BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010564
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 136 bits (342), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 4/121 (3%)
Query: 6 FMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 65
+ +L LL +N+ CADC++KGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S LD
Sbjct: 14 YQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD 73
Query: 66 TWLPEQVAFIQSMGNEKANSYWEAELPPNYDR----VGIENFIRAKYEEKRWVSRDGQAN 121
W EQ+ +Q MGN KAN +EA LP + R +E FIR KYE+K+++ R N
Sbjct: 74 QWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSLDIN 133
Query: 122 S 122
+
Sbjct: 134 A 134
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 122 bits (305), Expect = 6e-28, Method: Composition-based stats.
Identities = 56/101 (55%), Positives = 73/101 (72%), Gaps = 4/101 (3%)
Query: 9 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWL 68
IL LL+ +N+ CADC+AKGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S LD W
Sbjct: 19 ILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWT 78
Query: 69 PEQVAFIQSMGNEKANSYWEAELPPNYDR----VGIENFIR 105
EQ+ +Q MGN KA +EA LP N+ R +E FIR
Sbjct: 79 AEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIR 119
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 8/106 (7%)
Query: 19 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSM 78
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V + +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 79 GNEKANSYWEAELP--------PNYDRVGIENFIRAKYEEKRWVSR 116
GN N +EA + P+ R E +I AKY EK+++++
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 8/106 (7%)
Query: 19 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSM 78
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V + +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 79 GNEKANSYWEAELP--------PNYDRVGIENFIRAKYEEKRWVSR 116
GN N +EA + P+ R E +I AKY EK+++++
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 68/106 (64%), Gaps = 8/106 (7%)
Query: 19 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSM 78
N +C DC+ P WAS+NLG+ +C+QCSGIHRSLGVH SKVRS TLD+W PE V + +
Sbjct: 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL 104
Query: 79 GNEKANSYWEAELP--------PNYDRVGIENFIRAKYEEKRWVSR 116
GN N +EA + P+ R E +I AKY EK+++++
Sbjct: 105 GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTK 150
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 9/118 (7%)
Query: 9 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWL 68
+LE LL+ P N CADC A P WAS LG+FIC+ CSGIHR++ +SKV+S LD W
Sbjct: 27 VLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWE 84
Query: 69 PEQVAFIQSMGNEKANSYWEAELPPNYDR-------VGIENFIRAKYEEKRWVSRDGQ 119
QV F+ S GN+ A + +E+++P Y R + E +IRAKYE + ++ + Q
Sbjct: 85 EAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEKQ 142
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 71/113 (62%), Gaps = 9/113 (7%)
Query: 9 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWL 68
+LE LL+ P N CADC A P WAS LG+FIC+ CSGIHR++ +SKV+S LD W
Sbjct: 25 VLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIP-QVSKVKSVRLDAWE 82
Query: 69 PEQVAFIQSMGNEKANSYWEAELPPNYDR-------VGIENFIRAKYEEKRWV 114
QV F+ S GN+ A + +E+++P Y R + E +IRAKYE + ++
Sbjct: 83 EAQVEFMASHGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFI 135
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Query: 17 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQ 76
P N +C DC A P W S NLG+ C+QCSG+HR LGV S+++S TLD P ++
Sbjct: 40 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 99
Query: 77 SMGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSR 116
+MGN N EA+LP + D ++I AKY E R+ R
Sbjct: 100 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 8 QILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 67
+I+ + ++ N C DC A P W S NLGI C++CSGIHR LGVH S+++S TLD
Sbjct: 6 EIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVL 65
Query: 68 LPEQVAFIQSMGNEKANSYWEAELP--------PNYDRVGIENFIRAKYEEKRWVSRDGQ 119
++ +++GN N E LP P D + +++I AKY E+R+ +R
Sbjct: 66 GTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRY-ARKKH 124
Query: 120 ANSPPR 125
A++ +
Sbjct: 125 ADTAAK 130
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Query: 17 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQ 76
P N +C DC A P W S NLG+ C+QCSG+HR LGV S+++S TLD P ++
Sbjct: 21 PGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLAL 80
Query: 77 SMGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSR 116
+MGN N EA+LP + D ++I AKY E R+ R
Sbjct: 81 NMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 128
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 89.7 bits (221), Expect = 3e-18, Method: Composition-based stats.
Identities = 46/94 (48%), Positives = 57/94 (60%), Gaps = 9/94 (9%)
Query: 19 NRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSM 78
N +C DC P W SVN GIF+C+ CSG+HRSLGVHIS VRS +D + EQ+ +I
Sbjct: 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKG 81
Query: 79 GNEKANSYWEAELPPNYDRVGIENFI-RAKYEEK 111
GN+K +Y E NY GI +FI KY K
Sbjct: 82 GNKKCQTYLE-----NY---GISDFIPERKYRTK 107
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 84.7 bits (208), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 6 FMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 65
F QI+ PENR C DC+++ P W S++ +FIC+ CS HR +GVHIS VRS+ LD
Sbjct: 26 FFQIVR---NRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLD 82
Query: 66 TWLPEQVAFIQSMGNEKANSYWEAELPPNY 95
+ P Q+ + GN +A +Y++ L N+
Sbjct: 83 KFTPIQLVRMDIGGNGRARNYFKQVLGVNF 112
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 82.0 bits (201), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 9 ILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-W 67
+ + L +P N+ C DC AK P WAS+ G+F+C+ CSG+HRSLGVH+S +RS LD+ W
Sbjct: 27 LFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNW 86
Query: 68 LPEQVAFIQSMGNEKANSYW 87
Q+ +Q GN A +++
Sbjct: 87 NWFQLRCMQVGGNANATAFF 106
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 81.3 bits (199), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 7 MQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 66
+ I + L +P N+ C DC AK P WAS+ G+F+C+ CSG HRSLGVH+S +RS LD+
Sbjct: 17 LTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDS 76
Query: 67 -WLPEQVAFIQSMGNEKANSYW 87
W Q+ +Q GN A+S++
Sbjct: 77 NWSWFQLRCMQVGGNASASSFF 98
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 7 MQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 66
+++L + LP NR+C DC +GP + ++ +G F+C CSG R L +V+S ++ T
Sbjct: 8 LKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTT 66
Query: 67 WLPEQVAFIQSMGNEKANSYW-------EAELPPNYDRVGIENFIRAKYEEKRWVSRDGQ 119
+ +++ F+Q GNE W + +P D ++ F++ KYE+KRW Q
Sbjct: 67 FTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPEQ 126
Query: 120 ANSPP 124
A S P
Sbjct: 127 AKSGP 131
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 15/135 (11%)
Query: 7 MQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 66
+++L + LP NR+C DC +GP + ++ +G F+C CSG R L +V+S ++ T
Sbjct: 13 LKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISMTT 71
Query: 67 WLPEQVAFIQSMGNEKANSYW-------EAELPPNYDRVGIENFIRAKYEEKRWVSRDGQ 119
+ +++ F+Q GNE W + +P D ++ F++ KYE+KRW
Sbjct: 72 FTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWY----- 126
Query: 120 ANSPPRGLEEKASIH 134
PP + AS+H
Sbjct: 127 --VPPEQAKVVASVH 139
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 18 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 77
EN C +C A P+W SV GI+IC++CSG HR LGVH+S VRS T+D W ++ +++
Sbjct: 36 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA 95
Query: 78 MGNEKANSYWEAELPPNYD 96
GN K + E++ +YD
Sbjct: 96 GGNAKFREFLESQ--EDYD 112
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 18 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 77
EN C +C A P+W SV GI+IC++CSG HR LGVH+S VRS T+D W ++ +++
Sbjct: 37 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA 96
Query: 78 MGNEKANSYWEAELPPNYD 96
GN K + E++ +YD
Sbjct: 97 GGNAKFREFLESQ--EDYD 113
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 75 IQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPP 124
+ + ++ YWE E+ P Y RV F+ + EKRW++ PP
Sbjct: 56 MTKLATDELFDYWECEVTPPYRRVKY-GFLLQQGHEKRWMTEYDFLTEPP 104
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 75 IQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWV--------SRDGQANSPPRG 126
++ MG EK + YW AE Y ++ A+Y +++ +RDGQ+ R
Sbjct: 423 LREMGREKCHQYWPAERSARYQYFVVDPM--AEYNMPQYILREFKVTDARDGQS----RT 476
Query: 127 LEEKASIHWQRPGE-KSGHGYTD 148
+ + W G KSG G+ D
Sbjct: 477 VRQFQFTDWPEQGAPKSGEGFID 499
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 75 IQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWV--------SRDGQANSPPRG 126
++ MG EK + YW AE Y ++ A+Y +++ +RDGQ+ R
Sbjct: 421 LREMGREKCHQYWPAERSARYQYFVVDPM--AEYNMPQYILREFKVTDARDGQS----RT 474
Query: 127 LEEKASIHWQRPGE-KSGHGYTD 148
+ + W G KSG G+ D
Sbjct: 475 VRQFQFTDWPEQGVPKSGEGFID 497
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 75 IQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWV--------SRDGQANSPPRG 126
++ MG EK + YW AE Y ++ A+Y +++ +RDGQ+ R
Sbjct: 409 LREMGREKCHQYWPAERSARYQYFVVDPM--AEYNMPQYILREFKVTDARDGQS----RT 462
Query: 127 LEEKASIHWQRPGE-KSGHGYTD 148
+ + W G K+G G+ D
Sbjct: 463 IRQFQFTDWPEQGVPKTGEGFID 485
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,999,489
Number of Sequences: 62578
Number of extensions: 531448
Number of successful extensions: 826
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 25
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)