BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010567
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 89 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 148
LD+ ++ +S N I + LT L + N L +P I +LS L LDL NR+ S+P+
Sbjct: 229 LDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 149 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 191
+ C L FY +N ++ LP E G L L L + N L++
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 13 RLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 72
+ L L ++ NS+ ++P EI + + L D S N+L LP+ LG C L F +N
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM 304
Query: 73 ITSLPEDLADCSKMSKLDVEGNKL 96
+T+LP + + + L VEGN L
Sbjct: 305 VTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 286 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 343
L L G +L+ +P+EI + LDLS N + LP EL SC L+ N + P
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLP 309
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 16 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS 75
+ +LD+S I I I L + + N L ELP+ + NL S+N +TS
Sbjct: 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284
Query: 76 LPEDLADCSKMSKLDVEGNKLTVL 99
LP +L C ++ N +T L
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTL 308
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 286 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 343
L L + + I + I++ +T+L L+ NS+ ELP E+ + ++L+ L LS N++ P
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 373 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQN 432
D+ LQI ++S NI L LYL L E P S N
Sbjct: 230 DLSNLQIFNISANIFKYD---------FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN 280
Query: 433 SLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPL-RSIRRTILDR 491
L S+P + L DN ++ Q L ++GNPL + + + ++
Sbjct: 281 RLTSLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339
Query: 492 GTKAVLKYLKDKIPE 506
++ YL+D PE
Sbjct: 340 SVTGLIFYLRDNRPE 354
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 44 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 103
D S+ Q+ + +++ + L+ + N +T LP ++ + S + LD+ N+LT L L
Sbjct: 230 DLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289
Query: 104 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 141
S L N++ +P G+L L L + N
Sbjct: 290 -GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 10/203 (4%)
Query: 260 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL---SRNSI 316
N + + + L + + + +K+L L+ LS++PS+ + +TKL L + N +
Sbjct: 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKL 73
Query: 317 QELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 375
Q LP + +L+TL ++ NK++ P + D N L+ +P F +
Sbjct: 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 376 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXX-XXXXXXXXSQNS 433
L L L YN + SLP+ F L L+EL L QL+ P N
Sbjct: 134 KLTYLSLGYNELQSLPKG-VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 434 LQSIPEG-FKNLTSLTELDLSDN 455
L+ +PEG F +L L L L +N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 83/202 (41%), Gaps = 31/202 (15%)
Query: 293 LSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAIXXXXX 351
L+AIPS I + KLDL N + LP + L+ L L+ NK++ P I
Sbjct: 28 LTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI----- 80
Query: 352 XXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 410
FK++ L+ L ++ N + +LP F L +L EL L R Q
Sbjct: 81 -------------------FKELKNLETLWVTDNKLQALPIGV-FDQLVNLAELRLDRNQ 120
Query: 411 LRE-APTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXX 468
L+ P N LQS+P+G F LTSL EL L +N +
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 469 XXXQALRLDGNPLRSIRRTILD 490
+ L+LD N L+ + D
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFD 202
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 44 DCSSNQLKELPSSL---GRCLNLSDFKAS-------------------NNCITSLPEDL- 80
DCSS +L +PS++ + L+L K S +N + +LP +
Sbjct: 22 DCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 81 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLH 139
+ + L V NKL L + L EL +N L + P SL++L L L
Sbjct: 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 140 QNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 190
N + S+P + SL E + NN L +P KL++L TL L +NQLK
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP-SSLGRCLNLSDFK 67
F RL L+ L ++ N + +P I L + N+L+ LP + +NL++ +
Sbjct: 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 68 ASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE- 125
N + SLP + D +K++ L + N+L L + T L EL N L +PE
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 126 TIGSLSRLIRLDLHQNRILSIPSS 149
L+ L L L N++ +P
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEG 199
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 432 NSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILD 490
N LQ++P G FK L +L L ++DN + A LRLD N L+S+ + D
Sbjct: 71 NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130
Query: 491 RGTKAVLKYL 500
TK L YL
Sbjct: 131 SLTK--LTYL 138
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 284 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 342
+ L+L G L I S + E +T L L+ N +Q LP + +L+ L+L N+++
Sbjct: 66 RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 343 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 401
PD + +N L+ +P F + L LDLSYN + SLPE F L L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-VFDKLTQL 183
Query: 402 QELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 455
++L L QN L+S+P+G F LTSL + L DN
Sbjct: 184 KDLRLY-----------------------QNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 370 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXX 428
K++ L L L+ N + SLP N F L +L+EL L QL+ P
Sbjct: 80 ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 429 X-SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRR 486
+ N LQS+P+G F LT+LTELDLS N + + + LRL N L+S+
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 487 TILDRGTKAVLKYLKD 502
+ DR T +L D
Sbjct: 199 GVFDRLTSLQYIWLHD 214
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 80 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDL 138
L + + ++ L + GN+L L N + T L EL+ +N L +P+ + L+ L L+L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 139 HQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 190
N++ S+P + +L E + N L +LP KL++L L L+ NQLK
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 38 TALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPEDLAD-CSKMSKLDVEGNK 95
T L + NQL+ LP+ + + NL + N + SLP+ + D + ++ L++ N+
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 96 LTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI 150
L L + T LTEL S N L +PE + L++L L L+QN++ S+P +
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELPSSL-GRCLNLSDFK 67
VFD+L LK L + N + +PD + T L + + NQL+ LP + + NL++
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Query: 68 ASNNCITSLPEDLADCSKMSKL 89
S N + SLPE + D K+++L
Sbjct: 164 LSYNQLQSLPEGVFD--KLTQL 183
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 220 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 279
++T L L+LTGN L+ SL NG L L EN+ D +T T L
Sbjct: 83 ELTNLTYLILTGNQLQ----SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 280 SVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRN 337
++ + L ++P +++ +T+LDLS N +Q LP + L+ L L +N
Sbjct: 139 NLAHNQ-------LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 338 KIKDWPDAI 346
++K PD +
Sbjct: 192 QLKSVPDGV 200
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELPSSL 57
VFD+L L LD+S+N + +P+ + T L NQLK +P +
Sbjct: 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 80 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDL 138
L + + ++ L + GN+L L N + T L EL+ +N L +P+ + L+ L L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 139 HQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 190
+ N++ S+P + +L + NN L +LP KL++L L L+ NQLK
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 284 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 342
+ L+L G L I S + E +T L L+ N +Q LP + +L+ L+L N+++
Sbjct: 66 RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 343 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 401
PD + +N L+ +P F + L LDL N + SLPE F L L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG-VFDKLTQL 183
Query: 402 QELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 455
++L L + N L+S+P+G F LTSLT + L +N
Sbjct: 184 KQLSL-----------------------NDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 370 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXX 428
K++ L L L+ N + SLP N F L +L+EL L QL+ P
Sbjct: 80 ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 429 X-SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRR 486
N LQS+P+G F LT+LT LDL +N + + + L L+ N L+S+
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 487 TILDRGT 493
+ DR T
Sbjct: 199 GVFDRLT 205
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELPSSL-GRCLNLSDFK 67
VFD+L LK L + N + +PD + T L NQL+ LP + + NL+
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLD 163
Query: 68 ASNNCITSLPEDLAD-CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET 126
NN + SLPE + D +++ +L + N+L + + + T LT + N +
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSD 223
Query: 127 IGSLSRLI 134
I LSR I
Sbjct: 224 ILYLSRWI 231
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 13/152 (8%)
Query: 220 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 279
++T L L+LTGN L+ SL NG L L EN+ D +T T L
Sbjct: 83 ELTNLTYLILTGNQLQ----SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 280 SVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRN 337
+ + L ++P +++ +T+LDL N +Q LP + L+ L L+ N
Sbjct: 139 YLYHNQ-------LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
Query: 338 KIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSD 369
++K PD + NNP SD
Sbjct: 192 QLKSVPDGVFDRLTSLTHIWLLNNPWDCACSD 223
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 29 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 88
+ P E +V+ CS+ LK LP + R ++++ N T +P++L++ ++
Sbjct: 3 RCPTECTCLDTVVR--CSNKGLKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTL 58
Query: 89 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 147
+D+ N+++ LSN ++ T L LI S N L + P T L L L LH N I +P
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 148 -SSISGCCSLAEFYMGNNAL 166
+ + +L+ +G N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 285 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWP 343
EL L+G + +P E+ +T +DLS N I L + S+ L TLILS N+++ P
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 344 DAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 385
N + VP F D+ L L + N
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 305 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLR 364
++T+L L N +P ELS+ L + LS N+I + N LR
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 365 QVPSDGFKDIPMLQILDLSYN-IASLPENP--PFSSLPHL 401
+P F + L++L L N I+ +PE S+L HL
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 7/135 (5%)
Query: 324 SSCASLQTLILSRNK-IKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDL 382
+ C L T++ NK +K P I D N VP + + L ++DL
Sbjct: 6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYL---DGNQFTLVPKE-LSNYKHLTLIDL 61
Query: 383 SYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTXXXXXXXXXXXXXSQNSLQSIPEG- 440
S N S N FS++ L L L +LR P N + +PEG
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121
Query: 441 FKNLTSLTELDLSDN 455
F +L++L+ L + N
Sbjct: 122 FNDLSALSHLAIGAN 136
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 64 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 123
++ + ++ +TS+P + S ++L++E NKL L + + T LT+L S+N + +
Sbjct: 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67
Query: 124 PETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLG 180
P+ + L++L L LH+N++ S+P+ + L E + N L ++P +L+ L
Sbjct: 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 181 TLDLHSNQLKEYC 193
+ LH+N C
Sbjct: 128 KIWLHTNPWDCSC 140
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 263 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 321
+E + L ++ T + ++ L LE L ++P +++ ++TKL LS+N IQ LP
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 322 EL-SSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQIL 380
+ L L L NK++ P+ + D N L+ VP F + LQ +
Sbjct: 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Query: 381 DLSYN 385
L N
Sbjct: 130 WLHTN 134
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 277 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILS 335
+R S + E+ L+++P+ I T+L+L N +Q LP + L L LS
Sbjct: 3 SRCSCSGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60
Query: 336 RNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 394
+N+I+ PD + N L+ +P+ F + L+ L L N + S+P+
Sbjct: 61 QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG-I 119
Query: 395 FSSLPHLQELYLR 407
F L LQ+++L
Sbjct: 120 FDRLTSLQKIWLH 132
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 430 SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTI 488
SQN +QS+P+G F LT LT L L +N + + + L LD N L+S+ I
Sbjct: 60 SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119
Query: 489 LDRGT 493
DR T
Sbjct: 120 FDRLT 124
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELPSSL-GRCLNLSDFK 67
VFD+L L L +S N I +PD + T L N+L+ LP+ + + L +
Sbjct: 47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106
Query: 68 ASNNCITSLPEDLAD 82
N + S+P+ + D
Sbjct: 107 LDTNQLKSVPDGIFD 121
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 74 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSR 132
TS+P + ++ + LD+E N L L N + T LT+L N L +P + L+
Sbjct: 20 TSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 133 LIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 190
L L+L N++ S+P+ + L E + N L +LP KL++L L L+ NQLK
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 29/182 (15%)
Query: 277 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILS 335
+R S + + +++P+ I + T LDL NS++ LP + SL L L
Sbjct: 3 SRCSCSGTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG 60
Query: 336 RNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 394
NK++ P+ + N L+ +P+ F + L+ L L+ N + SLP+
Sbjct: 61 GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG-V 119
Query: 395 FSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLS 453
F L L++L L QN L+S+P+G F LTSL + L
Sbjct: 120 FDKLTQLKDLRLY-----------------------QNQLKSVPDGVFDRLTSLQYIWLH 156
Query: 454 DN 455
DN
Sbjct: 157 DN 158
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 380 LDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXX-SQNSLQSI 437
LDL N + SLP N F L L +LYL +L+ P S N LQS+
Sbjct: 33 LDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 438 PEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTKAV 496
P G F LT L EL L+ N + + + LRL N L+S+ + DR T
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 497 LKYLKD 502
+L D
Sbjct: 152 YIWLHD 157
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 30 IPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLAD-CSKMS 87
+P I + T + D +N LK LP+ + L +L+ N + SLP + + + ++
Sbjct: 22 VPTGIPAQTTYL--DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 88 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 146
L++ N+L L N + T L EL + N L +P+ + L++L L L+QN++ S+
Sbjct: 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
Query: 147 PSSI 150
P +
Sbjct: 140 PDGV 143
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELPSSL-GRCLNLSDFK 67
VFD L L L + N + +P+ + T+L + S+NQL+ LP+ + + L +
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 68 ASNNCITSLPEDLADCSKMSKL 89
+ N + SLP+ + D K+++L
Sbjct: 107 LNTNQLQSLPDGVFD--KLTQL 126
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELPSSL 57
VFD+L LK L ++ N + +PD + T L NQLK +P +
Sbjct: 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKA 68
F L L+ L +S N +++IP + S+ LV+ N+++++P + L N++ +
Sbjct: 97 AFSPLRKLQKLYISKNHLVEIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154
Query: 69 SNNCI--TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-E 125
N + + D K++ L + KLT + +L + L EL N + + E
Sbjct: 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELE 211
Query: 126 TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL 184
+ S+L RL L N+I I S+S +L E ++ NN LS +PA L L L + L
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 271
Query: 185 HSNQLKEYCV 194
H+N + + V
Sbjct: 272 HTNNITKVGV 281
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 25/124 (20%)
Query: 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXX 419
NN + ++ D FK + L L L N S FS L LQ+LY+ + L E P
Sbjct: 63 NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--- 119
Query: 420 XXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGN 479
++P +SL EL + DN I + + GN
Sbjct: 120 ----------------NLP------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157
Query: 480 PLRS 483
PL +
Sbjct: 158 PLEN 161
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 305 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPL 363
++ KL +S+N + E+PP L S SL L + N+I+ P + NPL
Sbjct: 103 KLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 19/182 (10%)
Query: 17 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL 76
L+ L VS N + +P + L K +NQL LP L + S+N + SL
Sbjct: 143 LQELSVSDNQLASLP---ALPSELCKLWAYNNQLTSLPMLPS---GLQELSVSDNQLASL 196
Query: 77 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL 136
P S++ KL N+LT +L A + L ELI S N L +P L L+
Sbjct: 197 P---TLPSELYKLWAYNNRLT----SLPALPSGLKELIVSGNRLTSLPVLPSELKELM-- 247
Query: 137 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA 196
+ NR+ S+P SG SL+ + N L+ LP L LS T++L N L E ++A
Sbjct: 248 -VSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 303
Query: 197 CQ 198
+
Sbjct: 304 LR 305
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 27/177 (15%)
Query: 17 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL--------------N 62
L++L+VS N + +P L F L LPS L +
Sbjct: 83 LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG 142
Query: 63 LSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG 122
L + S+N + SLP A S++ KL N+LT L ++ S L EL S N L
Sbjct: 143 LQELSVSDNQLASLP---ALPSELCKLWAYNNQLTSLP--MLPS--GLQELSVSDNQLAS 195
Query: 123 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL 179
+P S L +L + NR+ S+P+ SG L E + N L++LP +L +L
Sbjct: 196 LPTLP---SELYKLWAYNNRLTSLPALPSG---LKELIVSGNRLTSLPVLPSELKEL 246
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 294 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXX 353
+A PS+ +G T +D +P + + A Q L L N+I +
Sbjct: 11 AACPSQCSCSG--TTVDCRSKRHASVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINL 66
Query: 354 XXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE 413
+N L +P F + L +LDL N ++ + F L HL+EL++ +L E
Sbjct: 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 414 APTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 455
P QN L+SIP G F L+SLT L N
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 48 NQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIA 105
NQ+ +L P +NL + +N + +LP + D ++++ LD+ N+LTVL + +
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 106 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 147
L EL N L +P I L+ L L L QN++ SIP
Sbjct: 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 136 LDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQL 189
L LH N+I + P +L E Y+G+N L ALP + L++L LDL +NQL
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELPSSL-GRCLNLSDFK 67
VFD L LK L + N + +P + S T L D +NQL LPS++ R ++L +
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 68 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 112
N +T LP + + ++ L ++ N+L + + + LT
Sbjct: 119 MCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 147/334 (44%), Gaps = 54/334 (16%)
Query: 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 70
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+ N
Sbjct: 59 VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFN 116
Query: 71 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 130
N IT + + L + + +++L++ N ++ +S ++ T L +L S N + + + + +L
Sbjct: 117 NQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLANL 172
Query: 131 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 190
+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQLK
Sbjct: 173 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLK 230
Query: 191 EYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 250
+ A +T L L L N + L P L
Sbjct: 231 DIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGLT 261
Query: 251 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEIT 307
K +L N+ S S +A ++T+ EL+ LE + S I +T
Sbjct: 262 KLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNLT 308
Query: 308 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 341
L L N+I ++ P +SS LQ L S NK+ D
Sbjct: 309 YLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 341
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 270 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 327
+ L + T L T E+ LE + IP + ++ ++DLS N I EL P+
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 328 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 387
SL +L+L NKI + P ++ + N + + D F+D+ L +L L N
Sbjct: 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
Query: 388 SLPENPPFSSLPHLQELYL 406
FS L +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 270 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 327
+ L + T L T E+ LE + IP + ++ ++DLS N I EL P+
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 328 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 387
SL +L+L NKI + P ++ + N + + D F+D+ L +L L N
Sbjct: 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Query: 388 SLPENPPFSSLPHLQELYL 406
FS L +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 302 EAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDN 360
EA + DLS++ I L S L+ L L++N+I D
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 361 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 415
N L + S F+++ L++LDLSYN + F LP+L+EL L QL+ P
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 430 SQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTI 488
SQN L SI F+NL L LDLS N+I A + L LD N L+S+ I
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390
Query: 489 LDRGT 493
DR T
Sbjct: 391 FDRLT 395
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 145/334 (43%), Gaps = 55/334 (16%)
Query: 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 70
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+ N
Sbjct: 59 VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFN 116
Query: 71 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 130
N IT + + L + + +++L++ N ++ +S ++ T L +L + + P + +L
Sbjct: 117 NQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LANL 171
Query: 131 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 190
+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQLK
Sbjct: 172 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLK 229
Query: 191 EYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 250
+ A +T L L L N + L P L
Sbjct: 230 DIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGLT 260
Query: 251 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEIT 307
K +L N+ S S +A ++T+ EL+ LE + S I +T
Sbjct: 261 KLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNLT 307
Query: 308 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 341
L L N+I ++ P +SS LQ L S NK+ D
Sbjct: 308 YLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 340
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 54/334 (16%)
Query: 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 70
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+ N
Sbjct: 59 VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFN 116
Query: 71 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 130
N IT + + L + + +++L++ N ++ +S ++ T L +L S N + + + + +L
Sbjct: 117 NQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL-KPLANL 172
Query: 131 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 190
+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQLK
Sbjct: 173 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLK 230
Query: 191 EYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 250
+ A +T L L L N + L P L
Sbjct: 231 DIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGLT 261
Query: 251 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEIT 307
K +L N+ S S +A ++T+ EL+ LE + S I +T
Sbjct: 262 KLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNLT 308
Query: 308 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 341
L L N+I ++ P +SS LQ L NK+ D
Sbjct: 309 YLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 54/334 (16%)
Query: 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 70
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+ N
Sbjct: 59 VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFN 116
Query: 71 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 130
N IT + + L + + +++L++ N ++ +S ++ T L +L S N + + + + +L
Sbjct: 117 NQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLANL 172
Query: 131 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 190
+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQLK
Sbjct: 173 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLK 230
Query: 191 EYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 250
+ A +T L L L N + L P L
Sbjct: 231 DIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGLT 261
Query: 251 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEIT 307
K +L N+ S S +A ++T+ EL+ LE + S I +T
Sbjct: 262 KLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNLT 308
Query: 308 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 341
L L N+I ++ P +SS LQ L NK+ D
Sbjct: 309 YLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 28/185 (15%)
Query: 309 LDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVP 367
L LSRN I+ + + A+L TL L N++ P+ NNP+ +P
Sbjct: 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152
Query: 368 SDGFKDIPMLQILDLS--YNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXX 425
S F IP L+ LDL ++ + E F L +L+ L L LRE P
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIPN--------- 202
Query: 426 XXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIR 485
L L ELDLS N++SA Q L + + ++ I
Sbjct: 203 ---------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247
Query: 486 RTILD 490
R D
Sbjct: 248 RNAFD 252
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 25/177 (14%)
Query: 13 RLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN--QLKELPSS---------LGRCL 61
+L+ L+ LD+S NSI S +V + S +LK L S + RC+
Sbjct: 149 KLNSLEVLDLSANSI--------SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 62 NLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 120
NL +SNN T +P L DCS + LD+ GNKL+ + I++ T L L S N
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 121 NGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SLAEFYM-GNNALSALPAELG 174
G P L L L L +N+ IP +SG C +L + GN+ A+P G
Sbjct: 260 VG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 56/235 (23%)
Query: 7 LLYVFDRLHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLS 64
L+YV L++L + FN + +IP + + T L S+N+L E+P +GR NL+
Sbjct: 462 LMYV----KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 65 DFKASNNCITS-LPEDLADCSKMSKLDVEGNKL--TVLSNNLIASWTMLTELIASKNLL- 120
K SNN + +P +L DC + LD+ N T+ + S + IA K +
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 121 ---NGMPE-----------------------------------------TIGSLSRLIRL 136
+GM + T + ++ L
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 137 DLHQNRILS-IPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQL 189
D+ N + IP I L +G+N +S +P E+G L L LDL SN+L
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 24/118 (20%)
Query: 10 VFDRLHMLKSLDVSFNSIMK-IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA 68
FD + LD+S+N + IP EIGS L + N +
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS----------------- 669
Query: 69 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPE 125
S+P+++ D ++ LD+ NKL +++ TMLTE+ S N L+G +PE
Sbjct: 670 -----GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 371 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTXXXXXXXXXXXXX 429
F + + LD+SYN+ S S+P+L L L + + P
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 430 SQNSLQS-IPEGFKNLTSLTELDLSDNNISA 459
S N L IP+ LT LTE+DLS+NN+S
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 84 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNR 142
M LD+ N L+ I S L L N ++G +P+ +G L L LDL N+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 143 ILS-IPSSISGCCSLAEFYMGNNALSALPAELGKL 176
+ IP ++S L E + NN LS E+G+
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 101/275 (36%), Gaps = 33/275 (12%)
Query: 260 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 318
N+ S+ T+ L + + ++ L+L N+ I ++ + + L L RNSI++
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 319 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 377
+ + ASL TL L N + P NNP+ +PS F +P L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 378 QILDLS----------------YNI-------ASLPENPPFSSLPHLQELYLRRMQLREA 414
LDL +N+ ++ + P + L L+EL + E
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233
Query: 415 PTXXXXXXXXXXXXXSQNSLQSIPE--GFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQ 472
NS S+ E F L SL EL+L+ NN+S+
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293
Query: 473 ALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 507
L L NP D + +L++ IP N
Sbjct: 294 ELHLHHNPWNC------DCDILWLAWWLREYIPTN 322
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 82/177 (46%), Gaps = 25/177 (14%)
Query: 13 RLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN--QLKELPSS---------LGRCL 61
+L+ L+ LD+S NSI S +V + S +LK L S + RC+
Sbjct: 146 KLNSLEVLDLSANSI--------SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 197
Query: 62 NLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 120
NL +SNN T +P L DCS + LD+ GNKL+ + I++ T L L S N
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 121 NGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SLAEFYM-GNNALSALPAELG 174
G P L L L L +N+ IP +SG C +L + GN+ A+P G
Sbjct: 257 VG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 56/235 (23%)
Query: 7 LLYVFDRLHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLS 64
L+YV L++L + FN + +IP + + T L S+N+L E+P +GR NL+
Sbjct: 459 LMYV----KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 65 DFKASNNCITS-LPEDLADCSKMSKLDVEGNKL--TVLSNNLIASWTMLTELIASKNLL- 120
K SNN + +P +L DC + LD+ N T+ + S + IA K +
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574
Query: 121 ---NGMPE-----------------------------------------TIGSLSRLIRL 136
+GM + T + ++ L
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 137 DLHQNRILS-IPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQL 189
D+ N + IP I L +G+N +S +P E+G L L LDL SN+L
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 24/118 (20%)
Query: 10 VFDRLHMLKSLDVSFNSIMK-IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA 68
FD + LD+S+N + IP EIGS L LNL
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF------------------ILNL----G 661
Query: 69 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPE 125
N+ S+P+++ D ++ LD+ NKL +++ TMLTE+ S N L+G +PE
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 371 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTXXXXXXXXXXXXX 429
F + + LD+SYN+ S S+P+L L L + + P
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 430 SQNSLQS-IPEGFKNLTSLTELDLSDNNISA 459
S N L IP+ LT LTE+DLS+NN+S
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 84 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNR 142
M LD+ N L+ I S L L N ++G +P+ +G L L LDL N+
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 143 ILS-IPSSISGCCSLAEFYMGNNALSALPAELGKL 176
+ IP ++S L E + NN LS E+G+
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 723
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 145/334 (43%), Gaps = 55/334 (16%)
Query: 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 70
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+ N
Sbjct: 63 VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFN 120
Query: 71 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 130
N IT + + L + + +++L++ N ++ +S ++ T L +L + + P + +L
Sbjct: 121 NQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LANL 175
Query: 131 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 190
+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQLK
Sbjct: 176 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLK 233
Query: 191 EYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 250
+ A +T L L L N + L P L
Sbjct: 234 DIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGLT 264
Query: 251 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEIT 307
K +L N+ S S +A ++T+ EL+ LE + S I +T
Sbjct: 265 KLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNLT 311
Query: 308 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 341
L L N+I ++ P +SS LQ L + NK+ D
Sbjct: 312 YLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD 344
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 33 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91
E+ + ++ +C QL LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 150
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 151 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 191
G L E Y+ N L L P L KL L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 8 LYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN-LSDF 66
L V L +L +LD+S N + +P + AL D S N+L LP R L L +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
N + +LP L K+ KL + N+LT L L+ L L+ +N L +P+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 126 TIGSLSRLIRLDLHQN 141
L LH N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 430 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 484
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 33 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91
E+ + ++ +C QL LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 150
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 151 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 191
G L E Y+ N L L P L KL L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 8 LYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN-LSDF 66
L V L +L +LD+S N + +P + AL D S N+L LP R L L +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
N + +LP L K+ KL + N+LT L L+ L L+ +N L +P+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 126 TIGSLSRLIRLDLHQN 141
L LH N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 430 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 484
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 33 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91
E+ + ++ +C QL LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 150
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 151 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 191
G L E Y+ N L L P L KL L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 8 LYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN-LSDF 66
L V L +L +LD+S N + +P + AL D S N+L LP R L L +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
N + +LP L K+ KL + N+LT L L+ L L+ +N L +P+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 126 TIGSLSRLIRLDLHQN 141
L LH N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 430 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 484
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 144/334 (43%), Gaps = 55/334 (16%)
Query: 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 70
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+ N
Sbjct: 64 VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFN 121
Query: 71 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 130
N IT + + L + + +++L++ N ++ +S ++ T L +L + + P + +L
Sbjct: 122 NQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LANL 176
Query: 131 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 190
+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQLK
Sbjct: 177 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLK 234
Query: 191 EYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 250
+ A +T L L L N + L P L
Sbjct: 235 DIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGLT 265
Query: 251 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEIT 307
K +L N+ S S +A ++T+ EL+ LE + S I +T
Sbjct: 266 KLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNLT 312
Query: 308 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 341
L L N+I ++ P +SS LQ L NK+ D
Sbjct: 313 YLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 345
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 33 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91
E+ + ++ +C QL LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 150
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 151 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 191
G L E Y+ N L L P L KL L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 8 LYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN-LSDF 66
L V L +L +LD+S N + +P + AL D S N+L LP R L L +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
N + +LP L K+ KL + N+LT L L+ L L+ +N L +P+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 126 TIGSLSRLIRLDLHQN 141
L LH N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 430 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 484
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 144/334 (43%), Gaps = 55/334 (16%)
Query: 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 70
+ L+ L ++ S N + I + + T LV ++NQ+ ++ + L NL+ N
Sbjct: 59 VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFN 116
Query: 71 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 130
N IT + + L + + +++L++ N ++ +S ++ T L +L + + P + +L
Sbjct: 117 NQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LANL 171
Query: 131 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 190
+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+ NQLK
Sbjct: 172 TTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLK 229
Query: 191 EYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 250
+ A +T L L L N + L P L
Sbjct: 230 DIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGLT 260
Query: 251 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEIT 307
K +L N+ S S +A ++T+ EL+ LE + S I +T
Sbjct: 261 KLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNLT 307
Query: 308 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 341
L L N+I ++ P +SS LQ L NK+ D
Sbjct: 308 YLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 340
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 70/173 (40%), Gaps = 30/173 (17%)
Query: 291 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 349
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 17 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 350 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 408
NP++ + F + LQ ++ + N+ASL EN P L L+EL
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 409 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 459
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 130 -------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 222 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM-----A 276
T+L+ L L+ N + T+ S+ + L + S L + + + +LI +
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 277 TRLS---VTSKELSLEGMNLSA-------IPSEIWEAGEITKLDLSRNSIQEL-PPELSS 325
TR++ + + SLE + ++ +P E +T LDLS+ +++L P +S
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 326 CASLQTLILSRNKIKDWPDAI 346
+SLQ L ++ N++K PD I
Sbjct: 493 LSSLQVLNMASNQLKSVPDGI 513
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 25/175 (14%)
Query: 17 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL 76
LK LD+SFN ++ + L D + LK++ S F + N I
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIY-- 425
Query: 77 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL--NGMPETIGSLSRLI 134
LD+ V N + + L L + N N +P+ L L
Sbjct: 426 ------------LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473
Query: 135 RLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSN 187
LDL Q ++ + P++ + SL M +N L ++P +L+ L + LH+N
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 18 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 75
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 76 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 132
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 133 LIRLDLHQNRILSI 146
L LDL N+I SI
Sbjct: 151 LEHLDLSSNKIQSI 164
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 4/130 (3%)
Query: 368 SDGFKDIPMLQILDLSY-NIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXX 426
S F + L+ LD + N+ + E F SL +L L + R A
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 427 X-XXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRS 483
+ NS Q +P+ F L +LT LDLS + Q L + N L+S
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 484 IRRTILDRGT 493
+ I DR T
Sbjct: 509 VPDGIFDRLT 518
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 28/155 (18%)
Query: 309 LDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVP 367
LDLS N ++ L S LQ L LSR +I+ D NP++ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 368 SDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXX 426
F + LQ ++ + N+ASL EN P L L+EL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---------------------- 129
Query: 427 XXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 459
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 130 -NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 18 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 75
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 76 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 132
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 133 LIRLDLHQNRILSI 146
L LDL N+I SI
Sbjct: 151 LEHLDLSSNKIQSI 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 70/173 (40%), Gaps = 30/173 (17%)
Query: 291 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 349
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 41 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98
Query: 350 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 408
NP++ + F + LQ ++ + N+ASL EN P L L+EL
Sbjct: 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 153
Query: 409 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 459
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 154 -------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 18 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 75
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 76 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 132
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 174
Query: 133 LIRLDLHQNRILSI 146
L LDL N+I SI
Sbjct: 175 LEHLDLSSNKIQSI 188
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 70/190 (36%), Gaps = 51/190 (26%)
Query: 294 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 352
S P+ G + L L R +QEL P L A+LQ L L
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 136
Query: 353 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 411
+N L+ +P D F+D+ L L L N I+S+PE F L L L L
Sbjct: 137 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 184
Query: 412 REAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXX 470
QN + + P F++L L L L NN+SA
Sbjct: 185 -------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Query: 471 XQALRLDGNP 480
Q LRL+ NP
Sbjct: 226 LQYLRLNDNP 235
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 77 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIR 135
P ++ L ++ L L L L L N L +P+ T L L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 136 LDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 193
L LH NRI S+P + G SL + N ++ + P L +L TL L +N L
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 194 VEA 196
EA
Sbjct: 217 TEA 219
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 23/159 (14%)
Query: 327 ASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNI 386
A+ Q + L N+I P A +N L ++ + F + +L+ LDLS N
Sbjct: 31 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 90
Query: 387 ASLPENPP-FSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEGFKNLT 445
+P F L L L+L R L+E P F+ L
Sbjct: 91 QLRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------PGLFRGLA 128
Query: 446 SLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 484
+L L L DN + A L L GN + S+
Sbjct: 129 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 167
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 86/229 (37%), Gaps = 39/229 (17%)
Query: 120 LNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLS 177
L +P I + S+ R+ LH NRI +P +S C +L ++ +N L+ + A L+
Sbjct: 22 LQAVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 79
Query: 178 KLGTLDLHSN-QLKEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRT 236
L LDL N QL+ P + L L L L+
Sbjct: 80 LLEQLDLSDNAQLRS---------------------VDPATFHGLGRLHTLHLDRCGLQE 118
Query: 237 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI 296
L L G A L+YL +D+ +D L+ L L G +S++
Sbjct: 119 LGPGLFRG--LAALQYLYL-----QDNALQALPDDTFRDLGNLT----HLFLHGNRISSV 167
Query: 297 PSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWP 343
P + + +L L +N + + P L TL L N + P
Sbjct: 168 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 72/175 (41%), Gaps = 30/175 (17%)
Query: 289 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIX 347
E +N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 16 EELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 73
Query: 348 XXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYL 406
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 74 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV 132
Query: 407 RRMQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 459
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 133 -----------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 18 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 75
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 76 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 132
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 133 LIRLDLHQNRILSI 146
L LDL N+I SI
Sbjct: 152 LEHLDLSSNKIQSI 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 291 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 349
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 19 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 350 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 408
NP++ + F + LQ ++ L N+ASL EN P L L+EL +
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 409 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 459
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 134 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 18 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 75
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 76 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 132
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 93 LALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 133 LIRLDLHQNRILSI 146
L LDL N+I SI
Sbjct: 153 LEHLDLSSNKIQSI 166
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 70/190 (36%), Gaps = 51/190 (26%)
Query: 294 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 352
S P+ G + L L R +QEL P L A+LQ L L
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 137
Query: 353 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 411
+N L+ +P D F+D+ L L L N I+S+PE F L L L L
Sbjct: 138 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 185
Query: 412 REAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXX 470
QN + + P F++L L L L NN+SA
Sbjct: 186 -------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 471 XQALRLDGNP 480
Q LRL+ NP
Sbjct: 227 LQYLRLNDNP 236
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 77 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIR 135
P ++ L ++ L L L L L N L +P+ T L L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 136 LDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 193
L LH NRI S+P + G SL + N ++ + P L +L TL L +N L
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 194 VEA 196
EA
Sbjct: 218 TEA 220
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 23/159 (14%)
Query: 327 ASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNI 386
A+ Q + L N+I P A +N L ++ + F + +L+ LDLS N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 387 ASLPENPP-FSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEGFKNLT 445
+P F L L L+L R L+E P F+ L
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------PGLFRGLA 129
Query: 446 SLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 484
+L L L DN + A L L GN + S+
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 21 DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED 79
D S + ++PD++ T + + + NQL+ LP++ R L+ N I+ L +
Sbjct: 10 DCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Query: 80 LADCSKMSKLDV---EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIR 135
L C K+ L V + N+L+ LS+ A T LTEL N + + LI
Sbjct: 68 L--CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 136 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE---LGKLSKLGTLDLHSNQLKE 191
LDL N + S + +L E + NN + AL +E + S L L+L SNQ+KE
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185
Query: 192 Y---CVEA 196
+ C A
Sbjct: 186 FSPGCFHA 193
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLKELP-SSLGRCLNLSDFKA 68
F R L SLDV FN+I K+ E+ ++K + N+L +L + C NL++
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Query: 69 SNNCITSLPED-LADCSKMSKLDVEGNKLT 97
+N I + + + LD+ N L+
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTXX 418
+N LR++P+ F L LD+ +N S E LP L+ L L+ +L + +
Sbjct: 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93
Query: 419 XXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLD 477
NS+Q I F +L LDLS N +S+ Q L L
Sbjct: 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153
Query: 478 GNPLRSIRRTILDRGTKAVLKYLK 501
N +++++ LD + LK L+
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLE 177
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 270 EDLITMATRLSVTSKELS-LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCA 327
+DL T T L++T +L L N + ++T LD+ N+I +L PEL
Sbjct: 21 DDLPTNITVLNLTHNQLRRLPAANFT-------RYSQLTSLDVGFNTISKLEPELCQKLP 73
Query: 328 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 385
L+ L L N++ D +N ++++ ++ F L LDLS+N
Sbjct: 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 21 DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED 79
D S + ++PD++ T + + + NQL+ LP++ R L+ N I+ L +
Sbjct: 15 DCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Query: 80 LADCSKMSKLDV---EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIR 135
L C K+ L V + N+L+ LS+ A T LTEL N + + LI
Sbjct: 73 L--CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 136 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE---LGKLSKLGTLDLHSNQLKE 191
LDL N + S + +L E + NN + AL +E + S L L+L SNQ+KE
Sbjct: 131 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 190
Query: 192 Y---CVEA 196
+ C A
Sbjct: 191 FSPGCFHA 198
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLKELP-SSLGRCLNLSDFKA 68
F R L SLDV FN+I K+ E+ ++K + N+L +L + C NL++
Sbjct: 50 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 109
Query: 69 SNNCITSLPED-LADCSKMSKLDVEGNKLT 97
+N I + + + LD+ N L+
Sbjct: 110 MSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTXX 418
+N LR++P+ F L LD+ +N S E LP L+ L L+ +L + +
Sbjct: 39 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 98
Query: 419 XXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLD 477
NS+Q I F +L LDLS N +S+ Q L L
Sbjct: 99 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 158
Query: 478 GNPLRSIRRTILDRGTKAVLKYLK 501
N +++++ LD + LK L+
Sbjct: 159 NNKIQALKSEELDIFANSSLKKLE 182
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 270 EDLITMATRLSVTSKELS-LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCA 327
+DL T T L++T +L L N + ++T LD+ N+I +L PEL
Sbjct: 26 DDLPTNITVLNLTHNQLRRLPAANFT-------RYSQLTSLDVGFNTISKLEPELCQKLP 78
Query: 328 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 385
L+ L L N++ D +N ++++ ++ F L LDLS+N
Sbjct: 79 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 21 DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED 79
D S + ++PD++ T + + + NQL+ LP++ R L+ N I+ L +
Sbjct: 20 DCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
Query: 80 LADCSKMSKLDV---EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIR 135
L C K+ L V + N+L+ LS+ A T LTEL N + + LI
Sbjct: 78 L--CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 135
Query: 136 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE---LGKLSKLGTLDLHSNQLKE 191
LDL N + S + +L E + NN + AL +E + S L L+L SNQ+KE
Sbjct: 136 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 195
Query: 192 Y---CVEA 196
+ C A
Sbjct: 196 FSPGCFHA 203
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLKELP-SSLGRCLNLSDFKA 68
F R L SLDV FN+I K+ E+ ++K + N+L +L + C NL++
Sbjct: 55 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 114
Query: 69 SNNCITSLPED-LADCSKMSKLDVEGNKLT 97
+N I + + + LD+ N L+
Sbjct: 115 MSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTXX 418
+N LR++P+ F L LD+ +N S E LP L+ L L+ +L + +
Sbjct: 44 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 103
Query: 419 XXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLD 477
NS+Q I F +L LDLS N +S+ Q L L
Sbjct: 104 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 163
Query: 478 GNPLRSIRRTILDRGTKAVLKYLK 501
N +++++ LD + LK L+
Sbjct: 164 NNKIQALKSEELDIFANSSLKKLE 187
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 270 EDLITMATRLSVTSKELS-LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCA 327
+DL T T L++T +L L N + ++T LD+ N+I +L PEL
Sbjct: 31 DDLPTNITVLNLTHNQLRRLPAANFT-------RYSQLTSLDVGFNTISKLEPELCQKLP 83
Query: 328 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 385
L+ L L N++ D +N ++++ ++ F L LDLS+N
Sbjct: 84 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 291 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 349
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 18 LNFYKIPDNL--PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 75
Query: 350 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 408
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 132
Query: 409 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 459
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 133 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 18 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 75
K+LD+S+N + + S L D S +++ + + L +LS + N I S
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 76 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 132
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 133 LIRLDLHQNRILSI 146
L LDL N+I SI
Sbjct: 152 LEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 291 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 349
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 19 LNFYKIPDNL--PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 350 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 408
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 409 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 459
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 134 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 18 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 75
K+LD+S+N + + S L D S +++ + + L +LS + N I S
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 76 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 132
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 133 LIRLDLHQNRILSI 146
L LDL N+I SI
Sbjct: 153 LEHLDLSSNKIQSI 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 291 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 349
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 17 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 350 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 408
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 131
Query: 409 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 459
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 132 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 18 KSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 75
K+LD+SFN + + S L D S +++ + + L +LS + N I S
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 76 LP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSR 132
L + S + KL L L N I L EL + NL+ +PE +L+
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 133 LIRLDLHQNRILSI 146
L LDL N+I SI
Sbjct: 151 LEHLDLSSNKIQSI 164
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 84 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLI-----RLDL 138
S + LDV N L + + +W E I NL + M GS+ R + LDL
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWA---ESILVLNLSSNM--LTGSVFRCLPPKVKVLDL 457
Query: 139 HQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYC 193
H NRI+SIP ++ +L E + +N L ++P +L+ L + LH N C
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 57
+K LD+ N IM IP ++ AL + + +SNQLK +P +
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV 492
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 292 NLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXX 350
NL+ +P ++ L LS+NSI EL P++S + L+ L LS N+I+ +
Sbjct: 42 NLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99
Query: 351 XXXXXXXXDNNPLRQVPSDGFKDIPM--LQILDLSYN-IASLPENPPFSSLPHLQELYLR 407
+N L+ + PM L+ LDLS+N LP F +L L L L
Sbjct: 100 QDLEYLDVSHNRLQNISC-----CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Query: 408 RMQLRE 413
+ R+
Sbjct: 155 AAKFRQ 160
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 17 LKSLDVSFNSI--MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNC 72
L++LDVS NS+ A +++ + SSN L S+ RCL + NN
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLPPKVKVLDLHNNR 461
Query: 73 ITSLPEDLADCSKMSKLDVEGNKL 96
I S+P+D+ + +L+V N+L
Sbjct: 462 IMSIPKDVTHLQALQELNVASNQL 485
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 305 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNP 362
++ LDL N I +P +++ +LQ L ++ N++K PD + +NP
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 90/244 (36%), Gaps = 53/244 (21%)
Query: 266 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSE----------IW---------EAGEI 306
S ++ L + T + +S+ + L G +S +P+ +W +A
Sbjct: 16 SCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAF 75
Query: 307 T------KLDLSRNSIQEL--PPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXX 358
T +LDLS N+ + P L TL L R +++ +
Sbjct: 76 TGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYL 135
Query: 359 DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTX 417
+N L+ +P + F+D+ L L L N I S+PE+ F L L L L
Sbjct: 136 QDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHA-FRGLHSLDRLLLH---------- 184
Query: 418 XXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRL 476
QN + + P F++L L L L NN+S Q LRL
Sbjct: 185 -------------QNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRL 231
Query: 477 DGNP 480
+ NP
Sbjct: 232 NDNP 235
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 64/173 (36%), Gaps = 25/173 (14%)
Query: 313 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 372
+ +Q +P + AS Q + L N+I P A +N L + + F
Sbjct: 19 QQGLQAVPTGIP--ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFT 76
Query: 373 DIPMLQILDLSYNIASLPENPP-FSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQ 431
+ +L+ LDLS N +P F L HL L+L R L+E
Sbjct: 77 GLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELG---------------- 120
Query: 432 NSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 484
P F+ L +L L L DNN+ A L L GN + S+
Sbjct: 121 ------PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSV 167
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 3/116 (2%)
Query: 77 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIR 135
P + L ++ L L L L L N L +P+ T L L
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 136 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQL 189
L LH NRI S+P + G SL + N ++ + P L +L TL L +N L
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 29/249 (11%)
Query: 260 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 318
N+ S T+ +L + + V ++ L+L+ ++ I ++ ++ + L LS+N +++
Sbjct: 14 NQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK 73
Query: 319 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 377
+ + SL TL L N++ P NNP+ +PS F +P L
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 378 QILDL-----------------------SYNIASLPENPPFSSLPHLQELYL--RRMQLR 412
+ LDL + + +L + P ++L L+EL L R+ L
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI 193
Query: 413 EAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNLTSLTELDLSDNNISAXXXXXXXXXXXX 471
P + +I F +L SL EL+LS NN+ +
Sbjct: 194 R-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 472 QALRLDGNP 480
+ + L+ NP
Sbjct: 253 ERVHLNHNP 261
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 321 PELSSCASLQT-LILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQI 379
P SC++ + +I +R ++ + P +I N ++ + +D FK + L+I
Sbjct: 7 PAACSCSNQASRVICTRRELAEVPASIPVNTRYLNL---QENSIQVIRTDTFKHLRHLEI 63
Query: 380 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNS-LQSIP 438
L LS N+ E F+ LP L L L +L PT +N+ ++SIP
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 439 E-GFKNLTSLTELDLSD 454
F + SL LDL +
Sbjct: 124 SYAFNRVPSLRRLDLGE 140
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 88 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 146
KLD++ L LS+ T LT L N L + + L+ L L L N++ S+
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 147 PSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 190
P + L + Y+G N L +LP+ + +L+KL L L++NQL+
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 432 NSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILD 490
N LQ++ G F +LT L L L++N +++ L L GN L+S+ + D
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 491 RGTK 494
R TK
Sbjct: 129 RLTK 132
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPSSL-GRCLNLSDFK 67
VFD L L +L ++ N + +P T L K NQLK LPS + R L + +
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 68 ASNNCITSLPEDLAD 82
+ N + S+P D
Sbjct: 138 LNTNQLQSIPAGAFD 152
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPSS----LGRCLNLS 64
VFDRL LK L ++ N + IP T L S+NQL+ +P LG+ ++
Sbjct: 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185
Query: 65 DFKASNNC 72
F +C
Sbjct: 186 LFGNQFDC 193
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 88 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 146
KLD++ L LS+ T LT L N L + + L+ L L L N++ S+
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 147 PSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 190
P + L + Y+G N L +LP+ + +L+KL L L++NQL+
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 432 NSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILD 490
N LQ++ G F +LT L L L++N +++ L L GN L+S+ + D
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 491 RGTK 494
R TK
Sbjct: 129 RLTK 132
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPSSL-GRCLNLSDFK 67
VFD L L +L ++ N + +P T L K NQLK LPS + R L + +
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 68 ASNNCITSLPEDLAD 82
+ N + S+P D
Sbjct: 138 LNTNQLQSIPAGAFD 152
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPSS----LGRCLNLS 64
VFDRL LK L ++ N + IP T L S+NQL+ +P LG+ ++
Sbjct: 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185
Query: 65 DFKASNNC 72
F +C
Sbjct: 186 LFGNQFDC 193
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 21 DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED 79
D S + IPD++ S ++ + + NQL+ LP ++ R L+ A N I+ L +
Sbjct: 10 DCSHLKLTHIPDDLPSNITVL--NLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
Query: 80 LADCSKMSK-LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLD 137
L + K L+++ N+L+ +S+ T LTEL N ++ + + LI+LD
Sbjct: 68 LCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLD 127
Query: 138 LHQNRILS--IPSSISGCCSLAEFYMGNNALSALPAELGKL--SKLGTLDLHSNQLKEY 192
L N + S + + + N L+ EL L S L LDL SN LKE+
Sbjct: 128 LSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEF 186
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTXX 418
+N LR++P F L ILD +N S E LP L+ L L+ +L + +
Sbjct: 34 HNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTF 93
Query: 419 XXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 459
NS+ I FKN +L +LDLS N +S+
Sbjct: 94 VFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 270 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS- 328
+DL + T L++T +L P+ ++ LD NSI +L PEL
Sbjct: 21 DDLPSNITVLNLTHNQLR------RLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPL 74
Query: 329 LQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 385
L+ L L N++ D +N + ++ S+ FK+ L LDLS+N
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 20/77 (25%)
Query: 382 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEGF 441
LSYN F+ +P LQ L LRR+ L+ P F
Sbjct: 437 LSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS--------------------PSPF 476
Query: 442 KNLTSLTELDLSDNNIS 458
+ L +LT LDLS+NNI+
Sbjct: 477 RPLRNLTILDLSNNNIA 493
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 33 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 150
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 151 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 191
G L E Y+ N L L P L KL L L +N L E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 8 LYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN-LSDF 66
L V L +L +LD+S N + +P + AL D S N+L LP R L L +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
N + +LP L K+ KL + N LT L L+ L L+ +N L +P+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 126 TIGSLSRLIRLDLHQN 141
L LH N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 430 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 489
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 33 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 150
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 151 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 191
G L E Y+ N L L P L KL L L +N L E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 8 LYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN-LSDF 66
L V L +L +LD+S N + +P + AL D S N+L LP R L L +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
N + +LP L K+ KL + N LT L L+ L L+ +N L +P+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 126 TIGSLSRLIRLDLHQN 141
L LH N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 430 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 489
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 33 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 150
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 151 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 191
G L E Y+ N L L P L KL L L +N L E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 8 LYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN-LSDF 66
L V L +L +LD+S N + +P + AL D S N+L LP R L L +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
N + +LP L K+ KL + N LT L L+ L L+ +N L +P+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 126 TIGSLSRLIRLDLHQN 141
L LH N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 430 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 489
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 33 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 6 EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 63
Query: 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 150
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 64 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 121
Query: 151 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 191
G L E Y+ N L L P L KL L L +N L E
Sbjct: 122 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 163
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 8 LYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN-LSDF 66
L V L +L +LD+S N + +P + AL D S N+L LP R L L +
Sbjct: 71 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 130
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
N + +LP L K+ KL + N LT L L+ L L+ +N L +P+
Sbjct: 131 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 190
Query: 126 TIGSLSRLIRLDLHQN 141
L LH N
Sbjct: 191 GFFGSHLLPFAFLHGN 206
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 430 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 489
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 86 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 145
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 29/249 (11%)
Query: 260 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 318
N+ S T+ +L + + V ++ L+L+ ++ I ++ ++ + L LS+N +++
Sbjct: 14 NQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK 73
Query: 319 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 377
+ + SL TL L N++ P NNP+ +PS F +P L
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 378 QILDL-----------------------SYNIASLPENPPFSSLPHLQELYL--RRMQLR 412
+ LDL + + +L + P ++L L+EL L R+ L
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI 193
Query: 413 EAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNLTSLTELDLSDNNISAXXXXXXXXXXXX 471
P + +I F +L SL EL+LS NN+ +
Sbjct: 194 R-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 472 QALRLDGNP 480
+ + L+ NP
Sbjct: 253 ERVHLNHNP 261
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 321 PELSSCASLQT-LILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQI 379
P SC++ + +I +R ++ + P +I N ++ + +D FK + L+I
Sbjct: 7 PAACSCSNQASRVICTRRELAEVPASIPVNTRYLNL---QENSIQVIRTDTFKHLRHLEI 63
Query: 380 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNS-LQSIP 438
L LS N+ E F+ LP L L L +L PT +N+ ++SIP
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 439 E-GFKNLTSLTELDLSD 454
F + SL LDL +
Sbjct: 124 SYAFNRVPSLRRLDLGE 140
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 33 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRDLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 150
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 151 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 191
G L E Y+ N L L P L KL L L +N L E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTE 162
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 8 LYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN-LSDF 66
L V L +L +LD+S N + +P + AL D S N+L LP R L L +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
N + +LP L K+ KL + N LT L L+ L L+ +N L +P+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 126 TIGSLSRLIRLDLHQN 141
L LH N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 430 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 489
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 7/162 (4%)
Query: 33 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91
E+ + ++ +C L LP L + + + S N + + L +++++L++
Sbjct: 5 EVSKVASHLEVNCDKRDLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 150
+ +LT L + + +L L S N L +P +L L LD+ NR+ S+P ++
Sbjct: 63 DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 151 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 191
G L E Y+ N L L P L KL L L +N L E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 8 LYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLN-LSDF 66
L V L +L +LD+S N + +P + AL D S N+L LP R L L +
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
N + +LP L K+ KL + N LT L L+ L L+ +N L +P+
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Query: 126 TIGSLSRLIRLDLHQN 141
L LH N
Sbjct: 190 GFFGSHLLPFAFLHGN 205
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 430 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 489
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++ +L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 286 LSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSSCASLQT-LILSRNKIKDWP 343
L+L + + I + + A I KL + N+I+ LPP + L T L+L RN + P
Sbjct: 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133
Query: 344 DAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 385
I NN L ++ D F+ LQ L LS N
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 360 NNPLRQVPS---DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT 416
N+ +R++P+ D F+ + +L + DL I + + F+ +Q+LY+ +R P
Sbjct: 54 NSTMRKLPAALLDSFRQVELLNLNDLQ--IEEI-DTYAFAYAHTIQKLYMGFNAIRYLPP 110
Query: 417 XXXXXX-XXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQAL 474
+N L S+P G F N LT L +S+NN+ Q L
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170
Query: 475 RLDGNPLRSIRRTILDRGTKAVLKY 499
+L N L + +++ A + Y
Sbjct: 171 QLSSNRLTHVDLSLIPSLFHANVSY 195
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 81/221 (36%), Gaps = 40/221 (18%)
Query: 9 YVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLKELPSSLGRCL-NLSDF 66
Y F H ++ L + FN+I +P + L+ N L LP + L+
Sbjct: 87 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLI-------ASWTMLT------- 111
SNN + + +D + + L + N+LT + +LI S+ +L+
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 206
Query: 112 --ELIASKNLLN------GMPETIGSLSR--------------LIRLDLHQNRILSIPSS 149
EL AS N +N + TI L L+ +DL N + I
Sbjct: 207 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 266
Query: 150 -ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 189
L Y+ NN L AL + L LDL N L
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 16 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS 75
LK +DV NS+ K+PD S + +NQL+ELP L L+ A NN +
Sbjct: 154 FLKIIDVDNNSLKKLPDLPPSLEFIA---AGNNQLEELPE-LQNLPFLTAIYADNNSLKK 209
Query: 76 LPEDLADCSKMSKLDVEGNKLTVLSNNLI------ASWTMLTELIASKNLLNGMPETIGS 129
LP DL L +E V NN++ + LT + A NLL +P+ S
Sbjct: 210 LP-DLP-------LSLES---IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPS 258
Query: 130 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 189
L L D + + +P S++ + G LS LP L L+ SN++
Sbjct: 259 LEALNVRDNYLTDLPELPQSLTFLDVSENIFSG---LSELPP------NLYYLNASSNEI 309
Query: 190 KEYC 193
+ C
Sbjct: 310 RSLC 313
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 16/174 (9%)
Query: 17 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL 76
L+SL S NS+ ++P+ S +L+ + + L +LP L SNN + L
Sbjct: 93 LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY------LGVSNNQLEKL 146
Query: 77 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL 136
PE L + S + +DV+ N L L +L S + A N L +PE + +L L +
Sbjct: 147 PE-LQNSSFLKIIDVDNNSLKKLP-DLPPSLEFIA---AGNNQLEELPE-LQNLPFLTAI 200
Query: 137 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 190
N + +P SL GNN L LP EL L L T+ +N LK
Sbjct: 201 YADNNSLKKLP---DLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK 250
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 14 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCI 73
L L ++ NS+ K+PD S ++V +N L+ELP L L+ A NN +
Sbjct: 194 LPFLTAIYADNNSLKKLPDLPLSLESIV---AGNNILEELPE-LQNLPFLTTIYADNNLL 249
Query: 74 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL 133
+LP DL + L+V N LT L L S T L S+N+ +G+ E +L
Sbjct: 250 KTLP-DLP--PSLEALNVRDNYLTDLPE-LPQSLTFLD---VSENIFSGLSELPPNL--- 299
Query: 134 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL 179
L+ N I S+ SL E + NN L LPA +L +L
Sbjct: 300 YYLNASSNEIRSL---CDLPPSLEELNVSNNKLIELPALPPRLERL 342
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 286 LSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSSCASLQT-LILSRNKIKDWP 343
L+L + + I + + A I KL + N+I+ LPP + L T L+L RN + P
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139
Query: 344 DAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 385
I NN L ++ D F+ LQ L LS N
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 360 NNPLRQVPS---DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT 416
N+ +R++P+ D F+ + +L + DL I + + F+ +Q+LY+ +R P
Sbjct: 60 NSTMRKLPAALLDSFRQVELLNLNDLQ--IEEI-DTYAFAYAHTIQKLYMGFNAIRYLPP 116
Query: 417 XXXXXX-XXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQAL 474
+N L S+P G F N LT L +S+NN+ Q L
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176
Query: 475 RLDGNPLRSI 484
+L N L +
Sbjct: 177 QLSSNRLTHV 186
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 81/221 (36%), Gaps = 40/221 (18%)
Query: 9 YVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLKELPSSLGRCL-NLSDF 66
Y F H ++ L + FN+I +P + L+ N L LP + L+
Sbjct: 93 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152
Query: 67 KASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLI-------ASWTMLT------- 111
SNN + + +D + + L + N+LT + +LI S+ +L+
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 212
Query: 112 --ELIASKNLLN------GMPETIGSLSR--------------LIRLDLHQNRILSIPSS 149
EL AS N +N + TI L L+ +DL N + I
Sbjct: 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 272
Query: 150 -ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 189
L Y+ NN L AL + L LDL N L
Sbjct: 273 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 45 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC--SKMSKLDVEGNKLTVLSNN 102
CS QL +P SL L D S+N ++ L + + + L + N L +S+
Sbjct: 25 CSKQQLPNVPQSLPSYTALLDL--SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82
Query: 103 LIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIP-SSISGCCSLAEFY 160
L L S N L+ + E + S L L L L+ N I+ + ++ L + Y
Sbjct: 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142
Query: 161 MGNNALSALPAEL----GKLSKLGTLDLHSNQLKE 191
+ N +S P EL KL KL LDL SN+LK+
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 309 LDLSRNSIQELPPELS--SCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQV 366
LDLS N++ L E + +L +L+LS N + +N L +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 367 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT 416
F D+ L++L L N + + F + LQ+LYL + Q+ P
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 64/315 (20%)
Query: 160 YMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXXXXXXXXPPE 217
Y+G N L P E L K KLG L+ NQL+ P
Sbjct: 311 YIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKL----------------------PA 348
Query: 218 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--LKYLRSRL---PENEDSEASTTKEDL 272
G L L L N + + ++ G T + L + ++L P D+++
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFC-GFTEQVENLSFAHNKLKYIPNIFDAKS------- 400
Query: 273 ITMATRLSVTSKEL-SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS-LQ 330
+++ + + + E+ S++G N + ++ ++ ++LS N I + P EL S S L
Sbjct: 401 VSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 331 TLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASL 389
++ L N + + P N L+ ++ FK+ +L +DL +N + L
Sbjct: 461 SINLXGNXLTEIP----------------KNSLKD-ENENFKNTYLLTSIDLRFNKLTKL 503
Query: 390 PENPPFSSLPHLQELYLRRMQLREAPTX-------XXXXXXXXXXXXSQNSLQSIPEGFK 442
++ ++LP+L + L + PT +L+ PEG
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563
Query: 443 NLTSLTELDLSDNNI 457
SLT+L + N+I
Sbjct: 564 LCPSLTQLQIGSNDI 578
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 11 FDRLHMLKSLDVSFNSIMKIPDEIGSAT--ALVKFDCSSNQLKELPSSLGRCLNLSDFKA 68
F ++L S+D+ FN + K+ D+ + T LV D S N + P+ + LN S K
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT---QPLNSSTLKG 540
Query: 69 ----------SNNCITSLPEDLADCSKMSKLDVEGNKL 96
N + PE + C +++L + N +
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 51/226 (22%)
Query: 17 LKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLKELPS------------------SL 57
L SL++++N I +IP T V+ + N+LK +P+ +
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEI 414
Query: 58 G---------------RCLNLSDFKASNNCITSLPEDL-ADCSKMSKLDVEGNKLTVL-- 99
G + +N+S SNN I+ P++L + S +S +++ GN LT +
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPK 474
Query: 100 -----SNNLIASWTMLTELIASKNLLNGMPETI--GSLSRLIRLDLHQNRILSIPSSISG 152
N + +LT + N L + + +L L+ +DL N P+
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN 534
Query: 153 CCSLAEFYM-------GNNALSALPAELGKLSKLGTLDLHSNQLKE 191
+L F + GN L P + L L + SN +++
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 33/200 (16%)
Query: 284 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCA----SLQTLILSRNK 338
K +++E + +P + + LDLS N + E + S+C SLQTL+LS+N
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372
Query: 339 IKDWPDA--IXXXXXXXXXXXXDNNPLRQVP---------------SDGFKDIPM----- 376
++ I N +P S G + +
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT 432
Query: 377 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQS 436
L++LD+S N +L F LP LQELY+ R +L+ P S+N L+S
Sbjct: 433 LEVLDVSNN--NLDSFSLF--LPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKS 487
Query: 437 IPEG-FKNLTSLTELDLSDN 455
+P+G F LTSL ++ L N
Sbjct: 488 VPDGIFDRLTSLQKIWLHTN 507
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 439 EGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 489
+ F +L SL LDLSDN++S+ + L L GNP +++ T L
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 73 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLS 131
TS+P L + M LD+ NK+T + + + + L LI + +N + + SL
Sbjct: 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74
Query: 132 RLIRLDLHQNRILSIPSSISGCCSLAEF--YMGN 163
L LDL N + S+ SS G S ++ MGN
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 292 NLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXXX 350
+ ++IPS + A + LDLS N I + +L +CA+LQ LIL ++I
Sbjct: 16 SFTSIPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73
Query: 351 XXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 404
+N L + S F + L+ L+L N +L F +L +LQ L
Sbjct: 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 73 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSL- 130
++ + E + +LD+ N ++ SWT L L S N+L +TI
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT---DTIFRCL 419
Query: 131 -SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSN 187
R+ LDLH N+I SIP + +L E + +N L ++P +L+ L + LH+N
Sbjct: 420 PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 17 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 57
+K LD+ N I IP ++ AL + + +SNQLK +P +
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 306 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAI 346
I LDL N I+ +P ++ +LQ L ++ N++K PD I
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 14/166 (8%)
Query: 19 SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 78
+L++ + + PD+ + L + L ELP + + L + N + +LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 79 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDL 138
+A +++ +L + T L E +AS + E G L L L L
Sbjct: 145 SIASLNRLRELSIRA----------CPELTELPEPLASTD---ASGEHQG-LVNLQSLRL 190
Query: 139 HQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL 184
I S+P+SI+ +L + N+ LSAL + L KL LDL
Sbjct: 191 EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 13 RLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 72
RL L+ + + ++PD L + N L+ LP+S+ L + + C
Sbjct: 102 RLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLREL-SIRAC 160
Query: 73 --ITSLPEDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIAS----KNL------ 119
+T LPE LA D G +++ +L WT + L AS +NL
Sbjct: 161 PELTELPEPLAST------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR 214
Query: 120 ---LNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGN-NALSALPAELG 174
L+ + I L +L LDL L + P G L + + + L LP ++
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274
Query: 175 KLSKLGTLDL 184
+L++L LDL
Sbjct: 275 RLTQLEKLDL 284
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 18/194 (9%)
Query: 259 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 318
E A DL+ AT+ + L L + L P + + + + + E
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVA--LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXE 118
Query: 319 LPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQ 378
LP A L+TL L+RN ++ P +I N LR++ + P +
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRALPASIASL-----------NRLREL---SIRACP--E 162
Query: 379 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIP 438
+ +L +AS + L +LQ L L +R P + L ++
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG 222
Query: 439 EGFKNLTSLTELDL 452
+L L ELDL
Sbjct: 223 PAIHHLPKLEELDL 236
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 32/174 (18%)
Query: 309 LDLSRNSIQELPPELSSCA----SLQTLILSRNKIKDWPDA--IXXXXXXXXXXXXDNNP 362
LDLS N + E + S+C SLQTL+LS+N ++ I N
Sbjct: 365 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 424
Query: 363 LRQVP---------------SDGFKDIPM-----LQILDLSYNIASLPENPPFSSLPHLQ 402
+P S G + + L++LD+S N +L F LP LQ
Sbjct: 425 FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN--NLDSFSLF--LPRLQ 480
Query: 403 ELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 455
ELY+ R +L+ P S N L+S+P+G F LTSL ++ L N
Sbjct: 481 ELYISRNKLKTLPDASLFPVLLVMKIAS-NQLKSVPDGIFDRLTSLQKIWLHTN 533
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 439 EGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 489
+ F +L SL LDLSDN++S+ + L L GNP +++ T L
Sbjct: 94 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 144
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 73 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLS 131
TS+P L + M LD+ NK+T + + + + L LI + +N + + SL
Sbjct: 43 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 100
Query: 132 RLIRLDLHQNRILSIPSSISGCCSLAEF--YMGN 163
L LDL N + S+ SS G S ++ MGN
Sbjct: 101 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 292 NLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXXX 350
+ ++IPS + A + LDLS N I + +L +CA+LQ LIL ++I
Sbjct: 42 SFTSIPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 99
Query: 351 XXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 404
+N L + S F + L+ L+L N +L F +L +LQ L
Sbjct: 100 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 154
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 293 LSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXX 351
L++IPS + EA + LDLS N I + +L C +LQ L+L+ N I
Sbjct: 43 LNSIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN----------- 89
Query: 352 XXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 406
+ D F + L+ LDLSYN S + F L L L L
Sbjct: 90 -------------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 67 KASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE- 125
K S+ + S+P L + K LD+ N++T +SN+ + L L+ + N +N + E
Sbjct: 37 KGSSGSLNSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94
Query: 126 TIGSLSRLIRLDLHQNRILSIPSS 149
+ SL L LDL N + ++ SS
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSS 118
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 35/209 (16%)
Query: 11 FDRLHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 69
F L L +L + N I KI P L + S NQLKELP + + L + +
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT--LQELRVH 129
Query: 70 NNCITSLPEDLAD---------------------------CSKMSKLDVEGNKLTVLSNN 102
N IT + + + + K+S + + +T +
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189
Query: 103 LIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFY 160
L S LTEL N + + ++ L+ L +L L N I ++ S++ L E +
Sbjct: 190 LPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246
Query: 161 MGNNALSALPAELGKLSKLGTLDLHSNQL 189
+ NN L +P L + + LH+N +
Sbjct: 247 LNNNKLVKVPGGLADHKYIQVVYLHNNNI 275
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 45 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNL 103
CS L+++P L L D + NN IT + + D + + L + NK++ +S
Sbjct: 38 CSDLGLEKVPKDLPPDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95
Query: 104 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMG 162
A L L SKN L +PE + L L +H+N I + S+ +G + +G
Sbjct: 96 FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 163 NNALSALPAELGKLSKLGTL 182
N L + E G + L
Sbjct: 154 TNPLKSSGIENGAFQGMKKL 173
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 23/101 (22%)
Query: 359 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXX 418
D N + +V + K + L L LS+N S +N ++ PHL+EL+L
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL------------ 247
Query: 419 XXXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISA 459
+ N L +P G + + + L +NNISA
Sbjct: 248 -----------NNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 18/262 (6%)
Query: 136 LDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 193
LDL N+I I +L + NN +S + P L KL L L NQLKE
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 194 VEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 253
+ + + + + L NPL++ S + NG + K
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGMKKLS 174
Query: 254 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 312
R+ + ++ T+ L + EL L+G ++ + + + + KL LS
Sbjct: 175 YIRIADT----------NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 313 RNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGF 371
NSI + L++ L+ L L+ NK+ P + +NN + + S+ F
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDF 283
Query: 372 KDIPMLQILDLSYNIASLPENP 393
P SY+ SL NP
Sbjct: 284 CP-PGYNTKKASYSGVSLFSNP 304
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 415
NN + ++ FK++ L L L N S F+ L L+ LYL + QL+E P
Sbjct: 61 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 27/97 (27%)
Query: 293 LSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXX 351
L++IPS + EA + LDLS N I + +L C +LQ L+L+ N I
Sbjct: 17 LNSIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN----------- 63
Query: 352 XXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 388
+ D F + L+ LDLSYN S
Sbjct: 64 -------------TIEEDSFSSLGSLEHLDLSYNYLS 87
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 67 KASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE- 125
K S+ + S+P L + K LD+ N++T +SN+ + L L+ + N +N + E
Sbjct: 11 KGSSGSLNSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 68
Query: 126 TIGSLSRLIRLDLHQNRILSIPSS 149
+ SL L LDL N + ++ SS
Sbjct: 69 SFSSLGSLEHLDLSYNYLSNLSSS 92
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 12 DRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASN 70
DR + K S NSI P G A+ D S+N++ + +S L RC+NL ++
Sbjct: 5 DRNGICKGSSGSLNSI---PS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS 59
Query: 71 NCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 129
N I ++ ED + + LD+ N L+ NL +SW + NLL +T+G
Sbjct: 60 NGINTIEEDSFSSLGSLEHLDLSYNYLS----NLSSSWFKPLSSLTFLNLLGNPYKTLGE 115
Query: 130 LS 131
S
Sbjct: 116 TS 117
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 35/129 (27%)
Query: 84 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI 143
+ ++ L+ G L L N LT + SKN + MPET ++ L+L RI
Sbjct: 371 NHLASLEKTGETLLTLKN--------LTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRI 422
Query: 144 LSIPSSISGCC----------------------SLAEFYMGNNALSALPAELGKLSKLGT 181
S++GC L E Y+ N L LP + L L
Sbjct: 423 ----HSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLP-DASLLPMLLV 477
Query: 182 LDLHSNQLK 190
L + NQLK
Sbjct: 478 LKISRNQLK 486
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 35/209 (16%)
Query: 11 FDRLHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 69
F L L +L + N I KI P L + S NQLKELP + + L + +
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT--LQELRVH 129
Query: 70 NNCITSLPEDLAD---------------------------CSKMSKLDVEGNKLTVLSNN 102
N IT + + + + K+S + + +T +
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189
Query: 103 LIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFY 160
L S LTEL N + + ++ L+ L +L L N I ++ S++ L E +
Sbjct: 190 LPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246
Query: 161 MGNNALSALPAELGKLSKLGTLDLHSNQL 189
+ NN L +P L + + LH+N +
Sbjct: 247 LNNNKLVKVPGGLADHKYIQVVYLHNNNI 275
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 45 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNL 103
CS L+++P L L D + NN IT + + D + + L + NK++ +S
Sbjct: 38 CSDLGLEKVPKDLPPDTALLDLQ--NNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95
Query: 104 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMG 162
A L L SKN L +PE + L L +H+N I + S+ +G + +G
Sbjct: 96 FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 163 NNALSALPAELGKLSKLGTL 182
N L + E G + L
Sbjct: 154 TNPLKSSGIENGAFQGMKKL 173
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 23/101 (22%)
Query: 359 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXX 418
D N + +V + K + L L LS+N S +N ++ PHL+EL+L
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL------------ 247
Query: 419 XXXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISA 459
+ N L +P G + + + L +NNISA
Sbjct: 248 -----------NNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 18/262 (6%)
Query: 136 LDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 193
LDL N+I I +L + NN +S + P L KL L L NQLKE
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 194 VEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 253
+ + + + + L NPL++ S + NG + K
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGMKKLS 174
Query: 254 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 312
R+ + ++ T+ L + EL L+G ++ + + + + KL LS
Sbjct: 175 YIRIADT----------NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 313 RNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGF 371
NSI + L++ L+ L L+ NK+ P + +NN + + S+ F
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDF 283
Query: 372 KDIPMLQILDLSYNIASLPENP 393
P SY+ SL NP
Sbjct: 284 CP-PGYNTKKASYSGVSLFSNP 304
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 415
NN + ++ FK++ L L L N S F+ L L+ LYL + QL+E P
Sbjct: 61 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 378 QILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTXXXXXXXXXXXXXSQNSLQS 436
++LDL N F+S PHL+EL L + P N L+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 437 IPEG-FKNLTSLTELDLSDNNI 457
IP G F L++LT+LD+S+N I
Sbjct: 95 IPLGVFTGLSNLTKLDISENKI 116
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 140/380 (36%), Gaps = 74/380 (19%)
Query: 113 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-P 170
++ + +PE I + +RL LDL +NRI ++ + L E + N +SA+ P
Sbjct: 16 VLCHRKRFVAVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73
Query: 171 AELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLT 230
L L TL L SN+LK + ++ L KL ++
Sbjct: 74 GAFNNLFNLRTLGLRSNRLKLIPLGV---------------------FTGLSNLTKLDIS 112
Query: 231 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV---TSKELS 287
N + LL Y+ L + E DL+ ++ R + ++L+
Sbjct: 113 ENKI------------VILLDYMFQDLYNLKSLEVG--DNDLVYISHRAFSGLNSLEQLT 158
Query: 288 LEGMNLSAIPSEIWEAGE---ITKL-DLSRNSIQELPPELSSCASLQTLILSRNKIKDW- 342
LE NL++IP+E + +L L+ N+I++ L+ L +S D
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLEISHWPYLDTM 216
Query: 343 -PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 401
P+ + N L VP + + L+ L+LSYN S E L L
Sbjct: 217 TPNCLYGLNLTSLSITHCN--LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 402 QELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISAXX 461
QE+ L QL P F+ L L L++S N ++
Sbjct: 275 QEIQLVGGQLAVVE----------------------PYAFRGLNYLRVLNVSGNQLTTLE 312
Query: 462 XXXXXXXXXXQALRLDGNPL 481
+ L LD NPL
Sbjct: 313 ESVFHSVGNLETLILDSNPL 332
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 366 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXX 425
+ + F+++P L+ILDL + F L HL EL L L +A
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA----------- 112
Query: 426 XXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 459
+ +G F+NL +LT LDLS N I +
Sbjct: 113 ----------VLKDGYFRNLKALTRLDLSKNQIRS 137
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 28 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD-CSKM 86
M P + + V DCS L +P+ + + +N IT L + D +++
Sbjct: 1 MACPSQCSCSGTTV--DCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQL 56
Query: 87 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
++LD++ N+LTVL + T LT+L + N L +P
Sbjct: 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 54
VFDRL L LD+ N + +P + T L + + NQLK +P
Sbjct: 49 VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 28 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD-CSKM 86
M P + + V DCS L +P+ + + +N IT L + D +++
Sbjct: 1 MACPSQCSCSGTTV--DCSGKSLASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQL 56
Query: 87 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 125
++LD++ N+LTVL + T LT+L + N L +P
Sbjct: 57 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 54
VFDRL L LD+ N + +P + T L + + NQLK +P
Sbjct: 49 VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 148 SSISGCCSLAEF---YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC 197
S I+G L + Y+GNN ++ + L +L+KL TL L NQ+ + AC
Sbjct: 120 SDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPLAC 171
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 44 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD-CSKMSKLDVEGNKLTVLSNN 102
DCS L +P+ + + +N IT L + D +++++LD++ N+LTVL
Sbjct: 23 DCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG 80
Query: 103 LIASWTMLTELIASKNLLNGMPE 125
+ T LT+L + N L +P
Sbjct: 81 VFDKLTQLTQLSLNDNQLKSIPR 103
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 10 VFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 54
VFDRL L LD+ N + +P + T L + + NQLK +P
Sbjct: 57 VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 294 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXX 353
SA PS+ +G T +D S S+ +P + + + Q L L N+I +
Sbjct: 9 SACPSQCSCSG--TTVDCSGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQL 64
Query: 354 XXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 406
DNN L +P+ F + L L L+ N + S+P F +L L ++L
Sbjct: 65 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG-AFDNLKSLTHIWL 117
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 395 FSSLPHLQELYLRRMQLREAPTXXXXX-XXXXXXXXSQNSLQSIPEG-FKNLTSLTELDL 452
F L +LQ+LY +L PT + N L+SIP G F NL SLT + L
Sbjct: 53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112
Query: 453 SDN 455
+N
Sbjct: 113 YNN 115
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 386 IASLPENPPFSSLPHLQELYLRRMQLRE-APTXXXXXXXXXXXXXSQNSLQSIPEG-FKN 443
+AS+P P Q L+L Q+ + P + N L +IP G F
Sbjct: 24 LASVPAGIPTDK----QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79
Query: 444 LTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 489
LT LT+LDL+DN++ + + L NP R I+
Sbjct: 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 88 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 146
+L + N++T L + L +L + N L +P + L++L +LDL+ N + SI
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 147 P-SSISGCCSLAEFYMGNN 164
P + SL Y+ NN
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 73 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLS 131
+ S+P + +++ L + N++T L + S T LT L + N L +P + L+
Sbjct: 31 LASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 132 RLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNN 164
+L L LH N++ SIP + SL Y+ NN
Sbjct: 89 KLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 120 LNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL-GKLSK 178
L +P I + ++++ L ++Q L P L + N L+ALP + KL+K
Sbjct: 31 LASVPAGIPTTTQVLHLYINQITKLE-PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 179 LGTLDLHSNQLK 190
L L LH NQLK
Sbjct: 90 LTHLALHINQLK 101
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 363 LRQVPSDGFKDIPM--LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTXXX 419
L+++P +DIP+ ++L + + + F LPHL +L L+R QL P
Sbjct: 20 LKEIP----RDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75
Query: 420 XXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDG 478
+N ++ I F L L L+L DN IS +L L
Sbjct: 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135
Query: 479 NPL 481
NP
Sbjct: 136 NPF 138
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 63 LSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-- 120
+ +F N+ I SL + + + +L + N+++ LS + T L EL ++N L
Sbjct: 43 VQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN 99
Query: 121 -NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL 179
NG+P LSRL LD N L S+ +L + NN L ++ LG LSKL
Sbjct: 100 LNGIPS--ACLSRLF-LD---NNELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKL 152
Query: 180 GTLDLHSNQL 189
LDLH N++
Sbjct: 153 EVLDLHGNEI 162
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 44 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDL-ADCSKMSKLDVEGNKLTVLSN 101
DC N+++ L + G + L+D K N I +PED A ++ L NKL + N
Sbjct: 579 DCVHNKVRHL-EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 9 YVFDRLHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELPSSL 57
++FD L L+S++ N + ++P I G L + + +SNQLK +P +
Sbjct: 164 HLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 23/172 (13%)
Query: 304 GEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNK--------IKDWPDAIXXXXXX 352
G + LDLS N I+ +L + + LQTL LS N+ K+ P
Sbjct: 347 GNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAF 406
Query: 353 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 412
P F+++ LQ+L+L+Y + LP L+ L L+ +
Sbjct: 407 TRLHI-------NAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Query: 413 EAPTXXX----XXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISA 459
+ S L SI + F +L ++ +DLS N+++
Sbjct: 460 DGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTC 511
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 4/169 (2%)
Query: 294 SAIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDW-PDAIXXXXX 351
AIP + + + LD S N++ LPP +SS +L + N+I PD+
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 352 XXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL 411
N L F ++ L +DLS N+ + F S + Q+++L + L
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 412 REAPTXXXXXXXXXXXXXSQNSLQ-SIPEGFKNLTSLTELDLSDNNISA 459
N + ++P+G L L L++S NN+
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 285 ELSLEGMNLSA-----IPSEIWEA-GEITKLDLSRNSIQELPPELSSCASLQTLILSRNK 338
E+S+E +NL I S + + +LDL+ + ELP L ++L+ L+LS NK
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312
Query: 339 IKDWPDAIXXXXXXXXXXXXDNNPLR-QVPSDGFKDIPMLQILDLSYNIASLPE--NPPF 395
++ N R ++ + +++ L+ LDLS++ + N
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372
Query: 396 SSLPHLQELYL 406
+L HLQ L L
Sbjct: 373 RNLSHLQSLNL 383
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 306 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 341
+T LDLS N ++ LPP L++ L+ L S N +++
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 306 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 341
+T LDLS N ++ LPP L++ L+ L S N +++
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 30/169 (17%)
Query: 293 LSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXXXX 351
LS +P +I +DLS N ++ L S+ + LQ L LSR +I+ D
Sbjct: 23 LSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH 80
Query: 352 XXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRRMQ 410
NP++ F + L+ ++ + +ASL S P Q + L+++
Sbjct: 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL------ESFPIGQLITLKKLN 134
Query: 411 LREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNI 457
+ + N + S +P F NLT+L +DLS N I
Sbjct: 135 V------------------AHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 30/169 (17%)
Query: 293 LSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXXXX 351
LS +P +I +DLS N ++ L S+ + LQ L LSR +I+ D
Sbjct: 18 LSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH 75
Query: 352 XXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRRMQ 410
NP++ F + L+ ++ + +ASL S P Q + L+++
Sbjct: 76 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE------SFPIGQLITLKKLN 129
Query: 411 LREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNI 457
+ + N + S +P F NLT+L +DLS N I
Sbjct: 130 V------------------AHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,532,401
Number of Sequences: 62578
Number of extensions: 432945
Number of successful extensions: 1789
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 523
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)