Query 010564
Match_columns 507
No_of_seqs 163 out of 1170
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 09:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 7.7E-40 2.6E-44 294.5 6.5 115 4-118 12-130 (134)
2 2crr_A Stromal membrane-associ 100.0 1.5E-39 5.1E-44 294.8 7.3 116 4-119 14-133 (141)
3 2olm_A Nucleoporin-like protei 100.0 6.6E-38 2.2E-42 283.8 9.8 115 3-118 9-130 (140)
4 3jue_A Arfgap with coiled-coil 100.0 5.3E-35 1.8E-39 294.5 7.9 115 4-118 30-152 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 7.1E-34 2.4E-38 289.9 9.5 115 3-118 18-139 (386)
6 2owa_A Arfgap-like finger doma 100.0 4.8E-34 1.6E-38 258.2 6.9 109 4-112 21-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 1.3E-33 4.3E-38 258.4 5.8 92 3-94 13-105 (149)
8 3dwd_A ADP-ribosylation factor 100.0 5.8E-33 2E-37 253.4 9.5 115 1-115 20-145 (147)
9 2p57_A GTPase-activating prote 100.0 2.3E-31 7.9E-36 242.3 7.4 92 2-93 20-112 (144)
10 3sub_A ADP-ribosylation factor 100.0 3.7E-31 1.3E-35 244.9 6.4 109 4-112 6-116 (163)
11 2b0o_E UPLC1; arfgap, structur 100.0 2.2E-30 7.5E-35 250.9 10.0 113 4-116 27-147 (301)
12 3lvq_E ARF-GAP with SH3 domain 100.0 1E-30 3.5E-35 267.9 7.0 114 4-117 8-129 (497)
13 1dcq_A PYK2-associated protein 100.0 2.1E-30 7.3E-35 248.0 8.5 115 3-117 1-123 (278)
14 3o47_A ADP-ribosylation factor 99.9 1.2E-28 4.1E-33 243.5 7.5 92 1-92 19-110 (329)
15 1u5k_A Hypothetical protein; O 84.5 0.57 2E-05 44.3 3.3 76 17-109 148-223 (244)
16 1gnf_A Transcription factor GA 68.7 1.5 5.1E-05 33.0 0.9 38 17-54 2-40 (46)
17 3dfx_A Trans-acting T-cell-spe 63.2 2.5 8.5E-05 33.7 1.3 39 16-54 4-43 (63)
18 2vut_I AREA, nitrogen regulato 59.5 2.9 0.0001 30.9 1.0 35 20-54 2-37 (43)
19 4gat_A Nitrogen regulatory pro 57.9 3.3 0.00011 33.2 1.1 38 17-54 7-45 (66)
20 4hc9_A Trans-acting T-cell-spe 51.7 4.1 0.00014 35.6 0.8 36 19-54 5-41 (115)
21 2kae_A GATA-type transcription 41.5 4.5 0.00015 32.9 -0.5 36 18-54 7-45 (71)
22 1d4u_A Nucleotide excision rep 31.8 5.2 0.00018 35.1 -1.7 32 18-49 4-36 (111)
23 1tjl_A DNAK suppressor protein 31.0 14 0.00047 33.6 0.8 34 17-50 109-143 (151)
24 3g9m_A Glucocorticoid receptor 28.6 11 0.00039 31.2 -0.1 30 18-50 1-30 (90)
25 2kgo_A Uncharacterized protein 28.6 14 0.00048 32.2 0.4 32 19-50 56-88 (108)
26 3dzy_D Peroxisome proliferator 28.3 17 0.00057 37.4 1.0 31 17-50 48-78 (419)
27 1ffk_W Ribosomal protein L37AE 27.2 15 0.00052 30.0 0.4 40 6-47 13-53 (73)
28 4hc9_A Trans-acting T-cell-spe 26.2 24 0.00082 30.7 1.5 38 17-54 57-95 (115)
29 2han_B Ecdysone receptor; tran 23.4 23 0.00079 31.0 0.8 30 18-50 7-36 (119)
30 2ebl_A COUP transcription fact 22.6 23 0.00078 29.6 0.6 31 17-50 5-35 (89)
31 1r4i_A Androgen receptor; AR, 21.6 20 0.00069 30.8 0.1 32 16-50 4-35 (105)
32 1hcq_A Protein (estrogen recep 21.2 25 0.00086 29.0 0.6 30 18-50 3-32 (84)
33 2nll_B Protein (thyroid hormon 20.9 24 0.00081 30.2 0.4 28 20-50 2-29 (103)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=7.7e-40 Score=294.50 Aligned_cols=115 Identities=50% Similarity=0.963 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhHH
Q 010564 4 YVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKA 83 (507)
Q Consensus 4 ~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~ra 83 (507)
++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||+|++++|++|+.+||.++
T Consensus 12 e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~a 91 (134)
T 2iqj_A 12 DRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKA 91 (134)
T ss_dssp -CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCC----hhhHHHHHHHHhhhcccccCCC
Q 010564 84 NSYWEAELPPNYD----RVGIENFIRAKYEEKRWVSRDG 118 (507)
Q Consensus 84 N~iwEa~lPps~d----~~~re~FIraKY~eKrF~~~~g 118 (507)
|.|||+++|+.+. ...+|+|||+||++++|+.+..
T Consensus 92 n~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 130 (134)
T 2iqj_A 92 NRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL 130 (134)
T ss_dssp HHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred HHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence 9999999986542 3468999999999999997644
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=294.79 Aligned_cols=116 Identities=51% Similarity=0.956 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhHH
Q 010564 4 YVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKA 83 (507)
Q Consensus 4 ~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~ra 83 (507)
++++++|+.|++.|+|+.|||||+++|+|||+|||||||++|+||||.||+|||+||||+||+|++++|++|+.+||.++
T Consensus 14 e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~a 93 (141)
T 2crr_A 14 EQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKA 93 (141)
T ss_dssp TCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCC----hhhHHHHHHHHhhhcccccCCCC
Q 010564 84 NSYWEAELPPNYD----RVGIENFIRAKYEEKRWVSRDGQ 119 (507)
Q Consensus 84 N~iwEa~lPps~d----~~~re~FIraKY~eKrF~~~~g~ 119 (507)
|+|||+++|+.+. ...+|+|||+||++++|+.+...
T Consensus 94 n~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~~ 133 (141)
T 2crr_A 94 RLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAI 133 (141)
T ss_dssp HHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGGG
T ss_pred HHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCcc
Confidence 9999999986542 34689999999999999976543
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=6.6e-38 Score=283.76 Aligned_cols=115 Identities=30% Similarity=0.671 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhH
Q 010564 3 FYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEK 82 (507)
Q Consensus 3 ~~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~r 82 (507)
.++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+| |+||||+||+|++++|++|+.+||.+
T Consensus 9 ~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~ 87 (140)
T 2olm_A 9 EEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEV 87 (140)
T ss_dssp HHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHH
Confidence 46899999999999999999999999999999999999999999999999996 99999999999999999999999999
Q ss_pred HHHHHhhcCCC-------CCChhhHHHHHHHHhhhcccccCCC
Q 010564 83 ANSYWEAELPP-------NYDRVGIENFIRAKYEEKRWVSRDG 118 (507)
Q Consensus 83 aN~iwEa~lPp-------s~d~~~re~FIraKY~eKrF~~~~g 118 (507)
+|.|||+++++ ..|...+++|||+||++++|+.+..
T Consensus 88 an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~~ 130 (140)
T 2olm_A 88 CKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPE 130 (140)
T ss_dssp HHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred HHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCcc
Confidence 99999998753 2244578999999999999997643
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=5.3e-35 Score=294.50 Aligned_cols=115 Identities=43% Similarity=0.769 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhHH
Q 010564 4 YVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKA 83 (507)
Q Consensus 4 ~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~ra 83 (507)
++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||+|++++|++|+.+||.++
T Consensus 30 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~ 109 (368)
T 3jue_A 30 GGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVII 109 (368)
T ss_dssp --CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--------CChhhHHHHHHHHhhhcccccCCC
Q 010564 84 NSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRDG 118 (507)
Q Consensus 84 N~iwEa~lPps--------~d~~~re~FIraKY~eKrF~~~~g 118 (507)
|.|||+++|+. .++..+++|||+||++|+|+.+..
T Consensus 110 n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 110 NQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp HHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred HHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 99999998642 235679999999999999997654
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=7.1e-34 Score=289.85 Aligned_cols=115 Identities=43% Similarity=0.784 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhH
Q 010564 3 FYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEK 82 (507)
Q Consensus 3 ~~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~r 82 (507)
-++++++|+.|++.|+|+.|||||+++|+|||+|||||||++|+||||+| +|||+||||+||+|++++|++|+.+||.+
T Consensus 18 ~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~ 96 (386)
T 3lju_X 18 GKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDA 96 (386)
T ss_dssp HHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHH
T ss_pred hhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchH
Confidence 36899999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHhhcCCCCC------C-hhhHHHHHHHHhhhcccccCCC
Q 010564 83 ANSYWEAELPPNY------D-RVGIENFIRAKYEEKRWVSRDG 118 (507)
Q Consensus 83 aN~iwEa~lPps~------d-~~~re~FIraKY~eKrF~~~~g 118 (507)
+|.|||+++|+.. | ...+|+|||+||++++|+..+.
T Consensus 97 ~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 97 ARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp HHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred HHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 9999999987532 2 3468999999999999998765
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=4.8e-34 Score=258.21 Aligned_cols=109 Identities=32% Similarity=0.599 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhHH
Q 010564 4 YVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKA 83 (507)
Q Consensus 4 ~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~ra 83 (507)
+..+++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||+|++++|++|+.+||.++
T Consensus 21 ~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~a 100 (138)
T 2owa_A 21 KLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRA 100 (138)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC--CCC-ChhhHHHHHHHHhhhcc
Q 010564 84 NSYWEAELP--PNY-DRVGIENFIRAKYEEKR 112 (507)
Q Consensus 84 N~iwEa~lP--ps~-d~~~re~FIraKY~eKr 112 (507)
|+|||++.. +.. .+.+.+.||..||+++.
T Consensus 101 n~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 101 RNYFKQVLGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHHTCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 999998543 222 35678999999999874
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.98 E-value=1.3e-33 Score=258.36 Aligned_cols=92 Identities=41% Similarity=0.768 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCC-CCHHHHHHHHhhchh
Q 010564 3 FYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAFIQSMGNE 81 (507)
Q Consensus 3 ~~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~-Wt~eEV~~Mq~gGN~ 81 (507)
-++++++|+.|++.|+|++|+|||+++|+|||+|||||||++|+||||.||+|||+||||+||+ |++++|+.|+.+||.
T Consensus 13 k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~ 92 (149)
T 2crw_A 13 KQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNA 92 (149)
T ss_dssp HHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhH
Confidence 3688999999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhcCCCC
Q 010564 82 KANSYWEAELPPN 94 (507)
Q Consensus 82 raN~iwEa~lPps 94 (507)
++|+|||+++...
T Consensus 93 ~an~~~e~~~~~~ 105 (149)
T 2crw_A 93 SASSFFHQHGCST 105 (149)
T ss_dssp HHHHHHHHHCCCC
T ss_pred HHHHHHHhcCCCC
Confidence 9999999998764
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.98 E-value=5.8e-33 Score=253.45 Aligned_cols=115 Identities=34% Similarity=0.601 Sum_probs=94.4
Q ss_pred CChHHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhch
Q 010564 1 MNFYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGN 80 (507)
Q Consensus 1 m~~~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN 80 (507)
|-.++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||+|++++|+.|+.+||
T Consensus 20 m~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN 99 (147)
T 3dwd_A 20 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 99 (147)
T ss_dssp --CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCH
T ss_pred CCCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhh
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCC--CCCCh-h--------hHHHHHHHHhhhccccc
Q 010564 81 EKANSYWEAELP--PNYDR-V--------GIENFIRAKYEEKRWVS 115 (507)
Q Consensus 81 ~raN~iwEa~lP--ps~d~-~--------~re~FIraKY~eKrF~~ 115 (507)
.++|+|||++.. +..+. . ..++-|+++++.|.|..
T Consensus 100 ~~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 100 AKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 999999998742 22221 1 24666777777777764
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.3e-31 Score=242.31 Aligned_cols=92 Identities=40% Similarity=0.780 Sum_probs=86.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCC-CCHHHHHHHHhhch
Q 010564 2 NFYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAFIQSMGN 80 (507)
Q Consensus 2 ~~~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~-Wt~eEV~~Mq~gGN 80 (507)
+-++.+++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||.||+|||+||||+||+ |++++|+.|+.+||
T Consensus 20 ~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN 99 (144)
T 2p57_A 20 NKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGN 99 (144)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCH
Confidence 34678889999999999999999999999999999999999999999999999999999999996 99999999999999
Q ss_pred hHHHHHHhhcCCC
Q 010564 81 EKANSYWEAELPP 93 (507)
Q Consensus 81 ~raN~iwEa~lPp 93 (507)
.++|+|||++.-.
T Consensus 100 ~~an~~~e~~g~~ 112 (144)
T 2p57_A 100 ANATAFFRQHGCT 112 (144)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999988543
No 10
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.96 E-value=3.7e-31 Score=244.95 Aligned_cols=109 Identities=37% Similarity=0.643 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcC-CCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhH
Q 010564 4 YVFMQILEGLLKL-PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEK 82 (507)
Q Consensus 4 ~k~ekiL~~Llk~-PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~r 82 (507)
+.++++|+.|++. |+|+.|+|||+++|+|||++||||||++|+||||.||+|||+||||+||.|++++|++|+.+||.+
T Consensus 6 a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~ 85 (163)
T 3sub_A 6 AAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKK 85 (163)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHH
Confidence 5678999999985 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCChh-hHHHHHHHHhhhcc
Q 010564 83 ANSYWEAELPPNYDRV-GIENFIRAKYEEKR 112 (507)
Q Consensus 83 aN~iwEa~lPps~d~~-~re~FIraKY~eKr 112 (507)
+|+|||.+........ +...-.-.+|+++.
T Consensus 86 an~~~e~~g~~~~~p~~KY~s~aA~~Yr~~L 116 (163)
T 3sub_A 86 CQTYLENYGISDFIPERKYRTKAADHYRKIL 116 (163)
T ss_dssp HHHHHHHTTCTTSCHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccChhhcCCCHHHHHHHHHH
Confidence 9999999876554421 22223444555543
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.96 E-value=2.2e-30 Score=250.94 Aligned_cols=113 Identities=39% Similarity=0.703 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhHH
Q 010564 4 YVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKA 83 (507)
Q Consensus 4 ~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~ra 83 (507)
+..+++|+.|++.|+|+.|+|||+++|+|+|+|||||+|++|+||||.||+|||+|||++||.|+.++|.+|..+||.++
T Consensus 27 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~ 106 (301)
T 2b0o_E 27 DLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSF 106 (301)
T ss_dssp CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--------CChhhHHHHHHHHhhhcccccC
Q 010564 84 NSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSR 116 (507)
Q Consensus 84 N~iwEa~lPps--------~d~~~re~FIraKY~eKrF~~~ 116 (507)
|++||+.+|.. .+...+++||+.||++++|..+
T Consensus 107 n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 107 NEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999987642 3456799999999999998764
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=1e-30 Score=267.86 Aligned_cols=114 Identities=39% Similarity=0.687 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhHH
Q 010564 4 YVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKA 83 (507)
Q Consensus 4 ~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~ra 83 (507)
+.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++|+||||+||+|||+||||+||.|+.+++++|+.+||..+
T Consensus 8 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~a 87 (497)
T 3lvq_E 8 DLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSF 87 (497)
T ss_dssp CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHH
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--------CChhhHHHHHHHHhhhcccccCC
Q 010564 84 NSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRD 117 (507)
Q Consensus 84 N~iwEa~lPps--------~d~~~re~FIraKY~eKrF~~~~ 117 (507)
|.+||+.+|.. .+...+++||++||++++|..+.
T Consensus 88 n~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 88 NEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 99999988632 24567999999999999998764
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.96 E-value=2.1e-30 Score=247.95 Aligned_cols=115 Identities=37% Similarity=0.709 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhH
Q 010564 3 FYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEK 82 (507)
Q Consensus 3 ~~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~r 82 (507)
++.++++|+.|++.|+|+.|+|||+.+|.|+|+|||+|||++|+||||.||+|||+|||++||.|+.+++..|..+||..
T Consensus 1 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~ 80 (278)
T 1dcq_A 1 MELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAG 80 (278)
T ss_dssp --CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHH
T ss_pred CchHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCC--------CChhhHHHHHHHHhhhcccccCC
Q 010564 83 ANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRD 117 (507)
Q Consensus 83 aN~iwEa~lPps--------~d~~~re~FIraKY~eKrF~~~~ 117 (507)
+|+|||+.+|.. .+...+++||+.||+.++|..+.
T Consensus 81 ~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 81 FNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 999999987632 34567999999999999998653
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=243.53 Aligned_cols=92 Identities=38% Similarity=0.685 Sum_probs=86.1
Q ss_pred CChHHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhch
Q 010564 1 MNFYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGN 80 (507)
Q Consensus 1 m~~~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN 80 (507)
|-+++++++|+.|++.|+|+.|||||+++|.|||+|||||||++|+||||+||+|||+||||+||+|++++|+.|+.+||
T Consensus 19 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN 98 (329)
T 3o47_A 19 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 98 (329)
T ss_dssp ----CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCH
T ss_pred cCCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCc
Confidence 55788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCC
Q 010564 81 EKANSYWEAELP 92 (507)
Q Consensus 81 ~raN~iwEa~lP 92 (507)
.++|+|||+...
T Consensus 99 ~~~n~~~e~~~~ 110 (329)
T 3o47_A 99 AKFREFLESQED 110 (329)
T ss_dssp HHHHHHHHTCSS
T ss_pred HHHHHHHHhcCC
Confidence 999999998753
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=84.51 E-value=0.57 Score=44.28 Aligned_cols=76 Identities=20% Similarity=0.466 Sum_probs=49.0
Q ss_pred CCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhHHHHHHhhcCCCCCC
Q 010564 17 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYD 96 (507)
Q Consensus 17 PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~raN~iwEa~lPps~d 96 (507)
|.-..|+.||..+..|.+...|.++|..|...+ .++.+++..|+.+-+.....+..-.+++. .
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~~~~~~~~~~~~-~ 210 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTVRASFEQPVPSA-D 210 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCHHHHHHSCCCGG-G
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCHHHHhhCCCCHH-H
Confidence 555799999998777889999999999985321 35678888887765544444433333322 2
Q ss_pred hhhHHHHHHHHhh
Q 010564 97 RVGIENFIRAKYE 109 (507)
Q Consensus 97 ~~~re~FIraKY~ 109 (507)
....+++++.-|.
T Consensus 211 ~~~~~~ll~~~~~ 223 (244)
T 1u5k_A 211 RPALWRALEKFVT 223 (244)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2344555554443
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=68.72 E-value=1.5 Score=32.98 Aligned_cols=38 Identities=34% Similarity=0.790 Sum_probs=32.2
Q ss_pred CCCCCcccCCCC-CCCceecchhHHHhHHhhhhhhcCCC
Q 010564 17 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 54 (507)
Q Consensus 17 PgNk~CADCGA~-~P~WASvn~GVFLC~~CSGIHRsLG~ 54 (507)
...+.|.+|+.. -|.|=.-..|..||-.|.-.++..|.
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 356899999986 67899988999999999998887664
No 17
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=63.21 E-value=2.5 Score=33.72 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=33.0
Q ss_pred CCCCCCcccCCCC-CCCceecchhHHHhHHhhhhhhcCCC
Q 010564 16 LPENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 54 (507)
Q Consensus 16 ~PgNk~CADCGA~-~P~WASvn~GVFLC~~CSGIHRsLG~ 54 (507)
......|++|+.. -|.|=.-..|-.||-.|.-.++..+.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 4567899999986 67999999999999999988887664
No 18
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=59.53 E-value=2.9 Score=30.93 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=29.7
Q ss_pred CCcccCCCC-CCCceecchhHHHhHHhhhhhhcCCC
Q 010564 20 RECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 54 (507)
Q Consensus 20 k~CADCGA~-~P~WASvn~GVFLC~~CSGIHRsLG~ 54 (507)
+.|++|+.. -|.|=.-..|-.||-.|.-..|..|.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999986 67899999999999999988776553
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=57.87 E-value=3.3 Score=33.23 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=32.3
Q ss_pred CCCCCcccCCCC-CCCceecchhHHHhHHhhhhhhcCCC
Q 010564 17 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 54 (507)
Q Consensus 17 PgNk~CADCGA~-~P~WASvn~GVFLC~~CSGIHRsLG~ 54 (507)
.....|++|+.. -|.|-.-..|-.||-.|.-.++..+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 456899999986 78999999999999999988877664
No 20
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=51.73 E-value=4.1 Score=35.59 Aligned_cols=36 Identities=33% Similarity=0.804 Sum_probs=29.7
Q ss_pred CCCcccCCCC-CCCceecchhHHHhHHhhhhhhcCCC
Q 010564 19 NRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 54 (507)
Q Consensus 19 Nk~CADCGA~-~P~WASvn~GVFLC~~CSGIHRsLG~ 54 (507)
-+.|++||+. -|.|=.-..|-+||-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 4789999985 78999888999999999887765543
No 21
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=41.49 E-value=4.5 Score=32.94 Aligned_cols=36 Identities=22% Similarity=0.581 Sum_probs=29.2
Q ss_pred CCCCcccCCCC-CCCcee--cchhHHHhHHhhhhhhcCCC
Q 010564 18 ENRECADCKAK-GPRWAS--VNLGIFICMQCSGIHRSLGV 54 (507)
Q Consensus 18 gNk~CADCGA~-~P~WAS--vn~GVFLC~~CSGIHRsLG~ 54 (507)
....|++|+.. -|.|=. -.-| .||-.|.-.+|..+.
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 45899999986 778988 6777 899999988887664
No 22
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=31.78 E-value=5.2 Score=35.05 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=24.5
Q ss_pred CCCCcccCCCCCCCc-eecchhHHHhHHhhhhh
Q 010564 18 ENRECADCKAKGPRW-ASVNLGIFICMQCSGIH 49 (507)
Q Consensus 18 gNk~CADCGA~~P~W-ASvn~GVFLC~~CSGIH 49 (507)
+...|.+||..--.| ..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 556899999874444 45699999999998653
No 23
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=30.95 E-value=14 Score=33.63 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=23.0
Q ss_pred CCCCCcccCCCCCC-CceecchhHHHhHHhhhhhh
Q 010564 17 PENRECADCKAKGP-RWASVNLGIFICMQCSGIHR 50 (507)
Q Consensus 17 PgNk~CADCGA~~P-~WASvn~GVFLC~~CSGIHR 50 (507)
..-.+|.+||..=| .-.-.--++-+|+.|...|.
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 45689999998733 11222335678999998764
No 24
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=28.61 E-value=11 Score=31.23 Aligned_cols=30 Identities=17% Similarity=0.582 Sum_probs=24.4
Q ss_pred CCCCcccCCCCCCCceecchhHHHhHHhhhhhh
Q 010564 18 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 50 (507)
Q Consensus 18 gNk~CADCGA~~P~WASvn~GVFLC~~CSGIHR 50 (507)
|++.|.=||.... ...||++.|..|.+..|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999997643 46899999999999876
No 25
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=28.55 E-value=14 Score=32.23 Aligned_cols=32 Identities=25% Similarity=0.573 Sum_probs=21.8
Q ss_pred CCCcccCCCCCC-CceecchhHHHhHHhhhhhh
Q 010564 19 NRECADCKAKGP-RWASVNLGIFICMQCSGIHR 50 (507)
Q Consensus 19 Nk~CADCGA~~P-~WASvn~GVFLC~~CSGIHR 50 (507)
--+|.+||.+=| .-.-.--++-+|+.|...+.
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 579999998733 12222335678999998764
No 26
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=28.32 E-value=17 Score=37.39 Aligned_cols=31 Identities=29% Similarity=0.648 Sum_probs=24.8
Q ss_pred CCCCCcccCCCCCCCceecchhHHHhHHhhhhhh
Q 010564 17 PENRECADCKAKGPRWASVNLGIFICMQCSGIHR 50 (507)
Q Consensus 17 PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHR 50 (507)
..+..|.=||..... ..|||+.|..|.+..|
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 346789999987653 5899999999999876
No 27
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=27.21 E-value=15 Score=30.04 Aligned_cols=40 Identities=20% Similarity=0.418 Sum_probs=30.6
Q ss_pred HHHHHHHH-hcCCCCCCcccCCCCCCCceecchhHHHhHHhhh
Q 010564 6 FMQILEGL-LKLPENRECADCKAKGPRWASVNLGIFICMQCSG 47 (507)
Q Consensus 6 ~ekiL~~L-lk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSG 47 (507)
.++.+.++ ........|.-||.....+.. .||+.|..|.-
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 35555555 567888999999987777665 58999999964
No 28
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.17 E-value=24 Score=30.74 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=32.4
Q ss_pred CCCCCcccCCCC-CCCceecchhHHHhHHhhhhhhcCCC
Q 010564 17 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 54 (507)
Q Consensus 17 PgNk~CADCGA~-~P~WASvn~GVFLC~~CSGIHRsLG~ 54 (507)
.....|++|+.. -|.|=.-..|-.||-.|.-.++..+.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 456899999986 78999999999999999988877664
No 29
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=23.38 E-value=23 Score=30.99 Aligned_cols=30 Identities=20% Similarity=0.613 Sum_probs=25.4
Q ss_pred CCCCcccCCCCCCCceecchhHHHhHHhhhhhh
Q 010564 18 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 50 (507)
Q Consensus 18 gNk~CADCGA~~P~WASvn~GVFLC~~CSGIHR 50 (507)
.+..|.=||.... ...||++.|..|.+..|
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 36 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFR 36 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhh
Confidence 4678999997643 67999999999999887
No 30
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=22.63 E-value=23 Score=29.57 Aligned_cols=31 Identities=26% Similarity=0.647 Sum_probs=25.8
Q ss_pred CCCCCcccCCCCCCCceecchhHHHhHHhhhhhh
Q 010564 17 PENRECADCKAKGPRWASVNLGIFICMQCSGIHR 50 (507)
Q Consensus 17 PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHR 50 (507)
+.+..|.=||.... ...||++.|..|.+..|
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFK 35 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhh
Confidence 45678999997643 56899999999999887
No 31
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=21.59 E-value=20 Score=30.81 Aligned_cols=32 Identities=19% Similarity=0.634 Sum_probs=25.4
Q ss_pred CCCCCCcccCCCCCCCceecchhHHHhHHhhhhhh
Q 010564 16 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHR 50 (507)
Q Consensus 16 ~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHR 50 (507)
.+.+..|.=||... ....||++.|..|.+..|
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 35 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFK 35 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhc
Confidence 35678899999753 367999999999999887
No 32
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=21.16 E-value=25 Score=28.98 Aligned_cols=30 Identities=27% Similarity=0.720 Sum_probs=25.3
Q ss_pred CCCCcccCCCCCCCceecchhHHHhHHhhhhhh
Q 010564 18 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 50 (507)
Q Consensus 18 gNk~CADCGA~~P~WASvn~GVFLC~~CSGIHR 50 (507)
+...|.=||... ....||++.|..|.+..|
T Consensus 3 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 32 (84)
T 1hcq_A 3 ETRYCAVCNDYA---SGYHYGVWSCEGCKAFFK 32 (84)
T ss_dssp CCCBCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CCCcCcEECCCC---CCeeeCccchHHhhhhhh
Confidence 567899999764 367999999999999887
No 33
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=20.93 E-value=24 Score=30.17 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=23.3
Q ss_pred CCcccCCCCCCCceecchhHHHhHHhhhhhh
Q 010564 20 RECADCKAKGPRWASVNLGIFICMQCSGIHR 50 (507)
Q Consensus 20 k~CADCGA~~P~WASvn~GVFLC~~CSGIHR 50 (507)
..|.=||.... ...||++.|..|.+..|
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFR 29 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFR 29 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhe
Confidence 57889997543 56899999999999887
Done!