999988 554 4445555555 6889999999999887755554 467777766555543
No 65
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.7e-26 Score=207.67 Aligned_cols=148 Identities=21% Similarity=0.336 Sum_probs=131.4
Q ss_pred CceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCc
Q 010563 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (507)
Q Consensus 230 ~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~ 309 (507)
+++...+...+....++..|.++++....+++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|+.
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~ 85 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE 85 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSC
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 45655555555545689999999988888899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCcccccccCCCccEEEEeCCC------CCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 010563 310 QVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (507)
Q Consensus 310 ~VLVaT~a~~~GiD~p~v~~VI~~~~p------~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~ 377 (507)
+|||||+++++|+|+|++++||+|++| .+...|+||+||+||.|+.|.+++|+.+.|...+..+.+..
T Consensus 86 ~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~ 159 (175)
T 2rb4_A 86 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHF 159 (175)
T ss_dssp SEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHH
T ss_pred eEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHh
Confidence 999999999999999999999999999 99999999999999999999999999999988887776654
No 66
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=222.47 Aligned_cols=185 Identities=24% Similarity=0.325 Sum_probs=141.2
Q ss_pred ccCCCCCC--hHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----------CCCeE
Q 010563 14 TQKNKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIV 81 (507)
Q Consensus 14 ~~~~~~~~--l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----------~~~~~ 81 (507)
...|+.+. +++.+.+.|++ +||..|+++|.++++.++.|+|++++||||+|||++|++|++. .+.++
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 129 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGV 129 (262)
T ss_dssp GGCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred cCChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceE
Confidence 34455555 88999999998 8999999999999999999999999999999999999999884 36689
Q ss_pred EEecChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhc
Q 010563 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHS 155 (507)
Q Consensus 82 lvi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~ 155 (507)
||++|+++|+.|+.+.++++ ++....+.++........ .+..+ .+|+++||+.+.. .+.. ...
T Consensus 130 lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~---~~Iiv~Tp~~l~~-----~~~~~~~~~ 198 (262)
T 3ly5_A 130 LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG---INIIVATPGRLLD-----HMQNTPGFM 198 (262)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC---CSEEEECHHHHHH-----HHHHCTTCC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC---CCEEEEcHHHHHH-----HHHccCCcc
Confidence 99999999999999999985 455666666665443322 22222 6788888876522 1221 124
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHh
Q 010563 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l 215 (507)
...+++|||||||++.+|| |++.+..+ ...++ +.++++||||+++.+.......+
T Consensus 199 ~~~l~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 199 YKNLQCLVIDEADRILDVG--FEEELKQI---IKLLPTRRQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp CTTCCEEEECSHHHHHHTT--CHHHHHHH---HHHSCSSSEEEEECSSCCHHHHHHHHHHC
T ss_pred cccCCEEEEcChHHHhhhh--HHHHHHHH---HHhCCCCCeEEEEEecCCHHHHHHHHHHc
Confidence 5668999999999999998 88776655 34444 68899999999999877554443
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=2.7e-26 Score=217.96 Aligned_cols=192 Identities=21% Similarity=0.305 Sum_probs=147.5
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----------CCCeEE
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVL 82 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----------~~~~~l 82 (507)
....|+++++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++. .+.++|
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 34568889999999999988 7999999999999999999999999999999999999999874 256899
Q ss_pred EecChHHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhcc
Q 010563 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (507)
Q Consensus 83 vi~P~~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~ 156 (507)
|++|+++|+.|+.+.++.++ +.+..+.++......... + ...+++++||+.+.. .+.. ....
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~----~~~~iiv~Tp~~l~~-----~l~~~~~~~~ 169 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---I----NNINILVCTPGRLLQ-----HMDETVSFHA 169 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---H----TTCSEEEECHHHHHH-----HHHHCSSCCC
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---C----CCCCEEEECHHHHHH-----HHHhcCCccc
Confidence 99999999999999999865 667666666543332221 1 136888888886632 2222 2334
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEe
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (507)
..+++||+||||++.+|| |.+.+. .+...++ +.+++++|||+++.+.. .....+.+|..+.
T Consensus 170 ~~~~~lViDEah~~~~~~--~~~~~~---~i~~~~~~~~~~l~~SAT~~~~~~~--~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMG--FADTMN---AVIENLPKKRQTLLFSATQTKSVKD--LARLSLKNPEYVW 231 (236)
T ss_dssp TTCCEEEETTHHHHHHTT--THHHHH---HHHHTSCTTSEEEEEESSCCHHHHH--HHHHSCSSCEEEE
T ss_pred ccccEEEEeChHHHhcCC--cHHHHH---HHHHhCCCCCeEEEEEeeCCHHHHH--HHHHhCCCCEEEE
Confidence 568999999999999988 665444 4455555 67899999999998776 3344566776654
No 68
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=4.5e-26 Score=211.62 Aligned_cols=189 Identities=23% Similarity=0.231 Sum_probs=147.2
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEecChH
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P~~ 88 (507)
..|+++++++++.+.|++ +|+..|+|+|.++++.+++|+|+++.+|||+|||++|++|++.. ..++||++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 458889999999999998 79999999999999999999999999999999999999998752 45799999999
Q ss_pred HHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccEE
Q 010563 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (507)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~i 162 (507)
+|+.|+.+.++++ ++.+....++........ .+. ...+++++||+.+.. .+. .......++++
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~l 150 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RLD---DTVHVVIATPGRILD-----LIKKGVAKVDHVQMI 150 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HTT---SCCSEEEECHHHHHH-----HHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hcC---CCCCEEEeCHHHHHH-----HHHcCCcCcccCCEE
Confidence 9999999998875 566777777665543221 222 247899999887532 221 22235568999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeE
Q 010563 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (507)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~ 222 (507)
|+||||++.+++ |++.+..+ ...++ +.+++++|||+++.+.+.+...+ .+|..
T Consensus 151 ViDEah~~~~~~--~~~~l~~i---~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~~ 204 (206)
T 1vec_A 151 VLDEADKLLSQD--FVQIMEDI---ILTLPKNRQILLYSATFPLSVQKFMNSHL--EKPYE 204 (206)
T ss_dssp EEETHHHHTSTT--THHHHHHH---HHHSCTTCEEEEEESCCCHHHHHHHHHHC--SSCEE
T ss_pred EEEChHHhHhhC--cHHHHHHH---HHhCCccceEEEEEeeCCHHHHHHHHHHc--CCCeE
Confidence 999999998865 66555444 45555 78999999999998877666655 45543
No 69
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.94 E-value=2.4e-26 Score=220.12 Aligned_cols=194 Identities=24% Similarity=0.304 Sum_probs=151.8
Q ss_pred ccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEec
Q 010563 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (507)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~ 85 (507)
.....|+.+++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. ..++||++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred cccCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 345678889999999999988 79999999999999999999999999999999999999998752 45799999
Q ss_pred ChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhccCCc
Q 010563 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (507)
Q Consensus 86 P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~~~~l 159 (507)
|+++|+.|+.+.++++ ++.+..+.++......... +.. ..+|+++||+.+.. .+.. ......+
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~---~~~I~v~Tp~~l~~-----~l~~~~~~~l~~~ 187 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA---LAK---KPHIIIATPGRLID-----HLENTKGFNLRAL 187 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHH---HHT---CCSEEEECHHHHHH-----HHHHSTTCCCTTC
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHH---hcC---CCCEEEECHHHHHH-----HHHcCCCcCcccc
Confidence 9999999999998875 7888888877665443222 122 37888888886532 2221 2235668
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEe
Q 010563 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (507)
Q Consensus 160 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (507)
++||+||||++.+|+ |++.+..+ ...++ +.++++||||+++.+.+.+... +.+|..+.
T Consensus 188 ~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~~~l~~SAT~~~~v~~~~~~~--l~~p~~i~ 246 (249)
T 3ber_A 188 KYLVMDEADRILNMD--FETEVDKI---LKVIPRDRKTFLFSATMTKKVQKLQRAA--LKNPVKCA 246 (249)
T ss_dssp CEEEECSHHHHHHTT--CHHHHHHH---HHSSCSSSEEEEEESSCCHHHHHHHHHH--CSSCEEEE
T ss_pred CEEEEcChhhhhccC--hHHHHHHH---HHhCCCCCeEEEEeccCCHHHHHHHHHH--CCCCEEEE
Confidence 999999999999987 88766655 34444 7889999999999887754444 45676553
No 70
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=4.5e-26 Score=212.64 Aligned_cols=137 Identities=27% Similarity=0.404 Sum_probs=128.0
Q ss_pred hhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccccc
Q 010563 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (507)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (507)
...++..|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 36788999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcc
Q 010563 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (507)
Q Consensus 322 iD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~ 378 (507)
||+|++++||++++|.|++.|+||+||+||.|++|.|++|+++.|...++.+.+...
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999988888776543
No 71
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=3.7e-26 Score=204.66 Aligned_cols=134 Identities=21% Similarity=0.380 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccc
Q 010563 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (507)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (507)
..+...|.++++....+++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 15 ~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~ 94 (165)
T 1fuk_A 15 EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 94 (165)
T ss_dssp GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTC
T ss_pred hhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCC
Confidence 44889999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 323 D~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
|+|++++||++++|.++..|+||+||+||.|++|.|++|+++.|...+..+.+.
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~ 148 (165)
T 1fuk_A 95 DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKF 148 (165)
T ss_dssp CCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHH
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888776654
No 72
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=7.7e-26 Score=203.93 Aligned_cols=134 Identities=18% Similarity=0.364 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccc
Q 010563 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (507)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (507)
.++...|.++++....+++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 16 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 95 (172)
T 1t5i_A 16 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 95 (172)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCc
Confidence 57889999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccc-hHHHHHHHHHh
Q 010563 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSK 376 (507)
Q Consensus 323 D~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~-d~~~~~~~~~~ 376 (507)
|+|++++||+|++|.|++.|+||+||+||.|+.|.+++|+++. +...++.+.+.
T Consensus 96 di~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~ 150 (172)
T 1t5i_A 96 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 150 (172)
T ss_dssp CGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHH
T ss_pred chhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876 45556655543
No 73
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=1.2e-25 Score=211.12 Aligned_cols=192 Identities=15% Similarity=0.196 Sum_probs=147.4
Q ss_pred cCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEecChH
Q 010563 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (507)
Q Consensus 15 ~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P~~ 88 (507)
..|+++++++.+.+.|.+ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. ..++||++|++
T Consensus 14 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 458999999999999988 79999999999999999999999999999999999999999753 34899999999
Q ss_pred HHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccEE
Q 010563 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (507)
Q Consensus 89 ~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~i 162 (507)
+|+.|+.+.++++ ++++..+.++.......... ..+ ..+++++||+.+.. .+. .......++++
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~l 162 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKN--CPHIVVGTPGRILA-----LARNKSLNLKHIKHF 162 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---HHS--CCSEEEECHHHHHH-----HHHTTSSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH---hcC--CCCEEEeCHHHHHH-----HHHhCCCCcccCCEE
Confidence 9999999999886 67888888877655443322 222 25788888886532 111 12235568999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEE
Q 010563 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (507)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (507)
|+||||++.++. .|+..+ ..+....+ +.+++++|||+++.+.+... ..+.+|..+
T Consensus 163 ViDEah~~~~~~-~~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~--~~~~~p~~i 218 (220)
T 1t6n_A 163 ILDECDKMLEQL-DMRRDV---QEIFRMTPHEKQVMMFSATLSKEIRPVCR--KFMQDPMEI 218 (220)
T ss_dssp EEESHHHHHSSH-HHHHHH---HHHHHTSCSSSEEEEEESCCCTTTHHHHH--TTCSSCEEE
T ss_pred EEcCHHHHhccc-CcHHHH---HHHHHhCCCcCeEEEEEeecCHHHHHHHH--HHcCCCeEE
Confidence 999999998741 255444 44445555 78899999999998776433 344566544
No 74
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.94 E-value=7.2e-26 Score=213.13 Aligned_cols=191 Identities=19% Similarity=0.254 Sum_probs=143.3
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEecC
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~P 86 (507)
....|+.+++++.+.+.|++ +|+..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. ...++||++|
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 90 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEEC
Confidence 34568889999999999998 7999999999999999999999999999999999999999984 3568999999
Q ss_pred hHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccE
Q 010563 87 LIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNL 161 (507)
Q Consensus 87 ~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~ 161 (507)
+++|+.|+.+.++++ ++.+....++........ .+ ...+++++||+.+.. .+. .......+++
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~----~~~~iiv~Tp~~l~~-----~~~~~~~~~~~~~~ 158 (224)
T 1qde_A 91 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GL----RDAQIVVGTPGRVFD-----NIQRRRFRTDKIKM 158 (224)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C----TTCSEEEECHHHHHH-----HHHTTSSCCTTCCE
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cC----CCCCEEEECHHHHHH-----HHHhCCcchhhCcE
Confidence 999999999999885 566666665544322211 11 126788888886532 121 2233566899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEE
Q 010563 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (507)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (507)
||+||||++.+|+ |+..+..+ ...+ ++.+++++|||+++.+...+...+ .+|..+
T Consensus 159 iViDEah~~~~~~--~~~~l~~i---~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~p~~i 214 (224)
T 1qde_A 159 FILDEADEMLSSG--FKEQIYQI---FTLLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRI 214 (224)
T ss_dssp EEEETHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEEESSCCHHHHHHHHHHC--SSCEEE
T ss_pred EEEcChhHHhhhh--hHHHHHHH---HHhCCccCeEEEEEeecCHHHHHHHHHHC--CCCEEE
Confidence 9999999999987 66655544 3334 478899999999998877655544 456554
No 75
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.94 E-value=8.7e-26 Score=213.60 Aligned_cols=191 Identities=18% Similarity=0.230 Sum_probs=146.9
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC------CCeEEEecCh
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~------~~~~lvi~P~ 87 (507)
...|+.+++++.+.+.|++ +||..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. ..++||++|+
T Consensus 23 ~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 101 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPT 101 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 3568888999999999988 79999999999999999999999999999999999999998742 4689999999
Q ss_pred HHHHHHHHHHHHHc-----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccE
Q 010563 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNL 161 (507)
Q Consensus 88 ~~L~~q~~~~l~~~-----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~ 161 (507)
++|+.|+.+.++++ ++++..+.++......... + ...+++++||+.+.. .+. .......+++
T Consensus 102 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~----~~~~Iiv~Tp~~l~~-----~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 102 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR---L----KKCHIAVGSPGRIKQ-----LIELDYLNPGSIRL 169 (230)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH---T----TSCSEEEECHHHHHH-----HHHTTSSCGGGCCE
T ss_pred HHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh---c----cCCCEEEECHHHHHH-----HHhcCCcccccCCE
Confidence 99999999999986 5677777777665443322 1 137888888886532 111 1223455889
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEE
Q 010563 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (507)
Q Consensus 162 iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (507)
||+||||++.+||. |++.+..+ ...++ +.+++++|||+++.+.+.+.. .+.+|..+
T Consensus 170 lViDEah~~~~~~~-~~~~~~~i---~~~~~~~~~~l~lSAT~~~~~~~~~~~--~~~~p~~i 226 (230)
T 2oxc_A 170 FILDEADKLLEEGS-FQEQINWI---YSSLPASKQMLAVSATYPEFLANALTK--YMRDPTFV 226 (230)
T ss_dssp EEESSHHHHHSTTS-SHHHHHHH---HHHSCSSCEEEEEESCCCHHHHHHHTT--TCSSCEEE
T ss_pred EEeCCchHhhcCcc-hHHHHHHH---HHhCCCCCeEEEEEeccCHHHHHHHHH--HcCCCeEE
Confidence 99999999999873 77665544 44555 778999999999887654433 24566554
No 76
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.94 E-value=9.1e-26 Score=214.49 Aligned_cols=192 Identities=19% Similarity=0.264 Sum_probs=141.7
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc------CCCeEEEecCh
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~------~~~~~lvi~P~ 87 (507)
...|+.+++++.+.+.|.+ +||..|+++|.++++.+++|+|+++.+|||+|||++|++|++. ...++||++|+
T Consensus 29 ~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 107 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPT 107 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECc
Confidence 4568889999999999987 7999999999999999999999999999999999999999975 34689999999
Q ss_pred HHHHHHHHHHHHHcC----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccEE
Q 010563 88 IALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (507)
Q Consensus 88 ~~L~~q~~~~l~~~g----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~i 162 (507)
++|+.|+.+.++.++ +.+....++..... ....+..+ ..+++++||+.+.. .+. .......+++|
T Consensus 108 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~--~~~Ilv~Tp~~l~~-----~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 108 RELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAE--APHIVVGTPGRVFD-----MLNRRYLSPKWIKMF 177 (237)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECC----------------C--CCSEEEECHHHHHH-----HHHTTSSCSTTCCEE
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcC--CCCEEEECHHHHHH-----HHHhCCcCcccCcEE
Confidence 999999999998863 45555554433221 11222222 26788888876532 121 22334568999
Q ss_pred EEeccccccccCCCCHHHHHHHHHHHHhC-CCCCEEEEeecCChhhHHHHHHHhCCCCCeEE
Q 010563 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (507)
Q Consensus 163 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (507)
|+||||++.+|| |+..+..+ ...+ ++.+++++|||+++.+.+.+...+ .+|..+
T Consensus 178 ViDEah~~~~~~--~~~~l~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~l--~~p~~i 232 (237)
T 3bor_A 178 VLDEADEMLSRG--FKDQIYEI---FQKLNTSIQVVLLSATMPTDVLEVTKKFM--RDPIRI 232 (237)
T ss_dssp EEESHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEECSSCCHHHHHHHHHHC--SSCEEE
T ss_pred EECCchHhhccC--cHHHHHHH---HHhCCCCCeEEEEEEecCHHHHHHHHHHC--CCCEEE
Confidence 999999999987 66555443 3444 478999999999999887666554 466554
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=204.93 Aligned_cols=148 Identities=22% Similarity=0.390 Sum_probs=119.3
Q ss_pred CCCceEEEEEeecchhhHHHHHHHHHHhc-CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhc
Q 010563 228 NRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (507)
Q Consensus 228 ~~~ni~~~v~~~~~~~~~~~~l~~~l~~~-~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 306 (507)
..+++...+...+ ..++...|.++++.. .+.++||||++++.++.+++.|...|+.+..+||+|++.+|..++++|++
T Consensus 16 ~~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 16 TSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp CCTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 3556766665543 357888899998876 46789999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 010563 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (507)
Q Consensus 307 g~~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~ 376 (507)
|+++|||||+++++|+|+|++++||++++|.|+..|+||+||+||.|+.|.+++|+++.|...++.+.+.
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 164 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDL 164 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987776666553
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.93 E-value=2e-25 Score=207.23 Aligned_cols=189 Identities=19% Similarity=0.226 Sum_probs=144.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc---------CCCeEEEecC
Q 010563 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------KPGIVLVVSP 86 (507)
Q Consensus 16 ~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~---------~~~~~lvi~P 86 (507)
.|+++++++.+.+.|++ +|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++. ...++||++|
T Consensus 2 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 36778899999999998 7999999999999999999999999999999999999999874 2467999999
Q ss_pred hHHHHHHHHHHHHHcC--CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-hhhccCCccEEE
Q 010563 87 LIALMENQVIGLKEKG--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLVA 163 (507)
Q Consensus 87 ~~~L~~q~~~~l~~~g--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~~~~~~~l~~iV 163 (507)
+++|+.|+.+.+++++ ++...+.++......... +.. ..+++++||+.+.. .+. .......++++|
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~iV 149 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEA---LLR---GADAVVATPGRALD-----YLRQGVLDLSRVEVAV 149 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHH---HHH---CCSEEEECHHHHHH-----HHHHTSSCCTTCSEEE
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHH---hhC---CCCEEEECHHHHHH-----HHHcCCcchhhceEEE
Confidence 9999999999999963 566666666554332222 122 26788888876532 121 223456689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEE
Q 010563 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (507)
Q Consensus 164 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~ 223 (507)
+||||++.+++ |+..+..+ ....+ +.+++++|||+++.+.+..... +.+|.++
T Consensus 150 iDEah~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~p~~i 203 (207)
T 2gxq_A 150 LDEADEMLSMG--FEEEVEAL---LSATPPSRQTLLFSATLPSWAKRLAERY--MKNPVLI 203 (207)
T ss_dssp EESHHHHHHTT--CHHHHHHH---HHTSCTTSEEEEECSSCCHHHHHHHHHH--CSSCEEE
T ss_pred EEChhHhhccc--hHHHHHHH---HHhCCccCeEEEEEEecCHHHHHHHHHH--cCCCeEE
Confidence 99999998877 66655544 44444 7889999999998876644443 3566554
No 79
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.93 E-value=1.1e-25 Score=215.96 Aligned_cols=196 Identities=19% Similarity=0.231 Sum_probs=147.4
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------------
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~--------------- 77 (507)
+...|+.+++++.+.+.|.+ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++..
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 44568888999999999987 79999999999999999999999999999999999999998732
Q ss_pred CCeEEEecChHHHHHHHHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHH-h
Q 010563 78 PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K 152 (507)
Q Consensus 78 ~~~~lvi~P~~~L~~q~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~-~ 152 (507)
..++||++|+++|+.|+.+.++.+ ++....+.++........ .+. ...+|+++||+.+.. .+. .
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~~Ivv~Tp~~l~~-----~l~~~ 168 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQ---MGCHLLVATPGRLVD-----FIEKN 168 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHS---SCCSEEEECHHHHHH-----HHHTT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhC---CCCCEEEECHHHHHH-----HHHcC
Confidence 258999999999999999998885 456666666654433221 222 236888888886532 221 1
Q ss_pred hhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC--CCCEEEEeecCChhhHHHHHHHhCCCCCeEEe
Q 010563 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (507)
Q Consensus 153 ~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~--~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (507)
......+++||+||||++.+|| |++.+..+........ +.+++++|||+++.+.......+ .+|..+.
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~ 238 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL--YNYIFMT 238 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC--SSCEEEE
T ss_pred CCChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEEE
Confidence 2235568999999999999988 8877766543222222 57899999999998877555544 4665543
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.6e-25 Score=212.36 Aligned_cols=190 Identities=22% Similarity=0.239 Sum_probs=138.0
Q ss_pred ChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc-------CCCeEEEecChHHHHHH
Q 010563 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMEN 93 (507)
Q Consensus 21 ~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~-------~~~~~lvi~P~~~L~~q 93 (507)
++++.+.+.|.+ +||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .+.++||++|+++|+.|
T Consensus 35 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 35 KINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH
Confidence 678899999998 6999999999999999999999999999999999999999974 34579999999999999
Q ss_pred HHHHHHHc----CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh---hhccCCccEEEEec
Q 010563 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDE 166 (507)
Q Consensus 94 ~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~---~~~~~~l~~iViDE 166 (507)
+.+.++++ ++....+.++. .... ..........+++++||+.+.. .+.. ......+++|||||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~I~v~Tp~~l~~-----~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 114 IHRELIKISEGTGFRIHMIHKAA---VAAK--KFGPKSSKKFDILVTTPNRLIY-----LLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp HHHHHHHHTTTSCCCEECCCHHH---HHHT--TTSTTSCCCCCEEEECHHHHHH-----HHHSSSCSCCCTTCCEEEESS
T ss_pred HHHHHHHHhcccCceEEEEecCc---cHHH--HhhhhhcCCCCEEEECHHHHHH-----HHHhCCCCcccccCcEEEEeC
Confidence 99999986 44443332211 1100 0011112346788888876532 2222 23455689999999
Q ss_pred cccccccC-CCCHHHHHHHHHHHHh-CCCCCEEEEeecCChhhHHHHHHHhCCCCCeEEec
Q 010563 167 AHCISSWG-HDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (507)
Q Consensus 167 aH~i~~~g-~~fr~~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~ 225 (507)
||++.+|+ ..|+..+..+ +... .++.++++||||+++.+.+.+... +.+|..+..
T Consensus 184 ah~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~SAT~~~~v~~~~~~~--l~~p~~i~~ 240 (245)
T 3dkp_A 184 SDKLFEDGKTGFRDQLASI--FLACTSHKVRRAMFSATFAYDVEQWCKLN--LDNVISVSI 240 (245)
T ss_dssp HHHHHHHC--CHHHHHHHH--HHHCCCTTCEEEEEESSCCHHHHHHHHHH--SSSCEEEEE
T ss_pred hHHhcccccccHHHHHHHH--HHhcCCCCcEEEEEeccCCHHHHHHHHHh--CCCCEEEEe
Confidence 99999986 3477666655 2222 247899999999999887755444 356765543
No 81
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=5.3e-25 Score=201.70 Aligned_cols=144 Identities=19% Similarity=0.361 Sum_probs=123.5
Q ss_pred CCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCC
Q 010563 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (507)
Q Consensus 229 ~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~ 308 (507)
.+++...+...+ ...+...|.+++...+ +++||||++++.++.+++.|+..|+.+..+||+|++.+|..+++.|++|+
T Consensus 27 ~~~i~q~~~~~~-~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~ 104 (191)
T 2p6n_A 27 SLDVIQEVEYVK-EEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK 104 (191)
T ss_dssp -CCSEEEEEECC-GGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CcCceEEEEEcC-hHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 345555555443 3578888998888754 57999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccc-hHHHHHHHH
Q 010563 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFIL 374 (507)
Q Consensus 309 ~~VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~-d~~~~~~~~ 374 (507)
.+|||||+++++|+|+|++++||+|++|.+++.|+||+||+||.|+.|.+++|+++. |...++.+.
T Consensus 105 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~ 171 (191)
T 2p6n_A 105 KDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLK 171 (191)
T ss_dssp CSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876 555444443
No 82
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.93 E-value=2.3e-25 Score=219.03 Aligned_cols=192 Identities=18% Similarity=0.231 Sum_probs=143.4
Q ss_pred cccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcC------CCeEE
Q 010563 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVL 82 (507)
Q Consensus 11 ~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~~lp~l~~------~~~~l 82 (507)
..+...|+.+++++.+.+.|.. +||..|+++|.++|+.++.| +|+++.+|||+|||++|++|++.. ..++|
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~l 166 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 166 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred cCCcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEE
Confidence 4455678889999999999998 79999999999999999998 999999999999999999999842 34799
Q ss_pred EecChHHHHHHHHHHHHHcC-----CceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHh--hhc
Q 010563 83 VVSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHS 155 (507)
Q Consensus 83 vi~P~~~L~~q~~~~l~~~g-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~--~~~ 155 (507)
|++||++|+.|+.+.++.++ +......++..... ......+|+++||+.+. ..+.+ ...
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~IlV~TP~~l~-----~~l~~~~~~~ 232 (300)
T 3fmo_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTVL-----DWCSKLKFID 232 (300)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT---------TCCCCCSEEEECHHHHH-----HHHTTTCCCC
T ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh---------hhcCCCCEEEECHHHHH-----HHHHhcCCCC
Confidence 99999999999998888853 44555544432111 01123568777777542 12211 233
Q ss_pred cCCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CCCEEEEeecCChhhHHHHHHHhCCCCCeEEe
Q 010563 156 RGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (507)
Q Consensus 156 ~~~l~~iViDEaH~i~~-~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~ 224 (507)
...+++|||||||++.+ +| |...+..+ ...++ +.++++||||++..+....... +.+|.++.
T Consensus 233 l~~l~~lVlDEad~l~~~~~--~~~~~~~i---~~~~~~~~q~i~~SAT~~~~v~~~a~~~--l~~p~~i~ 296 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMIATQG--HQDQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQKV--VPDPNVIK 296 (300)
T ss_dssp GGGCSEEEETTHHHHHHSTT--HHHHHHHH---HTTSCTTCEEEEEESCCCHHHHHHHHHH--SSSCEEEE
T ss_pred hhhceEEEEeCHHHHhhccC--cHHHHHHH---HHhCCCCCEEEEEeccCCHHHHHHHHHH--CCCCeEEE
Confidence 45689999999999987 55 66555544 34443 6899999999999988755444 45676554
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=1.4e-24 Score=212.25 Aligned_cols=136 Identities=26% Similarity=0.396 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccc
Q 010563 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (507)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~Gi 322 (507)
.++++.|.++++...++++||||++++.++.+++.|.+.|+.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 13 ~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gi 92 (300)
T 3i32_A 13 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGL 92 (300)
T ss_dssp SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCST
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCc
Confidence 57889999999887788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcc
Q 010563 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (507)
Q Consensus 323 D~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~~~~ 378 (507)
|+|++++||++++|.|.+.|+||+||+||.|++|.|++|+++.|...++.+.+...
T Consensus 93 di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 93 DIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp TCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred cccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999888888776543
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=8.6e-27 Score=209.88 Aligned_cols=145 Identities=23% Similarity=0.302 Sum_probs=128.6
Q ss_pred ceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCce
Q 010563 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (507)
Q Consensus 231 ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~ 310 (507)
++.+.+...+....+...|.++++...++++||||++++.++.+++.|++.|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 44433333333256777888888877778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 010563 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (507)
Q Consensus 311 VLVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~~~~~d~~~~~~~~~ 375 (507)
|||||+++++|+|+|++++||++++|.|+..|+||+||+||.|+.|.+++++...|...++.+.+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 99999999999999999999999999999999999999999999999999999888777665554
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=3.2e-22 Score=213.95 Aligned_cols=324 Identities=21% Similarity=0.202 Sum_probs=223.7
Q ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEecChHHHHHHHHHHHHH--
Q 010563 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE-- 100 (507)
Q Consensus 26 l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l---~~~~~~lvi~P~~~L~~q~~~~l~~-- 100 (507)
+.++.++.+|+ .|++.|..+++.++.|+ ++.|+||+|||++|.+|++ ..+..++|++||+.|+.|..+.+..
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 34566778999 79999999999999998 9999999999999999995 3456799999999999998887666
Q ss_pred --cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH---HhhhccC---CccEEEEeccccccc
Q 010563 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRG---LLNLVAIDEAHCISS 172 (507)
Q Consensus 101 --~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l---~~~~~~~---~l~~iViDEaH~i~~ 172 (507)
+|+.+..+.++.....+...+ ..+|+|+||-.+.-......+ ....... .+.++||||+|.++.
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~~ay--------~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERRKAY--------LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHHHHH--------TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred HhcCCeEEEEeCCCCHHHHHHHc--------CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 589999998888765544433 267888887655311111111 0012344 689999999999862
Q ss_pred -cCC------------------------------------------CCH-------------------------HHH---
Q 010563 173 -WGH------------------------------------------DFR-------------------------PSY--- 181 (507)
Q Consensus 173 -~g~------------------------------------------~fr-------------------------~~~--- 181 (507)
-+. +|. +.|
T Consensus 217 DeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~ 296 (997)
T 2ipc_A 217 DEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPE 296 (997)
T ss_dssp SSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTT
T ss_pred hCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCch
Confidence 110 110 001
Q ss_pred -----HHHHH-HHH--hC------------------------C-------------------------------------
Q 010563 182 -----RKLSS-LRN--YL------------------------P------------------------------------- 192 (507)
Q Consensus 182 -----~~l~~-l~~--~~------------------------~------------------------------------- 192 (507)
..+.. ++. .+ |
T Consensus 297 n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr 376 (997)
T 2ipc_A 297 NMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFR 376 (997)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHH
Confidence 00000 000 00 0
Q ss_pred -CCCEEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEE---EEeecchhhHHHHHHHHHHh--cCCccEEEEec
Q 010563 193 -DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCL 266 (507)
Q Consensus 193 -~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~---v~~~~~~~~~~~~l~~~l~~--~~~~~~IVf~~ 266 (507)
-..+.+||+|+..+. ..+.+..++. ++..+.++|.+... ..+. ....++..+.+-+.. ..+.|+||+|.
T Consensus 377 ~Y~kLsGMTGTA~tE~-~Ef~~iY~l~---Vv~IPTn~p~~R~D~~d~vy~-t~~~K~~AIv~eI~~~~~~GqPVLVgT~ 451 (997)
T 2ipc_A 377 LYEKRAGMTGTAKTEE-KEFQEIYGMD---VVVVPTNRPVIRKDFPDVVYR-TEKGKFYAVVEEIAEKYERGQPVLVGTI 451 (997)
T ss_dssp TSSEEEEEESSCGGGH-HHHHHHHCCC---EEECCCSSCCCCEEEEEEEES-SHHHHHHHHHHHHHHHHHHTCCEEEECS
T ss_pred hChHheecCCCchHHH-HHHHHHhCCC---EEEcCCCCCcccccCCCeEEc-CHHHHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 013788999997654 4566666664 45566777776443 2232 235566665554433 24678999999
Q ss_pred cchhHHHHHHHHH-------------------------------------------------------------------
Q 010563 267 ERTTCDELSAYLS------------------------------------------------------------------- 279 (507)
Q Consensus 267 s~~~~~~l~~~L~------------------------------------------------------------------- 279 (507)
|.+.++.|+..|+
T Consensus 452 SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 531 (997)
T 2ipc_A 452 SIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLK 531 (997)
T ss_dssp SHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccc
Confidence 9999999999999
Q ss_pred ---------hCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcccccccCCCc-------------------c---
Q 010563 280 ---------AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV-------------------R--- 328 (507)
Q Consensus 280 ---------~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~GiD~p~v-------------------~--- 328 (507)
+.|++...+++.....+-+-|-+.=+ .-.|-|||+++|+|.|+.=- .
T Consensus 532 ~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~--~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~ 609 (997)
T 2ipc_A 532 RAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGR--SKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKV 609 (997)
T ss_dssp HHHHHHHHHHHCCCCCEECSSSHHHHHHHHHTTTS--TTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHH
T ss_pred hhhhhhHHHHcCCCeeeccccchHHHHHHHHhcCC--CCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccc
Confidence 45666666776654333222222212 24599999999999997421 1
Q ss_pred ----------------------------------------------------EEEEeCCCCCHHHHHHHhcccCCCCCCc
Q 010563 329 ----------------------------------------------------LVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (507)
Q Consensus 329 ----------------------------------------------------~VI~~~~p~s~~~y~Q~~GRagR~g~~~ 356 (507)
+||-...+.|..---|-.||+||.|.||
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPG 689 (997)
T 2ipc_A 610 ELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPG 689 (997)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCC
T ss_pred ccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCC
Confidence 7999999999999999999999999999
Q ss_pred eEEEEeccchH
Q 010563 357 KSLLYYGMDDR 367 (507)
Q Consensus 357 ~~i~~~~~~d~ 367 (507)
.+..|.+.+|-
T Consensus 690 sSrF~LSLeDd 700 (997)
T 2ipc_A 690 GSRFYVSFDDD 700 (997)
T ss_dssp EEEEEEESSSH
T ss_pred CeEEEEECChH
Confidence 99999987763
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=2.8e-22 Score=212.70 Aligned_cols=315 Identities=15% Similarity=0.152 Sum_probs=172.8
Q ss_pred hcCCCCCcHHHHHHHHH----HHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEe
Q 010563 33 HFGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (507)
Q Consensus 33 ~fg~~~~r~~Q~~~i~~----i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~ 108 (507)
..|| .+||+|.+++.+ +..|+++++.||||+|||++|++|++...++++|++||++|+.|+++.+..++++...+
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l 81 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFL 81 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEe
Confidence 3577 799999998755 45789999999999999999999999999999999999999999999999988887776
Q ss_pred cCCCCHHHHH-----------------------------HHHHHh------------hcCCCcccEEEECcccccChhhH
Q 010563 109 SSTQTMQVKT-----------------------------KIYEDL------------DSGKPSLRLLYVTPELTATPGFM 147 (507)
Q Consensus 109 ~~~~~~~~~~-----------------------------~~~~~~------------~~~~~~~~il~~tpe~~~t~~~~ 147 (507)
.+....-... ..+..+ .......+++++++..+..+...
T Consensus 82 ~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~ 161 (540)
T 2vl7_A 82 IGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIR 161 (540)
T ss_dssp ---------------------------------------------------------CTTGGGCSEEEEETHHHHSHHHH
T ss_pred cCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHH
Confidence 5432100000 000000 11112357888888887776544
Q ss_pred HHHHh---hhccCCccEEEEecccccccc----CC-----CCHHHHH---------------------------------
Q 010563 148 SKLKK---IHSRGLLNLVAIDEAHCISSW----GH-----DFRPSYR--------------------------------- 182 (507)
Q Consensus 148 ~~l~~---~~~~~~l~~iViDEaH~i~~~----g~-----~fr~~~~--------------------------------- 182 (507)
..+.. ........++||||||.+... +. ++...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~ 241 (540)
T 2vl7_A 162 NSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLIDYMSKLIKD 241 (540)
T ss_dssp HHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTSCCS
T ss_pred HhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 33220 001223679999999999431 00 0000001
Q ss_pred ------------------HHHHHHH------------------------------------hCC-------------CCC
Q 010563 183 ------------------KLSSLRN------------------------------------YLP-------------DVP 195 (507)
Q Consensus 183 ------------------~l~~l~~------------------------------------~~~-------------~~~ 195 (507)
.+..+.. ..| ...
T Consensus 242 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l~~~~~~~~~ 321 (540)
T 2vl7_A 242 GRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLIEDALNVKTF 321 (540)
T ss_dssp SSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHHHHHTCCSSC
T ss_pred ccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHHHHhcCccCC
Confidence 1111100 000 011
Q ss_pred EEEEeecCChhhHHHHHHHhCCCCCeEE--eccCCCCceEEE--EE-eecch----hhHHHHHHHHHHhcCCccEEEEec
Q 010563 196 ILALTATAAPKVQKDVMESLCLQNPLVL--KSSFNRPNLFYE--VR-YKDLL----DDAYADLCSVLKANGDTCAIVYCL 266 (507)
Q Consensus 196 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~~~ni~~~--v~-~~~~~----~~~~~~l~~~l~~~~~~~~IVf~~ 266 (507)
+|++|||+++. +++...... ...+....+... +. +-+.. ....+.|.+++.. .++.+|||++
T Consensus 322 ~IltSATL~p~--------~~~~~~f~~~~~~~~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~-~~g~~lvff~ 392 (540)
T 2vl7_A 322 KVLMSGTLPES--------LTLTNSYKIVVNESYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYEN-SSKSVLVFFP 392 (540)
T ss_dssp EEEEESSCCTT--------CCCTTEEEEECCCC-CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHT-CSSEEEEEES
T ss_pred eEEEcccCCCC--------cccchhcCCchhheecCCcceeccccCCCcccccCHHHHHHHHHHHHHHh-CCCCEEEEeC
Confidence 36666666661 000000000 000000000000 00 00000 1223334444444 4567999999
Q ss_pred cchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEE--EeCcccccccCCC----ccEEEEeCCCCC-H
Q 010563 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV--ATVAFGMGIDRKD----VRLVCHFNIPKS-M 339 (507)
Q Consensus 267 s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLV--aT~a~~~GiD~p~----v~~VI~~~~p~s-~ 339 (507)
|....+.+++.|.. .+ ...++.. .+|.+++++|+++. .||+ +|..+.+|||+|+ ++.||.+++|.. +
T Consensus 393 S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 393 SYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp CHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCCT
T ss_pred CHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCC
Confidence 99999999998865 33 4455554 46889999999865 5666 8899999999998 899999999941 1
Q ss_pred -----------------------------HHHHHHhcccCCCCCCceEEEEec
Q 010563 340 -----------------------------EAFYQESGRAGRDQLPSKSLLYYG 363 (507)
Q Consensus 340 -----------------------------~~y~Q~~GRagR~g~~~~~i~~~~ 363 (507)
..+.|.+||+-|....--++++.+
T Consensus 467 ~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 467 SDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp TSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred CCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 234799999999865444555554
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.84 E-value=2.5e-19 Score=190.69 Aligned_cols=313 Identities=15% Similarity=0.106 Sum_probs=197.6
Q ss_pred CCcHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHc----CCceEEec
Q 010563 38 QFRDKQLDAIQAV----LSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK----GIAGEFLS 109 (507)
Q Consensus 38 ~~r~~Q~~~i~~i----~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~----gi~~~~~~ 109 (507)
++||+|.+++.++ ..|+++++.||||+|||++|++|++....+++|++||++|+.|..+.++.+ ++++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~ 82 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLV 82 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEc
Confidence 5899999977654 578999999999999999999999998899999999999999999988886 66676665
Q ss_pred CCCCH---------------------------------HH-HHHHH-----------HHhhcCCCcccEEEECcccccCh
Q 010563 110 STQTM---------------------------------QV-KTKIY-----------EDLDSGKPSLRLLYVTPELTATP 144 (507)
Q Consensus 110 ~~~~~---------------------------------~~-~~~~~-----------~~~~~~~~~~~il~~tpe~~~t~ 144 (507)
+.... .. ..... ..........+|+++|+..+..+
T Consensus 83 gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~ 162 (551)
T 3crv_A 83 GKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFID 162 (551)
T ss_dssp CHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCH
T ss_pred cccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCH
Confidence 42110 00 00000 00011112468999988877766
Q ss_pred hhHHHHHhhhccCCccEEEEeccccccccCCC------------------------------------------------
Q 010563 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD------------------------------------------------ 176 (507)
Q Consensus 145 ~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~------------------------------------------------ 176 (507)
..... ........++||||||.+.+ ..+
T Consensus 163 ~~~~~---~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 238 (551)
T 3crv_A 163 RYREF---IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIKVE 238 (551)
T ss_dssp HHHTT---SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCEECS
T ss_pred HHHHh---cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 42211 11112357899999999865 210
Q ss_pred -----CHHHHH-------------------------HHHHHHH----------------------------hCCC--CCE
Q 010563 177 -----FRPSYR-------------------------KLSSLRN----------------------------YLPD--VPI 196 (507)
Q Consensus 177 -----fr~~~~-------------------------~l~~l~~----------------------------~~~~--~~~ 196 (507)
+..... .+..+.. .+.+ .++
T Consensus 239 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~sv 318 (551)
T 3crv_A 239 NVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNELSI 318 (551)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTTCEE
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccCceE
Confidence 000000 1111100 1122 578
Q ss_pred EEEeecCChhhHHHHHHHhCCCCCeE-------EeccCCCCceEEEEEee-c-----chhhHHHHH----HHHHHhcCCc
Q 010563 197 LALTATAAPKVQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRYK-D-----LLDDAYADL----CSVLKANGDT 259 (507)
Q Consensus 197 i~lSAT~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~ni~~~v~~~-~-----~~~~~~~~l----~~~l~~~~~~ 259 (507)
|++|||+++ ...+...+|+..+.. +..++ ..+....+... + ..+..+..+ .++++.. ++
T Consensus 319 IltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~-~g 394 (551)
T 3crv_A 319 ILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA-KA 394 (551)
T ss_dssp EEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC-SS
T ss_pred EEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC-CC
Confidence 999999997 566788888874432 12233 34443322211 1 001223333 3344433 45
Q ss_pred cEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEe--CcccccccCC-----CccEEEE
Q 010563 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT--VAFGMGIDRK-----DVRLVCH 332 (507)
Q Consensus 260 ~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT--~a~~~GiD~p-----~v~~VI~ 332 (507)
.++||++|....+.+++. .+.++..-..+++ +.++++.|+.+.--||+|| ..|.+|||+| ..+.||.
T Consensus 395 ~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI 468 (551)
T 3crv_A 395 NVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVI 468 (551)
T ss_dssp EEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEE
T ss_pred CEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEE
Confidence 799999999999999873 3444444333555 3556777854444799998 6999999999 3789999
Q ss_pred eCCCCC--------------------H----------HHHHHHhcccCCCCCCceEEEEecc
Q 010563 333 FNIPKS--------------------M----------EAFYQESGRAGRDQLPSKSLLYYGM 364 (507)
Q Consensus 333 ~~~p~s--------------------~----------~~y~Q~~GRagR~g~~~~~i~~~~~ 364 (507)
.++|.. . ....|-+||+-|....--++++.+.
T Consensus 469 ~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 469 VGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp ESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 988741 1 1125889999998765555556553
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=169.38 Aligned_cols=162 Identities=22% Similarity=0.227 Sum_probs=99.7
Q ss_pred cCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcC---------CCeEEEecChHHHHHH-HHHHHHHc--
Q 010563 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVSPLIALMEN-QVIGLKEK-- 101 (507)
Q Consensus 34 fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~---------~~~~lvi~P~~~L~~q-~~~~l~~~-- 101 (507)
.+...|+++|.++++.+++++++++.+|||+|||++|+++++.. .+++||++|+++|+.| +.+.++.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 45557999999999999999999999999999999999988742 6789999999999999 55666664
Q ss_pred -CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHH--HhhhccCCccEEEEeccccccccCCCCH
Q 010563 102 -GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (507)
Q Consensus 102 -gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l--~~~~~~~~l~~iViDEaH~i~~~g~~fr 178 (507)
++.+..+.++....... ..+.. ..+++++||+.+......... ........+++|||||||++...+ .++
T Consensus 109 ~~~~v~~~~g~~~~~~~~---~~~~~---~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~-~~~ 181 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISF---PEVVK---SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA-VYN 181 (216)
T ss_dssp TTSCEEECCC---CCCCH---HHHHH---HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHH
T ss_pred cCceEEEEeCCcccchhH---Hhhcc---CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCC-cHH
Confidence 45666655443221110 01111 267888888865321100000 000224558999999999997543 233
Q ss_pred HHHHHHHHHH--Hh---------CCCCCEEEEeec
Q 010563 179 PSYRKLSSLR--NY---------LPDVPILALTAT 202 (507)
Q Consensus 179 ~~~~~l~~l~--~~---------~~~~~~i~lSAT 202 (507)
..+..+.... .. .++.++++||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 182 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 3322221111 11 167889999998
No 89
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=3e-18 Score=162.29 Aligned_cols=139 Identities=23% Similarity=0.174 Sum_probs=109.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCc-eEEecCCCCHHH
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~-~~~~~~~~~~~~ 116 (507)
.++++|.+++..+++++++++++|||+|||++++.++......++|++|+++|+.|+.+.++++++. +..+.+...
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~--- 169 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK--- 169 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB---
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC---
Confidence 6899999999999999999999999999999999988888889999999999999999999999888 777765542
Q ss_pred HHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCE
Q 010563 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 196 (507)
...+++++|++.+... .... ...+++|||||||.+...+ |. .+...++..++
T Consensus 170 ------------~~~~i~v~T~~~l~~~-----~~~~--~~~~~llIiDEaH~l~~~~------~~---~i~~~~~~~~~ 221 (237)
T 2fz4_A 170 ------------ELKPLTVSTYDSAYVN-----AEKL--GNRFMLLIFDEVHHLPAES------YV---QIAQMSIAPFR 221 (237)
T ss_dssp ------------CCCSEEEEEHHHHHHT-----HHHH--TTTCSEEEEECSSCCCTTT------HH---HHHHTCCCSEE
T ss_pred ------------CcCCEEEEeHHHHHhh-----HHHh--cccCCEEEEECCccCCChH------HH---HHHHhccCCEE
Confidence 1357888887754321 1111 2348999999999997643 22 34556678889
Q ss_pred EEEeecCChhh
Q 010563 197 LALTATAAPKV 207 (507)
Q Consensus 197 i~lSAT~~~~~ 207 (507)
++||||+....
T Consensus 222 l~LSATp~r~D 232 (237)
T 2fz4_A 222 LGLTATFERED 232 (237)
T ss_dssp EEEEESCC---
T ss_pred EEEecCCCCCC
Confidence 99999998654
No 90
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.75 E-value=1.8e-18 Score=166.85 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHhc--CCccEEEEeccchhHHHHHHHHHhC-CCceeEecCCCCHHHHHHHHHHHhcC-Cce-EEEEeCc
Q 010563 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVA 317 (507)
Q Consensus 243 ~~~~~~l~~~l~~~--~~~~~IVf~~s~~~~~~l~~~L~~~-g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~-VLVaT~a 317 (507)
..|+..|.+++... .+.++||||+++..++.+...|.+. |+.+..+||+++.++|..++++|++| +.+ +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 46777777777654 5678999999999999999999885 99999999999999999999999998 677 7899999
Q ss_pred ccccccCCCccEEEEeCCCCCHHHHHHHhcccCCCCCCceEEEE
Q 010563 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (507)
Q Consensus 318 ~~~GiD~p~v~~VI~~~~p~s~~~y~Q~~GRagR~g~~~~~i~~ 361 (507)
+++|+|++.+++||+||+|+++..|.|++||++|.|+.+.+.+|
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 99999999999999999999999999999999999987765443
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.75 E-value=3e-18 Score=166.84 Aligned_cols=145 Identities=17% Similarity=0.109 Sum_probs=107.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----CCCeEEEecChHHHHHHHHHHHHHcCC----ceEEec
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGI----AGEFLS 109 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~~~~~lvi~P~~~L~~q~~~~l~~~gi----~~~~~~ 109 (507)
.++++|.++++.++.+++.++.+|||+|||+++++++.. ..+++||++|+++|+.|+.+.+++++. ....+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 699999999999999888999999999999999877653 345999999999999999999999754 334444
Q ss_pred CCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 010563 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (507)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~ 189 (507)
++..... ......+++++||+.+..... .....+++||+||||++.. ..+..+..
T Consensus 193 ~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~-------~~~~~~~~vIiDEaH~~~~---------~~~~~il~ 247 (282)
T 1rif_A 193 GGASKDD---------KYKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (282)
T ss_dssp TTCSSTT---------CCCTTCSEEEECHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHTT
T ss_pred CCCcchh---------hhccCCcEEEEchHHHHhhHH-------HHHhhCCEEEEECCccCCc---------ccHHHHHH
Confidence 4332111 111347899999986654321 1223479999999999874 24444555
Q ss_pred hC-CCCCEEEEeecCChhh
Q 010563 190 YL-PDVPILALTATAAPKV 207 (507)
Q Consensus 190 ~~-~~~~~i~lSAT~~~~~ 207 (507)
.+ +..++++||||++...
T Consensus 248 ~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TCTTCCEEEEECSSCCTTS
T ss_pred HhhcCCeEEEEeCCCCCcc
Confidence 55 5788999999997653
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.75 E-value=5.1e-17 Score=174.43 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=103.4
Q ss_pred CEEEEeecCChhhHHHHHHHhCCCCCeEEe--ccCCCCceEEEEEee------cchhh----HHHHHHHHHHhcCCccEE
Q 010563 195 PILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYK------DLLDD----AYADLCSVLKANGDTCAI 262 (507)
Q Consensus 195 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~--~~~~~~ni~~~v~~~------~~~~~----~~~~l~~~l~~~~~~~~I 262 (507)
.+|++|||+++ ...+...+|+. ...+. ++++..+....+... +..+. ..+.|.++++..+ +.++
T Consensus 377 ~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~-g~~l 452 (620)
T 4a15_A 377 KTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVK-KNTI 452 (620)
T ss_dssp EEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHC-SCEE
T ss_pred eEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 45899999997 56778889986 43332 345555544333211 11111 2233444444444 4699
Q ss_pred EEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC--cccccccCCC--ccEEEEeCCCCC
Q 010563 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKD--VRLVCHFNIPKS 338 (507)
Q Consensus 263 Vf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~--a~~~GiD~p~--v~~VI~~~~p~s 338 (507)
||++|....+.+++.|+. +... ...+++..+|..++++|+ ++-.||++|. .|++|||+|+ .+.||..++|..
T Consensus 453 vlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp EEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCC
T ss_pred EEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCC
Confidence 999999999999998862 2222 555666778999999999 8888999985 9999999987 679999998842
Q ss_pred -------------------H----------HHHHHHhcccCCCCCCceEEEEecc
Q 010563 339 -------------------M----------EAFYQESGRAGRDQLPSKSLLYYGM 364 (507)
Q Consensus 339 -------------------~----------~~y~Q~~GRagR~g~~~~~i~~~~~ 364 (507)
. ....|-+||+-|....--++++.+.
T Consensus 529 ~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 529 RPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1 1226999999998765556666654
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.66 E-value=5e-16 Score=146.91 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=103.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhc----C----CCeEEEecChHHHHHHHHHHHHH-cCCc----
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----K----PGIVLVVSPLIALMENQVIGLKE-KGIA---- 104 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~----~----~~~~lvi~P~~~L~~q~~~~l~~-~gi~---- 104 (507)
.++++|.++++.+..|+++++.||||+|||+++.++++. . ...++++.|+++|+.|..+.+.. ++..
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 478999999999999999999999999999888777653 1 23899999999999999888875 3221
Q ss_pred eEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc-cccCCCCHHHHHH
Q 010563 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-SSWGHDFRPSYRK 183 (507)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i-~~~g~~fr~~~~~ 183 (507)
...-.. ..-.......+++++||+.+.. .+.. ....+++||+||||.+ .+.+ |. ...
T Consensus 141 ~g~~~~-----------~~~~~~~~~~~Ivv~Tpg~l~~-----~l~~--~l~~~~~lVlDEah~~~~~~~--~~--~~~ 198 (235)
T 3llm_A 141 CGYSVR-----------FESILPRPHASIMFCTVGVLLR-----KLEA--GIRGISHVIVDEIHERDINTD--FL--LVV 198 (235)
T ss_dssp EEEEET-----------TEEECCCSSSEEEEEEHHHHHH-----HHHH--CCTTCCEEEECCTTSCCHHHH--HH--HHH
T ss_pred EEEeec-----------hhhccCCCCCeEEEECHHHHHH-----HHHh--hhcCCcEEEEECCccCCcchH--HH--HHH
Confidence 111000 0001111346677777754422 2222 3667999999999984 2222 11 135
Q ss_pred HHHHHHhCCCCCEEEEeecCChhh
Q 010563 184 LSSLRNYLPDVPILALTATAAPKV 207 (507)
Q Consensus 184 l~~l~~~~~~~~~i~lSAT~~~~~ 207 (507)
+..+....++.+++++|||++...
T Consensus 199 l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 199 LRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHCTTSEEEEEECSSCCHH
T ss_pred HHHHHhhCCCCeEEEEecCCCHHH
Confidence 666777778999999999999876
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.40 E-value=1.9e-06 Score=92.17 Aligned_cols=77 Identities=18% Similarity=0.087 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHH--HHHHHHHhc-----CCCeEEEecChHHHHHHHH
Q 010563 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS--MCYQIPALA-----KPGIVLVVSPLIALMENQV 95 (507)
Q Consensus 23 ~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKT--l~~~lp~l~-----~~~~~lvi~P~~~L~~q~~ 95 (507)
...+...|.+.|+-..-.+.|++++..++.++.+++.+|+|+||| +.++++.+. .+.++++++||..++.+..
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 134 EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp HHHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHH
Confidence 456777888776533337899999999999999999999999999 667777775 2348999999999988766
Q ss_pred HHHH
Q 010563 96 IGLK 99 (507)
Q Consensus 96 ~~l~ 99 (507)
+.+.
T Consensus 214 e~~~ 217 (608)
T 1w36_D 214 ESLG 217 (608)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6554
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.11 E-value=9.8e-06 Score=87.50 Aligned_cols=73 Identities=23% Similarity=0.167 Sum_probs=58.4
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEcCCCchHHHHHH--H-HHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEec
Q 010563 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ--I-PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d-~lv~apTG~GKTl~~~--l-p~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~ 109 (507)
..|.+.|.+|+..++..++ .+++||+|+|||.+.. + -.+.++.++||++||..-+.+.+++|...+.+..-+.
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 3578999999999988776 6899999999995432 2 2345678999999999999999999988877665443
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.03 E-value=4.5e-05 Score=81.92 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=57.7
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc--CCCeEEEecChHHHHHHHHHHHHHcCCceEE
Q 010563 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (507)
Q Consensus 36 ~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~--lp~l~--~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~ 107 (507)
+..+++.|.+|+..++.+.-+++.||+|+|||.+.. +..+. .+.++++++|+...+.+..+.+.+.|++..-
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R 253 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 253 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEe
Confidence 346889999999999987778999999999996532 33333 4678999999999999999999887766443
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=7.4e-05 Score=82.21 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=57.1
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc--CCCeEEEecChHHHHHHHHHHHHHcCCceE
Q 010563 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (507)
Q Consensus 36 ~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~--lp~l~--~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~ 106 (507)
+..+++.|.+|+..++.+.-+++.||+|+|||.+.. +..+. .+.+++|++|+...+.+..+++.+.|++..
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~il 432 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVV 432 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEE
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEE
Confidence 346789999999999887778999999999996532 22222 467999999999999999999998876543
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.83 E-value=0.0001 Score=80.92 Aligned_cols=72 Identities=24% Similarity=0.298 Sum_probs=57.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHHhc--CCCeEEEecChHHHHHHHHHHHHHcCCceEEe
Q 010563 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~--lp~l~--~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~ 108 (507)
..+.+.|.+|+..++.+.-.++.||+|+|||.+.. +..+. .+.++++++||..-+.+..+.+...|++..-+
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRl 430 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRL 430 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEEC
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEee
Confidence 45789999999999988778999999999996532 33333 46789999999999999999998887764433
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.65 E-value=0.00029 Score=72.72 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=46.0
Q ss_pred cCCCCCcHHHHHHHHHHHcC----C-CEEEEcCCCchHHHHHH--HHHhc-CCC-eEEEecChHHHHHHHHH
Q 010563 34 FGHAQFRDKQLDAIQAVLSG----R-DCFCLMPTGGGKSMCYQ--IPALA-KPG-IVLVVSPLIALMENQVI 96 (507)
Q Consensus 34 fg~~~~r~~Q~~~i~~i~~g----~-d~lv~apTG~GKTl~~~--lp~l~-~~~-~~lvi~P~~~L~~q~~~ 96 (507)
+.+..|++.|++++..++.. + .+++.||.|+|||.... +..+. .+. .+++++||...+....+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHh
Confidence 57889999999999987542 3 78999999999995432 22232 333 68999999877655443
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.50 E-value=0.00059 Score=72.21 Aligned_cols=59 Identities=14% Similarity=-0.015 Sum_probs=46.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH--HHHHh-cCCCeEEEecChHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALMENQVI 96 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~--~lp~l-~~~~~~lvi~P~~~L~~q~~~ 96 (507)
.+.+.|.+++..++.++.+++.+|+|+|||.+. ++-.+ ..+..+++++||...+....+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHh
Confidence 478999999999999889999999999999543 22222 356789999999887765433
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.29 E-value=0.036 Score=59.42 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHH--H-HhcC----CCeEEEecChHHHHHHHHHHHHHc
Q 010563 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--P-ALAK----PGIVLVVSPLIALMENQVIGLKEK 101 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~l--p-~l~~----~~~~lvi~P~~~L~~q~~~~l~~~ 101 (507)
..+++.|.+|+.. .+..++|.|+.|||||.+..- . .+.. +..++++++|...+.+..+++.+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4689999999973 356799999999999965432 2 2222 357999999999999988888763
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.23 E-value=0.0036 Score=60.48 Aligned_cols=126 Identities=10% Similarity=0.037 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccccc
Q 010563 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (507)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~~G 321 (507)
.|+..|..++.. ..+.+++||++..+..+-+..+|...|+....+.|.....+ .+ -.++...+.+.|.+.+-|
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k----~~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA----ANDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCT
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh----cccCCceEEEEECCCCCC
Confidence 455555555543 24578999999999999999999999999999999854432 11 124566666668888888
Q ss_pred cc-----CCCccEEEEeCCCCCHHHH-HHHhcccCCCC----CCceEEEEeccchHHHHHHHH
Q 010563 322 ID-----RKDVRLVCHFNIPKSMEAF-YQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFIL 374 (507)
Q Consensus 322 iD-----~p~v~~VI~~~~p~s~~~y-~Q~~GRagR~g----~~~~~i~~~~~~d~~~~~~~~ 374 (507)
+| ....+.||.||..+++..= +|.+-|+.|.| ++-..+-+....-.+.....+
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 86 5778999999999999875 99999998873 244566667666666554444
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.87 E-value=0.017 Score=50.95 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=22.2
Q ss_pred HHHHHHHHHHH---------cCCCEEEEcCCCchHHHHH
Q 010563 41 DKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 41 ~~Q~~~i~~i~---------~g~d~lv~apTG~GKTl~~ 70 (507)
+.|.+++..+. .|+.+++.+|+|+|||...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 45666665543 3678999999999999654
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.61 E-value=0.0044 Score=62.71 Aligned_cols=44 Identities=14% Similarity=-0.080 Sum_probs=33.9
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHc
Q 010563 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~ 101 (507)
.++.|+.|+|||...+- +......+|++|+++++.++.+.+.+.
T Consensus 164 ~~I~G~aGsGKTt~I~~--~~~~~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILS--RVNFEEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEECTTSCHHHHHHH--HCCTTTCEEEESCHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHH--HhccCCeEEEeCCHHHHHHHHHHhhhc
Confidence 57899999999975432 223367799999999999888877543
No 105
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.044 Score=53.12 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~ 70 (507)
+.++++.||+|+|||++.
T Consensus 45 ~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCEEEEECCCSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999765
No 106
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.24 E-value=0.051 Score=54.11 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH----hcC-CCeEEEecChHHHHHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAK-PGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~----l~~-~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
.+.|+|...+..+...+-+++..+-+.|||......+ +.. +..+++++|+..-+....+.++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 5899999999887655668899999999996544332 233 45799999999888776665554
No 107
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.98 E-value=0.068 Score=48.00 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999653
No 108
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.90 E-value=0.098 Score=50.16 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
..+++.+|+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36999999999999765
No 109
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.81 E-value=0.083 Score=52.32 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
+.+++.+|+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45999999999999654
No 110
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.51 E-value=0.027 Score=55.13 Aligned_cols=149 Identities=21% Similarity=0.162 Sum_probs=73.1
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHHHH---HhcCCCeEEEecC---hHHHHHHHHHHHHHcCCceEEe-cCCCCH
Q 010563 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFL-SSTQTM 114 (507)
Q Consensus 46 ~i~~i~~g----~d~lv~apTG~GKTl~~~lp---~l~~~~~~lvi~P---~~~L~~q~~~~l~~~gi~~~~~-~~~~~~ 114 (507)
.++.++.| .=+++.|++|+|||...+-- +...+..+++++. ...|+....... .++....+ ....+.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~--~~v~~~~l~~g~Ls~ 112 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDL--TSINMHDLESGRLDD 112 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHH--HCCCHHHHHHTCCCH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHh--hCCCHHHHhcCCCCH
Confidence 45555543 44788889999999543322 2235677888863 334433322221 12221111 112233
Q ss_pred HHHHHHHH---HhhcCCCcccEEE-ECcccccChhhHHHHHhhhccC-CccEEEEeccccccccC------CCCHHHHHH
Q 010563 115 QVKTKIYE---DLDSGKPSLRLLY-VTPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCISSWG------HDFRPSYRK 183 (507)
Q Consensus 115 ~~~~~~~~---~~~~~~~~~~il~-~tpe~~~t~~~~~~l~~~~~~~-~l~~iViDEaH~i~~~g------~~fr~~~~~ 183 (507)
.+...+.. .+.. ..+++ -+|. +........+.++.... .+++||||-.+.+..-+ ...+...+.
T Consensus 113 ~e~~~l~~a~~~l~~----~~l~I~d~~~-~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~ 187 (338)
T 4a1f_A 113 DQWENLAKCFDHLSQ----KKLFFYDKSY-VRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRE 187 (338)
T ss_dssp HHHHHHHHHHHHHHH----SCEEEECCTT-CCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CCeEEeCCCC-CcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHH
Confidence 33322221 1221 22333 2332 11122333444444343 69999999999885421 122333444
Q ss_pred HHHHHHhCCCCCEEEEeec
Q 010563 184 LSSLRNYLPDVPILALTAT 202 (507)
Q Consensus 184 l~~l~~~~~~~~~i~lSAT 202 (507)
|..+...+ ++|++++|-.
T Consensus 188 LK~lAkel-~vpVi~lsQl 205 (338)
T 4a1f_A 188 LKTLAREL-EIPIIALVQL 205 (338)
T ss_dssp HHHHHHHH-TSCEEEEEEC
T ss_pred HHHHHHHc-CCeEEEEEec
Confidence 55554443 7889988775
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.47 E-value=0.0086 Score=55.04 Aligned_cols=36 Identities=25% Similarity=0.070 Sum_probs=24.2
Q ss_pred CCCEEEEcCCCchHHHHHHHHH---hcCCCeEEEecChH
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~~ 88 (507)
|.-.++.+|+|+|||...+-.+ ..++.+++++.|..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 4456788999999996543222 23456788887664
No 112
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.35 E-value=0.044 Score=56.10 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=69.7
Q ss_pred HHHHHHc----CCCEEEEcCCCchHHHHHH-HHH--hc-CCCeEEEecChHHHHHHHHHHHH--HcCCceEEecC-CCCH
Q 010563 46 AIQAVLS----GRDCFCLMPTGGGKSMCYQ-IPA--LA-KPGIVLVVSPLIALMENQVIGLK--EKGIAGEFLSS-TQTM 114 (507)
Q Consensus 46 ~i~~i~~----g~d~lv~apTG~GKTl~~~-lp~--l~-~~~~~lvi~P~~~L~~q~~~~l~--~~gi~~~~~~~-~~~~ 114 (507)
.++.++. |.-+++.|++|+|||...+ +.. .. .+..+++++.-..- .+...++. ..|+....+.. ....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~~l~~g~l~~ 270 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLCAEGNINAQNLRTGKLTP 270 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 4555553 3457888999999995433 222 12 34478887633221 23333322 23333211111 1222
Q ss_pred HHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCC---CC----HHHHHHHHHH
Q 010563 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH---DF----RPSYRKLSSL 187 (507)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~---~f----r~~~~~l~~l 187 (507)
.....+...+..-. ...+.+..+..+........+........+++||||+.+.+...+. .- +.....|..+
T Consensus 271 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~l 349 (454)
T 2r6a_A 271 EDWGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKAL 349 (454)
T ss_dssp HHHHHHHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 22222221111100 1234443332222223333444444344689999999999874321 11 1112223333
Q ss_pred HHhCCCCCEEEEee
Q 010563 188 RNYLPDVPILALTA 201 (507)
Q Consensus 188 ~~~~~~~~~i~lSA 201 (507)
...+ ++++++++-
T Consensus 350 Ake~-~i~vi~~sq 362 (454)
T 2r6a_A 350 AREL-EVPVIALSQ 362 (454)
T ss_dssp HHHH-TCCEEEEEC
T ss_pred HHHh-CCeEEEEec
Confidence 3222 778888775
No 113
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.35 E-value=0.045 Score=53.53 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=24.5
Q ss_pred CcHHHHHHHHHHH----cCC---CEEEEcCCCchHHHHHH
Q 010563 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 39 ~r~~Q~~~i~~i~----~g~---d~lv~apTG~GKTl~~~ 71 (507)
+.|+|.+++..+. +|+ -+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688888876654 343 38999999999996554
No 114
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.33 E-value=0.027 Score=57.52 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=71.2
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-HH--Hhc-CCCeEEEecChHHHHHHHHHHHH--HcCCceEEec-CCCCH
Q 010563 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP--ALA-KPGIVLVVSPLIALMENQVIGLK--EKGIAGEFLS-STQTM 114 (507)
Q Consensus 46 ~i~~i~~g----~d~lv~apTG~GKTl~~~-lp--~l~-~~~~~lvi~P~~~L~~q~~~~l~--~~gi~~~~~~-~~~~~ 114 (507)
.++.++.| .-+++.|++|+|||...+ +. +.. .+..+++++.--. ..+...++. ..|+....+. .....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~~g~l~~ 267 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVRLGQLTD 267 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCCGGGCCH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhCCCCCH
Confidence 35555543 347888999999994432 22 122 3457788764321 122333322 2343322121 22233
Q ss_pred HHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccccc--CC--CCH-----HHHHHHH
Q 010563 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW--GH--DFR-----PSYRKLS 185 (507)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~--g~--~fr-----~~~~~l~ 185 (507)
.....+......-. ...+.+..+..+........+.+......+++||||..+.+..- +. .-| ...+.|.
T Consensus 268 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk 346 (444)
T 2q6t_A 268 RDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLK 346 (444)
T ss_dssp HHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHH
Confidence 33332222211100 12344332222222333444444443446999999999998643 21 112 1122333
Q ss_pred HHHHhCCCCCEEEEeec
Q 010563 186 SLRNYLPDVPILALTAT 202 (507)
Q Consensus 186 ~l~~~~~~~~~i~lSAT 202 (507)
.+...+ ++|+++++-.
T Consensus 347 ~lAke~-~v~vi~lsql 362 (444)
T 2q6t_A 347 ALAREL-GIPIIALSQL 362 (444)
T ss_dssp HHHHHH-TSCEEEEEEC
T ss_pred HHHHHh-CCeEEEEecC
Confidence 333332 7888888754
No 115
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.29 E-value=0.056 Score=54.04 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEec
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~ 85 (507)
.+.+++.+|+|+|||......+-..+...+.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 367999999999999766544433334444333
No 116
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.26 E-value=0.13 Score=50.79 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.1
Q ss_pred CEEEEcCCCchHHHHH
Q 010563 55 DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv~apTG~GKTl~~ 70 (507)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6899999999999654
No 117
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.19 E-value=0.42 Score=41.37 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~ 70 (507)
...+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 356899999999999654
No 118
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.18 E-value=0.027 Score=53.49 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=32.2
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHHHH
Q 010563 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 14 ~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i--~~g~d~lv~apTG~GKTl~~~lp 73 (507)
...|+++.-.+...+.|.+..... -...+.+... ..++.+++.+|+|+|||.....-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELP---LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHH---HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHH---hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHH
Confidence 445666666666666666542211 0111222222 23467999999999999765433
No 119
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.16 E-value=0.074 Score=51.64 Aligned_cols=60 Identities=13% Similarity=-0.005 Sum_probs=33.2
Q ss_pred cccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHH-HHcCCCEEEEcCCCchHHHHHHHH
Q 010563 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 11 ~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~-i~~g~d~lv~apTG~GKTl~~~lp 73 (507)
..+...|+++.-.+...+.|++...+...+|. .+.. ....+.+++.+|+|+|||......
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPH---LFKGNRKPTSGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGG---GCCTTCCCCCEEEEECSSSSCHHHHHHHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHH---HHhcCCCCCCeEEEECCCCCcHHHHHHHH
Confidence 34456677777777777777664311000000 0000 001246999999999999765433
No 120
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.13 E-value=0.094 Score=44.21 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=16.6
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 010563 51 LSGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 51 ~~g~d~lv~apTG~GKTl~~ 70 (507)
..+..+++.+|+|+|||...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34578999999999999754
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.12 E-value=0.056 Score=46.11 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~ 70 (507)
.|+.+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999643
No 122
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.07 E-value=0.066 Score=51.91 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=23.7
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (507)
...+++|||+|.+.. ......|..+....+....+.++++...
T Consensus 105 ~~~vliiDEi~~l~~-----~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL-----AESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGG-----HHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCc-----HHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 468999999999861 1122344444444333334444555444
No 123
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.07 E-value=0.18 Score=53.43 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHH----hcCC-CeEEEecChHHHHHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKP-GIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~----l~~~-~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
.+.|+|...+..+-..+-+++..|-|.|||.+....+ +..+ ..+++++|+...+.+..+.++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 4789999999887556778999999999996544222 2333 4899999999998887766665
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.05 E-value=0.12 Score=50.97 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~ 70 (507)
+..+++.||+|+|||...
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999654
No 125
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.00 E-value=0.096 Score=50.39 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=13.9
Q ss_pred CEEEEcCCCchHHHHH
Q 010563 55 DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv~apTG~GKTl~~ 70 (507)
.+++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999654
No 126
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.89 E-value=0.078 Score=46.97 Aligned_cols=37 Identities=24% Similarity=0.135 Sum_probs=25.5
Q ss_pred cCCCEEEEcCCCchHHHHHH-HH--HhcCCCeEEEecChH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLI 88 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~-lp--~l~~~~~~lvi~P~~ 88 (507)
.|+-.++.+|.|+|||...+ +. ....+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 35557889999999997653 22 123566788888884
No 127
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.88 E-value=0.51 Score=40.90 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.6
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
..+++.+|+|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 56999999999999654
No 128
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.84 E-value=0.067 Score=51.90 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
..+++.||+|+|||....
T Consensus 38 ~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SSEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999996543
No 129
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.81 E-value=0.049 Score=57.93 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=40.1
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHH
Q 010563 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g--~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~ 91 (507)
.++.-|.+++..++.- .-.++.|+-|.|||.+.-+.+-.-.+.++|.+|+.+=+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~ 230 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKAST 230 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHH
Confidence 5788999999998863 34688999999999655444333345579999997644
No 130
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.81 E-value=0.26 Score=45.75 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
.+.+++.+|+|+|||....
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568999999999997654
No 131
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.73 E-value=0.39 Score=46.38 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=69.9
Q ss_pred HHHHHHc----CCCEEEEcCCCchHHHHH-HHH--HhcCCCeEEEecChHHHHHHHHHHHHH--cCCceEEecCCC----
Q 010563 46 AIQAVLS----GRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSSTQ---- 112 (507)
Q Consensus 46 ~i~~i~~----g~d~lv~apTG~GKTl~~-~lp--~l~~~~~~lvi~P~~~L~~q~~~~l~~--~gi~~~~~~~~~---- 112 (507)
.++.++. |.-+++.|++|+|||... ++. +...+..+++++.-.. ..+...++.. .|+....+..+.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s-~~~l~~R~~~~~~~i~~~~l~~~~~~l~ 135 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFA 135 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC-HHHHHHHHHHHHTTCCHHHHHSCHHHHC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcCCCCCC
Confidence 4555553 345788999999999433 332 2334567888873311 1233333332 233221111110
Q ss_pred --CHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCcc--EEEEeccccccccCC-CCH-----HHHH
Q 010563 113 --TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISSWGH-DFR-----PSYR 182 (507)
Q Consensus 113 --~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~--~iViDEaH~i~~~g~-~fr-----~~~~ 182 (507)
...........+.. ..+++..+..+........+.+......++ +||||-.+.+..-+. .-| ....
T Consensus 136 ~~~~~~l~~a~~~l~~----~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~ 211 (315)
T 3bh0_A 136 SEDWGKLSMAIGEISN----SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISR 211 (315)
T ss_dssp SSCHHHHHHHHHHHHT----SCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC----CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHH
Confidence 01111111112211 234433322233333444444444444588 999999998864221 112 1122
Q ss_pred HHHHHHHhCCCCCEEEEeec
Q 010563 183 KLSSLRNYLPDVPILALTAT 202 (507)
Q Consensus 183 ~l~~l~~~~~~~~~i~lSAT 202 (507)
.|..+...+ ++++++++-.
T Consensus 212 ~Lk~lAk~~-~i~vi~lsql 230 (315)
T 3bh0_A 212 DLKKMAREL-DVVVIALSQL 230 (315)
T ss_dssp HHHHHHHHH-TCEEEEEECC
T ss_pred HHHHHHHHh-CCeEEEEeec
Confidence 333333332 6777777653
No 132
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.68 E-value=0.067 Score=58.46 Aligned_cols=76 Identities=12% Similarity=0.022 Sum_probs=65.2
Q ss_pred CccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc-ccccccCCCccEEEE
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVCH 332 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GiD~p~v~~VI~ 332 (507)
+.+++|.++|+.-+.+.++.+++. |+++..+||+++..+|...++.+.+|+.+|+|+|.. +...++..++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 457999999999888888777653 789999999999999999999999999999999976 445678888888884
Q ss_pred e
Q 010563 333 F 333 (507)
Q Consensus 333 ~ 333 (507)
=
T Consensus 497 D 497 (780)
T 1gm5_A 497 D 497 (780)
T ss_dssp E
T ss_pred c
Confidence 3
No 133
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.57 E-value=0.075 Score=50.10 Aligned_cols=19 Identities=16% Similarity=0.072 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
..+++.+|+|+|||.....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3689999999999976543
No 134
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.54 E-value=0.046 Score=50.09 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~ 70 (507)
++.+++.||+|+|||...
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999654
No 135
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.54 E-value=0.057 Score=55.11 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.2
Q ss_pred CEEEEcCCCchHHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~ 74 (507)
.+++.+|+|+|||.....-+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58999999999997665443
No 136
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.52 E-value=0.23 Score=48.16 Aligned_cols=56 Identities=16% Similarity=-0.021 Sum_probs=30.7
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHH
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHA--QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~--~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~l 72 (507)
+...|+++.-.+...+.|++...+. .+..++ ......+.+++.+|+|+|||+....
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC----TTCCCCSEEEEESSSSSCHHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh----CCCCCCceEEEECCCCccHHHHHHH
Confidence 3456777766666666666532110 000000 0001125699999999999976543
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.44 E-value=0.27 Score=47.15 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=34.8
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHHHH-HHHHHH--HcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEE
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQL-DAIQAV--LSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~-~~i~~i--~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lv 83 (507)
+...|+++.-.+...+.|++...+ |... +.+... ..++.+++.+|+|+|||+....-+-......+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~----~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~ 79 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQY----PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 79 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHH----HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH----HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEE
Confidence 344566666566666666553211 1000 111111 234679999999999997654433333333333
No 138
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.42 E-value=0.09 Score=50.67 Aligned_cols=44 Identities=7% Similarity=0.071 Sum_probs=27.2
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (507)
+..+++||||||.+.. .....|....+..|..-++++.++-+..
T Consensus 81 ~~~kvviIdead~lt~------~a~naLLk~LEep~~~t~fIl~t~~~~k 124 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQ------QAANAFLKALEEPPEYAVIVLNTRRWHY 124 (305)
T ss_dssp SSSEEEEETTGGGBCH------HHHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEeccHHHhCH------HHHHHHHHHHhCCCCCeEEEEEECChHh
Confidence 4468999999999864 2234555566665554455555554433
No 139
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.42 E-value=0.093 Score=54.61 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=27.6
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~ 204 (507)
.-.+|+|||+|.+.... +.....|..+... .+.++++.+++..
T Consensus 148 ~~~vliIDEid~l~~~~---~~~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGD---RGGVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTS---TTHHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhh---HHHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 35789999999987532 2223344444444 4678888887754
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.36 E-value=0.39 Score=43.96 Aligned_cols=51 Identities=14% Similarity=-0.017 Sum_probs=30.5
Q ss_pred cCCCEEEEcCCCchHHHHH-HHH--HhcCCCeEEEecChHHHHHHHHHHHHHcCC
Q 010563 52 SGRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~-~lp--~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi 103 (507)
.|.-+++.+|+|+|||... ++. ....++.+++++-... ..+..+.+...|.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCC
Confidence 3566889999999999653 332 2235667777764322 2344445555543
No 141
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.22 E-value=0.029 Score=50.50 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.4
Q ss_pred EEEEcCCCchHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~ 71 (507)
.++.|++|+|||+...
T Consensus 8 ~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 5799999999997543
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.20 E-value=0.17 Score=49.82 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~ 70 (507)
++.+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999654
No 143
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.16 E-value=0.044 Score=48.99 Aligned_cols=36 Identities=22% Similarity=0.073 Sum_probs=24.7
Q ss_pred CCCEEEEcCCCchHHHHHHHHHh---cCCCeEEEecChH
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~l---~~~~~~lvi~P~~ 88 (507)
|+=.++.+|+|+|||...+--+. .++.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 44467899999999966543322 3567888888874
No 144
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.14 E-value=0.35 Score=47.75 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=62.1
Q ss_pred CCCCcccccccccccCCCCCChHHHHHHHHHHhcCCCCCcH-------------HHHHHHHHHHc-C-----CCEEEEcC
Q 010563 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRD-------------KQLDAIQAVLS-G-----RDCFCLMP 61 (507)
Q Consensus 1 ~~~~~~p~~~~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~-------------~Q~~~i~~i~~-g-----~d~lv~ap 61 (507)
|+|...+-.....+.... ....+.+...+.+.||...+.. .=...++.++. | .-+++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~ 82 (366)
T 1xp8_A 4 MSKDATKEISAPTDAKER-SKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGP 82 (366)
T ss_dssp --------------CCHH-HHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEES
T ss_pred cccccccccCCCCCHHHH-HHHHHHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCccCCcEEEEEcC
Confidence 555555544444333211 1122334445555677643211 11345677776 2 45788999
Q ss_pred CCchHHHHHH-HHH--hcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 62 TGGGKSMCYQ-IPA--LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 62 TG~GKTl~~~-lp~--l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
+|+|||...+ +.+ ...++.++++..-..+- +. .+..+|+.. -++++..|
T Consensus 83 pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-~~--~a~~~g~d~-------------------------~~l~i~~~ 134 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-PV--YARALGVNT-------------------------DELLVSQP 134 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-HH--HHHHTTCCG-------------------------GGCEEECC
T ss_pred CCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-HH--HHHHcCCCH-------------------------HHceeecC
Confidence 9999995432 221 23456677776433221 11 122333321 12333333
Q ss_pred ccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 139 e~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
..+ ...+..+........+++||||....+.
T Consensus 135 ~~~--e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 135 DNG--EQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp SSH--HHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred CcH--HHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 211 1223333333334568999999999886
No 145
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.11 E-value=0.2 Score=51.04 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=16.6
Q ss_pred CCEEEEcCCCchHHHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~ 74 (507)
+.+++.+|+|+|||+.....+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia 188 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVA 188 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 569999999999997654433
No 146
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.04 E-value=0.34 Score=46.09 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
++.+++.||+|+|||.....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 46799999999999976543
No 147
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.02 E-value=0.077 Score=48.08 Aligned_cols=34 Identities=18% Similarity=-0.036 Sum_probs=23.4
Q ss_pred EEEEcCCCchHHHHHHHHH---hcCCCeEEEecChHH
Q 010563 56 CFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~~~ 89 (507)
.++.+|.|+|||...+--+ ...+.+++++.|.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 4678899999996654332 245778888888764
No 148
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.01 E-value=0.26 Score=43.91 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
+.+++.+|+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999654
No 149
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.99 E-value=0.53 Score=47.80 Aligned_cols=151 Identities=14% Similarity=0.116 Sum_probs=71.3
Q ss_pred HHHHHHcC----CCEEEEcCCCchHHHHHH-H--HHhcCCCeEEEecChHHHHHHHHHHHHH--cCCceEEecCCC----
Q 010563 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSSTQ---- 112 (507)
Q Consensus 46 ~i~~i~~g----~d~lv~apTG~GKTl~~~-l--p~l~~~~~~lvi~P~~~L~~q~~~~l~~--~gi~~~~~~~~~---- 112 (507)
.++.++.| .-+++.|++|+|||...+ + -+...+..+++++---. ..|.+.++.. .|+....+..+.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms-~~ql~~R~~~~~~~i~~~~l~~g~~~l~ 264 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFA 264 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC-TTHHHHHHHHHHSCCCHHHHHHTGGGTC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcccCCCC
Confidence 35555543 447888999999995433 2 22234667888874321 1223333322 233221111110
Q ss_pred --CHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCcc--EEEEeccccccccC-CCCHH-H----HH
Q 010563 113 --TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISSWG-HDFRP-S----YR 182 (507)
Q Consensus 113 --~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~--~iViDEaH~i~~~g-~~fr~-~----~~ 182 (507)
...........+.. ..+.+..+.-+........+.+......++ +||||=.+.+..-+ ..-|. . .+
T Consensus 265 ~~~~~~l~~a~~~l~~----~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~ 340 (444)
T 3bgw_A 265 SEDWGKLSMAIGEISN----SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISR 340 (444)
T ss_dssp CSCHHHHHHHHHHHHT----SCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHH
Confidence 11111111222221 234433222233333444444444444689 99999999886432 11222 1 22
Q ss_pred HHHHHHHhCCCCCEEEEeec
Q 010563 183 KLSSLRNYLPDVPILALTAT 202 (507)
Q Consensus 183 ~l~~l~~~~~~~~~i~lSAT 202 (507)
.|..+...+ ++|++++|-.
T Consensus 341 ~Lk~lAke~-~v~vi~lsql 359 (444)
T 3bgw_A 341 DLKKMAREL-DVVVIALSQL 359 (444)
T ss_dssp HHHHHHHHH-TCEEEEEEEC
T ss_pred HHHHHHHHh-CCeEEEEecC
Confidence 333333332 7888888764
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.98 E-value=0.78 Score=41.33 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.6
Q ss_pred CEEEEcCCCchHHHHH
Q 010563 55 DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv~apTG~GKTl~~ 70 (507)
.+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999653
No 151
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.96 E-value=0.16 Score=50.13 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
+.+++.+|+|+|||+....
T Consensus 85 ~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCEEEECSTTSCHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 4699999999999976543
No 152
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.84 E-value=0.079 Score=51.17 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~ 70 (507)
++.+++.||+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999644
No 153
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.78 E-value=0.61 Score=45.33 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
..+++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999654
No 154
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.23 Score=49.56 Aligned_cols=58 Identities=9% Similarity=0.067 Sum_probs=35.2
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHH
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~--~g~d~lv~apTG~GKTl~~~lp 73 (507)
+...|++++-.++..+.|++..-+.-.+| +.+..+- -.+.+|+.+|+|+|||+..-.-
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~p---e~f~~~gi~~prGvLL~GPPGTGKTllAkAi 202 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHP---ELFESLGIAQPKGVILYGPPGTGKTLLARAV 202 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCH---HHHHHHTCCCCCCEEEESCSSSSHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCceEEeCCCCCCHHHHHHHH
Confidence 45678887777777777776432211111 1122211 1367999999999999765433
No 155
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.55 E-value=0.058 Score=58.20 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=47.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHH--H-Hhc----CCCeEEEecChHHHHHHHHHHHHH
Q 010563 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--P-ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 38 ~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~l--p-~l~----~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
.|++.|.+++.. .+..++|.|+.|||||.+..- . .+. .+..+++|+.|+..+.+..+++..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 478999999975 356789999999999965432 1 121 346899999999999998888876
No 156
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.43 E-value=0.57 Score=43.42 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
+.+++.+|+|+|||....
T Consensus 46 ~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 468999999999997654
No 157
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.34 E-value=0.89 Score=40.97 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=21.8
Q ss_pred cCCCEEEEcCCCchHHHHH-HHHHh--cCCCeEEEec
Q 010563 52 SGRDCFCLMPTGGGKSMCY-QIPAL--AKPGIVLVVS 85 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~-~lp~l--~~~~~~lvi~ 85 (507)
.|.-+++.+|+|+|||... ++... ...+.++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3566789999999999443 33322 2355666665
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.34 E-value=0.77 Score=43.94 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=25.1
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (507)
.-.++||||+|.+.. .....|..+....+....+.++++.+..
T Consensus 110 ~~~vliiDe~~~l~~------~~~~~L~~~le~~~~~~~~i~~~~~~~~ 152 (327)
T 1iqp_A 110 SFKIIFLDEADALTQ------DAQQALRRTMEMFSSNVRFILSCNYSSK 152 (327)
T ss_dssp SCEEEEEETGGGSCH------HHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CCeEEEEeCCCcCCH------HHHHHHHHHHHhcCCCCeEEEEeCCccc
Confidence 467999999999854 2234455555554443344455554443
No 159
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.29 E-value=0.67 Score=46.10 Aligned_cols=16 Identities=19% Similarity=0.195 Sum_probs=13.0
Q ss_pred CEEE--EcCCCchHHHHH
Q 010563 55 DCFC--LMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv--~apTG~GKTl~~ 70 (507)
.+++ .+|+|+|||...
T Consensus 52 ~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEECTTCCSSSHHHHH
T ss_pred EEEEeCcCcCCCCHHHHH
Confidence 4677 799999999654
No 160
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.23 E-value=0.12 Score=56.15 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHH--HHH-hc----CCCeEEEecChHHHHHHHHHHHHH
Q 010563 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~--lp~-l~----~~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
..+++.|.+|+.. .+..++|.|+.|||||.+.. +.- +. .+..+++|+.|+..+.+..+++..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4589999999976 35689999999999996543 222 22 235799999999988887777765
No 161
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.21 E-value=0.19 Score=50.46 Aligned_cols=76 Identities=8% Similarity=0.098 Sum_probs=63.8
Q ss_pred CCccEEEEeccchhHHHHHHHHHh---CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccc----ccccCCCccE
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVRL 329 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~----~GiD~p~v~~ 329 (507)
.+.++||.++++.-+.++++.+++ .|+.+..+||+.+..+|....+.+..|+.+|+|+|.-.- .-++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 456899999999999999999988 588999999999999999889999999999999996532 1245567888
Q ss_pred EEE
Q 010563 330 VCH 332 (507)
Q Consensus 330 VI~ 332 (507)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 162
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.10 E-value=0.17 Score=45.09 Aligned_cols=131 Identities=17% Similarity=0.118 Sum_probs=64.4
Q ss_pred CCEEEEcCCCchHHHHHHHHH---hcCCCeEEEecChHH-HHHHHHHHHHHcCCceEEecCCCC--HHHHHHHHHHhhcC
Q 010563 54 RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA-LMENQVIGLKEKGIAGEFLSSTQT--MQVKTKIYEDLDSG 127 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~~~-L~~q~~~~l~~~gi~~~~~~~~~~--~~~~~~~~~~~~~~ 127 (507)
..+++..++|.|||.+.+--+ +-.+.+|+|+.-.+. .-..-.+.+..+++.......+.. .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~------- 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREAD------- 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHH-------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHH-------
Confidence 478899999999997765443 346677877743321 000001112223333222221111 0000000
Q ss_pred CCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChh
Q 010563 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (507)
Q Consensus 128 ~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~ 206 (507)
...-..-+....+....+.+++||+||+-....+|.--. ..+-.+....|...-+.+|+-..+.
T Consensus 102 ------------~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 102 ------------TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp ------------HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred ------------HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCcH
Confidence 000011222333444446799999999977666663222 2344445555655566666665554
No 163
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.01 E-value=0.11 Score=47.01 Aligned_cols=33 Identities=21% Similarity=0.081 Sum_probs=22.3
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEec
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~ 85 (507)
|.-+++.+|+|+|||.....-+......++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 455789999999999544332224456677765
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.97 E-value=0.19 Score=48.10 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=28.3
Q ss_pred ccccccccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 010563 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 6 ~p~~~~~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~ 70 (507)
.|+........++++.-.+...+.+.+...-. ....+++.||+|+|||...
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~--------------~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERK--------------NIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTT--------------CCCCEEEESSSSSSHHHHH
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCC--------------CCCeEEEECcCCcCHHHHH
Confidence 34444444444544544555555555432110 1125999999999999654
No 165
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.92 E-value=0.13 Score=59.33 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHH---HHhcC------CCeEEEecChHHHHHHHHHHHHH
Q 010563 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALAK------PGIVLVVSPLIALMENQVIGLKE 100 (507)
Q Consensus 37 ~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~l---p~l~~------~~~~lvi~P~~~L~~q~~~~l~~ 100 (507)
..+++-|.++|..- +++++|.|+.|||||.+..- -.+.. ...++++++|.+.+.+..+++..
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 35899999999764 78999999999999976532 22333 24799999999988887766655
No 166
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.73 E-value=0.34 Score=47.64 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=20.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcCCCeEE
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~l~~~~~~l 82 (507)
.+.+++.+|+|+|||......+-......+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 356999999999999765444333333333
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.67 E-value=0.43 Score=46.26 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
..+++.+|+|+|||.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4799999999999976543
No 168
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.61 E-value=0.3 Score=49.45 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=36.9
Q ss_pred ccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 010563 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~--~g~d~lv~apTG~GKTl~~~l 72 (507)
.+...|++++-.++..+.|++..-+.-.+| +.+..+- -.+.+|+.+|+|+|||+..-.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~p---e~f~~~Gi~pprGILLyGPPGTGKTlLAkA 262 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSP---ERFATLGIDPPKGILLYGPPGTGKTLCARA 262 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCH---HHHHHHTCCCCSEEEECSCTTSSHHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCH---HHHHHCCCCCCCceEeeCCCCCcHHHHHHH
Confidence 456788898888888888887532211111 1222221 236799999999999976543
No 169
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.49 E-value=0.3 Score=53.23 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=42.9
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEe
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi 84 (507)
+...|..+...++..+.|++..-+.-.+|.+..-+. +-..+.+++.+|+|+|||+..-.-+-..+...+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 456788888888888888876544432232211000 01125689999999999976655444444444433
No 170
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.41 E-value=0.72 Score=44.81 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=25.4
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010563 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (507)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (507)
..++||||+|.+.. .....|..+....+....+.++++...
T Consensus 111 ~~viiiDe~~~l~~------~~~~~L~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 111 FKLIILDEADAMTN------AAQNALRRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp CEEEEETTGGGSCH------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ceEEEEeCCCCCCH------HHHHHHHHHHhcCCCCeEEEEEecCcc
Confidence 67999999999854 223445556666665444555555443
No 171
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.39 E-value=0.17 Score=46.57 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=30.8
Q ss_pred HHHHHhhhccCCccEEEEeccccccccCC---CCHHHHHHHHHHHHhCCCCCEEEEeec
Q 010563 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGH---DFRPSYRKLSSLRNYLPDVPILALTAT 202 (507)
Q Consensus 147 ~~~l~~~~~~~~l~~iViDEaH~i~~~g~---~fr~~~~~l~~l~~~~~~~~~i~lSAT 202 (507)
...+.........+++|+|-...+..... ..+.....|..+...+ ++++++++-.
T Consensus 124 ~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~-~i~vi~~~q~ 181 (251)
T 2zts_A 124 LRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-GVTTILTTEA 181 (251)
T ss_dssp HHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-CCEEEEEECC
T ss_pred HHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc-CCCeEEEEEE
Confidence 33444444455688999999887743221 1333344454444443 6777776644
No 172
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.34 E-value=1.2 Score=43.66 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=25.4
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCCh
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~ 205 (507)
+...++||||+|.+.. .....|..+....|...++.++++-..
T Consensus 118 ~~~~vliiDe~~~l~~------~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR------HSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECGGGSCH------HHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECcchhcH------HHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 3457999999999754 223445555555444445555555433
No 173
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.32 E-value=0.92 Score=44.54 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCCCcHHH-------------HHHHHHHHc------CCCEEEEcCCCchHHHHHH-HH--HhcCCCeEE
Q 010563 25 ALVKLLRWHFGHAQFRDKQ-------------LDAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVL 82 (507)
Q Consensus 25 ~l~~~l~~~fg~~~~r~~Q-------------~~~i~~i~~------g~d~lv~apTG~GKTl~~~-lp--~l~~~~~~l 82 (507)
.....+.+.||-..+.+.. ...++.++. |+-+++.+|+|+|||...+ +. +...+..++
T Consensus 16 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vl 95 (356)
T 1u94_A 16 AALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCA 95 (356)
T ss_dssp HHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3444555667765543221 235677775 2457899999999995443 22 123456777
Q ss_pred EecC
Q 010563 83 VVSP 86 (507)
Q Consensus 83 vi~P 86 (507)
++..
T Consensus 96 yid~ 99 (356)
T 1u94_A 96 FIDA 99 (356)
T ss_dssp EEES
T ss_pred EEeC
Confidence 7765
No 174
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.22 E-value=0.091 Score=53.17 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=33.1
Q ss_pred ccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 010563 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~--~g~d~lv~apTG~GKTl~~~l 72 (507)
.+...|++++-.++..+.|++..-+.-.+| +.+..+- -.+.+|+.+|+|+|||+..-.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p---~~f~~~g~~~prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNP---EIFQRVGIKPPKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTSSHHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCeEEEECCCCCcHHHHHHH
Confidence 345667777766666666665422110011 1111111 126799999999999976543
No 175
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=92.06 E-value=1.4 Score=37.60 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=53.7
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
..+++||+++++.-+....+.|+..|+.+..+++..+...+......+..+. .+++++|.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vlv~T~ 93 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE--YRYLVATD 93 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 5678999999999999999999999999999999999999999999888875 77888773
No 176
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.02 E-value=0.39 Score=43.95 Aligned_cols=37 Identities=22% Similarity=0.026 Sum_probs=25.9
Q ss_pred CCCEEEEcCCCchHHHHHHHHH---hcCCCeEEEecChHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~~~ 89 (507)
|+=.+..+|.|+|||...+--+ ...+.+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 4556788999999996544332 345678888888753
No 177
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=91.99 E-value=0.54 Score=40.81 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=61.6
Q ss_pred EEEcCCCchHHHHHHHHHhc--CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEE
Q 010563 57 FCLMPTGGGKSMCYQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134 (507)
Q Consensus 57 lv~apTG~GKTl~~~lp~l~--~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 134 (507)
++..+....|-. .+.-.+. ..+++||+++++..+......|...|+.+..+++..+...+..+...+..+. .+++
T Consensus 12 ~~~~~~~~~K~~-~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~vL 88 (175)
T 2rb4_A 12 YVLCEHRKDKYQ-ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EKVL 88 (175)
T ss_dssp EEECSSHHHHHH-HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CSEE
T ss_pred EEEcCChHhHHH-HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEE
Confidence 444444444543 2333333 3578999999999999999999999999999999999999999999988775 7788
Q ss_pred EECc
Q 010563 135 YVTP 138 (507)
Q Consensus 135 ~~tp 138 (507)
++|.
T Consensus 89 vaT~ 92 (175)
T 2rb4_A 89 ITTN 92 (175)
T ss_dssp EECC
T ss_pred EEec
Confidence 8884
No 178
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.98 E-value=0.28 Score=46.87 Aligned_cols=19 Identities=21% Similarity=0.025 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
+.+++.+|+|+|||.....
T Consensus 37 ~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578889999999976543
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.89 E-value=0.4 Score=48.71 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=15.2
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
..+++.||+|+|||....
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 479999999999996554
No 180
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.89 E-value=2.1 Score=43.18 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=59.5
Q ss_pred CEEEEcCCCchHHHHHHHHH--h-cCCCeEEEec--ChHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHHhhcCC
Q 010563 55 DCFCLMPTGGGKSMCYQIPA--L-AKPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~--l-~~~~~~lvi~--P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (507)
-+++.+|+|+|||.....-+ + ..+.+++++. +.+.-+.+|...+.. .|++............
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~------------ 166 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIE------------ 166 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHH------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHH------------
Confidence 36778999999996543222 2 2455666655 444444455544433 3444332221111100
Q ss_pred CcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccccCCCCHHHHHHHHHHHH-hCCCCCEEEEeecCChhh
Q 010563 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YLPDVPILALTATAAPKV 207 (507)
Q Consensus 129 ~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~-~~~~~~~i~lSAT~~~~~ 207 (507)
+ ....+.. ......++++||++-.... +. -......+..+.. ..|+.-++.++|+.....
T Consensus 167 ------------i----~~~al~~-a~~~~~DvvIIDTaGr~~~-~~-d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a 227 (433)
T 3kl4_A 167 ------------I----AKKGVDI-FVKNKMDIIIVDTAGRHGY-GE-ETKLLEEMKEMYDVLKPDDVILVIDASIGQKA 227 (433)
T ss_dssp ------------H----HHHHHHH-TTTTTCSEEEEEECCCSSS-CC-TTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG
T ss_pred ------------H----HHHHHHH-HHhcCCCEEEEECCCCccc-cC-CHHHHHHHHHHHHhhCCcceEEEEeCccchHH
Confidence 0 0011111 1123478999999976430 01 1122333443333 235555677888876554
Q ss_pred H
Q 010563 208 Q 208 (507)
Q Consensus 208 ~ 208 (507)
.
T Consensus 228 ~ 228 (433)
T 3kl4_A 228 Y 228 (433)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.81 E-value=1.3 Score=39.10 Aligned_cols=74 Identities=23% Similarity=0.245 Sum_probs=59.4
Q ss_pred CCchHHHHHHHHHhc-CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 62 TGGGKSMCYQIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 62 TG~GKTl~~~lp~l~-~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
....|.. +++-.+. ..+++||+++++.-+....+.|+..|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 38 ~~~~K~~-~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~ 112 (191)
T 2p6n_A 38 KEEAKMV-YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK--KDVLVATD 112 (191)
T ss_dssp CGGGHHH-HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS--CSEEEECH
T ss_pred ChHHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CEEEEEcC
Confidence 3456753 3444443 3568999999999999999999999999999999999999999998888875 67777763
No 182
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.76 E-value=2.6 Score=42.47 Aligned_cols=51 Identities=18% Similarity=0.025 Sum_probs=29.7
Q ss_pred CEEEEcCCCchHHHHHH-H-HHhc-CCCeEEEec--ChHHHHHHHHHHHHH-cCCce
Q 010563 55 DCFCLMPTGGGKSMCYQ-I-PALA-KPGIVLVVS--PLIALMENQVIGLKE-KGIAG 105 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~-l-p~l~-~~~~~lvi~--P~~~L~~q~~~~l~~-~gi~~ 105 (507)
-+++.+++|+|||.+.. + ..+. .+.+++++. |.+.-+.+|...+.. .|++.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE
Confidence 46788999999996543 2 2233 344566655 555555555555443 44443
No 183
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.48 E-value=0.58 Score=48.13 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=19.3
Q ss_pred CCEEEEcCCCchHHHHHHHHHhcCCCeE
Q 010563 54 RDCFCLMPTGGGKSMCYQIPALAKPGIV 81 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~l~~~~~~ 81 (507)
+.+++.+|+|+|||+....-+-..+...
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~~~~f 266 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANETGAFF 266 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSEE
T ss_pred CcEEEECcCCCCHHHHHHHHHHHhCCCE
Confidence 5699999999999986654433333333
No 184
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.41 E-value=0.72 Score=44.63 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=33.2
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHHH-HHHHh-c-C------CCeEEEecChHHH-HHHHHHHHHHcCC
Q 010563 46 AIQAVLSG-----RDCFCLMPTGGGKSMCY-QIPAL-A-K------PGIVLVVSPLIAL-MENQVIGLKEKGI 103 (507)
Q Consensus 46 ~i~~i~~g-----~d~lv~apTG~GKTl~~-~lp~l-~-~------~~~~lvi~P~~~L-~~q~~~~l~~~gi 103 (507)
.++.++.| .-+++.+|+|+|||... ++..- . . ++.++++.--..+ ..+..+.++.+|+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~ 167 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGL 167 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCC
Confidence 45566643 45789999999999543 33332 2 2 4678888644322 2233334455554
No 185
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.40 E-value=1.6 Score=39.68 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=21.7
Q ss_pred CCCEEEEcCCCchHHHHHHHHHh---c------CCCeEEEec
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPAL---A------KPGIVLVVS 85 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~l---~------~~~~~lvi~ 85 (507)
|.-+.+.+|+|+|||.....-+. . ....++++.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 45688999999999965443222 2 145667665
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.40 E-value=1.6 Score=42.37 Aligned_cols=17 Identities=24% Similarity=0.297 Sum_probs=14.4
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
.+++.||+|+|||....
T Consensus 38 ~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999996553
No 187
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.05 E-value=2.9 Score=40.02 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=20.0
Q ss_pred CCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEec
Q 010563 54 RDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~-lp~l--~~~~~~lvi~ 85 (507)
+-+.+.+|+|+|||.... +... ..+++++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 346789999999995543 3322 2355565554
No 188
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.03 E-value=0.81 Score=39.65 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=54.0
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
..+++||+++++.-+....+.|...|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 89 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 89 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC--CcEEEECC
Confidence 4578999999999999999999999999999999999999999999988775 78888884
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.92 E-value=0.35 Score=47.30 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=32.9
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHHH-HHHHh--c------CCCeEEEecChHHH-HHHHHHHHHHcCC
Q 010563 46 AIQAVLSG-----RDCFCLMPTGGGKSMCY-QIPAL--A------KPGIVLVVSPLIAL-MENQVIGLKEKGI 103 (507)
Q Consensus 46 ~i~~i~~g-----~d~lv~apTG~GKTl~~-~lp~l--~------~~~~~lvi~P~~~L-~~q~~~~l~~~gi 103 (507)
.++.++.| .-+++.+|+|+|||... ++..- . .++.++++.--..+ ..+..+.+..+|+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~ 182 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV 182 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 35666643 45789999999999543 33332 2 35678888754321 1223333445554
No 190
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=90.80 E-value=2.4 Score=37.98 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=55.0
Q ss_pred cCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 76 ~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
...+.+||++|++.-++...+.|...|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vlvaT~ 89 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE--VRVLVATD 89 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS--CCEEEECT
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC--CeEEEecC
Confidence 45789999999999999999999999999999999999999999999988875 78888884
No 191
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.80 E-value=0.69 Score=39.67 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=53.4
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
..+++||+++++.-+....+.|+..|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcC
Confidence 4678999999999999999999999999999999999999999998888775 67887774
No 192
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.57 E-value=2.5 Score=39.56 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.7
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010563 50 VLSGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 50 i~~g~d~lv~apTG~GKTl~~ 70 (507)
+..|.-+++.+|+|+|||...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 446677899999999999544
No 193
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.56 E-value=0.84 Score=44.00 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=17.8
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHHH
Q 010563 46 AIQAVLSG-----RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 46 ~i~~i~~g-----~d~lv~apTG~GKTl~~ 70 (507)
.++.++.| .-+++.+|+|+|||...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 45666643 45789999999999443
No 194
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.53 E-value=3.2 Score=39.20 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=21.7
Q ss_pred cCCCEEEEcCCCchHHHHHH-HHHh--cCCC-eEEEec
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ-IPAL--AKPG-IVLVVS 85 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~-lp~l--~~~~-~~lvi~ 85 (507)
.|.-+++.+|+|+|||.... +... ...+ .++++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45667899999999995443 2222 1324 676665
No 195
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.17 E-value=2.1 Score=44.13 Aligned_cols=146 Identities=12% Similarity=-0.000 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCchHHHHHH-HHH--hcC-CCeEEEecChHHHHHHHHHHHHH--cCCceEE---ecCC-CCHHHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ-IPA--LAK-PGIVLVVSPLIALMENQVIGLKE--KGIAGEF---LSST-QTMQVKTKIYE 122 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~-lp~--l~~-~~~~lvi~P~~~L~~q~~~~l~~--~gi~~~~---~~~~-~~~~~~~~~~~ 122 (507)
|.-+++.|++|+|||...+ +.. ... +..+++++---. ..+.+.++.. .|+.... +..+ ........+..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 320 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 320 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 3457889999999995433 322 223 457888764322 2233333322 3332210 0000 00000111111
Q ss_pred HhhcCCCcccEEEEC-cccccChhhHHHHHhhhccCCccEEEEeccccccccCC-CCH-----HHHHHHHHHHHhCCCCC
Q 010563 123 DLDSGKPSLRLLYVT-PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFR-----PSYRKLSSLRNYLPDVP 195 (507)
Q Consensus 123 ~~~~~~~~~~il~~t-pe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~~g~-~fr-----~~~~~l~~l~~~~~~~~ 195 (507)
.+... ..+.+.. |...........+........+++||||=.+.+..-+. .-| .....|..+...+ +++
T Consensus 321 ~~~~~---~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~-~i~ 396 (503)
T 1q57_A 321 ELFGN---DTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKST-GVV 396 (503)
T ss_dssp HHHTT---TCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHH-TCE
T ss_pred HHhcc---CCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCe
Confidence 11111 2344332 21122233444454444445699999999887753211 111 1222333333332 777
Q ss_pred EEEEeecC
Q 010563 196 ILALTATA 203 (507)
Q Consensus 196 ~i~lSAT~ 203 (507)
+++++-.-
T Consensus 397 vi~~~q~~ 404 (503)
T 1q57_A 397 LVVICHLK 404 (503)
T ss_dssp EEEEEECC
T ss_pred EEEEEcCC
Confidence 77776543
No 196
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.08 E-value=1 Score=49.13 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~ 70 (507)
+.++++.+|+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 457999999999999754
No 197
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.94 E-value=4.3 Score=38.86 Aligned_cols=18 Identities=22% Similarity=-0.116 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~ 70 (507)
|+.+++.||.|+|||...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 577899999999999643
No 198
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.85 E-value=0.54 Score=47.17 Aligned_cols=59 Identities=10% Similarity=0.087 Sum_probs=34.7
Q ss_pred ccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHH
Q 010563 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~--~g~d~lv~apTG~GKTl~~~lp 73 (507)
.+...|++++-.++..+.|++..-+.-.+| +.+..+- -.+.+|+.+|+|+|||+..-.-
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~p---e~f~~~Gi~~prGvLLyGPPGTGKTlLAkAi 236 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHP---ELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCC---HHHHHHTCCCCSEEEEESSTTTTHHHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCCCceECCCCchHHHHHHHH
Confidence 456778888777777777766422110001 1111111 1367999999999999765433
No 199
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.80 E-value=1.4 Score=40.55 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
+.+++.+|+|+|||.....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARA 68 (254)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3489999999999965543
No 200
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.53 E-value=1.6 Score=49.87 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=64.4
Q ss_pred CCccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc-ccccccCCCccEEE
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GiD~p~v~~VI 331 (507)
.+.+++|.++|+.-+.+.++.+++. ++.+..+++..+..++..+++.+.+|+.+|+|+|.. +...+...++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4558999999999999888888753 678899999999999999999999999999999965 45557888888887
Q ss_pred E
Q 010563 332 H 332 (507)
Q Consensus 332 ~ 332 (507)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 3
No 201
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=89.38 E-value=0.8 Score=40.25 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=50.5
Q ss_pred CCchHHHHHHHHHh---cCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 62 TGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 62 TG~GKTl~~~lp~l---~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
....|-.. ++-.+ ...+++||+++++.-+....+.|+..|+.+..++++.+...+..+...+..+. .+++++|.
T Consensus 28 ~~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 104 (185)
T 2jgn_A 28 EESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 104 (185)
T ss_dssp CGGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS--SSEEEEEC
T ss_pred CcHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEcC
Confidence 35667532 22222 24678999999999999999999999999999999998888888888888775 67777763
No 202
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.37 E-value=0.62 Score=55.63 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=54.8
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHH---HHHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 010563 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (507)
Q Consensus 46 ~i~~i~~------g~d~lv~apTG~GKTl~~~---lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (507)
.++.++. |+.+++.+|+|+|||.... ..+..++.+++++..--++.... +++.|++..
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~---------- 1480 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID---------- 1480 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT----------
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch----------
Confidence 3677776 5789999999999996543 23344667788887654332221 344443211
Q ss_pred HHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
.+++..|+-. ..+...+.........++|||||..-+.
T Consensus 1481 ---------------~l~v~~~~~~--E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 ---------------NLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp ---------------TCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ---------------hceeecCChH--HHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 1233333311 1233333434344568999999997544
No 203
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.26 E-value=0.57 Score=53.27 Aligned_cols=76 Identities=8% Similarity=0.098 Sum_probs=64.1
Q ss_pred CCccEEEEeccchhHHHHHHHHHh---CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccc----ccccCCCccE
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVRL 329 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~---~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~----~GiD~p~v~~ 329 (507)
.+.++||.++|+.-+.++++.+++ .++.+..+||+++..+|....+.+.+|+.+|+|+|.-.- .-++..++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456799999999999999999998 577899999999998999999999999999999996422 1155678888
Q ss_pred EEE
Q 010563 330 VCH 332 (507)
Q Consensus 330 VI~ 332 (507)
||.
T Consensus 200 lVi 202 (1104)
T 4ddu_A 200 VFV 202 (1104)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 204
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.09 E-value=0.56 Score=42.40 Aligned_cols=38 Identities=24% Similarity=0.044 Sum_probs=24.3
Q ss_pred cCCCEEEEcCCCchHHHHHHHHH---hcCCCeEEEecChHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~~~ 89 (507)
.|.=.++.+|.|+|||...+--+ ...+.+++++.|.+.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 34456889999999996443222 234667888888654
No 205
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.85 E-value=5.1 Score=38.40 Aligned_cols=17 Identities=24% Similarity=0.032 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
.-+++.||.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57889999999999543
No 206
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=88.70 E-value=4 Score=41.39 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=60.6
Q ss_pred HHHHHH---cCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHH
Q 010563 46 AIQAVL---SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122 (507)
Q Consensus 46 ~i~~i~---~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~ 122 (507)
+|+.+. +|+.+++.+|.|.|||..... |+.++.. ..+.-..+...+....+....+.
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~-----------------l~~~~~~---~~~~i~V~~~iGerttev~el~~ 200 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQE-----------------LIHNIAQ---EHGGISVFAGVGERTREGNDLYH 200 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHH-----------------HHHHHHH---HTCCCEEEEEESSCHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHH-----------------HHhhhhh---ccCcEEEEeeeccCchHHHHHHH
Confidence 565553 688899999999999954321 1111111 11111222333344444444444
Q ss_pred HhhcC-CCcccEEEECcccccChhhHH-------HHHh-hhc-cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC
Q 010563 123 DLDSG-KPSLRLLYVTPELTATPGFMS-------KLKK-IHS-RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (507)
Q Consensus 123 ~~~~~-~~~~~il~~tpe~~~t~~~~~-------~l~~-~~~-~~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~ 192 (507)
.+..+ .-+.-+++.+ -..-+|++.. .+.+ +.. .++=-++++|+.|+ |-.+|+.+.......|
T Consensus 201 ~l~~~~~l~~tvvv~~-~~~d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR-------~a~A~reis~~~ge~P 272 (473)
T 1sky_E 201 EMKDSGVISKTAMVFG-QMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFR-------FTQAGSEVSALLGRMP 272 (473)
T ss_dssp HHHHTSGGGGEEEEEE-CTTSCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHH-------HHHHHHHHHHHHTCCC
T ss_pred HhhhcCCcceeEEEEE-cCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH-------HHHHHHHHHhhcCCCC
Confidence 33221 1111222222 1334454433 1122 222 34455899999998 6667788877777655
Q ss_pred C
Q 010563 193 D 193 (507)
Q Consensus 193 ~ 193 (507)
.
T Consensus 273 ~ 273 (473)
T 1sky_E 273 S 273 (473)
T ss_dssp C
T ss_pred c
Confidence 4
No 207
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.50 E-value=12 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
+.+++.+|+|+|||+....
T Consensus 65 ~GvLL~GppGtGKTtLara 83 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARA 83 (499)
T ss_dssp SEEEEECSSSSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3489999999999976544
No 208
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.07 E-value=2 Score=46.80 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=16.5
Q ss_pred CCEEEEcCCCchHHHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp~ 74 (507)
+.+|+.+|+|+|||+..-..+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 469999999999997654333
No 209
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.96 E-value=0.7 Score=42.35 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.|.-+.+.+|+|+|||....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH
Confidence 46678899999999996543
No 210
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.80 E-value=2.3 Score=39.19 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=50.1
Q ss_pred CCccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc-------cccccCC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-------GMGIDRK 325 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-------~~GiD~p 325 (507)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+.......+ .+..+|+|+|.-. ..+++..
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999999988887654 78889999998865543322 3467899999531 1234555
Q ss_pred CccEEE
Q 010563 326 DVRLVC 331 (507)
Q Consensus 326 ~v~~VI 331 (507)
++++||
T Consensus 186 ~~~~lV 191 (249)
T 3ber_A 186 ALKYLV 191 (249)
T ss_dssp TCCEEE
T ss_pred ccCEEE
Confidence 666655
No 211
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.63 E-value=1.7 Score=44.32 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
+.+++.+|+|+|||+....
T Consensus 50 ~gvLL~GppGtGKT~Lara 68 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARA 68 (476)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4599999999999976543
No 212
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.61 E-value=2.4 Score=46.90 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
.++++.||+|+|||....
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 479999999999996543
No 213
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.11 E-value=2 Score=42.10 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=17.6
Q ss_pred CCCEEEEcCCCchHHHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~ 74 (507)
+..+++.+|+|+|||.....-+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia 72 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLA 72 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4679999999999998765444
No 214
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=86.96 E-value=1.2 Score=46.16 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=54.3
Q ss_pred ccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC
Q 010563 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (507)
+.+||.++++.-+.+..+.|++.|+.+..+|++.+..++..+...+..|..+|+++|.
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 5789999999999999999999999999999999999999999999999999999985
No 215
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.93 E-value=0.93 Score=47.83 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=54.2
Q ss_pred CccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHH--hcCCceEEEEeCc
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW--ISSRKQVVVATVA 317 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f--~~g~~~VLVaT~a 317 (507)
.+.+||.++++.-+++..+.|.+.|+.+..++|+++..++..+...+ ..+..+|+++|.-
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 35799999999999999999999999999999999999999888888 4788999999973
No 216
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.90 E-value=2.4 Score=41.47 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=27.2
Q ss_pred HHHHHHHc-C-----CCEEEEcCCCchHHHHH-HHHH--hcCCCeEEEecC
Q 010563 45 DAIQAVLS-G-----RDCFCLMPTGGGKSMCY-QIPA--LAKPGIVLVVSP 86 (507)
Q Consensus 45 ~~i~~i~~-g-----~d~lv~apTG~GKTl~~-~lp~--l~~~~~~lvi~P 86 (507)
..++.++. | +-+++.+|+|+|||... ++.. ...++.++++.-
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35667776 3 45789999999999543 3322 234567777763
No 217
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=86.69 E-value=2.5 Score=40.33 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=55.3
Q ss_pred cCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcc
Q 010563 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (507)
Q Consensus 76 ~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe 139 (507)
...+.+||+++++.-++...+.|...|+.+..+++..+...+..+...+..+. .+++++|..
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~--~~vLVaT~v 87 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE--VRVLVATDV 87 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS--CCEEEECST
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEech
Confidence 34789999999999999999999999999999999999999999999988875 888888853
No 218
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=86.35 E-value=1.2 Score=42.86 Aligned_cols=18 Identities=11% Similarity=-0.034 Sum_probs=14.4
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~ 70 (507)
|.-+++.+|+|+|||...
T Consensus 123 gsviLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLV 140 (331)
T ss_dssp SEEEEEECSCSSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 455789999999999543
No 219
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.18 E-value=2.2 Score=38.14 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=50.8
Q ss_pred ccEEEEeccchhHHHHHHHHHhC-----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc------cccccCCCc
Q 010563 259 TCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDV 327 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~~GiD~p~v 327 (507)
.++||.++++.-+.++++.+++. ++.+..++|+.+...... .+.++..+|+|+|.-. ...++..++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 47999999999999998888764 688999999998765443 3455677899999531 122445556
Q ss_pred cEEE
Q 010563 328 RLVC 331 (507)
Q Consensus 328 ~~VI 331 (507)
++||
T Consensus 160 ~~lV 163 (220)
T 1t6n_A 160 KHFI 163 (220)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6655
No 220
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.15 E-value=0.57 Score=39.30 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=17.5
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.+..+++.+|+|+|||.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHH
Confidence 456899999999999976644
No 221
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.96 E-value=2.7 Score=49.49 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=51.5
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHH-HH--HhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 010563 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (507)
Q Consensus 46 ~i~~i~~------g~d~lv~apTG~GKTl~~~-lp--~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (507)
.++.++. |.-+++.+|+|+|||...+ +. +...++.+++++---.. .+.. .+.+|+..
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~-~ql~--A~~lGvd~----------- 784 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPIY--ARKLGVDI----------- 784 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHHH--HHHTTCCG-----------
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH-HHHH--HHHcCCCh-----------
Confidence 3555554 3568899999999995433 22 12345567777633222 1111 23333321
Q ss_pred HHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
-++++..+..+ ...+..+........+++||||+...+.
T Consensus 785 --------------~~L~i~~~~~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 785 --------------DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp --------------GGCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred --------------hheEEecCCcH--HHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 12344444321 2233333333334568999999999886
No 222
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.34 E-value=0.41 Score=45.21 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=31.1
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHH-HHHHHHHHH--cCCCEEEEcCCCchHHHHHHH
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~-Q~~~i~~i~--~g~d~lv~apTG~GKTl~~~l 72 (507)
+...|+++...+++.+.|++..- .|. ..+++..+- -.+.+++.+|+|+|||+..-.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~----~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL----APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT----HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH----HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 46778999988898888887432 121 122333321 123499999999999976543
No 223
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.82 E-value=0.99 Score=43.41 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=47.5
Q ss_pred CEEEEcCCCchHHHHHH-HHH--hcC--CCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCC
Q 010563 55 DCFCLMPTGGGKSMCYQ-IPA--LAK--PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~-lp~--l~~--~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (507)
-+++.+|+|+|||...+ +.+ ... ++.+++|..--++-. .+++++|+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~---~ra~~lGvd~------------------------ 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP---AYLRSMGVDP------------------------ 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH---HHHHHTTCCG------------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH---HHHHHhCCCH------------------------
Confidence 47889999999995432 221 222 567888876555422 1355555421
Q ss_pred cccEEEECcccccChhh-HHHHHhh--hccCCccEEEEecccccc
Q 010563 130 SLRLLYVTPELTATPGF-MSKLKKI--HSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 130 ~~~il~~tpe~~~t~~~-~~~l~~~--~~~~~l~~iViDEaH~i~ 171 (507)
-++++..|.... .. +..+..+ .....+++||||=+..+.
T Consensus 83 -d~llv~~~~~~E--~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 -ERVIHTPVQSLE--QLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -GGEEEEECSBHH--HHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -HHeEEEcCCCHH--HHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 134444443211 11 1111111 234568999999998875
No 224
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.54 E-value=0.89 Score=40.91 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=28.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 010563 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 36 ~~~~r~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~ 70 (507)
+...+..|..++..+..|.-+.+.+|.|+|||...
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33445577888999988988999999999999654
No 225
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=84.42 E-value=3.9 Score=40.42 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=53.2
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
..+++||+++++.-++...+.|+..|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS--SCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC--CCEEEECC
Confidence 4678999999999999999999999999999999999999999999888875 66777764
No 226
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.07 E-value=2.5 Score=38.52 Aligned_cols=70 Identities=9% Similarity=0.124 Sum_probs=49.8
Q ss_pred CccEEEEeccchhHHHHHHHHHh----CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc-----cc-ccccCCCc
Q 010563 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FG-MGIDRKDV 327 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~~-~GiD~p~v 327 (507)
+..+||.+++++-+.++++.+++ .++.+..++|+.+.......+.. ..+|+|+|.- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999999888777765 48889999999987765544332 4789999952 11 12455666
Q ss_pred cEEE
Q 010563 328 RLVC 331 (507)
Q Consensus 328 ~~VI 331 (507)
++||
T Consensus 178 ~~lV 181 (242)
T 3fe2_A 178 TYLV 181 (242)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 6665
No 227
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=84.07 E-value=1.5 Score=39.67 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=43.3
Q ss_pred CCccEEEEeccchhHHHHHHHHHhC-----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (507)
.+.++||.+++++-+.++++.+++. ++.+..++|+.+..++...+ ...+|+|+|.-
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~ 151 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPG 151 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHH
Confidence 3457999999999999999988763 67889999999876654432 25789999853
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.81 E-value=9.1 Score=39.10 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=19.6
Q ss_pred CEEEEcCCCchHHHHHHH-HHh--cCCCeEEEe
Q 010563 55 DCFCLMPTGGGKSMCYQI-PAL--AKPGIVLVV 84 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~l-p~l--~~~~~~lvi 84 (507)
-+.+++|+|+|||...-. ..+ ...+.+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 467899999999965432 222 245666665
No 229
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=83.60 E-value=11 Score=34.24 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.2
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
.+++.++.|.|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58899999999997643
No 230
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.49 E-value=6.8 Score=46.95 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=52.7
Q ss_pred HHHHHHHc------CCCEEEEcCCCchHHHHHH-HH--HhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHH
Q 010563 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115 (507)
Q Consensus 45 ~~i~~i~~------g~d~lv~apTG~GKTl~~~-lp--~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~ 115 (507)
..++.++. |.-+++.+|+|+|||...+ +. +...++.+++++---++-.. ..+.+|+..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~---~a~~lGvd~---------- 435 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDI---------- 435 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH---HHHHTTCCT----------
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHH---HHHHcCCCH----------
Confidence 35677775 3457889999999995433 22 12345577777643332111 133344321
Q ss_pred HHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccccc
Q 010563 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~ 171 (507)
-++++..|..+ ...+..+..+.....+++||||....+.
T Consensus 436 ---------------~~L~I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 436 ---------------DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ---------------TTCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ---------------HHeEEeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 12334444211 2223333333334568999999999886
No 231
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.41 E-value=1.3 Score=49.02 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.4
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
.+++.+|||+|||....
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 232
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.09 E-value=3.7 Score=45.00 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=17.3
Q ss_pred CCCEEEEcCCCchHHHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~ 74 (507)
++.+++.+|+|+|||+.....+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4679999999999997654443
No 233
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=83.05 E-value=3.9 Score=39.95 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=27.8
Q ss_pred HHHHHHHc-C-----CCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEecChH
Q 010563 45 DAIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPLI 88 (507)
Q Consensus 45 ~~i~~i~~-g-----~d~lv~apTG~GKTl~~~-lp~l--~~~~~~lvi~P~~ 88 (507)
..++.++. | .-+++.+|+|+|||...+ +... ..++.++++..-.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34666666 3 457889999999995432 2221 2456777776543
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=82.11 E-value=17 Score=34.99 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=27.5
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHH-HHhCCCCCEEEEeecCChhhHHH
Q 010563 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALTATAAPKVQKD 210 (507)
Q Consensus 159 l~~iViDEaH~i~~~g~~fr~~~~~l~~l-~~~~~~~~~i~lSAT~~~~~~~~ 210 (507)
.+++++|.+...... ... ...|..+ +...|+.+++.+.++........
T Consensus 212 ~d~vliDtaG~~~~~-~~l---~~eL~~i~ral~~de~llvLDa~t~~~~~~~ 260 (328)
T 3e70_C 212 IDVVLIDTAGRSETN-RNL---MDEMKKIARVTKPNLVIFVGDALAGNAIVEQ 260 (328)
T ss_dssp CSEEEEEECCSCCTT-TCH---HHHHHHHHHHHCCSEEEEEEEGGGTTHHHHH
T ss_pred chhhHHhhccchhHH-HHH---HHHHHHHHHHhcCCCCEEEEecHHHHHHHHH
Confidence 567889988664321 112 2333332 23447778888888877655443
No 235
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=81.98 E-value=9.2 Score=36.67 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=53.0
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
...++||+++++.-++...+.|++.|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK--IRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS--SSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 4568999999999999999999999999999999999999999998888775 77777774
No 236
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.96 E-value=9.1 Score=37.99 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=25.1
Q ss_pred HHHHHHc-----CCCEEEEcCCCchHHHHHH-HH-Hh-c------CCCeEEEecC
Q 010563 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IP-AL-A------KPGIVLVVSP 86 (507)
Q Consensus 46 ~i~~i~~-----g~d~lv~apTG~GKTl~~~-lp-~l-~------~~~~~lvi~P 86 (507)
.++.++. |.-+.+.+|+|+|||.... +. .. . ..+.++++.-
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 3555553 3457899999999995443 22 12 2 2456777753
No 237
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.88 E-value=2.9 Score=39.46 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
...+++.+|+|+|||....
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999996654
No 238
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.86 E-value=0.73 Score=46.54 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=30.4
Q ss_pred cCCCEEEEcCCCchHHHHH--HHHHh-cCCCeEEEecChHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALME 92 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~--~lp~l-~~~~~~lvi~P~~~L~~ 92 (507)
...++++.|+||+|||... +++.+ ..+..++|+=|--++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 3468999999999999765 44433 45677888888877753
No 239
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=81.48 E-value=11 Score=36.68 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=54.5
Q ss_pred cCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 76 ~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
...+++||+++++.-+....+.|+..|+.+..++++.+...+..+...+..+. .+++++|.
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 308 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 308 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC--CSEEEESC
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--CcEEEECC
Confidence 35689999999999999999999999999999999999999999999888775 77888884
No 240
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=81.46 E-value=14 Score=33.77 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.6
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~l 72 (507)
-+++.+|+|+|||.....
T Consensus 34 ~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEESCGGGTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976543
No 241
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=81.35 E-value=4 Score=40.16 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=54.1
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
..+++||+++++.-+....+.|+..|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 324 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK--EKVLVTTN 324 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC--CcEEEEcC
Confidence 3579999999999999999999999999999999999999999999998875 77888775
No 242
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.21 E-value=1.9 Score=44.51 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=22.6
Q ss_pred CcHHHHHHHHH-HHcCCCEEEEcCCCchHHHH
Q 010563 39 FRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMC 69 (507)
Q Consensus 39 ~r~~Q~~~i~~-i~~g~d~lv~apTG~GKTl~ 69 (507)
+.+.+.+-+.. +-.|..+++.+|||+|||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44555555544 34678899999999999964
No 243
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=80.86 E-value=4.4 Score=39.81 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=53.8
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
..+++||+++++.-++...+.|+..|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK--VRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS--SSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcC
Confidence 4578999999999999999999999999999999999999999999888775 77888884
No 244
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=80.47 E-value=4.5 Score=39.42 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=53.9
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
..+++||+++++.-++...+.|+..|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 301 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR--SKVLITTN 301 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CCEEEECG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 3578999999999999999999999999999999999999999999998875 77887775
No 245
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=80.41 E-value=2 Score=41.32 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=19.2
Q ss_pred HHHHcCCCEEEEcCCCchHHHHHH
Q 010563 48 QAVLSGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 48 ~~i~~g~d~lv~apTG~GKTl~~~ 71 (507)
.++..++.+++.+|+|+|||....
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 344568899999999999996543
No 246
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=80.02 E-value=2.3 Score=44.23 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.5
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
|..+++.+|+|+|||.....
T Consensus 108 g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56799999999999976543
No 247
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.31 E-value=4 Score=35.88 Aligned_cols=55 Identities=22% Similarity=0.171 Sum_probs=41.5
Q ss_pred CccEEEEeccchhHHHHHHHHHhC-----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (507)
+.++||.++++.-+.++++.+++. +..+..++|+.+..+... . ..+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---R-LDDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---H-TTSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---h-cCCCCCEEEeCH
Confidence 457999999999999988888653 577888999987654322 1 235678999995
No 248
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.29 E-value=4.2 Score=35.74 Aligned_cols=55 Identities=22% Similarity=0.155 Sum_probs=41.6
Q ss_pred CccEEEEeccchhHHHHHHHHHhC--CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~--g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (507)
+.++||.++++.-+.++++.+++. ++.+..++|+.+.......+. ...+|+|+|.
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 457999999999999999999875 467888999887654433222 2467999985
No 249
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=79.27 E-value=5 Score=39.57 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=53.7
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
..+++||+++++.-++...+.|+..|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 334 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA--SRVLISTD 334 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS--SCEEEECG
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 3568999999999999999999999999999999999999999999988875 77888775
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=79.12 E-value=38 Score=31.76 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=20.4
Q ss_pred CCCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEec
Q 010563 53 GRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~-lp~l--~~~~~~lvi~ 85 (507)
++-+.+.+++|+|||.... +..+ ..+++++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4456677999999995443 3322 2456666653
No 251
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.04 E-value=1.7 Score=43.68 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHHc--CCCEEEEcCCCchHHHH
Q 010563 39 FRDKQLDAIQAVLS--GRDCFCLMPTGGGKSMC 69 (507)
Q Consensus 39 ~r~~Q~~~i~~i~~--g~d~lv~apTG~GKTl~ 69 (507)
+.+.+..++..++. |.-+++.+|||+|||..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 44567777777664 33478999999999954
No 252
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=78.85 E-value=3.2 Score=37.33 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=44.8
Q ss_pred CCccEEEEeccchhHHHHHHHHHhC---CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc------cccccCCCc
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDV 327 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~~GiD~p~v 327 (507)
.+.++||.+++++-+.++++.+++. ++.+..++|+.+...+... +. ...+|+|+|.-- ...++..++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3557999999999999999998873 7788888988765543322 22 347899999521 123445556
Q ss_pred cEEE
Q 010563 328 RLVC 331 (507)
Q Consensus 328 ~~VI 331 (507)
++||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 5555
No 253
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=78.80 E-value=6.4 Score=38.51 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=17.2
Q ss_pred CCCEEEEcCCCchHHHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~ 74 (507)
...+++.+|+|+|||.....-+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 3579999999999997664433
No 254
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.61 E-value=2.8 Score=38.08 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=42.4
Q ss_pred CCccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC-----ccccc-ccCCC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKD 326 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~-----a~~~G-iD~p~ 326 (507)
.+.++||.++++.-+.++++.+++. +..+..++|+.+... ..+.+..+..+|+|+|. .+..+ ++..+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3457999999999999999888764 567777888765432 23345567788999993 22222 34455
Q ss_pred ccEEE
Q 010563 327 VRLVC 331 (507)
Q Consensus 327 v~~VI 331 (507)
+++||
T Consensus 174 ~~~lV 178 (237)
T 3bor_A 174 IKMFV 178 (237)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 56555
No 255
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.25 E-value=0.78 Score=46.18 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=32.8
Q ss_pred cccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHHHH
Q 010563 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 13 ~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i--~~g~d~lv~apTG~GKTl~~~lp 73 (507)
+...|++++-.++..+.|++..-+.-.+| +.+..+ --.+.+++.||+|+|||+..-.-
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p---~~~~~~g~~~prGiLL~GPPGtGKT~lakAi 226 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQA---DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTTTHHHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCceEEEECCCCCCHHHHHHHH
Confidence 45667777766776666666422110111 111111 11256999999999999765433
No 256
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=77.36 E-value=2.9 Score=42.94 Aligned_cols=28 Identities=36% Similarity=0.408 Sum_probs=21.8
Q ss_pred HHHHHHHcCCCEEEEcCCCchHHHHHHH
Q 010563 45 DAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 45 ~~i~~i~~g~d~lv~apTG~GKTl~~~l 72 (507)
.++.++..+..+++.||+|+|||.....
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHHHH
Confidence 3445556788999999999999976543
No 257
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=76.90 E-value=37 Score=33.98 Aligned_cols=42 Identities=26% Similarity=0.116 Sum_probs=24.3
Q ss_pred CEEEEcCCCchHHHHHHH-H-Hhc-C-CCeEEEec--ChHHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQI-P-ALA-K-PGIVLVVS--PLIALMENQVI 96 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~l-p-~l~-~-~~~~lvi~--P~~~L~~q~~~ 96 (507)
.+++.+++|+|||.+..- . .+. . +.+++++. |.+..+.+|..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~ 149 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE 149 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH
Confidence 466779999999965432 2 222 3 55666654 44444444443
No 258
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=76.62 E-value=3.6 Score=42.10 Aligned_cols=49 Identities=14% Similarity=0.037 Sum_probs=39.6
Q ss_pred CCCEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHHHHc
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~ 101 (507)
|....+.+-||+|||++..-.+-..++.+|||+|....+.+..+.|+.+
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 4567889999999997544333344678999999999999999999986
No 259
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.59 E-value=1.5 Score=41.91 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=23.3
Q ss_pred cCCCEEEEcCCCchHHHHHH-HHHhcCCCeEEEecC
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ-IPALAKPGIVLVVSP 86 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~-lp~l~~~~~~lvi~P 86 (507)
.|+-+.+++|+|+|||...- +.-+. .|.+++.+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~ 159 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFAN 159 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEec
Confidence 56778899999999995443 33334 677765443
No 260
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=76.35 E-value=8.4 Score=35.55 Aligned_cols=71 Identities=15% Similarity=0.102 Sum_probs=49.8
Q ss_pred CccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc-----c--cccccCCC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----F--GMGIDRKD 326 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~--~~GiD~p~ 326 (507)
+.++||.++++.-+.++++.+++. +..+..++|+......... +..+ .+|+|+|.- + ..+++..+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 457999999999999998888763 5677888998876554332 3334 789999942 1 12456667
Q ss_pred ccEEEE
Q 010563 327 VRLVCH 332 (507)
Q Consensus 327 v~~VI~ 332 (507)
+++||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777663
No 261
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=76.21 E-value=11 Score=37.65 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=52.7
Q ss_pred CCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 78 ~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
...+||+++++.-+....+.|+..|+++..+++.....++..+...+..+. .+++++|.
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS--MKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSS--CSEEEECG
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEEch
Confidence 345999999999999999999999999999999999999999999998875 77888775
No 262
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=75.50 E-value=11 Score=40.18 Aligned_cols=82 Identities=29% Similarity=0.265 Sum_probs=64.6
Q ss_pred cCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhc
Q 010563 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (507)
Q Consensus 76 ~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~ 155 (507)
..+.++||+++++.-++...+.|+..|+++..+++..+...+..+...+..+. ++++++|.-. ..|+ +
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~VLVaT~~l--~~Gl--------D 510 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK--YDVLVGINLL--REGL--------D 510 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS--CSEEEESCCC--STTC--------C
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC--eEEEEecchh--hCCc--------c
Confidence 35679999999999999999999999999999999999999999988888775 7788877532 2221 2
Q ss_pred cCCccEEEEecccc
Q 010563 156 RGLLNLVAIDEAHC 169 (507)
Q Consensus 156 ~~~l~~iViDEaH~ 169 (507)
...++++|+=+++.
T Consensus 511 ip~v~lVi~~d~d~ 524 (661)
T 2d7d_A 511 IPEVSLVAILDADK 524 (661)
T ss_dssp CTTEEEEEETTTTC
T ss_pred cCCCCEEEEeCccc
Confidence 23367788777765
No 263
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.42 E-value=1.8 Score=43.66 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=38.3
Q ss_pred ccccCCCCCChHHHHHHHHHHhcCCCCCcHHHHHHHHHHH--cCCCEEEEcCCCchHHHHHHHHHhcCCCeEEEe
Q 010563 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (507)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~l~~~fg~~~~r~~Q~~~i~~i~--~g~d~lv~apTG~GKTl~~~lp~l~~~~~~lvi 84 (507)
.+...|+++.-.++..+.|++..-+.-.+| +.+..+- -.+.+|+.||+|+|||+..-..+-..+...+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~p---e~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRA---DKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCS---HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 345678887777777777766421110001 1111111 136799999999999976543333333333333
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=75.15 E-value=13 Score=34.83 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=19.9
Q ss_pred CEEEEcCCCchHHHHHHHHHhcCCCeEEEecC
Q 010563 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P 86 (507)
-+++.||+|+|||...-.-+-......++|+.
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 47889999999997554332222234455654
No 265
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=75.06 E-value=11 Score=40.11 Aligned_cols=82 Identities=24% Similarity=0.228 Sum_probs=63.9
Q ss_pred cCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhc
Q 010563 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (507)
Q Consensus 76 ~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~ 155 (507)
..+.++||+++++.-++...+.|...|+++..+++......+..+...+..+. ++++++|.-. ..|+ +
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~--~~VLvaT~~l--~~Gl--------D 504 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH--YDCLVGINLL--REGL--------D 504 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS--CSEEEESCCC--CTTC--------C
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC--ceEEEccChh--hcCc--------c
Confidence 35789999999999999999999999999999999999999999988888775 7788877422 2221 2
Q ss_pred cCCccEEEEecccc
Q 010563 156 RGLLNLVAIDEAHC 169 (507)
Q Consensus 156 ~~~l~~iViDEaH~ 169 (507)
...++++|+=+++.
T Consensus 505 ip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 505 IPEVSLVAILDADK 518 (664)
T ss_dssp CTTEEEEEETTTTS
T ss_pred CCCCCEEEEeCCcc
Confidence 22367777766654
No 266
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.93 E-value=1.8 Score=41.89 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=14.0
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
+-+++.+|||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35789999999999654
No 267
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=74.86 E-value=1.7 Score=37.69 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.|+-+++++|+|+|||....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46668899999999997543
No 268
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=74.62 E-value=71 Score=31.75 Aligned_cols=42 Identities=19% Similarity=0.101 Sum_probs=23.7
Q ss_pred CEEEEcCCCchHHHHHHH-HH-hc-CCCeEEEec--ChHHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQI-PA-LA-KPGIVLVVS--PLIALMENQVI 96 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~l-p~-l~-~~~~~lvi~--P~~~L~~q~~~ 96 (507)
-+.+.+|+|+|||..... .. +. .+++++++. +.+..+.+|..
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~ 146 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR 146 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHH
Confidence 466779999999965432 22 22 355666554 34444444433
No 269
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=74.55 E-value=2 Score=42.15 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=17.6
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010563 50 VLSGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 50 i~~g~d~lv~apTG~GKTl~~ 70 (507)
+..|+.+++++|||+|||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 446889999999999999654
No 270
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=74.37 E-value=7.3 Score=35.08 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=40.1
Q ss_pred CCccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (507)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3457999999999999999888764 47888999988655433322 4578999985
No 271
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=76.27 E-value=0.65 Score=40.11 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=48.8
Q ss_pred CCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEEC
Q 010563 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (507)
Q Consensus 78 ~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (507)
.+++||+++++.-+....+.|+..|+.+..+++..+...+..+...+..+. .+++++|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR--VNVLVAT 87 (170)
Confidence 467899999999999999999999999999999988888888887777664 6676666
No 272
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.74 E-value=2 Score=38.04 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=14.8
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~ 70 (507)
.|+-+.+++|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999654
No 273
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=73.61 E-value=2.9 Score=37.41 Aligned_cols=55 Identities=18% Similarity=0.087 Sum_probs=35.3
Q ss_pred CCccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (507)
.+.++||.++++.-+.++++.+++. ++.+..++|+.+..+.... +. ..+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECH
Confidence 3457999999999999998888753 6788889998765443322 22 267888884
No 274
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=73.49 E-value=2.7 Score=33.13 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=33.2
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCCH
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 294 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~ 294 (507)
...+++|||.+-..+...+..|++.|+++..+.||+..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 34579999999888999999999999999999998754
No 275
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=73.23 E-value=2.5 Score=32.72 Aligned_cols=37 Identities=14% Similarity=0.406 Sum_probs=32.5
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (507)
...+++|||.+-..+...+..|++.|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3467999999999999999999999999889999874
No 276
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=72.93 E-value=2.4 Score=40.65 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=13.6
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
-+++.+|||+|||....
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 46789999999996543
No 277
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=72.79 E-value=2.5 Score=32.85 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=32.4
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (507)
...+++|||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3457999999998999999999999999899998874
No 278
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=72.76 E-value=57 Score=29.79 Aligned_cols=177 Identities=10% Similarity=0.017 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 010563 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (507)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (507)
.++....+.+++.|....+................+.... ++-++..|... .......+ ....+.+|++|...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~-~~~~~~~~----~~~~iPvV~~~~~~ 97 (291)
T 3egc_A 25 EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERR--VDGLILAPSEG-EHDYLRTE----LPKTFPIVAVNREL 97 (291)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCSS-CCHHHHHS----SCTTSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCC--CCEEEEeCCCC-ChHHHHHh----hccCCCEEEEeccc
Confidence 3445555667778888877776655555555555555443 55555555433 22222222 22347788887543
Q ss_pred c---ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHH-------HHHHHhCCCCCeEEeccCCCCceEEEEEe
Q 010563 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK-------DVMESLCLQNPLVLKSSFNRPNLFYEVRY 238 (507)
Q Consensus 169 ~---i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~-------~i~~~l~~~~~~~~~~~~~~~ni~~~v~~ 238 (507)
. +..-+.|.......+...........+.+++......... +..+..++.... ..+.. .
T Consensus 98 ~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--------~~~~~---~ 166 (291)
T 3egc_A 98 RIPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQ--------EWIAA---G 166 (291)
T ss_dssp CCTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCG--------GGEEC----
T ss_pred CCCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCH--------HHeEe---C
Confidence 2 1112223333333343333334667788887765422111 112222222110 00000 0
Q ss_pred ecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCc
Q 010563 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (507)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~ 284 (507)
....+...+.+.+++...+ ...-|||.+-..+..+.+.|++.|+.
T Consensus 167 ~~~~~~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 167 GVRADNGRDGAIKVLTGAD-RPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp -----CCHHHHHHHHTC-C-CCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred CCChhHHHHHHHHHHhCCC-CCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 0111233455666665543 45678888888888888888876654
No 279
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=72.72 E-value=1.6 Score=40.66 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.0
Q ss_pred HcCCCEEEEcCCCchHHHHH
Q 010563 51 LSGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 51 ~~g~d~lv~apTG~GKTl~~ 70 (507)
..|.-+++.+|||+|||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 35667889999999999643
No 280
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=72.54 E-value=2 Score=40.69 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.6
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
.+++.+|+|+|||....
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58999999999997654
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=72.47 E-value=2.1 Score=37.78 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=17.3
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.++.+++.+|+|+|||.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 567889999999999976543
No 282
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.11 E-value=5.4 Score=47.05 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=60.5
Q ss_pred HHHHHHc------CCCEEEEcCCCchHHHHHHH---HHhcCCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHH
Q 010563 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (507)
Q Consensus 46 ~i~~i~~------g~d~lv~apTG~GKTl~~~l---p~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~ 116 (507)
.++.++. |+-+.+.+|.|+|||...+- .+..+++.+++|.+--+|-... ++++|+...
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~---------- 1484 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID---------- 1484 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGG----------
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHH----------
Confidence 4566664 35689999999999965432 2334688899998876664332 566665432
Q ss_pred HHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccccc
Q 010563 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i~~ 172 (507)
++++.-|+.- ...+.....+...+.+++||||..-.+..
T Consensus 1485 ---------------~l~~~~p~~~--e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ---------------NLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ---------------GCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ---------------HeEEeCCCcH--HHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 2334444322 22333344455556689999999888754
No 283
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=72.10 E-value=5.1 Score=35.82 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHcC----CCEEEEcCCCchHHHHH
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~g----~d~lv~apTG~GKTl~~ 70 (507)
..+.+.|+-. | ..|-.+ ...+..++++ +.+++.+|+|+|||..+
T Consensus 28 ~~I~~~l~yq-~-~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQ-Q-IEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHT-T-CCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHc-C-cCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 4556666532 3 334445 5566666665 24889999999999654
No 284
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=71.91 E-value=2.2 Score=38.05 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.|+-+++.+|+|+|||.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 355678899999999976543
No 285
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=71.86 E-value=2.5 Score=40.48 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.7
Q ss_pred EEEEcCCCchHHHHH
Q 010563 56 CFCLMPTGGGKSMCY 70 (507)
Q Consensus 56 ~lv~apTG~GKTl~~ 70 (507)
+++.+|||+|||...
T Consensus 13 i~i~GptgsGKt~la 27 (316)
T 3foz_A 13 IFLMGPTASGKTALA 27 (316)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 678999999999654
No 286
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=71.34 E-value=2.3 Score=41.23 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.4
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010563 50 VLSGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 50 i~~g~d~lv~apTG~GKTl~~ 70 (507)
+..|+.+++.+|||+|||...
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 346889999999999999643
No 287
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=71.31 E-value=3.3 Score=38.34 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=17.1
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.+..+++.+|+|+|||.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHH
Confidence 456899999999999976544
No 288
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=71.18 E-value=22 Score=36.48 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=22.4
Q ss_pred cCCCEEEEcCCCchHHHHHH-HHHh--cCCCeEEEecCh
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPL 87 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~-lp~l--~~~~~~lvi~P~ 87 (507)
.|.-+++.+|+|+|||.... +..+ ..+..++++++-
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 45568899999999995433 2211 234456666643
No 289
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=71.07 E-value=3 Score=40.83 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=18.4
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
++.++.|.+ +|+-+.||+|||.+.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 455678877 567779999999765
No 290
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=70.64 E-value=10 Score=39.56 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=53.0
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHc---CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
....+||+++++.-++...+.|+.. |+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~--~~vLVaT~ 349 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTD 349 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECG
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC--CeEEEEcc
Confidence 3678999999999999999999886 899999999999999999999998875 77888775
No 291
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=70.50 E-value=3.3 Score=39.96 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=19.0
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~~ 71 (507)
++.++.|.+ +++-++||+|||.+..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEec
Confidence 445668877 5777899999997753
No 292
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=70.42 E-value=17 Score=37.58 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=53.1
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHc---CCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~---gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
....+||+++++.-+....+.|+.. |+.+..++++.+...+..+...+..+. .+++++|.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~ 400 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTD 400 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECG
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC--CCEEEEcc
Confidence 4679999999999999999999886 899999999999999999999998875 77888775
No 293
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=70.30 E-value=2.2 Score=37.56 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.|.-+.+.+|+|+|||...-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46667899999999997543
No 294
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=69.94 E-value=3.2 Score=32.48 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=31.4
Q ss_pred CccEEEEeccchhHHHHHHHHHhCCCceeEecCCCC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (507)
..+++|||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 457999999988899999999999999888888763
No 295
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=69.55 E-value=3.2 Score=31.61 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=31.2
Q ss_pred ccEEEEeccchhHHHHHHHHHhCCCceeEecCCCC
Q 010563 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (507)
.+++|||.+-..+...+..|++.|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999988899999999999999888888875
No 296
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=69.39 E-value=2.6 Score=36.42 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
++.+++.+|+|+|||.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45688999999999976543
No 297
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=69.30 E-value=53 Score=33.53 Aligned_cols=41 Identities=17% Similarity=0.055 Sum_probs=23.4
Q ss_pred CEEEEcCCCchHHHHHHHHH--hc-CCCeEEEecC--hHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIPA--LA-KPGIVLVVSP--LIALMENQV 95 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~--l~-~~~~~lvi~P--~~~L~~q~~ 95 (507)
.+++++++|+|||....--+ +. .+.+++++.. .+..+.+|.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHH
Confidence 36788999999996543222 22 3455666653 333333443
No 298
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=68.93 E-value=69 Score=29.17 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECccccc----ChhhHHHHHhhhccCCccEEEE
Q 010563 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA----TPGFMSKLKKIHSRGLLNLVAI 164 (507)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~----t~~~~~~l~~~~~~~~l~~iVi 164 (507)
.+.....+.+++.|....+................+.... ++-++..|.... .......+.. ..+.+|++
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~~~~----~~iPvV~~ 105 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQH--IDGLIVEPTKSALQTPNIGYYLNLEK----NGIPFAMI 105 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTC--CSEEEECCSSTTSCCTTHHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCC--CCEEEEecccccccCCcHHHHHHHHh----cCCCEEEE
Confidence 4555555667778888887776655555455555555443 555555553221 1222333322 23778888
Q ss_pred ecccc---ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHHH------HHHHhCCCCCeEEeccCCCCceEEE
Q 010563 165 DEAHC---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD------VMESLCLQNPLVLKSSFNRPNLFYE 235 (507)
Q Consensus 165 DEaH~---i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~------i~~~l~~~~~~~~~~~~~~~ni~~~ 235 (507)
|.... +..-+.|.......+...........+.+++.......... ..+..++... ......
T Consensus 106 ~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~---------~~~~~~ 176 (298)
T 3tb6_A 106 NASYAELAAPSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPS---------PDMIVT 176 (298)
T ss_dssp SSCCTTCSSCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCC---------GGGEEE
T ss_pred ecCcCCCCCCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCC---------cceEEE
Confidence 74321 11112233333333433333345667777776554322111 1112222111 111111
Q ss_pred EEeecchhhHHHHHHHHHHhcCCc-cEEEEeccchhHHHHHHHHHhCCCc
Q 010563 236 VRYKDLLDDAYADLCSVLKANGDT-CAIVYCLERTTCDELSAYLSAGGIS 284 (507)
Q Consensus 236 v~~~~~~~~~~~~l~~~l~~~~~~-~~IVf~~s~~~~~~l~~~L~~~g~~ 284 (507)
...........+.+.++++..+.. ..-|||.+-..+..+...|++.|+.
T Consensus 177 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 177 FTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp ECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred ecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 111111111266677788776542 5678898888888889999888764
No 299
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=68.91 E-value=18 Score=28.11 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=40.9
Q ss_pred EEEEeccchhHHHHHHHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceE
Q 010563 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (507)
Q Consensus 261 ~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~V 311 (507)
.+||.+..+-..++...++..|..+..++++.+.+.|.+-++.|...-.+|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 356667777778888888889999999999999999999999987654444
No 300
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=68.79 E-value=3.4 Score=40.16 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=18.2
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
++.++.|.+ +|+-+.||+|||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344567877 567789999999774
No 301
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=68.77 E-value=3.7 Score=40.15 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=19.1
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 46 ~i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
.++.++.|.+ +++-++||+|||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3455678887 567789999999775
No 302
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=68.70 E-value=4.4 Score=37.84 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhcCCCCCcHHHHH-HHHHHHcCC-----CEEEEcCCCchHHHHHH
Q 010563 22 EKEALVKLLRWHFGHAQFRDKQLD-AIQAVLSGR-----DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 22 l~~~l~~~l~~~fg~~~~r~~Q~~-~i~~i~~g~-----d~lv~apTG~GKTl~~~ 71 (507)
....+.+.|+- -|++ |.+.. ++..++.++ .+++.+|+|+|||+.+.
T Consensus 71 ~~n~i~~~l~~-qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 71 SSNRIYKILEL-NGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GGCHHHHHHHH-TTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred chHHHHHHHHH-cCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34567777754 3655 55543 466677664 38899999999997654
No 303
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=68.54 E-value=3.8 Score=39.95 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=25.2
Q ss_pred hcCCCC---CcHHHHHHH--------HHHHcCCC--EEEEcCCCchHHHHH
Q 010563 33 HFGHAQ---FRDKQLDAI--------QAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 33 ~fg~~~---~r~~Q~~~i--------~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
.|.|+. +...|.+++ +.++.|.+ +|+-+.||+|||.+.
T Consensus 57 ~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 57 TFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred EeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 455543 234565554 45678876 567789999999764
No 304
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=68.48 E-value=3.7 Score=40.38 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=18.2
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
++.++.|.+ +|+-+.||+|||.+.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 345678877 567779999999764
No 305
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=68.44 E-value=3.7 Score=40.01 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=18.5
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
++.++.|.+ +++-++||+|||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 455678876 567789999999765
No 306
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=68.29 E-value=3.8 Score=40.16 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=18.3
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
++.++.|.+ +|+-+.||+|||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 345668876 567789999999774
No 307
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=68.28 E-value=3.9 Score=39.53 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=19.9
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 46 ~i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
.+..++.|.+ +++-++||+|||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 5667788987 567789999999765
No 308
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=68.22 E-value=3.5 Score=41.07 Aligned_cols=25 Identities=32% Similarity=0.679 Sum_probs=18.9
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~~ 71 (507)
++.++.|.+ +|+-+.||+|||.+..
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEee
Confidence 445678876 5677899999997753
No 309
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=68.10 E-value=4.6 Score=32.74 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=32.2
Q ss_pred ccEEEEe-ccchhHHHHHHHHHhCCCceeEecCCCCHH
Q 010563 259 TCAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLNDK 295 (507)
Q Consensus 259 ~~~IVf~-~s~~~~~~l~~~L~~~g~~~~~~h~~l~~~ 295 (507)
.++|||| .+-..+...+..|+..|+++..+.||+..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 6899999 577788899999999999999999998653
No 310
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=68.07 E-value=3.5 Score=35.10 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCchHHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp 73 (507)
+..+++.+|.|+|||...-+-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 456899999999999765443
No 311
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=67.99 E-value=2.4 Score=36.83 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.|.-+++.+|+|+|||...-.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456688999999999975543
No 312
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=67.96 E-value=2.5 Score=37.50 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=17.5
Q ss_pred HHcCCCEEEEcCCCchHHHHHH
Q 010563 50 VLSGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 50 i~~g~d~lv~apTG~GKTl~~~ 71 (507)
+..|+-+++.+|+|+|||....
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHH
Confidence 3467788999999999996543
No 313
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=67.77 E-value=4 Score=39.70 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=18.1
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
++.++.|.+ +++-++||+|||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 344567877 567789999999764
No 314
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=67.54 E-value=3.9 Score=39.95 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 46 ~i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
.++.++.|.+ +|+-+.||+|||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3455668887 466779999999764
No 315
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=67.52 E-value=3.5 Score=35.92 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
+-+.+.+|+|+|||...-
T Consensus 2 ~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 446789999999997543
No 316
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=67.43 E-value=3.5 Score=37.08 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=16.6
Q ss_pred HcCCCEEEEcCCCchHHHHHH
Q 010563 51 LSGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 51 ~~g~d~lv~apTG~GKTl~~~ 71 (507)
-.|+-+.+++|+|+|||...-
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 367788999999999996543
No 317
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=67.37 E-value=3.7 Score=40.10 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=17.7
Q ss_pred HHHHcCCC--EEEEcCCCchHHHHH
Q 010563 48 QAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 48 ~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
+.++.|.+ +|+-++||+|||.+.
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34567876 567789999999765
No 318
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=67.32 E-value=2.7 Score=36.96 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.|.-+.+.+|+|+|||...-+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 566788999999999965543
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=67.30 E-value=3 Score=38.58 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=12.7
Q ss_pred EEEEcCCCchHHHHH
Q 010563 56 CFCLMPTGGGKSMCY 70 (507)
Q Consensus 56 ~lv~apTG~GKTl~~ 70 (507)
+++.+|||+|||...
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 578999999999654
No 320
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=67.25 E-value=4.1 Score=40.53 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=20.1
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHHH
Q 010563 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 46 ~i~~i~~g~d--~lv~apTG~GKTl~~~ 71 (507)
.++.++.|.+ +|+-+.||+|||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4566778987 5677899999998754
No 321
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=67.23 E-value=4.1 Score=39.96 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=18.3
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
++.++.|.+ +|+-+.||+|||.+.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 445678877 567789999999764
No 322
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=67.16 E-value=2.5 Score=35.83 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~l 72 (507)
+++.||+|+|||.....
T Consensus 4 I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999976543
No 323
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=67.05 E-value=3.9 Score=39.99 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=18.2
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
++.++.|.+ +++-++||+|||.+.
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 345567877 567789999999765
No 324
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=66.97 E-value=5.8 Score=39.00 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=47.5
Q ss_pred CCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 78 ~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
.+++||+++++.-++...+.|+..|+.+..+++..+...+..+...+..+. .+++++|.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 338 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS--SRVLITTD 338 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC--CcEEEECC
Confidence 468999999999999999999999999999999999999999998888775 67777775
No 325
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=66.88 E-value=3.4 Score=36.72 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.|+-+++++|+|+|||....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 56778899999999996543
No 326
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=66.78 E-value=2.6 Score=37.51 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCchHHHH
Q 010563 53 GRDCFCLMPTGGGKSMC 69 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~ 69 (507)
|+-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45689999999999954
No 327
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=66.67 E-value=39 Score=25.43 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=75.7
Q ss_pred EEEEeecCChhhHHHHHHHhCCCCCeEEeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHH
Q 010563 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (507)
Q Consensus 196 ~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~ 275 (507)
++.+-.|-..+....+.+.. .|.-|.++.....++....+..+-....-.+++|..+.+.-..++-
T Consensus 3 ililintnndelikkikkev--------------enqgyqvrdvndsdelkkemkklaeeknfekiliisndkqllkeml 68 (134)
T 2lci_A 3 ILILINTNNDELIKKIKKEV--------------ENQGYQVRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEML 68 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHT--------------TTTTCEEEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHH--------------HccCeeeeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHH
Confidence 55666777777766665543 3445666666555555555666666666778999999999999999
Q ss_pred HHHHhCCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC
Q 010563 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (507)
Q Consensus 276 ~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (507)
+.+.+.|+.+..+--+.+..+-++.-+...+.-+.|--.|+
T Consensus 69 elisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 69 ELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp HHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 99999999999998888888766655555555555554443
No 328
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=66.45 E-value=3.7 Score=39.52 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.5
Q ss_pred CEEEEcCCCchHHHHH
Q 010563 55 DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv~apTG~GKTl~~ 70 (507)
-+++.+|||+|||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 329
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=66.44 E-value=3.9 Score=35.20 Aligned_cols=21 Identities=14% Similarity=-0.047 Sum_probs=17.0
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.++.+++.+++|+|||.....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 456799999999999976543
No 330
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=66.26 E-value=2.9 Score=40.71 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
+.+++.||+|+|||.....
T Consensus 71 ~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4699999999999976543
No 331
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=66.19 E-value=3.9 Score=40.01 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=18.3
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
++.++.|.+ +|+-+.||+|||.+.
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 445667876 567789999999765
No 332
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=66.10 E-value=3.1 Score=35.62 Aligned_cols=20 Identities=20% Similarity=0.003 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
+.-+++.+++|+|||.....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 44578999999999976543
No 333
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=66.05 E-value=15 Score=36.49 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=49.1
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecC--------CCCHHHHHHHHHHhhcCCCcccEEEEC
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS--------TQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (507)
.+.++||+++++.-+....+.|+..|+.+..+++ +.+...+..+...+..+. .+++++|
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~--~~vLv~T 426 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE--FNVLVAT 426 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS--CSEEEEC
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC--ceEEEEC
Confidence 5789999999999999999999999999999998 777777888888888775 7787777
No 334
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=65.72 E-value=89 Score=29.29 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 010563 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (507)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (507)
.+.....+.+.+.|....+................+.... ++-++..|.....+... .......+.+|++|...
T Consensus 80 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~----~~~~~~~iPvV~~~~~~ 153 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLR--CDAIMIYPRFLSVDEID----DIIDAHSQPIMVLNRRL 153 (338)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTT--CSEEEECCSSSCHHHHH----HHHHHCSSCEEEESSCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEeCCCCChHHHH----HHHHcCCCCEEEEcCCC
Confidence 4555555667778888777766555544444445544443 55555555322222122 22222236678887421
Q ss_pred c---ccccCCCCH-HHHHHHHHHHHhCCCCCEEEEeecCChhhHH-------HHHHHhCCCCCeEEeccCCCCceEEEEE
Q 010563 169 C---ISSWGHDFR-PSYRKLSSLRNYLPDVPILALTATAAPKVQK-------DVMESLCLQNPLVLKSSFNRPNLFYEVR 237 (507)
Q Consensus 169 ~---i~~~g~~fr-~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~-------~i~~~l~~~~~~~~~~~~~~~ni~~~v~ 237 (507)
. +..-+.|.. ..+.....+.. .....+.+++......... +..+..++... +... ..
T Consensus 154 ~~~~~~~V~~D~~~~~~~a~~~L~~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~---------~~~~--~~ 221 (338)
T 3dbi_A 154 RKNSSHSVWCDHKQTSFNAVAELIN-AGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALN---------EKLI--AN 221 (338)
T ss_dssp SSSGGGEECBCHHHHHHHHHHHHHH-TTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCC---------GGGE--EC
T ss_pred CCCCCCEEEEChHHHHHHHHHHHHH-CCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCC---------cceE--Ee
Confidence 1 111222333 33333444444 4567788887754432211 11222222211 0000 11
Q ss_pred eecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCc
Q 010563 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (507)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~ 284 (507)
.....+.-.+.+.+++...+ .+.-|||.+-..+.-+.+.|++.|+.
T Consensus 222 ~~~~~~~~~~~~~~ll~~~~-~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 222 GKWTPASGAEGVEMLLERGA-KFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp CCSSHHHHHHHHHHHHHTTC-CCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHcCCC-CCeEEEECChHHHHHHHHHHHHcCCC
Confidence 11222445566677776543 45678898888888888888887654
No 335
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=65.55 E-value=7.2 Score=40.11 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=47.6
Q ss_pred CccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccc-----cc-c-cCCC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-----MG-I-DRKD 326 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~-----~G-i-D~p~ 326 (507)
+.++||.++++.-+.++++.+++. ++.+..+||+.+...+...+. ...+|+|+|.-.- .| + +..+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 567999999999998888888764 899999999987655432221 1367999995422 22 3 5667
Q ss_pred ccEEEE
Q 010563 327 VRLVCH 332 (507)
Q Consensus 327 v~~VI~ 332 (507)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888874
No 336
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=65.51 E-value=4.3 Score=39.96 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=18.4
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~~ 71 (507)
++.++.|.+ +|+-+.||+|||.+..
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCceEEEEeecCCCCCcceecc
Confidence 344567877 5677899999997653
No 337
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=65.26 E-value=4.3 Score=40.08 Aligned_cols=24 Identities=33% Similarity=0.721 Sum_probs=18.5
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
++.++.|.+ +|+-+.||+|||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 445678876 567789999999775
No 338
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=65.23 E-value=5.5 Score=40.91 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=48.8
Q ss_pred CccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccc-----cc-c-cCCC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-----MG-I-DRKD 326 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~-----~G-i-D~p~ 326 (507)
+.++||.|+++.-+.++++.+++. ++.+..+||+.+...+...+. +..+|+|+|.-.- .+ + +..+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999999888888777664 899999999986554322221 1367999984421 12 2 4556
Q ss_pred ccEEE
Q 010563 327 VRLVC 331 (507)
Q Consensus 327 v~~VI 331 (507)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77777
No 339
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=65.18 E-value=3.6 Score=36.48 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=16.9
Q ss_pred HHHcCCCEEEEcCCCchHHHHHH
Q 010563 49 AVLSGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 49 ~i~~g~d~lv~apTG~GKTl~~~ 71 (507)
.+..|+-+.+.+|+|+|||...-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 45678888899999999996543
No 340
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=65.14 E-value=8.8 Score=41.86 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=46.9
Q ss_pred CccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc-----ccc-c-cCCC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~~G-i-D~p~ 326 (507)
+.++||.|+++.-+.++...+++. ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + ...+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 668999999999998888887764 899999999997655432221 247899999432 112 3 4556
Q ss_pred ccEEE
Q 010563 327 VRLVC 331 (507)
Q Consensus 327 v~~VI 331 (507)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 77877
No 341
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=65.03 E-value=44 Score=33.84 Aligned_cols=98 Identities=9% Similarity=-0.057 Sum_probs=67.3
Q ss_pred CCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccC
Q 010563 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (507)
Q Consensus 78 ~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~ 157 (507)
++..+|++..+.-+....+.|.+.+.++..+++..+...+..+...+..+. .+++++|+.++.+ =.+..
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~--~~vLv~T~~~~~~---------GiDip 415 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK--GIIIVASYGVFST---------GISVK 415 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC--SCEEEEEHHHHHH---------SCCCC
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC--CCEEEEEcChhhc---------ccccc
Confidence 455555555567777788888888889999999999999998888888775 6788777544322 22344
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC
Q 010563 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (507)
Q Consensus 158 ~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~ 192 (507)
.++++|+.... |+ ....++.+++.-+..+
T Consensus 416 ~v~~vi~~~~~----~s--~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 416 NLHHVVLAHGV----KS--KIIVLQTIGRVLRKHG 444 (510)
T ss_dssp SEEEEEESSCC----CS--CCHHHHHHHHHHTTTC
T ss_pred cCcEEEEeCCC----CC--HHHHHHHHhcccccCC
Confidence 47788876665 33 4445566776655444
No 342
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=64.97 E-value=4.8 Score=40.16 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=20.0
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 46 ~i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
.++.++.|.+ +|+-+.||+|||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5677788987 567779999999775
No 343
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=64.71 E-value=2.6 Score=36.29 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.|.-+.+++|+|+|||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 355578999999999975543
No 344
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=64.69 E-value=4.6 Score=37.30 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.4
Q ss_pred cCCCEEEEcCCCchHHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~lp 73 (507)
.|+.+++.+++|+|||....+-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4899999999999999765543
No 345
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=64.39 E-value=6.3 Score=38.89 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=25.7
Q ss_pred cCCCEEEEcCCCchHHHHHHHH---HhcCCCeEEEecChHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~lp---~l~~~~~~lvi~P~~~ 89 (507)
.+.++++.+|||+|||.....- ....+..++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4568999999999999643221 2234667777767644
No 346
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=64.25 E-value=4.5 Score=40.80 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.1
Q ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 47 IQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 47 i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
++.++.|.+ +|+-+.||+|||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 344567876 567789999999775
No 347
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=64.16 E-value=3 Score=41.07 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~ 70 (507)
.|.-+++.+|||+|||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999643
No 348
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=64.11 E-value=5.7 Score=34.39 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=14.6
Q ss_pred CEEEEcCCCchHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp 73 (507)
-+++.+|+|+|||...-.-
T Consensus 4 ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4678999999999765443
No 349
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=64.07 E-value=8.8 Score=48.14 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhcCCCCCcHHHH-HHHHH---HHcCCCEEEEcCCCchHHHHHHHH--HhcC----CCeEEEecCh
Q 010563 22 EKEALVKLLRWHFGHAQFRDKQL-DAIQA---VLSGRDCFCLMPTGGGKSMCYQIP--ALAK----PGIVLVVSPL 87 (507)
Q Consensus 22 l~~~l~~~l~~~fg~~~~r~~Q~-~~i~~---i~~g~d~lv~apTG~GKTl~~~lp--~l~~----~~~~lvi~P~ 87 (507)
+.+.+.+.+++ .|+. +.+.+. ++++. +...+.++++||||+|||.|+..- ++.. .....++-|-
T Consensus 873 l~~ai~~~~~~-~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPK 946 (3245)
T 3vkg_A 873 LRKKIQEIAKQ-RHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTT
T ss_pred HHHHHHHHHHH-cCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCC
Confidence 34555666665 4765 444443 34432 334567899999999999998643 3332 1234556664
No 350
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=64.02 E-value=5.1 Score=39.01 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=25.5
Q ss_pred HHHHHHcC-----CCEEEEcCCCchHHHH-HHHHHhc--C------CCeEEEec
Q 010563 46 AIQAVLSG-----RDCFCLMPTGGGKSMC-YQIPALA--K------PGIVLVVS 85 (507)
Q Consensus 46 ~i~~i~~g-----~d~lv~apTG~GKTl~-~~lp~l~--~------~~~~lvi~ 85 (507)
.++.++.| .-+.+.+|+|+|||.. .++.... . ++.+++|.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~ 172 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 172 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEE
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEe
Confidence 45566643 4578999999999944 4444443 1 25767775
No 351
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=63.92 E-value=3.9 Score=34.62 Aligned_cols=17 Identities=18% Similarity=-0.214 Sum_probs=13.8
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
-+++.||.|+|||....
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997654
No 352
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=63.91 E-value=5 Score=31.35 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=32.0
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCc-eeEecCCCCH
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 294 (507)
...+++|||.+-..+...+..|...|+. +..+.||+..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 3457999999988899999999999995 8888888743
No 353
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=63.62 E-value=4.4 Score=39.76 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=19.6
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHH
Q 010563 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 46 ~i~~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
.++.++.|.+ +|+-+.||+|||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4566778887 567789999999775
No 354
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=63.60 E-value=4.1 Score=35.38 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.+..+++.+++|+|||.....
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356789999999999976543
No 355
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=63.16 E-value=84 Score=28.11 Aligned_cols=178 Identities=14% Similarity=0.033 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc
Q 010563 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (507)
Q Consensus 90 L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (507)
+.....+.+++.|.....................+.... ++-++..|..-........+... .+.+|++|..-.
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~----~iPvV~~~~~~~ 93 (272)
T 3o74_A 20 IAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARR--CDALFVASCLPPEDDSYRELQDK----GLPVIAIDRRLD 93 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCCCSSCCHHHHHHHT----TCCEEEESSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEecCccccHHHHHHHHHc----CCCEEEEccCCC
Confidence 444455567778888887776665555555555555443 55555555432223333344332 367788875321
Q ss_pred ---ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhH----HHHHHHhCCCCCeEEeccCCCCceEEEEEeecch
Q 010563 170 ---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (507)
Q Consensus 170 ---i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~----~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~~~ 242 (507)
+...+.|....-..+...........+.+++........ .-+.+.+.-... ............
T Consensus 94 ~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~----------~~~~~~~~~~~~ 163 (272)
T 3o74_A 94 PAHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTG----------EVRRYQGEAFSR 163 (272)
T ss_dssp TTTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCS----------EEEEEEESSSSH
T ss_pred ccccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCC----------ChheeecCCCCH
Confidence 111222333333333333333455667777765543221 122222221111 011111112233
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCC
Q 010563 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI 283 (507)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~ 283 (507)
+...+.+.+++...+..+.-|||.+-..+..+...|++.|+
T Consensus 164 ~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 204 (272)
T 3o74_A 164 ECGQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPV 204 (272)
T ss_dssp HHHHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCC
Confidence 45566777788776523557888888888888899988774
No 356
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=63.15 E-value=4.3 Score=35.76 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.|.-+++.+|.|+|||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678899999999997554
No 357
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=63.09 E-value=17 Score=40.67 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=54.2
Q ss_pred CCCeEEEecChHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEEC
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (507)
.+.++||+++++.-+....+.|+. .|+++..+++..+...+..+...+..+...++++++|
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 577999999999999999999984 7999999999999999999999998886568888887
No 358
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=63.00 E-value=3.1 Score=36.00 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.|.-+++.+++|+|||.....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688999999999976543
No 359
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.00 E-value=9.1 Score=47.43 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcCCCCCcHHH-HHHH---HHHHcCCCEEEEcCCCchHHHHHHHHH
Q 010563 22 EKEALVKLLRWHFGHAQFRDKQ-LDAI---QAVLSGRDCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 22 l~~~l~~~l~~~fg~~~~r~~Q-~~~i---~~i~~g~d~lv~apTG~GKTl~~~lp~ 74 (507)
+.+.+.+.+.+ .|+. +.+.+ .+++ +.+...+.++++||||+|||.++...+
T Consensus 890 l~~~i~~~~~~-~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 890 IVQCLKDAGQR-SGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHHHHH-HTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 34556666665 4765 44444 3333 334456789999999999999886543
No 360
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=62.98 E-value=7.1 Score=44.16 Aligned_cols=72 Identities=8% Similarity=0.140 Sum_probs=54.8
Q ss_pred CccEEEEeccchhHHHHHHHHHhC----CC----ceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc-cccccc-CCCc
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG----GI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGID-RKDV 327 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~----g~----~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~~GiD-~p~v 327 (507)
+.++||.++|+.-+.++++.+++. ++ .+..+||+.+..++....+.+.+ .+|+|+|.- +..-+. +.++
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 457999999999999988888753 56 78999999999888777777766 899999963 111111 4467
Q ss_pred cEEE
Q 010563 328 RLVC 331 (507)
Q Consensus 328 ~~VI 331 (507)
++||
T Consensus 177 ~~lV 180 (1054)
T 1gku_B 177 DFIF 180 (1054)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 7777
No 361
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=62.95 E-value=4.6 Score=39.12 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=13.3
Q ss_pred CEEEEcCCCchHHHHH
Q 010563 55 DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv~apTG~GKTl~~ 70 (507)
-+++.+|||+|||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4678999999999654
No 362
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=62.89 E-value=8.2 Score=32.15 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.2
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCC-ceeEecCCCC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~ 293 (507)
...++||||.+-..+...+..|.+.|+ ++..|.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 346799999998888999999999999 5889999984
No 363
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=62.84 E-value=4.3 Score=35.07 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
+.-+++.+|+|+|||....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 364
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=62.74 E-value=11 Score=34.28 Aligned_cols=70 Identities=9% Similarity=-0.016 Sum_probs=47.3
Q ss_pred CccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccc------ccccCCCc
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG------MGIDRKDV 327 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~------~GiD~p~v 327 (507)
+.++||.+++++-+.++++.+++. ++.+..++|+.+....... + ....+|+|+|.-.- ..+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 357999999999999988887653 5678888998875543322 2 34578999995321 12345555
Q ss_pred cEEE
Q 010563 328 RLVC 331 (507)
Q Consensus 328 ~~VI 331 (507)
++||
T Consensus 176 ~~lV 179 (253)
T 1wrb_A 176 KYIV 179 (253)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 5555
No 365
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=62.74 E-value=9.5 Score=38.39 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.4
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
.+.+++.+|+|+|||.....
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 36799999999999976543
No 366
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=62.70 E-value=3.9 Score=40.03 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~ 70 (507)
.+.-+++.+|||+|||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3446889999999999643
No 367
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=62.65 E-value=3.5 Score=39.25 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
+..+++.+|+|+|||.....
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHH
Confidence 46799999999999976543
No 368
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=62.65 E-value=3.9 Score=39.79 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=18.0
Q ss_pred HHHHcCCC--EEEEcCCCchHHHHHH
Q 010563 48 QAVLSGRD--CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 48 ~~i~~g~d--~lv~apTG~GKTl~~~ 71 (507)
+.++.|.+ +++-+.||+|||.+..
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 78 QSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp GGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHhcCCceeEEEEECCCCCCCcEecc
Confidence 34457876 5677899999997754
No 369
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=62.51 E-value=4 Score=39.82 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEcCCCchHHHHHH
Q 010563 46 AIQAVLSGRD--CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 46 ~i~~i~~g~d--~lv~apTG~GKTl~~~ 71 (507)
.++.++.|.+ +++-+.||+|||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 3455567876 5677899999998764
No 370
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=62.48 E-value=4.4 Score=36.54 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=16.6
Q ss_pred HHcCCCEEEEcCCCchHHHHHH
Q 010563 50 VLSGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 50 i~~g~d~lv~apTG~GKTl~~~ 71 (507)
+-.|+-+.+.+|.|+|||...-
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 4467778899999999997543
No 371
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=62.26 E-value=4.4 Score=34.57 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.4
Q ss_pred EEEEcCCCchHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~ 71 (507)
+++.+++|+|||....
T Consensus 5 I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEecCCCCCHHHHHH
Confidence 6789999999997553
No 372
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=62.22 E-value=13 Score=27.45 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=29.3
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCc-eeEecCCCC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (507)
...+++|||.+-..+...+..|++.|+. +..+ ||+.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4567999999988899999999999986 5555 7754
No 373
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=62.12 E-value=4.2 Score=32.82 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=31.6
Q ss_pred CccEEEEeccchh--HHHHHHHHHhCCCceeEecCCCCH
Q 010563 258 DTCAIVYCLERTT--CDELSAYLSAGGISCAAYHAGLND 294 (507)
Q Consensus 258 ~~~~IVf~~s~~~--~~~l~~~L~~~g~~~~~~h~~l~~ 294 (507)
..+++|||.+-.. +...+..|++.|+.+..+.||+..
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 4579999998877 889999999999998888998743
No 374
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=62.02 E-value=6.4 Score=34.51 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=13.9
Q ss_pred CCEEEEcCCCchHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~ 70 (507)
+-++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34789999999999654
No 375
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=61.73 E-value=5.2 Score=36.89 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
+.+++.+|+|+|||....
T Consensus 45 ~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp SCCCCBCSSCSSHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 568999999999997653
No 376
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=60.95 E-value=4.6 Score=39.90 Aligned_cols=31 Identities=32% Similarity=0.557 Sum_probs=22.8
Q ss_pred cHHHHHHHHH--------HHcCCC--EEEEcCCCchHHHHH
Q 010563 40 RDKQLDAIQA--------VLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 40 r~~Q~~~i~~--------i~~g~d--~lv~apTG~GKTl~~ 70 (507)
..-|.+++.. ++.|.+ +|+-+.||+|||.+.
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3467777653 567876 567789999999765
No 377
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=60.58 E-value=4.2 Score=34.78 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
|.-+++.+|.|+|||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4567899999999997654
No 378
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=60.24 E-value=6.4 Score=32.42 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=32.6
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCC-ceeEecCCCCH
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLND 294 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~~ 294 (507)
...+++|||.+-..+...+..|++.|+ ++..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 456799999998899999999999999 58899999843
No 379
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=60.07 E-value=5.7 Score=33.07 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=31.9
Q ss_pred CccEEEEeccc--hhHHHHHHHHHhCCCceeEecCCCCH
Q 010563 258 DTCAIVYCLER--TTCDELSAYLSAGGISCAAYHAGLND 294 (507)
Q Consensus 258 ~~~~IVf~~s~--~~~~~l~~~L~~~g~~~~~~h~~l~~ 294 (507)
..+++|||.+- ..+...+..|+..|+++..+.||+..
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 45799999987 57889999999999999999998743
No 380
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=59.99 E-value=12 Score=37.33 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=45.5
Q ss_pred CCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcc
Q 010563 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (507)
Q Consensus 78 ~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe 139 (507)
.+.+||++|++.-++...+.|+..|+++..+++. .+..+...+..+. .+++++|..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~--~~vLVaT~v 226 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK--WDFVITTDI 226 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC--CSEEEECGG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC--CeEEEECch
Confidence 5789999999999999999999999999999975 3445666666664 788888753
No 381
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.84 E-value=6.6 Score=37.22 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=45.9
Q ss_pred CccEEEEeccchhHHHHHHHHHhC-----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCccc-------ccccCC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-------MGIDRK 325 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~~-------~GiD~p 325 (507)
...+||.++|++-+.+++..++.. ++.+..++++...... .....+|+|+|.--- ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999988887753 4567777776543221 134567999996421 245666
Q ss_pred CccEEEE
Q 010563 326 DVRLVCH 332 (507)
Q Consensus 326 ~v~~VI~ 332 (507)
+++++|.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 7777773
No 382
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=59.78 E-value=9.4 Score=29.91 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=32.3
Q ss_pred cCCccEEEEeccchhHHHHHHHHHhCCCceeEecCCCC
Q 010563 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (507)
Q Consensus 256 ~~~~~~IVf~~s~~~~~~l~~~L~~~g~~~~~~h~~l~ 293 (507)
....+++|||.+-..+...+..|++.|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 34567999999988899999999999986677889875
No 383
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=59.74 E-value=4.6 Score=40.87 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
+.+++.+|+|+|||....
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999997654
No 384
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=59.69 E-value=5 Score=38.17 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
..+++.+|+|+|||....
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999997654
No 385
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=59.52 E-value=7.4 Score=36.21 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=14.8
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~l 72 (507)
.+++.+|+|+|||.....
T Consensus 75 gvll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARA 92 (278)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCcChHHHHHHH
Confidence 489999999999965543
No 386
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=59.04 E-value=3.3 Score=37.69 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=44.9
Q ss_pred CccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc-----cc---cccCC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GM---GIDRK 325 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~~---GiD~p 325 (507)
+.++||.+++++-+.++++.+++. ++.+..++++.....+ ......+..+|+|+|.-- .. ++++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 347999999999999999988764 6666666664322111 112234567899998321 11 35566
Q ss_pred CccEEE
Q 010563 326 DVRLVC 331 (507)
Q Consensus 326 ~v~~VI 331 (507)
++++||
T Consensus 175 ~~~~lV 180 (245)
T 3dkp_A 175 SVEWLV 180 (245)
T ss_dssp TCCEEE
T ss_pred cCcEEE
Confidence 666665
No 387
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=58.62 E-value=4.7 Score=35.45 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.|.-+.+.+|.|+|||....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35567899999999997653
No 388
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=58.54 E-value=5 Score=39.83 Aligned_cols=15 Identities=33% Similarity=0.151 Sum_probs=12.6
Q ss_pred EEEEcCCCchHHHHH
Q 010563 56 CFCLMPTGGGKSMCY 70 (507)
Q Consensus 56 ~lv~apTG~GKTl~~ 70 (507)
+++.+|||+|||...
T Consensus 5 i~i~GptgsGKttla 19 (409)
T 3eph_A 5 IVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEECcchhhHHHHH
Confidence 578899999999654
No 389
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=58.48 E-value=7.6 Score=33.84 Aligned_cols=31 Identities=16% Similarity=-0.001 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHhcCCCeEEEecCh
Q 010563 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~ 87 (507)
++|.+++|||||.-..--+.. +..++++..-
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 589999999999544333333 4456666654
No 390
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=58.40 E-value=6.5 Score=30.69 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=32.4
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCc-eeEecCCCCH
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 294 (507)
...+++|||.+-..+...+..|.+.|+. +..+.||+..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 3567999999988899999999999985 8889998754
No 391
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=58.10 E-value=6.8 Score=38.31 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=16.0
Q ss_pred cCCC--EEEEcCCCchHHHHHH
Q 010563 52 SGRD--CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d--~lv~apTG~GKTl~~~ 71 (507)
.|.+ +|+-+.||+|||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4776 5888999999997754
No 392
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=58.10 E-value=70 Score=29.07 Aligned_cols=182 Identities=12% Similarity=0.049 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECccc-ccChhhHHHHHhhhccCCccEEEEeccc
Q 010563 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (507)
Q Consensus 90 L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~-~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (507)
+.....+.+++.|....+................+.... ++-++..|.. -........+. ...+.+|++|-..
T Consensus 23 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~----~~~iPvV~~~~~~ 96 (291)
T 3l49_A 23 AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQK--PDAIIEQLGNLDVLNPWLQKIN----DAGIPLFTVDTAT 96 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHC--CSEEEEESSCHHHHHHHHHHHH----HTTCCEEEESCCC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcC--CCEEEEeCCChhhhHHHHHHHH----HCCCcEEEecCCC
Confidence 444455556677877777766555444444444444333 4444443321 01111122222 1236677777532
Q ss_pred c--ccccCCCCHH-HHHHHHHHHHh-CCCCCEEEEeecCChhhHH----HHHHHhCCCCCeEEeccCCCCceEEEEEeec
Q 010563 169 C--ISSWGHDFRP-SYRKLSSLRNY-LPDVPILALTATAAPKVQK----DVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240 (507)
Q Consensus 169 ~--i~~~g~~fr~-~~~~l~~l~~~-~~~~~~i~lSAT~~~~~~~----~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~ 240 (507)
. +...+.|... .+.....+... .....+.+++......... -+.+.+.-.....+... ..+ .....
T Consensus 97 ~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~---~~~---~~~~~ 170 (291)
T 3l49_A 97 PHAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEP---ELR---DVIPN 170 (291)
T ss_dssp TTCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSS---CBC---CCSSS
T ss_pred CCcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEee---ecc---CCCCC
Confidence 1 1111222222 23333344442 4456677776554332211 12222221100111000 000 00011
Q ss_pred chhhHHHHHHHHHHhcCC--ccEEEEeccchhHHHHHHHHHhCCC
Q 010563 241 LLDDAYADLCSVLKANGD--TCAIVYCLERTTCDELSAYLSAGGI 283 (507)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~--~~~IVf~~s~~~~~~l~~~L~~~g~ 283 (507)
..+.....+.+++...+. ....|||.+-..+..+...|++.|+
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (291)
T 3l49_A 171 TIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGR 215 (291)
T ss_dssp HHHHHHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCC
Confidence 224456677778877651 4567899999999999999999886
No 393
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=57.93 E-value=13 Score=35.70 Aligned_cols=15 Identities=20% Similarity=-0.119 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHHH
Q 010563 56 CFCLMPTGGGKSMCY 70 (507)
Q Consensus 56 ~lv~apTG~GKTl~~ 70 (507)
+.+.||+|+|||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999654
No 394
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=57.89 E-value=4 Score=36.85 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=11.7
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.|+-+.+.+|+|+|||...-
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp CCCEEEEECSCC----CHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45667899999999996543
No 395
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=57.79 E-value=5.1 Score=35.70 Aligned_cols=55 Identities=11% Similarity=0.127 Sum_probs=38.9
Q ss_pred CccEEEEeccchhHHHHHHHHHhC--------CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~--------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~ 316 (507)
+.++||.++++.-+.++++.+++. ++.+..++|+.+...... . ..+..+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---K-LNVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---C-CSSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---H-cCCCCCEEEeCH
Confidence 457999999999999988877653 577888898875433211 1 124567888884
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=57.76 E-value=5.8 Score=38.22 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
..+++.+|+|+|||....+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5689999999999976543
No 397
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=57.64 E-value=5.8 Score=39.05 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=24.7
Q ss_pred hcCCCC---CcHHHHHHHH-------HHHcCCC--EEEEcCCCchHHHHH
Q 010563 33 HFGHAQ---FRDKQLDAIQ-------AVLSGRD--CFCLMPTGGGKSMCY 70 (507)
Q Consensus 33 ~fg~~~---~r~~Q~~~i~-------~i~~g~d--~lv~apTG~GKTl~~ 70 (507)
.|.|+. +..-|.++++ .++.|.+ +|+-+.||+|||.+.
T Consensus 84 ~F~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 84 DFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp EEECSEEECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred eeeecEEcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 355543 2335666554 3457876 567789999999765
No 398
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=57.56 E-value=4.9 Score=33.70 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=12.6
Q ss_pred EEEEcCCCchHHHHH
Q 010563 56 CFCLMPTGGGKSMCY 70 (507)
Q Consensus 56 ~lv~apTG~GKTl~~ 70 (507)
.++.+|+|+|||...
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999653
No 399
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=57.12 E-value=5.9 Score=34.78 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
.-+++.|+.|+|||....
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999997653
No 400
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=57.02 E-value=6.8 Score=33.44 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=15.0
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~l 72 (507)
.+++.+|+|+|||.....
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 588999999999976544
No 401
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=56.98 E-value=7 Score=31.74 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=32.5
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCc-eeEecCCCCH
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 294 (507)
...+++|||.+-..+...+..|.+.|+. +..|.||+..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 3568999999988899999999999985 8889999854
No 402
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=56.76 E-value=22 Score=38.72 Aligned_cols=73 Identities=7% Similarity=0.096 Sum_probs=52.7
Q ss_pred HhcCCccEEEEeccchhHHHHHHHHHh----CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc-cc---------
Q 010563 254 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG--------- 319 (507)
Q Consensus 254 ~~~~~~~~IVf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-~~--------- 319 (507)
....+..++|.++|+.-|.+.++.+.. .|+.+..+.||++..+|.... ..+|+++|+- +|
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 333455799999999998887777654 589999999999987766543 2689999963 21
Q ss_pred ---ccccCCCccEEEE
Q 010563 320 ---MGIDRKDVRLVCH 332 (507)
Q Consensus 320 ---~GiD~p~v~~VI~ 332 (507)
..++...++++|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 1255667777773
No 403
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=56.50 E-value=15 Score=31.51 Aligned_cols=14 Identities=14% Similarity=-0.000 Sum_probs=11.7
Q ss_pred EEEEcCCCchHHHH
Q 010563 56 CFCLMPTGGGKSMC 69 (507)
Q Consensus 56 ~lv~apTG~GKTl~ 69 (507)
+.+.++.|+|||..
T Consensus 7 i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 7 WQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56888999999953
No 404
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=56.22 E-value=19 Score=39.10 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=43.2
Q ss_pred CCccEEEEeccchhHHHHHHHHHh----CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (507)
.+..++|.++|+.-|.+.++.+.. .|+++..+.||++...|.... ..+|+|+|+.
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 445799999999988877776654 589999999999987665433 2789999964
No 405
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=56.20 E-value=18 Score=34.94 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=51.2
Q ss_pred CCccEEEEeccchhHHHHHHHHHh----CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc------cccccCCC
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKD 326 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~------~~GiD~p~ 326 (507)
.+.++||.|+++.-+.++++.+.+ .++.+..++|+.+..+....+. ..+|+|+|.-. ...++..+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999999998888765 3678899999998766554433 36799999432 12345567
Q ss_pred ccEEEE
Q 010563 327 VRLVCH 332 (507)
Q Consensus 327 v~~VI~ 332 (507)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777773
No 406
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=56.18 E-value=7.6 Score=39.08 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=40.5
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe 139 (507)
.++.+||++|++.-++...+.|+..|+++..+++. .+..+...+..+. .+++++|..
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g~--~~vLVaT~v 232 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQKK--PDFILATDI 232 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------CC--CSEEEESSS
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCCC--ceEEEECCh
Confidence 36789999999999999999999999999999873 3444555666664 788888853
No 407
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=56.13 E-value=7.8 Score=31.79 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=32.2
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCc-eeEecCCCCH
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 294 (507)
...+++|||.+-..+...+..|.+.|+. +..|.||+..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 3567999999988899999999999995 8889998743
No 408
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=56.12 E-value=7.7 Score=34.03 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=24.2
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecC
Q 010563 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (507)
Q Consensus 157 ~~l~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~ 203 (507)
...+++++||+..+..... .....|..+... ..++++-|.|.
T Consensus 104 ~~~dvlilDE~g~~~~~~~---~~~~~l~~~l~~--~~~~ilgti~v 145 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQ---LFIQAVRQTLST--PGTIILGTIPV 145 (189)
T ss_dssp SCCCCEEECCCSTTTTTCS---HHHHHHHHHHHC--SSCCEEEECCC
T ss_pred cCCCEEEEeCCCccccccH---HHHHHHHHHHhC--CCcEEEEEeec
Confidence 4468999999866533222 223455555553 34566556665
No 409
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=56.02 E-value=9.7 Score=40.06 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=20.4
Q ss_pred HHHHcCCCEEEEcCCCchHHHHHHHH
Q 010563 48 QAVLSGRDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 48 ~~i~~g~d~lv~apTG~GKTl~~~lp 73 (507)
..+..|+.+++.+|+|+|||..+..-
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar~i 80 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQAM 80 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHHHH
Confidence 34557889999999999999765443
No 410
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=55.91 E-value=6.7 Score=34.00 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=12.7
Q ss_pred EEEEcCCCchHHHHH
Q 010563 56 CFCLMPTGGGKSMCY 70 (507)
Q Consensus 56 ~lv~apTG~GKTl~~ 70 (507)
+.+.+|+|+|||...
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999654
No 411
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=55.75 E-value=6.5 Score=35.12 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
..+.+.+|+|+|||...-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578899999999976544
No 412
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=55.46 E-value=40 Score=33.36 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~l 72 (507)
+++++++|+|||.....
T Consensus 261 Iil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp EEEESCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999975543
No 413
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=55.28 E-value=5.3 Score=35.44 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCchHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~ 70 (507)
|.-+.+.+|+|+|||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778999999999643
No 414
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=55.26 E-value=6.8 Score=33.96 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=16.6
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.+.-+++.+++|+|||.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456688999999999976543
No 415
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=55.19 E-value=10 Score=40.37 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=46.9
Q ss_pred CCeEEEecChHHHHHHHHHHHHHc------CCceEEecCC--------CCHHHHHHHHHHhhcCCCcccEEEECc
Q 010563 78 PGIVLVVSPLIALMENQVIGLKEK------GIAGEFLSST--------QTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (507)
Q Consensus 78 ~~~~lvi~P~~~L~~q~~~~l~~~------gi~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~il~~tp 138 (507)
.+++||.++++..++...+.|+.. |+++..+++. .+..++..+...+..+. .+++++|.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~--~~VLVaT~ 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK--INLLIATT 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEEC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC--CcEEEEcc
Confidence 689999999999999999999886 8999999998 89999999999988875 66776664
No 416
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=55.19 E-value=6.8 Score=33.16 Aligned_cols=20 Identities=25% Similarity=0.094 Sum_probs=16.2
Q ss_pred CCEEEEcCCCchHHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~lp 73 (507)
+.+++.++.|+|||.....-
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46889999999999866543
No 417
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=55.09 E-value=5.2 Score=39.25 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.4
Q ss_pred CEEEEcCCCchHHHHH
Q 010563 55 DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv~apTG~GKTl~~ 70 (507)
-.++.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999655
No 418
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=55.00 E-value=5.9 Score=34.23 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
+.-+++.+++|+|||....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999997654
No 419
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=54.95 E-value=6.7 Score=32.16 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=32.3
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCCc-eeEecCCCCH
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~~ 294 (507)
...+++|||.+-..+..++..|++.|+. +..+.||+..
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 3467999999988888999999999985 8899998743
No 420
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=54.90 E-value=6.7 Score=34.76 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.0
Q ss_pred EEEEcCCCchHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~l 72 (507)
+++.||+|+|||.....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999976543
No 421
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=54.57 E-value=8.2 Score=37.03 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
...+++.||+|+|||.....
T Consensus 45 ~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 45699999999999976543
No 422
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=54.24 E-value=1.3e+02 Score=27.43 Aligned_cols=178 Identities=11% Similarity=0.085 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 010563 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (507)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (507)
.++....+.+.+.|....+..... ..........+.... ++-++..|..... .....+.. ..+.+|++|...
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~--vdGiIi~~~~~~~-~~~~~l~~----~~iPvV~~~~~~ 98 (294)
T 3qk7_A 27 EMISWIGIELGKRGLDLLLIPDEP-GEKYQSLIHLVETRR--VDALIVAHTQPED-FRLQYLQK----QNFPFLALGRSH 98 (294)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECT-TCCCHHHHHHHHHTC--CSEEEECSCCSSC-HHHHHHHH----TTCCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC-hhhHHHHHHHHHcCC--CCEEEEeCCCCCh-HHHHHHHh----CCCCEEEECCCC
Confidence 455555566777888777665543 111222333343332 4555555433222 23333332 237788888632
Q ss_pred c---ccccCCCCHH-HHHHHHHHHHhCCCCCEEEEeecCChhhH----HHHHHHhCCCCCeEEeccCCCCceEEEEEeec
Q 010563 169 C---ISSWGHDFRP-SYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240 (507)
Q Consensus 169 ~---i~~~g~~fr~-~~~~l~~l~~~~~~~~~i~lSAT~~~~~~----~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~ 240 (507)
. +..-+.|... .+.....|.. .....+.+++........ .-+.+.+.-... ... +... .....
T Consensus 99 ~~~~~~~V~~D~~~~~~~a~~~L~~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-----~~~-~~~~--~~~~~ 169 (294)
T 3qk7_A 99 LPKPYAWFDFDNHAGASLAVKRLLE-LGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGL-----MPL-AGYL--QKADP 169 (294)
T ss_dssp CSSCCEEEEECHHHHHHHHHHHHHH-TTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTC-----CCC-TTCE--EEECS
T ss_pred CCCCCCEEEcChHHHHHHHHHHHHH-CCCceEEEEeCCcccchHHHHHHHHHHHHHHCCC-----CCC-hhHe--ecCCC
Confidence 1 1111223333 3333333444 456778888776543221 111222211110 000 1111 11122
Q ss_pred chhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCc
Q 010563 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (507)
Q Consensus 241 ~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~ 284 (507)
..+..++.+.+++...+ .+.-|||.+-..+..+.+.|++.|+.
T Consensus 170 ~~~~~~~~~~~~l~~~~-~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 170 TRPGGYLAASRLLALEV-PPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp SHHHHHHHHHHHHHSSS-CCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHcCCC-CCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 23455667777777643 45678898888888888899887754
No 423
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=53.99 E-value=1.2e+02 Score=26.82 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHc--C-C--CEEEEcCCCchHHHHHHHHHhcCCCeEEEecChHHHHHHHHHHH
Q 010563 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLS--G-R--DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (507)
Q Consensus 24 ~~l~~~l~~~fg~~~~r~~Q~~~i~~i~~--g-~--d~lv~apTG~GKTl~~~lp~l~~~~~~lvi~P~~~L~~q~~~~l 98 (507)
.++...-.+ .|+....|.+.+.+..+.. + + .-++-..||+|-+..++...+...+.++.+=.....+..-.+.+
T Consensus 23 ~~~~~~a~~-~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~ 101 (221)
T 3dr5_A 23 ARAREDAAE-FGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALF 101 (221)
T ss_dssp HHHHHHHHH-TTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence 344444444 6888899999998887763 2 2 25668899999988777666655677777766666655555667
Q ss_pred HHcCCc---eEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEecccc
Q 010563 99 KEKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (507)
Q Consensus 99 ~~~gi~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (507)
+..|+. +.+..+... .....+. ...++++++....-..+.++..+.+.... =+++|+|++..
T Consensus 102 ~~~g~~~~~i~~~~gda~-----~~l~~~~--~~~fD~V~~d~~~~~~~~~l~~~~~~Lkp--GG~lv~dn~~~ 166 (221)
T 3dr5_A 102 REAGYSPSRVRFLLSRPL-----DVMSRLA--NDSYQLVFGQVSPMDLKALVDAAWPLLRR--GGALVLADALL 166 (221)
T ss_dssp HHTTCCGGGEEEECSCHH-----HHGGGSC--TTCEEEEEECCCTTTHHHHHHHHHHHEEE--EEEEEETTTTG
T ss_pred HHcCCCcCcEEEEEcCHH-----HHHHHhc--CCCcCeEEEcCcHHHHHHHHHHHHHHcCC--CcEEEEeCCCC
Confidence 777764 444443211 1111111 23478887765432223344444433332 26788888763
No 424
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=53.97 E-value=7 Score=33.75 Aligned_cols=18 Identities=17% Similarity=-0.018 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
.-+++.+++|+|||....
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999997553
No 425
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=53.97 E-value=54 Score=34.92 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=53.4
Q ss_pred HHHHhcCCCeEEEecChHHHHHHHHHHHHHcC------------------------------------CceEEecCCCCH
Q 010563 71 QIPALAKPGIVLVVSPLIALMENQVIGLKEKG------------------------------------IAGEFLSSTQTM 114 (507)
Q Consensus 71 ~lp~l~~~~~~lvi~P~~~L~~q~~~~l~~~g------------------------------------i~~~~~~~~~~~ 114 (507)
+.-.+..++.+||++|++.-++...+.|.+.. ..+..++++.+.
T Consensus 245 ~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 324 (715)
T 2va8_A 245 TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSK 324 (715)
T ss_dssp HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCH
Confidence 33445677899999999999888888887642 237889999999
Q ss_pred HHHHHHHHHhhcCCCcccEEEECcc
Q 010563 115 QVKTKIYEDLDSGKPSLRLLYVTPE 139 (507)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~il~~tpe 139 (507)
..+..+......+. .+++++|..
T Consensus 325 ~~r~~v~~~f~~g~--~~vlvaT~~ 347 (715)
T 2va8_A 325 ALRDLIEEGFRQRK--IKVIVATPT 347 (715)
T ss_dssp HHHHHHHHHHHTTC--SCEEEECGG
T ss_pred HHHHHHHHHHHcCC--CeEEEEChH
Confidence 99999998888875 888888864
No 426
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=53.92 E-value=7.1 Score=35.05 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
+.-+++.|++|+|||.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999976543
No 427
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=53.60 E-value=6.2 Score=34.85 Aligned_cols=19 Identities=21% Similarity=-0.143 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
|.-+.+.+|+|+|||...-
T Consensus 6 ~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4446789999999996543
No 428
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=53.53 E-value=11 Score=33.11 Aligned_cols=20 Identities=15% Similarity=-0.228 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
+.-+.+.+|+|+|||.....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44577899999999975443
No 429
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=53.47 E-value=7.3 Score=34.54 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=14.1
Q ss_pred EEEEcCCCchHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~l 72 (507)
+++.+|+|+|||.....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999976544
No 430
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=53.40 E-value=7.8 Score=33.24 Aligned_cols=17 Identities=24% Similarity=0.067 Sum_probs=13.6
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
-.++.+|+|+|||...-
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 35789999999997543
No 431
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=53.39 E-value=7.3 Score=33.52 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=13.3
Q ss_pred EEEEcCCCchHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~ 71 (507)
+++.++.|+|||....
T Consensus 4 I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999996543
No 432
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=53.05 E-value=9.9 Score=32.94 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.+.-+++.+++|+|||....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45668899999999997553
No 433
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=52.99 E-value=8 Score=32.72 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
+-+++.+++|+|||.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999976543
No 434
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=52.96 E-value=27 Score=30.42 Aligned_cols=73 Identities=8% Similarity=-0.012 Sum_probs=45.7
Q ss_pred CCCChHHHHHHHHHHhcCCCCC-------cHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHH---HHHh-cCCCeEEEe
Q 010563 18 KPLHEKEALVKLLRWHFGHAQF-------RDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQ---IPAL-AKPGIVLVV 84 (507)
Q Consensus 18 ~~~~l~~~l~~~l~~~fg~~~~-------r~~Q~~~i~~i~~g~--d~lv~apTG~GKTl~~~---lp~l-~~~~~~lvi 84 (507)
+++.+..-..+..+.. ....| .+-|..++..++... -.++.++-|++|+...+ +.+- ..+..+.++
T Consensus 8 dElsv~~la~~~~~~~-~v~~~~~~~~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vL 86 (189)
T 2l8b_A 8 DELSVRALSRDIMKQN-RVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQII 86 (189)
T ss_dssp SSHHHHHHHHHHHHHH-TCCCCGGGCCCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHhcC-CcccCCcCccccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 3344444444555553 23322 257899998887654 35678899999997632 2222 356789999
Q ss_pred cChHHHH
Q 010563 85 SPLIALM 91 (507)
Q Consensus 85 ~P~~~L~ 91 (507)
+|+..-.
T Consensus 87 Ap~~~s~ 93 (189)
T 2l8b_A 87 AADRRSQ 93 (189)
T ss_dssp CSTTHHH
T ss_pred cCchHHH
Confidence 9997654
No 435
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=52.93 E-value=7.7 Score=34.57 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~ 71 (507)
+++.+|+|+||+....
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999996543
No 436
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=52.87 E-value=12 Score=34.43 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=14.4
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
.-+++.|++|+|||....
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 347899999999997543
No 437
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=52.82 E-value=9.1 Score=32.85 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
.-+++.+++|+|||.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3578999999999976543
No 438
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=52.54 E-value=9.5 Score=36.45 Aligned_cols=32 Identities=13% Similarity=-0.032 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHH-hcCCCeEEEecCh
Q 010563 56 CFCLMPTGGGKSMCYQIPA-LAKPGIVLVVSPL 87 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp~-l~~~~~~lvi~P~ 87 (507)
+++.++.|+|||...-.-. +..+.++.||.|.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 5789999999997543322 2334455666554
No 439
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=52.44 E-value=8 Score=34.81 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
+-+++.+|+|+||+....
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 457889999999986543
No 440
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=52.39 E-value=6.5 Score=35.07 Aligned_cols=19 Identities=16% Similarity=0.016 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
|.-+.+.+|+|+|||....
T Consensus 25 G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567899999999996543
No 441
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=52.33 E-value=1.5e+02 Score=27.74 Aligned_cols=180 Identities=15% Similarity=0.120 Sum_probs=90.3
Q ss_pred HHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccccc
Q 010563 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (507)
Q Consensus 91 ~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH~i 170 (507)
.....+.+++.|....+................+......++-++..|..-.....+..+ ....+.+|++|-.-.-
T Consensus 23 ~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~----~~~giPvV~~~~~~~~ 98 (350)
T 3h75_A 23 SQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLS----QGSGIKLFIVNSPLTL 98 (350)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHH----TTSCCEEEEEESCCCT
T ss_pred HHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHH----HhCCCcEEEEcCCCCh
Confidence 333445566678888777666555544444444444211255555545321122222222 2234778888753221
Q ss_pred -----------------cccCCC-CHHHHHHHHHHHHhC-----CC-CCEEEEeecCChhhHH----HHHHHhCCCCCeE
Q 010563 171 -----------------SSWGHD-FRPSYRKLSSLRNYL-----PD-VPILALTATAAPKVQK----DVMESLCLQNPLV 222 (507)
Q Consensus 171 -----------------~~~g~~-fr~~~~~l~~l~~~~-----~~-~~~i~lSAT~~~~~~~----~i~~~l~~~~~~~ 222 (507)
...+.| +...+.....+.... .. ..+++++......... -+.+.+.-...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-- 176 (350)
T 3h75_A 99 DQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ-- 176 (350)
T ss_dssp TTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC--
Confidence 111222 223334444455554 13 5678887765432211 11222211110
Q ss_pred EeccCCCCceEEEEEeecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCc
Q 010563 223 LKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (507)
Q Consensus 223 ~~~~~~~~ni~~~v~~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~ 284 (507)
..+...+......+...+.+.++|...+ ....|||.+-..+..+.+.|++.|+.
T Consensus 177 -------~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 177 -------VHLRQLVYGEWNRERAYRQAQQLLKRYP-KTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp -------EEEEEEEECTTCHHHHHHHHHHHHHHCT-TEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred -------eEEEEEeeCCCcHHHHHHHHHHHHHhCC-CcCEEEECChHHHHHHHHHHHHcCCC
Confidence 0111111112233455667777887764 46788999989999999999998865
No 442
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=52.22 E-value=11 Score=30.82 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=31.3
Q ss_pred CccEEEEeccchhHHHHHHHHHhCCCc-eeEecCCCC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (507)
..+++|||.+=..+...+..|.+.|+. +..+.||+.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 457999999988889999999999995 888999984
No 443
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=51.77 E-value=5.8 Score=41.71 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.7
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
++++.||+|+|||....
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 89999999999997543
No 444
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=51.70 E-value=30 Score=37.84 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=44.8
Q ss_pred HhcCCccEEEEeccchhHHHHHHHHHh----CCCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc
Q 010563 254 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (507)
Q Consensus 254 ~~~~~~~~IVf~~s~~~~~~l~~~L~~----~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a 317 (507)
....+..++|.++|+.-|.+.++.+.. .|+++..+.|+++..+|.... ..+|+++|+.
T Consensus 148 ~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpg 209 (922)
T 1nkt_A 148 NALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNN 209 (922)
T ss_dssp HHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECch
Confidence 334456799999999988777776654 589999999999987766544 2689999963
No 445
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=51.65 E-value=7.5 Score=35.39 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.|+-+.+.+|+|+|||...-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~ 49 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLN 49 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 46667899999999996543
No 446
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=51.56 E-value=8.1 Score=33.24 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.4
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~l 72 (507)
-+++.+++|+|||.....
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999976543
No 447
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=51.42 E-value=9.3 Score=34.08 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
+..+++.+|+|+|||.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999976543
No 448
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=51.38 E-value=1.4e+02 Score=27.02 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCc
Q 010563 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (507)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~ 284 (507)
+...+.+.+++...+ .+.-|||.+-..+..+.+.|++.|+.
T Consensus 173 ~~~~~~~~~~l~~~~-~~~ai~~~~d~~A~g~~~al~~~g~~ 213 (288)
T 3gv0_A 173 EKIRDFGQRLMQSSD-RPDGIVSISGSSTIALVAGFEAAGVK 213 (288)
T ss_dssp HHHHHHHHHHTTSSS-CCSEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 344566666766543 35678888888888888999887654
No 449
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=51.37 E-value=8.4 Score=35.36 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCchHHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~lp 73 (507)
.|.-+.+.+|+|+|||...-+-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3556889999999999765443
No 450
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=51.16 E-value=7.3 Score=37.16 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.|+-+.+++|+|+|||...-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~l 99 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRL 99 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHH
Confidence 456788999999999975443
No 451
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=51.05 E-value=16 Score=38.91 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=46.4
Q ss_pred CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcc
Q 010563 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (507)
Q Consensus 77 ~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe 139 (507)
..+.+||++|++.-++...+.|+..|+++..+++. .+..+...+..+. .+++++|..
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~--~~VLVaTdv 465 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGD--WDFVITTDI 465 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCC--CSEEEECGG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCC--ceEEEECch
Confidence 46789999999999999999999999999999973 4555666776664 788888853
No 452
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=51.03 E-value=6.7 Score=34.45 Aligned_cols=20 Identities=25% Similarity=0.013 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.+.-+++.++.|+|||....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 34557899999999997543
No 453
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=50.74 E-value=8.6 Score=33.76 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=14.2
Q ss_pred EEEEcCCCchHHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~lp 73 (507)
+.+.+|.|+|||...-+-
T Consensus 5 i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999765443
No 454
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=50.61 E-value=11 Score=31.27 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=30.9
Q ss_pred CccEEEEeccchhHHHHHHHHHhCCCc-eeEecCCCC
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~g~~-~~~~h~~l~ 293 (507)
..+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 457999999988899999999999985 788888874
No 455
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=50.36 E-value=7.1 Score=33.66 Aligned_cols=16 Identities=13% Similarity=-0.004 Sum_probs=12.8
Q ss_pred CEEEEcCCCchHHHHH
Q 010563 55 DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv~apTG~GKTl~~ 70 (507)
-+.+++|+|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568899999999654
No 456
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=50.27 E-value=9.3 Score=34.00 Aligned_cols=20 Identities=20% Similarity=0.193 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
+..+++.+++|+|||.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34578999999999975543
No 457
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=50.11 E-value=9.2 Score=33.46 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.6
Q ss_pred CEEEEcCCCchHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~l 72 (507)
-+++.+++|+|||.....
T Consensus 22 ~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976543
No 458
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=50.10 E-value=14 Score=37.43 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~ 71 (507)
.++++.+|+|+|||....
T Consensus 202 ~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CEEEEESCTTTTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 579999999999997653
No 459
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=49.97 E-value=8.9 Score=33.55 Aligned_cols=19 Identities=26% Similarity=0.016 Sum_probs=14.8
Q ss_pred CEEEEcCCCchHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIP 73 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp 73 (507)
.+.+.++.|+|||...-.-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 3678999999999765443
No 460
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=49.84 E-value=9.7 Score=33.20 Aligned_cols=21 Identities=14% Similarity=-0.081 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.|.-+++.++.|+|||...-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 355688999999999975543
No 461
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=49.62 E-value=9.2 Score=34.81 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
+.-+++.+|.|+|||...-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997543
No 462
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=49.11 E-value=8.6 Score=32.89 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~ 70 (507)
.|.-+++.++.|+|||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3455789999999999754
No 463
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=49.01 E-value=64 Score=32.84 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=21.4
Q ss_pred HHHHHHH---cCCCEEEEcCCCchHHHHH
Q 010563 45 DAIQAVL---SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 45 ~~i~~i~---~g~d~lv~apTG~GKTl~~ 70 (507)
.+|+.+. +|+...+.++.|+|||...
T Consensus 151 kaID~l~PigrGQR~~Ifg~~g~GKT~l~ 179 (513)
T 3oaa_A 151 KAVDSMIPIGRGQRELIIGDRQTGKTALA 179 (513)
T ss_dssp HHHHHHSCCBTTCBCEEEESSSSSHHHHH
T ss_pred eeeccccccccCCEEEeecCCCCCcchHH
Confidence 4676665 7889999999999999764
No 464
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=49.01 E-value=10 Score=33.95 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.|+-+.+.+|.|+|||...-+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~ 54 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKT 54 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467788999999999975433
No 465
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=48.94 E-value=9.7 Score=33.09 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.2
Q ss_pred EEEEcCCCchHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~ 71 (507)
+++.+++|+|||....
T Consensus 3 I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 6789999999997543
No 466
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=48.88 E-value=14 Score=32.65 Aligned_cols=35 Identities=23% Similarity=0.050 Sum_probs=24.0
Q ss_pred CCCEEEEcCCCchHHHHHHHHH---hcCCCeEEEecCh
Q 010563 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~lp~---l~~~~~~lvi~P~ 87 (507)
|+=.++.+|.|+|||.-.+-.+ ...+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 5557889999999994322211 2356778888887
No 467
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=48.83 E-value=10 Score=37.35 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.|+-+++.+|+|+|||....
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35668899999999996543
No 468
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=48.79 E-value=9.1 Score=36.25 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
++-+.+.+|+|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3457889999999996543
No 469
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=48.53 E-value=27 Score=32.25 Aligned_cols=58 Identities=10% Similarity=0.002 Sum_probs=33.5
Q ss_pred HHHHHcC-----CCEEEEcCCCchH-HHHHHH--HHhcCCCeEEEecChHHHHHHHHHHHHHcCCce
Q 010563 47 IQAVLSG-----RDCFCLMPTGGGK-SMCYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (507)
Q Consensus 47 i~~i~~g-----~d~lv~apTG~GK-Tl~~~l--p~l~~~~~~lvi~P~~~L~~q~~~~l~~~gi~~ 105 (507)
++.++.| ..+++.+.+|+|| |+++++ ..+.++.++++++-. +-..+..+.++.+|+..
T Consensus 10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~-e~~~~l~~~~~~~G~dl 75 (260)
T 3bs4_A 10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS-YPLQLIIRILSRFGVDV 75 (260)
T ss_dssp HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHTTCCH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe-CCHHHHHHHHHHcCCCH
Confidence 4555544 4577775555555 455443 446677788887643 22245556677777653
No 470
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=48.37 E-value=7.4 Score=38.13 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.6
Q ss_pred EEEEcCCCchHHHHH
Q 010563 56 CFCLMPTGGGKSMCY 70 (507)
Q Consensus 56 ~lv~apTG~GKTl~~ 70 (507)
.++.+|||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999653
No 471
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=48.35 E-value=2.1e+02 Score=28.07 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=27.1
Q ss_pred cccEEEECcc------cccChhhHHHHHhhhccCCccEEEEecccc
Q 010563 130 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (507)
Q Consensus 130 ~~~il~~tpe------~~~t~~~~~~l~~~~~~~~l~~iViDEaH~ 169 (507)
...+++++|. .+.+++++..+.+......+ +||+||+|.
T Consensus 201 ~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~ 245 (453)
T 2cy8_A 201 DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGA-LFILDEVIS 245 (453)
T ss_dssp GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecCcc
Confidence 4678888875 23356677777665554443 799999997
No 472
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=48.31 E-value=10 Score=31.80 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~l 72 (507)
+++.++.|+|||.....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEESCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999976543
No 473
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=48.25 E-value=9.1 Score=34.85 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~ 70 (507)
.|+-+.+.+|+|+|||...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999644
No 474
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=48.07 E-value=1.5e+02 Score=26.50 Aligned_cols=177 Identities=13% Similarity=0.137 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 010563 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (507)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (507)
.+.....+.+.+.|.....................+.... ++-++..|... ......+.. ..+.+|++|..-
T Consensus 24 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~--~~~~~~l~~----~~iPvV~i~~~~ 95 (276)
T 3jy6_A 24 ELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRG--FDGLILQSFSN--PQTVQEILH----QQMPVVSVDREM 95 (276)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTT--CSEEEEESSCC--HHHHHHHHT----TSSCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEecCCc--HHHHHHHHH----CCCCEEEEeccc
Confidence 3444445556667888777766655554445555555443 44444443322 333333322 347788887532
Q ss_pred c---ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCC-hhh-HHHHHHHhCCCCCeEEeccCCCCceEEEEEeec-ch
Q 010563 169 C---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA-PKV-QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD-LL 242 (507)
Q Consensus 169 ~---i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~-~~~-~~~i~~~l~~~~~~~~~~~~~~~ni~~~v~~~~-~~ 242 (507)
. +..-+.|....-..+...........+.+++.... ... ..........-... +. +.+.... ..
T Consensus 96 ~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~--------~~--~~~~~~~~~~ 165 (276)
T 3jy6_A 96 DACPWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGILAAAQDV--------DV--LEVSESSYNH 165 (276)
T ss_dssp TTCSSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHTTCSEE--------EE--EEECSSSCCH
T ss_pred CCCCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHHHHHHhC--------Cc--EEEeccccCC
Confidence 1 11122333433344444444445667777777654 222 22222222111111 11 1111110 22
Q ss_pred hhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCc
Q 010563 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (507)
Q Consensus 243 ~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~ 284 (507)
.+....+.+++... ..+.-|||.+-..+..+.+.|++.|+.
T Consensus 166 ~~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 166 SEVHQRLTQLITQN-DQKTVAFALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp HHHHHHHHHHHHSS-SSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred cHHHHHHHHHHhcC-CCCcEEEEeCcHHHHHHHHHHHHcCCC
Confidence 33556666666543 456889999988898899999888764
No 475
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=47.72 E-value=71 Score=33.64 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=58.5
Q ss_pred CCchHHHH--HHHHHhc--CCCeEEEecChHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEEC
Q 010563 62 TGGGKSMC--YQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (507)
Q Consensus 62 TG~GKTl~--~~lp~l~--~~~~~lvi~P~~~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~t 137 (507)
..+||-.. .++..+. .+.++||++..+..+......|...|+....++++.+...+..+...+..+.....+++++
T Consensus 396 ~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~s 475 (644)
T 1z3i_X 396 QLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLS 475 (644)
T ss_dssp GGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred ccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 45788743 3333332 4679999999999888888888889999999999999999999999988775433344444
Q ss_pred cc
Q 010563 138 PE 139 (507)
Q Consensus 138 pe 139 (507)
..
T Consensus 476 t~ 477 (644)
T 1z3i_X 476 SK 477 (644)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 476
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=47.70 E-value=10 Score=33.53 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchHHHHH
Q 010563 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 41 ~~Q~~~i~~i~~g~d~lv~apTG~GKTl~~ 70 (507)
+.+... ..+..|.-+++.+++|+|||...
T Consensus 14 ~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 14 RSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp HHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred HHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 444444 22335666889999999999654
No 477
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=47.54 E-value=9.4 Score=32.89 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCchHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~ 71 (507)
|.-+++.++.|+|||....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4457899999999997543
No 478
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=47.40 E-value=11 Score=33.05 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=13.9
Q ss_pred CEEEEcCCCchHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~ 71 (507)
-+++.++.|+|||....
T Consensus 17 ~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997653
No 479
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=47.26 E-value=10 Score=32.92 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=15.4
Q ss_pred CEEEEcCCCchHHHHHHHHH
Q 010563 55 DCFCLMPTGGGKSMCYQIPA 74 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~lp~ 74 (507)
-+.+.+++|+|||....+-+
T Consensus 10 ~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36788999999997665443
No 480
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=47.22 E-value=11 Score=33.94 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
+..+++.+++|+|||.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999975543
No 481
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=47.14 E-value=1.6e+02 Score=26.50 Aligned_cols=177 Identities=8% Similarity=0.036 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEECcccccChhhHHHHHhhhccCCccEEEEeccc
Q 010563 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (507)
Q Consensus 89 ~L~~q~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~tpe~~~t~~~~~~l~~~~~~~~l~~iViDEaH 168 (507)
.+.....+.+.+.|.....................+.... ++-++..|.... ......+.. ..+.+|++|...
T Consensus 30 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--vdgiIi~~~~~~-~~~~~~l~~----~~iPvV~~~~~~ 102 (292)
T 3k4h_A 30 EVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQ--IGGIILLYSREN-DRIIQYLHE----QNFPFVLIGKPY 102 (292)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTC--CCEEEESCCBTT-CHHHHHHHH----TTCCEEEESCCS
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEEeCCCCC-hHHHHHHHH----CCCCEEEECCCC
Confidence 3444445566778887776655544443344444454443 555555543322 223333322 236788887542
Q ss_pred c----ccccCCCCHHHHHHHHHHHHhCCCCCEEEEeecCChhhHH----HH---HHHhCCCCCeEEeccCCCCceEEEEE
Q 010563 169 C----ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK----DV---MESLCLQNPLVLKSSFNRPNLFYEVR 237 (507)
Q Consensus 169 ~----i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~----~i---~~~l~~~~~~~~~~~~~~~ni~~~v~ 237 (507)
. +...+.|....-..............+.+++......... -+ .+..++... +.... .
T Consensus 103 ~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---------~~~~~--~ 171 (292)
T 3k4h_A 103 DRKDEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLP---------KEYIL--H 171 (292)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCC---------GGGEE--E
T ss_pred CCCCCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCC---------hheEE--e
Confidence 1 2222334343333343333334566788887765432211 11 112222110 01111 1
Q ss_pred eecchhhHHHHHHHHHHhcCCccEEEEeccchhHHHHHHHHHhCCCc
Q 010563 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (507)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~IVf~~s~~~~~~l~~~L~~~g~~ 284 (507)
.....+...+.+.+++...+ .+.-|||.+-..+..+.+.|++.|+.
T Consensus 172 ~~~~~~~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 172 FDFSRESGQQAVEELMGLQQ-PPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp CCSSHHHHHHHHHHHHTSSS-CCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHcCCC-CCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 11223455666777776643 45678888888888888999887654
No 482
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=47.10 E-value=10 Score=36.04 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=20.2
Q ss_pred CCCEEEEcCCCchHHHHHH-HHHhc--CCCeEEEec
Q 010563 53 GRDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~-lp~l~--~~~~~lvi~ 85 (507)
|.-+.+++|+|+|||...- +..+. ..+.+++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3457789999999996543 22222 345555543
No 483
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=46.97 E-value=9.7 Score=35.63 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.|.-+.+.+|+|+|||...-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~ 52 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQ 52 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46667899999999997543
No 484
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=46.90 E-value=11 Score=38.65 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~ 70 (507)
.+..+++.++||||||.+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 4568999999999999654
No 485
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=46.90 E-value=83 Score=28.96 Aligned_cols=80 Identities=9% Similarity=0.118 Sum_probs=58.5
Q ss_pred CCCchHHHHH--HHHHh-cCCCeEEEecChHHHHHHHHHHHHH-cCCceEEecCCCCHHHHHHHHHHhhcCCCcccEEEE
Q 010563 61 PTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136 (507)
Q Consensus 61 pTG~GKTl~~--~lp~l-~~~~~~lvi~P~~~L~~q~~~~l~~-~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 136 (507)
...+||-... ++..+ ..+.++||++.++..+....+.|.. +|+++..+++..+...+..+...+..+. ..+++++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~-~~~v~L~ 170 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNP-SVKFIVL 170 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCT-TCCEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCC-CCCEEEE
Confidence 3467887432 22222 3577999999999988888888887 5999999999999999999988888762 3555555
Q ss_pred Ccccc
Q 010563 137 TPELT 141 (507)
Q Consensus 137 tpe~~ 141 (507)
+....
T Consensus 171 st~~~ 175 (271)
T 1z5z_A 171 SVKAG 175 (271)
T ss_dssp ECCTT
T ss_pred ehhhh
Confidence 55443
No 486
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=46.83 E-value=8.7 Score=34.63 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~ 70 (507)
.|+-+.+.+|.|+|||...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp TTCEEEEEECTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566789999999999644
No 487
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=46.74 E-value=11 Score=33.51 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~l 72 (507)
+++.+|+|+|||.....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999975543
No 488
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=46.40 E-value=14 Score=45.79 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=17.7
Q ss_pred HHcCCCEEEEcCCCchHHHHH
Q 010563 50 VLSGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 50 i~~g~d~lv~apTG~GKTl~~ 70 (507)
+..++.++++||||+|||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 345789999999999999765
No 489
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=46.37 E-value=19 Score=38.22 Aligned_cols=70 Identities=9% Similarity=0.162 Sum_probs=48.9
Q ss_pred ccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCc-----cccc-c-cCCCc
Q 010563 259 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKDV 327 (507)
Q Consensus 259 ~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a-----~~~G-i-D~p~v 327 (507)
.++||.++++.-+.+.++.+++. ++.+..++|+.+...+...+ . ...+|+|+|.- +..| + +..++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 67999999999888888887764 78999999998653322221 1 24789999953 2222 3 56677
Q ss_pred cEEEE
Q 010563 328 RLVCH 332 (507)
Q Consensus 328 ~~VI~ 332 (507)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88874
No 490
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=46.31 E-value=9.5 Score=36.23 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=20.2
Q ss_pred CCEEEEcCCCchHHHHHH-HHHhc--CCCeEEEec
Q 010563 54 RDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~-lp~l~--~~~~~lvi~ 85 (507)
.-+.+++|+|+|||...- +..+. ..+.+++..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 346789999999996443 22222 356666654
No 491
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=46.28 E-value=87 Score=29.31 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=19.1
Q ss_pred CEEEEcCCCchHHHHHH-HHHh--cCCCeEEEec
Q 010563 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (507)
Q Consensus 55 d~lv~apTG~GKTl~~~-lp~l--~~~~~~lvi~ 85 (507)
-+.+.+++|+|||.... +... ..+++++++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36678999999996443 3222 2355666554
No 492
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=46.27 E-value=23 Score=32.81 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=33.3
Q ss_pred CCccEEEEeccchhHHHHHHHHHhCCC-ceeEecCCCCHH
Q 010563 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLNDK 295 (507)
Q Consensus 257 ~~~~~IVf~~s~~~~~~l~~~L~~~g~-~~~~~h~~l~~~ 295 (507)
...++||||.+-..+...+..|...|+ ++..|.||+..-
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 268 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHH
Confidence 456799999998889999999999999 489999999753
No 493
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=46.14 E-value=11 Score=34.28 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchHHHHHHH
Q 010563 53 GRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 53 g~d~lv~apTG~GKTl~~~l 72 (507)
+..+++.+|.|+|||.....
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34588999999999975543
No 494
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=46.06 E-value=12 Score=33.38 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=15.1
Q ss_pred CCEEEEcCCCchHHHHHHH
Q 010563 54 RDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 54 ~d~lv~apTG~GKTl~~~l 72 (507)
..+++.+++|+|||.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999976543
No 495
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=46.02 E-value=9.3 Score=33.81 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.0
Q ss_pred CEEEEcCCCchHHHHH
Q 010563 55 DCFCLMPTGGGKSMCY 70 (507)
Q Consensus 55 d~lv~apTG~GKTl~~ 70 (507)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3578899999999654
No 496
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=46.01 E-value=9.2 Score=35.32 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCchHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCY 70 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~ 70 (507)
.|.-+.+.+|.|+|||...
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666789999999999654
No 497
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=45.99 E-value=11 Score=33.64 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 010563 56 CFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 56 ~lv~apTG~GKTl~~~l 72 (507)
+++.+|+|+|||.....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999975543
No 498
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=45.92 E-value=10 Score=34.73 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCchHHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQI 72 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~l 72 (507)
.|+-+.+.+|.|+|||...-+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~ 54 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKL 54 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 466788999999999975433
No 499
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=45.92 E-value=32 Score=32.22 Aligned_cols=70 Identities=19% Similarity=0.120 Sum_probs=49.8
Q ss_pred CccEEEEeccchhHHHHHHHHHhC----CCceeEecCCCCHHHHHHHHHHHhcCCceEEEEeCcc-----c-ccccCCCc
Q 010563 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----G-MGIDRKDV 327 (507)
Q Consensus 258 ~~~~IVf~~s~~~~~~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~VLVaT~a~-----~-~GiD~p~v 327 (507)
+.++||.++++.-+.++++.+++. +..+..++|+.+...... .+. ..+|+|+|.-. . ..++..++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---RVR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---HHT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---hcC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 457999999999999999998753 578889999988765433 232 37799999532 1 12455667
Q ss_pred cEEEE
Q 010563 328 RLVCH 332 (507)
Q Consensus 328 ~~VI~ 332 (507)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77773
No 500
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=45.83 E-value=9.3 Score=34.85 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCchHHHHHH
Q 010563 52 SGRDCFCLMPTGGGKSMCYQ 71 (507)
Q Consensus 52 ~g~d~lv~apTG~GKTl~~~ 71 (507)
.|.-+.+.+|.|+|||...-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46667899999999997543
Done!