Query 010566
Match_columns 507
No_of_seqs 163 out of 1564
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rix_A Luciferase, luciferin 4 100.0 2.4E-59 8.3E-64 491.0 40.6 407 37-507 13-429 (550)
2 1v25_A Long-chain-fatty-acid-C 100.0 5.4E-59 1.9E-63 487.2 42.9 395 43-507 17-425 (541)
3 3g7s_A Long-chain-fatty-acid-- 100.0 4.9E-59 1.7E-63 488.6 42.6 403 36-507 11-429 (549)
4 3ni2_A 4-coumarate:COA ligase; 100.0 3E-59 1E-63 488.8 37.5 412 22-507 4-424 (536)
5 3o83_A Peptide arylation enzym 100.0 1.7E-58 5.8E-63 483.8 40.6 391 43-507 29-429 (544)
6 3etc_A AMP-binding protein; ad 100.0 8E-58 2.7E-62 481.3 42.0 397 41-507 53-465 (580)
7 3r44_A Fatty acyl COA syntheta 100.0 3.1E-58 1.1E-62 478.8 38.1 391 38-507 10-403 (517)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.8E-58 1.3E-62 480.5 36.0 387 43-507 24-420 (539)
9 2d1s_A Luciferase, luciferin 4 100.0 1.6E-57 5.4E-62 476.6 40.7 412 23-507 8-431 (548)
10 3t5a_A Long-chain-fatty-acid-- 100.0 1.6E-57 5.4E-62 470.1 35.3 388 41-505 21-471 (480)
11 3ivr_A Putative long-chain-fat 100.0 5.7E-57 1.9E-61 468.9 39.4 382 42-507 4-388 (509)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 7.9E-57 2.7E-61 467.1 40.0 379 43-507 1-392 (504)
13 3c5e_A Acyl-coenzyme A synthet 100.0 2.6E-56 8.9E-61 469.1 42.8 394 41-507 35-446 (570)
14 4gr5_A Non-ribosomal peptide s 100.0 1.3E-56 4.3E-61 472.2 38.1 373 39-507 70-459 (570)
15 1pg4_A Acetyl-COA synthetase; 100.0 2E-56 6.9E-61 477.0 38.6 406 43-507 75-507 (652)
16 2v7b_A Benzoate-coenzyme A lig 100.0 2.1E-56 7.2E-61 466.8 37.7 393 41-507 21-419 (529)
17 4fuq_A Malonyl COA synthetase; 100.0 1.2E-56 4.2E-61 465.2 35.2 382 48-507 4-389 (503)
18 1ry2_A Acetyl-coenzyme A synth 100.0 6.5E-56 2.2E-60 473.3 38.9 408 43-507 81-516 (663)
19 1amu_A GRSA, gramicidin synthe 100.0 8.7E-56 3E-60 464.5 36.3 375 37-507 32-420 (563)
20 3rg2_A Enterobactin synthase c 100.0 2.1E-55 7.3E-60 466.9 38.6 390 42-507 25-424 (617)
21 4dg8_A PA1221; ANL superfamily 100.0 2.7E-55 9.2E-60 464.7 39.0 370 41-507 24-409 (620)
22 3tsy_A Fusion protein 4-coumar 100.0 1E-55 3.6E-60 492.9 37.7 423 17-507 38-471 (979)
23 3e7w_A D-alanine--poly(phospho 100.0 2.1E-55 7.2E-60 457.2 37.1 373 44-506 1-388 (511)
24 3fce_A D-alanine--poly(phospho 100.0 1.7E-55 5.8E-60 458.1 33.9 373 44-505 1-388 (512)
25 3l8c_A D-alanine--poly(phospho 100.0 3.3E-55 1.1E-59 457.1 34.6 375 43-507 3-393 (521)
26 3kxw_A Saframycin MX1 syntheta 100.0 1.1E-54 3.8E-59 460.2 36.2 390 41-506 8-448 (590)
27 3gqw_A Fatty acid AMP ligase; 100.0 2.8E-54 9.6E-59 455.9 37.2 394 33-505 10-450 (576)
28 3ipl_A 2-succinylbenzoate--COA 100.0 5.8E-55 2E-59 453.0 29.6 383 45-507 2-388 (501)
29 3nyq_A Malonyl-COA ligase; A/B 100.0 5.3E-55 1.8E-59 452.9 27.6 371 41-507 19-395 (505)
30 3ite_A SIDN siderophore synthe 100.0 5.9E-54 2E-58 451.7 35.8 391 39-507 15-417 (562)
31 2vsq_A Surfactin synthetase su 100.0 1.3E-51 4.4E-56 471.1 39.7 373 43-507 463-851 (1304)
32 4gs5_A Acyl-COA synthetase (AM 100.0 4.8E-32 1.7E-36 267.6 16.6 205 221-507 36-241 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 2.6E-30 8.8E-35 263.0 22.8 227 218-507 81-312 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 1.3E-29 4.4E-34 257.9 24.5 242 199-506 70-316 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 2E-29 7E-34 256.9 23.4 243 199-507 72-319 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 7.1E-29 2.4E-33 246.7 18.4 226 219-500 88-349 (369)
37 4eql_A 4-substituted benzoates 95.1 0.89 3.1E-05 46.5 17.6 55 196-250 65-122 (581)
38 4b2g_A GH3-1 auxin conjugating 94.4 0.8 2.7E-05 47.0 15.1 54 196-249 71-127 (609)
39 2y27_A Phenylacetate-coenzyme 92.5 0.97 3.3E-05 44.7 12.1 125 57-184 88-221 (437)
40 2y4o_A Phenylacetate-coenzyme 92.0 1.3 4.3E-05 43.9 12.2 125 57-184 90-223 (443)
41 3qov_A Phenylacetate-coenzyme 89.9 1.4 4.8E-05 43.4 10.1 123 59-184 86-217 (436)
42 3ipl_A 2-succinylbenzoate--COA 86.7 10 0.00035 37.9 14.3 122 57-184 161-285 (501)
43 3hgu_A EHPF; phenazine, antibi 81.5 5.1 0.00017 38.3 9.0 104 57-164 89-219 (369)
44 1mdb_A 2,3-dihydroxybenzoate-A 79.6 33 0.0011 34.5 14.8 122 57-184 180-309 (539)
45 3r44_A Fatty acyl COA syntheta 75.7 18 0.00063 36.2 11.4 120 58-184 169-295 (517)
46 2d1s_A Luciferase, luciferin 4 74.6 16 0.00054 37.1 10.6 121 59-183 192-319 (548)
47 4dg8_A PA1221; ANL superfamily 73.9 19 0.00065 37.2 11.2 123 57-185 162-288 (620)
48 3o83_A Peptide arylation enzym 73.4 24 0.00083 35.6 11.7 122 57-184 189-318 (544)
49 4gs5_A Acyl-COA synthetase (AM 72.4 15 0.00053 34.8 9.4 120 56-183 34-158 (358)
50 3fce_A D-alanine--poly(phospho 70.6 34 0.0012 34.1 12.0 123 57-184 142-272 (512)
51 3e7w_A D-alanine--poly(phospho 68.5 50 0.0017 32.8 12.7 123 57-184 141-271 (511)
52 4gr5_A Non-ribosomal peptide s 68.1 21 0.00071 36.4 9.8 122 57-184 212-337 (570)
53 3kxw_A Saframycin MX1 syntheta 67.7 40 0.0014 34.3 12.0 123 57-184 165-300 (590)
54 3g7s_A Long-chain-fatty-acid-- 66.9 56 0.0019 32.9 12.8 107 220-330 32-140 (549)
55 3ivr_A Putative long-chain-fat 66.6 64 0.0022 32.0 13.0 120 57-182 158-281 (509)
56 3c5e_A Acyl-coenzyme A synthet 66.4 32 0.0011 35.0 10.8 123 57-184 204-333 (570)
57 3ni2_A 4-coumarate:COA ligase; 65.1 48 0.0017 33.2 11.8 101 220-330 35-137 (536)
58 3rix_A Luciferase, luciferin 4 64.8 23 0.00077 35.9 9.3 123 59-184 190-318 (550)
59 3rg2_A Enterobactin synthase c 64.5 1.2E+02 0.0043 30.8 15.0 121 58-184 183-313 (617)
60 1v25_A Long-chain-fatty-acid-C 63.6 70 0.0024 32.1 12.7 100 221-328 32-133 (541)
61 3ezx_A MMCP 1, monomethylamine 62.3 59 0.002 28.2 10.3 52 269-320 94-149 (215)
62 1pg4_A Acetyl-COA synthetase; 61.2 44 0.0015 34.6 10.8 123 58-184 255-389 (652)
63 3t5a_A Long-chain-fatty-acid-- 60.6 88 0.003 30.6 12.6 107 220-330 37-148 (480)
64 1ry2_A Acetyl-coenzyme A synth 60.2 68 0.0023 33.3 12.1 100 220-324 95-196 (663)
65 3nyq_A Malonyl-COA ligase; A/B 60.2 61 0.0021 32.2 11.4 103 57-166 153-259 (505)
66 1t5h_X 4-chlorobenzoyl COA lig 58.7 79 0.0027 31.3 11.9 98 220-327 15-116 (504)
67 1amu_A GRSA, gramicidin synthe 57.0 85 0.0029 31.7 12.0 95 220-326 52-148 (563)
68 3tbh_A O-acetyl serine sulfhyd 56.7 46 0.0016 31.2 9.2 65 95-159 62-127 (334)
69 3etc_A AMP-binding protein; ad 53.4 88 0.003 31.7 11.4 97 220-323 69-167 (580)
70 4epl_A Jasmonic acid-amido syn 52.5 3.4 0.00012 42.1 0.5 54 196-249 70-126 (581)
71 2v7b_A Benzoate-coenzyme A lig 50.7 60 0.002 32.4 9.6 87 240-329 47-135 (529)
72 3vc3_A Beta-cyanoalnine syntha 45.5 89 0.003 29.3 9.2 64 96-159 78-142 (344)
73 4fuq_A Malonyl COA synthetase; 44.1 93 0.0032 30.8 9.7 85 240-327 27-113 (503)
74 2vsq_A Surfactin synthetase su 43.3 59 0.002 36.9 8.9 122 57-184 605-731 (1304)
75 3ist_A Glutamate racemase; str 43.3 68 0.0023 29.0 7.6 63 48-117 19-81 (269)
76 3ite_A SIDN siderophore synthe 42.8 91 0.0031 31.3 9.5 123 59-184 175-305 (562)
77 3tsy_A Fusion protein 4-coumar 40.6 1.3E+02 0.0046 32.7 11.0 99 220-328 74-174 (979)
78 4eez_A Alcohol dehydrogenase 1 40.6 1.2E+02 0.004 28.2 9.4 77 79-158 137-216 (348)
79 1z7w_A Cysteine synthase; tran 35.7 1.6E+02 0.0054 27.1 9.2 64 96-159 58-122 (322)
80 4aec_A Cysteine synthase, mito 35.6 1.5E+02 0.0051 28.8 9.2 63 96-158 166-229 (430)
81 3gqw_A Fatty acid AMP ligase; 35.5 2E+02 0.0068 28.7 10.7 87 239-328 47-142 (576)
82 3l8c_A D-alanine--poly(phospho 34.8 1.1E+02 0.0037 30.4 8.4 81 240-323 28-110 (521)
83 2q3b_A Cysteine synthase A; py 33.7 1.9E+02 0.0064 26.5 9.3 64 95-159 58-122 (313)
84 3ju7_A Putative PLP-dependent 33.6 1E+02 0.0035 29.2 7.7 62 93-157 68-136 (377)
85 3tqh_A Quinone oxidoreductase; 31.2 1.5E+02 0.0051 27.2 8.2 75 79-158 126-204 (321)
86 3s2e_A Zinc-containing alcohol 30.7 1.7E+02 0.0059 27.0 8.7 76 79-158 140-218 (340)
87 2egu_A Cysteine synthase; O-ac 30.2 2.1E+02 0.0071 26.1 9.0 64 95-159 56-120 (308)
88 1ve1_A O-acetylserine sulfhydr 29.6 2.8E+02 0.0095 25.1 9.7 64 95-159 51-117 (304)
89 4h1h_A LMO1638 protein; MCCF-l 29.1 1.7E+02 0.0057 27.2 8.0 60 99-158 8-86 (327)
90 2v03_A Cysteine synthase B; py 28.4 2.8E+02 0.0095 25.2 9.5 63 96-159 53-116 (303)
91 4b7c_A Probable oxidoreductase 28.2 1.9E+02 0.0063 26.7 8.4 62 93-157 139-202 (336)
92 2cf5_A Atccad5, CAD, cinnamyl 27.7 1.3E+02 0.0046 28.1 7.3 77 79-158 153-233 (357)
93 2pqm_A Cysteine synthase; OASS 27.5 2.2E+02 0.0075 26.5 8.7 63 96-159 70-133 (343)
94 1o69_A Aminotransferase; struc 27.2 2.4E+02 0.0083 26.4 9.2 61 95-158 64-130 (394)
95 1zsy_A Mitochondrial 2-enoyl t 27.0 2.1E+02 0.0071 26.7 8.6 78 79-157 140-223 (357)
96 3sr3_A Microcin immunity prote 26.8 1.9E+02 0.0066 26.9 8.0 60 99-158 9-87 (336)
97 1ofu_X SULA, hypothetical prot 26.5 2.2E+02 0.0075 21.9 7.4 52 92-143 47-100 (119)
98 2gzm_A Glutamate racemase; enz 26.4 1E+02 0.0034 27.7 5.8 61 48-115 17-77 (267)
99 2jtq_A Phage shock protein E; 26.2 1.4E+02 0.0049 20.7 5.7 46 77-129 22-67 (85)
100 3uhf_A Glutamate racemase; str 26.1 1.1E+02 0.0039 27.6 6.1 63 48-117 38-100 (274)
101 1eg5_A Aminotransferase; PLP-d 26.1 2.2E+02 0.0075 26.3 8.7 8 400-407 306-313 (384)
102 1h2b_A Alcohol dehydrogenase; 26.0 1.7E+02 0.0059 27.3 7.8 64 93-159 175-240 (359)
103 3two_A Mannitol dehydrogenase; 25.8 1.8E+02 0.0063 26.9 7.9 73 79-155 150-225 (348)
104 3pc3_A CG1753, isoform A; CBS, 25.4 2.6E+02 0.0088 27.9 9.3 61 97-158 106-167 (527)
105 3tla_A MCCF; serine protease, 25.2 2E+02 0.0067 27.3 7.8 60 99-158 39-117 (371)
106 2jfz_A Glutamate racemase; cel 25.1 87 0.003 27.9 5.1 61 48-115 14-74 (255)
107 1oft_A SULA, hypothetical prot 25.1 2.3E+02 0.0078 23.2 7.1 52 92-143 89-142 (161)
108 3qwb_A Probable quinone oxidor 25.0 3.4E+02 0.012 24.8 9.6 60 95-158 140-201 (334)
109 3out_A Glutamate racemase; str 25.0 1.4E+02 0.0048 26.8 6.5 61 49-116 22-82 (268)
110 4e5s_A MCCFLIKE protein (BA_56 24.5 2.1E+02 0.0072 26.6 7.8 60 99-158 8-86 (331)
111 1zuw_A Glutamate racemase 1; ( 24.4 2.3E+02 0.0079 25.3 7.9 62 48-116 17-79 (272)
112 3ri6_A O-acetylhomoserine sulf 24.2 2.3E+02 0.0079 27.3 8.5 63 107-169 100-165 (430)
113 3dwg_A Cysteine synthase B; su 24.1 3.2E+02 0.011 25.1 9.1 63 96-159 65-128 (325)
114 3oon_A Outer membrane protein 23.6 1.2E+02 0.0041 23.3 5.1 75 31-108 20-94 (123)
115 3jv7_A ADH-A; dehydrogenase, n 23.5 2.6E+02 0.009 25.7 8.5 78 79-159 143-225 (345)
116 1yqd_A Sinapyl alcohol dehydro 23.5 2.3E+02 0.0077 26.6 8.1 63 93-158 177-240 (366)
117 4ej6_A Putative zinc-binding d 23.1 2.8E+02 0.0094 26.0 8.6 61 93-157 173-234 (370)
118 3dzz_A Putative pyridoxal 5'-p 23.1 2.3E+02 0.0079 26.3 8.2 53 101-156 107-166 (391)
119 2hqs_H Peptidoglycan-associate 22.6 2.1E+02 0.0072 21.7 6.3 64 38-104 16-79 (118)
120 1uuf_A YAHK, zinc-type alcohol 22.5 2.3E+02 0.0078 26.6 7.9 62 93-158 185-246 (369)
121 3ijw_A Aminoglycoside N3-acety 22.3 60 0.0021 29.3 3.4 23 89-111 18-40 (268)
122 1gu7_A Enoyl-[acyl-carrier-pro 21.9 2.2E+02 0.0074 26.6 7.6 78 79-157 139-223 (364)
123 2e7j_A SEP-tRNA:Cys-tRNA synth 21.0 3.7E+02 0.013 24.5 9.1 56 100-158 90-155 (371)
124 3uog_A Alcohol dehydrogenase; 20.9 2.6E+02 0.0089 26.1 7.9 74 79-156 162-239 (363)
125 1mdo_A ARNB aminotransferase; 20.8 2.3E+02 0.0079 26.4 7.6 56 98-157 74-134 (393)
126 3sma_A FRBF; N-acetyl transfer 20.5 68 0.0023 29.2 3.4 28 77-111 20-47 (286)
127 2nyg_A YOKD protein; PFAM02522 20.4 69 0.0023 29.0 3.4 22 90-111 17-38 (273)
128 3a2b_A Serine palmitoyltransfe 20.1 4.1E+02 0.014 24.7 9.3 55 100-158 124-181 (398)
129 3isl_A Purine catabolism prote 20.0 3.7E+02 0.013 25.1 9.0 58 100-158 83-144 (416)
130 2jwk_A Protein TOLR; periplasm 20.0 2.1E+02 0.0071 19.2 5.4 39 44-91 30-68 (74)
No 1
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.4e-59 Score=491.00 Aligned_cols=407 Identities=20% Similarity=0.317 Sum_probs=326.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhh
Q 010566 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (507)
Q Consensus 37 ~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~ 116 (507)
+..+....|+.++|.++++++||++|++... ++..+ +++||+||.++++++|++|+++|+++||+|+|+++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 4445566899999999999999999987320 22111 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcC
Q 010566 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (507)
Q Consensus 117 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 196 (507)
+++++||+++|++++|++|.++.+++.++++.++++++|++.+....+....... +.+..++.++.....
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------- 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL-PIIQKIIIMDSKTDY--------- 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHC-TTCCEEEETTCSSCB---------
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhC-CCcceEEEEcCCccc---------
Confidence 9999999999999999999999999999999999999999988766554433222 455666666543211
Q ss_pred ceEeeHHHHHHcccCCC------CCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcE
Q 010566 197 LAVYSWDEFLQLGENKQ------FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270 (507)
Q Consensus 197 ~~~~~~~~l~~~~~~~~------~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 270 (507)
.....++++........ .+.....++++++|+|||||||.||+|.++|.+++..+......+ ....+..+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 12345666655432211 111222457899999999999999999999999998877643321 1135778999
Q ss_pred EEEecChhHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHH
Q 010566 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 271 ~~~~~pl~h~~g~~~~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (507)
+++.+|++|.+++...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------ 298 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS------------------ 298 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC------------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC------------------
Confidence 9999999999999888889999999999876 999999999999999999999999998652
Q ss_pred HHHHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCc-EEeecccccCccceec
Q 010566 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH-VLQGYGLTETCAGTFV 428 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-v~~~YG~tE~~~~~~~ 428 (507)
+..+..++ +++|.+++||+++++++.+.+.+.++.. +++.||+||+++.++.
T Consensus 299 -------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 299 -------------------TLIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp -------------------CGGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred -------------------ccccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 11111112 3899999999999999999999999875 9999999999988777
Q ss_pred cCCCCCccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc-ccCceeec-cEEEec
Q 010566 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQ 506 (507)
Q Consensus 429 ~~~~~~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~ 506 (507)
...... .++++|+|+|+++++|+|.++++. ++.|+.|||+|+|++++.|||++|+.|.+.| .+|||+|| +|++|+
T Consensus 352 ~~~~~~-~~~~vG~~~~~~~~~i~d~~~~~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~ 428 (550)
T 3rix_A 352 TPEGDD-KPGAVGKVVPFFEAKVVDLDTGKT--LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428 (550)
T ss_dssp CCTTCC-CTTEEEEECTTCEEEEECTTTCCB--CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred CCCCCC-CCCCcccccCCcEEEEEeCCCCcC--CCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence 665543 458999999999999999333444 4456999999999999999999999999999 89999999 999998
Q ss_pred C
Q 010566 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 429 d 429 (550)
T 3rix_A 429 D 429 (550)
T ss_dssp T
T ss_pred C
Confidence 6
No 2
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=5.4e-59 Score=487.20 Aligned_cols=395 Identities=22% Similarity=0.306 Sum_probs=326.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHHH
Q 010566 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 122 (507)
..|+.++|+++++++||++|+++. +. +..+++||+||.++++++|++|+++|+++||+|+++++|+++++++++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 22 2337899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010566 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|++|.++.+++.++++.++++++|++.+....+...... .+.++.++.++..... ....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKTVQHFVVMDEKAPE----------GYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGG-CSSCCEEEESSSCCCT----------TCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhh-CCCccEEEEecCCCCc----------ccccH
Confidence 999999999999999999999999999999999998766554443322 2445566665543210 12356
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHH
Q 010566 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g 282 (507)
+++...... .....++++++++|||||||.||+|.++|.+++....... .....+++.+|++++.+|++|.++
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~d~~l~~~p~~h~~~ 233 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVVPMFHVNA 233 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT---STTTTCCCTTCEEEECSCTTSHHH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh---hcccccCCCCCEEEEeccchhhhH
Confidence 665433211 1344678999999999999999999999999987665421 112336788999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhc
Q 010566 283 RAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 283 ~~~~~~~l~~G~~vvl~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
+..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.......
T Consensus 234 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------- 290 (541)
T 1v25_A 234 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH----------------------- 290 (541)
T ss_dssp HTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC-----------------------
T ss_pred HHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC-----------------------
Confidence 9777888999999999863 999999999999999999999999998765432211
Q ss_pred CCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCCC-------
Q 010566 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE------- 433 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~------- 433 (507)
..+++|.+++||+++++++.+.+ +.+|+++++.||+||++.+++.+....
T Consensus 291 ----------------------~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 347 (541)
T 1v25_A 291 ----------------------RLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSE 347 (541)
T ss_dssp ----------------------CCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCH
T ss_pred ----------------------cchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCc
Confidence 11389999999999999999999 567999999999999998777654431
Q ss_pred ---CccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc-ccCceeec-cEEEecC
Q 010566 434 ---MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 434 ---~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
....+++|+|+||++++|+| ++++.++.+.++.|||+|+||+++.|||++|+.|++.| .||||+|| +|++|+|
T Consensus 348 ~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~d 425 (541)
T 1v25_A 348 EEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425 (541)
T ss_dssp HHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTT
T ss_pred cccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCC
Confidence 02347899999999999999 88887776555799999999999999999999999999 59999999 9999976
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.9e-59 Score=488.57 Aligned_cols=403 Identities=22% Similarity=0.305 Sum_probs=335.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCC--CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Q 010566 36 FPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGK--AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC 113 (507)
Q Consensus 36 ~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~ 113 (507)
++..+....|+.++|+++++++||++|+++. ++. .+.++++||+||.++++++|++|++.|+++||+|+|+++|+
T Consensus 11 ~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 87 (549)
T 3g7s_A 11 FPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNS 87 (549)
T ss_dssp CCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS
T ss_pred CCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 3444556789999999999999999999987 521 23446899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHh
Q 010566 114 PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (507)
Q Consensus 114 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 193 (507)
++++++++||+++|++++||+|.++.+++.++++.++++++|++......+....... ....++..+..
T Consensus 88 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------- 156 (549)
T 3g7s_A 88 IDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE--------- 156 (549)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS---------
T ss_pred HHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC---------
Confidence 9999999999999999999999999999999999999999999988766655544332 24455555432
Q ss_pred hcCceEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 010566 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (507)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~ 273 (507)
...++++...............++++++|+|||||||.||+|.++|.++++.+..+...+ ++...|++++
T Consensus 157 -----~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~ 226 (549)
T 3g7s_A 157 -----VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVG 226 (549)
T ss_dssp -----SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEEC
T ss_pred -----CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEE
Confidence 235666665443222222222348999999999999999999999999999998865544 7889999999
Q ss_pred ecChhHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 010566 274 YLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (507)
Q Consensus 274 ~~pl~h~~g~~~~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (507)
.+|++|.+++..++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++........
T Consensus 227 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------- 292 (549)
T 3g7s_A 227 CMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT-------------- 292 (549)
T ss_dssp CSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC--------------
T ss_pred eCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc--------------
Confidence 9999999999888888999999999876 9999999999999999999999999987754332100
Q ss_pred HHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHH----hC---CcEEeecccccCccc
Q 010566 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV----AC---AHVLQGYGLTETCAG 425 (507)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~---~~v~~~YG~tE~~~~ 425 (507)
. ..+++|.+++||+++++++.+.+.+. ++ +.+++.||+||++.+
T Consensus 293 ---------------------~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 343 (549)
T 3g7s_A 293 ---------------------Y--------DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPM 343 (549)
T ss_dssp ---------------------C--------CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSE
T ss_pred ---------------------C--------CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchh
Confidence 0 01379999999999999999999887 56 889999999999988
Q ss_pred eeccCCCCCccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc---ccC--ceeec
Q 010566 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM---VDG--WFHTG 500 (507)
Q Consensus 426 ~~~~~~~~~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~---~dg--w~~TG 500 (507)
++.+........+++|+|++|++++|+|.++++.++ .|+.|||+|+||+++.|||++|+.+++.| .+| ||+||
T Consensus 344 ~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TG 421 (549)
T 3g7s_A 344 VTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELG--VGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTG 421 (549)
T ss_dssp EEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEEC--TTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEE
T ss_pred hhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCC--CCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccC
Confidence 877766554556899999999999999955555544 45999999999999999999999999998 678 99999
Q ss_pred -cEEEecC
Q 010566 501 -MGVWEQL 507 (507)
Q Consensus 501 -lg~~d~d 507 (507)
+|++|+|
T Consensus 422 Dl~~~~~d 429 (549)
T 3g7s_A 422 DVGFIDEE 429 (549)
T ss_dssp EEEEECTT
T ss_pred cEEEEcCC
Confidence 9999986
No 4
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3e-59 Score=488.79 Aligned_cols=412 Identities=22% Similarity=0.274 Sum_probs=330.9
Q ss_pred CCCCeeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCC
Q 010566 22 SIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (507)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~ 101 (507)
....+|++...... .+...|+.++|.++++++||++|+++. +++ +.+||+||.++++++|++|+++|++
T Consensus 4 ~~~~i~~~~~~~~~----~p~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIY----IPKNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCC----CCSSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCC----CCCCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 34456666654332 234589999999999999999999864 322 5799999999999999999999999
Q ss_pred CCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEe
Q 010566 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181 (507)
Q Consensus 102 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~ 181 (507)
+||+|+|+++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++......+...... ... .++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARE--SDV-KVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHH--HTC-EEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhh--cCc-eEEEe
Confidence 999999999999999999999999999999999999999999999999999999998765554433211 112 34444
Q ss_pred cCCChhhHHHHhhcCceEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhc
Q 010566 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261 (507)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~ 261 (507)
+.... ....++++...... ..+.....++++++++|||||||.||+|.++|.++++.+....... ..
T Consensus 150 ~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~ 216 (536)
T 3ni2_A 150 DSAPD-----------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NP 216 (536)
T ss_dssp SCCCT-----------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SC
T ss_pred cCCCC-----------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-cc
Confidence 43221 23456666654322 2233345789999999999999999999999999998876633211 11
Q ss_pred cccCCCCcEEEEecChhHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhcc
Q 010566 262 NEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (507)
Q Consensus 262 ~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~ 339 (507)
...+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------- 288 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKS-------- 288 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTC--------
T ss_pred cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhC--------
Confidence 335778999999999999999965 6788999999999876 999999999999999999999999987641
Q ss_pred chhHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcEEeecc
Q 010566 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYG 418 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG 418 (507)
+.....++ +++|.+++||+++++++.+.+++.+ ++.+++.||
T Consensus 289 -----------------------------~~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 289 -----------------------------PDLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp -----------------------------SCGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred -----------------------------cccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 11111112 3899999999999999999999988 899999999
Q ss_pred cccCccceeccC----CCCCccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc-c
Q 010566 419 LTETCAGTFVSL----PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V 493 (507)
Q Consensus 419 ~tE~~~~~~~~~----~~~~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~ 493 (507)
+||++.+++.+. ......++++|+|++|++++|+|.++++.+ +.|+.|||+|+|++++.|||++|+.|.+.| .
T Consensus 332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~--~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 409 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASL--PRNQPGEICIRGDQIMKGYLNDPEATSRTIDK 409 (536)
T ss_dssp CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBC--CTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCC--CCCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence 999997765542 122334589999999999999993334444 456999999999999999999999999999 8
Q ss_pred cCceeec-cEEEecC
Q 010566 494 DGWFHTG-MGVWEQL 507 (507)
Q Consensus 494 dgw~~TG-lg~~d~d 507 (507)
+|||+|| +|++|+|
T Consensus 410 ~g~~~TGDl~~~~~d 424 (536)
T 3ni2_A 410 EGWLHTGDIGYIDDD 424 (536)
T ss_dssp TSCEEEEEEEEECTT
T ss_pred CCceEcccEEEEcCC
Confidence 9999999 9999986
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.7e-58 Score=483.79 Aligned_cols=391 Identities=13% Similarity=0.156 Sum_probs=322.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHHH
Q 010566 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 122 (507)
..|+.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|+++++++++|
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~-----~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG-----E----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET-----T----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC-----C----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999863 2 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChh----HHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010566 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++.++....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999986531 111111111134445555543311
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChh
Q 010566 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~ 278 (507)
...+.++...............++++++++|||||||.||+|.++|.++.+.+......+ ++..+|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123445554433222223455688999999999999999999999999999998865544 788999999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 010566 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 279 h~~g~~~--~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.....
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 302 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY-------------------- 302 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT--------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc--------------------
Confidence 9999974 7788999999999876 9999999999999999999999999987642211
Q ss_pred hhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCCCCc
Q 010566 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 435 (507)
..++ +++|.+++||+++++++.+.+.+.+++.+++.||+||++..++........
T Consensus 303 -----------------~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 303 -----------------KDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp -----------------HHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -----------------cccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 1111 389999999999999999999999999999999999998655444333333
Q ss_pred cCCccCccc-cCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc-ccCceeec-cEEEecC
Q 010566 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~svG~p~-pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
..+++|+|+ ++++++|+| ++++.++. |+.|||+|+||+++.|||++|+.+.+.| .+|||+|| +|++|+|
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~d 429 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYREVPE--GEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPD 429 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTT
T ss_pred ccCCCceecCCCcEEEEEC-CCCCCCCC--CCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCC
Confidence 457899996 899999999 88776655 4999999999999999999999999999 89999999 9999986
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=8e-58 Score=481.31 Aligned_cols=397 Identities=18% Similarity=0.188 Sum_probs=324.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHH
Q 010566 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 120 (507)
..++...++|+++++++||++|+++. +. .+..+.+||+||.++++++|++|+++|+++||+|+|+++|++++++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 44556669999999999999999986 43 344578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCCh--hHHhhcCCCCCCCc-cEEEEecCCChhhHHHHhhcCc
Q 010566 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI--PEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
+||+++|++++|+++.++.+++.++++.++++++|++.+.. ..+....... +.+ ..++.++.... .
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~ 197 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC-GDIPLKKAKVGGDVL----------E 197 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHH-CSCCCEEEEESSSCC----------T
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhC-CCcceEEEEeCCccc----------c
Confidence 99999999999999999999999999999999999987654 3332222111 222 34455443211 1
Q ss_pred eEeeHHHHHHcccCCCCCC---CCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010566 198 AVYSWDEFLQLGENKQFDL---PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~ 274 (507)
....+.+............ ....++++++++|||||||.||+|.++|.+++..+.... ....+..++++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 272 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAK-----YWQNVEDDGLHYTV 272 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHH-----TTSCCCTTCEEEEC
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHH-----HhhCCCCCceEEEe
Confidence 2456666665442211111 245789999999999999999999999999888776632 23467889999999
Q ss_pred cChhHHHHHHH-HHHHHHcCCEEEEec---CCHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 010566 275 LPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 275 ~pl~h~~g~~~-~~~~l~~G~~vvl~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
.|++|..+++. ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.|++.
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------------------- 333 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE------------------- 333 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-------------------
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-------------------
Confidence 99999888875 678899999999874 3999999999999999999999999987541
Q ss_pred HHHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccC
Q 010566 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~ 430 (507)
.....++ ++||.+++||+++++++.+++.+.+|+++++.||+||++..++...
T Consensus 334 -------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 386 (580)
T 3etc_A 334 -------------------DLSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP 386 (580)
T ss_dssp -------------------CC---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred -------------------ccccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence 0111111 4899999999999999999999989999999999999987666554
Q ss_pred CCCCccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEec-----CcccccccCCchhhhhhcccCceeec-cEEE
Q 010566 431 PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG-----STVFSGYYKREDLTKEVMVDGWFHTG-MGVW 504 (507)
Q Consensus 431 ~~~~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g-----~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~ 504 (507)
.. ...++++|+|+||++++|+| ++++.++. |+.|||+|+| ++++.||+++|+.+.+.|.||||+|| +|++
T Consensus 387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~~~~~--g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~ 462 (580)
T 3etc_A 387 WM-EPKPGSIGKPTPGYKIELMD-RDGRLCEV--GEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWM 462 (580)
T ss_dssp TS-CCCTTCCBEECTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEE
T ss_pred CC-CCCCCccccCCCCCEEEEEC-CCCCCCCC--CCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEE
Confidence 43 34458999999999999999 88776655 4999999997 78999999999999999999999999 9999
Q ss_pred ecC
Q 010566 505 EQL 507 (507)
Q Consensus 505 d~d 507 (507)
|+|
T Consensus 463 d~d 465 (580)
T 3etc_A 463 DED 465 (580)
T ss_dssp CTT
T ss_pred CCC
Confidence 986
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=3.1e-58 Score=478.80 Aligned_cols=391 Identities=22% Similarity=0.299 Sum_probs=318.7
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhH
Q 010566 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (507)
Q Consensus 38 ~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~ 117 (507)
...+...|+.++|+++++++||++|+++. +.. +++||+||.++++++|++|+++|+++||+|+|+++|+++++
T Consensus 10 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~ 82 (517)
T 3r44_A 10 DDDDKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFC 82 (517)
T ss_dssp --CGGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred CCcccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHH
Confidence 34467799999999999999999999865 332 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCc
Q 010566 118 IGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 118 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
++++||+++|++++|++|.++.+++.++++.++++++|++......+....... .....++.+..
T Consensus 83 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------- 147 (517)
T 3r44_A 83 CLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG-------------- 147 (517)
T ss_dssp HHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE--------------
T ss_pred HHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC--------------
Confidence 999999999999999999999999999999999999999987655443322111 11111111110
Q ss_pred eEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010566 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl 277 (507)
...+.+...... .........++++++++|||||||.||+|.++|.++.+.+..+...+ ++..+|++++.+|+
T Consensus 148 -~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 220 (517)
T 3r44_A 148 -ADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPM 220 (517)
T ss_dssp -HHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCT
T ss_pred -cccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCch
Confidence 012334333221 22233445789999999999999999999999999999988855544 78899999999999
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Q 010566 278 AHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 278 ~h~~g~~~~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
+|.+++...+.+++.|+++++.+. ++..+++.+.++++|++.++|++++.+.+.....
T Consensus 221 ~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------- 279 (517)
T 3r44_A 221 FHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA--------------------- 279 (517)
T ss_dssp TSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH---------------------
T ss_pred HHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc---------------------
Confidence 999999876666569999998876 9999999999999999999999999886532111
Q ss_pred hhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCCC-Cc
Q 010566 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MS 435 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~ 435 (507)
....+++|.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ..
T Consensus 280 ------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~ 334 (517)
T 3r44_A 280 ------------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALR 334 (517)
T ss_dssp ------------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTT
T ss_pred ------------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccc
Confidence 1112489999999999999999999986 899999999999988776654433 34
Q ss_pred cCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhcccCceeec-cEEEecC
Q 010566 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
..+++|+|+++++++|+| +++..++.+ .|||+|+|++++.|||++|+.+.+.|.+|||+|| +|++|+|
T Consensus 335 ~~~~~G~~~~~~~~~i~d-~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~d 403 (517)
T 3r44_A 335 KAGSAGRATMFTDVAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDE 403 (517)
T ss_dssp TTTCCBEECTTEEEEEEC-TTSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTT
T ss_pred cCCCCCcCCCCeEEEEEC-CCCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCC
Confidence 458999999999999999 777665554 7999999999999999999999999999999999 9999986
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.8e-58 Score=480.54 Aligned_cols=387 Identities=15% Similarity=0.179 Sum_probs=313.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHHH
Q 010566 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 122 (507)
..|+.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|+++++++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 478999999999999999999853 2 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChh----HHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010566 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
|+++|++++|++|.++.+++.++++.++++++|++..... ..........+.++.+++.+...
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999875321 11110000113344454443211
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChh
Q 010566 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~ 278 (507)
.+.++.... ..........++++++++|||||||.||+|.++|.++++.+..+...+ +++.+|++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 011121111 111122345678999999999999999999999999999888765544 678899999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 010566 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 279 h~~g~~~--~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
|.+++.. ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------ 295 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD------------------ 295 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCC------------------
Confidence 9999974 7888999999999876 999999999999999999999999998764322110
Q ss_pred hhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCCCCc
Q 010566 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 435 (507)
..+++|.+++||+++++++.+.+++.+|+.+++.||+||++..+.........
T Consensus 296 ---------------------------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 296 ---------------------------DLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp ---------------------------CCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ---------------------------CccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 11389999999999999999999998999999999999975433322211122
Q ss_pred cCCccCccccC-eeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc-ccCceeec-cEEEecC
Q 010566 436 MIGTVGPPVPN-VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~svG~p~pg-~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
..+++|+|+++ .+++|+| ++++.++. |+.|||+|+||+++.|||++|+.|.+.| .||||+|| +|++|+|
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~d 420 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDRDVKP--GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD 420 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTT
T ss_pred cCCCCCcccCCCceEEEEC-CCCCCCcC--CCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCC
Confidence 34789999976 5899999 77776654 5999999999999999999999999999 79999999 9999986
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.6e-57 Score=476.61 Aligned_cols=412 Identities=23% Similarity=0.308 Sum_probs=325.1
Q ss_pred CCCeeecCccCCCCCCCCCCCCCHHH-HHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCC
Q 010566 23 IGPVYRSLFAKDGFPAPIPGMESCWD-VFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (507)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~tl~~-~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~ 101 (507)
.+++|++..... ..+.+.|+.+ +|.++++++ |++|+++. +++ +++||+||.++++++|+.|+++|++
T Consensus 8 ~~~~~~~~~~~~----~~p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 75 (548)
T 2d1s_A 8 ENIVVGPKPFYP----IEEGSAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLV 75 (548)
T ss_dssp TTSEECCCCSSC----CCSSCHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCC
T ss_pred cceEecCCCCCC----CCCCcCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCC
Confidence 346677664321 1234468999 899999999 99999863 222 5799999999999999999999999
Q ss_pred CCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEe
Q 010566 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181 (507)
Q Consensus 102 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~ 181 (507)
+||+|+|+++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++......+....... +....++.+
T Consensus 76 ~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~ 154 (548)
T 2d1s_A 76 VDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTV-TTIKTIVIL 154 (548)
T ss_dssp TTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHS-TTCCEEEET
T ss_pred CCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCC-CCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999988765544322111 223455555
Q ss_pred cCCChhhHHHHhhcCceEeeHHHHHHcccCCCCCCCCC------CCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhh
Q 010566 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK------KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVK 255 (507)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~ 255 (507)
+..... .....|+++.............. .++++++++|||||||.||+|.++|.++...+....
T Consensus 155 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~ 225 (548)
T 2d1s_A 155 DSKVDY---------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225 (548)
T ss_dssp TCSSCB---------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHT
T ss_pred CCcccc---------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhh
Confidence 432100 01234666655431110111111 238899999999999999999999999998887744
Q ss_pred hhhhhccccCCCCcEEEEecChhHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHH
Q 010566 256 CLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333 (507)
Q Consensus 256 ~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~ 333 (507)
..+ ...++..+|++++.+|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|++++.+++.
T Consensus 226 ~~~--~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-- 300 (548)
T 2d1s_A 226 DPI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS-- 300 (548)
T ss_dssp CTT--TSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC--
T ss_pred chh--hccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC--
Confidence 321 0136778999999999999999977 45557 9999999875 999999999999999999999999988651
Q ss_pred HHhhccchhHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCc
Q 010566 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAH 412 (507)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~ 412 (507)
+.....++ +++|.+++||+++++++.+.+.+.+ +..
T Consensus 301 -----------------------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 337 (548)
T 2d1s_A 301 -----------------------------------ELLNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPG 337 (548)
T ss_dssp -----------------------------------SCGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSC
T ss_pred -----------------------------------cccccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCc
Confidence 11111112 3899999999999999999999988 688
Q ss_pred EEeecccccCccceeccCCCCCccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc
Q 010566 413 VLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492 (507)
Q Consensus 413 v~~~YG~tE~~~~~~~~~~~~~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~ 492 (507)
+++.||+||++.+++..... ....+++|+|+|+++++|+|.++++.+ +.|+.|||+|+|++++.|||++|+.|.+.|
T Consensus 338 i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~--~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 414 (548)
T 2d1s_A 338 VRQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKKSL--GPNRRGEVCVKGPMLMKGYVNNPEATKELI 414 (548)
T ss_dssp CEEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTCCBC--CTTCCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred eeeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcCccC--CCCCCeEEEECCHHHhhhhcCChHHhhhcc
Confidence 99999999998877664433 234589999999999999994345444 456999999999999999999999999999
Q ss_pred -ccCceeec-cEEEecC
Q 010566 493 -VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 493 -~dgw~~TG-lg~~d~d 507 (507)
.+|||+|| +|++|+|
T Consensus 415 ~~~g~~~TGDl~~~~~d 431 (548)
T 2d1s_A 415 DEEGWLHTGDIGYYDEE 431 (548)
T ss_dssp CTTSCEEEEEEEEECTT
T ss_pred cCCcEEEccCEEEEcCC
Confidence 79999999 9999986
No 10
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.6e-57 Score=470.07 Aligned_cols=388 Identities=16% Similarity=0.200 Sum_probs=304.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeecc---CCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhH
Q 010566 41 PGMESCWDVFRMAVERNPNNRMLGQREIVD---GKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~---~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~ 117 (507)
....|+.++|+++++++||++|+++. + +.++.++++||+||.++++++|++|+++|+ +||+|+|+++|+++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~ 96 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFM---DYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYV 96 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEE---ETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEe---cccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHH
Confidence 34579999999999999999999987 4 334556889999999999999999999996 9999999999999999
Q ss_pred HHHHHHHhcCCEEEecCC---CCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCC-CccEEEEecCCChhhHHHHh
Q 010566 118 IGMEACNALGLHCVPLYD---TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTE-HLKTIVSFSKVKPEQREEIE 193 (507)
Q Consensus 118 ~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~ 193 (507)
++++||+++|++++||++ .++.+++.++++.++++++|++......+......... ....++.++.
T Consensus 97 ~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 166 (480)
T 3t5a_A 97 VAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL---------- 166 (480)
T ss_dssp HHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG----------
T ss_pred HHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc----------
Confidence 999999999999999999 77899999999999999999999887766655432211 1112222221
Q ss_pred hcCceEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCC------
Q 010566 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS------ 267 (507)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~------ 267 (507)
+.... ..........++++++|+|||||||.||+|.++|.++++.+..+...+ .+..
T Consensus 167 -----------~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~ 229 (480)
T 3t5a_A 167 -----------LDLDA-PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPP 229 (480)
T ss_dssp -----------SCTTC-C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCT
T ss_pred -----------ccccc-ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCC
Confidence 11111 111223345678999999999999999999999999999888866544 4455
Q ss_pred CcEEEEecChhHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccch
Q 010566 268 EDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341 (507)
Q Consensus 268 ~d~~~~~~pl~h~~g~~~-~~~~l~~G~~vvl~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~ 341 (507)
++++++++|++|.+++.. ++.+++.|+++++.+. ++..+++.++++++| +.++|+++..++......
T Consensus 230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~------ 302 (480)
T 3t5a_A 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD------ 302 (480)
T ss_dssp TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT------
T ss_pred CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc------
Confidence 899999999999999875 7888999999999862 889999999999999 889999988876532100
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC------CcEEe
Q 010566 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQ 415 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~ 415 (507)
+.....++ ++||.+++||+++++++.+.+.+.++ ..+++
T Consensus 303 ---------------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 347 (480)
T 3t5a_A 303 ---------------------------DDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRP 347 (480)
T ss_dssp ---------------------------GGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEE
T ss_pred ---------------------------ccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccc
Confidence 00111111 48999999999999999999999874 47999
Q ss_pred ecccccCccceeccCCCC------------------------CccCCccCccccCeeEEEeecCC-CccccCCCCCCceE
Q 010566 416 GYGLTETCAGTFVSLPNE------------------------MSMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEV 470 (507)
Q Consensus 416 ~YG~tE~~~~~~~~~~~~------------------------~~~~~svG~p~pg~~i~ivd~~~-~~~~~~~~g~~Gel 470 (507)
.||+||++..++...... .....++|+|++ ++++|+| ++ ++.++ .|+.|||
T Consensus 348 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g~~~~--~g~~GEl 423 (480)
T 3t5a_A 348 SYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTCIECP--DGTVGEI 423 (480)
T ss_dssp EEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTTEECC--TTBCEEE
T ss_pred cccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCCcCCC--CCCEEEE
Confidence 999999998877665432 123468999999 9999999 65 45444 5599999
Q ss_pred EEecCcccccccCCchhhhhhc------------ccCceeec-cEEEe
Q 010566 471 CVKGSTVFSGYYKREDLTKEVM------------VDGWFHTG-MGVWE 505 (507)
Q Consensus 471 ~v~g~~v~~gY~~~~~~~~~~~------------~dgw~~TG-lg~~d 505 (507)
+|+||+++.|||++|+.|++.| .+|||+|| +|++|
T Consensus 424 ~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d 471 (480)
T 3t5a_A 424 WVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT 471 (480)
T ss_dssp EEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE
T ss_pred EEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE
Confidence 9999999999999999999998 35699999 99997
No 11
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=5.7e-57 Score=468.90 Aligned_cols=382 Identities=20% Similarity=0.283 Sum_probs=314.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHH
Q 010566 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 121 (507)
...|+.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|+++++++++
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4579999999999999999999864 2 679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEee
Q 010566 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 201 (507)
||+++|++++|++|.++.+++.++++.++++++|++......+....... +....++.++.... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSL-GGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGC-SSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhccc-CCceEEEEcCCCCc--------------C
Confidence 99999999999999999999999999999999999998766544433222 55566666554211 1
Q ss_pred HHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHH
Q 010566 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (507)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~ 281 (507)
+.++...............++++++++|||||||.||+|.++|.++++.+..+...+ +++.+|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222111222334456789999999999999999999999999999988865544 788999999999999999
Q ss_pred HHHHHHHHHH-cCCEEEEecCCHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhc
Q 010566 282 DRAIEEVFIS-NGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 282 g~~~~~~~l~-~G~~vvl~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
++...+.++. .|+.+++...++..+++.++++++|+++++|+++..+++..
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------------------------- 266 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA---------------------------- 266 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----------------------------
Confidence 9988766554 44555544459999999999999999999999999987631
Q ss_pred CCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcEEeecccccCccceeccCCCCCccCCc
Q 010566 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s 439 (507)
...++ +++|.++++|++ ++.+.+.+.+ ++.+++.||+||++++++....... ..+
T Consensus 267 -----------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 267 -----------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp -----------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred -----------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 00011 379999999987 8888888888 8999999999999987766554332 256
Q ss_pred cCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhcccCceeec-cEEEecC
Q 010566 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 440 vG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+|+|++|++++|+| ++++.++. |+.|||+|+|++++.|||++|+.+.+.|.+|||+|| +|++|+|
T Consensus 323 ~G~p~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~d 388 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDRPLPP--GEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDAD 388 (509)
T ss_dssp CCEECTTCEEEEEC-TTSCBCCT--TCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTT
T ss_pred ccccCCCcEEEEEC-CCCCCCCC--CCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCC
Confidence 99999999999999 87766554 599999999999999999999999999999999999 9999976
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=7.9e-57 Score=467.12 Aligned_cols=379 Identities=18% Similarity=0.237 Sum_probs=305.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHHH
Q 010566 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 122 (507)
|+|+.++|+++++++||++|+.+. +.+ +++||+||.++++++|++|+++|+++||+|+++++|+++++++++|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999864 322 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEe--cCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010566 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV--EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
|+++|++++|++|.++.+++.++++.++++++|+ +......+..... ..+ ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS----GAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC----CCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc----cce-eE---------------------
Confidence 9999999999999999999999999999999999 6654443312211 111 22
Q ss_pred eHHHHHHccc----CCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccC--CCCcEEEEe
Q 010566 201 SWDEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSY 274 (507)
Q Consensus 201 ~~~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~~~~ 274 (507)
.++++..... ..........++++++++|||||||.||+|.++|+++...+..+...+ ++ ..++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 2223222110 111112344678999999999999999999999999998887754433 55 788999999
Q ss_pred cChhHHHHHH-HHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 010566 275 LPLAHIFDRA-IEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (507)
Q Consensus 275 ~pl~h~~g~~-~~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (507)
+|++|.+++. .++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+++......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------- 266 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------- 266 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence 9999999985 47888999999999876 99999999999999999999999999875321000
Q ss_pred HHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCC
Q 010566 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432 (507)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~ 432 (507)
... ..+++|.+++||+++++++.+.+++.++..+++.||+||++. +....
T Consensus 267 -------------------~~~--------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~-- 316 (504)
T 1t5h_X 267 -------------------SSL--------KLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR-- 316 (504)
T ss_dssp -------------------CCC--------CCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--
T ss_pred -------------------ccc--------cCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--
Confidence 000 013899999999999999999999999999999999999943 22222
Q ss_pred CCccCCccCccccCeeEEEeecCCC-ccccCCCCCCceEEEe-cCcccccccCCchhhhhhcccCceeec-cEEEecC
Q 010566 433 EMSMIGTVGPPVPNVDVCLESVPEM-EYDALSSTPRGEVCVK-GSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 433 ~~~~~~svG~p~pg~~i~ivd~~~~-~~~~~~~g~~Gel~v~-g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
....+++|.|.++++++|+| +++ ...+++.|+.|||+|+ |+.++.||+++|+.+.+.|.||||+|| +|++|+|
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~d 392 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPE 392 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTT
T ss_pred -CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCC
Confidence 22348899999999999999 655 1234445699999999 999999999999999999999999999 9999986
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.6e-56 Score=469.11 Aligned_cols=394 Identities=16% Similarity=0.165 Sum_probs=323.5
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCch
Q 010566 41 PGMESCWDVFRMAVER-----NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCP 114 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~-----~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~ 114 (507)
..++++.++|++++++ +||++|+++. +. ++..+.+||+||.++++++|++|++. |+++||+|+|+++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456778999999999 9999999976 42 22347899999999999999999998 9999999999999999
Q ss_pred hhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhh
Q 010566 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (507)
Q Consensus 115 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 194 (507)
+++++++||+++|++++|+++.++.+++.++++.++++++|++.+....+....... +.++.++.++....
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASEC-PSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGC-TTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcC-CceeEEEEecccCc--------
Confidence 999999999999999999999999999999999999999999988766554433222 44556666654211
Q ss_pred cCceEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHH--HHhhhhhhhhhccccCCCCcEEE
Q 010566 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT--FIAGVKCLLESVNEKLTSEDVYV 272 (507)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~~ 272 (507)
.....++++...... ........++++++|+|||||||.||+|.++|. ++. ..... ...++..+|+++
T Consensus 182 --~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~------~~~~~~~~d~~~ 251 (570)
T 3c5e_A 182 --DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA------GWTGLQASDIMW 251 (570)
T ss_dssp --TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT------TTTSCCTTCEEE
T ss_pred --cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh------hhcCCCCCceEE
Confidence 013356666654322 122234567899999999999999999999999 544 33331 234678899999
Q ss_pred EecChhHHHHHHH-HHHHHHcCCEEEEec---CCHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHH
Q 010566 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (507)
Q Consensus 273 ~~~pl~h~~g~~~-~~~~l~~G~~vvl~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (507)
+.+|++|.+++.. ++.++..|+++++.+ .++..+++.|+++++|+++++|++++.+++.
T Consensus 252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------- 314 (570)
T 3c5e_A 252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ----------------- 314 (570)
T ss_dssp ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS-----------------
T ss_pred EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc-----------------
Confidence 9999999999874 788899999999985 3999999999999999999999999988641
Q ss_pred HHHHHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceec
Q 010566 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (507)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~ 428 (507)
. .... ..+++|.+++||+++++++.+.+.+.+|+.+++.||+||++..++.
T Consensus 315 --------------------~-~~~~--------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 365 (570)
T 3c5e_A 315 --------------------D-LSSY--------KFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV 365 (570)
T ss_dssp --------------------C-TTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred --------------------c-cccc--------ccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence 0 0000 1148999999999999999999999889999999999999876655
Q ss_pred cCCCCCccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEe-----cCcccccccCCchhhhhhcccCceeec-cE
Q 010566 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK-----GSTVFSGYYKREDLTKEVMVDGWFHTG-MG 502 (507)
Q Consensus 429 ~~~~~~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~-----g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg 502 (507)
.... ...++++|+|+||++++|+| ++++.++. |+.|||+|+ |++++.|||++|+.|.+.|.+|||+|| +|
T Consensus 366 ~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~~~~--G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg 441 (570)
T 3c5e_A 366 SKTM-KIKPGYMGTAASCYDVQIID-DKGNVLPP--GTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441 (570)
T ss_dssp CTTS-CCCTTCCCEECTTCCEEEEC-TTSCBCCT--TCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEE
T ss_pred Cccc-ccCCCcccccCCCceEEEEC-CCCCCCCC--CCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeE
Confidence 4432 33458999999999999999 88776654 599999999 999999999999999999999999999 99
Q ss_pred EEecC
Q 010566 503 VWEQL 507 (507)
Q Consensus 503 ~~d~d 507 (507)
++|+|
T Consensus 442 ~~d~d 446 (570)
T 3c5e_A 442 IKDED 446 (570)
T ss_dssp EECTT
T ss_pred EEcCC
Confidence 99986
No 14
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.3e-56 Score=472.22 Aligned_cols=373 Identities=17% Similarity=0.175 Sum_probs=308.2
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHH
Q 010566 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (507)
Q Consensus 39 ~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~ 118 (507)
..+...++.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|++++++
T Consensus 70 ~~~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 140 (570)
T 4gr5_A 70 RAPAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVV 140 (570)
T ss_dssp CCCCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred cCCccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence 3456789999999999999999999864 2 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010566 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 119 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
+++||+++|++++|++|.++.+++.++++.++++++|++......+ .....+...+..
T Consensus 141 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~-------------- 198 (570)
T 4gr5_A 141 ALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEA-------------- 198 (570)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC----------------
T ss_pred HHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeeccc--------------
Confidence 9999999999999999999999999999999999999997643321 122222211110
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChh
Q 010566 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~ 278 (507)
. .............++++++|+|||||||.||+|.++|.++.+.... .....++.+|++++.+|++
T Consensus 199 -------~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~------~~~~~~~~~d~~l~~~p~~ 264 (570)
T 4gr5_A 199 -------A-SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG------QDYAGFGPDEVFLQCSPVS 264 (570)
T ss_dssp -------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS------CCSSCCSTTCEEEECSCTT
T ss_pred -------c-ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh------hhhcCCCCCCEEEEecCcc
Confidence 0 0001112233456799999999999999999999999999876654 2233678899999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 010566 279 HIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 279 h~~g~~~~~~~l~~G~~vvl~~~---~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
|..+...++.+++.|+++++.+. ++..+++.|+++++|++.++|++++.+++....
T Consensus 265 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------------------- 323 (570)
T 4gr5_A 265 WDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE--------------------- 323 (570)
T ss_dssp SSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---------------------
T ss_pred HHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---------------------
Confidence 87777778889999999999763 899999999999999999999999998653110
Q ss_pred hhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcEEeecccccCccceeccCCCC-
Q 010566 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE- 433 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~- 433 (507)
++ ++||.+++||++++.++.+.+.+.+ ++.+++.||+||++++++......
T Consensus 324 -------------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~ 376 (570)
T 4gr5_A 324 -------------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAG 376 (570)
T ss_dssp -------------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGG
T ss_pred -------------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccc
Confidence 01 3899999999999999999888877 789999999999988766543322
Q ss_pred --CccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc-cc--------Cceeec-c
Q 010566 434 --MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD--------GWFHTG-M 501 (507)
Q Consensus 434 --~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~d--------gw~~TG-l 501 (507)
.....++|+|++|++++|+| ++++.++. |+.|||+|+||+++.|||++|+.|+++| .+ |||+|| +
T Consensus 377 ~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~--G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDl 453 (570)
T 4gr5_A 377 DLSGTALPIGVPLAGKRAYVLD-DDLKPAAN--GALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDL 453 (570)
T ss_dssp GTTSSSCCCBEECTTEEEEEEC-TTSCBCCT--TCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEE
T ss_pred ccCCCccccceeeCCCEEEEEC-CCCCCCCC--CCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCe
Confidence 22346799999999999999 87776655 5999999999999999999999999999 43 699999 9
Q ss_pred EEEecC
Q 010566 502 GVWEQL 507 (507)
Q Consensus 502 g~~d~d 507 (507)
|++|+|
T Consensus 454 g~~d~d 459 (570)
T 4gr5_A 454 ARRRAD 459 (570)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999986
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2e-56 Score=477.02 Aligned_cols=406 Identities=14% Similarity=0.215 Sum_probs=324.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHHH
Q 010566 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 122 (507)
.+++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 357889999999999999999986 43344558899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCCh---------hHHhhcCCCCC-CCccEEEEecCCChhhHHHH
Q 010566 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTT-EHLKTIVSFSKVKPEQREEI 192 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~ 192 (507)
|+++|++++|+++.++.+++.++++.+++++||+++... ..+........ ..+..+++++.......
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---
Confidence 999999999999999999999999999999999987532 11222221110 23456666653211000
Q ss_pred hhcCceEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhh-hhhhhhhccccCCCCcEE
Q 010566 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVY 271 (507)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~ 271 (507)
........|+++...... ........++++++|+|||||||.||+|+++|.+++..... +... +++..+|++
T Consensus 229 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~d~~ 301 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYV-----FDYHPGDIY 301 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHH-----TTCCTTCEE
T ss_pred -ccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHh-----cCCCCCCEE
Confidence 000123568887754321 12233456789999999999999999999999998876643 2222 367889999
Q ss_pred EEecChhHHHHHH-HHHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHH
Q 010566 272 VSYLPLAHIFDRA-IEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (507)
Q Consensus 272 ~~~~pl~h~~g~~-~~~~~l~~G~~vvl~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (507)
++.+|++|.+++. .++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 302 l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------- 371 (652)
T 1pg4_A 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA---------- 371 (652)
T ss_dssp EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG----------
T ss_pred EEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc----------
Confidence 9999999999995 47889999999999863 7899999999999999999999999886421100
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC---CcEEeecccccC
Q 010566 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTET 422 (507)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE~ 422 (507)
....+ .++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 372 -------------------------~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 418 (652)
T 1pg4_A 372 -------------------------IEGTD--------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 418 (652)
T ss_dssp -------------------------TTTCC--------CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred -------------------------cccCC--------cCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccc
Confidence 01111 148999999999999999999999887 899999999999
Q ss_pred ccceeccCCCC-CccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEec--CcccccccCCchhhhhhc---ccCc
Q 010566 423 CAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGW 496 (507)
Q Consensus 423 ~~~~~~~~~~~-~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~---~dgw 496 (507)
++.++...+.. ...++++|+|++|++++|+| ++++.++. |+.|||+|+| |+++.|||++++.+.+.+ .+||
T Consensus 419 ~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~--g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~ 495 (652)
T 1pg4_A 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEG--ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 495 (652)
T ss_dssp SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCS--SEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred ccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCC--CceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCE
Confidence 87766654432 34468999999999999999 88776654 5899999999 799999999999888876 3899
Q ss_pred eeec-cEEEecC
Q 010566 497 FHTG-MGVWEQL 507 (507)
Q Consensus 497 ~~TG-lg~~d~d 507 (507)
|+|| +|++|+|
T Consensus 496 y~TGDlg~~d~d 507 (652)
T 1pg4_A 496 YFSGDGARRDED 507 (652)
T ss_dssp EEEEEEEEECTT
T ss_pred EECCcEEEEcCC
Confidence 9999 9999986
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.1e-56 Score=466.82 Aligned_cols=393 Identities=17% Similarity=0.209 Sum_probs=311.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHH
Q 010566 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 120 (507)
..++++.++|+++++ +||++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 455679999999999 9999999853 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCc-cEEEEecCCChhhHHHHhhcCceE
Q 010566 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGLAV 199 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~ 199 (507)
+||+++|++++|+++.++.+++.++++.++++++|++......+....... +.. ..+++++..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------cccc
Confidence 999999999999999999999999999999999999987655443322111 222 344444432110 0012
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHH-HHHHhhhhhhhhhccccCCCCcEEEEecChh
Q 010566 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~ 278 (507)
..++++...... ........++++++++|||||||.||+|.++|.++ ...... .....++..+|++++.+|++
T Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~-----~~~~~~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 162 PLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELY-----AKPILGIAENDVVFSAAKLF 235 (529)
T ss_dssp CBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHT-----CCCCCCCCTTCEEEESSCTT
T ss_pred cchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHH-----hhhccCCCCCcEEEEeecHH
Confidence 356666553221 22233456789999999999999999999999999 555544 23334678899999999999
Q ss_pred HHHHHHH-HHHHHHcCCEEEEec--CCHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 010566 279 HIFDRAI-EEVFISNGAAIGFWR--GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 279 h~~g~~~-~~~~l~~G~~vvl~~--~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
|.+++.. ++.++..|+++++.+ .++..+++.+.++++|+++++|+++..++....
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 293 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN---------------------- 293 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT----------------------
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc----------------------
Confidence 9999876 567899999999873 399999999999999999999999988754100
Q ss_pred hhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCCCCc
Q 010566 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 435 (507)
.+... + .++|.+++||+++++++.+.+++.+|+++++.||+||++.+++.+.... .
T Consensus 294 ------------~~~~~--~---------~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~ 349 (529)
T 2v7b_A 294 ------------LPARA--D---------VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-V 349 (529)
T ss_dssp ------------CCCGG--G---------CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-C
T ss_pred ------------ccccc--C---------CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-C
Confidence 00000 0 2799999999999999999999999999999999999977666554443 3
Q ss_pred cCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhcccCceeec-cEEEecC
Q 010566 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
..+++|+|+||++++|+| ++++.++. |+.|||+|+|++++.|||++++.+.+.|.+|||+|| +|++|+|
T Consensus 350 ~~~~~G~p~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~ 419 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRD-EAGHAVPD--GEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPN 419 (529)
T ss_dssp CTTSCCEECTTCEEEEEC-TTSCBCCT--TSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTT
T ss_pred ccCCcccCCCCCEEEEEC-CCCCCCCC--CCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCC
Confidence 448999999999999999 88776654 599999999999999999999999999999999999 9999976
No 17
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.2e-56 Score=465.16 Aligned_cols=382 Identities=23% Similarity=0.313 Sum_probs=306.1
Q ss_pred HHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHHHHHhcC
Q 010566 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127 (507)
Q Consensus 48 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 127 (507)
++|++.++++||++|+.... +++ +++||+||.++++++|++|+++|+++||+|+++++|+++++++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~--~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET--AAG----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE--TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEec--CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 57889999999999998641 122 579999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHH
Q 010566 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQ 207 (507)
Q Consensus 128 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 207 (507)
++++|++|.++.+++.++++.++++++|++......+....... . ..+..++.... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999976543322211110 1 13333332111 11222222
Q ss_pred cccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHH-H
Q 010566 208 LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-E 286 (507)
Q Consensus 208 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~ 286 (507)
.. ..........++++++++|||||||.||+|.++|.++.+.+..+...+ +++.+|++++.+|++|.+++.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 112223345679999999999999999999999999999988865544 7889999999999999999765 6
Q ss_pred HHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhcCCCCC
Q 010566 287 EVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365 (507)
Q Consensus 287 ~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (507)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++..
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~--------------------------------- 260 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSP--------------------------------- 260 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCT---------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCC---------------------------------
Confidence 778999999988876 9999999998 8999999999999886411
Q ss_pred CCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCCCCccCCccCcccc
Q 010566 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445 (507)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~svG~p~p 445 (507)
.....+ .+++|.+++||+++++++.+.+.+.++.++++.||+||++..+... ......++++|+|+|
T Consensus 261 ----~~~~~~--------~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~-~~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 261 ----RLTKET--------TGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNP-YDGDRVPGAVGPALP 327 (503)
T ss_dssp ----TCSTTT--------TTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCC-SSSCCCTTEEEEBCT
T ss_pred ----Cccccc--------hhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccC-CCCCCcCCccccCCC
Confidence 011111 1379999999999999999999999999999999999998765433 333444589999999
Q ss_pred CeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc-ccCceeec-cEEEecC
Q 010566 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 446 g~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
|++++|+|.++++.+ +.|+.|||+|+||+++.|||++|+.+.+.| .||||+|| +|++|+|
T Consensus 328 ~~~~~i~d~~~g~~~--~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~d 389 (503)
T 4fuq_A 328 GVSARVTDPETGKEL--PRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDER 389 (503)
T ss_dssp TCEEEEECTTTCCBC--CTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTT
T ss_pred CeEEEEEECCCCCCC--cCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCC
Confidence 999999994444444 456999999999999999999999999999 69999999 9999986
No 18
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=6.5e-56 Score=473.33 Aligned_cols=408 Identities=17% Similarity=0.209 Sum_probs=325.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchhhHHHHH
Q 010566 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~n~~~~~~~~l 121 (507)
.+++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++|
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 368899999999999999999986 433445578999999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChh---------HHhhcCCCCCCCccEEEEecCCChhhHHHH
Q 010566 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 192 (507)
||+++|++++|+++.++.+++.++++.+++++||+++.... .+.+..... +.++.+++++.......
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~--- 233 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET-PGVRHVLVYRKTNNPSV--- 233 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC-TTCCEEEEECSSCCSSC---
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhC-CCCceEEEEecCCCCcc---
Confidence 99999999999999999999999999999999999876421 222333222 45667777654211000
Q ss_pred hhcCceEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 010566 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (507)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 272 (507)
.........|+++..... .........++++++|+|||||||.||+|+++|.+++....... ...+++..+|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~----~~~~~~~~~d~~~ 308 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTM----RYTFDTHQEDVFF 308 (663)
T ss_dssp CCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHH----HHHSCCCSSCEEE
T ss_pred ccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHH----HHhcCCCCCcEEE
Confidence 000112456777765432 12223345678999999999999999999999999887664321 1123678899999
Q ss_pred EecChhHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHH
Q 010566 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (507)
Q Consensus 273 ~~~pl~h~~g~~~-~~~~l~~G~~vvl~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (507)
+.+|++|..+... ++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.+.+....
T Consensus 309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------ 376 (663)
T 1ry2_A 309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS------------ 376 (663)
T ss_dssp ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT------------
T ss_pred EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc------------
Confidence 9999999999854 7889999999999863 789999999999999999999999887531000
Q ss_pred HHHHHHHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC---CcEEeecccccCc
Q 010566 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETC 423 (507)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~YG~tE~~ 423 (507)
..+..++ ++||.+++||+++++++.+++.+.+| +++++.||+||++
T Consensus 377 -----------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~ 425 (663)
T 1ry2_A 377 -----------------------YIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG 425 (663)
T ss_dssp -----------------------SSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred -----------------------ccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcccc
Confidence 0011112 48999999999999999999999887 8999999999998
Q ss_pred cceeccCC--CCCccCCccCccccCeeEEEeecC-CCccccCCCCCCceEEEec--CcccccccCCchhhhhhc-c--cC
Q 010566 424 AGTFVSLP--NEMSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM-V--DG 495 (507)
Q Consensus 424 ~~~~~~~~--~~~~~~~svG~p~pg~~i~ivd~~-~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~-~--dg 495 (507)
+.++...+ .....++++|+|++|++++|+| + +++.++. .|+.|||+|+| |+++.|||++++.+.+.| . +|
T Consensus 426 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g 503 (663)
T 1ry2_A 426 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG 503 (663)
T ss_dssp SCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT
T ss_pred CeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC
Confidence 77666543 2234568999999999999999 6 6666544 25899999999 589999999999988887 3 89
Q ss_pred ceeec-cEEEecC
Q 010566 496 WFHTG-MGVWEQL 507 (507)
Q Consensus 496 w~~TG-lg~~d~d 507 (507)
||+|| +|++|+|
T Consensus 504 ~y~TGDlg~~d~d 516 (663)
T 1ry2_A 504 YYFTGDGAAKDKD 516 (663)
T ss_dssp SEEEEEEEEECTT
T ss_pred EEEcCCEEEEcCC
Confidence 99999 9999986
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=8.7e-56 Score=464.46 Aligned_cols=375 Identities=18% Similarity=0.245 Sum_probs=304.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhh
Q 010566 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (507)
Q Consensus 37 ~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~ 116 (507)
....+...|+.++|+++++++||++|+++. + +.+||+||.++++++|++|+++|+++||+|+|+++|++++
T Consensus 32 ~~~~~~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 102 (563)
T 1amu_A 32 KAEYPRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL 102 (563)
T ss_dssp CCCCCTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH
Confidence 333455679999999999999999999853 2 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcC
Q 010566 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (507)
Q Consensus 117 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 196 (507)
+++++||+++|++++|++|.++.+++.++++.++++++|++......+..... ...+..++...
T Consensus 103 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~----------- 166 (563)
T 1amu_A 103 FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDT----------- 166 (563)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCST-----------
T ss_pred HHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchh-----------
Confidence 99999999999999999999999999999999999999999765544332211 11232222110
Q ss_pred ceEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010566 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (507)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p 276 (507)
+.. . ..........++++++++|||||||.||+|.++|.++.+.+..+... ++++.+|++++.+|
T Consensus 167 --------~~~-~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-----~~~~~~d~~l~~~p 231 (563)
T 1amu_A 167 --------IKI-R-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENS-----LNVTEKDRIGQFAS 231 (563)
T ss_dssp --------TTT-S-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHT-----SCCCTTCEEEECSC
T ss_pred --------hcc-c-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHh-----cCCCCCCEEEEeCC
Confidence 000 0 01111223467899999999999999999999999999888775443 37889999999999
Q ss_pred hhHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 010566 277 LAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (507)
Q Consensus 277 l~h~~g~~~~~~~l~~G~~vvl~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (507)
++|..++..++.+++.|+++++.+. ++..+++.+.++++|+++++|+++..+...
T Consensus 232 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------- 290 (563)
T 1amu_A 232 ISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------------------- 290 (563)
T ss_dssp TTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT---------------------
T ss_pred ccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc---------------------
Confidence 9999998888889999999998763 889999999999999999999998765210
Q ss_pred HHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCC
Q 010566 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432 (507)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~ 432 (507)
..+++|.+++||+++++++.+.+.+ .+.+++.||+||++.+++.....
T Consensus 291 ------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~ 338 (563)
T 1amu_A 291 ------------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVAT 338 (563)
T ss_dssp ------------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECC
T ss_pred ------------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecc
Confidence 0137999999999999999999887 47899999999998776654432
Q ss_pred C--CccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhcc-------cCceeec-cE
Q 010566 433 E--MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTG-MG 502 (507)
Q Consensus 433 ~--~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~-------dgw~~TG-lg 502 (507)
. .....++|+|+||++++|+| ++++.++. |+.|||+|+||+++.|||++|+.|++.|. +|||+|| +|
T Consensus 339 ~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg 415 (563)
T 1amu_A 339 KETIGHSVPIGAPIQNTQIYIVD-ENLQLKSV--GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQA 415 (563)
T ss_dssp SSCCCSSCCCBEECTTEEEEEEC-TTSCBCCT--TCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEE
T ss_pred cccCCCCCcccceeCCCEEEEEC-CCcCCCCC--CCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEE
Confidence 2 22447899999999999999 87776654 58999999999999999999999999993 2499999 99
Q ss_pred EEecC
Q 010566 503 VWEQL 507 (507)
Q Consensus 503 ~~d~d 507 (507)
++|+|
T Consensus 416 ~~d~d 420 (563)
T 1amu_A 416 RWLSD 420 (563)
T ss_dssp EECTT
T ss_pred EEcCC
Confidence 99986
No 20
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.1e-55 Score=466.93 Aligned_cols=390 Identities=15% Similarity=0.190 Sum_probs=319.7
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHH
Q 010566 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 121 (507)
...|+.++|+++++ ||++|+++. + +++||+||.++++++|++|++.|+++|++|+++++|+++++++++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~-----~----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG-----E----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET-----T----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC-----C----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999854 2 679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChh----HHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCc
Q 010566 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
||+++|++++|++|..+.+++.++++.+++++++++..... ..........+....+...+....
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999986531 111110011134444544443221
Q ss_pred eEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010566 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl 277 (507)
..+.+....... ........++++++++|||||||.||+|.++|.++.+.+......+ ++..++++++++|+
T Consensus 163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~ 234 (617)
T 3rg2_A 163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA 234 (617)
T ss_dssp --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence 123444433321 2223445678999999999999999999999999999998866555 78899999999999
Q ss_pred hHHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 010566 278 AHIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (507)
Q Consensus 278 ~h~~g~~~--~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (507)
+|.+++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+++.........
T Consensus 235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~--------------- 299 (617)
T 3rg2_A 235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRA--------------- 299 (617)
T ss_dssp TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTT---------------
T ss_pred hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccc---------------
Confidence 99999875 7888999999999875 89999999999999999999999999876433221100
Q ss_pred HhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCCCC
Q 010566 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434 (507)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~ 434 (507)
..+++|.+++||+++++++.+.+.+.+++++++.||+||++..++.......
T Consensus 300 ----------------------------~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 300 ----------------------------QLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp ----------------------------TTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred ----------------------------cCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence 0138999999999999999999999899999999999999865554433333
Q ss_pred ccCCccCccc-cCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc-ccCceeec-cEEEecC
Q 010566 435 SMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 435 ~~~~svG~p~-pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
....++|+|+ ++++++|+| ++++.++.| +.|||+|+|++++.||+++|+.|.++| .+|||+|| +|++|+|
T Consensus 352 ~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~d 424 (617)
T 3rg2_A 352 KIIHTQGYPMCPDDEVWVAD-AEGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE 424 (617)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTT
T ss_pred ccccCCCccCCCCceEEEEC-CCCCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCC
Confidence 3346899997 788999999 888766554 999999999999999999999999999 89999999 9999976
No 21
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.7e-55 Score=464.70 Aligned_cols=370 Identities=16% Similarity=0.132 Sum_probs=305.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHH
Q 010566 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 120 (507)
....|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++|++|+|+++|++++++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45689999999999999999999864 3 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010566 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
+||+++|++++||+|.++.+++.++++.++++++|++....... .....+ .
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~-------------------- 145 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-P-------------------- 145 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-E--------------------
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-e--------------------
Confidence 99999999999999999999999999999999999765432211 111111 0
Q ss_pred eHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHH
Q 010566 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~ 280 (507)
+.... ........+...++++++++|||||||.||+|.++|.++.+.+.. .. ...+..++++++.+|++|.
T Consensus 146 -~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~-----~~~~~~~d~~l~~~p~~~~ 216 (620)
T 4dg8_A 146 -VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QS-----FLAFAPQMRFLVNSPLSFD 216 (620)
T ss_dssp -GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CG-----GGTTCTTCEEEECSCTTST
T ss_pred -eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HH-----hhCCCCCCEEEEECccCHH
Confidence 10000 001112233446799999999999999999999999999887655 22 2367889999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh
Q 010566 281 FDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (507)
Q Consensus 281 ~g~~~~~~~l~~G~~vvl~~~---~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (507)
.++..++.+++.|+++++.+. ++..+++.++++++|+++++|++++.+++...
T Consensus 217 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------ 272 (620)
T 4dg8_A 217 AATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------ 272 (620)
T ss_dssp HHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------
T ss_pred HHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------
Confidence 999889999999999999752 89999999999999999999999998864200
Q ss_pred hhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcEEeecccccCccceeccCCCC---
Q 010566 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE--- 433 (507)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~--- 433 (507)
.++ +++|.+++||++++.++.+.+.+.+ ++++++.||+||++.+++......
T Consensus 273 ----------------~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 328 (620)
T 4dg8_A 273 ----------------DCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDL 328 (620)
T ss_dssp ----------------GGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGG
T ss_pred ----------------hhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccccc
Confidence 001 3899999999999998888877665 789999999999988766543322
Q ss_pred CccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc-cc-------Cceeec-cEEE
Q 010566 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD-------GWFHTG-MGVW 504 (507)
Q Consensus 434 ~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~d-------gw~~TG-lg~~ 504 (507)
.....++|+|++|++++|+| +++... ++.|+.|||+|+|++++.|||++|+.|+++| .+ +||+|| +|++
T Consensus 329 ~~~~~~iG~p~~~~~~~i~d-~~~~~~-~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 329 EEDDIPIGKAIAGTAVLLLD-EHGQEI-AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp GSSSCCCBEECTTEEEEEEC-TTSCBC-CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCCCCCceecccCcEEEEEC-ccCCCC-CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 23347899999999999999 777652 2356999999999999999999999999999 33 799999 9999
Q ss_pred ecC
Q 010566 505 EQL 507 (507)
Q Consensus 505 d~d 507 (507)
|+|
T Consensus 407 ~~d 409 (620)
T 4dg8_A 407 DEQ 409 (620)
T ss_dssp CTT
T ss_pred CCC
Confidence 986
No 22
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1e-55 Score=492.90 Aligned_cols=423 Identities=24% Similarity=0.307 Sum_probs=330.6
Q ss_pred CCCCCCCCCeeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHH
Q 010566 17 SGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR 96 (507)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~ 96 (507)
.++.+..+.+|++..... ..+...|+.++|+++++++||++|+++. +.+ +++||+||.++++++|++|+
T Consensus 38 ~~~~~~~~~~~~~~~~~~----~~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~ 106 (979)
T 3tsy_A 38 QSNNNNSDVIFRSKLPDI----YIPNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFH 106 (979)
T ss_dssp -------CCCBCCSSCCC----CCCTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCceeecCCCCC----CCCCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHH
Confidence 334455566777765432 2345689999999999999999999864 322 67999999999999999999
Q ss_pred HcCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCcc
Q 010566 97 TCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLK 176 (507)
Q Consensus 97 ~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 176 (507)
++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++.+++++||++......+...... .. .
T Consensus 107 ~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~-~ 183 (979)
T 3tsy_A 107 KLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--DG-V 183 (979)
T ss_dssp HTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--SC-C
T ss_pred HcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--CC-c
Confidence 99999999999999999999999999999999999999999999999999999999999998765443332211 11 1
Q ss_pred EEEEecCCChhhHHHHhhcCceEeeHHHHHHcccC--CCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhh
Q 010566 177 TIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV 254 (507)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~ 254 (507)
.++.++..... ........++++...... .........++++++|+|||||||.||+|.++|.+++..+...
T Consensus 184 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 257 (979)
T 3tsy_A 184 VIVCIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQ 257 (979)
T ss_dssp EEEECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHH
T ss_pred eEEEeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHH
Confidence 34444432110 001123455555443221 1222334578999999999999999999999999999887664
Q ss_pred hhhhhhccccCCCCcEEEEecChhHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHH
Q 010566 255 KCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332 (507)
Q Consensus 255 ~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~ 332 (507)
.... ...+.+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++..
T Consensus 258 ~~~~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 336 (979)
T 3tsy_A 258 VDGE-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS 336 (979)
T ss_dssp HCSS-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCG
T ss_pred HHhh-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCc
Confidence 3211 11335778999999999999999965 6778999999999876 9999999999999999999999999886521
Q ss_pred HHHhhccchhHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CC
Q 010566 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CA 411 (507)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~ 411 (507)
. ....++ +++|.+++||+++++++.+.+.+.+ ++
T Consensus 337 ~-------------------------------------~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~ 371 (979)
T 3tsy_A 337 E-------------------------------------TEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPNA 371 (979)
T ss_dssp G-------------------------------------GGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCTTC
T ss_pred c-------------------------------------ccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCCCC
Confidence 1 111111 3899999999999999999999988 89
Q ss_pred cEEeecccccCccceeccC----CCCCccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchh
Q 010566 412 HVLQGYGLTETCAGTFVSL----PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487 (507)
Q Consensus 412 ~v~~~YG~tE~~~~~~~~~----~~~~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~ 487 (507)
++++.||+||++.+++.+. .......+++|+|+||++++|+|.++++.+ +.|+.|||+|+|++++.|||++|+.
T Consensus 372 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~--~~g~~GEl~i~g~~v~~GY~~~p~~ 449 (979)
T 3tsy_A 372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSL--SRNQPGEICIRGHQIMKGYLNNPAA 449 (979)
T ss_dssp EEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBC--CTTCCEEEEEESTTSCSEETTCHHH
T ss_pred eEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCC--CCCCccEEEEECCCccccccCChhh
Confidence 9999999999998765542 122234589999999999999993334444 4569999999999999999999999
Q ss_pred hhhhc-ccCceeec-cEEEecC
Q 010566 488 TKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 488 ~~~~~-~dgw~~TG-lg~~d~d 507 (507)
|++.| .+|||+|| +|++|+|
T Consensus 450 t~~~f~~~g~~~TGDl~~~~~d 471 (979)
T 3tsy_A 450 TAETIDKDGWLHTGDIGLIDDD 471 (979)
T ss_dssp HHHHBCTTSCEEEEEEEEECTT
T ss_pred hhhhccCCCcEEcCCEEEEcCC
Confidence 99999 89999999 9999986
No 23
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.1e-55 Score=457.18 Aligned_cols=373 Identities=18% Similarity=0.253 Sum_probs=310.5
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCchhhHHHHHH
Q 010566 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA 122 (507)
+|+.++|+++++++||++|+++. + +++||+||.++++++|++|++. |.++|++|+++++|+++++++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47999999999999999999863 2 6799999999999999999984 888999999999999999999999
Q ss_pred HHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010566 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++.++.+++.++++.++++++|++....... .. .. .....+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~---~~----------------------~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VG---QQ----------------------IQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CC---CS----------------------SCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---cc---cc----------------------cceecH
Confidence 999999999999999999999999999999999976432111 00 00 123445
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHH
Q 010566 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g 282 (507)
+++...............++++++++|||||||.||+|.++|.++.+.+..+...+ .+..+|++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 56554332222223345678999999999999999999999999999988855544 7889999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhh
Q 010566 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 283 ~~~~~~~l~~G~~vvl~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
+..++.++..|+++++.+. ++..+++.++++++|+++++|+++..++..
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------------- 251 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD--------------------------- 251 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS---------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc---------------------------
Confidence 8888899999999999864 889999999999999999999999887541
Q ss_pred hcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcEEeecccccCccceeccCCCC----
Q 010566 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE---- 433 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---- 433 (507)
+.....+ .+++|.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++......
T Consensus 252 ----------~~~~~~~--------~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 252 ----------PGFSQDL--------LPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ----------TTCSTTT--------CTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ----------ccccccc--------CCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 1011111 13799999999999999999999988 889999999999988766543322
Q ss_pred CccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc--ccC--ceeec-cEEEec
Q 010566 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDG--WFHTG-MGVWEQ 506 (507)
Q Consensus 434 ~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~--~dg--w~~TG-lg~~d~ 506 (507)
.....++|+|+||++++|+| ++++.++. |+.|||+|+||+++.|||++|+.+++.| .+| ||+|| +|++++
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~d 388 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQPLPE--GEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQD 388 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSCBCCT--TCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEET
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCCCCCC--CCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEccC
Confidence 12346799999999999999 88776654 5999999999999999999999999999 355 89999 999953
No 24
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.7e-55 Score=458.14 Aligned_cols=373 Identities=19% Similarity=0.205 Sum_probs=304.7
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHHHH
Q 010566 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 123 (507)
+|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47999999999999999999864 3 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHH
Q 010566 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (507)
+++|++++|+++.++.+++.++++.++++++|++....... ... .++.. ..+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~------------------~~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSE------------------DNLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEET------------------HHHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceech------------------hhhh
Confidence 99999999999999999999999999999999985432110 001 11110 0122
Q ss_pred HHHHcc-cCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHH
Q 010566 204 EFLQLG-ENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 204 ~l~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g 282 (507)
++.... ...........++++++++|||||||.||+|.++|.++.+.+......+ ++..+|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 222111 1112223345678999999999999999999999999999988855544 7889999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhh
Q 010566 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 283 ~~~~~~~l~~G~~vvl~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
+..++.+++.|+++++.+. ++..+++.++++++|++.++|+++..++...
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------- 253 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA-------------------------- 253 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTST--------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc--------------------------
Confidence 8888899999999999874 8999999999999999999999998875310
Q ss_pred hcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcEEeecccccCccceeccCCCCC---
Q 010566 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEM--- 434 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~--- 434 (507)
.....++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++.......
T Consensus 254 -----------~~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 254 -----------SFSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp -----------TCSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred -----------cccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 0111111 3899999999999999999999988 7899999999999887765543321
Q ss_pred -ccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhcc----cCceeec-cEEEe
Q 010566 435 -SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTG-MGVWE 505 (507)
Q Consensus 435 -~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~----dgw~~TG-lg~~d 505 (507)
....++|+|+++++++|+| ++++.++. |+.|||+|+||+++.|||++|+.+++.|. +|||+|| +|+++
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~ 388 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE 388 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSCBCCT--TSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEE
T ss_pred ccCCCccccccCCcEEEEEC-CCCCCCCC--CCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEec
Confidence 2347899999999999999 88776655 48999999999999999999999999982 5699999 99984
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.3e-55 Score=457.08 Aligned_cols=375 Identities=18% Similarity=0.168 Sum_probs=307.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHHH
Q 010566 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 122 (507)
++|+.++|+++++++||++|+.+. + +++||+||.++++++|++|+++|+++||+|+++++|+++++++++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 2 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010566 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++.++.+++.++++.++++++|++.+....+ ... ....+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~----------------------~~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGI----------------------SLVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTS----------------------EEEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccC----------------------cccch
Confidence 999999999999999999999999999999999987643211 111 12233
Q ss_pred HHHHHccc--CCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHH
Q 010566 203 DEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 203 ~~l~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~ 280 (507)
.++..... ..........++++++++|||||||.||+|.++|.++++....+... ........+++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIED---AAFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHC---TTTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhc---cccCCCCCCeEEecCCccHH
Confidence 33322111 11122334567999999999999999999999999999877764432 12467888999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Q 010566 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 281 ~g~~~~~~~l~~G~~vvl~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
.++..++.++..|+++++.+. ++..+++.+.++++|++.++|+++..+....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------ 256 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSD------------------------ 256 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTST------------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhh------------------------
Confidence 988888889999999998764 8899999999999999999999998765310
Q ss_pred hhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh-CCcEEeecccccCccceeccCCCC--
Q 010566 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-- 433 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-- 433 (507)
.....++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++......
T Consensus 257 -------------~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 257 -------------DFCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp -------------TCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred -------------ccccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 0000111 3799999999999999999999988 899999999999988766543322
Q ss_pred --CccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc----ccCceeec-cEEEec
Q 010566 434 --MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM----VDGWFHTG-MGVWEQ 506 (507)
Q Consensus 434 --~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~----~dgw~~TG-lg~~d~ 506 (507)
....+++|+|+||++++|+| +++..++. |+.|||+|+||+++.|||++|+.+++.| .+|||+|| +|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGKELSS--GEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSCBCCT--TCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcCCCCC--CCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12347899999999999999 88776655 5899999999999999999999999998 35799999 999998
Q ss_pred C
Q 010566 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 393 d 393 (521)
T 3l8c_A 393 D 393 (521)
T ss_dssp S
T ss_pred C
Confidence 6
No 26
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.1e-54 Score=460.20 Aligned_cols=390 Identities=19% Similarity=0.228 Sum_probs=309.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHH
Q 010566 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 120 (507)
....|+.++|+++++++||++|+++. ++ +..+++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 45689999999999999999999986 42 23478999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEecCCCCC---HHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCc
Q 010566 121 EACNALGLHCVPLYDTLG---AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
+||+++|++++|++|..+ .+++.++++.++++++|++.+....+........+....+.
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~------------------ 144 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP------------------ 144 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE------------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc------------------
Confidence 999999999999999884 57899999999999999987655544322211111111111
Q ss_pred eEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010566 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl 277 (507)
....+++.... ..........++++++|+|||||||.||+|.++|.++++.+..+...+ ++..+|++++++|+
T Consensus 145 -~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 145 -AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp -EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred -eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 11122211111 112223455788999999999999999999999999999998865544 78899999999999
Q ss_pred hHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 010566 278 AHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351 (507)
Q Consensus 278 ~h~~g~~~-~~~~l~~G~~vvl~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (507)
+|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+++.+....
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------- 282 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--------------- 282 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------
Confidence 99999987 7888999999999864 78999999999999999999999998866321111
Q ss_pred HHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC------CcEEeecccccCccc
Q 010566 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGLTETCAG 425 (507)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~YG~tE~~~~ 425 (507)
....++ +++|.+++||+++++++.+.+.+.++ ..+++.||+||++++
T Consensus 283 -------------------~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 283 -------------------KEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp -------------------GTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred -------------------ccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 111111 48999999999999999999999873 479999999999987
Q ss_pred eeccCCC--------------------------CCccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccc
Q 010566 426 TFVSLPN--------------------------EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479 (507)
Q Consensus 426 ~~~~~~~--------------------------~~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~ 479 (507)
++..... ......++|+|+++ ++|+| +++ ..+++.|+.|||+|+||+++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAK 411 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCcccc
Confidence 7754321 11224689999998 88888 552 234445699999999999999
Q ss_pred cccCCchhhhhhccc-------C--ceeec-cEEEec
Q 010566 480 GYYKREDLTKEVMVD-------G--WFHTG-MGVWEQ 506 (507)
Q Consensus 480 gY~~~~~~~~~~~~d-------g--w~~TG-lg~~d~ 506 (507)
|||++|+.|++.|.+ | ||+|| +|++|+
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~dd 448 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE 448 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEET
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEEC
Confidence 999999999999943 5 99999 999994
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.8e-54 Score=455.93 Aligned_cols=394 Identities=18% Similarity=0.238 Sum_probs=314.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Q 010566 33 KDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVN 112 (507)
Q Consensus 33 ~~~~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n 112 (507)
...++...+.+.|+.++|+++++++|+.+++.. ..+..+++||+||.++++++|++|+++|+++||+|+++++|
T Consensus 10 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 83 (576)
T 3gqw_A 10 THSLPMRYADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAET 83 (576)
T ss_dssp ----CCCCSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCS
T ss_pred cCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 356677778899999999999999999777642 22334789999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhcCCEEEecCCCCC-------HHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCC
Q 010566 113 CPEWIIGMEACNALGLHCVPLYDTLG-------AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185 (507)
Q Consensus 113 ~~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 185 (507)
+++++++++||+++|++++|+++.++ .+++.++++.++++++|++.+....+....... +.. .+
T Consensus 84 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~-~~------- 154 (576)
T 3gqw_A 84 SSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PEL-HV------- 154 (576)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC-TTC-EE-------
T ss_pred cHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC-Ccc-ee-------
Confidence 99999999999999999999999998 789999999999999999987665544332211 111 11
Q ss_pred hhhHHHHhhcCceEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccC
Q 010566 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265 (507)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~ 265 (507)
...... ..............++++++++|||||||.||+|.++|.+++..+..+... ..++
T Consensus 155 --------------~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~~~ 215 (576)
T 3gqw_A 155 --------------LSHAWF-KALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD----GIKL 215 (576)
T ss_dssp --------------EEHHHH-HTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT----TSCC
T ss_pred --------------cchhhh-hcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc----ccCC
Confidence 111111 111112222334567899999999999999999999999999888775332 2468
Q ss_pred CCCcEEEEecChhHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhcc
Q 010566 266 TSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (507)
Q Consensus 266 ~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~vvl~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~ 339 (507)
..+|++++++|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|.+++.+.+.+....
T Consensus 216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--- 292 (576)
T 3gqw_A 216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKD--- 292 (576)
T ss_dssp CTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHH---
T ss_pred CCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccc---
Confidence 89999999999999999976 5677999999988763 88999999999999999999999987754221110
Q ss_pred chhHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHh------CCcE
Q 010566 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA------CAHV 413 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~------~~~v 413 (507)
... ...+++|.+++||+++++++.+.+.+.+ +..+
T Consensus 293 -------------------------------~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (576)
T 3gqw_A 293 -------------------------------LAE--------LDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTF 333 (576)
T ss_dssp -------------------------------HTT--------CCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGE
T ss_pred -------------------------------ccc--------CChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccc
Confidence 111 1124899999999999999999999987 6789
Q ss_pred EeecccccCccceeccCCCCC---------------------------ccCCccCccccCeeEEEeecCCCccccCCCCC
Q 010566 414 LQGYGLTETCAGTFVSLPNEM---------------------------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTP 466 (507)
Q Consensus 414 ~~~YG~tE~~~~~~~~~~~~~---------------------------~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~ 466 (507)
++.||+||++.+++....... ....++|+|+|+++++|+| ++++.++. |+
T Consensus 334 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~--g~ 410 (576)
T 3gqw_A 334 MPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAE--RV 410 (576)
T ss_dssp EEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCT--TB
T ss_pred cccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCC--CC
Confidence 999999999988776543211 0113799999999999999 88876655 48
Q ss_pred CceEEEecCcccccccCCchhhhhhcccCceeec-cEEEe
Q 010566 467 RGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWE 505 (507)
Q Consensus 467 ~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d 505 (507)
.|||+|+|++++.|||++++.+.+.+.+|||+|| +|+++
T Consensus 411 ~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~~ 450 (576)
T 3gqw_A 411 VGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYLL 450 (576)
T ss_dssp CEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEEE
T ss_pred eEEEEEeCccccccccCCccccccccCCCeeeccceEEEE
Confidence 9999999999999999999998887899999999 99984
No 28
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.8e-55 Score=453.05 Aligned_cols=383 Identities=21% Similarity=0.259 Sum_probs=298.8
Q ss_pred CHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHHHHH
Q 010566 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (507)
Q Consensus 45 tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 124 (507)
||.++|+++++++||++|+++. + +++||+||.++++++|++|++. +||+|+++++|+++++++++||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999864 2 5799999999999999999987 89999999999999999999999
Q ss_pred hcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceE-eeHH
Q 010566 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV-YSWD 203 (507)
Q Consensus 125 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~ 203 (507)
++|++++|+++.++.+++.++++.++++++|++............. ..+..+......... .. ....... ...+
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--DDIEFAGRDITTNGL-LD--NTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET--TC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc--ccceeeeeecccccc-cc--cccccccccchh
Confidence 9999999999999999999999999999999997654332111100 111111000000000 00 0000000 0011
Q ss_pred HHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHH
Q 010566 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (507)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~ 283 (507)
.+...............++++++++|||||||.||+|.++|.++.+.+..+...+ ++..+|++++.+|++|.+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 1111111111122345679999999999999999999999999999988865544 78899999999999999999
Q ss_pred HHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhcCC
Q 010566 284 AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (507)
Q Consensus 284 ~~~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (507)
..++.+++.|+++++.+. ++..+++.++++++|+++++|++++.|++....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 271 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------- 271 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence 888889999999999876 999999999999999999999999998652100
Q ss_pred CCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCCC-CccCCccC
Q 010566 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVG 441 (507)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~svG 441 (507)
. ..++|.+++||+++++++.+.+.+ +++++++.||+||+++.++...... ...++++|
T Consensus 272 ---------~-----------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 272 ---------E-----------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp ---------S-----------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred ---------C-----------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 0 026899999999999999999987 5899999999999987655544332 23458999
Q ss_pred ccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhcccCceeec-cEEEecC
Q 010566 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 442 ~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+|+++++++|+| ++ .++.|||+|+|+.++.||+++++.+.. |.+|||+|| +|++|+|
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~ 388 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHE 388 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTT
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCC
Confidence 999999999999 54 336899999999999999999999887 889999999 9999976
No 29
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=5.3e-55 Score=452.94 Aligned_cols=371 Identities=24% Similarity=0.318 Sum_probs=297.4
Q ss_pred CCCCCHHHHHHHHHHhCCC-CCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHH
Q 010566 41 PGMESCWDVFRMAVERNPN-NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~ 119 (507)
..+.|+.+.|+++++++|+ ++|+++. + +++||+||.++++++|+.|. .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 4578899999999999997 9999864 2 67999999999999998774 388999999999999999
Q ss_pred HHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceE
Q 010566 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (507)
Q Consensus 120 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 199 (507)
++||+++|++++||+|.++.+++.++++.++++++|++...... ........+ .++..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~------~~~~~~~~~-~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP------PALGALERV-DVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC------GGGTTSEEE-ECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc------hhhcccccc-ccccc---------------
Confidence 99999999999999999999999999999999999998652110 000111111 11110
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhH
Q 010566 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (507)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h 279 (507)
...........++++++++|||||||.||+|.++|.++.+.+..+...+ ++..+|++++.+|++|
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~ 207 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFH 207 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTS
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHH
Confidence 0011122345678999999999999999999999999999998866555 7889999999999999
Q ss_pred HHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh
Q 010566 280 IFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (507)
Q Consensus 280 ~~g~~~-~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (507)
.+++.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++.+....
T Consensus 208 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~--------------------- 265 (505)
T 3nyq_A 208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP--------------------- 265 (505)
T ss_dssp HHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH---------------------
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc---------------------
Confidence 999875 7888999999999876 899999999 8899999999999999876422110
Q ss_pred hhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCCCCccC
Q 010566 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437 (507)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~ 437 (507)
. ...++ +++|.+++||+++++++.+.+.+.+++++++.||+||++..++...... ...
T Consensus 266 ------------~-~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~ 323 (505)
T 3nyq_A 266 ------------E-LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRA 323 (505)
T ss_dssp ------------H-HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCT
T ss_pred ------------h-hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCC
Confidence 0 11112 2789999999999999999999999999999999999987766554443 345
Q ss_pred CccCccccCeeEEEeecCCCccccC-CCCCCceEEEecCcccccccCCchhhhhhc-ccCceeec-cEEEecC
Q 010566 438 GTVGPPVPNVDVCLESVPEMEYDAL-SSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 438 ~svG~p~pg~~i~ivd~~~~~~~~~-~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
+++|+|+||++++|+| ++++.++. +.|+.|||+|+|++++.|||++|+.|.+.| .||||+|| +|++|+|
T Consensus 324 ~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~d 395 (505)
T 3nyq_A 324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPD 395 (505)
T ss_dssp TCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTT
T ss_pred CCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCC
Confidence 8999999999999999 88877765 446899999999999999999999999999 79999999 9999976
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.9e-54 Score=451.65 Aligned_cols=391 Identities=19% Similarity=0.156 Sum_probs=308.2
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeeEeeccC----CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch
Q 010566 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDG----KAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP 114 (507)
Q Consensus 39 ~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~----~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~ 114 (507)
......|+.++|+++++++||++|+++. ++ .....+++||+||.++++++|+.|++.|+ +||+|+++++|++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~ 90 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSL 90 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCH
Confidence 4456688999999999999999999976 32 12334789999999999999999999999 7999999999999
Q ss_pred hhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhh
Q 010566 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (507)
Q Consensus 115 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 194 (507)
+++++++||+++|++++|+++.++.+++.++++.++++++|++........ ......++....
T Consensus 91 ~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~----------- 153 (562)
T 3ite_A 91 IAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN----------- 153 (562)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC-----------
T ss_pred HHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc-----------
Confidence 999999999999999999999999999999999999999999876543211 011122222111
Q ss_pred cCceEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhh---hccccCCCCcEE
Q 010566 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE---SVNEKLTSEDVY 271 (507)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~---~~~~~~~~~d~~ 271 (507)
..+.+...... .........++++++++|||||||.||+|.++|.++.+....+...+. .....+...+++
T Consensus 154 -----~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (562)
T 3ite_A 154 -----QSFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKF 227 (562)
T ss_dssp -----HHHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEE
T ss_pred -----hhhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceE
Confidence 11222222221 112223445788899999999999999999999999988776554321 223357788999
Q ss_pred EEecChhHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHH
Q 010566 272 VSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 272 ~~~~pl~h~~g~~~~~~~l~~G~~vvl~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (507)
++..|+.|..++..++.++..|+++++.+. .+..+++.++++++|+++++|++++.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~------------------- 288 (562)
T 3ite_A 228 LCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL------------------- 288 (562)
T ss_dssp ECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC-------------------
T ss_pred EEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc-------------------
Confidence 999999998888888889999999998764 46788899999999999999998876421
Q ss_pred HHHHHHhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceecc
Q 010566 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 429 (507)
.+ .++ +++|.+++||+++++++.+.+++.+++.+++.||+||++..++..
T Consensus 289 ------------------~~----~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 338 (562)
T 3ite_A 289 ------------------VP----EDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAG 338 (562)
T ss_dssp ------------------CG----GGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEE
T ss_pred ------------------Cc----ccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeee
Confidence 00 011 389999999999999999999998899999999999998877766
Q ss_pred CCCCCccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhcccC--ceeec-cEEEec
Q 010566 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--WFHTG-MGVWEQ 506 (507)
Q Consensus 430 ~~~~~~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg--w~~TG-lg~~d~ 506 (507)
........+++|+|+++++++|+| +++. .+++.|+.|||+|+|++++.|||++|+.+...+.+| ||+|| +|++|+
T Consensus 339 ~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~ 416 (562)
T 3ite_A 339 RILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA 416 (562)
T ss_dssp ECCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT
T ss_pred eecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC
Confidence 555444558999999999999999 5433 334456999999999999999999999888777666 99999 999998
Q ss_pred C
Q 010566 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 417 d 417 (562)
T 3ite_A 417 D 417 (562)
T ss_dssp T
T ss_pred C
Confidence 6
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-51 Score=471.14 Aligned_cols=373 Identities=20% Similarity=0.250 Sum_probs=307.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHHH
Q 010566 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 122 (507)
..++.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++|++|+|+++|+++++++++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999864 3 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010566 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++||+|.++.+++.++++.++++++|++......+... +.....+.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------- 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQT----------------- 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGG-----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEecccc-----------------
Confidence 999999999999999999999999999999999987654332111 1122333332210
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHH
Q 010566 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g 282 (507)
.+ .. ..........++++++++|||||||.||||.++|+++.+. .. ......++.+++++...|++|..+
T Consensus 592 -~~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~-----~~~~~~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 592 -RF-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VK-----HVDYMAFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp -GG-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HS-----SCCSSCCCTTCEEEECSCTTSTHH
T ss_pred -cc-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HH-----HHHhcCCCCCCEEEEECCccHHHH
Confidence 00 00 1111223456789999999999999999999999999876 33 223347788999999999999888
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhh
Q 010566 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 283 ~~~~~~~l~~G~~vvl~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
...++.++..|+++++.+. ++..+++.|.++++|+++++|++++.+.+...
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~------------------------- 716 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE------------------------- 716 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-------------------------
Confidence 8888999999999999864 89999999999999999999999998764200
Q ss_pred hcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhC-CcEEeecccccCccceeccCCCC---C
Q 010566 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNE---M 434 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~---~ 434 (507)
. .+ +++|.+++||++++.++.+.+.+.++ ..++|.||+||++..++...... .
T Consensus 717 -------------~--~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 717 -------------D--WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp -------------H--HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred -------------h--cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 0 01 27999999999999999999988774 68999999999998776554322 2
Q ss_pred ccCCccCccccCeeEEEeecCCCccccCCCCCCceEEEecCcccccccCCchhhhhhc-c------cCceeec-cEEEec
Q 010566 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V------DGWFHTG-MGVWEQ 506 (507)
Q Consensus 435 ~~~~svG~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~------dgw~~TG-lg~~d~ 506 (507)
....++|+|++|++++|+| ++++.++. |+.|||+|+|+++++||+|+|+.|+++| . ++||+|| +|++|+
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~~~p~--G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQLQPF--GAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSCBCCT--TCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCcCCCCC--CCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2346899999999999999 87776655 4899999999999999999999999999 3 2499999 999997
Q ss_pred C
Q 010566 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 851 d 851 (1304)
T 2vsq_A 851 D 851 (1304)
T ss_dssp T
T ss_pred C
Confidence 6
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.98 E-value=4.8e-32 Score=267.64 Aligned_cols=205 Identities=18% Similarity=0.146 Sum_probs=172.6
Q ss_pred CCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEec
Q 010566 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (507)
Q Consensus 221 ~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~~ 300 (507)
.+++++|+|||||||.||+|.+||+++.+.+..+...+ +++++|++++.+|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 46899999999999999999999999999998865544 7889999999999999999998888999999999886
Q ss_pred CCHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHHhHHHHH
Q 010566 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380 (507)
Q Consensus 301 ~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (507)
. ....++.++++++|+++++|++++.+++... ...++
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l---- 147 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV---- 147 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence 4 2234678999999999999999999865210 01112
Q ss_pred HHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccceeccCCCCCccCCccCccccCeeEEEeecCCCccc
Q 010566 381 QSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD 460 (507)
Q Consensus 381 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~svG~p~pg~~i~ivd~~~~~~~ 460 (507)
++||.+++||+++++++.+++++ +++++++.||+||+++.++......... +++|.+.||+++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 38999999999999999999987 5899999999999998877766655444 8899999999988754
Q ss_pred cCCCCCCceEEEecCcccccccCCchhhhhhcccCceeec-cEEEecC
Q 010566 461 ALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 461 ~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.|||+++|+.+ .+|||+|| +|++|+|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~ 241 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGN 241 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSS
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccC
Confidence 69999998742 37899999 9999986
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.97 E-value=2.6e-30 Score=262.97 Aligned_cols=227 Identities=15% Similarity=0.079 Sum_probs=178.7
Q ss_pred CCCC-CCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHH-HHHHHHHcCCE
Q 010566 218 VKKK-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA-IEEVFISNGAA 295 (507)
Q Consensus 218 ~~~~-~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~ 295 (507)
...+ +++++++|||||||.||+|.++|.++......+...+ ...++..+|++++.+|+.|..+.. .++.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCL--YMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHH--HHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHH--HHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3445 8899999999999999999999999987766653322 123678899999999997665554 57778999999
Q ss_pred EEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhcCCCCCCCcchhhHH
Q 010566 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (507)
Q Consensus 296 vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 374 (507)
+++.+. ++..+++.|+++++|+++++|+++..|++..........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~---------------------------------- 204 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPR---------------------------------- 204 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTT----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcc----------------------------------
Confidence 998765 999999999999999999999999999875444321100
Q ss_pred hHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccc-eeccCCCCCccCCccCccccCeeEEEee
Q 010566 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLES 453 (507)
Q Consensus 375 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~~~~svG~p~pg~~i~ivd 453 (507)
.+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +...... . ..+|.|.++++++|+|
T Consensus 205 ---------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~-~g~~~~~~~~~v~i~d 271 (436)
T 3qov_A 205 ---------ETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---Q-NGMHFWEDCYLVEIID 271 (436)
T ss_dssp ---------SSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---C-SSEEECTTTEEEEEEC
T ss_pred ---------cCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---C-CeeEEccCceEEEEEE
Confidence 137999999999999999999999999999999999999554 3332211 1 2367788899999999
Q ss_pred cCCCccccCCCCCCceEEEecCcccccccCCchhhhhhcccCceeec-cEEEecC
Q 010566 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 454 ~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.++++.++ .|+.|||+|+|. +.+.|.++||+|| +|++|+|
T Consensus 272 ~~~g~~~~--~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~ 312 (436)
T 3qov_A 272 PETGEPVP--EGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPG 312 (436)
T ss_dssp TTTCSBCS--TTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECS
T ss_pred CCCCCCCC--CCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCC
Confidence 44455444 569999999984 2334568999999 9999975
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.97 E-value=1.3e-29 Score=257.91 Aligned_cols=242 Identities=17% Similarity=0.104 Sum_probs=184.4
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-
Q 010566 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL- 277 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl- 277 (507)
..+.+++.... +.......++++++++|||||||.||+|.++|.++......+...+ ...+++.+|++++.+|+
T Consensus 70 ~~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~ 144 (437)
T 2y27_A 70 FTTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSI--RAAGARRGDKVHVSYGYG 144 (437)
T ss_dssp CBCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHH--HHTTCCTTCEEEECSCCS
T ss_pred CCCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHH--HHcCCCCCCEEEEccccc
Confidence 44556665433 1123344668899999999999999999999999887765543321 12367889999999998
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Q 010566 278 AHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 278 ~h~~g~~~~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
+|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 145 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------- 207 (437)
T 2y27_A 145 LFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP----------------- 207 (437)
T ss_dssp SSHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------
T ss_pred ccccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------
Confidence 688887778888999999998765 99999999999999999999999999877543321100
Q ss_pred hhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccc-eeccCCCCCc
Q 010566 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMS 435 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~ 435 (507)
. .+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +........
T Consensus 208 ------------------~--------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~- 260 (437)
T 2y27_A 208 ------------------V--------QSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK- 260 (437)
T ss_dssp ------------------G--------GSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC-
T ss_pred ------------------c--------cCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC-
Confidence 0 037999999999999999999999889999999999998432 333222111
Q ss_pred cCCccCccccCeeEEEeecCC-CccccCCCCCCceEEEecCcccccccCCchhhhhhcccCceeec-cEEEec
Q 010566 436 MIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQ 506 (507)
Q Consensus 436 ~~~svG~p~pg~~i~ivd~~~-~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~ 506 (507)
..++.|.+++.++|+| ++ ++.++ .|+.|||+|+|. +.+.|.++||+|| +|++|+
T Consensus 261 --~g~~~~~~~~~~~i~d-~~~g~~~~--~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~ 316 (437)
T 2y27_A 261 --DGPTIWEDHFYPEIID-PETGEVLP--DGELGELVFTSL------------TKEALPIIRYRTRDLTRLLP 316 (437)
T ss_dssp --SSCEECTTTEEEEEEC-TTTCCBCC--TTCCEEEEEEES------------SCSSSCCCSEEEEEEECEEC
T ss_pred --CceeEccCceEEEEEc-CCCCCCCC--CCCccEEEEecC------------CcCCchhheeecCCEEEEeC
Confidence 1256677899999999 54 55444 569999999983 2334568999999 999997
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.97 E-value=2e-29 Score=256.89 Aligned_cols=243 Identities=16% Similarity=0.104 Sum_probs=184.1
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-
Q 010566 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL- 277 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl- 277 (507)
..+.+++.... +.......++++++++|||||||.||+|.++|.++......+...+ ...++..+|++++.+|+
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~ 146 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSI--RAAGGRPGDTLHNAFGYG 146 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHH--HHTTCCTTCEEEECSCCS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHH--HHcCCCCCCEEEEeccCc
Confidence 44566665433 1122344668899999999999999999999999887665543321 12367889999999999
Q ss_pred hHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Q 010566 278 AHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 278 ~h~~g~~~~~~~l~~G~~vvl~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
.|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 147 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------- 209 (443)
T 2y4o_A 147 LFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP----------------- 209 (443)
T ss_dssp SSHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------
T ss_pred ccccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-----------------
Confidence 577777778888999999988765 99999999999999999999999999877543321100
Q ss_pred hhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHHhCCcEEeecccccCccc-eeccCCCCCc
Q 010566 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMS 435 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~ 435 (507)
. .+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +........
T Consensus 210 ------------------~--------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~- 262 (443)
T 2y4o_A 210 ------------------A--------ESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK- 262 (443)
T ss_dssp ------------------G--------GSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC-
T ss_pred ------------------c--------cCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC-
Confidence 0 037999999999999999999999899999999999998443 333222111
Q ss_pred cCCccCccccCeeEEEeecCC-CccccCCCCCCceEEEecCcccccccCCchhhhhhcccCceeec-cEEEecC
Q 010566 436 MIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~svG~p~pg~~i~ivd~~~-~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.+ .+.|.+++.++|+| ++ ++.++ .|+.|||+|+|. +.+.|.++||+|| +|++|+|
T Consensus 263 -~g-~~~~~~~~~~~i~d-~~~g~~~~--~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~ 319 (443)
T 2y4o_A 263 -DG-PVIWEDHFYPEIID-PVTGEVLP--DGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPP 319 (443)
T ss_dssp -CS-EEECTTTEEEEEEC-TTTCCBCC--TTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECC
T ss_pred -Cc-eEEccCCeEEEEEc-CCCCCCCC--CCCceEEEEeCC------------CcccChhheeecCCEEEEcCC
Confidence 12 55577899999999 54 55444 569999999983 2334568999999 9999975
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=7.1e-29 Score=246.70 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=175.7
Q ss_pred CCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-hHHHHHHHHHHHHHcCCEEE
Q 010566 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAAIG 297 (507)
Q Consensus 219 ~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-~h~~g~~~~~~~l~~G~~vv 297 (507)
..++++++++|||||||.||+|.++|.++......+... ....++..+|++++.+|+ +|.+++...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~--~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSG--YQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTT--TTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhh--HHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 467888999999999999999999999999888754332 233467889999999999 99999988887899999443
Q ss_pred EecCCHH-----------------------HHHHHhhhhCCeEEEeCcHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 010566 298 FWRGDVK-----------------------LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (507)
Q Consensus 298 l~~~~~~-----------------------~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (507)
..+.++. .+++.++++++|+++++|+++..|++...
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--------------------- 224 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--------------------- 224 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH---------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh---------------------
Confidence 3334666 78889999999999999999999865311
Q ss_pred HhhhhcCCCCCCCcchhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHH-HHh-CCcEEeecccccCccceeccCCC
Q 010566 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR-VVA-CAHVLQGYGLTETCAGTFVSLPN 432 (507)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-~~~v~~~YG~tE~~~~~~~~~~~ 432 (507)
....++ +++|.+++||+++++++.+.++ +.+ ++++++.||+||+++++..+..
T Consensus 225 ----------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 225 ----------------VVLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp ----------------HHHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred ----------------hhcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 111112 2799999999999999999999 888 8999999999999876543321
Q ss_pred CCccCCccCcc------ccCeeEEEeecC-CCccccCCCCCCceEEEec---CcccccccCCchhhhhhcccCceeec
Q 010566 433 EMSMIGTVGPP------VPNVDVCLESVP-EMEYDALSSTPRGEVCVKG---STVFSGYYKREDLTKEVMVDGWFHTG 500 (507)
Q Consensus 433 ~~~~~~svG~p------~pg~~i~ivd~~-~~~~~~~~~g~~Gel~v~g---~~v~~gY~~~~~~~~~~~~dgw~~TG 500 (507)
.++|+| +|+++++|+| + +++.++ .|+.|||+|++ ...+.+|...+..+.....+||+.+|
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g~~vp--~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~ 349 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVD-SITAQTVE--YGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDR 349 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEEC-TTTCSBCC--TTCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCE
T ss_pred -----ccCCCcccccCCCCCeEEEEEC-CCCCcCCC--CCCceEEEEEEcCcccccccccCCceEEEecCCCCCcCcc
Confidence 148999 9999999999 6 666554 55999999997 33467887766655555578898888
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=95.13 E-value=0.89 Score=46.49 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=36.3
Q ss_pred CceEeeHHHHHHcccC-CCCCC-CCCCCCCeEEEEeccCCC-CCCceeeeccHHHHHH
Q 010566 196 GLAVYSWDEFLQLGEN-KQFDL-PVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVTF 250 (507)
Q Consensus 196 ~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~~ 250 (507)
.+.+.+++++...... ..... ....++.+.+..-||||| |.+|-+.+|...+-..
T Consensus 65 ~VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 65 NVPIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp HSCCBCHHHHHHHHHHHHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 4467778776543211 01111 234566777899999999 6799999999877553
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=94.42 E-value=0.8 Score=47.03 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=35.8
Q ss_pred CceEeeHHHHHHcccC-CCCCC-CCCCCCCeEEEEeccCCC-CCCceeeeccHHHHH
Q 010566 196 GLAVYSWDEFLQLGEN-KQFDL-PVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVT 249 (507)
Q Consensus 196 ~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~ 249 (507)
.+.+.+++++...... ...+. ....++.+.++..||||| |+||.+.+|...+-.
T Consensus 71 ~VPv~~Yedl~p~ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 71 KIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp HSCCBCHHHHHHHHHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred hCCCccHHHHHHHHHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 3456777776543211 01111 234567778899999999 789999999987655
No 39
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.54 E-value=0.97 Score=44.65 Aligned_cols=125 Identities=14% Similarity=0.049 Sum_probs=88.3
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hhhHHHHHHHHhcCCEEEe
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~ 132 (507)
.++.++.+... .|.+|.. ..+|...+...+..+++.+...|++++|++...++.. ...+..+++++..|+.+++
T Consensus 88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34666766541 3444433 4689999988888888888888999999999988853 4445567888999999887
Q ss_pred cCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCC----C-CCCCccEEEEecCC
Q 010566 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP----K-TTEHLKTIVSFSKV 184 (507)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~----~-~~~~~~~v~~~~~~ 184 (507)
+++ .+.+.+...++..++++++.....+..+.+... . ....++.++.-+..
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 765 478899999999999999988766554443211 1 12456666665543
No 40
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.01 E-value=1.3 Score=43.91 Aligned_cols=125 Identities=14% Similarity=0.029 Sum_probs=88.4
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hhhHHHHHHHHhcCCEEEe
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~ 132 (507)
.++.++.+... .|.+|.. ..+|...+...+..+++.+...|+.++|++...++-+ ...+..+++++..|+.+++
T Consensus 90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34566655441 4555544 3678999988888888888788999999999988853 3445567888999999887
Q ss_pred cCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCC----C-CCCCccEEEEecCC
Q 010566 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP----K-TTEHLKTIVSFSKV 184 (507)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~----~-~~~~~~~v~~~~~~ 184 (507)
+++. +.+.+...++..++++++.....+..+.+... . ....++.++.-+..
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 7654 78889999999999999988766554433211 1 12466666665543
No 41
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=89.88 E-value=1.4 Score=43.43 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=88.2
Q ss_pred CCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc--hhhHHHHHHHHhcCCEEEecC
Q 010566 59 NNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVPLY 134 (507)
Q Consensus 59 d~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~ 134 (507)
+.+|.+.. +.|.+|.. ..+|...+...+..+++.+...|+.++|++....+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 45566554 13444433 4689999999888888888888999999999988753 344556788899999988776
Q ss_pred CCCCHHHHHHHHHhcCccEEEecCCChhHHhhcC-----CCCCCCccEEEEecCC
Q 010566 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF-----PKTTEHLKTIVSFSKV 184 (507)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~ 184 (507)
+ .+.+.+...++..++++++.....+..+.+.. ......++.+++-+..
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 5 47788999999999999998877655544321 1113566777665544
No 42
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=86.68 E-value=10 Score=37.90 Aligned_cols=122 Identities=11% Similarity=0.012 Sum_probs=85.5
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-hHHHHHHHHhcCCEEEec
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l 133 (507)
.++.+|++... .|.+|.+ ..+|...+...+..+.. ..++.+++++...+|-.-. .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46778877661 3444433 46788888776655543 3588999999988876643 344567888999998876
Q ss_pred CCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCC
Q 010566 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (507)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 184 (507)
+ ..+++.+...++..++++++........+.+........++.++.-+..
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 5 4788999999999999999998877766655544333456666655433
No 43
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=81.54 E-value=5.1 Score=38.28 Aligned_cols=104 Identities=11% Similarity=0.004 Sum_probs=69.8
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--chhhHHHHHHHHhcCCEEEe
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVN--CPEWIIGMEACNALGLHCVP 132 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~v~ 132 (507)
.++.++.+... .|.+|.. ..+|...+...+..+++.+...|+.++|++..+++- +.-.+...+++...|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 35666766551 4544544 357888888888777777777899999999999886 33334455666888985554
Q ss_pred cCCCCCHH-----------------------HHHHHHHhcCccEEEecCCChhHH
Q 010566 133 LYDTLGAG-----------------------AVEFIICHSGVSIAFVEEKKIPEM 164 (507)
Q Consensus 133 l~~~~~~~-----------------------~l~~~l~~~~~~~ii~~~~~~~~~ 164 (507)
. ..++. .+...++..++.+++.....+..+
T Consensus 167 ~--~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 167 I--DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp C--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred c--cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 3 33444 666688999999998876555444
No 44
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=79.60 E-value=33 Score=34.49 Aligned_cols=122 Identities=11% Similarity=0.004 Sum_probs=83.4
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHH---HHHHHHhcCCEEE
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII---GMEACNALGLHCV 131 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~v 131 (507)
.|+.+|++... .|.+|.+ ..+|...+...+..... ..++.++|++...+|-+..+-. .+++++..|+.++
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 46778877661 3444433 46899888776655544 3478899999888887644432 4788899999988
Q ss_pred ecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhc---CCCCCCCccEEEEecCC
Q 010566 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT---FPKTTEHLKTIVSFSKV 184 (507)
Q Consensus 132 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~ 184 (507)
..+ ..+++.+...++..++++++........+.+. .....+.++.+++-+..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 665 46888999999999999999887655544332 12233667766665543
No 45
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=75.73 E-value=18 Score=36.23 Aligned_cols=120 Identities=12% Similarity=0.014 Sum_probs=77.5
Q ss_pred CCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHH--HHHHHHhcCCEEEec
Q 010566 58 PNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII--GMEACNALGLHCVPL 133 (507)
Q Consensus 58 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~v~l 133 (507)
|+.+|++... .|.+|.+ ..+|...+...+..++.. .++.++|++...+|-.-.+-. .+++++ .|+.++..
T Consensus 169 ~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 5667776651 3444443 368888887776665544 488999999988887654433 244555 88888766
Q ss_pred CCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcC---CCCCCCccEEEEecCC
Q 010566 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PKTTEHLKTIVSFSKV 184 (507)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~ 184 (507)
+ ..+.+.+...++..++.+++........+.+.. ....+.++.++.-+..
T Consensus 243 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 243 P-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAP 295 (517)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCC
Confidence 4 578899999999999999998876555443321 1122556666655443
No 46
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=74.61 E-value=16 Score=37.09 Aligned_cols=121 Identities=12% Similarity=-0.047 Sum_probs=80.8
Q ss_pred CCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhH--HHHHHHHhcCCEEEecC
Q 010566 59 NNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI--IGMEACNALGLHCVPLY 134 (507)
Q Consensus 59 d~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l~ 134 (507)
+.+|++... .|.+|.+ ..+|...+...+......+...++.++|++...+|-+-.+- ..+++++ .|+.++.++
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 667777651 3444432 46899988776665544333357889999988887764432 3356777 999888765
Q ss_pred CCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCC---CCCCCccEEEEecC
Q 010566 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLKTIVSFSK 183 (507)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~v~~~~~ 183 (507)
..+++.+...++..++++++........+.+... ...+.++.++.-+.
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 319 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCc
Confidence 5788999999999999999988776665544321 12255666665443
No 47
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=73.87 E-value=19 Score=37.17 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=85.3
Q ss_pred CCCCCceeeEeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-hHHHHHHHHhcCCEEEec
Q 010566 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l 133 (507)
.|+.+|++.+. .|.+|.++ .+|...+...+. .....++.+++++...++-+-+ .+..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 46778877662 45555443 678877654332 2223588999999998887654 344578888999988776
Q ss_pred C-CCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCC
Q 010566 134 Y-DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185 (507)
Q Consensus 134 ~-~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 185 (507)
+ ...+++.+...++..++++++........+.+......+.++.+++-+...
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l 288 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDIL 288 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcC
Confidence 3 356888999999999999999887766665554444446777777766543
No 48
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=73.39 E-value=24 Score=35.58 Aligned_cols=122 Identities=14% Similarity=0.035 Sum_probs=81.5
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHH---HHHHHHhcCCEEE
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII---GMEACNALGLHCV 131 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~v 131 (507)
.++.+|++... .|.+|.+ ..+|...+...+...+.. .++.++|++...+|....+-. .+++++..|+.++
T Consensus 189 ~~~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQLS--GGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEEC--CC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEEC--CCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 35677777651 3444433 468998888776665543 588999999998886654433 3788888999887
Q ss_pred ecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCC---CCCCCccEEEEecCC
Q 010566 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLKTIVSFSKV 184 (507)
Q Consensus 132 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~ 184 (507)
..+ ..++..+...++..++++++........+.+... ...+.++.+++-+..
T Consensus 264 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 264 MAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence 665 4678888899999999999988765554433221 112456666655543
No 49
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=72.39 E-value=15 Score=34.81 Aligned_cols=120 Identities=8% Similarity=-0.054 Sum_probs=76.3
Q ss_pred hCCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-hHHHHHHHHhcCCEEEe
Q 010566 56 RNPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVP 132 (507)
Q Consensus 56 ~~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~ 132 (507)
-+.|.+|++... .|.+|.+ ..+|+..+...+..++. ..+++++|++...+|-+-. .+..++..+..|+..+.
T Consensus 34 w~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~ 108 (358)
T 4gs5_A 34 WLGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTV 108 (358)
T ss_dssp HHHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred cCCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEe
Confidence 345778887662 4555554 36899988776655544 3588999999988876543 34456667778888777
Q ss_pred cCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCC--CCCCccEEEEecC
Q 010566 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK--TTEHLKTIVSFSK 183 (507)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~v~~~~~ 183 (507)
..+.... ...++..++.+++.....+..+.+.... ..+.++.+++-+.
T Consensus 109 ~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~ 158 (358)
T 4gs5_A 109 TEPTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGA 158 (358)
T ss_dssp ECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSS
T ss_pred cCccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEccc
Confidence 6654332 3457788899988877655555443221 2245555555443
No 50
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=70.60 E-value=34 Score=34.07 Aligned_cols=123 Identities=10% Similarity=-0.012 Sum_probs=81.1
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-hHHHHHHHHhcCCEEEec
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l 133 (507)
.++.+|++... .|.+|.+ ..+|...+...+..... ..++.++|++...+|-+.. .+..+++++..|+.++.+
T Consensus 142 ~~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 35667777651 3444443 36788888766554443 4588999999998887643 345678889999998877
Q ss_pred CCC--CCHHHHHHHHHhcCccEEEecCCChhHHhhcC---CCCCCCccEEEEecCC
Q 010566 134 YDT--LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PKTTEHLKTIVSFSKV 184 (507)
Q Consensus 134 ~~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~ 184 (507)
++. .+++.+...++..++++++........+.... ....+.++.++.-+..
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~ 272 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEV 272 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSC
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCc
Confidence 653 46788889999999999988876555443322 1223556666655543
No 51
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=68.46 E-value=50 Score=32.83 Aligned_cols=123 Identities=10% Similarity=-0.021 Sum_probs=82.8
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhh-HHHHHHHHhcCCEEEec
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPL 133 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l 133 (507)
.++.+|++... .|.+|.+ ..+|...+...+..+.. ..++.+++++...+|-+..+ +..+++++..|+.++.+
T Consensus 141 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 35667777652 4555544 36888888766655443 46788999999988876443 45578889999998876
Q ss_pred CCC--CCHHHHHHHHHhcCccEEEecCCChhHHhhcC---CCCCCCccEEEEecCC
Q 010566 134 YDT--LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PKTTEHLKTIVSFSKV 184 (507)
Q Consensus 134 ~~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~ 184 (507)
+.. .+++.+...++..++++++........+.... ....+.++.++.-+..
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 543 46778889999999999998876665544322 1222455666555433
No 52
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=68.09 E-value=21 Score=36.38 Aligned_cols=122 Identities=10% Similarity=0.095 Sum_probs=84.9
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCch-hhHHHHHHHHhcCCEEEec
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP-EWIIGMEACNALGLHCVPL 133 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~-~~~~~~lA~~~~G~~~v~l 133 (507)
.|+.+|++... .|.+|.. ..+|...+...... ....++.++|++...+|-+. -+...+++++..|+.++..
T Consensus 212 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMFT--SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEECC--SSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 46777877651 3444433 36888877533221 22357889999998888754 3455678888999988877
Q ss_pred CC-CCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCC
Q 010566 134 YD-TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (507)
Q Consensus 134 ~~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 184 (507)
.. ..++..+...++..++++++........+.+........++.++.-+..
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 64 5678899999999999999998877666665554445677777766654
No 53
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=67.69 E-value=40 Score=34.26 Aligned_cols=123 Identities=9% Similarity=-0.070 Sum_probs=83.3
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHH--HHHHHHhcCCEEEe
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII--GMEACNALGLHCVP 132 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~v~ 132 (507)
.|+.+|++... .|.+|.+ ..+|...+...+..+.. ..++.++|++...+|-.-.+-. .+++++..|+.++.
T Consensus 165 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQYT--SGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEEC--SSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--cCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 46778887661 3444433 46899988877666544 4588999999999887765433 37888999999887
Q ss_pred cCCCC---CHHHHHHHHHhcCccEEEecCCChhHHhhcC------CCCCCCccEEEEecCC
Q 010566 133 LYDTL---GAGAVEFIICHSGVSIAFVEEKKIPEMLKTF------PKTTEHLKTIVSFSKV 184 (507)
Q Consensus 133 l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~ 184 (507)
..+.. ++..+...++..+++++.........+.+.. ....+.++.++.-+..
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~ 300 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCC
Confidence 76532 5678888999999999888765444443321 1122556666655543
No 54
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=66.94 E-value=56 Score=32.89 Aligned_cols=107 Identities=6% Similarity=-0.118 Sum_probs=76.9
Q ss_pred CCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEe
Q 010566 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (507)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~ 299 (507)
.++.+|++....+..+ -..-.+|...|...+..+...+. ..++.++|++...++-.. -....+++++..|+..+..
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGIS--RKGVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEcc
Confidence 3567777654321111 12256899999888888777553 336788999999888762 2334577889999998887
Q ss_pred cC--CHHHHHHHhhhhCCeEEEeCcHHHHHHHH
Q 010566 300 RG--DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (507)
Q Consensus 300 ~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~ 330 (507)
+. ..+.+...++..++..++..+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 65 88999999999999999998877665543
No 55
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=66.59 E-value=64 Score=31.99 Aligned_cols=120 Identities=8% Similarity=-0.054 Sum_probs=76.3
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhh-HHHHHHHHhcCCEEEec
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPL 133 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l 133 (507)
.++.+|++... .|.+|.+ ..+|...+...+..+.. ..++.++|++...+|-.-.+ +...+.+...|+..+.+
T Consensus 158 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 158 GAADGFVIIHT--AAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CTTSEEEEEEE--EC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CccccEEEEeC--CCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 46677777652 4555544 36888888776665544 35889999999988876443 23334434444444444
Q ss_pred CCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCC-CCCCCccEEEEec
Q 010566 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP-KTTEHLKTIVSFS 182 (507)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~v~~~~ 182 (507)
. ..+++.+...++..++.+++.....+..+.+... .....++.++...
T Consensus 233 ~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g 281 (509)
T 3ivr_A 233 A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLD 281 (509)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEEC
T ss_pred c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccC
Confidence 4 6789999999999999999988877766654432 2224555554433
No 56
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=66.41 E-value=32 Score=35.01 Aligned_cols=123 Identities=10% Similarity=-0.061 Sum_probs=79.9
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhH--HHHHHHHhcCCEEEe
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI--IGMEACNALGLHCVP 132 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~v~ 132 (507)
.++.+|++... .|.+|.+ ..+|.. +..... +......+++++|++...++-...+- ..+++++..|+..+.
T Consensus 204 ~~~d~a~i~~T--SGTTG~PKgV~~sh~-~~~~~~--~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYFT--SGTSGLPKMAEHSYS-SLGLKA--KMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEEC--CCSSSSCCEEEEEHH-HHHHHH--HHHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEEC--CCCCCCCCEEEechH-HHHhhh--hhhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 35667777651 3444443 357877 433111 11123468899999988888765443 346788889998877
Q ss_pred cCC-CCCHHHHHHHHHhcCccEEEecCCChhHHhhcCC--CCCCCccEEEEecCC
Q 010566 133 LYD-TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP--KTTEHLKTIVSFSKV 184 (507)
Q Consensus 133 l~~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~ 184 (507)
... ..+++.+...++..++++++........+.+... ...+.++.++.-+..
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~ 333 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGES 333 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCc
Confidence 653 6788999999999999999998776665554321 123566677665544
No 57
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=65.07 E-value=48 Score=33.22 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=75.5
Q ss_pred CCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEe
Q 010566 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (507)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~ 299 (507)
.++.++++.. .+| -.+|+..+...+..+...+.. .++.++|++...++-.. -....+++++..|+..+..
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEecc
Confidence 4667776542 222 468999998888887775533 47788999999888763 2334577889999998887
Q ss_pred cC--CHHHHHHHhhhhCCeEEEeCcHHHHHHHH
Q 010566 300 RG--DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (507)
Q Consensus 300 ~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~ 330 (507)
+. .++.+...++..++.+++..+.....+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 65 88999999999999999998876666543
No 58
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=64.84 E-value=23 Score=35.88 Aligned_cols=123 Identities=11% Similarity=-0.060 Sum_probs=79.7
Q ss_pred CCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-hHHHHHHHHhcCCEEEecCC
Q 010566 59 NNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPLYD 135 (507)
Q Consensus 59 d~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l~~ 135 (507)
+.+|++... .|.+|.+ ..+|...+...+......+...++.+++++...+|-+-. .+..+++++..|+.++.+.
T Consensus 190 ~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 266 (550)
T 3rix_A 190 KTIALIMNS--SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY- 266 (550)
T ss_dssp TSEEEEEEC-------CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCEEEEEEC--CCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-
Confidence 556766551 3443433 468888877665554443333578899999888886643 3455677889999888764
Q ss_pred CCCHHHHHHHHHhcCccEEEecCCChhHHhhcCC---CCCCCccEEEEecCC
Q 010566 136 TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLKTIVSFSKV 184 (507)
Q Consensus 136 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~ 184 (507)
..+++.+...++..++++++........+.+... ...+.++.++.-+..
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 318 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAP 318 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSC
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCC
Confidence 5788899999999999999988766655544321 122566666655543
No 59
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=64.52 E-value=1.2e+02 Score=30.82 Aligned_cols=121 Identities=15% Similarity=0.085 Sum_probs=81.9
Q ss_pred CCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHH---HHHHHHhcCCEEEe
Q 010566 58 PNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII---GMEACNALGLHCVP 132 (507)
Q Consensus 58 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~v~ 132 (507)
++.+|++... .|.+|.+ ..+|...+...+...... .++.+++++...++-+..+-. .+++++..|+.++.
T Consensus 183 ~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 5677777651 3444433 468888887766655443 478899999998886544433 47888889998876
Q ss_pred cCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcC-----CCCCCCccEEEEecCC
Q 010566 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF-----PKTTEHLKTIVSFSKV 184 (507)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~ 184 (507)
.+. .+...+...++..+++++.........+.+.. ....+.++.+++-+..
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 654 57788889999999999998876555443321 1133567777666544
No 60
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=63.63 E-value=70 Score=32.09 Aligned_cols=100 Identities=7% Similarity=-0.113 Sum_probs=73.7
Q ss_pred CCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEec
Q 010566 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (507)
Q Consensus 221 ~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~~ 300 (507)
++.++++.... -..-.+|...+...+..+...+. ..++.++|++...++-.. -.+..+++++..|+..+..+
T Consensus 32 p~~~a~~~~~~-----~~~~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~ 103 (541)
T 1v25_A 32 GRKEVVSRLHT-----GEVHRTTYAEVYQRARRLMGGLR--ALGVGVGDRVATLGFNHF-RHLEAYFAVPGMGAVLHTAN 103 (541)
T ss_dssp TTCEEEEECTT-----SCEEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECC
T ss_pred CCceEEEEecC-----CCCceecHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCcH-HHHHHHHHHHhcCcEEEecC
Confidence 45666654321 12457899999888888777553 346788999999888662 23344778899999988876
Q ss_pred C--CHHHHHHHhhhhCCeEEEeCcHHHHHH
Q 010566 301 G--DVKLLLEDIGELKPTIFCAVPRVLDRI 328 (507)
Q Consensus 301 ~--~~~~~~~~i~~~~vt~l~~~P~~l~~l 328 (507)
. .++.+...++..++.+++..+.....+
T Consensus 104 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 104 PRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 5 788999999999999999988766543
No 61
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=62.34 E-value=59 Score=28.20 Aligned_cols=52 Identities=12% Similarity=-0.089 Sum_probs=37.2
Q ss_pred cEEEEecCh-hHHHHHHHH-HHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEEe
Q 010566 269 DVYVSYLPL-AHIFDRAIE-EVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCA 320 (507)
Q Consensus 269 d~~~~~~pl-~h~~g~~~~-~~~l~~G~~vvl~~~--~~~~~~~~i~~~~vt~l~~ 320 (507)
.+++...+- .|..|..++ ...-..|..++.... +++.+++.+.+++++.+.+
T Consensus 94 ~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 94 LAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 344444443 388888764 444667888776543 8999999999999998777
No 62
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=61.19 E-value=44 Score=34.64 Aligned_cols=123 Identities=9% Similarity=-0.047 Sum_probs=81.0
Q ss_pred CCCCceeeEeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhH--HHHHHHHhcCCEEEec
Q 010566 58 PNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI--IGMEACNALGLHCVPL 133 (507)
Q Consensus 58 pd~~al~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~v~l 133 (507)
++.+|++.+. .|.+|.++ .+|...+...+..... ...+++++|++....+-+...- ..+++.+..|+..+..
T Consensus 255 ~~d~a~ilyT--SGTTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILYT--SGSTGKPKGVLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEEE--CCSSSSCEEEEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEec--cCCCCCCceEEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 5667777652 45555443 5677766543322111 2367899999988877765443 3467889999998877
Q ss_pred CCC---CCHHHHHHHHHhcCccEEEecCCChhHHhhcCC-----CCCCCccEEEEecCC
Q 010566 134 YDT---LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP-----KTTEHLKTIVSFSKV 184 (507)
Q Consensus 134 ~~~---~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~ 184 (507)
+.. .+++.+..+++..+++++++.......+.+... ...+.++.+++-+..
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 389 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence 642 467889999999999999988766655544321 123567777766654
No 63
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=60.61 E-value=88 Score=30.56 Aligned_cols=107 Identities=9% Similarity=-0.049 Sum_probs=75.9
Q ss_pred CCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEe
Q 010566 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (507)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~ 299 (507)
.++.+|++.........-....+|...|...+..+...+... +. ++|++...++-.. --+..+++++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGL-EYVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcH-HHHHHHHHHHHhCcEEEee
Confidence 467778776543221122346789999999998888766332 33 7889888887762 2334577889999998876
Q ss_pred cC-----CHHHHHHHhhhhCCeEEEeCcHHHHHHHH
Q 010566 300 RG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (507)
Q Consensus 300 ~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~ 330 (507)
+. ..+.+...++..++..++..+.....+..
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 43 46788889999999999998887666543
No 64
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=60.25 E-value=68 Score=33.27 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=73.6
Q ss_pred CCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEe
Q 010566 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (507)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~ 299 (507)
.++.+|++... ..+| ....+|...|...+..+...+. ...++.++|++...+|..- -....+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~-~~~Gv~~Gd~V~i~~~~~~-e~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLT-YSMGVRKGDTVAVYMPMVP-EAIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHH-HTSCCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEee
Confidence 45677776542 2222 2356899999988888877552 0347789999999999873 2334578889999988877
Q ss_pred cC--CHHHHHHHhhhhCCeEEEeCcHH
Q 010566 300 RG--DVKLLLEDIGELKPTIFCAVPRV 324 (507)
Q Consensus 300 ~~--~~~~~~~~i~~~~vt~l~~~P~~ 324 (507)
.. .++.+...++..++.++++....
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 64 88999999999999999986653
No 65
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=60.17 E-value=61 Score=32.22 Aligned_cols=103 Identities=9% Similarity=-0.024 Sum_probs=71.6
Q ss_pred CCCCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhh--HHHHHHHHhcCCEEEe
Q 010566 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW--IIGMEACNALGLHCVP 132 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~v~ 132 (507)
.++.+|++... .|.+|.+ ..+|...+...+..+...+ ++.++|++...++..-.+ +..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 46677777652 4555543 3688998888777665544 788999988877764332 3357888999998876
Q ss_pred cCCCCCHHHHHHHHHhcCccEEEecCCChhHHhh
Q 010566 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (507)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 166 (507)
.. ..+.+.+...+ ..++.+++........+.+
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 64 56777777777 6789988887765554443
No 66
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=58.66 E-value=79 Score=31.30 Aligned_cols=98 Identities=13% Similarity=0.051 Sum_probs=70.4
Q ss_pred CCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEe
Q 010566 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (507)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~ 299 (507)
.++.++++.. . .+..+|+..|...+..+...+.. .++.++|++...++-.. -....+++++..|+..+..
T Consensus 15 ~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVP---A----RGLRLTHAELRARVEAVAARLHA--DGLRPQQRVAVVAPNSA-DVVIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCH-HHHHHHHHHHHhCcEEEec
Confidence 3566676542 1 13578999998888887775533 36788999999888763 2334577889999998877
Q ss_pred cC--CHHHHHHHhhhhCCeEEEe--CcHHHHH
Q 010566 300 RG--DVKLLLEDIGELKPTIFCA--VPRVLDR 327 (507)
Q Consensus 300 ~~--~~~~~~~~i~~~~vt~l~~--~P~~l~~ 327 (507)
+. .++.+...++..++..++. .+.....
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~ 116 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQVADA 116 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CHHHH
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhhhhh
Confidence 65 7888999999999999888 6655444
No 67
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=56.98 E-value=85 Score=31.69 Aligned_cols=95 Identities=3% Similarity=-0.047 Sum_probs=70.7
Q ss_pred CCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEe
Q 010566 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (507)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~ 299 (507)
.++.+|++.. .-.+|...+...+..+...+. ..++.++|++...++-.. -....+++++..|+..+..
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFI--EKGIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEe
Confidence 3566776531 246899999888888776553 236788999998888762 2334477889999998887
Q ss_pred cC--CHHHHHHHhhhhCCeEEEeCcHHHH
Q 010566 300 RG--DVKLLLEDIGELKPTIFCAVPRVLD 326 (507)
Q Consensus 300 ~~--~~~~~~~~i~~~~vt~l~~~P~~l~ 326 (507)
+. .++.+...++..++.+++..+....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 65 7889999999999999998876543
No 68
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=56.67 E-value=46 Score=31.17 Aligned_cols=65 Identities=5% Similarity=-0.089 Sum_probs=47.4
Q ss_pred HHHcC-CCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCC
Q 010566 95 IRTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (507)
Q Consensus 95 L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (507)
..+.| +++|+.|.+....+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34455 488888655555566667777788888998776666655566667789999999999754
No 69
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=53.36 E-value=88 Score=31.74 Aligned_cols=97 Identities=7% Similarity=-0.020 Sum_probs=72.9
Q ss_pred CCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEe
Q 010566 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (507)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~ 299 (507)
.++.+|++.... .| ....+|...|......+...+. ..++.++|++...++-.. --+..+++++..|+..+..
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~--~~Gv~~Gd~V~l~~~~~~-e~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFV--KHGIGKGDYVMLTLKSRY-DFWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECTTCT-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCCH-HHHHHHHHHHhCCEEEEeC
Confidence 467788776532 12 2467899999888888777653 347889999999988763 2234477789999998877
Q ss_pred cC--CHHHHHHHhhhhCCeEEEeCcH
Q 010566 300 RG--DVKLLLEDIGELKPTIFCAVPR 323 (507)
Q Consensus 300 ~~--~~~~~~~~i~~~~vt~l~~~P~ 323 (507)
.. .+..+...++..++.++++.+.
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEESS
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecc
Confidence 65 8899999999999999988654
No 70
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=52.49 E-value=3.4 Score=42.12 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=36.3
Q ss_pred CceEeeHHHHHHcccC-CCCC-CCCCCCCCeEEEEeccCCC-CCCceeeeccHHHHH
Q 010566 196 GLAVYSWDEFLQLGEN-KQFD-LPVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVT 249 (507)
Q Consensus 196 ~~~~~~~~~l~~~~~~-~~~~-~~~~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~ 249 (507)
.+.+.+++++...... ...+ .....++.+.+...||||| |++|-+.+|...+-.
T Consensus 70 ~VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 70 MVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp HSCCBCHHHHHHHHHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 4567778877543211 0111 2334566778899999999 779999999887655
No 71
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=50.73 E-value=60 Score=32.42 Aligned_cols=87 Identities=5% Similarity=-0.148 Sum_probs=67.7
Q ss_pred eeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeE
Q 010566 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTI 317 (507)
Q Consensus 240 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~~~--~~~~~~~~i~~~~vt~ 317 (507)
..+|+..+...+..+...+. ..++.++|++...++-.. -....+++++..|+..+..+. .+..+...++..++..
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 123 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALR--TLGVHPEERILLVMLDTV-ALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARA 123 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSST-HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSE
T ss_pred CCccHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCcH-HHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeE
Confidence 46899999888888777553 346788999999888763 233457788999999887765 7889999999999999
Q ss_pred EEeCcHHHHHHH
Q 010566 318 FCAVPRVLDRIY 329 (507)
Q Consensus 318 l~~~P~~l~~l~ 329 (507)
++..+.....+.
T Consensus 124 vi~~~~~~~~~~ 135 (529)
T 2v7b_A 124 VIASGALVQNVT 135 (529)
T ss_dssp EEEEGGGHHHHH
T ss_pred EEechhhhhHHH
Confidence 999887665543
No 72
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=45.46 E-value=89 Score=29.32 Aligned_cols=64 Identities=8% Similarity=-0.072 Sum_probs=48.7
Q ss_pred HHcC-CCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCC
Q 010566 96 RTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (507)
Q Consensus 96 ~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (507)
.+.| +++|.+..+.....-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 78 ~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 78 EEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3444 578876666666666777778899999998877777666777778899999999998753
No 73
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=44.06 E-value=93 Score=30.78 Aligned_cols=85 Identities=15% Similarity=0.040 Sum_probs=66.6
Q ss_pred eeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeE
Q 010566 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTI 317 (507)
Q Consensus 240 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~~~--~~~~~~~~i~~~~vt~ 317 (507)
-.+|...|......+...+.. .++.++|++...++-.. -....+++++..|+..+..+. ..+.+...++..++.+
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVA--RGLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred cEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 358999998888887775533 36788999999888772 233457788999999888765 8899999999999999
Q ss_pred EEeCcHHHHH
Q 010566 318 FCAVPRVLDR 327 (507)
Q Consensus 318 l~~~P~~l~~ 327 (507)
+++.+.....
T Consensus 104 vi~~~~~~~~ 113 (503)
T 4fuq_A 104 VVCDPSKRDG 113 (503)
T ss_dssp EEECGGGTTT
T ss_pred EEECchhhHH
Confidence 9998765543
No 74
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=43.33 E-value=59 Score=36.91 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=82.3
Q ss_pred CCCCCceeeEeeccCCCCceE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhh-HHHHHHHHhcCCEEEec
Q 010566 57 NPNNRMLGQREIVDGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPL 133 (507)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~v~l 133 (507)
.|+.+|++.+. .|.+|.++ .+|...+... .......++.+++++..+.+-+-+. +.-+++.+..|+.++..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 46778877662 45555443 6788777532 1112235788999998888776554 44577888899988877
Q ss_pred CC--CCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCC
Q 010566 134 YD--TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (507)
Q Consensus 134 ~~--~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 184 (507)
++ ..+++.+...+...++++++........+.+......+.++.+++-+..
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGER 731 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCC
Confidence 65 4678899999999999999988766655544332223556666665544
No 75
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=43.32 E-value=68 Score=28.97 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=50.7
Q ss_pred HHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhH
Q 010566 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (507)
Q Consensus 48 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~ 117 (507)
.++++..+.-|+...+++. |.....|-..|..++.+++.+.+.+|.+.|.+ ..++.-|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccHH
Confidence 4566666789999999988 87777778899999999999999999998763 566666776653
No 76
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=42.75 E-value=91 Score=31.35 Aligned_cols=123 Identities=15% Similarity=-0.009 Sum_probs=77.1
Q ss_pred CCCceeeEeeccCCCCce--EEEeHHHHHHHHHHHHHHHHH-----cCCCCCCEEEEEcCCchh-hHHHHHHHHhcCCEE
Q 010566 59 NNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRT-----CGVEERGKCGIYGVNCPE-WIIGMEACNALGLHC 130 (507)
Q Consensus 59 d~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~-----~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~ 130 (507)
+.+|++... .|.+|.+ ..+|...+...+..++..+.. ..+...+++....+...+ .+..++.++..|+..
T Consensus 175 ~~~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 252 (562)
T 3ite_A 175 NLDAYLLYT--SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCA 252 (562)
T ss_dssp TSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEEC--CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEE
Confidence 444665541 4444443 368999998888887776542 356777888777766544 344467788889887
Q ss_pred EecCCCCCHHHHHHHHHhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCC
Q 010566 131 VPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (507)
Q Consensus 131 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 184 (507)
+........+.+...++..++++++.....+..... .....+.++.+++-+..
T Consensus 253 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~-~~~~~~~lr~~~~gG~~ 305 (562)
T 3ite_A 253 VTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL-VPEDAPHLVYLGVGGEK 305 (562)
T ss_dssp EECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC-CGGGSTTCCEEEEESSC
T ss_pred EecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc-CccccCceEEEEEecCC
Confidence 765543344667788999999999887654433322 22233566666665544
No 77
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=40.64 E-value=1.3e+02 Score=32.69 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=74.1
Q ss_pred CCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEe
Q 010566 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (507)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~ 299 (507)
.++.++++.. .+| -.+|...|......+...+.. .++.++|++...++-.. -.+..+++++..|+..+..
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHK--LGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEee
Confidence 4677777642 222 468999998888887775533 46788999999988772 2334577889999998887
Q ss_pred cC--CHHHHHHHhhhhCCeEEEeCcHHHHHH
Q 010566 300 RG--DVKLLLEDIGELKPTIFCAVPRVLDRI 328 (507)
Q Consensus 300 ~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l 328 (507)
+. .++.+...++..++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 65 889999999999999999987765443
No 78
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=40.62 E-value=1.2e+02 Score=28.20 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=52.6
Q ss_pred EeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEE
Q 010566 79 KTYKEVYDLVIKVV---NAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF 155 (507)
Q Consensus 79 ~Ty~el~~~~~~la---~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 155 (507)
+++.+......... +.++..++++|++|+|+.--..-..++++|....|+.++.++. +++. ..+....+++.+|
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEEE
Confidence 67766544433332 3455678999999999988777777778877777888777765 3443 3556778888777
Q ss_pred ecC
Q 010566 156 VEE 158 (507)
Q Consensus 156 ~~~ 158 (507)
-..
T Consensus 214 ~~~ 216 (348)
T 4eez_A 214 NSG 216 (348)
T ss_dssp EC-
T ss_pred eCC
Confidence 543
No 79
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=35.66 E-value=1.6e+02 Score=27.14 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=43.5
Q ss_pred HHcC-CCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCC
Q 010566 96 RTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (507)
Q Consensus 96 ~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (507)
.+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 4455 466753333444555566666778899998777666555556667888999999998753
No 80
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=35.62 E-value=1.5e+02 Score=28.82 Aligned_cols=63 Identities=6% Similarity=-0.062 Sum_probs=46.2
Q ss_pred HHcCC-CCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecC
Q 010566 96 RTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (507)
Q Consensus 96 ~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 158 (507)
.+.|. ++|....+....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45564 7775555555556666777778999999887776666666677788999999999974
No 81
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=35.49 E-value=2e+02 Score=28.73 Aligned_cols=87 Identities=8% Similarity=-0.152 Sum_probs=66.5
Q ss_pred eeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEecC--C-------HHHHHHH
Q 010566 239 GVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--D-------VKLLLED 309 (507)
Q Consensus 239 ~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~~~--~-------~~~~~~~ 309 (507)
.-.+|...|...+..+...+. ..++.++|++...++-.. -....+++++..|+..+..+. . ...+...
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~ 123 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLL--SLNLKKGDRVALIAETSS-EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGL 123 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHH--HTCCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHH
Confidence 357899999988888777553 336788999999988763 233457788999999887754 2 5778888
Q ss_pred hhhhCCeEEEeCcHHHHHH
Q 010566 310 IGELKPTIFCAVPRVLDRI 328 (507)
Q Consensus 310 i~~~~vt~l~~~P~~l~~l 328 (507)
++..++..++........+
T Consensus 124 l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 124 LASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHHCCSEEEECGGGHHHH
T ss_pred HHhcCCCEEEecHHHHHHH
Confidence 9999999999988765554
No 82
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=34.75 E-value=1.1e+02 Score=30.39 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=61.5
Q ss_pred eeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChhHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeE
Q 010566 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTI 317 (507)
Q Consensus 240 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~vvl~~~--~~~~~~~~i~~~~vt~ 317 (507)
-.+|...+...+..+...+. ..++..+|++...++-.. -.+..+++++..|+..+..+. .++.+...++..++..
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~--~~g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFID--SLALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHH--HTCCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 45799999888888776553 346778888888877762 233457788999998887654 8889999999999999
Q ss_pred EEeCcH
Q 010566 318 FCAVPR 323 (507)
Q Consensus 318 l~~~P~ 323 (507)
++....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 887654
No 83
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=33.67 E-value=1.9e+02 Score=26.47 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=42.4
Q ss_pred HHHcCC-CCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCC
Q 010566 95 IRTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (507)
Q Consensus 95 L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (507)
+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 344454 66766544 44444455566677899998776665555555666788999999998853
No 84
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=33.59 E-value=1e+02 Score=29.17 Aligned_cols=62 Identities=15% Similarity=-0.085 Sum_probs=40.8
Q ss_pred HHHHHcCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCC-----CCHHHHHHHHHhcC--ccEEEec
Q 010566 93 NAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT-----LGAGAVEFIICHSG--VSIAFVE 157 (507)
Q Consensus 93 ~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~ii~~ 157 (507)
..|...++++||.|.+-.+...-+ .-++...|+.++.++.. .+.+++...+..-+ .++|+..
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 334555789999998877665544 34567789887766532 47788888774334 6666643
No 85
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=31.25 E-value=1.5e+02 Score=27.19 Aligned_cols=75 Identities=9% Similarity=0.004 Sum_probs=48.2
Q ss_pred EeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEcCCc-hhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEE
Q 010566 79 KTYKEVYDLVIK---VVNAIRTCGVEERGKCGIYGVNC-PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (507)
Q Consensus 79 ~Ty~el~~~~~~---la~~L~~~gv~~g~~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 154 (507)
+++.+....... ..+.|...++++|++|+|....+ +-..++.+| ...|+.++.+. +.++ ..+++..+++.+
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~ 200 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAEQC 200 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCSEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCCEE
Confidence 577776544332 22345567899999999997444 555555555 46688766554 3444 566778888877
Q ss_pred EecC
Q 010566 155 FVEE 158 (507)
Q Consensus 155 i~~~ 158 (507)
|-..
T Consensus 201 i~~~ 204 (321)
T 3tqh_A 201 INYH 204 (321)
T ss_dssp EETT
T ss_pred EeCC
Confidence 6543
No 86
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=30.69 E-value=1.7e+02 Score=26.99 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=49.3
Q ss_pred EeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEE
Q 010566 79 KTYKEVYDLVIK---VVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF 155 (507)
Q Consensus 79 ~Ty~el~~~~~~---la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 155 (507)
+++.+....... ..+.|...++++|++|+|..--.+-..++.+|- ..|+.++.+.. +++.+. +++..+++.++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~i 215 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEVAV 215 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSEEE
T ss_pred CCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCEEE
Confidence 677765432222 224455678999999999876556666666665 56887776655 444444 56778888877
Q ss_pred ecC
Q 010566 156 VEE 158 (507)
Q Consensus 156 ~~~ 158 (507)
-..
T Consensus 216 ~~~ 218 (340)
T 3s2e_A 216 NAR 218 (340)
T ss_dssp ETT
T ss_pred eCC
Confidence 544
No 87
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=30.22 E-value=2.1e+02 Score=26.07 Aligned_cols=64 Identities=9% Similarity=-0.045 Sum_probs=41.7
Q ss_pred HHHcCC-CCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCC
Q 010566 95 IRTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (507)
Q Consensus 95 L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (507)
+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334454 66665544 33344445666677889987776655544455566788999999998864
No 88
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=29.62 E-value=2.8e+02 Score=25.14 Aligned_cols=64 Identities=6% Similarity=-0.049 Sum_probs=42.1
Q ss_pred HHHcC-CCCCC--EEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCC
Q 010566 95 IRTCG-VEERG--KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (507)
Q Consensus 95 L~~~g-v~~g~--~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (507)
+.+.| +++|+ .|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33445 46776 4333 33334445566678899998776655545556667788899999999865
No 89
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=29.10 E-value=1.7e+02 Score=27.22 Aligned_cols=60 Identities=7% Similarity=-0.038 Sum_probs=38.9
Q ss_pred CCCCCCEEEEEcCCch------hhHHHHHH-HHhcCCEEEecCCCC------------CHHHHHHHHHhcCccEEEecC
Q 010566 99 GVEERGKCGIYGVNCP------EWIIGMEA-CNALGLHCVPLYDTL------------GAGAVEFIICHSGVSIAFVEE 158 (507)
Q Consensus 99 gv~~g~~V~i~~~n~~------~~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~~ 158 (507)
-+++||+|+|++|.+. +-+..... +-..|..++.-.... -.+++..++.+-+++.|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999863 12222222 335688776543221 124677888888899999985
No 90
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=28.40 E-value=2.8e+02 Score=25.16 Aligned_cols=63 Identities=10% Similarity=-0.057 Sum_probs=42.8
Q ss_pred HHcC-CCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCC
Q 010566 96 RTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (507)
Q Consensus 96 ~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (507)
.+.| +++|+.|.... .+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 53 ~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 53 EKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKE 116 (303)
T ss_dssp HHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3445 36776655544 344445566677899998777666555556667888999999999863
No 91
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=28.21 E-value=1.9e+02 Score=26.66 Aligned_cols=62 Identities=19% Similarity=0.133 Sum_probs=41.7
Q ss_pred HHH-HHcCCCCCCEEEEEcCCc-hhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEec
Q 010566 93 NAI-RTCGVEERGKCGIYGVNC-PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVE 157 (507)
Q Consensus 93 ~~L-~~~gv~~g~~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 157 (507)
+.| +..++++|++|.|....+ +-..++.+| ...|+.++.+.. +.+.+..+.+..+++.++-.
T Consensus 139 ~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 139 FALLDVGQPKNGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAG--GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp HHHHHTTCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHHHHHHTTCCSEEEET
T ss_pred HHHHHhcCCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEEC
Confidence 345 346899999999999855 445544444 567887776654 45666655577888776643
No 92
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=27.67 E-value=1.3e+02 Score=28.05 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=47.0
Q ss_pred EeHHHHHHHHHH---HHHHHHHcCCC-CCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEE
Q 010566 79 KTYKEVYDLVIK---VVNAIRTCGVE-ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (507)
Q Consensus 79 ~Ty~el~~~~~~---la~~L~~~gv~-~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 154 (507)
+++.+....... ..+.|.+.+++ +|++|+|...-.+-..++.+|- ..|+.++.+.. +.+.+..+.+..+++.+
T Consensus 153 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v 229 (357)
T 2cf5_A 153 MAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAK-AMGHHVTVISS--SNKKREEALQDLGADDY 229 (357)
T ss_dssp CCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHH-HHTCEEEEEES--STTHHHHHHTTSCCSCE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--ChHHHHHHHHHcCCcee
Confidence 677664322111 12345567888 9999999986445666666655 46887666665 33444444447788776
Q ss_pred EecC
Q 010566 155 FVEE 158 (507)
Q Consensus 155 i~~~ 158 (507)
+...
T Consensus 230 i~~~ 233 (357)
T 2cf5_A 230 VIGS 233 (357)
T ss_dssp EETT
T ss_pred eccc
Confidence 6544
No 93
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=27.51 E-value=2.2e+02 Score=26.49 Aligned_cols=63 Identities=13% Similarity=-0.009 Sum_probs=41.3
Q ss_pred HHcC-CCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCC
Q 010566 96 RTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (507)
Q Consensus 96 ~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (507)
.+.| +++|+.|.... .+-.-..+.++|...|..++.+-|...+......++..++++++++..
T Consensus 70 ~~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 70 IKDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3445 46776555543 244444555677789987766655545556667788899999998753
No 94
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=27.21 E-value=2.4e+02 Score=26.44 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=40.6
Q ss_pred HHHcCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCC----CCHHHHHHHHHhc--CccEEEecC
Q 010566 95 IRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT----LGAGAVEFIICHS--GVSIAFVEE 158 (507)
Q Consensus 95 L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~ii~~~ 158 (507)
+...++++||.|.+..+....+... +...|+.++.++.. .+.+++...++.. ++++|+...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVAP---ICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTHH---HHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHHH---HHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 3334578899998888877766433 44578877666542 4677888888754 567666654
No 95
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=27.00 E-value=2.1e+02 Score=26.66 Aligned_cols=78 Identities=13% Similarity=-0.007 Sum_probs=48.4
Q ss_pred EeHHHHHHHH--HHHH-HHHHH-cCCCCCCEEEEEcCC-chhhHHHHHHHHhcCCEEE-ecCCCCCHHHHHHHHHhcCcc
Q 010566 79 KTYKEVYDLV--IKVV-NAIRT-CGVEERGKCGIYGVN-CPEWIIGMEACNALGLHCV-PLYDTLGAGAVEFIICHSGVS 152 (507)
Q Consensus 79 ~Ty~el~~~~--~~la-~~L~~-~gv~~g~~V~i~~~n-~~~~~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~~ 152 (507)
+++.+..... -..| +.|.+ .++++|++|+|.... .+-.+++.+|- ..|+.++ ...+....++...+++..+++
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 5777654421 1122 34444 489999999999874 45666666655 4687544 444444445555667788998
Q ss_pred EEEec
Q 010566 153 IAFVE 157 (507)
Q Consensus 153 ~ii~~ 157 (507)
.+|..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 87753
No 96
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=26.77 E-value=1.9e+02 Score=26.91 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=39.2
Q ss_pred CCCCCCEEEEEcCCchh------hHHHHHH-HHhcCCEEEecCCCC--------C----HHHHHHHHHhcCccEEEecC
Q 010566 99 GVEERGKCGIYGVNCPE------WIIGMEA-CNALGLHCVPLYDTL--------G----AGAVEFIICHSGVSIAFVEE 158 (507)
Q Consensus 99 gv~~g~~V~i~~~n~~~------~~~~~lA-~~~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~ii~~~ 158 (507)
-+++||+|+|++|.+.- -+..... +-..|..++.-.... + .+++..++.+-++++|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999999842 2222232 234688876532111 1 13677777778899999986
No 97
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=26.53 E-value=2.2e+02 Score=21.88 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=39.8
Q ss_pred HHHHHHcCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEec--CCCCCHHHHH
Q 010566 92 VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPL--YDTLGAGAVE 143 (507)
Q Consensus 92 a~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l--~~~~~~~~l~ 143 (507)
+.+|.+.|+.+...+.+...+..+.+.++-=++++|...+.+ .+..+..+.+
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~R 100 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARK 100 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHH
Confidence 678888999988888888888889999999999999743333 3456665544
No 98
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=26.38 E-value=1e+02 Score=27.72 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=45.6
Q ss_pred HHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh
Q 010566 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115 (507)
Q Consensus 48 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~ 115 (507)
.++++..+..|+...+.+. |...-.+-..++.++.+++.+.++.|.+.|. -..++.-|+..
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~----d~iviaCNTas 77 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLG---DTARCPYGPRSREEVRQFTWEMTEHLLDLNI----KMLVIACNTAT 77 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC----SEEEECCHHHH
T ss_pred HHHHHHHHHCCCCCEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCchhh
Confidence 4566666779999888877 7665555567899999999999999988765 24555555654
No 99
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=26.23 E-value=1.4e+02 Score=20.74 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=34.9
Q ss_pred EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhHHHHHHHHhcCCE
Q 010566 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLH 129 (507)
Q Consensus 77 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 129 (507)
..+.+.+|.+ .+.+.+..+++.|.++|........+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 5678877754 344456788899999999988877777777788864
No 100
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=26.11 E-value=1.1e+02 Score=27.56 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhhH
Q 010566 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (507)
Q Consensus 48 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~~ 117 (507)
.++++..+.-|+...+... |...-+|-.-+|.++.+++.+.+.+|.+.|.+ ..++.-|+...+
T Consensus 38 tv~~~i~~~lP~e~~iy~~---D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d----~IVIACNTa~~~ 100 (274)
T 3uhf_A 38 SVLKSLYEARLFDEIIYYG---DTARVPYGVKDKDTIIKFCLEALDFFEQFQID----MLIIACNTASAY 100 (274)
T ss_dssp HHHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCS----EEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEe---cCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCChhHH
Confidence 3456666678999999888 87666777789999999999999999877663 566666776644
No 101
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=26.08 E-value=2.2e+02 Score=26.29 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 010566 400 HVETFLRV 407 (507)
Q Consensus 400 ~~~~~~~~ 407 (507)
++.+.+.+
T Consensus 306 ~~~~~l~~ 313 (384)
T 1eg5_A 306 TLQNLLSG 313 (384)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 34444443
No 102
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=25.97 E-value=1.7e+02 Score=27.28 Aligned_cols=64 Identities=11% Similarity=-0.001 Sum_probs=43.8
Q ss_pred HHHHH--cCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCC
Q 010566 93 NAIRT--CGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (507)
Q Consensus 93 ~~L~~--~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (507)
+.|.+ .++++|++|+|..--.+-..++.+|-...|+.++.+.. +++.+. +++..+++.+|-..+
T Consensus 175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~~~~ 240 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLK-LAERLGADHVVDARR 240 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHH-HHHHTTCSEEEETTS
T ss_pred HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHH-HHHHhCCCEEEeccc
Confidence 44566 78999999999988556667777766543887666664 344443 456788888775443
No 103
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=25.77 E-value=1.8e+02 Score=26.90 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=46.4
Q ss_pred EeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEE
Q 010566 79 KTYKEVYDLVIK---VVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF 155 (507)
Q Consensus 79 ~Ty~el~~~~~~---la~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 155 (507)
+++.+....... ..+.|.+.++++|++|+|..--.+-..++.+|- ..|+.++.+..+. +.+ .+++..+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~-~~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKK-QDALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTH-HHHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHH-HHHHhcCCCeec
Confidence 667665432222 124466678999999999876445566666654 5688777766533 233 245668888888
No 104
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=25.43 E-value=2.6e+02 Score=27.89 Aligned_cols=61 Identities=13% Similarity=0.018 Sum_probs=44.0
Q ss_pred HcC-CCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecC
Q 010566 97 TCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (507)
Q Consensus 97 ~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 158 (507)
+.| +++|+.|.- ...+-.-..+.++|...|..++.+-|...+..-...++..++.++++..
T Consensus 106 ~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 106 EQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 445 578887654 3444455666678888899887776665566667888999999999875
No 105
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=25.16 E-value=2e+02 Score=27.31 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=39.3
Q ss_pred CCCCCCEEEEEcCCchh------hHHHHHH-HHhcCCEEEecCCCC--------C----HHHHHHHHHhcCccEEEecC
Q 010566 99 GVEERGKCGIYGVNCPE------WIIGMEA-CNALGLHCVPLYDTL--------G----AGAVEFIICHSGVSIAFVEE 158 (507)
Q Consensus 99 gv~~g~~V~i~~~n~~~------~~~~~lA-~~~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~ii~~~ 158 (507)
-+++||+|+|++|.+.- -+..... +-..|..++.-+... + .+++..++..-++++|++..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 58999999999999842 2222222 334788876543211 1 13577777777889999986
No 106
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=25.11 E-value=87 Score=27.88 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh
Q 010566 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115 (507)
Q Consensus 48 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~ 115 (507)
.++++..+..|+...+++. |.....+...++.++.+++.+.++.|.+.|. | ..++.-|+..
T Consensus 14 tv~~~l~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d-~iviaCNTa~ 74 (255)
T 2jfz_A 14 SVLKSLLKARLFDEIIYYG---DSARVPYGTKDPTTIKQFGLEALDFFKPHEI---E-LLIVACNTAS 74 (255)
T ss_dssp HHHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHGGGCC---S-CEEECCHHHH
T ss_pred HHHHHHHHHCCCCCEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---C-EEEEeCchhh
Confidence 3455566678999999887 7666666667999999999999999988776 3 3444445544
No 107
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=25.09 E-value=2.3e+02 Score=23.21 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=36.6
Q ss_pred HHHHHHcCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEec--CCCCCHHHHH
Q 010566 92 VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPL--YDTLGAGAVE 143 (507)
Q Consensus 92 a~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l--~~~~~~~~l~ 143 (507)
+.+|.+.|+.+...+.+...+..+.+.++-=|+++|...+.| .+..+..+.+
T Consensus 89 ~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~~aVl~Wl~~l~~~~~R 142 (161)
T 1oft_A 89 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARK 142 (161)
T ss_dssp HHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTCEEEEEECCSSCCHHHHH
T ss_pred HHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCCccEEEECCCcCChHHHH
Confidence 677778888887777777777788888888888888743333 4455555444
No 108
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=25.03 E-value=3.4e+02 Score=24.75 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=40.2
Q ss_pred HHH-cCCCCCCEEEEEcCCc-hhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecC
Q 010566 95 IRT-CGVEERGKCGIYGVNC-PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (507)
Q Consensus 95 L~~-~gv~~g~~V~i~~~n~-~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 158 (507)
+.+ .++++|++|+|....+ +-..++.+| ...|+.++.+.. +.+.+. .++..+++.++...
T Consensus 140 l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~~ 201 (334)
T 3qwb_A 140 TNEAYHVKKGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINAS 201 (334)
T ss_dssp HHTTSCCCTTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHTTCSEEEETT
T ss_pred HHHhccCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeCC
Confidence 444 3789999999998555 455555554 467888776665 455554 56677888776543
No 109
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=25.03 E-value=1.4e+02 Score=26.80 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhh
Q 010566 49 VFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (507)
Q Consensus 49 ~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n~~~~ 116 (507)
+++...+.-|+...+... |...-.+-.-+|.++.+++.+.++.|.+.|.+ ..++.-|+...
T Consensus 22 v~~~i~~~lp~~~~iy~~---D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~----~iVIACNTa~~ 82 (268)
T 3out_A 22 IVKNLMSILPNEDIIYFG---DIARIPYGTKSRATIQKFAAQTAKFLIDQEVK----AIIIACNTISA 82 (268)
T ss_dssp HHHHHHHHCTTCCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHH
T ss_pred HHHHHHHHCCCCcEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCChHH
Confidence 455555678988888887 77666777789999999999999999987763 55566666654
No 110
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=24.54 E-value=2.1e+02 Score=26.58 Aligned_cols=60 Identities=8% Similarity=0.011 Sum_probs=39.4
Q ss_pred CCCCCCEEEEEcCCchh------hHHHHHHH-HhcCCEEEecCCCC--------C----HHHHHHHHHhcCccEEEecC
Q 010566 99 GVEERGKCGIYGVNCPE------WIIGMEAC-NALGLHCVPLYDTL--------G----AGAVEFIICHSGVSIAFVEE 158 (507)
Q Consensus 99 gv~~g~~V~i~~~n~~~------~~~~~lA~-~~~G~~~v~l~~~~--------~----~~~l~~~l~~~~~~~ii~~~ 158 (507)
-+++||+|+|++|.+.- -+...... -..|..++.-+... + .+++..++..-+++.|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999999852 22222322 34788877543211 1 23677777778889999986
No 111
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=24.37 E-value=2.3e+02 Score=25.33 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhh
Q 010566 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEW 116 (507)
Q Consensus 48 ~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n~~~~ 116 (507)
.++++..+..|+...+++. |...-.+-..+..++.+++.+.+..|.+ .|.+ ..++.-|+...
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~g~d----~iViACNTas~ 79 (272)
T 1zuw_A 17 TVAKEIMRQLPKENIIYVG---DTKRCPYGPRPEEEVLQYTWELTNYLLENHHIK----MLVIACNTATA 79 (272)
T ss_dssp HHHHHHHHHSTTCCEEEEE---CGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCCS----EEEECCHHHHH
T ss_pred HHHHHHHHhCCCCcEEEec---cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCC----EEEEeCchhhH
Confidence 4577777789999888877 6665566668999999999999999998 7763 45555556553
No 112
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=24.23 E-value=2.3e+02 Score=27.32 Aligned_cols=63 Identities=11% Similarity=-0.001 Sum_probs=33.6
Q ss_pred EEEcCCchhhHH-HHHHHHhcCCEEEecCCCCCHH--HHHHHHHhcCccEEEecCCChhHHhhcCC
Q 010566 107 GIYGVNCPEWII-GMEACNALGLHCVPLYDTLGAG--AVEFIICHSGVSIAFVEEKKIPEMLKTFP 169 (507)
Q Consensus 107 ~i~~~n~~~~~~-~~lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~ii~~~~~~~~~~~~~~ 169 (507)
+++..+..+.+. ++.++..-|-.++.-++.+..- .+...+...++++++++......+.+.+.
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~ 165 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACD 165 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhC
Confidence 455555554443 3344555565555555544332 12225666777777777665555555543
No 113
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=24.11 E-value=3.2e+02 Score=25.14 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=44.4
Q ss_pred HHcC-CCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecCC
Q 010566 96 RTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (507)
Q Consensus 96 ~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 159 (507)
.+.| +++++.|.-. ..+-.-..+.++|.+.|..++.+-|...+......++..++++++++..
T Consensus 65 ~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 65 EADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3445 4677776554 3455556677778888998776666655566677888999999999864
No 114
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=23.59 E-value=1.2e+02 Score=23.27 Aligned_cols=75 Identities=9% Similarity=-0.069 Sum_probs=44.4
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 010566 31 FAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGI 108 (507)
Q Consensus 31 ~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 108 (507)
.+..+.....+......+.+....+.+|+....+..|. |. .+. ..+-+.==.+|+..++.+|.+.|+.+.+++.+
T Consensus 20 ~F~~~s~~L~~~~~~~L~~~a~~l~~~~~~~i~I~Ght-D~-~g~-~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~ 94 (123)
T 3oon_A 20 EFYPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEGHT-EQ-FGL-EEEMHELSEKRARAIGNYLIKMKVKDKDQILF 94 (123)
T ss_dssp EBCTTSCCBCGGGHHHHHHHHHHHHHSCSCCEEEEECC-CS-CCC-HHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred EeCCCChhcCHHHHHHHHHHHHHHHHCCCceEEEEEEe-CC-CCC-hHHHHHHHHHHHHHHHHHHHHcCCCchHeEEE
Confidence 33444444445556666677777888998554444321 22 111 22333344578999999999999974555544
No 115
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=23.55 E-value=2.6e+02 Score=25.71 Aligned_cols=78 Identities=9% Similarity=-0.077 Sum_probs=50.6
Q ss_pred EeHHHHHHHHHH---HHHHHHHc--CCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccE
Q 010566 79 KTYKEVYDLVIK---VVNAIRTC--GVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153 (507)
Q Consensus 79 ~Ty~el~~~~~~---la~~L~~~--gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 153 (507)
+++.+....... ..+.|.+. ++++|++|+|..--.+-..++.+|-..-|+.++.++. +.+.+ .+++..+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~~-~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDRL-ALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHH-HHHHHcCCCE
Confidence 566665433322 22445554 7899999999987556777777776665777777665 34444 4567788888
Q ss_pred EEecCC
Q 010566 154 AFVEEK 159 (507)
Q Consensus 154 ii~~~~ 159 (507)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 876544
No 116
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=23.53 E-value=2.3e+02 Score=26.56 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=41.7
Q ss_pred HHHHHcCCC-CCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecC
Q 010566 93 NAIRTCGVE-ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (507)
Q Consensus 93 ~~L~~~gv~-~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 158 (507)
+.|.+.+++ +|++|+|...-.+-..++.+|- ..|+.++.+.. +.+.+....+..+++.++-..
T Consensus 177 ~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 177 SPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEETT
T ss_pred HHHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEecc
Confidence 345667888 9999999986445566666654 56887666654 345555555577887766443
No 117
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=23.11 E-value=2.8e+02 Score=26.01 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=40.7
Q ss_pred HHHHHcCCCCCCEEEEEcCCchhhHHHHHHHHhcCC-EEEecCCCCCHHHHHHHHHhcCccEEEec
Q 010566 93 NAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGL-HCVPLYDTLGAGAVEFIICHSGVSIAFVE 157 (507)
Q Consensus 93 ~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 157 (507)
+.|...++++|++|+|..--.+-.+++.+|- ..|+ .++.+.. +++. ..+++..+++.++-.
T Consensus 173 ~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~~ 234 (370)
T 4ej6_A 173 HGVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTR--QATK-RRLAEEVGATATVDP 234 (370)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEECT
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEECC
Confidence 3455678999999999987445556555554 5787 6666655 3443 346677888877643
No 118
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=23.07 E-value=2.3e+02 Score=26.30 Aligned_cols=53 Identities=6% Similarity=-0.083 Sum_probs=25.0
Q ss_pred CCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCC-------CCHHHHHHHHHhcCccEEEe
Q 010566 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT-------LGAGAVEFIICHSGVSIAFV 156 (507)
Q Consensus 101 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~ii~ 156 (507)
++||.|.+..+.... ...++...|+.++.++.. .+.+++...++..++++|+.
T Consensus 107 ~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i 166 (391)
T 3dzz_A 107 SPGDQILVQEPVYNM---FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF 166 (391)
T ss_dssp CTTCEEEECSSCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCeEEECCCCcHH---HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEE
Confidence 455555544443332 222344555555544331 45555655555444555444
No 119
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=22.61 E-value=2.1e+02 Score=21.71 Aligned_cols=64 Identities=13% Similarity=0.012 Sum_probs=37.6
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCC
Q 010566 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG 104 (507)
Q Consensus 38 ~~~~~~~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~ 104 (507)
...+......+.+....+.+|+....+..+. |. .|. ..+-+.==.+|+..++.+|.+.|+.+..
T Consensus 16 ~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ght-D~-~G~-~~~N~~LS~~RA~aV~~~L~~~Gi~~~r 79 (118)
T 2hqs_H 16 DIRSDFAQMLDAHANFLRSNPSYKVTVEGHA-DE-RGT-PEYNISLGERRANAVKMYLQGKGVSADQ 79 (118)
T ss_dssp CCCGGGHHHHHHHHHHHHHCTTCCEEEEECC-CS-SSC-HHHHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCcEEEEEEEC-CC-CCC-HHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 3344445555666667778887554544321 22 121 1233333466899999999999986543
No 120
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=22.47 E-value=2.3e+02 Score=26.59 Aligned_cols=62 Identities=18% Similarity=0.152 Sum_probs=40.2
Q ss_pred HHHHHcCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEEEecC
Q 010566 93 NAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (507)
Q Consensus 93 ~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 158 (507)
+.|.+.++++|++|+|...-.+-..++.+|- ..|+.++.+.. +++.+. .++..+++.++-..
T Consensus 185 ~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~Vi~~~~--~~~~~~-~a~~lGa~~vi~~~ 246 (369)
T 1uuf_A 185 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVAFTT--SEAKRE-AAKALGADEVVNSR 246 (369)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--SGGGHH-HHHHHTCSEEEETT
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHH-HHHHcCCcEEeccc
Confidence 4455678999999999987555666666664 46887665554 333333 34457787766443
No 121
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=22.28 E-value=60 Score=29.29 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcC
Q 010566 89 IKVVNAIRTCGVEERGKCGIYGV 111 (507)
Q Consensus 89 ~~la~~L~~~gv~~g~~V~i~~~ 111 (507)
..+.+.|+++||++||.|.+...
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsS 40 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSS 40 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEEec
Confidence 45677899999999999999976
No 122
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=21.95 E-value=2.2e+02 Score=26.56 Aligned_cols=78 Identities=8% Similarity=-0.039 Sum_probs=47.2
Q ss_pred EeHHHHHHHHH--HHH-HHHHH-cCCCCC-CEEEEEcC-CchhhHHHHHHHHhcCCEEEecCCCCCH-HHHHHHHHhcCc
Q 010566 79 KTYKEVYDLVI--KVV-NAIRT-CGVEER-GKCGIYGV-NCPEWIIGMEACNALGLHCVPLYDTLGA-GAVEFIICHSGV 151 (507)
Q Consensus 79 ~Ty~el~~~~~--~la-~~L~~-~gv~~g-~~V~i~~~-n~~~~~~~~lA~~~~G~~~v~l~~~~~~-~~l~~~l~~~~~ 151 (507)
+++.+...... ..| +.|.+ .++++| ++|+|..- -.+-..++.+|- ..|+.++.+...... ++....++..++
T Consensus 139 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (364)
T 1gu7_A 139 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELGA 217 (364)
T ss_dssp CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHTC
T ss_pred CCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcCC
Confidence 77776543221 122 33555 379999 99999987 445666666665 468866555432222 344455577888
Q ss_pred cEEEec
Q 010566 152 SIAFVE 157 (507)
Q Consensus 152 ~~ii~~ 157 (507)
+.+|-.
T Consensus 218 ~~vi~~ 223 (364)
T 1gu7_A 218 TQVITE 223 (364)
T ss_dssp SEEEEH
T ss_pred eEEEec
Confidence 877653
No 123
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=20.97 E-value=3.7e+02 Score=24.51 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=33.9
Q ss_pred CCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecC--C----CCCHHHHHHHHHh----cCccEEEecC
Q 010566 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLY--D----TLGAGAVEFIICH----SGVSIAFVEE 158 (507)
Q Consensus 100 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~--~----~~~~~~l~~~l~~----~~~~~ii~~~ 158 (507)
+++||.|.+..+....+... +...|+.++.++ . ..+.+++...++. -++++++...
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 46788887776655544433 566777766655 2 2356777777764 2455555543
No 124
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=20.87 E-value=2.6e+02 Score=26.08 Aligned_cols=74 Identities=11% Similarity=-0.027 Sum_probs=46.3
Q ss_pred EeHHHHHHHHHHH---HHHH-HHcCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhcCccEE
Q 010566 79 KTYKEVYDLVIKV---VNAI-RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (507)
Q Consensus 79 ~Ty~el~~~~~~l---a~~L-~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 154 (507)
+++.+........ .+.| ...++++|++|+|...-.+-..++.+| ...|+.++.+.. +.+.+. +++..+++.+
T Consensus 162 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla-~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~v 237 (363)
T 3uog_A 162 LDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIA-KATGAEVIVTSS--SREKLD-RAFALGADHG 237 (363)
T ss_dssp SCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHH-HHTTCEEEEEES--CHHHHH-HHHHHTCSEE
T ss_pred CCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEec--CchhHH-HHHHcCCCEE
Confidence 6777765432222 2334 346899999999998433455555555 467887776664 444444 3677888877
Q ss_pred Ee
Q 010566 155 FV 156 (507)
Q Consensus 155 i~ 156 (507)
+-
T Consensus 238 i~ 239 (363)
T 3uog_A 238 IN 239 (363)
T ss_dssp EE
T ss_pred Ec
Confidence 75
No 125
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=20.81 E-value=2.3e+02 Score=26.38 Aligned_cols=56 Identities=13% Similarity=0.019 Sum_probs=28.2
Q ss_pred cCCCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCC-----CCHHHHHHHHHhcCccEEEec
Q 010566 98 CGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT-----LGAGAVEFIICHSGVSIAFVE 157 (507)
Q Consensus 98 ~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~ii~~ 157 (507)
.++++||.|.+..+....+. -++...|+.++.++.. .+.+++...++. ++++|+..
T Consensus 74 ~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 74 LGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp TTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred cCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 34567777666555544332 3344566655544321 345556555543 44555443
No 126
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=20.55 E-value=68 Score=29.19 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=22.4
Q ss_pred EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Q 010566 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGV 111 (507)
Q Consensus 77 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ 111 (507)
+.+|-.+| .+.|+++||++||.|.+...
T Consensus 20 ~~~T~~~L-------~~~L~~LGI~~Gd~llVHsS 47 (286)
T 3sma_A 20 ELVTRDRL-------ASDLAALGVRPGGVLLVHAS 47 (286)
T ss_dssp CEECHHHH-------HHHHHHHTCCTTCEEEEEEC
T ss_pred CCcCHHHH-------HHHHHHcCCCCCCEEEEEec
Confidence 34676655 56899999999999999876
No 127
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=20.36 E-value=69 Score=29.01 Aligned_cols=22 Identities=5% Similarity=0.164 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCCCCCEEEEEcC
Q 010566 90 KVVNAIRTCGVEERGKCGIYGV 111 (507)
Q Consensus 90 ~la~~L~~~gv~~g~~V~i~~~ 111 (507)
.+.+.|+++||++||.|.+...
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsS 38 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSS 38 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEEEec
Confidence 3567899999999999999876
No 128
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=20.11 E-value=4.1e+02 Score=24.68 Aligned_cols=55 Identities=2% Similarity=-0.083 Sum_probs=29.8
Q ss_pred CCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCCCCHHHHHHHHHhc---CccEEEecC
Q 010566 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHS---GVSIAFVEE 158 (507)
Q Consensus 100 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~ii~~~ 158 (507)
.++||.|.+..+....+. -++...|+.++.++. .+.+++...++.. ++++|++..
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 456676666655544332 234456666665543 4556666666553 455555443
No 129
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=20.04 E-value=3.7e+02 Score=25.10 Aligned_cols=58 Identities=12% Similarity=-0.037 Sum_probs=34.1
Q ss_pred CCCCCEEEEEcCCchhhHHHHHHHHhcCCEEEecCCC----CCHHHHHHHHHhcCccEEEecC
Q 010566 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT----LGAGAVEFIICHSGVSIAFVEE 158 (507)
Q Consensus 100 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~ 158 (507)
+++||.|.+..+...... ..-++...|+.++.++.. .+.+++...++..++++|+...
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 144 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH 144 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc
Confidence 578888877766543211 222455567665544332 3667777777755667666654
No 130
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=20.02 E-value=2.1e+02 Score=19.24 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCCCCceEEEeHHHHHHHHHHH
Q 010566 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKV 91 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~l 91 (507)
..|.+.|......+|+.+.++.. |.+ .+|..+.+-.+.+
T Consensus 30 ~~L~~~l~~~~~~~~~~~V~I~a---D~~------~~y~~vv~vmd~l 68 (74)
T 2jwk_A 30 EMVTQLSRQEFDKDNNTLFLVGG---AKE------VPYEEVIKALNLL 68 (74)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEE---CTT------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCceEEEEc---CCC------CCHHHHHHHHHHH
Confidence 56777788888889998888877 654 8998887755544
Done!