Query 010567
Match_columns 507
No_of_seqs 205 out of 3064
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 09:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 1.8E-45 6.3E-50 375.6 35.8 455 16-482 34-560 (606)
2 3vq2_A TLR4, TOLL-like recepto 100.0 6.7E-46 2.3E-50 378.9 32.4 452 15-483 32-559 (606)
3 3t6q_A CD180 antigen; protein- 100.0 4.2E-45 1.4E-49 372.9 38.0 462 17-493 14-547 (606)
4 3rgz_A Protein brassinosteroid 100.0 2.3E-45 7.9E-50 382.9 35.7 471 9-490 94-701 (768)
5 3rgz_A Protein brassinosteroid 100.0 1.6E-45 5.6E-50 384.0 30.8 471 7-491 69-561 (768)
6 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-43 3.9E-48 367.2 44.0 476 7-490 41-605 (680)
7 3vq2_A TLR4, TOLL-like recepto 100.0 7.1E-45 2.4E-49 371.3 30.2 450 17-487 13-539 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-42 4.5E-47 359.2 41.3 475 15-492 25-583 (680)
9 2z63_A TOLL-like receptor 4, v 100.0 1.2E-43 4E-48 360.0 30.0 428 15-483 28-532 (570)
10 4eco_A Uncharacterized protein 100.0 1.8E-42 6.2E-47 352.9 27.9 409 15-488 81-606 (636)
11 2z63_A TOLL-like receptor 4, v 100.0 5.8E-42 2E-46 347.5 30.9 433 16-492 8-517 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 8.9E-41 3E-45 337.0 36.5 455 15-483 26-511 (549)
13 4ecn_A Leucine-rich repeat pro 100.0 1.1E-41 3.8E-46 352.3 30.4 356 72-492 436-850 (876)
14 4ecn_A Leucine-rich repeat pro 100.0 3.8E-41 1.3E-45 348.2 31.2 383 49-482 436-864 (876)
15 4eco_A Uncharacterized protein 100.0 3.5E-41 1.2E-45 343.4 28.1 359 47-460 192-602 (636)
16 3j0a_A TOLL-like receptor 5; m 100.0 9.2E-41 3.1E-45 351.7 30.4 433 13-487 22-544 (844)
17 2z7x_B TOLL-like receptor 1, v 100.0 8E-41 2.7E-45 334.8 25.6 423 18-483 3-482 (520)
18 3j0a_A TOLL-like receptor 5; m 100.0 4.3E-39 1.5E-43 339.0 33.0 456 5-483 38-561 (844)
19 2z7x_B TOLL-like receptor 1, v 100.0 5.4E-40 1.8E-44 328.8 23.2 405 15-459 21-482 (520)
20 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-38 5.4E-43 320.6 29.0 461 14-492 4-496 (549)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.4E-38 2.2E-42 316.2 30.6 428 13-483 29-511 (562)
22 1jl5_A Outer protein YOPM; leu 100.0 5.3E-38 1.8E-42 306.0 25.1 392 13-483 9-430 (454)
23 4g8a_A TOLL-like receptor 4; l 100.0 6.7E-37 2.3E-41 314.7 34.1 451 15-482 52-580 (635)
24 1o6v_A Internalin A; bacterial 100.0 2.6E-36 8.7E-41 297.2 34.9 348 13-438 44-391 (466)
25 1jl5_A Outer protein YOPM; leu 100.0 2.3E-37 7.9E-42 301.5 26.6 373 36-483 9-410 (454)
26 1o6v_A Internalin A; bacterial 100.0 4.1E-36 1.4E-40 295.7 32.9 351 36-464 44-394 (466)
27 3v47_A TOLL-like receptor 5B a 100.0 6E-36 2E-40 294.5 30.7 370 41-484 13-410 (455)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.6E-36 1.9E-40 302.0 25.4 436 36-491 29-495 (562)
29 4g8a_A TOLL-like receptor 4; l 100.0 3.8E-35 1.3E-39 301.6 30.7 469 19-491 35-564 (635)
30 3v47_A TOLL-like receptor 5B a 100.0 7E-35 2.4E-39 286.9 28.6 366 18-435 13-408 (455)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-33 5.1E-38 274.9 29.6 212 9-237 36-248 (457)
32 4fmz_A Internalin; leucine ric 100.0 5.8E-33 2E-37 263.0 31.1 303 37-411 43-345 (347)
33 4fmz_A Internalin; leucine ric 100.0 6.1E-33 2.1E-37 262.8 30.4 307 80-483 40-347 (347)
34 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-32 4.2E-37 268.5 28.2 187 33-234 37-224 (457)
35 2id5_A Lingo-1, leucine rich r 100.0 8.9E-32 3E-36 266.1 26.3 192 40-233 13-211 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 2.3E-31 7.8E-36 256.0 27.9 305 60-458 44-352 (390)
37 2id5_A Lingo-1, leucine rich r 100.0 3.4E-31 1.2E-35 261.9 27.7 313 63-435 13-333 (477)
38 3o6n_A APL1; leucine-rich repe 100.0 3.2E-31 1.1E-35 254.9 26.0 304 37-412 44-352 (390)
39 3oja_B Anopheles plasmodium-re 100.0 3.1E-30 1.1E-34 261.4 28.1 305 60-458 50-358 (597)
40 3oja_B Anopheles plasmodium-re 100.0 7.1E-30 2.4E-34 258.8 26.7 191 37-234 50-244 (597)
41 1xku_A Decorin; proteoglycan, 100.0 5.3E-29 1.8E-33 233.7 27.1 284 39-385 32-329 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-29 7.1E-34 236.7 23.9 283 39-385 34-330 (332)
43 2ft3_A Biglycan; proteoglycan, 100.0 7.3E-29 2.5E-33 232.9 24.1 286 109-480 34-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 2.8E-28 9.7E-33 228.8 28.0 287 109-480 32-330 (330)
45 1z7x_W Ribonuclease inhibitor; 100.0 6E-32 2.1E-36 266.5 2.8 379 61-487 3-445 (461)
46 1z7x_W Ribonuclease inhibitor; 100.0 5.2E-32 1.8E-36 267.0 -0.7 371 15-458 3-440 (461)
47 3ogk_B Coronatine-insensitive 100.0 2E-30 6.8E-35 263.9 4.9 415 7-479 65-548 (592)
48 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-25 3.8E-30 225.6 30.3 258 108-458 40-297 (622)
49 3g06_A SSPH2 (leucine-rich rep 99.9 4E-25 1.4E-29 221.6 29.7 265 84-442 40-305 (622)
50 2z66_A Variable lymphocyte rec 99.9 1.4E-25 4.9E-30 208.1 19.9 247 181-484 11-263 (306)
51 2z80_A TOLL-like receptor 2, v 99.9 4.7E-26 1.6E-30 215.7 15.8 199 13-213 29-236 (353)
52 4fcg_A Uncharacterized protein 99.9 1.2E-25 4E-30 209.9 18.1 225 13-237 79-316 (328)
53 2z80_A TOLL-like receptor 2, v 99.9 7.4E-26 2.5E-30 214.4 16.2 272 153-485 30-317 (353)
54 2p1m_B Transport inhibitor res 99.9 6.4E-29 2.2E-33 253.0 -5.5 224 9-232 60-324 (594)
55 1ogq_A PGIP-2, polygalacturona 99.9 5.4E-26 1.8E-30 211.0 13.4 182 296-480 117-302 (313)
56 3ogk_B Coronatine-insensitive 99.9 1.3E-27 4.3E-32 243.3 1.6 389 9-455 106-548 (592)
57 2z66_A Variable lymphocyte rec 99.9 3.6E-25 1.2E-29 205.4 17.7 112 301-412 147-261 (306)
58 1ogq_A PGIP-2, polygalacturona 99.9 4.7E-25 1.6E-29 204.6 16.3 174 38-234 50-233 (313)
59 3zyi_A Leucine-rich repeat-con 99.9 5.3E-24 1.8E-28 208.5 24.7 242 180-482 57-303 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 7.4E-24 2.5E-28 206.7 25.0 181 300-482 108-292 (440)
61 4fcg_A Uncharacterized protein 99.9 4.5E-24 1.6E-28 199.1 20.0 236 130-461 80-317 (328)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-23 4.1E-28 192.9 22.1 182 301-482 53-238 (285)
63 3zyj_A Leucine-rich repeat-con 99.9 2.4E-23 8.3E-28 203.1 24.2 204 30-235 35-244 (440)
64 2p1m_B Transport inhibitor res 99.9 7.9E-27 2.7E-31 237.6 -1.6 169 18-186 46-244 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-24 6E-29 201.4 13.9 225 201-494 36-263 (317)
66 2o6q_A Variable lymphocyte rec 99.9 3.7E-23 1.3E-27 187.8 22.2 203 279-483 14-219 (270)
67 3zyi_A Leucine-rich repeat-con 99.9 3.8E-23 1.3E-27 202.4 23.5 196 38-235 54-255 (452)
68 3o53_A Protein LRIM1, AGAP0063 99.9 8.1E-25 2.8E-29 203.6 9.5 210 16-233 11-225 (317)
69 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-23 4.5E-28 192.7 17.2 136 300-435 101-238 (285)
70 1wwl_A Monocyte differentiatio 99.9 1.3E-25 4.3E-30 208.6 2.5 178 303-484 120-311 (312)
71 1wwl_A Monocyte differentiatio 99.9 2.9E-24 1E-28 199.4 7.6 152 36-190 41-214 (312)
72 3oja_A Leucine-rich immune mol 99.9 2.1E-23 7.2E-28 205.2 10.9 167 305-476 100-269 (487)
73 3oja_A Leucine-rich immune mol 99.9 1E-22 3.5E-27 200.3 15.7 226 200-494 35-263 (487)
74 1h6u_A Internalin H; cell adhe 99.9 4.1E-22 1.4E-26 184.2 17.0 198 35-240 38-235 (308)
75 2z62_A TOLL-like receptor 4, v 99.9 7.9E-22 2.7E-26 179.9 18.4 216 18-235 10-237 (276)
76 2z62_A TOLL-like receptor 4, v 99.9 6.7E-22 2.3E-26 180.3 17.8 203 281-483 28-238 (276)
77 1p9a_G Platelet glycoprotein I 99.9 2.2E-21 7.6E-26 177.5 20.0 197 281-483 10-209 (290)
78 1h6u_A Internalin H; cell adhe 99.9 1.3E-21 4.3E-26 180.9 18.0 200 11-218 37-236 (308)
79 2o6q_A Variable lymphocyte rec 99.9 1.1E-20 3.9E-25 171.4 21.7 157 302-458 59-218 (270)
80 1p9a_G Platelet glycoprotein I 99.9 7E-21 2.4E-25 174.1 19.2 201 174-435 7-208 (290)
81 3m19_A Variable lymphocyte rec 99.9 1.3E-20 4.6E-25 168.9 19.7 178 305-484 15-194 (251)
82 2xwt_C Thyrotropin receptor; s 99.9 3.4E-21 1.2E-25 171.6 14.0 194 281-479 31-236 (239)
83 2ca6_A RAN GTPase-activating p 99.9 4.8E-22 1.6E-26 190.6 7.7 231 6-236 23-317 (386)
84 3rfs_A Internalin B, repeat mo 99.9 3.8E-20 1.3E-24 168.0 19.8 181 300-483 37-219 (272)
85 2xwt_C Thyrotropin receptor; s 99.9 3.5E-21 1.2E-25 171.5 12.3 194 293-491 23-227 (239)
86 3rfs_A Internalin B, repeat mo 99.8 1.9E-20 6.6E-25 170.0 16.8 193 281-482 41-235 (272)
87 3m19_A Variable lymphocyte rec 99.8 8.9E-20 3E-24 163.6 19.0 178 281-460 14-194 (251)
88 2ca6_A RAN GTPase-activating p 99.8 5.7E-22 2E-26 190.1 3.9 164 296-459 114-317 (386)
89 4glp_A Monocyte differentiatio 99.8 1E-20 3.5E-25 175.4 9.9 219 15-235 64-307 (310)
90 1h6t_A Internalin B; cell adhe 99.8 1.2E-19 4.2E-24 166.1 15.1 172 12-191 43-214 (291)
91 3cvr_A Invasion plasmid antige 99.8 4.5E-19 1.5E-23 175.6 19.5 189 281-493 59-254 (571)
92 4glp_A Monocyte differentiatio 99.8 8.1E-20 2.8E-24 169.3 13.1 199 13-213 89-308 (310)
93 3goz_A Leucine-rich repeat-con 99.8 1.7E-20 5.8E-25 177.9 6.8 155 304-458 109-297 (362)
94 1h6t_A Internalin B; cell adhe 99.8 3E-19 1E-23 163.5 14.6 170 303-483 45-214 (291)
95 3cvr_A Invasion plasmid antige 99.8 1.6E-18 5.6E-23 171.6 19.2 178 39-236 60-244 (571)
96 3goz_A Leucine-rich repeat-con 99.8 3.5E-20 1.2E-24 175.8 6.3 80 20-99 3-95 (362)
97 1m9s_A Internalin B; cell inva 99.8 2.5E-18 8.4E-23 172.3 16.3 175 11-193 39-213 (605)
98 2ast_B S-phase kinase-associat 99.8 2.1E-19 7.2E-24 169.0 7.6 144 86-232 49-205 (336)
99 2ast_B S-phase kinase-associat 99.8 2E-19 6.7E-24 169.2 7.0 170 17-188 49-233 (336)
100 2o6s_A Variable lymphocyte rec 99.8 3.2E-18 1.1E-22 148.8 14.0 177 283-467 9-188 (208)
101 4ay9_X Follicle-stimulating ho 99.8 2.7E-18 9.1E-23 161.9 13.5 204 284-489 12-222 (350)
102 2xot_A Amphoterin-induced prot 99.8 2.5E-18 8.6E-23 162.7 12.5 175 307-483 21-203 (361)
103 3e6j_A Variable lymphocyte rec 99.8 1.7E-17 5.7E-22 146.2 17.0 151 306-458 21-172 (229)
104 4ezg_A Putative uncharacterize 99.8 4.2E-18 1.4E-22 146.5 12.5 151 36-190 42-194 (197)
105 4ezg_A Putative uncharacterize 99.8 5.5E-18 1.9E-22 145.7 13.1 153 324-483 41-195 (197)
106 1xeu_A Internalin C; cellular 99.8 2.9E-18 9.9E-23 154.3 11.3 169 283-462 21-189 (263)
107 1xeu_A Internalin C; cellular 99.8 1.2E-18 4.2E-23 156.8 8.9 171 13-192 17-187 (263)
108 1m9s_A Internalin B; cell inva 99.8 7.3E-18 2.5E-22 168.9 15.3 171 281-461 43-213 (605)
109 2o6s_A Variable lymphocyte rec 99.8 1.1E-17 3.8E-22 145.4 14.5 168 306-482 9-178 (208)
110 4ay9_X Follicle-stimulating ho 99.7 3.2E-17 1.1E-21 154.4 17.8 196 41-238 12-218 (350)
111 3e6j_A Variable lymphocyte rec 99.7 3E-17 1E-21 144.6 16.4 153 329-484 21-174 (229)
112 2v9t_B SLIT homolog 2 protein 99.7 3.6E-17 1.2E-21 143.0 14.5 150 307-458 14-165 (220)
113 2v9t_B SLIT homolog 2 protein 99.7 5.2E-17 1.8E-21 142.0 14.8 151 283-435 13-165 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 4E-17 1.4E-21 142.7 13.8 150 284-435 14-166 (220)
115 2xot_A Amphoterin-induced prot 99.7 2.4E-17 8.3E-22 155.9 12.6 175 282-458 19-202 (361)
116 4fs7_A Uncharacterized protein 99.7 1.2E-15 4.1E-20 146.2 21.6 121 323-450 272-393 (394)
117 2v70_A SLIT-2, SLIT homolog 2 99.7 1.9E-16 6.3E-21 138.5 14.6 151 306-458 13-166 (220)
118 4fs7_A Uncharacterized protein 99.7 6E-15 2.1E-19 141.3 22.0 162 303-474 229-393 (394)
119 1dce_A Protein (RAB geranylger 99.7 1.6E-18 5.6E-23 172.6 -4.3 107 132-239 442-550 (567)
120 1dce_A Protein (RAB geranylger 99.7 1.8E-18 6.1E-23 172.3 -4.5 118 110-229 443-567 (567)
121 2ell_A Acidic leucine-rich nuc 99.7 4.1E-16 1.4E-20 130.3 10.5 134 37-171 23-164 (168)
122 3sb4_A Hypothetical leucine ri 99.6 1.7E-16 5.7E-21 148.3 8.3 101 303-405 225-327 (329)
123 2ell_A Acidic leucine-rich nuc 99.6 7.7E-16 2.6E-20 128.7 10.9 136 13-149 22-165 (168)
124 4fdw_A Leucine rich hypothetic 99.6 2E-14 6.7E-19 137.0 19.2 178 301-485 200-386 (401)
125 3sb4_A Hypothetical leucine ri 99.6 4.9E-16 1.7E-20 145.1 7.1 166 326-494 100-322 (329)
126 2je0_A Acidic leucine-rich nuc 99.6 2.3E-15 7.8E-20 123.0 8.9 126 13-139 15-148 (149)
127 2je0_A Acidic leucine-rich nuc 99.6 3.4E-15 1.1E-19 122.0 9.3 126 350-478 16-149 (149)
128 1a9n_A U2A', U2A'; complex (nu 99.6 4.2E-15 1.4E-19 125.1 9.6 131 34-165 15-151 (176)
129 2wfh_A SLIT homolog 2 protein 99.6 2.5E-14 8.6E-19 121.9 12.9 124 41-166 13-138 (193)
130 4gt6_A Cell surface protein; l 99.6 6E-13 2E-17 127.4 23.7 127 323-455 261-388 (394)
131 4fdw_A Leucine rich hypothetic 99.6 7.1E-14 2.4E-18 133.1 17.1 203 282-492 158-368 (401)
132 1a9n_A U2A', U2A'; complex (nu 99.6 5.6E-15 1.9E-19 124.3 8.0 134 10-144 14-153 (176)
133 1w8a_A SLIT protein; signaling 99.5 3.5E-14 1.2E-18 121.2 12.0 125 41-167 11-139 (192)
134 4b8c_D Glucose-repressible alc 99.5 4E-15 1.4E-19 153.0 7.2 113 77-190 217-329 (727)
135 4b8c_D Glucose-repressible alc 99.5 2.9E-14 1E-18 146.6 13.1 134 367-502 216-350 (727)
136 2wfh_A SLIT homolog 2 protein 99.5 6E-14 2.1E-18 119.6 12.9 125 308-435 14-139 (193)
137 4gt6_A Cell surface protein; l 99.5 9.4E-13 3.2E-17 126.0 22.3 131 299-434 260-390 (394)
138 1w8a_A SLIT protein; signaling 99.5 5.9E-14 2E-18 119.7 11.8 127 284-412 11-139 (192)
139 2o6r_A Variable lymphocyte rec 99.5 2.8E-13 9.7E-18 114.0 15.5 129 354-485 10-140 (177)
140 2o6r_A Variable lymphocyte rec 99.5 2.6E-13 8.7E-18 114.3 14.3 127 307-435 10-137 (177)
141 1ds9_A Outer arm dynein; leuci 99.5 8.1E-16 2.8E-20 132.2 -5.5 131 11-144 14-153 (198)
142 1ds9_A Outer arm dynein; leuci 99.4 3.1E-15 1.1E-19 128.6 -3.8 129 7-137 40-180 (198)
143 4h09_A Hypothetical leucine ri 99.4 8.5E-11 2.9E-15 112.0 24.3 140 323-467 213-354 (379)
144 4h09_A Hypothetical leucine ri 99.4 5.5E-11 1.9E-15 113.2 21.3 130 303-437 216-347 (379)
145 3g39_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 104.3 10.6 103 40-144 11-115 (170)
146 2r9u_A Variable lymphocyte rec 99.3 6.9E-12 2.3E-16 104.8 10.4 102 41-144 15-118 (174)
147 3un9_A NLR family member X1; l 99.3 1.2E-13 4.1E-18 130.3 -1.3 157 303-459 71-253 (372)
148 3g39_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 101.9 11.8 105 306-412 11-115 (170)
149 2r9u_A Variable lymphocyte rec 99.3 2.2E-11 7.5E-16 101.7 12.1 106 307-414 15-120 (174)
150 3un9_A NLR family member X1; l 99.2 3.4E-12 1.2E-16 120.3 0.9 153 61-213 72-253 (372)
151 2ifg_A High affinity nerve gro 99.0 7.6E-10 2.6E-14 104.0 10.0 102 42-144 12-116 (347)
152 2ifg_A High affinity nerve gro 99.0 2.1E-09 7.2E-14 100.9 10.2 101 285-387 12-115 (347)
153 2ra8_A Uncharacterized protein 98.8 2.3E-09 7.9E-14 100.1 5.7 176 300-480 135-341 (362)
154 1io0_A Tropomodulin; LRR prote 98.8 3.8E-09 1.3E-13 88.9 5.5 113 8-120 29-163 (185)
155 2ra8_A Uncharacterized protein 98.8 6.8E-09 2.3E-13 96.9 7.6 80 35-116 136-227 (362)
156 1io0_A Tropomodulin; LRR prote 98.6 1.1E-08 3.7E-13 86.1 3.5 114 30-143 28-163 (185)
157 3e4g_A ATP synthase subunit S, 98.2 1.8E-07 6E-12 76.4 -0.8 34 328-361 62-95 (176)
158 3rw6_A Nuclear RNA export fact 98.1 7.9E-07 2.7E-11 78.5 2.2 100 36-137 139-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.5E-11 69.9 3.3 81 61-141 61-149 (176)
160 1pgv_A TMD-1, tropomodulin TMD 98.0 8.9E-06 3E-10 67.7 6.9 106 36-141 39-167 (197)
161 3rw6_A Nuclear RNA export fact 97.9 8.8E-06 3E-10 71.8 5.1 60 398-458 169-233 (267)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 1.2E-05 4.2E-10 66.8 3.4 112 9-120 35-169 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.0012 3.9E-08 51.3 6.6 54 403-458 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0045 1.5E-07 47.9 5.8 54 42-97 12-68 (130)
165 2lz0_A Uncharacterized protein 89.5 0.66 2.3E-05 33.5 5.3 45 339-384 8-52 (100)
166 2lz0_A Uncharacterized protein 88.4 0.73 2.5E-05 33.3 4.9 49 360-409 5-53 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-45 Score=375.59 Aligned_cols=455 Identities=20% Similarity=0.241 Sum_probs=269.6
Q ss_pred CCCEEEcCCCccccc-CccccCCCcccEEeCCCCCCCCC-chhhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEEcC
Q 010567 16 MLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVE 92 (507)
Q Consensus 16 ~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~ 92 (507)
++++|+++++.+..+ +.+|+.+++|++|++++|.+..+ |..+.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 466666666666654 44566666666666666666543 44566666666666666666543 4456666666666666
Q ss_pred CCcccccchhhhcCccccceeecCCccccccc-ccccCCCcccEEeccCCccccC-CCCCcCCCCCc--EEEcCCCCCcc
Q 010567 93 GNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLA--EFYMGNNALSA 168 (507)
Q Consensus 93 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~--~L~l~~~~~~~ 168 (507)
+|+++.+....+.++++|++|++++|.+..++ ..+..+++|+.|++++|.+..+ +..+..+++|+ .|++++|.+..
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 66666554444666666666666666665442 2233356666666666665544 23345555555 55555555543
Q ss_pred CCccccCC----------------------------------------------------CCCCEEEcCCCcccccchhh
Q 010567 169 LPAELGKL----------------------------------------------------SKLGTLDLHSNQLKEYCVEA 196 (507)
Q Consensus 169 l~~~l~~~----------------------------------------------------~~L~~L~l~~~~~~~~~~~~ 196 (507)
++...... .+|+.+++++|.+..++...
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 32211111 15666777777776665543
Q ss_pred hc--cccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccccccCCC-CHHHHHHHHhcCCCCCccccccchhhhh
Q 010567 197 CQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP-TPALLKYLRSRLPENEDSEASTTKEDLI 273 (507)
Q Consensus 197 ~~--~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (507)
.. .+|+++++++|.++.+|..+..+++|+.|++++|.++.+....+... ....+ .+...... ....
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-----~l~~n~~~------~~~~ 342 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL-----SIKGNTKR------LELG 342 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE-----ECCSCSSC------CBCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE-----ECCCCCcc------cccc
Confidence 22 23788888888777777777777788888888777765433221110 00000 00000000 0000
Q ss_pred hhhhccccccceEEecCCCCCCC---ChhhhcCCCccEEEcCCCccCcC-CccccCCCcCcEEecccCcccCCch-HHhh
Q 010567 274 TMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPD-AILT 348 (507)
Q Consensus 274 ~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~ 348 (507)
........+++.++++++.+..+ +..+..+++|++|++++|.+.++ |..+..+++|++|++++|.+.+..+ ..+.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 00111235667777777766643 44556667777777777776654 4456667777777777777665433 2356
Q ss_pred cCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCC---CCCCCCCCCCcCcEEEcccccCccc-ccchhccCCC
Q 010567 349 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL---PENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQL 424 (507)
Q Consensus 349 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L 424 (507)
.+++|++|++++|.+...++..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.++.+ |..+..+++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 67777777777777776666667777777777777776654 2234466677777777777777754 4556677777
Q ss_pred cEEEcCCCccccc-cccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCC
Q 010567 425 RILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 482 (507)
Q Consensus 425 ~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 482 (507)
++|++++|+++.+ |+.+.+++.| +|++++|+++.+++.....+++|+.|++++|++.
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 7777777777644 5667777777 7777777777666554333477777777777764
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.7e-46 Score=378.85 Aligned_cols=452 Identities=21% Similarity=0.222 Sum_probs=359.3
Q ss_pred CCCCEEEcCCCcccccCc-cccCCCcccEEeCCCCCCCCC-chhhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEEc
Q 010567 15 HMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDV 91 (507)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l 91 (507)
+++++|+++++.+..++. .|+.+++|++|++++|.++.+ |.++.++++|++|++++|.++.+ |..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 678899999988887644 788888999999998888866 55788888899999998888876 778888899999999
Q ss_pred CCCcccccchhhhcCccccceeecCCcccc--cccccccCCCcccEEeccCCccccC-CCCCcCCCCCc----EEEcCCC
Q 010567 92 EGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLA----EFYMGNN 164 (507)
Q Consensus 92 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~----~L~l~~~ 164 (507)
++|++..++...++++++|++|++++|.+. .+|..+..+++|++|++++|.+..+ +..++.+++|+ +|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 998888877666888889999999888886 4678888888999999998888765 34566555554 7888888
Q ss_pred CCccCCccccCCCCCCEEEcCCCcccc-----------------------------------------------------
Q 010567 165 ALSALPAELGKLSKLGTLDLHSNQLKE----------------------------------------------------- 191 (507)
Q Consensus 165 ~~~~l~~~l~~~~~L~~L~l~~~~~~~----------------------------------------------------- 191 (507)
.++.++.......+|+.+++++|.+..
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 888766555555578888877775420
Q ss_pred ------cchhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCcccc
Q 010567 192 ------YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA 265 (507)
Q Consensus 192 ------~~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (507)
.+.......|+.++++++.+..++ .+..+++|+.|++++|.+..++.. .... ......
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~--~l~~-------------L~~L~l 335 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL--DLPF-------------LKSLTL 335 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC--CCSS-------------CCEEEE
T ss_pred ccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC--CCCc-------------cceeec
Confidence 000011123888888888888877 788888888888888887665522 1111 000000
Q ss_pred ccchhhhhhhhhccccccceEEecCCCCCCC---ChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCC
Q 010567 266 STTKEDLITMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDW 342 (507)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~ 342 (507)
... ............+++.++++++.+..+ +..+..+++|++|++++|.+..+|..+..+++|++|++++|.+.+.
T Consensus 336 ~~n-~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 336 TMN-KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp ESC-SSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST
T ss_pred cCC-cCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCc
Confidence 000 000000122346889999999988754 7888899999999999999999998899999999999999999987
Q ss_pred ch-HHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCC-CCCCCCCCCCcCcEEEcccccCccc-ccchh
Q 010567 343 PD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREA-PTDIL 419 (507)
Q Consensus 343 ~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~ 419 (507)
.+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|+++.+ |..+.
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 66 567899999999999999999888889999999999999999887 4677889999999999999999965 56688
Q ss_pred ccCCCcEEEcCCCccccc-cccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCC
Q 010567 420 RLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 420 ~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 483 (507)
.+++|++|++++|+++++ |..+.++++|++|++++|+++.+|+.+..++++|+.|++++|++..
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 999999999999999977 7889999999999999999999999877774479999999999864
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.2e-45 Score=372.93 Aligned_cols=462 Identities=21% Similarity=0.261 Sum_probs=375.2
Q ss_pred CCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCC-chhhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEEcCCC
Q 010567 17 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGN 94 (507)
Q Consensus 17 L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~ 94 (507)
-+.++.++..++.+|..+. +++++|++++|.++.+ |..+.++++|++|++++|.+..+ |..|.++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 4678899999999988764 4799999999999977 56899999999999999999866 678999999999999999
Q ss_pred cccccchhhhcCccccceeecCCcccccc-cccccCCCcccEEeccCCccccCC-CCCcCCCCCcEEEcCCCCCccC-Cc
Q 010567 95 KLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PA 171 (507)
Q Consensus 95 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l-~~ 171 (507)
++..+.+..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..++ ..+..+++|++|++++|.++.+ +.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 99998888899999999999999999887 577899999999999999999763 3444599999999999999966 55
Q ss_pred cccCCCCCC--EEEcCCCcccccchhhhc---------------------------------------------------
Q 010567 172 ELGKLSKLG--TLDLHSNQLKEYCVEACQ--------------------------------------------------- 198 (507)
Q Consensus 172 ~l~~~~~L~--~L~l~~~~~~~~~~~~~~--------------------------------------------------- 198 (507)
.++.+++|+ .+++++|.+...++....
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 688899999 899999988765543221
Q ss_pred --cccCeEECCCCCCCCCCcc-ccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhh
Q 010567 199 --LRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 275 (507)
Q Consensus 199 --~~L~~l~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (507)
..++.+++++|.+++++.. +..+++|+.|++++|.++.++...........+... ... .......
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~-----~n~-------l~~~~~~ 319 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS-----ANK-------FENLCQI 319 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECT-----TCC-------CSBGGGG
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECc-----cCC-------cCcCchh
Confidence 1478888999999886655 889999999999999998776543222111111100 000 0011112
Q ss_pred hhccccccceEEecCCCCC-CCChh-hhcCCCccEEEcCCCccCcC---CccccCCCcCcEEecccCcccCCchHHhhcC
Q 010567 276 ATRLSVTSKELSLEGMNLS-AIPSE-IWEAGEITKLDLSRNSIQEL---PPELSSCASLQTLILSRNKIKDWPDAILTSL 350 (507)
Q Consensus 276 ~~~~~~~l~~l~l~~~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~i---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 350 (507)
......+++.++++++.+. .++.. +..+++|++|++++|.+..+ +..+..+++|++|++++|.+.+..+..+..+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 2233468899999998776 55544 67789999999999998875 5668899999999999999988877788899
Q ss_pred CCCCEEEccCCCCCCCCc-cccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcc--c--ccchhccCCCc
Q 010567 351 SSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE--A--PTDILRLQQLR 425 (507)
Q Consensus 351 ~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--l--~~~~~~~~~L~ 425 (507)
++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.. + +..+..+++|+
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 999999999999887644 448899999999999999988888889999999999999999874 2 24578899999
Q ss_pred EEEcCCCccccc-cccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCccHHHHhhhH
Q 010567 426 ILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGT 493 (507)
Q Consensus 426 ~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 493 (507)
.|++++|.++++ |..+.++++|++|++++|+++..++.....+++| .|++++|+++.+.++.|...+
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~ 547 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHH
T ss_pred EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCC
Confidence 999999999977 6789999999999999999986554444444899 999999999999988776543
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-45 Score=382.87 Aligned_cols=471 Identities=26% Similarity=0.258 Sum_probs=251.6
Q ss_pred HhhcccCCCCEEEcCCCccc-ccCc--cccCCCcccEEeCCCCCCC-CCchhh-hcccCCCeEEcCCCcCccCC-cc---
Q 010567 9 YVFDRLHMLKSLDVSFNSIM-KIPD--EIGSATALVKFDCSSNQLK-ELPSSL-GRCLNLSDFKASNNCITSLP-ED--- 79 (507)
Q Consensus 9 ~~~~~~~~L~~L~l~~~~i~-~~~~--~~~~~~~L~~L~l~~~~l~-~~~~~~-~~~~~L~~L~l~~~~~~~l~-~~--- 79 (507)
..|+++++|++|++++|.+. .+|. .++.+++|++|++++|.+. .+|..+ .++++|++|++++|.++..+ ..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 44555555555555555554 3344 4555555555555555443 222222 34444444444444443221 11
Q ss_pred c----------------------cCCCCCcEEEcCCCcccccchhhhcCccccceeecCCcccc-cccccccCCCcccEE
Q 010567 80 L----------------------ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRL 136 (507)
Q Consensus 80 ~----------------------~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L 136 (507)
+ ..+++|++|++++|.+....+. +.++++|++|++++|.+. .+|..+..+++|++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 2 3444455555555444433322 445555555555555543 234444555555555
Q ss_pred eccCCccccCCCCCcCCCCCcEEEcCCCCCc-cCCccccCC-CCCCEEEcCCCcccc-cchhhhccc-cCeEECCCCCCC
Q 010567 137 DLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKL-SKLGTLDLHSNQLKE-YCVEACQLR-LSVLDLSNNSLS 212 (507)
Q Consensus 137 ~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~-~~L~~L~l~~~~~~~-~~~~~~~~~-L~~l~l~~~~~~ 212 (507)
++++|.+....... .+++|++|++++|.++ .+|..+... ++|++|++++|.+.. .+....... |++|++++|.+.
T Consensus 253 ~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 253 NISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp ECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc
Confidence 55555444221111 4444555555555444 444444332 555555555555442 222222222 555555555554
Q ss_pred -CCCcc-ccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhc-----CC------------------CCCcccccc
Q 010567 213 -GLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR-----LP------------------ENEDSEAST 267 (507)
Q Consensus 213 -~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------------~~~~~~~~~ 267 (507)
.+|.. +..+++|+.|++++|.++.. .+..+...... +. .........
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~--------~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGE--------LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEEC--------CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred CcCCHHHHhcCCCCCEEeCcCCccCcc--------ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 24433 45555555555555544311 11111111000 00 000000000
Q ss_pred -chhhhhhhhhccccccceEEecCCCCC-CCChhhhcCCCccEEEcCCCccCc-CCccccCCCcCcEEecccCcccCCch
Q 010567 268 -TKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPD 344 (507)
Q Consensus 268 -~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~-i~~~~~~~~~L~~L~l~~~~l~~~~~ 344 (507)
..............+++.|++++|.+. .+|..+..+++|+.|++++|.+.+ +|..+..+++|++|++++|.+.+..+
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 000001111222356677777777665 566667777777777777777663 66667777778888888887776666
Q ss_pred HHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCc-ccccch-----
Q 010567 345 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDI----- 418 (507)
Q Consensus 345 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~----- 418 (507)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccc
Confidence 66777888888888888877666666777888888888888777777777777777777777777655 333322
Q ss_pred -----------------------------------------------------------------hccCCCcEEEcCCCc
Q 010567 419 -----------------------------------------------------------------LRLQQLRILDLSQNS 433 (507)
Q Consensus 419 -----------------------------------------------------------------~~~~~L~~L~l~~~~ 433 (507)
..+++|+.|++++|.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 223556667777776
Q ss_pred cc-cccccccCCCCCCeEeCCCCCCC-CCCCcccCCCccCceEeccCCCCCCccHHHHh
Q 010567 434 LQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDGNPLRSIRRTILD 490 (507)
Q Consensus 434 l~-~l~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 490 (507)
++ .+|..+.++++|+.|++++|.++ .+|+.+..+ ++|+.|++++|+++..-+..|.
T Consensus 644 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L-~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL-RGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCEECCCGGGG
T ss_pred ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC-CCCCEEECCCCcccCcCChHHh
Confidence 66 55666777777777777777766 566666655 6777777777777644444333
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-45 Score=383.99 Aligned_cols=471 Identities=24% Similarity=0.259 Sum_probs=384.6
Q ss_pred cHHhhcccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCC-CCch--hhhcccCCCeEEcCCCcCc-cCCccc-c
Q 010567 7 LLYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK-ELPS--SLGRCLNLSDFKASNNCIT-SLPEDL-A 81 (507)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~-~~~~--~~~~~~~L~~L~l~~~~~~-~l~~~~-~ 81 (507)
+++++.++++|+.++++.+.+..+|..+..+++|++|++++|.+. .+|. .+.++++|++|++++|.+. .++..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 788999999999999999988888889999999999999999987 5777 8999999999999999887 455444 7
Q ss_pred CCCCCcEEEcCCCcccccchhh---hcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcE
Q 010567 82 DCSKMSKLDVEGNKLTVLSNNL---IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAE 158 (507)
Q Consensus 82 ~~~~L~~L~l~~~~l~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~ 158 (507)
.+++|++|++++|.++...... +.++++|++|++++|.+..... +..+++|++|++++|.+...+..+.++++|++
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~ 227 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQH 227 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCE
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCE
Confidence 8999999999999999877665 7899999999999998865433 37889999999999999865555999999999
Q ss_pred EEcCCCCCc-cCCccccCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCC-CCccccCC-CCccEEEccCCccc
Q 010567 159 FYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKM-TTLRKLLLTGNPLR 235 (507)
Q Consensus 159 L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~l~~l-~~L~~L~l~~~~~~ 235 (507)
|++++|.++ .+|..+..+++|++|++++|.+....+.....+|++|++++|.+++ +|..+... ++|+.|++++|.++
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred EECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 999999988 5677889999999999999988754444433458999999988874 77776654 88999999888876
Q ss_pred cccccccCCCCHHHHHHHHhcCCCCCcccccc--chhhhhhhhhccccccceEEecCCCCC-CCChhhhcCC-CccEEEc
Q 010567 236 TLRSSLVNGPTPALLKYLRSRLPENEDSEAST--TKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAG-EITKLDL 311 (507)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~-~L~~L~l 311 (507)
...+..+.. +.......... ....+.........+++.++++++.+. .+|..+..++ +|+.|++
T Consensus 308 ~~~p~~~~~------------l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 308 GAVPPFFGS------------CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp ECCCGGGGG------------CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred CccchHHhc------------CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 432222111 11111000000 000111111223467889999998887 7888888776 8999999
Q ss_pred CCCccCc-CCccccC--CCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccC
Q 010567 312 SRNSIQE-LPPELSS--CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 388 (507)
Q Consensus 312 ~~~~~~~-i~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~ 388 (507)
++|.+.+ +|..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 9998775 5655554 788999999999999877777899999999999999999877777999999999999999999
Q ss_pred CCCCCCCCCCCcCcEEEcccccCc-ccccchhccCCCcEEEcCCCccc-cccccccCCCCCCeEeCCCCCCC-CCCCccc
Q 010567 389 LPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELG 465 (507)
Q Consensus 389 ~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~-~~~~~~~ 465 (507)
+..+..+..+++|++|++++|++. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|+++ .+|+.+.
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 888888999999999999999998 78888999999999999999998 77999999999999999999998 7777777
Q ss_pred CCCccCceEeccCCCCC-CccHHHHhh
Q 010567 466 LLEPSLQALRLDGNPLR-SIRRTILDR 491 (507)
Q Consensus 466 ~~~~~L~~L~l~~n~~~-~~~~~~~~~ 491 (507)
.+ ++|+.|++++|+++ .++...|..
T Consensus 536 ~l-~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 536 DC-RSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp GC-TTCCEEECCSSEEESBCCGGGGTT
T ss_pred CC-CCCCEEECCCCccCCcCChHHhcc
Confidence 76 99999999999987 777766653
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-43 Score=367.18 Aligned_cols=476 Identities=25% Similarity=0.312 Sum_probs=313.9
Q ss_pred cHHhhcccCCCCEEEcCCCccccc-CccccCCCcccEEeCCCCCCCCCch-hhhcccCCCeEEcCCCcCccCC-ccccCC
Q 010567 7 LLYVFDRLHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADC 83 (507)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~ 83 (507)
.+.+|.++++|++|+++++.+..+ |..++.+++|++|++++|.++.+|. .+.++++|++|++++|.++.++ ..+..+
T Consensus 41 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 41 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 345677777777777777777655 5567777777777777777777765 4777777777777777777665 457777
Q ss_pred CCCcEEEcCCCcccccchhhhcCccccceeecCCcccccccc-cc--cCCCcccEEeccCCccccCCC-CCcCC------
Q 010567 84 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TI--GSLSRLIRLDLHQNRILSIPS-SISGC------ 153 (507)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~--~~~~~L~~L~l~~~~i~~l~~-~~~~~------ 153 (507)
++|++|++++|.++.+....+.++++|++|++++|.++.++. .+ ..+++|+.|++++|.+..++. .+..+
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 777777777777776665556777777777777777665542 22 245667777777666554322 22211
Q ss_pred ---------------------CCCcEEEcCCCCCccC-CccccCCC--CCCEEEcCCCcccccchhhh-c-cccCeEECC
Q 010567 154 ---------------------CSLAEFYMGNNALSAL-PAELGKLS--KLGTLDLHSNQLKEYCVEAC-Q-LRLSVLDLS 207 (507)
Q Consensus 154 ---------------------~~L~~L~l~~~~~~~l-~~~l~~~~--~L~~L~l~~~~~~~~~~~~~-~-~~L~~l~l~ 207 (507)
++|+.|++++|.+... |..+..++ +|++|++++|++..++.... . .+|++++++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 2344444444444322 22333332 25555555555554433221 1 225555555
Q ss_pred CCCCCC-CCcccc---------------------------------CCCCccEEEccCCccccccccccCCCC-HHHHHH
Q 010567 208 NNSLSG-LPPEIG---------------------------------KMTTLRKLLLTGNPLRTLRSSLVNGPT-PALLKY 252 (507)
Q Consensus 208 ~~~~~~-~~~~l~---------------------------------~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~ 252 (507)
+|.+.+ .+..+. .+++|+.|++++|.++.+....+.+.. ...+
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-- 358 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL-- 358 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE--
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE--
Confidence 555444 222344 444455555555544443322221100 0000
Q ss_pred HHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCC-ChhhhcCCCccEEEcCCCccCc-CC-ccccCCCcC
Q 010567 253 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-LP-PELSSCASL 329 (507)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-i~-~~~~~~~~L 329 (507)
.+...... ......... .......++.++++++.+..+ +..+..+++|+.|++++|.+.. +| ..+..+++|
T Consensus 359 ---~Ls~n~~~-~~~l~~~~f--~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L 432 (680)
T 1ziw_A 359 ---SLSNSFTS-LRTLTNETF--VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432 (680)
T ss_dssp ---ECTTCBSC-CCEECTTTT--GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTC
T ss_pred ---ECCCCchh-hhhcchhhh--cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccc
Confidence 00000000 000000000 001124688888888888754 4566778899999999998865 55 457888999
Q ss_pred cEEecccCcccCCchHHhhcCCCCCEEEccCCCCCC--CCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcc
Q 010567 330 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ--VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR 407 (507)
Q Consensus 330 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 407 (507)
++|++++|.+.......|..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+.+..+..+..+++|++|+++
T Consensus 433 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls 512 (680)
T 1ziw_A 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512 (680)
T ss_dssp CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCC
Confidence 999999999888888788889999999999988763 334558889999999999999988888888999999999999
Q ss_pred cccCccccc---------chhccCCCcEEEcCCCccccccc-cccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEecc
Q 010567 408 RMQLREAPT---------DILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLD 477 (507)
Q Consensus 408 ~~~i~~l~~---------~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 477 (507)
+|.++.++. .+..+++|+.|++++|.++.+|. .+.++++|++|++++|+++.+|+..+..+++|+.|+++
T Consensus 513 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp SSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECC
Confidence 998886532 26778999999999999998875 58899999999999999999988876666899999999
Q ss_pred CCCCCCccHHHHh
Q 010567 478 GNPLRSIRRTILD 490 (507)
Q Consensus 478 ~n~~~~~~~~~~~ 490 (507)
+|+++.+.+..|.
T Consensus 593 ~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 593 KNLITSVEKKVFG 605 (680)
T ss_dssp TSCCCBCCHHHHH
T ss_pred CCcCCccChhHhc
Confidence 9999999988776
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.1e-45 Score=371.27 Aligned_cols=450 Identities=23% Similarity=0.228 Sum_probs=354.0
Q ss_pred CCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCch-hhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEEcCCC
Q 010567 17 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGN 94 (507)
Q Consensus 17 L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~ 94 (507)
-+.++.++..++.+|..+. +++++|++++|.++.++. .+.++++|++|++++|.++.+ +..|.++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 4689999999999988664 789999999999997765 899999999999999999977 567999999999999999
Q ss_pred cccccchhhhcCccccceeecCCccccccc-ccccCCCcccEEeccCCccc--cCCCCCcCCCCCcEEEcCCCCCccC-C
Q 010567 95 KLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNNALSAL-P 170 (507)
Q Consensus 95 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~~~~l-~ 170 (507)
+++.+.+..+.++++|++|++++|.+..++ ..+..+++|++|++++|.+. .+|..+.++++|++|++++|.++.+ +
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 999998788999999999999999998876 67999999999999999998 4788999999999999999999865 4
Q ss_pred ccccCCCCC----CEEEcCCCcccccchhhhcc-ccCeEECCCCCCC---------------------------------
Q 010567 171 AELGKLSKL----GTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLS--------------------------------- 212 (507)
Q Consensus 171 ~~l~~~~~L----~~L~l~~~~~~~~~~~~~~~-~L~~l~l~~~~~~--------------------------------- 212 (507)
..++.+.+| +++++++|.+..++...... +|+++++++|.+.
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 456655554 48999999999887766544 4999999888653
Q ss_pred -------------------------CCCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCcccccc
Q 010567 213 -------------------------GLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 267 (507)
Q Consensus 213 -------------------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (507)
+..+.+..+++|+.++++++.+..++. .........+.......
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-l~~~~~L~~L~l~~n~l---------- 319 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQL---------- 319 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCC-CCTTCCCSEEEEESCCC----------
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhh-ccccccCCEEEcccccC----------
Confidence 111125567889999999998876651 11100000000000000
Q ss_pred chhhhhhhhhccccccceEEecCCCCC-CCChhhhcCCCccEEEcCCCccCcC---CccccCCCcCcEEecccCcccCCc
Q 010567 268 TKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQEL---PPELSSCASLQTLILSRNKIKDWP 343 (507)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~i---~~~~~~~~~L~~L~l~~~~l~~~~ 343 (507)
..+. .. ...+++.++++++... .+ .+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+...+
T Consensus 320 --~~lp-~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 392 (606)
T 3vq2_A 320 --KQFP-TL--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS 392 (606)
T ss_dssp --SSCC-CC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC
T ss_pred --cccc-cC--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch
Confidence 0000 11 3456777777776332 22 344677888888888877765 666778888888888888877765
Q ss_pred hHHhhcCCCCCEEEccCCCCCCCCc-cccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcc--cccchhc
Q 010567 344 DAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE--APTDILR 420 (507)
Q Consensus 344 ~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--l~~~~~~ 420 (507)
..+..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.. +|..+..
T Consensus 393 -~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 393 -ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp -CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred -hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 446778889999999988887765 568889999999999998888888888899999999999998885 6777889
Q ss_pred cCCCcEEEcCCCccccc-cccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCccHH
Q 010567 421 LQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRT 487 (507)
Q Consensus 421 ~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 487 (507)
+++|++|++++|.++.+ |..+.++++|++|++++|+++.+++.....+++|+.|++++|+++.++..
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 99999999999999876 56789999999999999999876443333348999999999999988876
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-42 Score=359.23 Aligned_cols=475 Identities=23% Similarity=0.279 Sum_probs=352.5
Q ss_pred CCCCEEEcCCCcccccCc-cccCCCcccEEeCCCCCCCCC-chhhhcccCCCeEEcCCCcCccCCc-cccCCCCCcEEEc
Q 010567 15 HMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDV 91 (507)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l 91 (507)
+++++|+++++.+..++. .|..+++|++|++++|.++.+ |..+.++++|++|++++|.++.+|. .|..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 689999999999997755 699999999999999999866 6678999999999999999999886 5999999999999
Q ss_pred CCCcccccchhhhcCccccceeecCCcccccc-cccccCCCcccEEeccCCccccCCCC---CcCCCCCcEEEcCCCCCc
Q 010567 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPSS---ISGCCSLAEFYMGNNALS 167 (507)
Q Consensus 92 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~l~~~---~~~~~~L~~L~l~~~~~~ 167 (507)
++|++..++...+.++++|++|++++|.+..+ +..+..+++|++|++++|.++.++.. ...+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999999888899999999999999998765 46688999999999999998876543 235689999999999888
Q ss_pred cC-CccccCC---------------------------CCCCEEEcCCCcccccchhhhc----cccCeEECCCCCCCCCC
Q 010567 168 AL-PAELGKL---------------------------SKLGTLDLHSNQLKEYCVEACQ----LRLSVLDLSNNSLSGLP 215 (507)
Q Consensus 168 ~l-~~~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~----~~L~~l~l~~~~~~~~~ 215 (507)
.+ |..+..+ ++|+.|++++|.+......... .+|+++++++|.+++++
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 55 3334433 5677777888777755443322 23999999999988854
Q ss_pred -ccccCCCCccEEEccCCccccccccccCCCC-HHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCC
Q 010567 216 -PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT-PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 293 (507)
Q Consensus 216 -~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 293 (507)
..++.+++|+.|++++|.+..+....+.+.. ...+......... ... ......+.........+++.++++++.+
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~--~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ-SIS--LASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc-ccc--cccccccChhhcccCCCCCEEECCCCcc
Confidence 5688999999999999988776544332211 0000000000000 000 0000000000112234556666666655
Q ss_pred CCCCh-hhhcCCC----------------------------ccEEEcCCCccCcC-CccccCCCcCcEEecccCcccC-C
Q 010567 294 SAIPS-EIWEAGE----------------------------ITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKD-W 342 (507)
Q Consensus 294 ~~~~~-~~~~~~~----------------------------L~~L~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~-~ 342 (507)
..++. .+..+++ |+.|++++|.+..+ |..+..+++|++|++++|.+.+ +
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 54332 2333444 45555555555553 4456777888888888887764 4
Q ss_pred chHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccC--CCCCCCCCCCCcCcEEEcccccCcccccc-hh
Q 010567 343 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS--LPENPPFSSLPHLQELYLRRMQLREAPTD-IL 419 (507)
Q Consensus 343 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~ 419 (507)
+...+..+++|++|++++|.+..++...+..+++|+.|++++|.+. +..+..+..+++|+.|++++|+++.++.. +.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 4456777888888888888887777777888888888888888765 44567788999999999999999977654 77
Q ss_pred ccCCCcEEEcCCCccccccc---------cccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCccHHHHh
Q 010567 420 RLQQLRILDLSQNSLQSIPE---------GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILD 490 (507)
Q Consensus 420 ~~~~L~~L~l~~~~l~~l~~---------~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 490 (507)
.+++|+.|++++|.++.++. .+.++++|++|++++|+++.+|+..+..+++|+.|++++|.++.+++.+|.
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 89999999999999886632 278899999999999999999987666669999999999999999998886
Q ss_pred hh
Q 010567 491 RG 492 (507)
Q Consensus 491 ~~ 492 (507)
..
T Consensus 582 ~l 583 (680)
T 1ziw_A 582 NQ 583 (680)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-43 Score=359.98 Aligned_cols=428 Identities=24% Similarity=0.267 Sum_probs=339.1
Q ss_pred CCCCEEEcCCCccccc-CccccCCCcccEEeCCCCCCCCCc-hhhhcccCCCeEEcCCCcCccCC-ccccCCCCCcEEEc
Q 010567 15 HMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91 (507)
Q Consensus 15 ~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l 91 (507)
+++++|+++++.+..+ +.+|+.+++|++|++++|+++.++ ..+.++++|++|++++|.++.++ ..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 5789999999988876 446888999999999999888774 56888899999999999888765 67888999999999
Q ss_pred CCCcccccchhhhcCccccceeecCCccccc--ccccccCCCcccEEeccCCccccCC-CCCcCCCCC----cEEEcCCC
Q 010567 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSL----AEFYMGNN 164 (507)
Q Consensus 92 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L----~~L~l~~~ 164 (507)
++|+++.++...++++++|++|++++|.+.. +|..+..+++|++|++++|.+..++ ..+..+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999888877668899999999999998865 6788888999999999999888654 456777777 78899988
Q ss_pred CCccCCccccCCCCCCEEEcCCCccc-------------------------------cc---------------------
Q 010567 165 ALSALPAELGKLSKLGTLDLHSNQLK-------------------------------EY--------------------- 192 (507)
Q Consensus 165 ~~~~l~~~l~~~~~L~~L~l~~~~~~-------------------------------~~--------------------- 192 (507)
.++.++.......+|+.+++++|... .+
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 88865443333347888877765211 00
Q ss_pred -------chhhh-ccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccc
Q 010567 193 -------CVEAC-QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 264 (507)
Q Consensus 193 -------~~~~~-~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (507)
+.... ...|+.++++++.+.++|..+..+ +|+.|++++|.+..++.
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~------------------------- 321 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT------------------------- 321 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB-------------------------
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc-------------------------
Confidence 00011 122566666666555555555555 66666666655543221
Q ss_pred cccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcC---CccccCCCcCcEEecccCcccC
Q 010567 265 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL---PPELSSCASLQTLILSRNKIKD 341 (507)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i---~~~~~~~~~L~~L~l~~~~l~~ 341 (507)
....+++.++++++........ ..+++|+.|++++|.+... +..+..+++|++|++++|.+.+
T Consensus 322 -------------~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 387 (570)
T 2z63_A 322 -------------LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387 (570)
T ss_dssp -------------CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE
T ss_pred -------------ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc
Confidence 1235778899988876633322 6789999999999998875 5667889999999999999988
Q ss_pred CchHHhhcCCCCCEEEccCCCCCCCCc-cccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCc--ccccch
Q 010567 342 WPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR--EAPTDI 418 (507)
Q Consensus 342 ~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~--~l~~~~ 418 (507)
.+.. +..+++|++|++++|.+.+.++ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+
T Consensus 388 ~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~ 466 (570)
T 2z63_A 388 MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466 (570)
T ss_dssp EEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred cccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh
Confidence 7766 7889999999999999887654 56889999999999999998888888999999999999999987 588889
Q ss_pred hccCCCcEEEcCCCccccc-cccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCC
Q 010567 419 LRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 419 ~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 483 (507)
..+++|+.|++++|+++.+ |..+.++++|++|++++|+++.+++.....+++|+.|++++|+++.
T Consensus 467 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 9999999999999999977 7889999999999999999998887655555999999999999864
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-42 Score=352.88 Aligned_cols=409 Identities=23% Similarity=0.355 Sum_probs=322.9
Q ss_pred CCCCEEEcCCCccc-ccCccccCCCcccEEeCCCCCCC-------------CCch---------------------hhh-
Q 010567 15 HMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-------------ELPS---------------------SLG- 58 (507)
Q Consensus 15 ~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~l~-------------~~~~---------------------~~~- 58 (507)
.+++.|+++++.+. .+|.+++.+++|++|++++|.+. .+|. .+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 46888889888887 67888888899999999888541 1111 010
Q ss_pred ------------------cccCCCeEEcC--CCcCccCCccccCCCCCcEEEcCCCcccc------------------cc
Q 010567 59 ------------------RCLNLSDFKAS--NNCITSLPEDLADCSKMSKLDVEGNKLTV------------------LS 100 (507)
Q Consensus 59 ------------------~~~~L~~L~l~--~~~~~~l~~~~~~~~~L~~L~l~~~~l~~------------------~~ 100 (507)
....++.+.+. .|.++.+|..+.++++|++|++++|+++. ++
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 00112222222 45666788889999999999999999887 55
Q ss_pred hhhhc--CccccceeecCCccc-ccccccccCCCcccEEeccCCc-ccc--CCCCCcCC------CCCcEEEcCCCCCcc
Q 010567 101 NNLIA--SWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNR-ILS--IPSSISGC------CSLAEFYMGNNALSA 168 (507)
Q Consensus 101 ~~~~~--~~~~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~-i~~--l~~~~~~~------~~L~~L~l~~~~~~~ 168 (507)
.. +. ++++|++|++++|.+ ..+|..+..+++|++|++++|. ++. +|..+..+ ++|++|++++|.++.
T Consensus 241 ~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 241 ED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp SC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred hh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 54 66 899999999999886 5678889999999999999997 774 77766665 899999999999999
Q ss_pred CCc--cccCCCCCCEEEcCCCccc-ccchhhhcc-ccCeEECCCCCCCCCCccccCCCC-ccEEEccCCccccccccccC
Q 010567 169 LPA--ELGKLSKLGTLDLHSNQLK-EYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTT-LRKLLLTGNPLRTLRSSLVN 243 (507)
Q Consensus 169 l~~--~l~~~~~L~~L~l~~~~~~-~~~~~~~~~-~L~~l~l~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~ 243 (507)
+|. .++.+++|++|++++|++. .++ ..... +|++|++++|.++.+|..+..+++ |+.|++++|.++.
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~------- 391 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY------- 391 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-------
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-------
Confidence 988 8999999999999999988 777 33333 489999999988888888888888 9999988887643
Q ss_pred CCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCCChhhhc--CCCccEEEcCCCccCc-CC
Q 010567 244 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE--AGEITKLDLSRNSIQE-LP 320 (507)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~-i~ 320 (507)
+|..+.. +++|+.|++++|.+.. +|
T Consensus 392 ----------------------------------------------------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 392 ----------------------------------------------------IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp ----------------------------------------------------CCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred ----------------------------------------------------cchhhhhcccCccCEEECcCCcCCCcch
Confidence 2333222 3478888888888776 45
Q ss_pred cccc-------CCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCC-------CceEEEccCcc
Q 010567 321 PELS-------SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP-------MLQILDLSYNI 386 (507)
Q Consensus 321 ~~~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~-------~L~~L~l~~~~ 386 (507)
..+. .+++|++|++++|.+..++...+..+++|++|++++|.++.++...+.... +|+.|++++|.
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 5565 677899999999999988888888899999999999999988776555443 89999999998
Q ss_pred cCCCCCCCCC--CCCcCcEEEcccccCcccccchhccCCCcEEEcCC------Cccc-cccccccCCCCCCeEeCCCCCC
Q 010567 387 ASLPENPPFS--SLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ------NSLQ-SIPEGFKNLTSLTELDLSDNNI 457 (507)
Q Consensus 387 ~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~------~~l~-~l~~~~~~l~~L~~L~l~~~~l 457 (507)
+.. .+..+. .+++|+.|++++|+++.+|..+..+++|+.|++++ |.+. .+|..+.++++|++|++++|++
T Consensus 500 l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 500 LTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCB-CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCc-cChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 884 445555 88999999999999999999999999999999954 5544 6788999999999999999999
Q ss_pred CCCCCcccCCCccCceEeccCCCCCCccHHH
Q 010567 458 SALPPELGLLEPSLQALRLDGNPLRSIRRTI 488 (507)
Q Consensus 458 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 488 (507)
+.+|..+. ++|+.|++++|++..++...
T Consensus 579 ~~ip~~~~---~~L~~L~Ls~N~l~~~~~~~ 606 (636)
T 4eco_A 579 RKVNEKIT---PNISVLDIKDNPNISIDLSY 606 (636)
T ss_dssp CBCCSCCC---TTCCEEECCSCTTCEEECTT
T ss_pred CccCHhHh---CcCCEEECcCCCCccccHHh
Confidence 98988744 79999999999998877433
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-42 Score=347.50 Aligned_cols=433 Identities=25% Similarity=0.270 Sum_probs=347.7
Q ss_pred CCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCc-hhhhcccCCCeEEcCCCcCccCC-ccccCCCCCcEEEcCC
Q 010567 16 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEG 93 (507)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~ 93 (507)
..+..+.++..+..+|..+ .+++++|++++|.++.++ .++.++++|++|++++|.++.++ ..|.++++|++|++++
T Consensus 8 ~~~~~~c~~~~l~~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 8 PNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTTEEECCSSCCSSCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEeCCCCccccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 3466788888888888755 357999999999999775 47899999999999999998774 5688999999999999
Q ss_pred CcccccchhhhcCccccceeecCCcccccccc-cccCCCcccEEeccCCcccc--CCCCCcCCCCCcEEEcCCCCCccC-
Q 010567 94 NKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAEFYMGNNALSAL- 169 (507)
Q Consensus 94 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~l~~~~~~~l- 169 (507)
|+++.++..+|.++++|++|++++|.+..++. .+..+++|++|++++|.+.. +|..+.++++|++|++++|.++.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 99999988889999999999999999988774 68899999999999999885 688899999999999999998865
Q ss_pred CccccCCCCC----CEEEcCCCcccccchhhhcc-ccCeEECCCCCCCC-------------------------------
Q 010567 170 PAELGKLSKL----GTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSG------------------------------- 213 (507)
Q Consensus 170 ~~~l~~~~~L----~~L~l~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~------------------------------- 213 (507)
+..++.+++| +.+++++|.+..++...... +|+++++++|....
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 4557777777 89999999988776655443 48888887763211
Q ss_pred ----------------------------CCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCcccc
Q 010567 214 ----------------------------LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA 265 (507)
Q Consensus 214 ----------------------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (507)
++..+..+++|+.++++++.++.++..
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~------------------------- 300 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF------------------------- 300 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC-------------------------
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh-------------------------
Confidence 122233344455555544444322211
Q ss_pred ccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCc--
Q 010567 266 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-- 343 (507)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~-- 343 (507)
. ... +++.++++++.+..+|. ..+++|+.|++++|.+...... ..+++|++|++++|.+....
T Consensus 301 ----------~-~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 301 ----------S-YNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp ----------C-SCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEE
T ss_pred ----------h-ccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccc
Confidence 1 112 67788888888777776 4677888888888876654332 67899999999999988764
Q ss_pred hHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCC-CCCCCCCcCcEEEcccccCcc-cccchhcc
Q 010567 344 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN-PPFSSLPHLQELYLRRMQLRE-APTDILRL 421 (507)
Q Consensus 344 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~-l~~~~~~~ 421 (507)
+..+..+++|++|++++|.+.+++.. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.. .+..+..+
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred cccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence 55678899999999999999888876 8999999999999998877654 568899999999999999984 56678899
Q ss_pred CCCcEEEcCCCccc--cccccccCCCCCCeEeCCCCCCCCC-CCcccCCCccCceEeccCCCCCCccHHHHhhh
Q 010567 422 QQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNNISAL-PPELGLLEPSLQALRLDGNPLRSIRRTILDRG 492 (507)
Q Consensus 422 ~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 492 (507)
++|++|++++|.++ .+|..+..+++|++|++++|+++.+ |..+.. +++|+.|++++|+++.+.+..|...
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-LSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc-ccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 99999999999987 5899999999999999999999976 444554 4999999999999999988777654
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.9e-41 Score=337.01 Aligned_cols=455 Identities=20% Similarity=0.253 Sum_probs=305.2
Q ss_pred CCCCEEEcCCCccccc-CccccCCCcccEEeCCCCCCCCCc-hhhhcccCCCeEEcCCCcCccCCcc-ccCCCCCcEEEc
Q 010567 15 HMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDV 91 (507)
Q Consensus 15 ~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l 91 (507)
++|++|+++++.+..+ +..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++.. +..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5667777777766654 445666677777777777666543 4566666777777777766665543 666677777777
Q ss_pred CCCcccccc-hhhhcCccccceeecCCcc-ccccc-ccccCCCcccEEeccCCcccc-CCCCCcCCCCCcEEEcCCCCCc
Q 010567 92 EGNKLTVLS-NNLIASWTMLTELIASKNL-LNGMP-ETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNALS 167 (507)
Q Consensus 92 ~~~~l~~~~-~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~i~~-l~~~~~~~~~L~~L~l~~~~~~ 167 (507)
++|+++.+. ...+.++++|++|++++|. +..++ ..+..+++|++|++++|.+.. .|..+..+++|++|+++++.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 776666432 2236666677777776665 44454 456666677777777666663 4556666667777777666665
Q ss_pred cCCccc-cCCCCCCEEEcCCCcccccchh-----hhccccCeEECCCCCCCC-----CCccccCCCCccEEEccCCcccc
Q 010567 168 ALPAEL-GKLSKLGTLDLHSNQLKEYCVE-----ACQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRT 236 (507)
Q Consensus 168 ~l~~~l-~~~~~L~~L~l~~~~~~~~~~~-----~~~~~L~~l~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~ 236 (507)
.++..+ ..+++|++|++++|++...+.. .....++.++++++.+++ ++..+..+++|+.+++++|.+..
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 544432 3466677777776666543211 112236666666665543 22233455667777776665544
Q ss_pred ccccccCCCCHHHHHHHHhcCCCCCcccccc--chh----hhhhhhhccccccceEEecCCCCCCCChhhh-cCCCccEE
Q 010567 237 LRSSLVNGPTPALLKYLRSRLPENEDSEAST--TKE----DLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKL 309 (507)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L 309 (507)
+........ .. .............. ... ...........+++.++++++.+..+|..+. .+++|++|
T Consensus 266 ~~~~~~~~~--~~----~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 266 LGDFNPSES--DV----VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp CSCCCCCTT--TC----CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE
T ss_pred cccccccch--hh----hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE
Confidence 321100000 00 00000000000000 000 0000111234678999999999999998885 69999999
Q ss_pred EcCCCccCc-CC---ccccCCCcCcEEecccCcccCCch--HHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEcc
Q 010567 310 DLSRNSIQE-LP---PELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 383 (507)
Q Consensus 310 ~l~~~~~~~-i~---~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~ 383 (507)
++++|.+.+ +| ..+..+++|++|++++|.+++++. ..+..+++|++|++++|.++.++.. +..+++|+.|+++
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls 418 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLS 418 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECT
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECC
Confidence 999999887 32 336788999999999999988754 5578899999999999999988764 7889999999999
Q ss_pred CcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCccccccccccCCCCCCeEeCCCCCCCCCCCc
Q 010567 384 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 463 (507)
Q Consensus 384 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~ 463 (507)
+|.+...... ..++|+.|++++|+++.++ ..+++|++|++++|+++.+|. ...+++|++|++++|+++.+++.
T Consensus 419 ~N~l~~l~~~---~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 419 STGIRVVKTC---IPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp TSCCSCCCTT---SCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcccccch---hcCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHH
Confidence 9988754332 2368999999999999765 478999999999999999987 46799999999999999988876
Q ss_pred ccCCCccCceEeccCCCCCC
Q 010567 464 LGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 464 ~~~~~~~L~~L~l~~n~~~~ 483 (507)
....+++|+.|++++|++..
T Consensus 492 ~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp GGGGCTTCCEEECCSSCBCC
T ss_pred HHhcCcccCEEEecCCCccC
Confidence 54445999999999999864
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-41 Score=352.26 Aligned_cols=356 Identities=24% Similarity=0.347 Sum_probs=234.6
Q ss_pred cCccCCccccCCCCCcEEEcCCCcccc------------------cchhhhc--CccccceeecCCccc-ccccccccCC
Q 010567 72 CITSLPEDLADCSKMSKLDVEGNKLTV------------------LSNNLIA--SWTMLTELIASKNLL-NGMPETIGSL 130 (507)
Q Consensus 72 ~~~~l~~~~~~~~~L~~L~l~~~~l~~------------------~~~~~~~--~~~~L~~L~l~~~~~-~~~~~~~~~~ 130 (507)
.++.+|..+..+++|+.|++++|+++. ++.. +. ++++|++|++++|.+ ..+|..+..+
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 333455555555555555555555554 3333 22 555555555555443 3344445555
Q ss_pred CcccEEeccCCc-ccc--CCCCCcC-------CCCCcEEEcCCCCCccCCc--cccCCCCCCEEEcCCCcccccchhhhc
Q 010567 131 SRLIRLDLHQNR-ILS--IPSSISG-------CCSLAEFYMGNNALSALPA--ELGKLSKLGTLDLHSNQLKEYCVEACQ 198 (507)
Q Consensus 131 ~~L~~L~l~~~~-i~~--l~~~~~~-------~~~L~~L~l~~~~~~~l~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~ 198 (507)
++|+.|++++|. ++. +|..+.. +++|++|++++|.++.+|. .++.+++|+.|++++|++..++ ....
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~ 593 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGT 593 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCT
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcC
Confidence 555555555554 432 3332222 2255555555555555554 4555555555555555544444 1111
Q ss_pred -cccCeEECCCCCCCCCCccccCCCC-ccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhh
Q 010567 199 -LRLSVLDLSNNSLSGLPPEIGKMTT-LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 276 (507)
Q Consensus 199 -~~L~~l~l~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (507)
.+|+.|++++|.+..+|..+..+++ |+.|++++
T Consensus 594 L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~--------------------------------------------- 628 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH--------------------------------------------- 628 (876)
T ss_dssp TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS---------------------------------------------
T ss_pred CCcceEEECcCCccccchHHHhhccccCCEEECcC---------------------------------------------
Confidence 1255555555554444444444444 55555544
Q ss_pred hccccccceEEecCCCCCCCChhhhcC--CCccEEEcCCCccCcCCcc----cc--CCCcCcEEecccCcccCCchHHhh
Q 010567 277 TRLSVTSKELSLEGMNLSAIPSEIWEA--GEITKLDLSRNSIQELPPE----LS--SCASLQTLILSRNKIKDWPDAILT 348 (507)
Q Consensus 277 ~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~i~~~----~~--~~~~L~~L~l~~~~l~~~~~~~~~ 348 (507)
|.+..+|..+... ++|+.|++++|.+...++. +. .+++|++|++++|.+..++...+.
T Consensus 629 --------------N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~ 694 (876)
T 4ecn_A 629 --------------NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694 (876)
T ss_dssp --------------SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHH
T ss_pred --------------CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHc
Confidence 4445555544443 3488999999887663322 22 345899999999999988888888
Q ss_pred cCCCCCEEEccCCCCCCCCccccCCC-------CCceEEEccCcccCCCCCCCCC--CCCcCcEEEcccccCcccccchh
Q 010567 349 SLSSLSCLKLDNNPLRQVPSDGFKDI-------PMLQILDLSYNIASLPENPPFS--SLPHLQELYLRRMQLREAPTDIL 419 (507)
Q Consensus 349 ~~~~L~~L~l~~~~i~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~ 419 (507)
.+++|+.|++++|.++.++...+... ++|+.|++++|.+.. .+..+. .+++|+.|++++|++..+|..+.
T Consensus 695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~ 773 (876)
T 4ecn_A 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773 (876)
T ss_dssp TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSSCCCGGG
T ss_pred cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCCCCCccchhhh
Confidence 89999999999999998877655433 399999999998884 455555 89999999999999999999999
Q ss_pred ccCCCcEEEcCC------Cccc-cccccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCccHHHHhhh
Q 010567 420 RLQQLRILDLSQ------NSLQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRG 492 (507)
Q Consensus 420 ~~~~L~~L~l~~------~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 492 (507)
.+++|+.|++++ |.+. .+|..+.++++|++|++++|++..+|..+. ++|+.|++++|++..++...|...
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~ 850 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTSVCPY 850 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---SSSCEEECCSCTTCEEECGGGHHH
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc---CCCCEEECCCCCCCccChHHcccc
Confidence 999999999977 5554 678899999999999999999998988753 799999999999999887665543
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.8e-41 Score=348.24 Aligned_cols=383 Identities=18% Similarity=0.223 Sum_probs=258.4
Q ss_pred CCCCCchhhhcccCCCeEEcCCCcCcc------------------CCcccc--CCCCCcEEEcCCCcccccchhhhcCcc
Q 010567 49 QLKELPSSLGRCLNLSDFKASNNCITS------------------LPEDLA--DCSKMSKLDVEGNKLTVLSNNLIASWT 108 (507)
Q Consensus 49 ~l~~~~~~~~~~~~L~~L~l~~~~~~~------------------l~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~ 108 (507)
.++.+|..+.++++|++|++++|.++. +|..+. .+++|+.|++++|.+....+..+.+++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 333488899999999999999999998 999877 999999999999987755456699999
Q ss_pred ccceeecCCcc-cc--cccccccCC-------CcccEEeccCCccccCCC--CCcCCCCCcEEEcCCCCCccCCccccCC
Q 010567 109 MLTELIASKNL-LN--GMPETIGSL-------SRLIRLDLHQNRILSIPS--SISGCCSLAEFYMGNNALSALPAELGKL 176 (507)
Q Consensus 109 ~L~~L~l~~~~-~~--~~~~~~~~~-------~~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~~~~l~~~l~~~ 176 (507)
+|++|++++|. ++ .+|..+..+ ++|+.|++++|.+..+|. .+.++++|+.|++++|.++.+| .++.+
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L 594 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTN 594 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTT
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCC
Confidence 99999999997 76 477655544 499999999999999998 8999999999999999999888 88999
Q ss_pred CCCCEEEcCCCcccccchhhhcc-c-cCeEECCCCCCCCCCccccCCCC--ccEEEccCCccccccccccCCCCHHHHHH
Q 010567 177 SKLGTLDLHSNQLKEYCVEACQL-R-LSVLDLSNNSLSGLPPEIGKMTT--LRKLLLTGNPLRTLRSSLVNGPTPALLKY 252 (507)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~~~~-~-L~~l~l~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
++|+.|++++|++..++...... + |+.|++++|.++.+|..+..++. |+.|++++|.+....+.....
T Consensus 595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~-------- 666 (876)
T 4ecn_A 595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS-------- 666 (876)
T ss_dssp SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC--------
T ss_pred CcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh--------
Confidence 99999999999999887665443 4 99999999999999887776654 999999999875321100000
Q ss_pred HHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCCChhhh-cCCCccEEEcCCCccCcCCccccCCCcCcE
Q 010567 253 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPELSSCASLQT 331 (507)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~ 331 (507)
.......+++.|++++|.+..+|..+. .+++|+.|++++|.+..+|..+.....
T Consensus 667 ----------------------l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~--- 721 (876)
T 4ecn_A 667 ----------------------MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD--- 721 (876)
T ss_dssp ----------------------TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT---
T ss_pred ----------------------hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc---
Confidence 000001244555555555555555443 345555555555555554443221110
Q ss_pred EecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccC--CCCCceEEEccCcccCCCCCCCCCCCCcCcEEEccc-
Q 010567 332 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK--DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR- 408 (507)
Q Consensus 332 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~- 408 (507)
.....+++|+.|++++|.++.++.. +. .+++|+.|++++|.+.+ .+..+..+++|+.|++++
T Consensus 722 -------------~~l~nl~~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 722 -------------GNYKNTYLLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp -------------SCCTTGGGCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred -------------ccccccCCccEEECCCCCCccchHH-hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence 0000112445555555544444432 22 44555555555554444 233444455555555544
Q ss_pred -----ccCc-ccccchhccCCCcEEEcCCCccccccccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCC
Q 010567 409 -----MQLR-EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 482 (507)
Q Consensus 409 -----~~i~-~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 482 (507)
|.+. .+|..+..+++|+.|++++|.+..+|..+. ++|+.|++++|++..+..........+..+.+.+|+..
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 5554 677778888888888888888888887764 68888888888877554322211123444444444443
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.5e-41 Score=343.37 Aligned_cols=359 Identities=20% Similarity=0.282 Sum_probs=256.6
Q ss_pred CCCCCCCchhhhcccCCCeEEcCCCcCcc------------------CCcccc--CCCCCcEEEcCCCcccccchhhhcC
Q 010567 47 SNQLKELPSSLGRCLNLSDFKASNNCITS------------------LPEDLA--DCSKMSKLDVEGNKLTVLSNNLIAS 106 (507)
Q Consensus 47 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~------------------l~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~ 106 (507)
.|+++.+|..+.++++|++|++++|.++. +|..+. ++++|++|++++|.+....+..+.+
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 35666788889999999999999998887 888888 8999999999999877655556889
Q ss_pred ccccceeecCCcc-cc--cccccccCC------CcccEEeccCCccccCCC--CCcCCCCCcEEEcCCCCCc-cCCcccc
Q 010567 107 WTMLTELIASKNL-LN--GMPETIGSL------SRLIRLDLHQNRILSIPS--SISGCCSLAEFYMGNNALS-ALPAELG 174 (507)
Q Consensus 107 ~~~L~~L~l~~~~-~~--~~~~~~~~~------~~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~~~-~l~~~l~ 174 (507)
+++|++|++++|. ++ .+|..++.+ ++|++|++++|.++.+|. .+.++++|++|++++|.++ .+| .++
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 9999999999997 76 477777665 889999999999888888 8889999999999999888 888 788
Q ss_pred CCCCCCEEEcCCCcccccchhhhcc-c-cCeEECCCCCCCCCCccccCCC--CccEEEccCCccccccccccCCCCHHHH
Q 010567 175 KLSKLGTLDLHSNQLKEYCVEACQL-R-LSVLDLSNNSLSGLPPEIGKMT--TLRKLLLTGNPLRTLRSSLVNGPTPALL 250 (507)
Q Consensus 175 ~~~~L~~L~l~~~~~~~~~~~~~~~-~-L~~l~l~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 250 (507)
.+++|++|++++|++..++...... . |++|++++|.++.+|..+..++ +|+.|++++|.+....+..+..
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------ 424 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP------ 424 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT------
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcc------
Confidence 8889999999999888777665443 4 8999999999988888776654 8999999998875422111100
Q ss_pred HHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCcc-ccCCCcC
Q 010567 251 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASL 329 (507)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~~~L 329 (507)
.......+++|+.|++++|.+..+|.. +..+++|
T Consensus 425 ---------------------------------------------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L 459 (636)
T 4eco_A 425 ---------------------------------------------LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459 (636)
T ss_dssp ---------------------------------------------TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred ---------------------------------------------cccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence 000011234555555555555555543 2335555
Q ss_pred cEEecccCcccCCchHHhhcCC-------CCCEEEccCCCCCCCCcccc-CCCCCceEEEccCcccCCCCCCCCCCCCcC
Q 010567 330 QTLILSRNKIKDWPDAILTSLS-------SLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYNIASLPENPPFSSLPHL 401 (507)
Q Consensus 330 ~~L~l~~~~l~~~~~~~~~~~~-------~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 401 (507)
++|++++|.++.++...+.... +|+.|++++|.++.++...+ ..+++|+.|++++|.+.+ .+..+..+++|
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L 538 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence 5555555555544443333222 66666666666665554322 266666666666666665 45555666666
Q ss_pred cEEEcc------cccCc-ccccchhccCCCcEEEcCCCccccccccccCCCCCCeEeCCCCCCCCC
Q 010567 402 QELYLR------RMQLR-EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 460 (507)
Q Consensus 402 ~~L~l~------~~~i~-~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~ 460 (507)
+.|+++ +|++. .+|..+..+++|++|++++|.++.+|..+. ++|++|++++|++..+
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCccc
Confidence 666663 45544 677788888888888888888888887765 7888888888877643
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.2e-41 Score=351.75 Aligned_cols=433 Identities=24% Similarity=0.260 Sum_probs=263.0
Q ss_pred ccCCCCEEEcCCCccccc-CccccCCCcccEEeCCCCC-CCCC-chhhhcccCCCeEEcCCCcCccC-CccccCCCCCcE
Q 010567 13 RLHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQ-LKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSK 88 (507)
Q Consensus 13 ~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~-l~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~ 88 (507)
-.++|++|++++|.+..+ +..|..+++|++|++++|. ...+ |.++.++++|++|++++|.+..+ |..|..+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 346788888888888765 6678888888888888884 4455 56788888888888888888865 677888888888
Q ss_pred EEcCCCcccc--cchhhhcCccccceeecCCccccccc--ccccCCCcccEEeccCCccccC-CCCCcCC--CCCcEEEc
Q 010567 89 LDVEGNKLTV--LSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSI-PSSISGC--CSLAEFYM 161 (507)
Q Consensus 89 L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~--~~L~~L~l 161 (507)
|++++|.+++ ....++.++++|++|++++|.+..++ ..+..+++|++|++++|.+... +..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 8888888875 23334778888888888888886543 4678888888888888877643 4455555 67788888
Q ss_pred CCCCCc-cCCccccCCCC------CCEEEcCCCcccccch-h--------------------------------------
Q 010567 162 GNNALS-ALPAELGKLSK------LGTLDLHSNQLKEYCV-E-------------------------------------- 195 (507)
Q Consensus 162 ~~~~~~-~l~~~l~~~~~------L~~L~l~~~~~~~~~~-~-------------------------------------- 195 (507)
++|.+. ..+..+..+.+ |+.|++++|.+..... .
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 877766 33444444433 7778777775431100 0
Q ss_pred -hhccccCeEECCCCCCCCC-CccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhh
Q 010567 196 -ACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 273 (507)
Q Consensus 196 -~~~~~L~~l~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (507)
.....++.|++++|.+.++ +..+..+++|+.|++++|.++.+....+.+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~----------------------------- 312 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG----------------------------- 312 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT-----------------------------
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC-----------------------------
Confidence 0012478888888877773 455777888888888888776554332221
Q ss_pred hhhhccccccceEEecCCCCCCC-ChhhhcCCCccEEEcCCCccCcCCc-cccCCCcCcEEecccCcccCCchHHhhcCC
Q 010567 274 TMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLS 351 (507)
Q Consensus 274 ~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 351 (507)
..+++.|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|++|++++|.++.+.. ++
T Consensus 313 ------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~ 381 (844)
T 3j0a_A 313 ------LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IP 381 (844)
T ss_dssp ------CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----CC
T ss_pred ------CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-----CC
Confidence 23556666666665543 3445556666666666666655543 25556666666666665554321 33
Q ss_pred CCCEEEccCCCCCCCCcc---------------------ccCCCCCceEEEccCcccCCCCCC-CCCCCCcCcEEEcccc
Q 010567 352 SLSCLKLDNNPLRQVPSD---------------------GFKDIPMLQILDLSYNIASLPENP-PFSSLPHLQELYLRRM 409 (507)
Q Consensus 352 ~L~~L~l~~~~i~~~~~~---------------------~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~ 409 (507)
+|+.+++++|.++.++.. .+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|
T Consensus 382 ~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp SCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred CcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 333333333333322211 123455666666666655443221 2334555555555555
Q ss_pred cCccc------ccchhccCCCcEEEcCCCcccccc-ccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCC
Q 010567 410 QLREA------PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 482 (507)
Q Consensus 410 ~i~~l------~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 482 (507)
.++.. +..+..+++|+.|++++|.++.+| ..+.++++|++|++++|+++.+++.... ++|+.|++++|+++
T Consensus 462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLL 539 (844)
T ss_dssp CCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCC
T ss_pred ccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCC
Confidence 55421 123444555555555555555543 3345555555555555555555544332 45555555555555
Q ss_pred CccHH
Q 010567 483 SIRRT 487 (507)
Q Consensus 483 ~~~~~ 487 (507)
.+.++
T Consensus 540 ~~~~~ 544 (844)
T 3j0a_A 540 APNPD 544 (844)
T ss_dssp CCCSC
T ss_pred CCChh
Confidence 44443
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8e-41 Score=334.79 Aligned_cols=423 Identities=22% Similarity=0.205 Sum_probs=274.8
Q ss_pred CEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCc-hhhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEEcCCCc
Q 010567 18 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNK 95 (507)
Q Consensus 18 ~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~ 95 (507)
++++++++.++.+|..+. ++|++|++++|.++.++ ..+.++++|++|++++|.++.+ |..|..+++|++|++++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 456666666666665543 66666666666666554 4566666666666666666654 4566666666666666666
Q ss_pred ccccchhhhcCccccceeecCCccccc--ccccccCCCcccEEeccCCccccCCCCCcCCCCC--cEEEcCCCCC--c-c
Q 010567 96 LTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL--AEFYMGNNAL--S-A 168 (507)
Q Consensus 96 l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L--~~L~l~~~~~--~-~ 168 (507)
++.++.. .+++|++|++++|.+.. +|..++.+++|++|++++|.+.. ..+..+++| ++|++++|.+ . .
T Consensus 81 l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 81 LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred eeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccc
Confidence 6665543 56666666666666654 34566666666666666666554 234455555 6666666655 2 2
Q ss_pred CCccccC--------------------------CCCCCEEEcCCCc-------ccccchhhhc-cccCeEECCCCCCCC-
Q 010567 169 LPAELGK--------------------------LSKLGTLDLHSNQ-------LKEYCVEACQ-LRLSVLDLSNNSLSG- 213 (507)
Q Consensus 169 l~~~l~~--------------------------~~~L~~L~l~~~~-------~~~~~~~~~~-~~L~~l~l~~~~~~~- 213 (507)
.|..+.. +++|+.+++++|. +....+.... ..|+.++++++.+.+
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 3333333 3344444444432 1111111111 114444444333322
Q ss_pred ----CCccccCCCCccEEEccCCccc-cccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEe
Q 010567 214 ----LPPEIGKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 288 (507)
Q Consensus 214 ----~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 288 (507)
++... ..++|+.|++++|.++ .++...+.. .......++.+++
T Consensus 236 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~-------------------------------~~~~l~~L~~l~l 283 (520)
T 2z7x_B 236 SFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDY-------------------------------SGTSLKALSIHQV 283 (520)
T ss_dssp HHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCC-------------------------------CSCCCCEEEEEEE
T ss_pred HHHHHHHHh-hhCcccEEEeecccccCccccchhhc-------------------------------ccccCceeEeccc
Confidence 00000 1234445555444443 222111100 0012345667777
Q ss_pred cCCCCCCCC-hhhhcC---CCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCC
Q 010567 289 EGMNLSAIP-SEIWEA---GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 364 (507)
Q Consensus 289 ~~~~~~~~~-~~~~~~---~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~ 364 (507)
+++.+ .+| ..+... .+++.|++++|.+..++. ...+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 284 ~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 361 (520)
T 2z7x_B 284 VSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361 (520)
T ss_dssp EECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC
T ss_pred cccce-ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC
Confidence 77766 566 344333 678889998888776542 267889999999999999876677788999999999999998
Q ss_pred CCCc--cccCCCCCceEEEccCcccCC-CCCCCCCCCCcCcEEEcccccCc-ccccchhccCCCcEEEcCCCcccccccc
Q 010567 365 QVPS--DGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQSIPEG 440 (507)
Q Consensus 365 ~~~~--~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~l~~l~~~ 440 (507)
+++. ..+..+++|+.|++++|.+.+ .....+..+++|+.|++++|+++ .++..+. ++|+.|++++|+++.+|..
T Consensus 362 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~ 439 (520)
T 2z7x_B 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ 439 (520)
T ss_dssp BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGG
T ss_pred ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchh
Confidence 7543 458899999999999999887 44445788899999999999997 4444433 7999999999999999998
Q ss_pred ccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCC
Q 010567 441 FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 441 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 483 (507)
+.++++|++|++++|+++.+|......+++|+.|++++|+++.
T Consensus 440 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 440 VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 8899999999999999999998744444999999999999875
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-39 Score=339.01 Aligned_cols=456 Identities=22% Similarity=0.258 Sum_probs=297.3
Q ss_pred eecHHhhcccCCCCEEEcCCCc-cccc-CccccCCCcccEEeCCCCCCCCC-chhhhcccCCCeEEcCCCcCcc-CCcc-
Q 010567 5 WFLLYVFDRLHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITS-LPED- 79 (507)
Q Consensus 5 ~~~~~~~~~~~~L~~L~l~~~~-i~~~-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~-l~~~- 79 (507)
...+..|+++++|++|++++|. +..+ |.+|+.+++|++|++++|.+..+ |..+..+++|++|++++|.++. ++..
T Consensus 38 ~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 117 (844)
T 3j0a_A 38 TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117 (844)
T ss_dssp EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCc
Confidence 3456778888899999998884 4466 66788888899999988888855 7788888889999998888874 4443
Q ss_pred -ccCCCCCcEEEcCCCcccccch-hhhcCccccceeecCCcccccc-cccccCC--CcccEEeccCCcccc-CCCCCcCC
Q 010567 80 -LADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGM-PETIGSL--SRLIRLDLHQNRILS-IPSSISGC 153 (507)
Q Consensus 80 -~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~--~~L~~L~l~~~~i~~-l~~~~~~~ 153 (507)
+..+++|++|++++|.+..+.. ..+.++++|++|++++|.+..+ +..+..+ ++|+.|+++.|.+.. .+..+..+
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~ 197 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS
T ss_pred cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhc
Confidence 7888889999988888876543 4588888888888888877543 3444433 455555555555442 22333333
Q ss_pred CC------CcEEEcCCCCCc-cCCcccc------------------------------------C--CCCCCEEEcCCCc
Q 010567 154 CS------LAEFYMGNNALS-ALPAELG------------------------------------K--LSKLGTLDLHSNQ 188 (507)
Q Consensus 154 ~~------L~~L~l~~~~~~-~l~~~l~------------------------------------~--~~~L~~L~l~~~~ 188 (507)
.+ |+.|++++|.++ ..+..+. . .++|+.|++++|.
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence 22 555555544332 1111000 0 1345555555555
Q ss_pred ccccchhhhc--cccCeEECCCCCCCCC-CccccCCCCccEEEccCCccccccccccCCCC-HHHHHHHHhcCCCCCccc
Q 010567 189 LKEYCVEACQ--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT-PALLKYLRSRLPENEDSE 264 (507)
Q Consensus 189 ~~~~~~~~~~--~~L~~l~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (507)
+..+...... ..|+.|++++|.+.++ +..+..+++|+.|++++|.++.+....+.+.. ...+. +.....
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-----L~~N~i-- 350 (844)
T 3j0a_A 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID-----LQKNHI-- 350 (844)
T ss_dssp CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE-----CCSCCC--
T ss_pred ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE-----CCCCCC--
Confidence 4443322211 1255555555555442 23344555555555555544433222211100 00000 000000
Q ss_pred cccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCch
Q 010567 265 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 344 (507)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~ 344 (507)
............+++.|++++|.+..++. +++|+.|++++|.+..+|.. ..+++.+++++|.+.+...
T Consensus 351 -----~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 351 -----AIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDI 418 (844)
T ss_dssp -----CCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTT
T ss_pred -----CccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCch
Confidence 00000001113567777777777766544 66777888888777777643 4568888899888887654
Q ss_pred H-HhhcCCCCCEEEccCCCCCCCCcc-ccCCCCCceEEEccCcccCC-----CCCCCCCCCCcCcEEEcccccCcccccc
Q 010567 345 A-ILTSLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASL-----PENPPFSSLPHLQELYLRRMQLREAPTD 417 (507)
Q Consensus 345 ~-~~~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~i~~l~~~ 417 (507)
. .+..+++|+.|++++|.++..+.. .+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.++..
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh
Confidence 3 346899999999999999876543 45678999999999998863 3445688899999999999999977655
Q ss_pred -hhccCCCcEEEcCCCccccccccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCC
Q 010567 418 -ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 418 -~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 483 (507)
+..+++|+.|++++|.++.+|...-. ++|+.|++++|+++.+++.. + .+|+.+++++|++..
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~--~-~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 499 VFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDV--F-VSLSVLDITHNKFIC 561 (844)
T ss_dssp SSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCC--C-SSCCEEEEEEECCCC
T ss_pred HccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhH--h-CCcCEEEecCCCccc
Confidence 68899999999999999998755433 89999999999999777654 2 689999999998743
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=328.81 Aligned_cols=405 Identities=20% Similarity=0.224 Sum_probs=318.3
Q ss_pred CCCCEEEcCCCcccccC-ccccCCCcccEEeCCCCCCCCC-chhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcC
Q 010567 15 HMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 92 (507)
Q Consensus 15 ~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 92 (507)
++|++|++++|.+..++ ..|..+++|++|++++|.++.+ |..+.++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 78888888888888664 5688888888888888888866 56788888888888888888887766 78888888888
Q ss_pred CCcccccc-hhhhcCccccceeecCCcccccccccccCCCcc--cEEeccCCcc--c-cCCCC-----------------
Q 010567 93 GNKLTVLS-NNLIASWTMLTELIASKNLLNGMPETIGSLSRL--IRLDLHQNRI--L-SIPSS----------------- 149 (507)
Q Consensus 93 ~~~l~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~i--~-~l~~~----------------- 149 (507)
+|+++.++ +..++++++|++|++++|.+.. ..+..+++| +.|++++|.+ . ..|..
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 88887643 3458888888888888887755 244555666 8888888776 2 22333
Q ss_pred ---------CcCCCCCcEEEcCCCC-------CccCCccccCCCCCCEEEcCCCcccc-----cchhhhccccCeEECCC
Q 010567 150 ---------ISGCCSLAEFYMGNNA-------LSALPAELGKLSKLGTLDLHSNQLKE-----YCVEACQLRLSVLDLSN 208 (507)
Q Consensus 150 ---------~~~~~~L~~L~l~~~~-------~~~l~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~L~~l~l~~ 208 (507)
+..+++|+.+++++|. +......+..+++|+.++++++.+.. +.......+|+++++++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 3347778888888775 33222367888999999999987763 22222233699999999
Q ss_pred CCCC-CCCccc-----cCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccc
Q 010567 209 NSLS-GLPPEI-----GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT 282 (507)
Q Consensus 209 ~~~~-~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (507)
|.+. .+|..+ .++++|+.++++++.+ .++.. .+ ... ....+
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~--------~~----------------------~~~--~~~~~ 303 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQS--------YI----------------------YEI--FSNMN 303 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTH--------HH----------------------HHH--HHTCC
T ss_pred ccccCccccchhhcccccCceeEeccccccce-ecchh--------hh----------------------hcc--cccCc
Confidence 9988 488877 8899999999998876 32210 00 000 01236
Q ss_pred cceEEecCCCCCCCChhhhcCCCccEEEcCCCccCc-CCccccCCCcCcEEecccCcccCCch--HHhhcCCCCCEEEcc
Q 010567 283 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLD 359 (507)
Q Consensus 283 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-i~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~ 359 (507)
++.++++++.+..++. ...+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+++. ..+..+++|++|+++
T Consensus 304 L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred eeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 8899999998775542 2468899999999999988 67789999999999999999987543 557899999999999
Q ss_pred CCCCCC-CCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCcccccc
Q 010567 360 NNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP 438 (507)
Q Consensus 360 ~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~ 438 (507)
+|.+++ ++...+..+++|+.|++++|.+++..+..+. ++|+.|++++|+++.+|..+..+++|++|++++|+++.+|
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccC
Confidence 999998 7777788999999999999998765554443 7999999999999999998889999999999999999998
Q ss_pred cc-ccCCCCCCeEeCCCCCCCC
Q 010567 439 EG-FKNLTSLTELDLSDNNISA 459 (507)
Q Consensus 439 ~~-~~~l~~L~~L~l~~~~l~~ 459 (507)
.. +.++++|++|++++|++..
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC
T ss_pred HHHhccCCcccEEECcCCCCcc
Confidence 76 8999999999999999873
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-38 Score=320.56 Aligned_cols=461 Identities=21% Similarity=0.219 Sum_probs=360.3
Q ss_pred cCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCC-chhhhcccCCCeEEcCCCcCccCC-ccccCCCCCcEEEc
Q 010567 14 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 91 (507)
Q Consensus 14 ~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l 91 (507)
|+...+.|.+++.++.+|..+. ++|++|++++|.++.+ |..+.++++|++|++++|.++.++ ..|..+++|++|++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4556667889999999988663 7999999999999966 568999999999999999999765 67999999999999
Q ss_pred CCCcccccchhhhcCccccceeecCCccccc--ccccccCCCcccEEeccCCc-cccCC-CCCcCCCCCcEEEcCCCCCc
Q 010567 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNR-ILSIP-SSISGCCSLAEFYMGNNALS 167 (507)
Q Consensus 92 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~-i~~l~-~~~~~~~~L~~L~l~~~~~~ 167 (507)
++|+++.++...++++++|++|++++|.+.. .+..+..+++|++|++++|. +..++ ..+.++++|++|++++|.++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999999999889999999999999999975 45778999999999999998 56666 57899999999999999998
Q ss_pred c-CCccccCCCCCCEEEcCCCcccccchhhh--ccccCeEECCCCCCCCCC---c-cccCCCCccEEEccCCcccccccc
Q 010567 168 A-LPAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLP---P-EIGKMTTLRKLLLTGNPLRTLRSS 240 (507)
Q Consensus 168 ~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~L~~l~l~~~~~~~~~---~-~l~~l~~L~~L~l~~~~~~~~~~~ 240 (507)
. .|..++.+++|++|+++++.+..++.... ..+|+++++++|.+++.+ . ....+++|+.++++++.++...
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-- 239 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES-- 239 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH--
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH--
Confidence 4 68889999999999999999887666543 234999999999998852 2 2356789999999998764321
Q ss_pred ccCCCCHHHHHHHHhcCCCCCccccccc-------hhhhhhhhhccccccceEEecCCCCCC------CChhhhcCCCcc
Q 010567 241 LVNGPTPALLKYLRSRLPENEDSEASTT-------KEDLITMATRLSVTSKELSLEGMNLSA------IPSEIWEAGEIT 307 (507)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~l~l~~~~~~~------~~~~~~~~~~L~ 307 (507)
+..+.................. .............+++.+.+.++.+.. ++......++++
T Consensus 240 ------~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 240 ------FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp ------HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred ------HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence 1111111111111110000000 000000111223456667766665432 222233457899
Q ss_pred EEEcCCCccCcCCccc-cCCCcCcEEecccCcccCCchH---HhhcCCCCCEEEccCCCCCCCCc--cccCCCCCceEEE
Q 010567 308 KLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDA---ILTSLSSLSCLKLDNNPLRQVPS--DGFKDIPMLQILD 381 (507)
Q Consensus 308 ~L~l~~~~~~~i~~~~-~~~~~L~~L~l~~~~l~~~~~~---~~~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~ 381 (507)
.|++++|.+..+|..+ ..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++++. ..+..+++|+.|+
T Consensus 314 ~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp EEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred EEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 9999999999999876 5799999999999998875432 25778999999999999988764 4588899999999
Q ss_pred ccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCccccccccccCCCCCCeEeCCCCCCCCCC
Q 010567 382 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 461 (507)
Q Consensus 382 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~ 461 (507)
+++|.+.. .+..+..+++|++|++++|+++.++..+. ++|++|++++|++++++ .++++|++|++++|+++.+|
T Consensus 394 Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip 467 (549)
T 2z81_A 394 ISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLP 467 (549)
T ss_dssp CTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCC
T ss_pred CCCCCCcc-CChhhcccccccEEECCCCCcccccchhc--CCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCC
Confidence 99998884 45677889999999999999998876543 68999999999998775 57899999999999999998
Q ss_pred CcccCCCccCceEeccCCCCCCccHHHHhhh
Q 010567 462 PELGLLEPSLQALRLDGNPLRSIRRTILDRG 492 (507)
Q Consensus 462 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 492 (507)
+. .. +++|+.|++++|+++.+.+..|...
T Consensus 468 ~~-~~-l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 468 DA-SL-FPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp CG-GG-CTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred Cc-cc-CccCCEEecCCCccCCcCHHHHhcC
Confidence 73 33 4999999999999999988877654
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.4e-38 Score=316.23 Aligned_cols=428 Identities=19% Similarity=0.175 Sum_probs=307.4
Q ss_pred ccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCc-hhhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEE
Q 010567 13 RLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLD 90 (507)
Q Consensus 13 ~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~ 90 (507)
.+...++++++++.++.+|..+. ++|++|++++|.++.++ ..+.++++|++|++++|.++.+ |..|..+++|++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 44556889999999988887653 78999999999998776 5788899999999999998876 56788899999999
Q ss_pred cCCCcccccchhhhcCccccceeecCCccccccc--ccccCCCcccEEeccCCccccCCCCCcCCCCC--cEEEcCCCCC
Q 010567 91 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSIPSSISGCCSL--AEFYMGNNAL 166 (507)
Q Consensus 91 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L--~~L~l~~~~~ 166 (507)
+++|+++.++.. .+++|++|++++|.+..++ ..+..+++|++|++++|.+.. ..+..+++| ++|++++|.+
T Consensus 107 Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 107 VSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred CCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence 999999888765 7899999999999987754 678889999999999988775 245556666 9999988877
Q ss_pred --c-cCCccccCC--------------------------CCCCEEEcCCCccc-----ccchhhh-ccccCeEECCCCCC
Q 010567 167 --S-ALPAELGKL--------------------------SKLGTLDLHSNQLK-----EYCVEAC-QLRLSVLDLSNNSL 211 (507)
Q Consensus 167 --~-~l~~~l~~~--------------------------~~L~~L~l~~~~~~-----~~~~~~~-~~~L~~l~l~~~~~ 211 (507)
+ ..|..+..+ ++|+.+++++|+.. ....... ...++.++++++.+
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 4 334444433 33444444443210 0000000 11133333333322
Q ss_pred CC-----CCccccCCCCccEEEccCCccc-cccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccce
Q 010567 212 SG-----LPPEIGKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 285 (507)
Q Consensus 212 ~~-----~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (507)
.+ ++..+ ...+|+.|++++|.++ .++...+... ......+..
T Consensus 262 ~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~-------------------------------~~~L~~L~~ 309 (562)
T 3a79_B 262 TWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYS-------------------------------ETALKSLMI 309 (562)
T ss_dssp CHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCC-------------------------------SCSCCEEEE
T ss_pred cHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcc-------------------------------cccchheeh
Confidence 22 11211 2348899999988775 3333222110 000122333
Q ss_pred EEecCCCCCCCCh-hhh---cCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCC
Q 010567 286 LSLEGMNLSAIPS-EIW---EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 361 (507)
Q Consensus 286 l~l~~~~~~~~~~-~~~---~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 361 (507)
+++..+.+ .+|. ++. ...+++.|++++|.+..++. ...+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 310 ~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 387 (562)
T 3a79_B 310 EHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387 (562)
T ss_dssp EEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS
T ss_pred hhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC
Confidence 34444444 4552 222 24679999999998766541 267889999999999999877777788999999999999
Q ss_pred CCCCCCc--cccCCCCCceEEEccCcccCC-CCCCCCCCCCcCcEEEcccccCc-ccccchhccCCCcEEEcCCCccccc
Q 010567 362 PLRQVPS--DGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQSI 437 (507)
Q Consensus 362 ~i~~~~~--~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~l~~l 437 (507)
.+++++. ..+..+++|+.|++++|.+.+ .....+..+++|+.|++++|+++ .++..+. ++|+.|++++|+++++
T Consensus 388 ~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i 465 (562)
T 3a79_B 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI 465 (562)
T ss_dssp CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC
T ss_pred CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc
Confidence 9988764 458899999999999999887 45556788999999999999997 3433332 6999999999999999
Q ss_pred cccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCC
Q 010567 438 PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 438 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 483 (507)
|..+.++++|++|++++|+++.+|+.....+++|+.|++++|++..
T Consensus 466 p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred ChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 9888899999999999999999998844444999999999999864
No 22
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.3e-38 Score=306.04 Aligned_cols=392 Identities=22% Similarity=0.269 Sum_probs=192.4
Q ss_pred ccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCC-CCchhhhcccC-------------CCeEEcCCCcCccCCc
Q 010567 13 RLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLN-------------LSDFKASNNCITSLPE 78 (507)
Q Consensus 13 ~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~-------------L~~L~l~~~~~~~l~~ 78 (507)
+.++|+.|+++++.+..+|.+++.+++|++|++++|.+. .+|..++.+.+ +++|++++|.++.+|.
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 357777777777777777777777777777777777665 56666665554 3667777766666654
Q ss_pred cccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcE
Q 010567 79 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAE 158 (507)
Q Consensus 79 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~ 158 (507)
. .++|++|++++|.++.++. ..++|++|++++|.+..++.. .++|++|++++|.++.+| .+.++++|++
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred C---cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 2 3566667776666666543 235666666666666555432 146666666666666665 4666666666
Q ss_pred EEcCCCCCccCCccccCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCcccccc
Q 010567 159 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 238 (507)
Q Consensus 159 L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 238 (507)
|++++|.++.+|... .+|++|++++|++..++......+|+++++++|.++++|... ++|+.|++++|.++.++
T Consensus 158 L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP 231 (454)
T ss_dssp EECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC
T ss_pred EECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc
Confidence 666666666555432 366666666666665543222223666666666665554322 35666666666554332
Q ss_pred ccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCc
Q 010567 239 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 318 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 318 (507)
. + ....+++.++++++.+..+|.. .++|+.|++++|.+.+
T Consensus 232 ~--~-----------------------------------~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 232 E--L-----------------------------------QNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp C--C-----------------------------------TTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC
T ss_pred c--c-----------------------------------CCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc
Confidence 1 0 0113455666666655555432 2566666666666666
Q ss_pred CCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCC
Q 010567 319 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 398 (507)
Q Consensus 319 i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 398 (507)
+|.. +++|++|++++|.+.+++.. .++|+.|++++|.+++++. ..++|+.|++++|.+.+... .+
T Consensus 272 l~~~---~~~L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~----~~ 336 (454)
T 1jl5_A 272 LPEL---PQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPA----LP 336 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSEESCC----CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCCCC----CC
T ss_pred cCcc---cCcCCEEECcCCccCcccCc----CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCccccccc----cC
Confidence 6543 25666667766666553321 2566677777666655432 12466777777666655221 24
Q ss_pred CcCcEEEcccccCcccccchhccCCCcEEEcCCCcccc---ccccccCC-------------CCCCeEeCCCCCCCCCCC
Q 010567 399 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS---IPEGFKNL-------------TSLTELDLSDNNISALPP 462 (507)
Q Consensus 399 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~---l~~~~~~l-------------~~L~~L~l~~~~l~~~~~ 462 (507)
++|+.|++++|.++.+|. .+++|++|++++|.+++ +|..+.++ ++|++|++++|.++.++.
T Consensus 337 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~ 413 (454)
T 1jl5_A 337 PRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD 413 (454)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------
T ss_pred CcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc
Confidence 667777777776666665 35667777777776664 34555555 667777777777664432
Q ss_pred cccCCCccCceEeccCCCCCC
Q 010567 463 ELGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 463 ~~~~~~~~L~~L~l~~n~~~~ 483 (507)
.+++++.|.+.+|.+..
T Consensus 414 ----iP~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 414 ----IPESVEDLRMNSERVVD 430 (454)
T ss_dssp ---------------------
T ss_pred ----chhhHhheeCcCcccCC
Confidence 23456666666666543
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.7e-37 Score=314.72 Aligned_cols=451 Identities=23% Similarity=0.240 Sum_probs=320.1
Q ss_pred CCCCEEEcCCCcccccC-ccccCCCcccEEeCCCCCCCCCch-hhhcccCCCeEEcCCCcCccCCc-cccCCCCCcEEEc
Q 010567 15 HMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDV 91 (507)
Q Consensus 15 ~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l 91 (507)
+++++||+++|.|+.++ .+|+.+++|++|++++|+++.++. +|.++++|++|++++|.++.+|. .|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 36888888888888775 468888888888888888887754 67888888888888888887764 5788888888888
Q ss_pred CCCcccccchhhhcCccccceeecCCccccc--ccccccCCCcccEEeccCCccccCC-CCCcCCCC----CcEEEcCCC
Q 010567 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIP-SSISGCCS----LAEFYMGNN 164 (507)
Q Consensus 92 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~----L~~L~l~~~ 164 (507)
++|+++.++...|+++++|++|++++|.+.. +|..+..+++|++|++++|.++.++ ..+..+.+ ...++++.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 8888888887778888888888888888764 4567777888888888888877543 23333322 234556655
Q ss_pred CCccCCccccCCCCCCEEEcCCCccc-------------------------------c----------------------
Q 010567 165 ALSALPAELGKLSKLGTLDLHSNQLK-------------------------------E---------------------- 191 (507)
Q Consensus 165 ~~~~l~~~l~~~~~L~~L~l~~~~~~-------------------------------~---------------------- 191 (507)
.++.++........++.+++.++... .
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 55543332222222333333222100 0
Q ss_pred ------cchh-hhccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccc
Q 010567 192 ------YCVE-ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 264 (507)
Q Consensus 192 ------~~~~-~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (507)
.... .....++.+.+.++.+..+. .+....+++.+++.++.+..+......... ...
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~---------------~l~ 355 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLK---------------RLT 355 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCC---------------EEE
T ss_pred cccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCcccchhhh---------------hcc
Confidence 0000 00112455555555444432 355667788888888776554432211100 000
Q ss_pred cccchhhhhhhhhccccccceEEecCCCCC---CCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccC
Q 010567 265 ASTTKEDLITMATRLSVTSKELSLEGMNLS---AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 341 (507)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~ 341 (507)
....... .........+++.++++.+.+. ..+.......+++.+++..+....++..+..+++|+.+++.++....
T Consensus 356 l~~n~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 356 FTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp EESCCSC-CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES
T ss_pred cccccCC-CCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccc
Confidence 0000000 0000112356788888888765 45666777889999999999888888788899999999999887655
Q ss_pred C-chHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCccc-CCCCCCCCCCCCcCcEEEcccccCccc-ccch
Q 010567 342 W-PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA-SLPENPPFSSLPHLQELYLRRMQLREA-PTDI 418 (507)
Q Consensus 342 ~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~ 418 (507)
. ....+..+++++.++++.|.+.......+..++.|+.|++++|.. ....+..+..+++|+.|++++|+++.+ |..+
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH
Confidence 3 345578899999999999999998888899999999999999864 445677889999999999999999976 5568
Q ss_pred hccCCCcEEEcCCCcccccc-ccccCCCCCCeEeCCCCCCCCCCCc-ccCCCccCceEeccCCCCC
Q 010567 419 LRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPE-LGLLEPSLQALRLDGNPLR 482 (507)
Q Consensus 419 ~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~ 482 (507)
.++++|++|++++|++++++ ..+.++++|++|++++|+++.+++. +..++++|+.|++++|++.
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 89999999999999999885 5689999999999999999977664 4445478999999999986
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-36 Score=297.16 Aligned_cols=348 Identities=22% Similarity=0.343 Sum_probs=206.8
Q ss_pred ccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcC
Q 010567 13 RLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 92 (507)
Q Consensus 13 ~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 92 (507)
.+++++.|+++++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 35667777777776666653 6666777777777777766665 6667777777777777666654 6667777777777
Q ss_pred CCcccccchhhhcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCcc
Q 010567 93 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 172 (507)
Q Consensus 93 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~ 172 (507)
+|.+++++. +.++++|++|++++|.+..++ .+..+++|+.|+++ +.+..++ .+.++++|++|++++|.++.++ .
T Consensus 121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~ 194 (466)
T 1o6v_A 121 NNQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLK-PLANLTTLERLDISSNKVSDIS-V 194 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEEECCSSCCCCCG-G
T ss_pred CCCCCCChH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCch-hhccCCCCCEEECcCCcCCCCh-h
Confidence 776666654 666777777777776666654 35666667766664 2333332 2556666666666666666553 2
Q ss_pred ccCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccccccCCCCHHHHHH
Q 010567 173 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 252 (507)
Q Consensus 173 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
+..+++|++|++++|.+..........+|+.+++++|.+++++ .+..+++|+.|++++|.++
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~----------------- 256 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS----------------- 256 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-----------------
T ss_pred hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccc-----------------
Confidence 5556666666666666555444322333555555555555442 3445555555555555432
Q ss_pred HHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEE
Q 010567 253 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL 332 (507)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L 332 (507)
.++. +..+++|+.|++++|.+.+++. +..+++|++|
T Consensus 257 ------------------------------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 292 (466)
T 1o6v_A 257 ------------------------------------------NLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNL 292 (466)
T ss_dssp ------------------------------------------CCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred ------------------------------------------cchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeE
Confidence 2221 3345566666666666665554 5556666666
Q ss_pred ecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCc
Q 010567 333 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 412 (507)
Q Consensus 333 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 412 (507)
++++|.+.+..+ +..+++|+.|++++|.+++.++ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|++.
T Consensus 293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 666666655544 4556666666666666655544 45566666666666655544 23555666666666666665
Q ss_pred ccccchhccCCCcEEEcCCCcccccc
Q 010567 413 EAPTDILRLQQLRILDLSQNSLQSIP 438 (507)
Q Consensus 413 ~l~~~~~~~~~L~~L~l~~~~l~~l~ 438 (507)
..+. +..+++|+.|++++|.++.+|
T Consensus 367 ~~~~-~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 367 DLTP-LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp BCGG-GTTCTTCCEEECCCEEEECCC
T ss_pred ccch-hhcCCCCCEEeccCCcccCCc
Confidence 4443 555666666666666555443
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-37 Score=301.53 Aligned_cols=373 Identities=25% Similarity=0.296 Sum_probs=280.4
Q ss_pred CCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCc-cCCccccCCCCC-------------cEEEcCCCcccccch
Q 010567 36 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM-------------SKLDVEGNKLTVLSN 101 (507)
Q Consensus 36 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L-------------~~L~l~~~~l~~~~~ 101 (507)
..++|++|+++++.++++|.+++++++|++|++++|.+. .+|..+..+.+| ++|++++|+++.++.
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 468999999999999999999999999999999999887 788888888764 999999999998775
Q ss_pred hhhcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCccccCCCCCCE
Q 010567 102 NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGT 181 (507)
Q Consensus 102 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~ 181 (507)
-.++|++|++++|.++.+|.. .++|+.|++++|.+..++... ++|++|++++|.++.+| .++.+++|++
T Consensus 89 ----~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 89 ----LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp ----CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred ----CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 247999999999999888853 478999999999998876432 79999999999999998 5999999999
Q ss_pred EEcCCCcccccchhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCC
Q 010567 182 LDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 261 (507)
Q Consensus 182 L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (507)
|++++|++..++... .+|+++++++|.++++| .++.+++|+.|++++|.++.++..
T Consensus 158 L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--------------------- 213 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL--------------------- 213 (454)
T ss_dssp EECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---------------------
T ss_pred EECCCCcCcccCCCc--ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---------------------
Confidence 999999999876543 36999999999999987 689999999999999988654321
Q ss_pred ccccccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccC
Q 010567 262 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 341 (507)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~ 341 (507)
..+++.++++++.+..+|. +..+++|+.|++++|.+..+|.. +++|++|++++|.+.+
T Consensus 214 ------------------~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 214 ------------------PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp ------------------CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC
T ss_pred ------------------cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc
Confidence 1368999999999998884 78899999999999999988853 4789999999999988
Q ss_pred CchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhcc
Q 010567 342 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRL 421 (507)
Q Consensus 342 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~ 421 (507)
++. ..++|++|++++|.+++++.. .++|+.|++++|.+.+... ..++|+.|++++|+++.+|.. +
T Consensus 272 l~~----~~~~L~~L~ls~N~l~~l~~~----~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~~---~ 336 (454)
T 1jl5_A 272 LPE----LPQSLTFLDVSENIFSGLSEL----PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL---P 336 (454)
T ss_dssp CCC----CCTTCCEEECCSSCCSEESCC----CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSCCCCC---C
T ss_pred cCc----ccCcCCEEECcCCccCcccCc----CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccccccc---C
Confidence 654 248999999999999886532 3789999999998776321 125899999999999988765 5
Q ss_pred CCCcEEEcCCCccccccccccCCCCCCeEeCCCCCCCC---CCCcccCC------------CccCceEeccCCCCCC
Q 010567 422 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA---LPPELGLL------------EPSLQALRLDGNPLRS 483 (507)
Q Consensus 422 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~---~~~~~~~~------------~~~L~~L~l~~n~~~~ 483 (507)
++|++|++++|.++++|. .+++|++|++++|+++. +|..+..+ +++|+.|++++|+++.
T Consensus 337 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 337 PRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 899999999999999987 57999999999999876 44544322 2689999999999985
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.1e-36 Score=295.73 Aligned_cols=351 Identities=28% Similarity=0.435 Sum_probs=281.3
Q ss_pred CCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcCCCcccccchhhhcCccccceeec
Q 010567 36 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 115 (507)
Q Consensus 36 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 115 (507)
.+++++.|+++++.+..+|. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++. +.++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 35678888888888888875 7778888899998888888765 8888888999888888887776 888888888888
Q ss_pred CCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCcccccchh
Q 010567 116 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 195 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~ 195 (507)
++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++ .+..++. +..+++|++|++++|.+..++..
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l 195 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNKVSDISVL 195 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCCcCCCChhh
Confidence 8888877765 778888888888888887765 477788888888863 4444433 77788888888888887766543
Q ss_pred hhccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhh
Q 010567 196 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 275 (507)
Q Consensus 196 ~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (507)
....+|+++++++|.+.++++ ++.+++|+.|++++|.++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~---------------------------------------- 234 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK---------------------------------------- 234 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC----------------------------------------
T ss_pred ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc----------------------------------------
Confidence 333447777777777776544 566777777777766542
Q ss_pred hhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCE
Q 010567 276 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 355 (507)
Q Consensus 276 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 355 (507)
.+ ..+..+++|+.|++++|.+..++. +..+++|++|++++|.+.+.++ +..+++|+.
T Consensus 235 -------------------~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 235 -------------------DI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTN 291 (466)
T ss_dssp -------------------CC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred -------------------cc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence 22 234567899999999999888765 7889999999999999988766 678999999
Q ss_pred EEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCccc
Q 010567 356 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 435 (507)
Q Consensus 356 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~ 435 (507)
|++++|.++++++ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++
T Consensus 292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccC
Confidence 9999999988765 7889999999999998887655 778899999999999998874 6788899999999999998
Q ss_pred cccccccCCCCCCeEeCCCCCCCCCCCcc
Q 010567 436 SIPEGFKNLTSLTELDLSDNNISALPPEL 464 (507)
Q Consensus 436 ~l~~~~~~l~~L~~L~l~~~~l~~~~~~~ 464 (507)
.++. +.++++|++|++++|+++.+|...
T Consensus 367 ~~~~-~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 367 DLTP-LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp BCGG-GTTCTTCCEEECCCEEEECCCBCC
T ss_pred ccch-hhcCCCCCEEeccCCcccCCchhh
Confidence 7755 889999999999999888766543
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6e-36 Score=294.53 Aligned_cols=370 Identities=23% Similarity=0.281 Sum_probs=236.8
Q ss_pred cEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEEcCCCccc-ccchhhhcCccccceeecCCc
Q 010567 41 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKN 118 (507)
Q Consensus 41 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~ 118 (507)
+.+++++++++.+|. +. ++|++|++++|.++.+ +..+..+++|++|++++|.+. .++...|.++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 456666667776665 22 5677777777777654 556777777777777777665 555556777777777777777
Q ss_pred ccccc-cccccCCCcccEEeccCCcccc-CCC--CCcCCCCCcEEEcCCCCCccC-Ccc-ccCCCCCCEEEcCCCccccc
Q 010567 119 LLNGM-PETIGSLSRLIRLDLHQNRILS-IPS--SISGCCSLAEFYMGNNALSAL-PAE-LGKLSKLGTLDLHSNQLKEY 192 (507)
Q Consensus 119 ~~~~~-~~~~~~~~~L~~L~l~~~~i~~-l~~--~~~~~~~L~~L~l~~~~~~~l-~~~-l~~~~~L~~L~l~~~~~~~~ 192 (507)
.+..+ |..+..+++|++|++++|.+.. .+. .+..+++|++|++++|.++.+ |.. +..+++|++|++++|++...
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 76554 4566777777777777777663 222 366677777777777777755 433 66777777777777776654
Q ss_pred chhhhc----cccCeEECCCCCCCCCCcc---------ccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCC
Q 010567 193 CVEACQ----LRLSVLDLSNNSLSGLPPE---------IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 259 (507)
Q Consensus 193 ~~~~~~----~~L~~l~l~~~~~~~~~~~---------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (507)
...... ..++.++++++.+.+++.. +..+++|+.|++++|.++..
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---------------------- 227 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES---------------------- 227 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH----------------------
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc----------------------
Confidence 332211 2366666666666654321 22445666777766655321
Q ss_pred CCccccccchhhhhhhhhccccccceEEecCCCCCCCChhhh---cCCCccEEEcCCCccCcCCccccCCCcCcEEeccc
Q 010567 260 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW---EAGEITKLDLSRNSIQELPPELSSCASLQTLILSR 336 (507)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~ 336 (507)
.+..+. ..++++.|+++++..........
T Consensus 228 ------------------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------ 259 (455)
T 3v47_A 228 ------------------------------------MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT------------ 259 (455)
T ss_dssp ------------------------------------HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC------------
T ss_pred ------------------------------------chhhhhccccccceeeEeeccccccccccchh------------
Confidence 111111 12456666666654332111111
Q ss_pred CcccCCchHHhh--cCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCccc
Q 010567 337 NKIKDWPDAILT--SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA 414 (507)
Q Consensus 337 ~~l~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 414 (507)
.+.+.....+. ..++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+
T Consensus 260 -~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 260 -NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp -SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred -hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence 11111111111 236777777777777777666677777788888877777777677777778888888888887755
Q ss_pred -ccchhccCCCcEEEcCCCccccc-cccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCc
Q 010567 415 -PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 484 (507)
Q Consensus 415 -~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 484 (507)
+..+..+++|++|++++|.++.+ |..+.++++|++|++++|+++.+++.....+++|+.|++++|+++.-
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 44567778888888888888766 66778888888888888888877776655557888888888887543
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.6e-36 Score=302.04 Aligned_cols=436 Identities=20% Similarity=0.178 Sum_probs=321.0
Q ss_pred CCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCC-ccccCCCCCcEEEcCCCcccccchhhhcCccccceee
Q 010567 36 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 114 (507)
Q Consensus 36 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 114 (507)
.+...++++++++.++.+|..+. ++|++|++++|.++.++ ..|..+++|++|++++|+++.+...+|.++++|++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 45566899999999999998665 79999999999999886 5899999999999999999999888899999999999
Q ss_pred cCCcccccccccccCCCcccEEeccCCccccCC--CCCcCCCCCcEEEcCCCCCccCCccccCCCCC--CEEEcCCCcc-
Q 010567 115 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSALPAELGKLSKL--GTLDLHSNQL- 189 (507)
Q Consensus 115 l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~--~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L--~~L~l~~~~~- 189 (507)
+++|.++.+|.. .+++|++|++++|.+..++ ..+.++++|++|++++|.++.. .+..+++| +++++++|.+
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCC
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccccc
Confidence 999999999876 8999999999999999764 6899999999999999988753 34555566 9999999988
Q ss_pred -cccchh-hhccc--cCeEECCCCCCCC-CCc-cccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCc-
Q 010567 190 -KEYCVE-ACQLR--LSVLDLSNNSLSG-LPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED- 262 (507)
Q Consensus 190 -~~~~~~-~~~~~--L~~l~l~~~~~~~-~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 262 (507)
...... ..... .-.+++++|.+.+ ++. .+..+++|+.+++++|..... ........+. .......
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------~l~~~~~~l~-~l~~L~~L 254 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------RLMTFLSELT-RGPTLLNV 254 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------HHHHHHHHHH-SCSSCEEE
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-------hHHHHHHHHh-ccCcceEE
Confidence 433222 11111 2255777777666 322 356788889998888742100 0000011100 0011000
Q ss_pred --cccccchhhhhh-hhhccccccceEEecCCCCC-CCChhh-----hcCCCccEEEcCCCccCcCCcc-cc---CCCcC
Q 010567 263 --SEASTTKEDLIT-MATRLSVTSKELSLEGMNLS-AIPSEI-----WEAGEITKLDLSRNSIQELPPE-LS---SCASL 329 (507)
Q Consensus 263 --~~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~-~~~~~~-----~~~~~L~~L~l~~~~~~~i~~~-~~---~~~~L 329 (507)
............ .......+++.++++++.+. .+|..+ ..++.|+.+++..+.+ .+|.. +. ...+|
T Consensus 255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCC
T ss_pred EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcc
Confidence 000000000000 00112237888888888776 677766 4455555555555555 45521 11 22579
Q ss_pred cEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCC--CCCCCCCCcCcEEEcc
Q 010567 330 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE--NPPFSSLPHLQELYLR 407 (507)
Q Consensus 330 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~ 407 (507)
++|++++|.+..... ...+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.. +..+..+++|+.|+++
T Consensus 334 ~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 334 KMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp SEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred eEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 999999998866542 257899999999999999877777899999999999999888743 3568899999999999
Q ss_pred cccCcc-cccc-hhccCCCcEEEcCCCccc-cccccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCc
Q 010567 408 RMQLRE-APTD-ILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 484 (507)
Q Consensus 408 ~~~i~~-l~~~-~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 484 (507)
+|.+.. +|.. +..+++|+.|++++|.++ .+|..+. ++|++|++++|+++.+|+.++.+ ++|+.|++++|+++.+
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l-~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHL-QALQELNVASNQLKSV 488 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSS-CCCSEEECCSSCCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCC-CCCCEEECCCCCCCCC
Confidence 999996 8765 677899999999999987 4454443 79999999999999999988855 9999999999999999
Q ss_pred cHHHHhh
Q 010567 485 RRTILDR 491 (507)
Q Consensus 485 ~~~~~~~ 491 (507)
++.+|..
T Consensus 489 ~~~~~~~ 495 (562)
T 3a79_B 489 PDGVFDR 495 (562)
T ss_dssp CTTSTTT
T ss_pred CHHHHhc
Confidence 9875543
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.8e-35 Score=301.60 Aligned_cols=469 Identities=24% Similarity=0.242 Sum_probs=264.9
Q ss_pred EEEcCCCcccccCccccCCCcccEEeCCCCCCCCCch-hhhcccCCCeEEcCCCcCccCCc-cccCCCCCcEEEcCCCcc
Q 010567 19 SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKL 96 (507)
Q Consensus 19 ~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l 96 (507)
+.+-++.+++.+|..+. +++++|++++|.++.+|. +|.++++|++|++++|.++.++. +|.++++|++|++++|++
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 33444444555554331 245666666666665543 45566666666666666665533 455566666666666666
Q ss_pred cccchhhhcCccccceeecCCcccccccc-cccCCCcccEEeccCCcccc--CCCCCcCCCCCcEEEcCCCCCccCC-cc
Q 010567 97 TVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAEFYMGNNALSALP-AE 172 (507)
Q Consensus 97 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~l~~~~~~~l~-~~ 172 (507)
+.++..+|.++++|++|++++|.++.++. .++.+++|++|++++|.+.. .|..+..+++|++|++++|.++.++ ..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 66655556666666666666666655543 35556666666666665553 3444555666666666666555432 22
Q ss_pred ccCCCC----CCEEEcCCCcccccchhhhccc-cCeEECCCCCCCC--CCccccCCCCccEEEccCCcccc------ccc
Q 010567 173 LGKLSK----LGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRT------LRS 239 (507)
Q Consensus 173 l~~~~~----L~~L~l~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~------~~~ 239 (507)
+..+.+ ...++++.+.+..++....... ++.+++.++.... .+..+..+..++...+....... ...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 322222 2345555555554443332222 4444444442221 11123333333333322111000 000
Q ss_pred cccC---------------CCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCCCh------
Q 010567 240 SLVN---------------GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS------ 298 (507)
Q Consensus 240 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------ 298 (507)
..+. .............................. .......+++.+++.++.+..++.
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L 351 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSL 351 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCBCTTC
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcccchhh
Confidence 0000 000000000000000000000000000000 001122345566665554443322
Q ss_pred --------------hhhcCCCccEEEcCCCccCc---CCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCC
Q 010567 299 --------------EIWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 361 (507)
Q Consensus 299 --------------~~~~~~~L~~L~l~~~~~~~---i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 361 (507)
....+++|+.++++.+.+.. .+..+....+|+++++..+........ +..+++|+.+++.++
T Consensus 352 ~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 352 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 430 (635)
T ss_dssp CEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC-CTTCTTCCEEECTTS
T ss_pred hhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc-ccccccccchhhhhc
Confidence 11234566666666665443 233344556666666666655443332 456778888888776
Q ss_pred CCCCC-CccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCc--ccccchhccCCCcEEEcCCCccccc-
Q 010567 362 PLRQV-PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNSLQSI- 437 (507)
Q Consensus 362 ~i~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~l~~l- 437 (507)
+.... +...+..+++++.++++.|.+....+..+..+++|+.|++++|.+. ..|..+..+++|++|++++|+++++
T Consensus 431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~ 510 (635)
T 4g8a_A 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510 (635)
T ss_dssp EEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC
Confidence 65543 3355788899999999999888888888899999999999999754 4667788999999999999999987
Q ss_pred cccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCccHHHHhh
Q 010567 438 PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 491 (507)
Q Consensus 438 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 491 (507)
|..+.++++|++|++++|+++.+++..+..+++|+.|++++|+++.+.+..|..
T Consensus 511 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 677999999999999999999888766655699999999999999998877654
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7e-35 Score=286.90 Aligned_cols=366 Identities=23% Similarity=0.281 Sum_probs=235.2
Q ss_pred CEEEcCCCcccccCccccCCCcccEEeCCCCCCCCC-chhhhcccCCCeEEcCCCcCc-cC-CccccCCCCCcEEEcCCC
Q 010567 18 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCIT-SL-PEDLADCSKMSKLDVEGN 94 (507)
Q Consensus 18 ~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~-~l-~~~~~~~~~L~~L~l~~~ 94 (507)
+.++.+++.+..+|. + .++|++|++++|.++.+ |..+.++++|++|++++|.+. .+ +..|..+++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 467777777777776 3 36788888888888865 667888888888888888775 44 456788888888888888
Q ss_pred cccccchhhhcCccccceeecCCccccc-ccc--cccCCCcccEEeccCCccccC-CCC-CcCCCCCcEEEcCCCCCccC
Q 010567 95 KLTVLSNNLIASWTMLTELIASKNLLNG-MPE--TIGSLSRLIRLDLHQNRILSI-PSS-ISGCCSLAEFYMGNNALSAL 169 (507)
Q Consensus 95 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~--~~~~~~~L~~L~l~~~~i~~l-~~~-~~~~~~L~~L~l~~~~~~~l 169 (507)
+++.+....+.++++|++|++++|.+.. ++. .+..+++|++|++++|.+..+ |.. +.++++|++|++++|.++.+
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 8888777778888888888888888764 333 377788888888888888866 443 77888888888888887744
Q ss_pred -CccccCC--CCCCEEEcCCCcccccchhhhc----------cccCeEECCCCCCCC-CCccccC---CCCccEEEccCC
Q 010567 170 -PAELGKL--SKLGTLDLHSNQLKEYCVEACQ----------LRLSVLDLSNNSLSG-LPPEIGK---MTTLRKLLLTGN 232 (507)
Q Consensus 170 -~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~----------~~L~~l~l~~~~~~~-~~~~l~~---l~~L~~L~l~~~ 232 (507)
+..+..+ .+|+.++++++.+..++..... .+|++|++++|.+.+ .+..+.. .++|+.++++++
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 4445544 6788888888887765543221 348899999988876 3333332 378888988887
Q ss_pred ccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCC---CCChhhhcCCCccEE
Q 010567 233 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS---AIPSEIWEAGEITKL 309 (507)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L 309 (507)
....... ....+. .........++|+.|
T Consensus 250 ~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~~~~L~~L 280 (455)
T 3v47_A 250 YNMGSSF-------------------------------------------------GHTNFKDPDNFTFKGLEASGVKTC 280 (455)
T ss_dssp TTTSCCT-------------------------------------------------TCCSSCCCCTTTTGGGTTSCCCEE
T ss_pred ccccccc-------------------------------------------------chhhhccCcccccccccccCceEE
Confidence 5421100 000000 000011123456666
Q ss_pred EcCCCccCcC-CccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccC
Q 010567 310 DLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 388 (507)
Q Consensus 310 ~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~ 388 (507)
++++|.+.++ |..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++++++..+..+++|+.|++++|.+.
T Consensus 281 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred EecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 6666665553 334555666666666666666555555555666666666666665555555555555555555555555
Q ss_pred CCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCccc
Q 010567 389 LPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 435 (507)
Q Consensus 389 ~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~ 435 (507)
+..+..+..+++|++|++++|+++.++.. +..+++|+.|++++|.++
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 55455555555555555555555544433 244555555555555444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.5e-33 Score=274.91 Aligned_cols=212 Identities=27% Similarity=0.378 Sum_probs=171.3
Q ss_pred HhhcccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcE
Q 010567 9 YVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 88 (507)
Q Consensus 9 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 88 (507)
..++++++|++|+++++.+..+| .+..+++|++|++++|.++.+| +..+++|++|++++|.++.++ +..+++|++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 35677889999999999888776 5888889999999999888875 778888999999999888874 788889999
Q ss_pred EEcCCCcccccchhhhcCccccceeecCCcccccccccccCCCcccEEeccCCc-cccCCCCCcCCCCCcEEEcCCCCCc
Q 010567 89 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR-ILSIPSSISGCCSLAEFYMGNNALS 167 (507)
Q Consensus 89 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~l~~~~~~~~~L~~L~l~~~~~~ 167 (507)
|++++|+++.++ +..+++|++|++++|.++.++ +..+++|+.|++++|. +..+ .+..+++|++|++++|.++
T Consensus 111 L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 111 LNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCeec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 999998888864 788889999999988887764 6778889999998884 4344 4677888899999988888
Q ss_pred cCCccccCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccc
Q 010567 168 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 237 (507)
Q Consensus 168 ~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 237 (507)
.+| +..+++|+.|++++|++..++ ......|+++++++|.++++| ++.+++|+.|++++|.++.+
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC
T ss_pred eec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCc
Confidence 876 778888888888888888763 222234888888888888876 77888888888888877543
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.8e-33 Score=263.01 Aligned_cols=303 Identities=22% Similarity=0.319 Sum_probs=141.1
Q ss_pred CCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcCCCcccccchhhhcCccccceeecC
Q 010567 37 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 116 (507)
Q Consensus 37 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 116 (507)
+++|++|+++++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+++++. +.++++|++|+++
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLN 118 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECT
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECc
Confidence 3444444444444444432 4444444444444444444433 4444444444444444444321 4444444444444
Q ss_pred CcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCcccccchhh
Q 010567 117 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA 196 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~ 196 (507)
+|.+..++. +..+++|+.|++++|.....+..+..+++|++|++++|.+..++. +..+++|++|++++|.+.+++...
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 196 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLA 196 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGG
T ss_pred CCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccccc
Confidence 444444433 444444444444444333222334444555555555554444432 444455555555555555444422
Q ss_pred hccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhh
Q 010567 197 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 276 (507)
Q Consensus 197 ~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (507)
....|+.+++++|.+.+++. +..+++|+.|++++|.++.++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~-------------------------------------- 237 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS-------------------------------------- 237 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--------------------------------------
T ss_pred CCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCc--------------------------------------
Confidence 22235555555555555433 555555666666555442211
Q ss_pred hccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEE
Q 010567 277 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 356 (507)
Q Consensus 277 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 356 (507)
. +..+++|++|++++|.+.+++ .+..+++|++|++++|.+.+.+ .+..+++|+.|
T Consensus 238 ---------------------~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 292 (347)
T 4fmz_A 238 ---------------------P-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSL 292 (347)
T ss_dssp ---------------------G-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred ---------------------c-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEE
Confidence 1 223344444444444444432 3444455555555555554442 23445555555
Q ss_pred EccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccC
Q 010567 357 KLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL 411 (507)
Q Consensus 357 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 411 (507)
++++|.+++.+...+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.|
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 555555554444445555555555555555544433 44555555555555554
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.1e-33 Score=262.82 Aligned_cols=307 Identities=25% Similarity=0.365 Sum_probs=215.0
Q ss_pred ccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEE
Q 010567 80 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 159 (507)
Q Consensus 80 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L 159 (507)
+..+++|++|+++++.+.+++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 4456677777777777766653 6666777777777776666654 666666666666666665543 35555566666
Q ss_pred EcCCCCCccCCccccCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccc
Q 010567 160 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 239 (507)
Q Consensus 160 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 239 (507)
++++|.++.++. +..+++|++|++++| .....+..+..+++|+.|+++++.+..+
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n----------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~-- 170 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGAN----------------------HNLSDLSPLSNMTGLNYLTVTESKVKDV-- 170 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTC----------------------TTCCCCGGGTTCTTCCEEECCSSCCCCC--
T ss_pred ECcCCcccCchh-hccCCceeEEECCCC----------------------CCcccccchhhCCCCcEEEecCCCcCCc--
Confidence 666555555443 445555555555544 2222233466677777777776654321
Q ss_pred cccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcC
Q 010567 240 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 319 (507)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i 319 (507)
+. +..+++|++|++++|.+.++
T Consensus 171 ---------------------------------------------------------~~-~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 171 ---------------------------------------------------------TP-IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp ---------------------------------------------------------GG-GGGCTTCSEEECTTSCCCCC
T ss_pred ---------------------------------------------------------hh-hccCCCCCEEEccCCccccc
Confidence 11 34566777777777777776
Q ss_pred CccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCC
Q 010567 320 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 399 (507)
Q Consensus 320 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 399 (507)
+. +..+++|+++++++|.+.+... +..+++|++|++++|.++.++. +..+++|+.|++++|.+... ..+..++
T Consensus 193 ~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~ 265 (347)
T 4fmz_A 193 SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT 265 (347)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC
Confidence 65 6777888888888888777655 5778888888888888877765 77888888888888877664 3477888
Q ss_pred cCcEEEcccccCcccccchhccCCCcEEEcCCCccccc-cccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccC
Q 010567 400 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDG 478 (507)
Q Consensus 400 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 478 (507)
+|+.|++++|.++.++ .+..+++|+.|++++|.++.. |..+.++++|++|++++|+++.+++ +..+ ++|+.|++++
T Consensus 266 ~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l-~~L~~L~l~~ 342 (347)
T 4fmz_A 266 KLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASL-SKMDSADFAN 342 (347)
T ss_dssp TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGC-TTCSEESSSC
T ss_pred CcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhh-hccceeehhh
Confidence 9999999999888874 577889999999999998855 5678899999999999999988777 5554 8999999999
Q ss_pred CCCCC
Q 010567 479 NPLRS 483 (507)
Q Consensus 479 n~~~~ 483 (507)
|++++
T Consensus 343 N~i~~ 347 (347)
T 4fmz_A 343 QVIKK 347 (347)
T ss_dssp C----
T ss_pred hcccC
Confidence 98863
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-32 Score=268.46 Aligned_cols=187 Identities=24% Similarity=0.320 Sum_probs=131.6
Q ss_pred cccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcCCCcccccchhhhcCccccce
Q 010567 33 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 112 (507)
Q Consensus 33 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 112 (507)
.++.+++|++|+++++.++.+| .+..+++|++|++++|.++.++ +..+++|++|++++|+++.++ +.++++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCE
Confidence 4566788888888888888776 5777888888888888888774 777888888888888887764 677888888
Q ss_pred eecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCC-CCccCCccccCCCCCCEEEcCCCcccc
Q 010567 113 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN-ALSALPAELGKLSKLGTLDLHSNQLKE 191 (507)
Q Consensus 113 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~-~~~~l~~~l~~~~~L~~L~l~~~~~~~ 191 (507)
|++++|.++.++ +..+++|++|++++|.++.++ +..+++|++|++++| .+..+ .+..+++|++|++++|+++.
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 888888777764 667778888888888777663 667777777777777 34444 35666777777777777666
Q ss_pred cchhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCcc
Q 010567 192 YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 234 (507)
Q Consensus 192 ~~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 234 (507)
++ ......|+.+++++|.+++++ ++.+++|+.|++++|.+
T Consensus 185 l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 185 LD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp CC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred ec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcc
Confidence 54 112223666666666666552 55556666666665554
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.9e-32 Score=266.13 Aligned_cols=192 Identities=20% Similarity=0.290 Sum_probs=128.4
Q ss_pred ccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCc
Q 010567 40 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 118 (507)
Q Consensus 40 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 118 (507)
-+.++++++.++.+|..+. ++++.|++++|.++.+ +..|..+++|++|++++|.++.+....|.++++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3567777777777776554 4677778877777765 356777777888888777777776666777777777777777
Q ss_pred ccccccc-cccCCCcccEEeccCCccccC-CCCCcCCCCCcEEEcCCCCCccC-CccccCCCCCCEEEcCCCcccccchh
Q 010567 119 LLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE 195 (507)
Q Consensus 119 ~~~~~~~-~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~ 195 (507)
.+..++. .+..+++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|++..++..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 7777664 456777777777777777754 44667777777777777777644 44567777777777777766665543
Q ss_pred hhc--cccCeEECCCCCCCCCCc-cccCCCCccEEEccCCc
Q 010567 196 ACQ--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNP 233 (507)
Q Consensus 196 ~~~--~~L~~l~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 233 (507)
... .+|+.|++++|.+.+++. .+..+++|+.|+++++.
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence 221 125555555555555322 35556666666666553
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-31 Score=255.97 Aligned_cols=305 Identities=23% Similarity=0.255 Sum_probs=176.1
Q ss_pred ccCCCeEEcCCCcCccCCcc-ccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCccccccc-ccccCCCcccEEe
Q 010567 60 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLD 137 (507)
Q Consensus 60 ~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~ 137 (507)
+.+++.++++++.++.+|.. +..+++|++|++++|.+..++...+..+++|++|++++|.+..++ ..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666666544 456666666666666666666555666666666666666665553 3455666666666
Q ss_pred ccCCccccCCCC-CcCCCCCcEEEcCCCCCccC-CccccCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCCCC
Q 010567 138 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 215 (507)
Q Consensus 138 l~~~~i~~l~~~-~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 215 (507)
+++|.+..+|.. +.++++|++|++++|.++.+ +..+..+++|++|++++|++..+ +
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~ 181 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----------------------D 181 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----------------------C
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----------------------c
Confidence 666666655544 35566666666666655544 23355555555555555544432 1
Q ss_pred ccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCC
Q 010567 216 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 295 (507)
Q Consensus 216 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 295 (507)
+..+++|+.+++++|.++.+
T Consensus 182 --~~~l~~L~~L~l~~n~l~~~---------------------------------------------------------- 201 (390)
T 3o6n_A 182 --LSLIPSLFHANVSYNLLSTL---------------------------------------------------------- 201 (390)
T ss_dssp --GGGCTTCSEEECCSSCCSEE----------------------------------------------------------
T ss_pred --cccccccceeeccccccccc----------------------------------------------------------
Confidence 33445566666655544211
Q ss_pred CChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCC
Q 010567 296 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 375 (507)
Q Consensus 296 ~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 375 (507)
...++|++|++++|.+..+|.. ..++|++|++++|.+++.. .+..+++|++|++++|.++++.+..+..++
T Consensus 202 -----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272 (390)
T ss_dssp -----ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred -----CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHccccc
Confidence 0113456666666665555432 2356666666666666542 345666777777777766666555566666
Q ss_pred CceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCccccccccccCCCCCCeEeCCCC
Q 010567 376 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 455 (507)
Q Consensus 376 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~ 455 (507)
+|+.|++++|.+.+. +..+..+++|+.|++++|++..+|..+..+++|+.|++++|.++.++ +..+++|++|++++|
T Consensus 273 ~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 273 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp SCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred cCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence 666666666655442 22234456666666666666666655556666666666666666554 455566666666666
Q ss_pred CCC
Q 010567 456 NIS 458 (507)
Q Consensus 456 ~l~ 458 (507)
++.
T Consensus 350 ~~~ 352 (390)
T 3o6n_A 350 DWD 352 (390)
T ss_dssp CEE
T ss_pred Ccc
Confidence 554
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-31 Score=261.91 Aligned_cols=313 Identities=22% Similarity=0.294 Sum_probs=248.8
Q ss_pred CCeEEcCCCcCccCCccccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCcccccc-cccccCCCcccEEeccCC
Q 010567 63 LSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQN 141 (507)
Q Consensus 63 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 141 (507)
-+.++.++..++.+|..+. ++++.|++++|+++.+....|.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4688999999999998764 6899999999999999888899999999999999999876 678999999999999999
Q ss_pred ccccCCC-CCcCCCCCcEEEcCCCCCccC-CccccCCCCCCEEEcCCCcccccchhhhc--cccCeEECCCCCCCCCCcc
Q 010567 142 RILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPE 217 (507)
Q Consensus 142 ~i~~l~~-~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~ 217 (507)
.+..+|. .+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+...... .+|+.|++++|.+++++..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 9998876 478999999999999999855 66788999999999999988876543322 2388888888888876653
Q ss_pred -ccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCC
Q 010567 218 -IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI 296 (507)
Q Consensus 218 -l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 296 (507)
+..+++|+.|++++|.+..+..
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~--------------------------------------------------------- 193 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRD--------------------------------------------------------- 193 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECT---------------------------------------------------------
T ss_pred HhcccCCCcEEeCCCCcCcEeCh---------------------------------------------------------
Confidence 7778888888888876643321
Q ss_pred ChhhhcCCCccEEEcCCCccC-cCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCC
Q 010567 297 PSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 375 (507)
Q Consensus 297 ~~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 375 (507)
..+..+++|+.|++++|... .+|.......+|++|++++|.++.++...+..+++|+.|++++|.++.++...+..++
T Consensus 194 -~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 194 -YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp -TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred -hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 12334567777777776533 3555545555788888888888887777777888888888888888877777778888
Q ss_pred CceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCccc
Q 010567 376 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 435 (507)
Q Consensus 376 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~ 435 (507)
+|+.|++++|.+.+..+..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 888888888888777777788888888888888888876654 466788888888888766
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-31 Score=254.93 Aligned_cols=304 Identities=19% Similarity=0.244 Sum_probs=186.8
Q ss_pred CCcccEEeCCCCCCCCCchh-hhcccCCCeEEcCCCcCccCCc-cccCCCCCcEEEcCCCcccccchhhhcCccccceee
Q 010567 37 ATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 114 (507)
Q Consensus 37 ~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 114 (507)
+++++.++++++.++.+|.. +..+++|++|++++|.++.++. .+..+++|++|++++|+++.++...+.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666666553 4566667777777666665543 566666777777777666666666666667777777
Q ss_pred cCCccccccccc-ccCCCcccEEeccCCccccCC-CCCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCccccc
Q 010567 115 ASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 192 (507)
Q Consensus 115 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 192 (507)
+++|.+..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.++.++ +..+++|+++++++|.+..+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc
Confidence 777666666643 456667777777777666553 34666677777777777666553 45566777777777766654
Q ss_pred chhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhh
Q 010567 193 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 272 (507)
Q Consensus 193 ~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (507)
+. ...++++++++|.+..++.. ..++|+.|++++|.++..
T Consensus 202 ~~---~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~----------------------------------- 241 (390)
T 3o6n_A 202 AI---PIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT----------------------------------- 241 (390)
T ss_dssp EC---CSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC-----------------------------------
T ss_pred CC---CCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc-----------------------------------
Confidence 32 22477777777776665432 235677777766655311
Q ss_pred hhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcC-CccccCCCcCcEEecccCcccCCchHHhhcCC
Q 010567 273 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLS 351 (507)
Q Consensus 273 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 351 (507)
..+..+++|++|++++|.+.++ |..+..+++|++|++++|.++.++.. +..++
T Consensus 242 -------------------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~ 295 (390)
T 3o6n_A 242 -------------------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIP 295 (390)
T ss_dssp -------------------------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-SSCCT
T ss_pred -------------------------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-cCCCC
Confidence 2234455566666666665553 44455666666666666666554332 24456
Q ss_pred CCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCc
Q 010567 352 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 412 (507)
Q Consensus 352 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 412 (507)
+|++|++++|.++.++.. +..+++|+.|++++|.+.... +..+++|+.|++++|++.
T Consensus 296 ~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 296 TLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp TCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred CCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCcc
Confidence 666666666666655443 455666666666666655442 455667777777777665
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.1e-30 Score=261.42 Aligned_cols=305 Identities=23% Similarity=0.258 Sum_probs=191.9
Q ss_pred ccCCCeEEcCCCcCccCCcc-ccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCccccccc-ccccCCCcccEEe
Q 010567 60 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLD 137 (507)
Q Consensus 60 ~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~ 137 (507)
+.+++.++++++.++.+|.. +..+++|++|++++|.++.++...|..+++|++|++++|.+..++ ..+..+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45666666666666666543 455666666666666666666555666666666666666665554 3456666666666
Q ss_pred ccCCccccCCCC-CcCCCCCcEEEcCCCCCccCC-ccccCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCCCC
Q 010567 138 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 215 (507)
Q Consensus 138 l~~~~i~~l~~~-~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 215 (507)
+++|.+..+|.. +.++++|++|++++|.++.++ ..++.+++|++|++++|.+..++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------- 187 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------- 187 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------------------
Confidence 666666665544 356666666666666665443 34555566666666555544332
Q ss_pred ccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCC
Q 010567 216 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 295 (507)
Q Consensus 216 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~ 295 (507)
++.+++|+.+++++|.++.+
T Consensus 188 --~~~l~~L~~L~l~~n~l~~l---------------------------------------------------------- 207 (597)
T 3oja_B 188 --LSLIPSLFHANVSYNLLSTL---------------------------------------------------------- 207 (597)
T ss_dssp --GGGCTTCSEEECCSSCCSEE----------------------------------------------------------
T ss_pred --hhhhhhhhhhhcccCccccc----------------------------------------------------------
Confidence 23445555666655544211
Q ss_pred CChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCC
Q 010567 296 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 375 (507)
Q Consensus 296 ~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 375 (507)
...++|+.|++++|.+..++..+ .++|+.|++++|.+++. ..+..+++|+.|++++|.++++++..+..++
T Consensus 208 -----~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 208 -----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp -----ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred -----cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 01124555666666555544322 24667777777766654 2356677777777777777776666677777
Q ss_pred CceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCccccccccccCCCCCCeEeCCCC
Q 010567 376 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 455 (507)
Q Consensus 376 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~ 455 (507)
+|+.|++++|.+.+. +..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+..+| +..+++|++|++++|
T Consensus 279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 355 (597)
T ss_dssp SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence 777777777766553 33345677888888888888877777777888888888888877775 666778888888888
Q ss_pred CCC
Q 010567 456 NIS 458 (507)
Q Consensus 456 ~l~ 458 (507)
.+.
T Consensus 356 ~~~ 358 (597)
T 3oja_B 356 DWD 358 (597)
T ss_dssp CEE
T ss_pred CCC
Confidence 653
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.1e-30 Score=258.75 Aligned_cols=191 Identities=19% Similarity=0.271 Sum_probs=108.9
Q ss_pred CCcccEEeCCCCCCCCCchh-hhcccCCCeEEcCCCcCccCC-ccccCCCCCcEEEcCCCcccccchhhhcCccccceee
Q 010567 37 ATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 114 (507)
Q Consensus 37 ~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 114 (507)
+.+++.++++++.++.+|.. +..+++|++|++++|.++.++ ..|..+++|++|++++|.++.++...|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34556666666666655543 455566666666666665443 2555666666666666666665555556666666666
Q ss_pred cCCccccccccc-ccCCCcccEEeccCCccccCCC-CCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCccccc
Q 010567 115 ASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 192 (507)
Q Consensus 115 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~ 192 (507)
+++|.+..+|.. +..+++|++|++++|.+..++. .+..+++|++|++++|.++.++ +..+++|+.+++++|.+..+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc
Confidence 666666555533 3556666666666666654433 4556666666666666665543 34455666666666655543
Q ss_pred chhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCcc
Q 010567 193 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 234 (507)
Q Consensus 193 ~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 234 (507)
+. ...|+.+++++|.+..++..+ .++|+.|++++|.+
T Consensus 208 ~~---~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l 244 (597)
T 3oja_B 208 AI---PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNL 244 (597)
T ss_dssp EC---CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCC
T ss_pred cC---CchhheeeccCCccccccccc--CCCCCEEECCCCCC
Confidence 21 223666666666665543322 24566666666554
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.3e-29 Score=233.75 Aligned_cols=284 Identities=21% Similarity=0.306 Sum_probs=197.8
Q ss_pred cccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCc-cccCCCCCcEEEcCCCcccccchhhhcCccccceeecCC
Q 010567 39 ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 117 (507)
Q Consensus 39 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 117 (507)
+++.++++++.++.+|..+. +.+++|++++|.++.++. .+..+++|++|++++|+++.+....+.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 78888888888888876554 578888888888887754 678888888888888888887666688888888888888
Q ss_pred cccccccccccCCCcccEEeccCCccccCCC-CCcCCCCCcEEEcCCCCCc---cCCccccCCCCCCEEEcCCCcccccc
Q 010567 118 NLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS---ALPAELGKLSKLGTLDLHSNQLKEYC 193 (507)
Q Consensus 118 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~---~l~~~l~~~~~L~~L~l~~~~~~~~~ 193 (507)
|.+..+|..+. ++|++|++++|.+..++. .+.++++|++|++++|.++ ..+..+..+++|++|++++|++..++
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 88887776544 678888888888876654 4677888888888888775 34556777888888888888877766
Q ss_pred hhhhccccCeEECCCCCCCCC-CccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhh
Q 010567 194 VEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 272 (507)
Q Consensus 194 ~~~~~~~L~~l~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (507)
.... .+|+++++++|.++++ +..+..+++|+.|++++|.++.++
T Consensus 188 ~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------------------------- 232 (330)
T 1xku_A 188 QGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD---------------------------------- 232 (330)
T ss_dssp SSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC----------------------------------
T ss_pred cccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC----------------------------------
Confidence 5443 4577777777777764 455777777777777777653221
Q ss_pred hhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhc---
Q 010567 273 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS--- 349 (507)
Q Consensus 273 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--- 349 (507)
+..+..+++|++|++++|.+..+|..+..+++|++|++++|.++.++...|..
T Consensus 233 ------------------------~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 233 ------------------------NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp ------------------------TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred ------------------------hhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 12334456677777777777777766667777777777777776665544432
Q ss_pred ---CCCCCEEEccCCCCCC--CCccccCCCCCceEEEccCc
Q 010567 350 ---LSSLSCLKLDNNPLRQ--VPSDGFKDIPMLQILDLSYN 385 (507)
Q Consensus 350 ---~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~~ 385 (507)
.+.++.+++++|.+.. +++..|..++.++.+++++|
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 2556666666666543 44444555555555555544
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.1e-29 Score=236.66 Aligned_cols=283 Identities=23% Similarity=0.326 Sum_probs=191.4
Q ss_pred cccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCC-ccccCCCCCcEEEcCCCcccccchhhhcCccccceeecCC
Q 010567 39 ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 117 (507)
Q Consensus 39 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 117 (507)
+++.++++++.++.+|..+. +++++|++++|.++.++ ..+..+++|++|++++|+++.+....+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 78888888888888887654 58888999988888764 4788888899999988888888777788888888888888
Q ss_pred cccccccccccCCCcccEEeccCCccccCCC-CCcCCCCCcEEEcCCCCCc---cCCccccCCCCCCEEEcCCCcccccc
Q 010567 118 NLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS---ALPAELGKLSKLGTLDLHSNQLKEYC 193 (507)
Q Consensus 118 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~---~l~~~l~~~~~L~~L~l~~~~~~~~~ 193 (507)
|.+..+|..+. ++|++|++++|.+..++. .+..+++|++|++++|.++ ..+..+..+ +|++|++++|++..++
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 88888776554 788888888888887765 3777888888888888775 334555655 7888888888777665
Q ss_pred hhhhccccCeEECCCCCCCCCC-ccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhh
Q 010567 194 VEACQLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 272 (507)
Q Consensus 194 ~~~~~~~L~~l~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (507)
.... ..|++|++++|.+++++ ..+..+++|+.|++++|.++.+
T Consensus 189 ~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~----------------------------------- 232 (332)
T 2ft3_A 189 KDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI----------------------------------- 232 (332)
T ss_dssp SSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-----------------------------------
T ss_pred cccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-----------------------------------
Confidence 5433 34777777777766644 3466666666666666654321
Q ss_pred hhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhc---
Q 010567 273 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS--- 349 (507)
Q Consensus 273 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--- 349 (507)
.+..+..+++|+.|++++|.+..+|..+..+++|++|++++|.++.++...|..
T Consensus 233 -----------------------~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 233 -----------------------ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp -----------------------CTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred -----------------------ChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 112334455666666666666666666666666666666666666555443332
Q ss_pred ---CCCCCEEEccCCCCC--CCCccccCCCCCceEEEccCc
Q 010567 350 ---LSSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYN 385 (507)
Q Consensus 350 ---~~~L~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~ 385 (507)
.+.|+.+++.+|.+. .+++.++..+++|+.+++++|
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 244555555555554 344444555555555555443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.3e-29 Score=232.93 Aligned_cols=286 Identities=22% Similarity=0.306 Sum_probs=177.7
Q ss_pred ccceeecCCcccccccccccCCCcccEEeccCCccccCC-CCCcCCCCCcEEEcCCCCCccC-CccccCCCCCCEEEcCC
Q 010567 109 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHS 186 (507)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~ 186 (507)
+++.++++++.+..+|..+. ++++.|++++|.+..++ ..+.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 56666666666666665442 46777777777776553 3567777777777777777654 55677777777777777
Q ss_pred CcccccchhhhccccCeEECCCCCCCCCCcc-ccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCcccc
Q 010567 187 NQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA 265 (507)
Q Consensus 187 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (507)
|++..++.... .+|++|++++|.+.+++.. +..+++|+.|++++|.++...
T Consensus 112 n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------- 163 (332)
T 2ft3_A 112 NHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG--------------------------- 163 (332)
T ss_dssp SCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG---------------------------
T ss_pred CcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC---------------------------
Confidence 77766655443 3466777777766665543 666777777777776553110
Q ss_pred ccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchH
Q 010567 266 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 345 (507)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~ 345 (507)
..+..+..+ +|+.|++++|.+..+|..+.
T Consensus 164 -----------------------------~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--------------------- 192 (332)
T 2ft3_A 164 -----------------------------FEPGAFDGL-KLNYLRISEAKLTGIPKDLP--------------------- 192 (332)
T ss_dssp -----------------------------SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---------------------
T ss_pred -----------------------------CCcccccCC-ccCEEECcCCCCCccCcccc---------------------
Confidence 011111111 44444444444444443221
Q ss_pred HhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCc
Q 010567 346 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLR 425 (507)
Q Consensus 346 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~ 425 (507)
++|++|++++|.++.++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.+|..+..+++|+
T Consensus 193 -----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 193 -----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267 (332)
T ss_dssp -----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCC
T ss_pred -----CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCC
Confidence 455555566665555555556666666666666666666555566677777777777777777777777788888
Q ss_pred EEEcCCCccccccc-cccC------CCCCCeEeCCCCCCC--CCCCcccCCCccCceEeccCCC
Q 010567 426 ILDLSQNSLQSIPE-GFKN------LTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNP 480 (507)
Q Consensus 426 ~L~l~~~~l~~l~~-~~~~------l~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~n~ 480 (507)
+|++++|.++.++. .+.. .+.|+.|++++|.+. .+++..+..+++|+.+++++|+
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88888888777643 3332 467888888888776 5555555555888888888774
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.8e-28 Score=228.81 Aligned_cols=287 Identities=24% Similarity=0.323 Sum_probs=164.0
Q ss_pred ccceeecCCcccccccccccCCCcccEEeccCCccccCCC-CCcCCCCCcEEEcCCCCCccC-CccccCCCCCCEEEcCC
Q 010567 109 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHS 186 (507)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~ 186 (507)
+++.++++++.+..+|..+. +.++.|++++|.++.++. .+.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45555555555555554332 456666666666665544 466666666666666666654 55566666777777766
Q ss_pred CcccccchhhhccccCeEECCCCCCCCCCc-cccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCcccc
Q 010567 187 NQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA 265 (507)
Q Consensus 187 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (507)
|++..++.... ..|++|++++|.+.+++. .+.++++|+.|++++|.++..
T Consensus 110 n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------- 160 (330)
T 1xku_A 110 NQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------------- 160 (330)
T ss_dssp SCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------------
T ss_pred CcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------------
Confidence 66665554332 346666666666666443 366677777777777655210
Q ss_pred ccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchH
Q 010567 266 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 345 (507)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~ 345 (507)
...+..+..+++|+.|++++|.+..+|..+. ++|++
T Consensus 161 ----------------------------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~-------------- 196 (330)
T 1xku_A 161 ----------------------------GIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTE-------------- 196 (330)
T ss_dssp ----------------------------GBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSE--------------
T ss_pred ----------------------------CcChhhccCCCCcCEEECCCCccccCCcccc--ccCCE--------------
Confidence 0122333445566666666666555554322 44444
Q ss_pred HhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCc
Q 010567 346 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLR 425 (507)
Q Consensus 346 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~ 425 (507)
|++++|.++++++..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.+|..+..+++|+
T Consensus 197 ----------L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 266 (330)
T 1xku_A 197 ----------LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 266 (330)
T ss_dssp ----------EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred ----------EECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcC
Confidence 4444444444444444455555555555555444444445556666666666666666666666667777
Q ss_pred EEEcCCCcccccccc-cc------CCCCCCeEeCCCCCCC--CCCCcccCCCccCceEeccCCC
Q 010567 426 ILDLSQNSLQSIPEG-FK------NLTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNP 480 (507)
Q Consensus 426 ~L~l~~~~l~~l~~~-~~------~l~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~n~ 480 (507)
+|++++|.++.+|.. +. ..+.++.|++++|.+. .+++..+..+++++.+++++|+
T Consensus 267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 777777776666422 22 2467777888888765 3544444445778888877764
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6e-32 Score=266.50 Aligned_cols=379 Identities=20% Similarity=0.184 Sum_probs=235.1
Q ss_pred cCCCeEEcCCCcCccCC--ccccCCCCCcEEEcCCCcccccc----hhhhcCccccceeecCCcccccc-c-ccccCCC-
Q 010567 61 LNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNGM-P-ETIGSLS- 131 (507)
Q Consensus 61 ~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~-~-~~~~~~~- 131 (507)
++|++|+++++.++..+ ..+..+++|++|++++|++++.. ..++..+++|++|++++|.+... + .....++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35666777666665322 22556666667776666665321 22355556666666666655331 1 1112222
Q ss_pred ---cccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCcccccchhh-----h--cccc
Q 010567 132 ---RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-----C--QLRL 201 (507)
Q Consensus 132 ---~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~-----~--~~~L 201 (507)
+|++|++++|.+.... ...++..+..+++|++|++++|.+.+..... . ..+|
T Consensus 83 ~~~~L~~L~L~~n~i~~~~------------------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 144 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAG------------------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144 (461)
T ss_dssp TTCCCCEEECTTSCCBGGG------------------HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCceeEEEccCCCCCHHH------------------HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcc
Confidence 4555555555544100 0022334444455555555555444211110 0 1125
Q ss_pred CeEECCCCCCCC-----CCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhh
Q 010567 202 SVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 276 (507)
Q Consensus 202 ~~l~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (507)
++|++++|.+++ ++..+..+++|+.|++++|.++.... ..+....
T Consensus 145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~------------------------------~~l~~~l 194 (461)
T 1z7x_W 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV------------------------------RVLCQGL 194 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH------------------------------HHHHHHH
T ss_pred eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH------------------------------HHHHHHH
Confidence 555555555554 23445667788888888776532110 0011111
Q ss_pred hccccccceEEecCCCCCC-----CChhhhcCCCccEEEcCCCccCcC------CccccCCCcCcEEecccCcccCCc--
Q 010567 277 TRLSVTSKELSLEGMNLSA-----IPSEIWEAGEITKLDLSRNSIQEL------PPELSSCASLQTLILSRNKIKDWP-- 343 (507)
Q Consensus 277 ~~~~~~l~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~i------~~~~~~~~~L~~L~l~~~~l~~~~-- 343 (507)
.....+++.|++++|.+.. ++..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+++..
T Consensus 195 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~ 274 (461)
T 1z7x_W 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274 (461)
T ss_dssp HHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred hcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH
Confidence 1223467888888887764 466677789999999999987762 222346889999999999888742
Q ss_pred --hHHhhcCCCCCEEEccCCCCCCCCcccc-----CCCCCceEEEccCcccCCCC----CCCCCCCCcCcEEEcccccCc
Q 010567 344 --DAILTSLSSLSCLKLDNNPLRQVPSDGF-----KDIPMLQILDLSYNIASLPE----NPPFSSLPHLQELYLRRMQLR 412 (507)
Q Consensus 344 --~~~~~~~~~L~~L~l~~~~i~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~ 412 (507)
...+..+++|++|++++|.++..+...+ ...++|+.|++++|.+++.. +..+..+++|++|++++|.++
T Consensus 275 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 3446679999999999998875433323 23479999999999877642 233456799999999999988
Q ss_pred cc-ccchhc-----cCCCcEEEcCCCccc-----cccccccCCCCCCeEeCCCCCCCCC-----CCcccCCCccCceEec
Q 010567 413 EA-PTDILR-----LQQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNISAL-----PPELGLLEPSLQALRL 476 (507)
Q Consensus 413 ~l-~~~~~~-----~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~l~~~-----~~~~~~~~~~L~~L~l 476 (507)
.. +..+.. .++|++|++++|.++ .+|..+..+++|++|++++|+++.. ...+.....+|+.|++
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~ 434 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 434 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheee
Confidence 33 222322 679999999999998 6788899999999999999998732 2223232357999999
Q ss_pred cCCCCCCccHH
Q 010567 477 DGNPLRSIRRT 487 (507)
Q Consensus 477 ~~n~~~~~~~~ 487 (507)
.++.+....++
T Consensus 435 ~~~~~~~~~~~ 445 (461)
T 1z7x_W 435 YDIYWSEEMED 445 (461)
T ss_dssp TTCCCCHHHHH
T ss_pred cccccCHHHHH
Confidence 99988754433
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.2e-32 Score=266.96 Aligned_cols=371 Identities=21% Similarity=0.211 Sum_probs=207.5
Q ss_pred CCCCEEEcCCCccccc--CccccCCCcccEEeCCCCCCC-----CCchhhhcccCCCeEEcCCCcCccC--CccccCCC-
Q 010567 15 HMLKSLDVSFNSIMKI--PDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITSL--PEDLADCS- 84 (507)
Q Consensus 15 ~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~l--~~~~~~~~- 84 (507)
++|+.|+++++.+... ...+..+++|++|++++|.++ .++..+..+++|++|++++|.++.. ......++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4556666666665532 222555666666666666655 3344555556666666666655421 11112222
Q ss_pred ---CCcEEEcCCCcccccc----hhhhcCccccceeecCCcccccc-cccccCCCcccEEeccCCccccCCCC-CcCCCC
Q 010567 85 ---KMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPSS-ISGCCS 155 (507)
Q Consensus 85 ---~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~ 155 (507)
+|++|++++|++++.. ...+..+++|++|++++|.+... +..+ ... ....++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l-------------------~~~l~~~~~~ 143 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL-------------------CEGLLDPQCR 143 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH-------------------HHHHTSTTCC
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH-------------------HHHHhcCCCc
Confidence 4666666655555321 23344555555555555544321 0100 000 112334
Q ss_pred CcEEEcCCCCCcc-----CCccccCCCCCCEEEcCCCcccccchhhh-------ccccCeEECCCCCCCC-----CCccc
Q 010567 156 LAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----LPPEI 218 (507)
Q Consensus 156 L~~L~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------~~~L~~l~l~~~~~~~-----~~~~l 218 (507)
|++|++++|.++. ++..+..+++|++|++++|.+.+...... ..+|++|++++|.+++ ++..+
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH
Confidence 5555555555442 23445556677777777776654322211 1247777777777766 35556
Q ss_pred cCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCCCh
Q 010567 219 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 298 (507)
Q Consensus 219 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 298 (507)
..+++|+.|++++|.++.... ..++.
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~------------------------------------------------------~~l~~ 249 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGM------------------------------------------------------AELCP 249 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHH------------------------------------------------------HHHHH
T ss_pred HhCCCccEEeccCCcCChHHH------------------------------------------------------HHHHH
Confidence 778888999988887632110 00001
Q ss_pred hh-hcCCCccEEEcCCCccCc-----CCccccCCCcCcEEecccCcccCCchHHhhc-----CCCCCEEEccCCCCCCCC
Q 010567 299 EI-WEAGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPDAILTS-----LSSLSCLKLDNNPLRQVP 367 (507)
Q Consensus 299 ~~-~~~~~L~~L~l~~~~~~~-----i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l~~~~i~~~~ 367 (507)
.+ ..+++|++|++++|.+++ ++..+..+++|++|++++|.+.+.....+.. .++|++|++++|.++...
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 11 124566666666666555 4555555666777777776665433322222 257777777777666542
Q ss_pred c----cccCCCCCceEEEccCcccCCCCCCCCC-----CCCcCcEEEcccccCc-----ccccchhccCCCcEEEcCCCc
Q 010567 368 S----DGFKDIPMLQILDLSYNIASLPENPPFS-----SLPHLQELYLRRMQLR-----EAPTDILRLQQLRILDLSQNS 433 (507)
Q Consensus 368 ~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~ 433 (507)
. ..+..+++|+.|++++|.+++.....+. ..++|++|++++|.++ .++..+..+++|++|++++|.
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 2 2345567777777777765543222221 2578999999999888 577778888999999999998
Q ss_pred cccc-----cccc-cCCCCCCeEeCCCCCCC
Q 010567 434 LQSI-----PEGF-KNLTSLTELDLSDNNIS 458 (507)
Q Consensus 434 l~~l-----~~~~-~~l~~L~~L~l~~~~l~ 458 (507)
++.. .+.+ .....|+.|++.++.+.
T Consensus 410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 8732 2223 23457888888888665
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2e-30 Score=263.93 Aligned_cols=415 Identities=15% Similarity=0.113 Sum_probs=270.3
Q ss_pred cHHhhcccCCCCEEEcCCCccc----ccCcc------------ccCCCcccEEeCCCCCCCC-Cchhhhc-ccC-CCeEE
Q 010567 7 LLYVFDRLHMLKSLDVSFNSIM----KIPDE------------IGSATALVKFDCSSNQLKE-LPSSLGR-CLN-LSDFK 67 (507)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~~~i~----~~~~~------------~~~~~~L~~L~l~~~~l~~-~~~~~~~-~~~-L~~L~ 67 (507)
.+..++++++|+.|+++++... .+|.. ...+++|++|+++++.++. .+..+.. ++. |++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 4567788999999999886321 11211 2268899999999987762 2344444 344 99999
Q ss_pred cCCCc-Cc--cCCccccCCCCCcEEEcCCCccccc----chhhhcCccccceeecCCcccc-----cccccccCCCcccE
Q 010567 68 ASNNC-IT--SLPEDLADCSKMSKLDVEGNKLTVL----SNNLIASWTMLTELIASKNLLN-----GMPETIGSLSRLIR 135 (507)
Q Consensus 68 l~~~~-~~--~l~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~ 135 (507)
+++|. ++ .++.....+++|++|++++|.+++. ....+..+++|++|+++++.+. .++..+..+++|+.
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 99886 22 2333445789999999999987654 2334677889999999888875 23445567889999
Q ss_pred EeccCCccccCCCCCcCCCCCcEEEcCCCCCc----cCCccccCCCCCCEEEcCCCcccccchhhhcc-ccCeEECCCCC
Q 010567 136 LDLHQNRILSIPSSISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNS 210 (507)
Q Consensus 136 L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~----~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~L~~l~l~~~~ 210 (507)
|++++|.+..++..+..+++|++|.++..... ..+..+..+++|+.++++.+....++...... +|++|++++|.
T Consensus 225 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp EECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred EeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 99999888887777888889999988754222 33445677788888888776544554443333 37788887777
Q ss_pred CCC--CCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEe
Q 010567 211 LSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 288 (507)
Q Consensus 211 ~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l 288 (507)
+++ +...+..+++|+.|++.++ +..
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~~~-~~~---------------------------------------------------- 331 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETRNV-IGD---------------------------------------------------- 331 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGG-GHH----------------------------------------------------
T ss_pred CCHHHHHHHHHhCcCCCEEeccCc-cCH----------------------------------------------------
Confidence 554 2223567777777777622 110
Q ss_pred cCCCCCCCChhhhcCCCccEEEcCC-----------CccCc--CCccccCCCcCcEEecccCcccCCchHHhhc-CCCCC
Q 010567 289 EGMNLSAIPSEIWEAGEITKLDLSR-----------NSIQE--LPPELSSCASLQTLILSRNKIKDWPDAILTS-LSSLS 354 (507)
Q Consensus 289 ~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~--i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~ 354 (507)
..++.....+++|++|++++ +.+++ ++.....+++|++|+++.+.+++.....+.. +++|+
T Consensus 332 -----~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~ 406 (592)
T 3ogk_B 332 -----RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLC 406 (592)
T ss_dssp -----HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCC
T ss_pred -----HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCc
Confidence 01112223456677777763 23332 2222345778888888777776654444444 78888
Q ss_pred EEEcc----CCCCCCCCcc-----ccCCCCCceEEEccCcc--cCCCCCCCC-CCCCcCcEEEcccccCc--ccccchhc
Q 010567 355 CLKLD----NNPLRQVPSD-----GFKDIPMLQILDLSYNI--ASLPENPPF-SSLPHLQELYLRRMQLR--EAPTDILR 420 (507)
Q Consensus 355 ~L~l~----~~~i~~~~~~-----~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~i~--~l~~~~~~ 420 (507)
+|+++ .+.+++.+.+ .+..+++|+.|+++.|. +++.....+ ..+++|+.|++++|+++ .++..+..
T Consensus 407 ~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 486 (592)
T 3ogk_B 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486 (592)
T ss_dssp EEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC
T ss_pred EEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc
Confidence 88886 4455554321 14567888888886543 332222122 34688999999988887 45555677
Q ss_pred cCCCcEEEcCCCccc--cccccccCCCCCCeEeCCCCCCCCC-CCcccCCCccCceEeccCC
Q 010567 421 LQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNNISAL-PPELGLLEPSLQALRLDGN 479 (507)
Q Consensus 421 ~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n 479 (507)
+++|++|++++|.++ .++..+..+++|++|++++|+++.. ...+...+|.+....+..+
T Consensus 487 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 889999999999876 3455567889999999999987743 2334334466666655544
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.1e-25 Score=225.61 Aligned_cols=258 Identities=26% Similarity=0.285 Sum_probs=148.6
Q ss_pred cccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCC
Q 010567 108 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 187 (507)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~ 187 (507)
.+++.++++++.++.+|..+. ++|+.|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence 356677777777776665443 567777777777666665 45666777777766666655 4466666666666
Q ss_pred cccccchhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCcccccc
Q 010567 188 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 267 (507)
Q Consensus 188 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (507)
.+..++. ...+|+.|++++|.++.+|.. +++|+.|++++|.+
T Consensus 112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l--------------------------------- 153 (622)
T 3g06_A 112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL--------------------------------- 153 (622)
T ss_dssp CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC---------------------------------
T ss_pred cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC---------------------------------
Confidence 6665544 222355555555555555442 24455555555443
Q ss_pred chhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHh
Q 010567 268 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIL 347 (507)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 347 (507)
..+|. ..++|+.|++++|.+..+| ..+++|+.|++++|.+++++.
T Consensus 154 --------------------------~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~--- 198 (622)
T 3g06_A 154 --------------------------ASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPT--- 198 (622)
T ss_dssp --------------------------SCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---
T ss_pred --------------------------CCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCC---
Confidence 22221 1245666666666666665 334566666666666665443
Q ss_pred hcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEE
Q 010567 348 TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL 427 (507)
Q Consensus 348 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L 427 (507)
..++|+.|++++|.++.++.. +++|+.|++++|.+++.. ..+++|+.|++++|.|+.+|. .+++|+.|
T Consensus 199 -~~~~L~~L~L~~N~l~~l~~~----~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L 266 (622)
T 3g06_A 199 -LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM---LPSGLLSL 266 (622)
T ss_dssp -CCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred -ccchhhEEECcCCcccccCCC----CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc---ccccCcEE
Confidence 235666666666666655531 355666666666555422 334556666666665555554 34556666
Q ss_pred EcCCCccccccccccCCCCCCeEeCCCCCCC
Q 010567 428 DLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 458 (507)
Q Consensus 428 ~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~ 458 (507)
++++|.++.+|..+.++++|+.|++++|.++
T Consensus 267 ~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp ECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred eCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 6666665555555555666666666666554
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4e-25 Score=221.62 Aligned_cols=265 Identities=27% Similarity=0.300 Sum_probs=212.3
Q ss_pred CCCcEEEcCCCcccccchhhhcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCC
Q 010567 84 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 163 (507)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~ 163 (507)
.+++.|+++++.++.++.... ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 368899999999998876533 789999999999988886 56889999999999888876 678899999999
Q ss_pred CCCccCCccccCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCccccccccccC
Q 010567 164 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 243 (507)
Q Consensus 164 ~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 243 (507)
|.++.+|. .+++|+.|++++|++..++... .+|++|++++|.++++|. ...+|+.|++++|.++
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~l--~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-------- 174 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQLTSLPVLP--PGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT-------- 174 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS--------
T ss_pred CcCCCCCC---CCCCcCEEECCCCCCCcCCCCC--CCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC--------
Confidence 99888876 5678999999999988877643 559999999998888765 3456777888777653
Q ss_pred CCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccc
Q 010567 244 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 323 (507)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~ 323 (507)
.+| ..+++|+.|++++|.+..+|..
T Consensus 175 ---------------------------------------------------~l~---~~~~~L~~L~Ls~N~l~~l~~~- 199 (622)
T 3g06_A 175 ---------------------------------------------------SLP---MLPSGLQELSVSDNQLASLPTL- 199 (622)
T ss_dssp ---------------------------------------------------CCC---CCCTTCCEEECCSSCCSCCCCC-
T ss_pred ---------------------------------------------------CCc---ccCCCCcEEECCCCCCCCCCCc-
Confidence 223 2246788899999888887753
Q ss_pred cCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcE
Q 010567 324 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 403 (507)
Q Consensus 324 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 403 (507)
+++|+.|++++|.++.++. .+++|+.|++++|.++.++ ..+++|+.|++++|.+..... .+++|+.
T Consensus 200 --~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~ 265 (622)
T 3g06_A 200 --PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLS 265 (622)
T ss_dssp --CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCE
T ss_pred --cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcE
Confidence 4788999999998887664 3578999999999988877 356889999999998875443 5688999
Q ss_pred EEcccccCcccccchhccCCCcEEEcCCCccccc-ccccc
Q 010567 404 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFK 442 (507)
Q Consensus 404 L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l-~~~~~ 442 (507)
|++++|.|+.+|..+..+++|+.|++++|.+... |..+.
T Consensus 266 L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 266 LSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp EECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred EeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 9999999999998889999999999999988743 44443
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.4e-25 Score=208.10 Aligned_cols=247 Identities=26% Similarity=0.317 Sum_probs=190.8
Q ss_pred EEEcCCCcccccchhhhccccCeEECCCCCCCCCCcc-ccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCC
Q 010567 181 TLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 259 (507)
Q Consensus 181 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (507)
.++.++++++.+|... ...+++|++++|.++.++.. +.++++|+.|++++|.++.+.
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------------------- 68 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG--------------------- 68 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE---------------------
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc---------------------
Confidence 4444444555444422 12466666666666666654 577888888888887663211
Q ss_pred CCccccccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcc
Q 010567 260 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 339 (507)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l 339 (507)
..+.....+++|++|++++|.+..+|..+..+++|++|++++|.+
T Consensus 69 -----------------------------------~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l 113 (306)
T 2z66_A 69 -----------------------------------CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113 (306)
T ss_dssp -----------------------------------EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE
T ss_pred -----------------------------------CcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcc
Confidence 113344556788999999998888888888899999999999988
Q ss_pred cCCch-HHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCC-CCCCCCCCCCcCcEEEcccccCccc-cc
Q 010567 340 KDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREA-PT 416 (507)
Q Consensus 340 ~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l-~~ 416 (507)
..... ..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.++.+ +.
T Consensus 114 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 193 (306)
T 2z66_A 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193 (306)
T ss_dssp ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH
Confidence 88765 567888999999999999888877778899999999999998876 4667788899999999999999966 56
Q ss_pred chhccCCCcEEEcCCCccccccc-cccCCCCCCeEeCCCCCCCCC-CCcccCCCccCceEeccCCCCCCc
Q 010567 417 DILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISAL-PPELGLLEPSLQALRLDGNPLRSI 484 (507)
Q Consensus 417 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~ 484 (507)
.+..+++|++|++++|.+++++. .+.++++|++|++++|+++.. +..+..++++|+.|++++|++..-
T Consensus 194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 68889999999999999998854 688899999999999998854 445555545999999999998643
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.7e-26 Score=215.71 Aligned_cols=199 Identities=22% Similarity=0.272 Sum_probs=113.7
Q ss_pred ccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCch-hhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEE
Q 010567 13 RLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLD 90 (507)
Q Consensus 13 ~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~ 90 (507)
.|+.....+.+++.++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.++.+ +..+..+++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 45555556666666666665442 356666666666665544 566666666666666666654 23466666666666
Q ss_pred cCCCcccccchhhhcCccccceeecCCcccccccc--cccCCCcccEEeccCC-ccccC-CCCCcCCCCCcEEEcCCCCC
Q 010567 91 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQN-RILSI-PSSISGCCSLAEFYMGNNAL 166 (507)
Q Consensus 91 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~i~~l-~~~~~~~~~L~~L~l~~~~~ 166 (507)
+++|+++.++...+.++++|++|++++|.+..++. .+..+++|++|++++| .+..+ +..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666666666556666666666666666665554 4556666666666665 34443 33455666666666666665
Q ss_pred ccC-CccccCCCCCCEEEcCCCcccccchhhhc--cccCeEECCCCCCCC
Q 010567 167 SAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSG 213 (507)
Q Consensus 167 ~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~ 213 (507)
+.+ |..+..+++|++|++++|++..++..... .+|+++++++|.+++
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 533 45555566666666666655544433221 124444444444443
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.2e-25 Score=209.90 Aligned_cols=225 Identities=18% Similarity=0.227 Sum_probs=198.7
Q ss_pred ccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcC
Q 010567 13 RLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 92 (507)
Q Consensus 13 ~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 92 (507)
..++++.|+++++.+..+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccc-ccchhh--------hcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCC
Q 010567 93 GNKLT-VLSNNL--------IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 163 (507)
Q Consensus 93 ~~~l~-~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~ 163 (507)
+|.+. .++... +.++++|++|++++|.++.+|..+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 97654 444331 345999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc-cCCccccCCCCCCEEEcCCCccc-ccchhhhccc-cCeEECCCCCCCC-CCccccCCCCccEEEccCCccccc
Q 010567 164 NALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTL 237 (507)
Q Consensus 164 ~~~~-~l~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~-L~~l~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~ 237 (507)
|.+. .+|..++.+++|++|++++|.+. .++....... |++|++++|.+.+ +|..++.+++++.+++..+.+..+
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 8766 77888999999999999998765 4554544444 9999999987666 999999999999999987765443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=7.4e-26 Score=214.35 Aligned_cols=272 Identities=20% Similarity=0.216 Sum_probs=196.1
Q ss_pred CCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCcccccchhh-hc-cccCeEECCCCCCCCCC-ccccCCCCccEEEc
Q 010567 153 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQ-LRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLL 229 (507)
Q Consensus 153 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~-~~L~~l~l~~~~~~~~~-~~l~~l~~L~~L~l 229 (507)
|+.....+.+++.++.+|..+. ++|++|++++|++..++... .. .+|++|++++|.+++++ ..+.++++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 4444556666777777766544 36777777777666655422 12 22666666666665532 33555566666666
Q ss_pred cCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCCChh-hhcCCCccE
Q 010567 230 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITK 308 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~ 308 (507)
++|.+ ..++.. +..+++|++
T Consensus 108 s~n~l-----------------------------------------------------------~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 108 SYNYL-----------------------------------------------------------SNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CSSCC-----------------------------------------------------------SSCCHHHHTTCTTCSE
T ss_pred CCCcC-----------------------------------------------------------CcCCHhHhCCCccCCE
Confidence 55544 445544 556788889
Q ss_pred EEcCCCccCcCCc--cccCCCcCcEEecccC-cccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCc
Q 010567 309 LDLSRNSIQELPP--ELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 385 (507)
Q Consensus 309 L~l~~~~~~~i~~--~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 385 (507)
|++++|.+..+|. .+..+++|++|++++| .+..+.+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 9999888888876 5788889999999888 466676667788889999999998888887777888899999999888
Q ss_pred ccCCCCCCCCCCCCcCcEEEcccccCcccccc----hhccCCCcEEEcCCCccc-----cccccccCCCCCCeEeCCCCC
Q 010567 386 IASLPENPPFSSLPHLQELYLRRMQLREAPTD----ILRLQQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNN 456 (507)
Q Consensus 386 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~----~~~~~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~ 456 (507)
.+.......+..+++|+.|++++|.++.++.. ....+.++.++++++.+. .+|+.+.++++|++|++++|+
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 76544333344578899999999988854322 234567888888888765 468888999999999999999
Q ss_pred CCCCCCcccCCCccCceEeccCCCCCCcc
Q 010567 457 ISALPPELGLLEPSLQALRLDGNPLRSIR 485 (507)
Q Consensus 457 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 485 (507)
++.+|+.++..+++|+.|++++|++..--
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 99999887555599999999999987654
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6.4e-29 Score=253.00 Aligned_cols=224 Identities=17% Similarity=0.198 Sum_probs=139.8
Q ss_pred HhhcccCCCCEEEcCCCc-cccc---C------------ccccCCCcccEEeCCCCCCC-CCchhhh-cccCCCeEEcCC
Q 010567 9 YVFDRLHMLKSLDVSFNS-IMKI---P------------DEIGSATALVKFDCSSNQLK-ELPSSLG-RCLNLSDFKASN 70 (507)
Q Consensus 9 ~~~~~~~~L~~L~l~~~~-i~~~---~------------~~~~~~~~L~~L~l~~~~l~-~~~~~~~-~~~~L~~L~l~~ 70 (507)
..+.++++|+.|+++++. +.++ | .....+++|++|+++++.++ ..+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 456788889999988874 2221 1 11345778888888888776 2233343 578888888888
Q ss_pred C-cCcc--CCccccCCCCCcEEEcCCCcccccchhhh----cCccccceeecCCcc--cc--cccccccCCCcccEEecc
Q 010567 71 N-CITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLI----ASWTMLTELIASKNL--LN--GMPETIGSLSRLIRLDLH 139 (507)
Q Consensus 71 ~-~~~~--l~~~~~~~~~L~~L~l~~~~l~~~~~~~~----~~~~~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l~ 139 (507)
| .++. ++..+..+++|++|++++|.+++.....+ ..+++|++|+++++. +. .++.....+++|++|+++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 8 5553 44455578888888888887765443323 366788888888775 21 122233456788888888
Q ss_pred CC-ccccCCCCCcCCCCCcEEEcCCCC-------CccCCccccCCCCCCEE-EcCCCcccccchhhh-ccccCeEECCCC
Q 010567 140 QN-RILSIPSSISGCCSLAEFYMGNNA-------LSALPAELGKLSKLGTL-DLHSNQLKEYCVEAC-QLRLSVLDLSNN 209 (507)
Q Consensus 140 ~~-~i~~l~~~~~~~~~L~~L~l~~~~-------~~~l~~~l~~~~~L~~L-~l~~~~~~~~~~~~~-~~~L~~l~l~~~ 209 (507)
+| .+..++..+..+++|++|.++.+. +..++..+..+++|+.+ .+.......++.... ..+|++|++++|
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 299 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTC
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCC
Confidence 77 444555566677888888866553 22344456777778877 343332223332222 234777777777
Q ss_pred CCCC--CCccccCCCCccEEEccCC
Q 010567 210 SLSG--LPPEIGKMTTLRKLLLTGN 232 (507)
Q Consensus 210 ~~~~--~~~~l~~l~~L~~L~l~~~ 232 (507)
.+++ +...+..+++|+.|++.++
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 7554 2223556777777777765
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=5.4e-26 Score=210.98 Aligned_cols=182 Identities=25% Similarity=0.345 Sum_probs=113.7
Q ss_pred CChhhhcCCCccEEEcCCCccC-cCCccccCCCcCcEEecccCcccCCchHHhhcCC-CCCEEEccCCCCCCCCccccCC
Q 010567 296 IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLS-SLSCLKLDNNPLRQVPSDGFKD 373 (507)
Q Consensus 296 ~~~~~~~~~~L~~L~l~~~~~~-~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~ 373 (507)
+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..+..
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 3444455556666666666655 3555566666666666666666544344445555 6666666666665444444555
Q ss_pred CCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCccc-cccccccCCCCCCeEeC
Q 010567 374 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDL 452 (507)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l 452 (507)
++ |+.|++++|.+.+..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.++ .+|..+.++++|++|++
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 55 66666666666655556666667777777777766644444566677777777777776 56667777777777777
Q ss_pred CCCCCC-CCCCcccCCCccCceEeccCCC
Q 010567 453 SDNNIS-ALPPELGLLEPSLQALRLDGNP 480 (507)
Q Consensus 453 ~~~~l~-~~~~~~~~~~~~L~~L~l~~n~ 480 (507)
++|+++ .+|.. ..+ ++|+.+++++|+
T Consensus 276 s~N~l~~~ip~~-~~l-~~L~~l~l~~N~ 302 (313)
T 1ogq_A 276 SFNNLCGEIPQG-GNL-QRFDVSAYANNK 302 (313)
T ss_dssp CSSEEEEECCCS-TTG-GGSCGGGTCSSS
T ss_pred cCCcccccCCCC-ccc-cccChHHhcCCC
Confidence 777766 45543 333 677777777776
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.3e-27 Score=243.30 Aligned_cols=389 Identities=13% Similarity=0.059 Sum_probs=254.2
Q ss_pred HhhcccCCCCEEEcCCCcccc-cCccccC-CCc-ccEEeCCCCC-CC--CCchhhhcccCCCeEEcCCCcCccC-----C
Q 010567 9 YVFDRLHMLKSLDVSFNSIMK-IPDEIGS-ATA-LVKFDCSSNQ-LK--ELPSSLGRCLNLSDFKASNNCITSL-----P 77 (507)
Q Consensus 9 ~~~~~~~~L~~L~l~~~~i~~-~~~~~~~-~~~-L~~L~l~~~~-l~--~~~~~~~~~~~L~~L~l~~~~~~~l-----~ 77 (507)
.....+++|+.|+++++.+.. .+..+.. +++ |++|++++|. +. .++.....+++|++|++++|.++.. +
T Consensus 106 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 185 (592)
T 3ogk_B 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH 185 (592)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH
T ss_pred HHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH
Confidence 344589999999999998863 3444444 445 9999999986 32 3444556899999999999987643 3
Q ss_pred ccccCCCCCcEEEcCCCcccccc----hhhhcCccccceeecCCcccccccccccCCCcccEEeccCCccc----cCCCC
Q 010567 78 EDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL----SIPSS 149 (507)
Q Consensus 78 ~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~----~l~~~ 149 (507)
.....+++|++|+++++.++.+. ...+.++++|++|+++++.+..++..+..+++|++|+++..... ..+..
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 34567899999999999887332 33467899999999999999888888999999999999854322 34456
Q ss_pred CcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCcccccchh--h-hccccCeEECCCCCCCC--CCccccCCCCc
Q 010567 150 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE--A-CQLRLSVLDLSNNSLSG--LPPEIGKMTTL 224 (507)
Q Consensus 150 ~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~--~-~~~~L~~l~l~~~~~~~--~~~~l~~l~~L 224 (507)
+..+++|+.|.+.++....+|..+..+++|++|++++|.+...... . ...+|++|+++ +.+.+ ++.....+++|
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 7888999999999877677888888899999999999987643221 2 22349999998 43333 33345678999
Q ss_pred cEEEccC----------C-ccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCC
Q 010567 225 RKLLLTG----------N-PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 293 (507)
Q Consensus 225 ~~L~l~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 293 (507)
++|++++ + .++. .
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~-----------~--------------------------------------------- 368 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQ-----------R--------------------------------------------- 368 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCH-----------H---------------------------------------------
T ss_pred CEEEeecCccccccccccCccCH-----------H---------------------------------------------
Confidence 9999983 1 1110 0
Q ss_pred CCCChhhhcCCCccEEEcCCCccCc-CCcccc-CCCcCcEEecc----cCcccCC-----chHHhhcCCCCCEEEccCCC
Q 010567 294 SAIPSEIWEAGEITKLDLSRNSIQE-LPPELS-SCASLQTLILS----RNKIKDW-----PDAILTSLSSLSCLKLDNNP 362 (507)
Q Consensus 294 ~~~~~~~~~~~~L~~L~l~~~~~~~-i~~~~~-~~~~L~~L~l~----~~~l~~~-----~~~~~~~~~~L~~L~l~~~~ 362 (507)
.++.....+++|++|++..+.+++ .+..+. .+++|++|+++ .+.+++. ....+..+++|+.|+++.|.
T Consensus 369 -~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 369 -GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp -HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred -HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 001112234556666665444443 111222 25566666664 3344443 12224556777777776543
Q ss_pred --CCCCCcccc-CCCCCceEEEccCcccCCCC-CCCCCCCCcCcEEEcccccCc--ccccchhccCCCcEEEcCCCcccc
Q 010567 363 --LRQVPSDGF-KDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNSLQS 436 (507)
Q Consensus 363 --i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~l~~ 436 (507)
++......+ ..+++|+.|++++|.+++.. +..+..+++|++|++++|.++ .++.....+++|+.|++++|+++.
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 332221112 23667777777776655422 122356677888888888776 344455677888888888887663
Q ss_pred c--cccccCCCCCCeEeCCCC
Q 010567 437 I--PEGFKNLTSLTELDLSDN 455 (507)
Q Consensus 437 l--~~~~~~l~~L~~L~l~~~ 455 (507)
- ......++.+....+..+
T Consensus 528 ~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 528 TGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp TCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHhCCCcEEEEecCc
Confidence 2 222345666665555543
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=3.6e-25 Score=205.36 Aligned_cols=112 Identities=26% Similarity=0.331 Sum_probs=68.0
Q ss_pred hcCCCccEEEcCCCccCc--CCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCce
Q 010567 301 WEAGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 378 (507)
Q Consensus 301 ~~~~~L~~L~l~~~~~~~--i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~ 378 (507)
..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++++...+..+++|+
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence 345566666666666554 455566666666666666666665555556666666666666666666555566666666
Q ss_pred EEEccCcccCCCCCCCCCCCC-cCcEEEcccccCc
Q 010567 379 ILDLSYNIASLPENPPFSSLP-HLQELYLRRMQLR 412 (507)
Q Consensus 379 ~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~ 412 (507)
.|++++|.+.+..+..+..++ +|++|++++|.+.
T Consensus 227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred EeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 666666666555555555553 5666666666554
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=4.7e-25 Score=204.63 Aligned_cols=174 Identities=25% Similarity=0.373 Sum_probs=91.6
Q ss_pred CcccEEeCCCCCCC---CCchhhhcccCCCeEEcCC-CcCc-cCCccccCCCCCcEEEcCCCcccccchhhhcCccccce
Q 010567 38 TALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASN-NCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 112 (507)
Q Consensus 38 ~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 112 (507)
.+++.|+++++.+. .+|..+.++++|++|++++ |.+. .+|..+..+++|++|++++|+++...+..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 35556666665555 3555555556666666653 4444 45555555555555555555555333333555555555
Q ss_pred eecCCcccc-cccccccCCCcccEEeccCCccc-cCCCCCcCCC-CCcEEEcCCCCCc-cCCccccCCCCCCEEEcCCCc
Q 010567 113 LIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCC-SLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQ 188 (507)
Q Consensus 113 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~-~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~ 188 (507)
|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|.++ .+|..+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~----------- 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----------- 198 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-----------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-----------
Confidence 555555554 34444555555555555555554 4444444444 4555555554444 3344444433
Q ss_pred ccccchhhhccccCeEECCCCCCCC-CCccccCCCCccEEEccCCcc
Q 010567 189 LKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL 234 (507)
Q Consensus 189 ~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 234 (507)
|+++++++|.+++ .+..+..+++|+.|++++|.+
T Consensus 199 ------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 199 ------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 4444444444443 334456666777777776655
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=5.3e-24 Score=208.48 Aligned_cols=242 Identities=24% Similarity=0.311 Sum_probs=185.2
Q ss_pred CEEEcCCCcccccchhhhccccCeEECCCCCCCCC-CccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCC
Q 010567 180 GTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 258 (507)
Q Consensus 180 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (507)
..++.++.++..+|... ...+++|++++|.++++ +..+..+++|+.|++++|.++.++
T Consensus 57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-------------------- 115 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-------------------- 115 (452)
T ss_dssp CEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------------
T ss_pred cEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC--------------------
Confidence 34444444444444321 12355666666666553 345777788888888877664322
Q ss_pred CCCccccccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCcc-ccCCCcCcEEecccC
Q 010567 259 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRN 337 (507)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L~l~~~ 337 (507)
+..+..+++|++|++++|.+..++.. +..+++|++|++++|
T Consensus 116 --------------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 116 --------------------------------------VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp --------------------------------------TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred --------------------------------------hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 23344567888888888888887655 778889999999999
Q ss_pred cccCCchHHhhcCCCCCEEEccC-CCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCccc-c
Q 010567 338 KIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-P 415 (507)
Q Consensus 338 ~l~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~ 415 (507)
.+..++...|..+++|+.|++++ +.+..++...+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+..+ +
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECG
T ss_pred CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCc
Confidence 88888877788899999999988 456667777788899999999999988765 3478889999999999999866 5
Q ss_pred cchhccCCCcEEEcCCCccccc-cccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCC
Q 010567 416 TDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 482 (507)
Q Consensus 416 ~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 482 (507)
..+..+++|+.|++++|.++.+ +..+.++++|++|++++|+++.++...+..+++|+.|++++|++.
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 6688899999999999999877 567889999999999999999888877665699999999999875
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=7.4e-24 Score=206.72 Aligned_cols=181 Identities=27% Similarity=0.375 Sum_probs=138.9
Q ss_pred hhcCCCccEEEcCCCccCcCCc-cccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccC-CCCCCCCccccCCCCCc
Q 010567 300 IWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPML 377 (507)
Q Consensus 300 ~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L 377 (507)
+..+++|++|++++|.+..++. .+..+++|++|++++|.+..++...|..+++|++|++++ +.+..++...|..+++|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 3446677777777777777665 377778888888888888777777777788888888887 45556666667888888
Q ss_pred eEEEccCcccCCCCCCCCCCCCcCcEEEcccccCccc-ccchhccCCCcEEEcCCCccccc-cccccCCCCCCeEeCCCC
Q 010567 378 QILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDN 455 (507)
Q Consensus 378 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~ 455 (507)
+.|++++|.+.... .+..+++|+.|++++|.++.+ +..+..+++|+.|++++|+++.+ +..+.++++|++|++++|
T Consensus 188 ~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 188 RYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred CeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 88888888776543 467788888888888888865 55677888888888888888876 456788888888888888
Q ss_pred CCCCCCCcccCCCccCceEeccCCCCC
Q 010567 456 NISALPPELGLLEPSLQALRLDGNPLR 482 (507)
Q Consensus 456 ~l~~~~~~~~~~~~~L~~L~l~~n~~~ 482 (507)
+++.++...+..+++|+.|++++|++.
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCccChhHhccccCCCEEEcCCCCcc
Confidence 888887766555588888888888874
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=4.5e-24 Score=199.13 Aligned_cols=236 Identities=25% Similarity=0.341 Sum_probs=148.4
Q ss_pred CCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCcccccchhhhccccCeEECCCC
Q 010567 130 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 209 (507)
Q Consensus 130 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~ 209 (507)
..+++.|+++++.+..+|..+..+++|++|++++|.++.+|..++.+++|++|++++|.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~--------------------- 138 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP--------------------- 138 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC---------------------
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc---------------------
Confidence 35666777777666666666666666666666666666666666666666666555554
Q ss_pred CCCCCCccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhccccccceEEec
Q 010567 210 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 289 (507)
Q Consensus 210 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 289 (507)
++.+|..+..+++|+.|++++|....
T Consensus 139 -l~~lp~~l~~l~~L~~L~L~~n~~~~----------------------------------------------------- 164 (328)
T 4fcg_A 139 -LRALPASIASLNRLRELSIRACPELT----------------------------------------------------- 164 (328)
T ss_dssp -CCCCCGGGGGCTTCCEEEEEEETTCC-----------------------------------------------------
T ss_pred -cccCcHHHhcCcCCCEEECCCCCCcc-----------------------------------------------------
Confidence 44456667777888888887764321
Q ss_pred CCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCcc
Q 010567 290 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 369 (507)
Q Consensus 290 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 369 (507)
.+|..+.. . .++..+..+++|++|++++|.++.++.. +..+++|++|++++|.+++++..
T Consensus 165 -----~~p~~~~~------~--------~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~~ 224 (328)
T 4fcg_A 165 -----ELPEPLAS------T--------DASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPA 224 (328)
T ss_dssp -----CCCSCSEE------E--------C-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCCGG
T ss_pred -----ccChhHhh------c--------cchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCchh
Confidence 11111110 0 0111234455566666666665544332 45566666666666666665543
Q ss_pred ccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCc-ccccchhccCCCcEEEcCCCccc-cccccccCCCCC
Q 010567 370 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSL 447 (507)
Q Consensus 370 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~l~~L 447 (507)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|+.+.++++|
T Consensus 225 -l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 225 -IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp -GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred -hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 666667777777776666666666777777778888777554 67777778888888888887644 678888888888
Q ss_pred CeEeCCCCCCCCCC
Q 010567 448 TELDLSDNNISALP 461 (507)
Q Consensus 448 ~~L~l~~~~l~~~~ 461 (507)
+.+++..+.+..+.
T Consensus 304 ~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 304 CIILVPPHLQAQLD 317 (328)
T ss_dssp CEEECCGGGSCC--
T ss_pred eEEeCCHHHHHHHh
Confidence 88888777555443
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=1.2e-23 Score=192.93 Aligned_cols=182 Identities=30% Similarity=0.387 Sum_probs=124.1
Q ss_pred hcCCCccEEEcCCCccCcC-CccccCCCcCcEEecccCc-ccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCce
Q 010567 301 WEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNK-IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 378 (507)
Q Consensus 301 ~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~ 378 (507)
..+++|++|++++|.+.++ |..+..+++|++|++++|. +..+.+..+..+++|++|++++|.++.+++..+..+++|+
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 3455666666666666654 4456666777777777765 6666555566677777777777777766666667777777
Q ss_pred EEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCccccc-cccccCCCCCCeEeCCCCC
Q 010567 379 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNN 456 (507)
Q Consensus 379 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~ 456 (507)
.|++++|.+....+..+..+++|+.|++++|+++.++.. +..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 777777777666666667777777777777777766553 66677777777777777755 5667777777777777777
Q ss_pred CCCCCCcccCCCccCceEeccCCCCC
Q 010567 457 ISALPPELGLLEPSLQALRLDGNPLR 482 (507)
Q Consensus 457 l~~~~~~~~~~~~~L~~L~l~~n~~~ 482 (507)
++.+++.....+++|+.|++++|++.
T Consensus 213 l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 213 LSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCcCCHHHcccCcccCEEeccCCCcc
Confidence 77666553333477777777777765
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=2.4e-23 Score=203.08 Aligned_cols=204 Identities=25% Similarity=0.332 Sum_probs=156.3
Q ss_pred cCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCC-ccccCCCCCcEEEcCCCcccccchhhhcCcc
Q 010567 30 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWT 108 (507)
Q Consensus 30 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 108 (507)
.|.........+.+++++..++.+|..+. ++++.|++++|.++.++ ..|..+++|++|++++|.+..+....|.+++
T Consensus 35 Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 35 CPSVCSCSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112 (440)
T ss_dssp CCSSSEECTTSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred CCCCCEeCCCCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence 34333333356789999999999988665 58999999999998765 6788999999999999999998888899999
Q ss_pred ccceeecCCcccccccc-cccCCCcccEEeccCCccccCCC-CCcCCCCCcEEEcCCC-CCccCCc-cccCCCCCCEEEc
Q 010567 109 MLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNN-ALSALPA-ELGKLSKLGTLDL 184 (507)
Q Consensus 109 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~-~~~~l~~-~l~~~~~L~~L~l 184 (507)
+|++|++++|.++.++. .+..+++|++|++++|.+..++. .+..+++|++|+++++ .+..++. .+..+++|++|++
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC
Confidence 99999999999988874 68888999999999999887765 6788899999999885 5555543 5778888888888
Q ss_pred CCCcccccchhhhccccCeEECCCCCCCCC-CccccCCCCccEEEccCCccc
Q 010567 185 HSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLR 235 (507)
Q Consensus 185 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 235 (507)
++|++..++......+|+.|++++|.++++ +..+..+++|+.|++++|.++
T Consensus 193 ~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 193 AMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp TTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 888877766433333466666666666663 444666666666666666553
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=7.9e-27 Score=237.56 Aligned_cols=169 Identities=11% Similarity=0.138 Sum_probs=78.6
Q ss_pred CEEEcCCCcccccCccccCCCcccEEeCCCCC-CCCC---------------chhhhcccCCCeEEcCCCcCcc-CCccc
Q 010567 18 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ-LKEL---------------PSSLGRCLNLSDFKASNNCITS-LPEDL 80 (507)
Q Consensus 18 ~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~-l~~~---------------~~~~~~~~~L~~L~l~~~~~~~-l~~~~ 80 (507)
+.++++.+........+..+++|++|+++++. +..+ +.....+++|++|++++|.++. .+..+
T Consensus 46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 34455444322222234556667777776653 1111 1112345566666666665542 11222
Q ss_pred c-CCCCCcEEEcCCC-ccccc-chhhhcCccccceeecCCccccc-----ccccccCCCcccEEeccCCc--cc--cCCC
Q 010567 81 A-DCSKMSKLDVEGN-KLTVL-SNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNR--IL--SIPS 148 (507)
Q Consensus 81 ~-~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--i~--~l~~ 148 (507)
. .+++|++|++++| .+++. ....+.++++|++|++++|.+.. ++.....+++|+.|+++++. +. .++.
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 2 4566666666665 33321 12223356666666666655432 12222345556666665554 11 1111
Q ss_pred CCcCCCCCcEEEcCCC-CCccCCccccCCCCCCEEEcCC
Q 010567 149 SISGCCSLAEFYMGNN-ALSALPAELGKLSKLGTLDLHS 186 (507)
Q Consensus 149 ~~~~~~~L~~L~l~~~-~~~~l~~~l~~~~~L~~L~l~~ 186 (507)
....+++|++|++++| .+..++..+..+++|++++++.
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 1233455566665555 3334444445555555555443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-24 Score=201.36 Aligned_cols=225 Identities=24% Similarity=0.291 Sum_probs=153.7
Q ss_pred cCeEECCCCCCCCCC-ccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhcc
Q 010567 201 LSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 279 (507)
Q Consensus 201 L~~l~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (507)
|++|++++|.+++++ ..+..+++|+.|++++|.++...
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------------------------------- 74 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL----------------------------------------- 74 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-----------------------------------------
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-----------------------------------------
Confidence 677777777776654 35677777777777777653211
Q ss_pred ccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEcc
Q 010567 280 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 359 (507)
Q Consensus 280 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 359 (507)
. +..+++|++|++++|.+.+++. .++|++|++++|.+.+.+.. .+++|++|+++
T Consensus 75 ------------------~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~ 128 (317)
T 3o53_A 75 ------------------D-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLA 128 (317)
T ss_dssp ------------------E-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECC
T ss_pred ------------------h-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECC
Confidence 0 2335567777777776665542 26677777777777665432 35677777777
Q ss_pred CCCCCCCCccccCCCCCceEEEccCcccCCCCCCCC-CCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCcccccc
Q 010567 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF-SSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP 438 (507)
Q Consensus 360 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~ 438 (507)
+|.++.+++..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.++.++... .+++|++|++++|.++.+|
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp SSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEEC
T ss_pred CCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcch
Confidence 777777766667777777777777777666554444 35677888888888877664333 4678888888888888777
Q ss_pred ccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCC-CccHHHHhhhHH
Q 010567 439 EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR-SIRRTILDRGTK 494 (507)
Q Consensus 439 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~ 494 (507)
..+..+++|++|++++|.++.+|+.+... ++|+.|++++|++. ...+..+.....
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~l-~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLVLIEKALRFS-QNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCCEECTTCCCC-TTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred hhhcccCcccEEECcCCcccchhhHhhcC-CCCCEEEccCCCccCcCHHHHHhcccc
Confidence 77778888888888888888777766554 78888888888887 444555555443
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.7e-23 Score=187.83 Aligned_cols=203 Identities=30% Similarity=0.417 Sum_probs=183.1
Q ss_pred cccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCc-cccCCCcCcEEecccCcccCCchHHhhcCCCCCEEE
Q 010567 279 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 357 (507)
Q Consensus 279 ~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 357 (507)
+..+.+.++++++.++.+|..+. +++++|+++++.+..++. .+..+++|++|++++|.++.++...|..+++|++|+
T Consensus 14 c~~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 14 CNNNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp EETTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred eCCCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 33456889999999999887554 689999999999999876 588999999999999999999888889999999999
Q ss_pred ccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCcccc
Q 010567 358 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQS 436 (507)
Q Consensus 358 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~ 436 (507)
+++|.++.++...+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.++.
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 999999999988899999999999999999998888899999999999999999988765 6789999999999999998
Q ss_pred ccc-cccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCC
Q 010567 437 IPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 437 l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 483 (507)
++. .+.++++|++|++++|+++.+++..+..+++|+.|++++|++..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 865 58899999999999999999888765555999999999999854
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=3.8e-23 Score=202.40 Aligned_cols=196 Identities=22% Similarity=0.302 Sum_probs=152.3
Q ss_pred CcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEEcCCCcccccchhhhcCccccceeecC
Q 010567 38 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 116 (507)
Q Consensus 38 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 116 (507)
...+.+++++..++.+|..+. +++++|++++|.++.+ +..|..+++|+.|++++|+++.+....|.++++|++|+++
T Consensus 54 ~~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 54 NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 346788898888998887665 5899999999998866 5678899999999999999998888889999999999999
Q ss_pred Ccccccccc-cccCCCcccEEeccCCccccCCC-CCcCCCCCcEEEcCCC-CCccCCc-cccCCCCCCEEEcCCCccccc
Q 010567 117 KNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNN-ALSALPA-ELGKLSKLGTLDLHSNQLKEY 192 (507)
Q Consensus 117 ~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~-~~~~l~~-~l~~~~~L~~L~l~~~~~~~~ 192 (507)
+|.+..++. .+..+++|++|++++|.+..++. .+.++++|+.|+++++ .+..++. .+..+++|++|++++|++..+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 999888774 47788999999999998887765 6788889999999884 5555543 477788888888888887776
Q ss_pred chhhhccccCeEECCCCCCCCC-CccccCCCCccEEEccCCccc
Q 010567 193 CVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLR 235 (507)
Q Consensus 193 ~~~~~~~~L~~l~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 235 (507)
+......+|++|++++|.++++ +..+..+++|+.|++++|.++
T Consensus 212 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 5433334477777777776664 444666667777777666553
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=8.1e-25 Score=203.63 Aligned_cols=210 Identities=21% Similarity=0.190 Sum_probs=129.7
Q ss_pred CCCEEEcCCCcccccC-ccccCCCcccEEeCCCCCCCCCc-hhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcCC
Q 010567 16 MLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 93 (507)
Q Consensus 16 ~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 93 (507)
.++..+++.+.+...+ ..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 3555566666665332 33456677888888888877664 467778888888888887776543 77778888888888
Q ss_pred CcccccchhhhcCccccceeecCCcccccccccccCCCcccEEeccCCccccCC-CCCcCCCCCcEEEcCCCCCccC-Cc
Q 010567 94 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PA 171 (507)
Q Consensus 94 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~l-~~ 171 (507)
|+++.++. .++|++|++++|.+..++.. .+++|+.|++++|.+..++ ..+..+++|++|++++|.++.+ +.
T Consensus 90 n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NYVQELLV-----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SEEEEEEE-----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred CccccccC-----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 87776542 36777777777777665432 3566777777777776553 3556667777777777766643 22
Q ss_pred cc-cCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCc
Q 010567 172 EL-GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 233 (507)
Q Consensus 172 ~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~ 233 (507)
.+ ..+++|++|++++|++..++......+|++|++++|.+++++..+..+++|+.|++++|.
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred HHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc
Confidence 23 345666666666666655543333233455555555444444444444444444444443
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.3e-23 Score=192.66 Aligned_cols=136 Identities=31% Similarity=0.439 Sum_probs=90.1
Q ss_pred hhcCCCccEEEcCCCccCcC-CccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCce
Q 010567 300 IWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 378 (507)
Q Consensus 300 ~~~~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~ 378 (507)
+..+++|++|++++|.+..+ +..+..+++|++|++++|.+...+...+..+++|++|++++|.++.++...+..+++|+
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 33455666666666666654 33456666777777777766666665566667777777777777666666666677777
Q ss_pred EEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCccc
Q 010567 379 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 435 (507)
Q Consensus 379 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~ 435 (507)
.|++++|.+.+..+..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 777777766666666666677777777777777665543 566677777777777655
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.3e-25 Score=208.61 Aligned_cols=178 Identities=26% Similarity=0.318 Sum_probs=94.5
Q ss_pred CCCccEEEcCCCccCcCCccccCC-----CcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCC---C-ccccCC
Q 010567 303 AGEITKLDLSRNSIQELPPELSSC-----ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV---P-SDGFKD 373 (507)
Q Consensus 303 ~~~L~~L~l~~~~~~~i~~~~~~~-----~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~---~-~~~~~~ 373 (507)
+++|+.|++++|.+.++|..+..+ ++|++|++++|.+.+.++..+..+++|++|++++|.+.+. + ...+..
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 444444555544444444333333 4555555555555554444444555555555555544321 1 111244
Q ss_pred CCCceEEEccCcccCCCC---CCCCCCCCcCcEEEcccccCcccc--cchhccCCCcEEEcCCCccccccccccCCCCCC
Q 010567 374 IPMLQILDLSYNIASLPE---NPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIPEGFKNLTSLT 448 (507)
Q Consensus 374 ~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~i~~l~--~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~ 448 (507)
+++|+.|++++|.+.... ...+..+++|+.|++++|.+...+ ..+..+++|++|++++|.++++|..+. ++|+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~ 277 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLS 277 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCce
Confidence 555555555555444211 111234456666666666665433 233445667777777777776666554 6777
Q ss_pred eEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCc
Q 010567 449 ELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 484 (507)
Q Consensus 449 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 484 (507)
+|++++|+++.+|. +..+ ++|+.|++++|+++..
T Consensus 278 ~L~Ls~N~l~~~p~-~~~l-~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 278 VLDLSYNRLDRNPS-PDEL-PQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEECCSSCCCSCCC-TTTS-CEEEEEECTTCTTTCC
T ss_pred EEECCCCCCCCChh-HhhC-CCCCEEeccCCCCCCC
Confidence 77777777776655 4444 7777777777776653
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=2.9e-24 Score=199.41 Aligned_cols=152 Identities=15% Similarity=0.132 Sum_probs=84.7
Q ss_pred CCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCc--cCCcccc-------CCCCCcEEEcCCCcccc-cchhhh-
Q 010567 36 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT--SLPEDLA-------DCSKMSKLDVEGNKLTV-LSNNLI- 104 (507)
Q Consensus 36 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~~-------~~~~L~~L~l~~~~l~~-~~~~~~- 104 (507)
..++|+.+++++|.+ .+|..+... |++|++++|.+. .++..+. .+++|++|++++|+++. ++...+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 445566666666666 666555543 666666666654 3443333 46666666666666653 333221
Q ss_pred cCccccceeecCCcccccccccccCC-----CcccEEeccCCccccCC-CCCcCCCCCcEEEcCCCCCcc---CCccc--
Q 010567 105 ASWTMLTELIASKNLLNGMPETIGSL-----SRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSA---LPAEL-- 173 (507)
Q Consensus 105 ~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~~~~---l~~~l-- 173 (507)
..+++|++|++++|.+..+|..+..+ ++|++|++++|.+..++ ..+..+++|++|++++|.+.. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 56666666666666665555444443 56666666666666544 455566666666666665431 12222
Q ss_pred cCCCCCCEEEcCCCccc
Q 010567 174 GKLSKLGTLDLHSNQLK 190 (507)
Q Consensus 174 ~~~~~L~~L~l~~~~~~ 190 (507)
..+++|++|++++|++.
T Consensus 198 ~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGME 214 (312)
T ss_dssp TSCTTCCEEECTTSCCC
T ss_pred ccCCCCCEEECCCCcCc
Confidence 45556666666666555
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.1e-23 Score=205.20 Aligned_cols=167 Identities=20% Similarity=0.201 Sum_probs=85.0
Q ss_pred CccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccC-CCCCceEEEcc
Q 010567 305 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK-DIPMLQILDLS 383 (507)
Q Consensus 305 ~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~ 383 (507)
+|+.|++++|.+..++. ..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.++..+. .+++|+.|+++
T Consensus 100 ~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp TCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 44444444444444332 1234455555555555544444444455555555555555544333332 44555555555
Q ss_pred CcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCccccccccccCCCCCCeEeCCCCCCC--CCC
Q 010567 384 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS--ALP 461 (507)
Q Consensus 384 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~--~~~ 461 (507)
+|.+++..+ ...+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|
T Consensus 178 ~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 178 YNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp TSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred CCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 554444321 2235566666666666665555555666666666666666666655666666666666666555 333
Q ss_pred CcccCCCccCceEec
Q 010567 462 PELGLLEPSLQALRL 476 (507)
Q Consensus 462 ~~~~~~~~~L~~L~l 476 (507)
..+..+ +.|+.+++
T Consensus 256 ~~~~~l-~~L~~l~~ 269 (487)
T 3oja_A 256 DFFSKN-QRVQTVAK 269 (487)
T ss_dssp HHHTTC-HHHHHHHH
T ss_pred HHHHhC-CCCcEEec
Confidence 333332 44554444
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1e-22 Score=200.29 Aligned_cols=226 Identities=24% Similarity=0.288 Sum_probs=188.8
Q ss_pred ccCeEECCCCCCCCCC-ccccCCCCccEEEccCCccccccccccCCCCHHHHHHHHhcCCCCCccccccchhhhhhhhhc
Q 010567 200 RLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR 278 (507)
Q Consensus 200 ~L~~l~l~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (507)
+|++|++++|.+++++ ..+..+++|+.|++++|.++...
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------------------------------------- 74 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---------------------------------------- 74 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE----------------------------------------
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc----------------------------------------
Confidence 4777888888777754 46888899999999888764211
Q ss_pred cccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEc
Q 010567 279 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 358 (507)
Q Consensus 279 ~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 358 (507)
. +..+++|+.|++++|.+.++|. .++|++|++++|.+.+.+.. .+++|+.|++
T Consensus 75 -------------------~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L 127 (487)
T 3oja_A 75 -------------------D-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYL 127 (487)
T ss_dssp -------------------E-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEEC
T ss_pred -------------------c-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEEC
Confidence 1 3456789999999999887764 38999999999999987653 4789999999
Q ss_pred cCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCC-CCCcCcEEEcccccCcccccchhccCCCcEEEcCCCccccc
Q 010567 359 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFS-SLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI 437 (507)
Q Consensus 359 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l 437 (507)
++|.++++++..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.++.++.. ..+++|+.|++++|.++.+
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp CSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEE
T ss_pred CCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCC
Confidence 99999999887899999999999999999887776665 789999999999999987543 3589999999999999999
Q ss_pred cccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCC-CccHHHHhhhHH
Q 010567 438 PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR-SIRRTILDRGTK 494 (507)
Q Consensus 438 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~ 494 (507)
|..+..+++|+.|++++|.++.+|..+..+ ++|+.|++++|++. ...+..+.....
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l-~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFS-QNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCCEECTTCCCC-TTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred CHhHcCCCCccEEEecCCcCcccchhhccC-CCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 888999999999999999999999887666 99999999999998 333444554443
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.1e-22 Score=184.23 Aligned_cols=198 Identities=24% Similarity=0.339 Sum_probs=129.3
Q ss_pred cCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcCCCcccccchhhhcCccccceee
Q 010567 35 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 114 (507)
Q Consensus 35 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 114 (507)
+.+++|++|+++++.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|+++.++ .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEE
Confidence 34556666666666666655 35666666666666666666654 666666666666666666654 266666666666
Q ss_pred cCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCcccccch
Q 010567 115 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 194 (507)
Q Consensus 115 l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~ 194 (507)
+++|.+..++. +..+++|+.|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|++.+++.
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh
Confidence 66666665543 5666666677776666665543 5666677777777776666654 6666777777777777766655
Q ss_pred hhhccccCeEECCCCCCCCCCccccCCCCccEEEccCCcccccccc
Q 010567 195 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSS 240 (507)
Q Consensus 195 ~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 240 (507)
.....+|++|++++|.+++++. +..+++|+.|++++|+++..+..
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEE
T ss_pred hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCee
Confidence 3333347777777777777653 67778888888888877665543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=7.9e-22 Score=179.88 Aligned_cols=216 Identities=26% Similarity=0.351 Sum_probs=181.8
Q ss_pred CEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCch-hhhcccCCCeEEcCCCcCccCCc-cccCCCCCcEEEcCCCc
Q 010567 18 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNK 95 (507)
Q Consensus 18 ~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~ 95 (507)
...+..+..+..+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.++.++. .+..+++|++|++++|+
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 345666667777777553 579999999999997765 78889999999999999987754 68889999999999999
Q ss_pred ccccchhhhcCccccceeecCCcccccccc-cccCCCcccEEeccCCcccc--CCCCCcCCCCCcEEEcCCCCCccCC-c
Q 010567 96 LTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAEFYMGNNALSALP-A 171 (507)
Q Consensus 96 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~l~~~~~~~l~-~ 171 (507)
++.++...+.++++|++|++++|.+..++. .+..+++|++|++++|.+.. +|..+..+++|++|++++|.++.++ .
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 998888889999999999999999887764 68889999999999999886 6788999999999999999998664 4
Q ss_pred cccCCCCCC----EEEcCCCcccccchhhhcc-ccCeEECCCCCCCCCCcc-ccCCCCccEEEccCCccc
Q 010567 172 ELGKLSKLG----TLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLR 235 (507)
Q Consensus 172 ~l~~~~~L~----~L~l~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~ 235 (507)
.+..+.+|+ ++++++|++..++...... +|+++++++|.+++++.. +..+++|+.|++++|++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 555555666 8999999999887765544 499999999999998765 688999999999999885
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=6.7e-22 Score=180.34 Aligned_cols=203 Identities=29% Similarity=0.317 Sum_probs=178.7
Q ss_pred cccceEEecCCCCCCCCh-hhhcCCCccEEEcCCCccCcCCc-cccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEc
Q 010567 281 VTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 358 (507)
Q Consensus 281 ~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 358 (507)
.+++.|+++++.+..++. .+..+++|++|++++|.+..++. .+..+++|++|++++|.+.......+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 468999999999987765 67788999999999999998765 5889999999999999999988888899999999999
Q ss_pred cCCCCCCCCccccCCCCCceEEEccCcccCCC-CCCCCCCCCcCcEEEcccccCcccc-cchhccCCCc----EEEcCCC
Q 010567 359 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLP-ENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLR----ILDLSQN 432 (507)
Q Consensus 359 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~----~L~l~~~ 432 (507)
++|.+..++...+..+++|+.|++++|.+... .+..+..+++|+.|++++|+++.++ ..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999998887799999999999999998875 3778899999999999999999765 4566677777 9999999
Q ss_pred ccccccccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCC
Q 010567 433 SLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 433 ~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 483 (507)
.++.++.......+|++|++++|+++.+++..+..+++|+.|++++|++..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 999997766666799999999999999988776656999999999999874
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.2e-21 Score=177.45 Aligned_cols=197 Identities=28% Similarity=0.405 Sum_probs=177.2
Q ss_pred cccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCC-ccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEcc
Q 010567 281 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 359 (507)
Q Consensus 281 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 359 (507)
.+++.++++++.++.+|..+. ++++.|++++|.+..++ ..+..+++|++|++++|.++.++.. ..+++|++|+++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 567899999999999987664 68999999999999864 5688999999999999999887653 679999999999
Q ss_pred CCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCcccccc
Q 010567 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP 438 (507)
Q Consensus 360 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~l~ 438 (507)
+|.++.++.. +..+++|+.|++++|.++...+..+..+++|+.|++++|+++.++.. +..+++|+.|++++|+++++|
T Consensus 86 ~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 86 HNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp SSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 9999988764 78999999999999999998888899999999999999999988765 568999999999999999997
Q ss_pred cc-ccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCC
Q 010567 439 EG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 439 ~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 483 (507)
.. +.++++|++|++++|+++.+|..++.. ++|+.+++++|++..
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~-~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CCCSEEECCSCCBCC
T ss_pred HHHhcCcCCCCEEECCCCcCCccChhhccc-ccCCeEEeCCCCccC
Confidence 65 688999999999999999999998887 899999999999864
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.3e-21 Score=180.95 Aligned_cols=200 Identities=18% Similarity=0.296 Sum_probs=179.9
Q ss_pred hcccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEE
Q 010567 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 90 (507)
Q Consensus 11 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 90 (507)
++++++|+.|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 457899999999999999887 58899999999999999999987 999999999999999999885 788999999999
Q ss_pred cCCCcccccchhhhcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCC
Q 010567 91 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 170 (507)
Q Consensus 91 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~ 170 (507)
+++|+++.++. +..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++
T Consensus 114 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcCh
Confidence 99999998875 8999999999999999988875 8889999999999999998766 889999999999999999886
Q ss_pred ccccCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCCCCccc
Q 010567 171 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI 218 (507)
Q Consensus 171 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l 218 (507)
. +..+++|++|++++|++.+++......+|+.+++++|.++..|..+
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred h-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecCCeee
Confidence 5 8899999999999999998876444445999999999998866543
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.1e-20 Score=171.41 Aligned_cols=157 Identities=31% Similarity=0.500 Sum_probs=100.8
Q ss_pred cCCCccEEEcCCCccCcCCcc-ccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEE
Q 010567 302 EAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 380 (507)
Q Consensus 302 ~~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 380 (507)
.+++|++|++++|.+..++.. +..+++|++|++++|.+..++...+..+++|++|++++|.++.++...+..+++|+.|
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 345566666666655555443 3556666666666666666665555666666666666666666666656666667777
Q ss_pred EccCcccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCccccccc-cccCCCCCCeEeCCCCCCC
Q 010567 381 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNIS 458 (507)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~ 458 (507)
++++|.+....+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.++.+|. .+..+++|++|++++|.+.
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 7766666665555566667777777777766665543 5566777777777777766654 3566777777777777654
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=7e-21 Score=174.13 Aligned_cols=201 Identities=24% Similarity=0.253 Sum_probs=151.6
Q ss_pred cCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCCC-CccccCCCCccEEEccCCccccccccccCCCCHHHHHH
Q 010567 174 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 252 (507)
Q Consensus 174 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (507)
+.+++++++++++++++.++.... ..++.|++++|.++++ +..+..+++|+.|++++|.++.++.
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV------------- 72 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------------
T ss_pred cccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-------------
Confidence 334445555555555554443321 2355556666665553 3457778888888888887643221
Q ss_pred HHhcCCCCCccccccchhhhhhhhhccccccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEE
Q 010567 253 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL 332 (507)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L 332 (507)
. ..+++|+.|++++|.+..+|..+..+++|++|
T Consensus 73 ----------------------------------------------~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 73 ----------------------------------------------D-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105 (290)
T ss_dssp ----------------------------------------------C-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred ----------------------------------------------C-CCCCcCCEEECCCCcCCcCchhhccCCCCCEE
Confidence 0 23567888888888888888878888888999
Q ss_pred ecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCc
Q 010567 333 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 412 (507)
Q Consensus 333 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 412 (507)
++++|.++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|.+....+..+..+++|+.|++++|+++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 99998888888777888889999999999888888887888899999999998888777777788899999999999999
Q ss_pred ccccchhccCCCcEEEcCCCccc
Q 010567 413 EAPTDILRLQQLRILDLSQNSLQ 435 (507)
Q Consensus 413 ~l~~~~~~~~~L~~L~l~~~~l~ 435 (507)
.+|..+...++|+.+++++|.+.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccChhhcccccCCeEEeCCCCcc
Confidence 98888888889999999988765
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.3e-20 Score=168.94 Aligned_cols=178 Identities=31% Similarity=0.425 Sum_probs=113.0
Q ss_pred CccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccC
Q 010567 305 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 384 (507)
Q Consensus 305 ~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 384 (507)
+.++++++++.+..+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.++++++..+..+++|+.|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34455555555555554433 4566666666666666555566666666666666666666665566666666666666
Q ss_pred cccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCccccccc-cccCCCCCCeEeCCCCCCCCCCC
Q 010567 385 NIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPP 462 (507)
Q Consensus 385 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~ 462 (507)
|.+....+..+..+++|++|++++|+++.++.. +..+++|++|++++|.++.+|. .+.++++|++|++++|+++.+++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 666666555666666777777777766666554 4556677777777777766654 46667777777777777766665
Q ss_pred cccCCCccCceEeccCCCCCCc
Q 010567 463 ELGLLEPSLQALRLDGNPLRSI 484 (507)
Q Consensus 463 ~~~~~~~~L~~L~l~~n~~~~~ 484 (507)
.....+++|+.|++++|++..-
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 4433336777777777776543
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.4e-21 Score=171.60 Aligned_cols=194 Identities=20% Similarity=0.271 Sum_probs=146.0
Q ss_pred cccceEEecCCCCCCCCh-hhhcCCCccEEEcCCCc-cCcCCc-cccCCCcCcEEeccc-CcccCCchHHhhcCCCCCEE
Q 010567 281 VTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNS-IQELPP-ELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCL 356 (507)
Q Consensus 281 ~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~i~~-~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L 356 (507)
.+++.++++++.+..++. .+..+++|+.|++++|. +..++. .+..+++|++|++++ |.++.++...|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 367788888888776665 45567888888888886 777665 477788888888887 77777776667778888888
Q ss_pred EccCCCCCCCCccccCCCCCce---EEEccCc-ccCCCCCCCCCCCCcCc-EEEcccccCcccccchhccCCCcEEEcCC
Q 010567 357 KLDNNPLRQVPSDGFKDIPMLQ---ILDLSYN-IASLPENPPFSSLPHLQ-ELYLRRMQLREAPTDILRLQQLRILDLSQ 431 (507)
Q Consensus 357 ~l~~~~i~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~i~~l~~~~~~~~~L~~L~l~~ 431 (507)
++++|.+++++. +..+++|+ .|++++| .+....+..+..+++|+ .|++++|+++.+|......++|+.|++++
T Consensus 111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 888888877665 66777776 8888887 77776666777788888 88888888887776655557788888888
Q ss_pred Cc-ccccc-ccccCC-CCCCeEeCCCCCCCCCCCcccCCCccCceEeccCC
Q 010567 432 NS-LQSIP-EGFKNL-TSLTELDLSDNNISALPPELGLLEPSLQALRLDGN 479 (507)
Q Consensus 432 ~~-l~~l~-~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 479 (507)
|+ ++.+| ..+.++ ++|++|++++|+++.+|+. .+ ++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~-~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GL-EHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TC-TTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh--Hh-ccCceeeccCc
Confidence 84 77774 456777 8888888888888877765 23 77888888776
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=4.8e-22 Score=190.56 Aligned_cols=231 Identities=25% Similarity=0.278 Sum_probs=189.1
Q ss_pred ecHHhhcccCCCCEEEcCCCcccc-----cCccccCCCcccEEeCCCCCCC----CCchhh-------hcccCCCeEEcC
Q 010567 6 FLLYVFDRLHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQLK----ELPSSL-------GRCLNLSDFKAS 69 (507)
Q Consensus 6 ~~~~~~~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~L~~L~l~~~~l~----~~~~~~-------~~~~~L~~L~l~ 69 (507)
.++.++..+++|+.|++++|.+.. ++..+..+++|++|++++|.+. .+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456788899999999999998873 4455778999999999998665 345444 688999999999
Q ss_pred CCcCcc-----CCccccCCCCCcEEEcCCCcccccchhhhc----Cc---------cccceeecCCcccc--ccc---cc
Q 010567 70 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA----SW---------TMLTELIASKNLLN--GMP---ET 126 (507)
Q Consensus 70 ~~~~~~-----l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~----~~---------~~L~~L~l~~~~~~--~~~---~~ 126 (507)
+|.++. ++..+..+++|++|++++|.++......+. .+ ++|++|++++|.+. .++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999985 667889999999999999999754433333 33 89999999999985 344 46
Q ss_pred ccCCCcccEEeccCCccc------cCCCCCcCCCCCcEEEcCCCCC-----ccCCccccCCCCCCEEEcCCCccccc---
Q 010567 127 IGSLSRLIRLDLHQNRIL------SIPSSISGCCSLAEFYMGNNAL-----SALPAELGKLSKLGTLDLHSNQLKEY--- 192 (507)
Q Consensus 127 ~~~~~~L~~L~l~~~~i~------~l~~~~~~~~~L~~L~l~~~~~-----~~l~~~l~~~~~L~~L~l~~~~~~~~--- 192 (507)
+..+++|++|++++|.+. ..+..+..+++|++|++++|.+ ..+|..+..+++|++|++++|++.+.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 778899999999999987 2344788999999999999998 45777889999999999999998854
Q ss_pred --chhhh---ccccCeEECCCCCCCC-----CCccc-cCCCCccEEEccCCcccc
Q 010567 193 --CVEAC---QLRLSVLDLSNNSLSG-----LPPEI-GKMTTLRKLLLTGNPLRT 236 (507)
Q Consensus 193 --~~~~~---~~~L~~l~l~~~~~~~-----~~~~l-~~l~~L~~L~l~~~~~~~ 236 (507)
+.... ..+|+.|++++|.+++ ++..+ .++++|+.|++++|.++.
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 33321 3449999999999998 77776 668999999999998863
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=3.8e-20 Score=168.03 Aligned_cols=181 Identities=30% Similarity=0.386 Sum_probs=137.8
Q ss_pred hhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceE
Q 010567 300 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 379 (507)
Q Consensus 300 ~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 379 (507)
...+++|+.|++.++.+..++ .+..+++|++|++++|.+.+.. .+..+++|++|++++|.+++++...+..+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 345677888888888777765 3677788888888888877753 4577888888888888888877777778888888
Q ss_pred EEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCccccccc-cccCCCCCCeEeCCCCCC
Q 010567 380 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNI 457 (507)
Q Consensus 380 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l 457 (507)
|++++|.+.+..+..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.++.++. .+.++++|++|++++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 88888888777777777888888888888888866654 4677888888888888887754 357788888888888888
Q ss_pred CCCCCcccCCCccCceEeccCCCCCC
Q 010567 458 SALPPELGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 458 ~~~~~~~~~~~~~L~~L~l~~n~~~~ 483 (507)
+.+++.....+++|+.|++++|++..
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccCHHHHhCCcCCCEEEccCCCccc
Confidence 87776654444888888888887754
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.5e-21 Score=171.54 Aligned_cols=194 Identities=16% Similarity=0.245 Sum_probs=169.7
Q ss_pred CCCCChhhhcCCCccEEEcCCCccCcCCc-cccCCCcCcEEecccCc-ccCCchHHhhcCCCCCEEEccC-CCCCCCCcc
Q 010567 293 LSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNK-IKDWPDAILTSLSSLSCLKLDN-NPLRQVPSD 369 (507)
Q Consensus 293 ~~~~~~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~ 369 (507)
++.+|. + .++++.|+++++.+..++. .+..+++|++|++++|. ++.++...|..+++|++|++++ |.++.++..
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 667776 2 3489999999999999877 58899999999999997 8888888889999999999998 999999988
Q ss_pred ccCCCCCceEEEccCcccCCCCCCCCCCCCcCc---EEEcccc-cCcccccc-hhccCCCc-EEEcCCCccccccccccC
Q 010567 370 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ---ELYLRRM-QLREAPTD-ILRLQQLR-ILDLSQNSLQSIPEGFKN 443 (507)
Q Consensus 370 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~i~~l~~~-~~~~~~L~-~L~l~~~~l~~l~~~~~~ 443 (507)
.|..+++|+.|++++|.+.+... +..+++|+ .|++++| .++.++.. +..+++|+ .|++++|+++.+|.....
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 89999999999999999887433 88888888 9999999 99988765 78899999 999999999999866444
Q ss_pred CCCCCeEeCCCCC-CCCCCCcccCCC-ccCceEeccCCCCCCccHHHHhh
Q 010567 444 LTSLTELDLSDNN-ISALPPELGLLE-PSLQALRLDGNPLRSIRRTILDR 491 (507)
Q Consensus 444 l~~L~~L~l~~~~-l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~ 491 (507)
.++|++|++++|+ ++.+++..+..+ ++|+.|++++|+++.++...|..
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~ 227 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTT
T ss_pred CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhcc
Confidence 4999999999995 998888777766 89999999999999998775543
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.9e-20 Score=169.97 Aligned_cols=193 Identities=27% Similarity=0.368 Sum_probs=170.2
Q ss_pred cccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccC
Q 010567 281 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 360 (507)
Q Consensus 281 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 360 (507)
.+++.+.+.++.+..++ .+..+++|+.|++++|.+.+++ .+..+++|++|++++|.+++.+...+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 57899999999888765 4778999999999999999875 688999999999999999999888889999999999999
Q ss_pred CCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCccccccc
Q 010567 361 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 439 (507)
Q Consensus 361 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~l~~ 439 (507)
|.+++++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.++.. +..+++|++|++++|.++.++.
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 999999988899999999999999999988888889999999999999999977765 5789999999999999998864
Q ss_pred -cccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCC
Q 010567 440 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 482 (507)
Q Consensus 440 -~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 482 (507)
.+.++++|++|++++|.+... +++|+.+++++|.++
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHS 235 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTG
T ss_pred HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCC
Confidence 578999999999999986521 366777777776654
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=8.9e-20 Score=163.57 Aligned_cols=178 Identities=30% Similarity=0.418 Sum_probs=161.9
Q ss_pred cccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCc-cccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEcc
Q 010567 281 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 359 (507)
Q Consensus 281 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 359 (507)
.+.+.++++++.+..+|..+. +.++.|+++++.+..++. .+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 456789999999999987664 689999999999998765 58899999999999999999988888999999999999
Q ss_pred CCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCccccc-chhccCCCcEEEcCCCcccccc
Q 010567 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP 438 (507)
Q Consensus 360 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~l~ 438 (507)
+|.++.++...+..+++|+.|++++|.+....+..+..+++|+.|++++|+++.++. .+..+++|++|++++|.++.+|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 999999998889999999999999999998888888999999999999999998877 5788999999999999999886
Q ss_pred c-cccCCCCCCeEeCCCCCCCCC
Q 010567 439 E-GFKNLTSLTELDLSDNNISAL 460 (507)
Q Consensus 439 ~-~~~~l~~L~~L~l~~~~l~~~ 460 (507)
. .+.++++|++|++++|++...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 4 689999999999999998743
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=5.7e-22 Score=190.05 Aligned_cols=164 Identities=21% Similarity=0.267 Sum_probs=84.6
Q ss_pred CChhhhcCCCccEEEcCCCccCc-----CCccccCC---------CcCcEEecccCcccCCch----HHhhcCCCCCEEE
Q 010567 296 IPSEIWEAGEITKLDLSRNSIQE-----LPPELSSC---------ASLQTLILSRNKIKDWPD----AILTSLSSLSCLK 357 (507)
Q Consensus 296 ~~~~~~~~~~L~~L~l~~~~~~~-----i~~~~~~~---------~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~ 357 (507)
++..+..+++|+.|++++|.+.. ++..+..+ ++|++|++++|.+++... ..+..+++|++|+
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 193 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 193 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEE
Confidence 34455566677777777776653 22223333 566666666666653211 2344566666666
Q ss_pred ccCCCCCC-----CCccccCCCCCceEEEccCcccC----CCCCCCCCCCCcCcEEEcccccCcc-----cccchh--cc
Q 010567 358 LDNNPLRQ-----VPSDGFKDIPMLQILDLSYNIAS----LPENPPFSSLPHLQELYLRRMQLRE-----APTDIL--RL 421 (507)
Q Consensus 358 l~~~~i~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~i~~-----l~~~~~--~~ 421 (507)
+++|.++. +....+..+++|+.|++++|.++ ...+..+..+++|+.|++++|.++. ++..+. .+
T Consensus 194 L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 273 (386)
T 2ca6_A 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273 (386)
T ss_dssp CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSS
T ss_pred CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccC
Confidence 66666552 11113455556666666655543 1122234445555555555555542 233332 25
Q ss_pred CCCcEEEcCCCcccc-----ccccc-cCCCCCCeEeCCCCCCCC
Q 010567 422 QQLRILDLSQNSLQS-----IPEGF-KNLTSLTELDLSDNNISA 459 (507)
Q Consensus 422 ~~L~~L~l~~~~l~~-----l~~~~-~~l~~L~~L~l~~~~l~~ 459 (507)
++|++|++++|.++. +|..+ .++++|++|++++|.++.
T Consensus 274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 555555555555554 44444 345555555555555553
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=175.45 Aligned_cols=219 Identities=18% Similarity=0.188 Sum_probs=173.5
Q ss_pred CCCCEEEcCCCccc--ccCcc--ccCCCcccEEeCCCCCCC-CCchhh--hcccCCCeEEcCCCcCccC-C----ccccC
Q 010567 15 HMLKSLDVSFNSIM--KIPDE--IGSATALVKFDCSSNQLK-ELPSSL--GRCLNLSDFKASNNCITSL-P----EDLAD 82 (507)
Q Consensus 15 ~~L~~L~l~~~~i~--~~~~~--~~~~~~L~~L~l~~~~l~-~~~~~~--~~~~~L~~L~l~~~~~~~l-~----~~~~~ 82 (507)
..++.+.+.+..+. .+... +..+++|++|++++|.+. ..|..+ ..+++|++|++++|.++.. + ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34678888887765 22221 223567999999999987 456666 7889999999999988842 2 23457
Q ss_pred CCCCcEEEcCCCcccccchhhhcCccccceeecCCccccc---cc--ccccCCCcccEEeccCCccccCCCC----CcCC
Q 010567 83 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG---MP--ETIGSLSRLIRLDLHQNRILSIPSS----ISGC 153 (507)
Q Consensus 83 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~---~~--~~~~~~~~L~~L~l~~~~i~~l~~~----~~~~ 153 (507)
+++|++|++++|++..++...+.++++|++|++++|.+.. ++ ..+..+++|++|++++|.++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 8999999999999998888889999999999999998643 32 2346788999999999998765442 4678
Q ss_pred CCCcEEEcCCCCCccC-CccccCC---CCCCEEEcCCCcccccchhhhccccCeEECCCCCCCCCCccccCCCCccEEEc
Q 010567 154 CSLAEFYMGNNALSAL-PAELGKL---SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 229 (507)
Q Consensus 154 ~~L~~L~l~~~~~~~l-~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~l~~l~~L~~L~l 229 (507)
++|++|++++|.++.. |..+..+ ++|++|++++|+++.++.... .+|++|++++|.++++|. +..+++|+.|++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L 301 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTL 301 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCC-TTSCCCCSCEEC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCch-hhhCCCccEEEC
Confidence 9999999999999866 7666666 699999999999998877654 569999999999998865 788899999999
Q ss_pred cCCccc
Q 010567 230 TGNPLR 235 (507)
Q Consensus 230 ~~~~~~ 235 (507)
++|+++
T Consensus 302 ~~N~l~ 307 (310)
T 4glp_A 302 DGNPFL 307 (310)
T ss_dssp SSTTTS
T ss_pred cCCCCC
Confidence 999875
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.2e-19 Score=166.07 Aligned_cols=172 Identities=23% Similarity=0.361 Sum_probs=96.6
Q ss_pred cccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEc
Q 010567 12 DRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV 91 (507)
Q Consensus 12 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l 91 (507)
+++++|+.|+++++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEEC
Confidence 345556666666665555532 5555666666666666655554 555566666666666655553 3555666666666
Q ss_pred CCCcccccchhhhcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCc
Q 010567 92 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 171 (507)
Q Consensus 92 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~ 171 (507)
++|++++++. +..+++|++|++++|.+..+ ..+..+++|+.|++++|.+..++. +..+++|++|++++|.++.++.
T Consensus 120 ~~n~i~~~~~--l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 120 EHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp TTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCcCCCChh--hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 6666555432 55556666666666655554 345555556666666555555443 5555555555555555555532
Q ss_pred cccCCCCCCEEEcCCCcccc
Q 010567 172 ELGKLSKLGTLDLHSNQLKE 191 (507)
Q Consensus 172 ~l~~~~~L~~L~l~~~~~~~ 191 (507)
+..+++|+.|++++|++..
T Consensus 196 -l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GTTCTTCSEEEEEEEEEEC
T ss_pred -hccCCCCCEEECcCCcccC
Confidence 5555555555555555443
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=4.5e-19 Score=175.62 Aligned_cols=189 Identities=30% Similarity=0.402 Sum_probs=164.7
Q ss_pred cccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccC
Q 010567 281 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 360 (507)
Q Consensus 281 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 360 (507)
.+++.|+++++.+..+|..+. ++|+.|++++|.+..+| ..+++|++|++++|.+++++. +.. +|+.|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 478999999999999888663 78999999999999998 557899999999999999766 443 999999999
Q ss_pred CCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCcccccccc
Q 010567 361 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 440 (507)
Q Consensus 361 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~~~ 440 (507)
|.+++++. .+++|+.|++++|.+++... .+++|+.|++++|.++.+|. +. ++|+.|++++|.++.+|.
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 99999876 68999999999999887443 57899999999999999988 54 899999999999999988
Q ss_pred ccCCCCC-------CeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCccHHHHhhhH
Q 010567 441 FKNLTSL-------TELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGT 493 (507)
Q Consensus 441 ~~~l~~L-------~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 493 (507)
+.. +| ++|++++|.++.+|..+..+ ++|+.|++++|+++...+..+....
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGS-CTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcC-CCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 654 77 99999999999999998885 9999999999999987777776643
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=8.1e-20 Score=169.35 Aligned_cols=199 Identities=18% Similarity=0.144 Sum_probs=166.0
Q ss_pred ccCCCCEEEcCCCccc-ccCccc--cCCCcccEEeCCCCCCCCC-c----hhhhcccCCCeEEcCCCcCccCC-ccccCC
Q 010567 13 RLHMLKSLDVSFNSIM-KIPDEI--GSATALVKFDCSSNQLKEL-P----SSLGRCLNLSDFKASNNCITSLP-EDLADC 83 (507)
Q Consensus 13 ~~~~L~~L~l~~~~i~-~~~~~~--~~~~~L~~L~l~~~~l~~~-~----~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~ 83 (507)
.+++|++|++++|.+. ..|..+ ..+++|++|++++|.++.. + ..+..+++|++|++++|.+..++ ..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 4577999999999998 456666 8899999999999998842 2 24457899999999999998765 678899
Q ss_pred CCCcEEEcCCCcccc---cc-hhhhcCccccceeecCCcccccccc----cccCCCcccEEeccCCccccC-CCCCcCC-
Q 010567 84 SKMSKLDVEGNKLTV---LS-NNLIASWTMLTELIASKNLLNGMPE----TIGSLSRLIRLDLHQNRILSI-PSSISGC- 153 (507)
Q Consensus 84 ~~L~~L~l~~~~l~~---~~-~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~i~~l-~~~~~~~- 153 (507)
++|++|++++|++.. ++ ...+..+++|++|++++|.++.++. .+..+++|++|++++|.+... |..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999998764 22 2224789999999999999987654 256789999999999999976 7777666
Q ss_pred --CCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCCCC
Q 010567 154 --CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 213 (507)
Q Consensus 154 --~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 213 (507)
++|++|++++|.++.+|..+. ++|++|++++|++..++.......|+.+++++|.+++
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 699999999999999988775 7999999999999987664444559999999998875
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=1.7e-20 Score=177.87 Aligned_cols=155 Identities=25% Similarity=0.267 Sum_probs=80.6
Q ss_pred CCccEEEcCCCccCcCCcc-----ccC-CCcCcEEecccCcccCCchHH----hhcCC-CCCEEEccCCCCCCCCccc--
Q 010567 304 GEITKLDLSRNSIQELPPE-----LSS-CASLQTLILSRNKIKDWPDAI----LTSLS-SLSCLKLDNNPLRQVPSDG-- 370 (507)
Q Consensus 304 ~~L~~L~l~~~~~~~i~~~-----~~~-~~~L~~L~l~~~~l~~~~~~~----~~~~~-~L~~L~l~~~~i~~~~~~~-- 370 (507)
++|++|++++|.+.+.+.. +.. +.+|++|++++|.+++..... +..++ +|++|++++|.++......
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 5677777777766654321 222 246667777766666533322 23333 6666666666666555432
Q ss_pred --cCCC-CCceEEEccCcccCCCCCC----CCCC-CCcCcEEEcccccCcccc-----cchhccCCCcEEEcCCCccc--
Q 010567 371 --FKDI-PMLQILDLSYNIASLPENP----PFSS-LPHLQELYLRRMQLREAP-----TDILRLQQLRILDLSQNSLQ-- 435 (507)
Q Consensus 371 --~~~~-~~L~~L~l~~~~~~~~~~~----~~~~-~~~L~~L~l~~~~i~~l~-----~~~~~~~~L~~L~l~~~~l~-- 435 (507)
+..+ ++|+.|++++|.+++.... .+.. .++|+.|++++|.++..+ ..+..+++|++|++++|.+.
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 2333 3666666666655543221 1111 245666666666555322 22344555666666666522
Q ss_pred ------cccccccCCCCCCeEeCCCCCCC
Q 010567 436 ------SIPEGFKNLTSLTELDLSDNNIS 458 (507)
Q Consensus 436 ------~l~~~~~~l~~L~~L~l~~~~l~ 458 (507)
.++..+.++++|++|++++|.+.
T Consensus 269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 269 SKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred CHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 22334555556666666666554
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3e-19 Score=163.50 Aligned_cols=170 Identities=30% Similarity=0.396 Sum_probs=88.6
Q ss_pred CCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEc
Q 010567 303 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 382 (507)
Q Consensus 303 ~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 382 (507)
+++|+.|++++|.+.+++. +..+++|++|++++|.+++..+ +..+++|+.|++++|.++.++. +..+++|+.|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCEEEC
Confidence 3455555555555555432 4455555555555555555443 4455555555555555554432 455555555555
Q ss_pred cCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCccccccccccCCCCCCeEeCCCCCCCCCCC
Q 010567 383 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 462 (507)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~ 462 (507)
++|.+.+. ..+..+++|+.|++++|+++.+ ..+..+++|+.|++++|.++.++. +..+++|++|++++|.++.+++
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 55554443 2344555555555555555554 344555555555555555555543 5555555555555555555433
Q ss_pred cccCCCccCceEeccCCCCCC
Q 010567 463 ELGLLEPSLQALRLDGNPLRS 483 (507)
Q Consensus 463 ~~~~~~~~L~~L~l~~n~~~~ 483 (507)
+..+ ++|+.|++++|++..
T Consensus 196 -l~~l-~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 196 -LAGL-KNLDVLELFSQECLN 214 (291)
T ss_dssp -GTTC-TTCSEEEEEEEEEEC
T ss_pred -hccC-CCCCEEECcCCcccC
Confidence 3333 555555555555443
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.6e-18 Score=171.57 Aligned_cols=178 Identities=24% Similarity=0.351 Sum_probs=124.7
Q ss_pred cccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCc
Q 010567 39 ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 118 (507)
Q Consensus 39 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 118 (507)
+++.|++++|.++.+|..+. ++|++|++++|.++.+| ..+++|+.|++++|+++.++. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC
Confidence 66777777777666665442 56777777777777666 346677777777777766555 333 6777777777
Q ss_pred ccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCcccccchhhhc
Q 010567 119 LLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ 198 (507)
Q Consensus 119 ~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 198 (507)
.++.+|. .+++|+.|++++|.++.+|. .+++|++|++++|.++.+|. +. ++|+.|++++|+++.++. ...
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH
Confidence 7766665 46677777777777776665 45677777777777777766 54 677777777777776666 222
Q ss_pred ccc-------CeEECCCCCCCCCCccccCCCCccEEEccCCcccc
Q 010567 199 LRL-------SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 236 (507)
Q Consensus 199 ~~L-------~~l~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 236 (507)
.| +.|++++|.++.+|..+..+++|+.|++++|+++.
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp --------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred -hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 56 88888888888888888888889999998888753
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=3.5e-20 Score=175.75 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=34.9
Q ss_pred EEcCCCccccc-CccccCCCcccEEeCCCCCCCCCc-----hhhhccc-CCCeEEcCCCcCccC-CccccCC-----CCC
Q 010567 20 LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-----SSLGRCL-NLSDFKASNNCITSL-PEDLADC-----SKM 86 (507)
Q Consensus 20 L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~~-----~~L 86 (507)
++++.+.+... |..+...++|++|++++|.++..+ ..+..++ +|++|++++|.++.. +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 34444544422 222333333555555555554333 3344444 455555555554432 1222221 455
Q ss_pred cEEEcCCCccccc
Q 010567 87 SKLDVEGNKLTVL 99 (507)
Q Consensus 87 ~~L~l~~~~l~~~ 99 (507)
++|++++|++++.
T Consensus 83 ~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 83 TSLNLSGNFLSYK 95 (362)
T ss_dssp CEEECCSSCGGGS
T ss_pred cEEECcCCcCChH
Confidence 5555555554433
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.5e-18 Score=172.34 Aligned_cols=175 Identities=23% Similarity=0.332 Sum_probs=153.1
Q ss_pred hcccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEE
Q 010567 11 FDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 90 (507)
Q Consensus 11 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 90 (507)
+..+++|+.|+++++.+..++ .+..+++|+.|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|+.|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 457889999999999998876 58889999999999999998876 888999999999999999886 788899999999
Q ss_pred cCCCcccccchhhhcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCC
Q 010567 91 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 170 (507)
Q Consensus 91 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~ 170 (507)
+++|++..++. +..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++
T Consensus 116 Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 116 LEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp CTTSCCCCCGG--GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred ecCCCCCCCcc--ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh
Confidence 99999998754 88999999999999999887 578889999999999999987765 888999999999999998875
Q ss_pred ccccCCCCCCEEEcCCCcccccc
Q 010567 171 AELGKLSKLGTLDLHSNQLKEYC 193 (507)
Q Consensus 171 ~~l~~~~~L~~L~l~~~~~~~~~ 193 (507)
.+..+++|+.|++++|++...+
T Consensus 192 -~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GGTTCTTCSEEECCSEEEECCC
T ss_pred -HHccCCCCCEEEccCCcCcCCc
Confidence 5888999999999999877543
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=2.1e-19 Score=168.96 Aligned_cols=144 Identities=21% Similarity=0.269 Sum_probs=74.8
Q ss_pred CcEEEcCCCcccccchhhhcCc--cccceeecCCcccccccccccCCCcccEEeccCCcccc--CCCCCcCCCCCcEEEc
Q 010567 86 MSKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAEFYM 161 (507)
Q Consensus 86 L~~L~l~~~~l~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~l 161 (507)
++.++++++.+. ...+..+ ++++.+++.++.+...+..+..+++|++|++++|.+.. ++..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 555666655444 2234444 56666666666655544445556666666666666542 4445556666666666
Q ss_pred CCCCCc-cCCccccCCCCCCEEEcCCC-cccc--cchhhhc-cccCeEECCCC-CCCC--CCccccCCC-CccEEEccCC
Q 010567 162 GNNALS-ALPAELGKLSKLGTLDLHSN-QLKE--YCVEACQ-LRLSVLDLSNN-SLSG--LPPEIGKMT-TLRKLLLTGN 232 (507)
Q Consensus 162 ~~~~~~-~l~~~l~~~~~L~~L~l~~~-~~~~--~~~~~~~-~~L~~l~l~~~-~~~~--~~~~l~~l~-~L~~L~l~~~ 232 (507)
++|.++ ..+..+..+++|++|++++| .+++ ++..... .+|++|++++| .+++ ++..+..++ +|+.|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 666655 33445556666666666666 3442 2221111 12444444444 3332 233344444 5555555544
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=2e-19 Score=169.18 Aligned_cols=170 Identities=21% Similarity=0.301 Sum_probs=82.2
Q ss_pred CCEEEcCCCcccccCccccCC--CcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCcc--CCccccCCCCCcEEEcC
Q 010567 17 LKSLDVSFNSIMKIPDEIGSA--TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVE 92 (507)
Q Consensus 17 L~~L~l~~~~i~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~ 92 (507)
++.++++++.+. +..+..+ ++++.++++++.+...+..+..+++|++|++++|.++. ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 555555555443 2223333 45555555555555443334445555555555555442 44445555555555555
Q ss_pred CCcccccchhhhcCccccceeecCCc-cccc--ccccccCCCcccEEeccCC-cccc--CCCCCcCCC-CCcEEEcCCCC
Q 010567 93 GNKLTVLSNNLIASWTMLTELIASKN-LLNG--MPETIGSLSRLIRLDLHQN-RILS--IPSSISGCC-SLAEFYMGNNA 165 (507)
Q Consensus 93 ~~~l~~~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~-~i~~--l~~~~~~~~-~L~~L~l~~~~ 165 (507)
+|.+++.....+..+++|++|++++| .++. ++..+..+++|++|++++| .++. ++..+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 55555433334555555555555555 3332 3334444555555555555 4442 333344445 55555555552
Q ss_pred --Cc--cCCccccCCCCCCEEEcCCCc
Q 010567 166 --LS--ALPAELGKLSKLGTLDLHSNQ 188 (507)
Q Consensus 166 --~~--~l~~~l~~~~~L~~L~l~~~~ 188 (507)
++ .++..+..+++|++|++++|.
T Consensus 207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 207 KNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred ccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 22 233334444555555555554
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=3.2e-18 Score=148.77 Aligned_cols=177 Identities=27% Similarity=0.387 Sum_probs=130.7
Q ss_pred cceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCcc-ccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCC
Q 010567 283 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 361 (507)
Q Consensus 283 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 361 (507)
.+.++.+++.+..+|..+ .+++++|+++++.+..++.. +..+++|++|++++|.+..++...|..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 356667777777776544 35788888888888776654 567788888888888888777766777888888888888
Q ss_pred CCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCcccccccc
Q 010567 362 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG 440 (507)
Q Consensus 362 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~l~~~ 440 (507)
.++.++...+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 88877777677788888888888877776666677778888888888888766654 566778888888887544
Q ss_pred ccCCCCCCeEeCCCCCCC-CCCCcccCC
Q 010567 441 FKNLTSLTELDLSDNNIS-ALPPELGLL 467 (507)
Q Consensus 441 ~~~l~~L~~L~l~~~~l~-~~~~~~~~~ 467 (507)
..+++|++|+++.|+++ .+|+.+...
T Consensus 162 -~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 -CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 34567777887777766 566655544
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=2.7e-18 Score=161.90 Aligned_cols=204 Identities=20% Similarity=0.245 Sum_probs=105.9
Q ss_pred ceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCc-cccCCCcCcEEecccCcccC-CchHHhhcCCCCCE-EEccC
Q 010567 284 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSC-LKLDN 360 (507)
Q Consensus 284 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~-L~l~~ 360 (507)
+.++.++++++.+|..+ .+++++|++++|.++.+|. .|.++++|++|++++|.+.+ ++...|..++++.+ +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 34455555556665544 2456666666666666654 35666666666666665533 34444555555544 33344
Q ss_pred CCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEccc-ccCcccccc-hhcc-CCCcEEEcCCCccccc
Q 010567 361 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR-MQLREAPTD-ILRL-QQLRILDLSQNSLQSI 437 (507)
Q Consensus 361 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~l~~~-~~~~-~~L~~L~l~~~~l~~l 437 (507)
|+++.+++..|..+++|+.|++++|.+.......+....++..+++.+ +.+..++.. +..+ ..++.|++++|+++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 556666555566666666666666655554444444444455555533 244444332 2222 2455555555555555
Q ss_pred cccccCCCCCCeEeCCC-CCCCCCCCcccCCCccCceEeccCCCCCCccHHHH
Q 010567 438 PEGFKNLTSLTELDLSD-NNISALPPELGLLEPSLQALRLDGNPLRSIRRTIL 489 (507)
Q Consensus 438 ~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 489 (507)
|......++|+++++.+ |.++.+|+..+..+++|+.|++++|+++.++...|
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 44444444555555543 34555555443333555555555555555554443
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.5e-18 Score=162.72 Aligned_cols=175 Identities=30% Similarity=0.367 Sum_probs=133.0
Q ss_pred cEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhh-cCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCc
Q 010567 307 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 385 (507)
Q Consensus 307 ~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 385 (507)
+.++++++.+..+|..+. +.+++|++++|.++.+....+. .+++|+.|++++|.++.++...|..+++|+.|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456777777777776443 4577788888887777766666 7788888888888888887777888888888888888
Q ss_pred ccCCCCCCCCCCCCcCcEEEcccccCccc-ccchhccCCCcEEEcCCCccccccccc----cCCCCCCeEeCCCCCCCCC
Q 010567 386 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGF----KNLTSLTELDLSDNNISAL 460 (507)
Q Consensus 386 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~l~~~~----~~l~~L~~L~l~~~~l~~~ 460 (507)
.+....+..|..+++|+.|++++|+|..+ +..+..+++|+.|++++|.++.+|..+ .++++|++|++++|+++.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 87777777788888888888888888866 456778888889999888888887653 5688999999999998888
Q ss_pred CCcccCCCcc--CceEeccCCCCCC
Q 010567 461 PPELGLLEPS--LQALRLDGNPLRS 483 (507)
Q Consensus 461 ~~~~~~~~~~--L~~L~l~~n~~~~ 483 (507)
+......++. ++.|++.+|++.-
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhhhccHhhcceEEecCCCccC
Confidence 7643333354 4789999998863
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.7e-17 Score=146.18 Aligned_cols=151 Identities=33% Similarity=0.448 Sum_probs=114.7
Q ss_pred ccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCc
Q 010567 306 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 385 (507)
Q Consensus 306 L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 385 (507)
.+.++.+++.+..+|..+. ++|++|++++|.+..+.+..|..+++|++|++++|.++.++...|..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567777777777776443 77888888888888777777777888888888888887777776777888888888887
Q ss_pred ccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCcccccc-ccccCCCCCCeEeCCCCCCC
Q 010567 386 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNIS 458 (507)
Q Consensus 386 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~l~ 458 (507)
.+....+..+..+++|+.|++++|+++.+|..+..+++|++|++++|.++.+| ..+..+++|++|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 77776666677777888888888877777777777778888888888777775 34677777888888777765
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=4.2e-18 Score=146.46 Aligned_cols=151 Identities=18% Similarity=0.225 Sum_probs=81.1
Q ss_pred CCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcCCCcccccchhhhcCccccceeec
Q 010567 36 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 115 (507)
Q Consensus 36 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 115 (507)
.+++|++|+++++.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|+++......+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3445555555555555554 3555555555555555444442 4455555555555555555433333555555555555
Q ss_pred CCccccc-ccccccCCCcccEEeccCCc-cccCCCCCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCccc
Q 010567 116 SKNLLNG-MPETIGSLSRLIRLDLHQNR-ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 190 (507)
Q Consensus 116 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~-i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 190 (507)
++|.+.. .+..+..+++|++|++++|. +..++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 5555543 33445555556666666554 44443 4555666666666666666554 4566666666666666654
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=5.5e-18 Score=145.72 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=115.4
Q ss_pred cCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcE
Q 010567 324 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 403 (507)
Q Consensus 324 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 403 (507)
..+++|++|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44566777777777666555 2566777777777777665543 3677788888888888777666667788888999
Q ss_pred EEcccccCcc-cccchhccCCCcEEEcCCCc-cccccccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCC
Q 010567 404 LYLRRMQLRE-APTDILRLQQLRILDLSQNS-LQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 481 (507)
Q Consensus 404 L~l~~~~i~~-l~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 481 (507)
|++++|+++. .+..+..+++|++|++++|. ++.+| .+.++++|++|++++|.++.++ .+..+ ++|+.|++++|+|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l-~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDF-PKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGC-SSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccC-CCCCEEEeeCccc
Confidence 9999988884 66678888999999999997 88886 6888999999999999988876 45555 8999999999987
Q ss_pred CC
Q 010567 482 RS 483 (507)
Q Consensus 482 ~~ 483 (507)
..
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 64
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=2.9e-18 Score=154.34 Aligned_cols=169 Identities=22% Similarity=0.294 Sum_probs=127.5
Q ss_pred cceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCC
Q 010567 283 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 362 (507)
Q Consensus 283 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 362 (507)
+..+.++++.+..++ .+..+++|+.|++++|.+.+++ .+..+++|++|++++|.+.++++ +..+++|+.|++++|.
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 445556666666655 4566788888888888888877 57778888888888888887766 6778888888888888
Q ss_pred CCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCcccccccccc
Q 010567 363 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFK 442 (507)
Q Consensus 363 i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~ 442 (507)
+++++.. .. ++|+.|++++|.+.+.. .+..+++|+.|++++|+++.++ .+..+++|+.|++++|.++.+ ..+.
T Consensus 97 l~~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~ 169 (263)
T 1xeu_A 97 LKNLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLT 169 (263)
T ss_dssp CSCCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTST
T ss_pred cCCcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhc
Confidence 8777653 33 78888888888776642 4677788888888888888775 567778888888888888777 5677
Q ss_pred CCCCCCeEeCCCCCCCCCCC
Q 010567 443 NLTSLTELDLSDNNISALPP 462 (507)
Q Consensus 443 ~l~~L~~L~l~~~~l~~~~~ 462 (507)
.+++|++|++++|.++..|.
T Consensus 170 ~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TCCCCCEEEEEEEEEECCCE
T ss_pred cCCCCCEEeCCCCcccCCcc
Confidence 78888888888887765544
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.2e-18 Score=156.77 Aligned_cols=171 Identities=22% Similarity=0.298 Sum_probs=108.6
Q ss_pred ccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcC
Q 010567 13 RLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 92 (507)
Q Consensus 13 ~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 92 (507)
.+++++.++++++.+.+++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|+.|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3455556666666666555 4566667777777777666665 46666677777777776666654 6666777777777
Q ss_pred CCcccccchhhhcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCcc
Q 010567 93 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 172 (507)
Q Consensus 93 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~ 172 (507)
+|+++.++. +.. ++|++|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+ ..
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~ 167 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GG 167 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TT
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HH
Confidence 776666554 223 66666666666666654 3566666666666666666654 456666666666666666655 44
Q ss_pred ccCCCCCCEEEcCCCccccc
Q 010567 173 LGKLSKLGTLDLHSNQLKEY 192 (507)
Q Consensus 173 l~~~~~L~~L~l~~~~~~~~ 192 (507)
+..+++|+.|++++|++...
T Consensus 168 l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp STTCCCCCEEEEEEEEEECC
T ss_pred hccCCCCCEEeCCCCcccCC
Confidence 56666666666666655443
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=7.3e-18 Score=168.90 Aligned_cols=171 Identities=26% Similarity=0.373 Sum_probs=102.3
Q ss_pred cccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccC
Q 010567 281 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 360 (507)
Q Consensus 281 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 360 (507)
.+++.|.++++.+..++ .+..+++|+.|++++|.+.+++. +..+++|++|++++|.+.+++ .+..+++|+.|++++
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH 118 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTT
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecC
Confidence 34556666666665554 35556666666666666666554 556666666666666665543 245566666666666
Q ss_pred CCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCcccccccc
Q 010567 361 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 440 (507)
Q Consensus 361 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~~~ 440 (507)
|.+..++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+..++. +..+++|+.|++++|.++.+| .
T Consensus 119 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~ 192 (605)
T 1m9s_A 119 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-A 192 (605)
T ss_dssp SCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-G
T ss_pred CCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-H
Confidence 6665543 255666666666666665554 345566666666666666665544 555666666666666666653 3
Q ss_pred ccCCCCCCeEeCCCCCCCCCC
Q 010567 441 FKNLTSLTELDLSDNNISALP 461 (507)
Q Consensus 441 ~~~l~~L~~L~l~~~~l~~~~ 461 (507)
+..+++|+.|++++|++...|
T Consensus 193 l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GTTCTTCSEEECCSEEEECCC
T ss_pred HccCCCCCEEEccCCcCcCCc
Confidence 556666666666666555433
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.1e-17 Score=145.36 Aligned_cols=168 Identities=32% Similarity=0.403 Sum_probs=141.2
Q ss_pred ccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCc
Q 010567 306 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 385 (507)
Q Consensus 306 L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 385 (507)
-+.++.+++.+..+|..+ .++|++|++++|.+..++...+..+++|++|++++|.++.++...+..+++|+.|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 357788888888888654 468999999999999888877888999999999999999988887889999999999999
Q ss_pred ccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCcccccccc-ccCCCCCCeEeCCCCCCCCCCCc
Q 010567 386 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 463 (507)
Q Consensus 386 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~ 463 (507)
.+....+..+..+++|+.|++++|+++.++.. +..+++|++|++++|.++.++.. +.++++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 98887777788899999999999999977765 67889999999999999888654 7889999999999996552
Q ss_pred ccCCCccCceEeccCCCCC
Q 010567 464 LGLLEPSLQALRLDGNPLR 482 (507)
Q Consensus 464 ~~~~~~~L~~L~l~~n~~~ 482 (507)
.+++|+.|++++|.++
T Consensus 163 ---~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHS 178 (208)
T ss_dssp ---CTTTTHHHHHHHHHCT
T ss_pred ---CCCCHHHHHHHHHhCC
Confidence 2367888888777766
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=3.2e-17 Score=154.45 Aligned_cols=196 Identities=19% Similarity=0.245 Sum_probs=141.5
Q ss_pred cEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCc-cccCCCCCcEEEcCCCccc-ccchhhhcCccccce-eecCC
Q 010567 41 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLT-VLSNNLIASWTMLTE-LIASK 117 (507)
Q Consensus 41 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~-L~l~~ 117 (507)
+++++++++++++|..+. +++++|++++|.++.++. .|.++++|++|++++|++. .++..+|.+++++.+ +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 567788888888887663 578888888888888875 5788888888888888864 467777888887765 45566
Q ss_pred ccccccc-ccccCCCcccEEeccCCccccCCC-CCcCCCCCcEEEcCC-CCCccCCc-cccCC-CCCCEEEcCCCccccc
Q 010567 118 NLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGN-NALSALPA-ELGKL-SKLGTLDLHSNQLKEY 192 (507)
Q Consensus 118 ~~~~~~~-~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~-~~~~~l~~-~l~~~-~~L~~L~l~~~~~~~~ 192 (507)
|.+..++ ..+..+++|++|++++|.+..++. .+....++..+++.+ +.+..++. .+..+ ..++.|++++|++..+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 7777764 567788888888888888876654 344556677777755 35665543 34444 3577888888888887
Q ss_pred chhhhcc-ccCeEECCC-CCCCCCCcc-ccCCCCccEEEccCCcccccc
Q 010567 193 CVEACQL-RLSVLDLSN-NSLSGLPPE-IGKMTTLRKLLLTGNPLRTLR 238 (507)
Q Consensus 193 ~~~~~~~-~L~~l~l~~-~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~ 238 (507)
+...+.. +++.+++++ +.++.+|.. +..+++|+.|++++|.++.++
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 7765543 388888874 667777754 678888888888888775544
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3e-17 Score=144.61 Aligned_cols=153 Identities=27% Similarity=0.286 Sum_probs=137.3
Q ss_pred CcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEccc
Q 010567 329 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 408 (507)
Q Consensus 329 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 408 (507)
-+.++.+++.++.++... .++|+.|++++|.++++++..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467888888888877643 48999999999999999888899999999999999999888878889999999999999
Q ss_pred ccCcccccc-hhccCCCcEEEcCCCccccccccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCc
Q 010567 409 MQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 484 (507)
Q Consensus 409 ~~i~~l~~~-~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 484 (507)
|+++.++.. +..+++|++|++++|.++.+|..+.++++|++|++++|+++.+++..+..+++|+.|++++|++..-
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999988765 5789999999999999999999999999999999999999998876555559999999999998743
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=3.6e-17 Score=143.03 Aligned_cols=150 Identities=25% Similarity=0.370 Sum_probs=104.5
Q ss_pred cEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcc
Q 010567 307 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 386 (507)
Q Consensus 307 ~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 386 (507)
+.++.+++.+..+|..+. +++++|++++|.+..++...|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567777777887776543 577778888777777766666777777777777777777766667777777777777777
Q ss_pred cCCCCCCCCCCCCcCcEEEcccccCcccc-cchhccCCCcEEEcCCCccccccc-cccCCCCCCeEeCCCCCCC
Q 010567 387 ASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNIS 458 (507)
Q Consensus 387 ~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~ 458 (507)
+....+..+..+++|+.|++++|+++.++ ..+..+++|++|++++|.++.++. .+..+++|++|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 76666656666777777777777776553 345666777777777777766643 3666677777777776553
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=5.2e-17 Score=141.97 Aligned_cols=151 Identities=26% Similarity=0.395 Sum_probs=130.2
Q ss_pred cceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCc-cccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCC
Q 010567 283 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 361 (507)
Q Consensus 283 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 361 (507)
-+.++.+++.++.+|..+. ++++.|++++|.+..++. .+..+++|++|++++|.+..+.+..|..+++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4678888888888887654 689999999999888765 5788899999999999998887777888999999999999
Q ss_pred CCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCccc
Q 010567 362 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 435 (507)
Q Consensus 362 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~ 435 (507)
.++.++...|..+++|+.|++++|.+....+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99988888888899999999999999888888888999999999999999977654 777889999999998776
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=142.69 Aligned_cols=150 Identities=25% Similarity=0.304 Sum_probs=83.4
Q ss_pred ceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCc--cccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCC
Q 010567 284 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 361 (507)
Q Consensus 284 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 361 (507)
+.++++++.++.+|..+. ..++.|++++|.+..++. .+..+++|++|++++|.++.+.+..|..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 456666666665555332 334566666666555422 2455556666666666555555545555566666666666
Q ss_pred CCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCccc-ccchhccCCCcEEEcCCCccc
Q 010567 362 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ 435 (507)
Q Consensus 362 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~ 435 (507)
.++.++...|..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.+ |..+..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55555555555555555555555555555555555555555555555555544 334455555555555555443
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=2.4e-17 Score=155.95 Aligned_cols=175 Identities=28% Similarity=0.430 Sum_probs=154.9
Q ss_pred ccceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCcc-cc-CCCcCcEEecccCcccCCchHHhhcCCCCCEEEcc
Q 010567 282 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LS-SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 359 (507)
Q Consensus 282 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~-~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 359 (507)
..+.++++++.+..+|..+. ..++.|++++|.+..++.. +. .+++|++|++++|.+..+.+..|..+++|++|+++
T Consensus 19 ~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp ETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34688999999999987653 5689999999999997655 55 89999999999999999988888999999999999
Q ss_pred CCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccch----hccCCCcEEEcCCCccc
Q 010567 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI----LRLQQLRILDLSQNSLQ 435 (507)
Q Consensus 360 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~----~~~~~L~~L~l~~~~l~ 435 (507)
+|.++.++...|..+++|+.|++++|.+....+..+..+++|+.|++++|+++.+|... ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99999999888999999999999999999888889999999999999999999988775 56899999999999999
Q ss_pred ccc-ccccCCCC--CCeEeCCCCCCC
Q 010567 436 SIP-EGFKNLTS--LTELDLSDNNIS 458 (507)
Q Consensus 436 ~l~-~~~~~l~~--L~~L~l~~~~l~ 458 (507)
.+| ..+..++. ++.|++.+|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 987 45777887 489999999764
No 116
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.70 E-value=1.2e-15 Score=146.19 Aligned_cols=121 Identities=19% Similarity=0.303 Sum_probs=66.1
Q ss_pred ccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCc
Q 010567 323 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 402 (507)
Q Consensus 323 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 402 (507)
+..+..++.+...... ++...|..+.+|+.+.+.++ ++.++..+|.+|++|+.+++..+ +......+|.+|.+|+
T Consensus 272 F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~ 346 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLS 346 (394)
T ss_dssp TTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCC
T ss_pred cccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCC
Confidence 4445555555444332 22233455666666666543 55566566666666666666532 4444455566666666
Q ss_pred EEEcccccCccccc-chhccCCCcEEEcCCCccccccccccCCCCCCeE
Q 010567 403 ELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTEL 450 (507)
Q Consensus 403 ~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L 450 (507)
.+++..+ ++.+.. ++.+|++|+.+++..+ ++.+...+.+|++|+.+
T Consensus 347 ~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 347 NINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred EEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 6666544 444433 3556666666666543 33444556666666654
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=138.47 Aligned_cols=151 Identities=23% Similarity=0.367 Sum_probs=136.2
Q ss_pred ccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCc-hHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccC
Q 010567 306 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 384 (507)
Q Consensus 306 L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 384 (507)
-+.++++++.+..+|..+. +.+++|++++|.++... ...|..+++|++|++++|.++.++...|..+++|+.|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3589999999999997653 56789999999999874 45578999999999999999999988899999999999999
Q ss_pred cccCCCCCCCCCCCCcCcEEEcccccCccc-ccchhccCCCcEEEcCCCccccc-cccccCCCCCCeEeCCCCCCC
Q 010567 385 NIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS 458 (507)
Q Consensus 385 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~l~ 458 (507)
|.+....+..+..+++|++|++++|+++.+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 999998888899999999999999999977 56688999999999999999988 788999999999999999875
No 118
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=6e-15 Score=141.33 Aligned_cols=162 Identities=14% Similarity=0.196 Sum_probs=103.2
Q ss_pred CCCccEEEcCCCccCcCC-ccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEE
Q 010567 303 AGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 381 (507)
Q Consensus 303 ~~~L~~L~l~~~~~~~i~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 381 (507)
..+|+.+.+.... ..+. ..+..+..++.+.+..+ ...+....|..+..++.+..... .++..+|..+.+|+.+.
T Consensus 229 ~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~---~i~~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 229 KTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSV---IVPEKTFYGCSSLTEVK 303 (394)
T ss_dssp TCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSS---EECTTTTTTCTTCCEEE
T ss_pred cCCCceEEECCCc-eecccccccccccceeEEcCCC-cceeeccccccccccceeccCce---eeccccccccccccccc
Confidence 3455555554332 2222 23566777777777654 33344455677788888777654 24555677888888888
Q ss_pred ccCcccCCCCCCCCCCCCcCcEEEcccccCccccc-chhccCCCcEEEcCCCcccccc-ccccCCCCCCeEeCCCCCCCC
Q 010567 382 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISA 459 (507)
Q Consensus 382 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~l~~ 459 (507)
+.++ +......+|.+|.+|+.+++.++ ++.+.. ++.+|++|+.+.+..+ ++.++ .+|.+|++|+.+++..+ ++.
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~ 379 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ 379 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE
Confidence 8654 55556667888888888888643 665543 4667888888888765 67774 46788888888888654 333
Q ss_pred CCCcccCCCccCceE
Q 010567 460 LPPELGLLEPSLQAL 474 (507)
Q Consensus 460 ~~~~~~~~~~~L~~L 474 (507)
+... +..|++|+.+
T Consensus 380 ~~~~-F~~c~~L~~I 393 (394)
T 4fs7_A 380 YRYD-FEDTTKFKWI 393 (394)
T ss_dssp GGGG-BCTTCEEEEE
T ss_pred hhhe-ecCCCCCcEE
Confidence 3332 4445677654
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.6e-18 Score=172.59 Aligned_cols=107 Identities=25% Similarity=0.222 Sum_probs=75.7
Q ss_pred cccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCcccccchhhhccccCeEECCCCCC
Q 010567 132 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSL 211 (507)
Q Consensus 132 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~~ 211 (507)
.|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|+.|++++|+++.++......+|+.|++++|.+
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence 46777777777777765 77777777777777777777777777777777777777777766222223377777777777
Q ss_pred CCC--CccccCCCCccEEEccCCccccccc
Q 010567 212 SGL--PPEIGKMTTLRKLLLTGNPLRTLRS 239 (507)
Q Consensus 212 ~~~--~~~l~~l~~L~~L~l~~~~~~~~~~ 239 (507)
+++ |..++.+++|+.|++++|+++..++
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 776 6667777777777777777765543
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.8e-18 Score=172.34 Aligned_cols=118 Identities=22% Similarity=0.289 Sum_probs=63.3
Q ss_pred cceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCCcEEEcCCCCCccCCccccCCCCCCEEEcCCCcc
Q 010567 110 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 189 (507)
Q Consensus 110 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 189 (507)
|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+| .++.+++|+.|++++|++
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 5555555555555554 55555555555555555555555555555555555555555554 455555555555555555
Q ss_pred ccc--chhhhccc-cCeEECCCCCCCCCCcc----ccCCCCccEEEc
Q 010567 190 KEY--CVEACQLR-LSVLDLSNNSLSGLPPE----IGKMTTLRKLLL 229 (507)
Q Consensus 190 ~~~--~~~~~~~~-L~~l~l~~~~~~~~~~~----l~~l~~L~~L~l 229 (507)
..+ +....... |+.|++++|.++++|+. +..+++|+.|++
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 554 33333322 55555555555554332 233667777653
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.1e-16 Score=130.33 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=81.8
Q ss_pred CCcccEEeCCCCCCC--CCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcCCCcccccchhhhcCccccceee
Q 010567 37 ATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 114 (507)
Q Consensus 37 ~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 114 (507)
.++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|++....+..+.++++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 355666666666655 5555555666666666666666655 5555666666666666666653334455566666666
Q ss_pred cCCccccccc--ccccCCCcccEEeccCCccccCCC----CCcCCCCCcEEEcCCCCCccCCc
Q 010567 115 ASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSIPS----SISGCCSLAEFYMGNNALSALPA 171 (507)
Q Consensus 115 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~l~~----~~~~~~~L~~L~l~~~~~~~l~~ 171 (507)
+++|.+..++ ..+..+++|+.|++++|.+..++. .+..+++|++|++++|.+..+|+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 6666665554 456666666666666666666654 45666666666666666665554
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.7e-16 Score=148.30 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=62.4
Q ss_pred CCCccEEEcCCCccCcCCcc-ccCCCcCcEEecccCcccCCchHHhhcCCCCC-EEEccCCCCCCCCccccCCCCCceEE
Q 010567 303 AGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLS-CLKLDNNPLRQVPSDGFKDIPMLQIL 380 (507)
Q Consensus 303 ~~~L~~L~l~~~~~~~i~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~L~~L 380 (507)
+++|+++++++|.+..+|.. |..+.+|+.+++.++ +..+....|..|++|+ .+++.+ .++.++..+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 45666666666666665543 566666666666664 5555666666666666 666665 5666666666666666666
Q ss_pred EccCcccCCCCCCCCCCCCcCcEEE
Q 010567 381 DLSYNIASLPENPPFSSLPHLQELY 405 (507)
Q Consensus 381 ~l~~~~~~~~~~~~~~~~~~L~~L~ 405 (507)
++.++.+......+|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 6666655555555666666666554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=7.7e-16 Score=128.69 Aligned_cols=136 Identities=19% Similarity=0.153 Sum_probs=93.4
Q ss_pred ccCCCCEEEcCCCccc--ccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCcc-CCccccCCCCCcEE
Q 010567 13 RLHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS-LPEDLADCSKMSKL 89 (507)
Q Consensus 13 ~~~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L 89 (507)
..++|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3466777777777776 6666666777777777777777666 556667777777777777775 55555567777777
Q ss_pred EcCCCcccccch-hhhcCccccceeecCCcccccccc----cccCCCcccEEeccCCccccCCCC
Q 010567 90 DVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPE----TIGSLSRLIRLDLHQNRILSIPSS 149 (507)
Q Consensus 90 ~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~i~~l~~~ 149 (507)
++++|.++.++. ..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..+|..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 777777776543 446777777777777777766654 566677777777777766666543
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=2e-14 Score=136.96 Aligned_cols=178 Identities=13% Similarity=0.193 Sum_probs=135.2
Q ss_pred hcCCCccEEEcCCCccCcCCc-cccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceE
Q 010567 301 WEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 379 (507)
Q Consensus 301 ~~~~~L~~L~l~~~~~~~i~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 379 (507)
+.+.+|+.+.+.++ +..++. .|..+++|+.+++.. .++.+....|.. .+|+.+.+. +.++.++..+|.+|++|+.
T Consensus 200 F~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAE 275 (401)
T ss_dssp TTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCE
T ss_pred EeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCE
Confidence 33467777777644 555543 478888888888876 466666777776 789999995 4578888888999999999
Q ss_pred EEccCcccC-----CCCCCCCCCCCcCcEEEcccccCccccc-chhccCCCcEEEcCCCcccccc-ccccCCCCCCeEeC
Q 010567 380 LDLSYNIAS-----LPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDL 452 (507)
Q Consensus 380 L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l 452 (507)
+.+.++... .....+|.+|++|+.+++.+ .++.++. .+.+|++|+.+.+.++ ++.++ .+|.+| +|+.+++
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEE
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEE
Confidence 999887554 45667889999999999984 5776655 4677899999999655 77774 568899 9999999
Q ss_pred CCCCCCCCCCcccCCC-ccCceEeccCCCCCCcc
Q 010567 453 SDNNISALPPELGLLE-PSLQALRLDGNPLRSIR 485 (507)
Q Consensus 453 ~~~~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~ 485 (507)
.+|.+..+++..+..+ .+++.|++..+.+....
T Consensus 353 ~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y~ 386 (401)
T 4fdw_A 353 EGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYK 386 (401)
T ss_dssp CCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHHH
T ss_pred cCCCCcccccccccCCCCCccEEEeCHHHHHHhh
Confidence 9998887777665544 47889998887655443
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=4.9e-16 Score=145.07 Aligned_cols=166 Identities=19% Similarity=0.264 Sum_probs=137.0
Q ss_pred CCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcc----cCCCCCCCC------
Q 010567 326 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI----ASLPENPPF------ 395 (507)
Q Consensus 326 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~------ 395 (507)
+++|+.+++.+ .++.+....|..|++|+++++.++.+..++..+|..+.++..+...... ........|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 89999999988 8888888889999999999999998888888889888888888766521 111111111
Q ss_pred --------------------------------------------CCCCcCcEEEcccccCcccccc-hhccCCCcEEEcC
Q 010567 396 --------------------------------------------SSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLS 430 (507)
Q Consensus 396 --------------------------------------------~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~ 430 (507)
..+++|+.+++.+|+++.++.. +.+|++|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0278999999999999988775 7789999999999
Q ss_pred CCcccccc-ccccCCCCCC-eEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCccHHHHhhhHH
Q 010567 431 QNSLQSIP-EGFKNLTSLT-ELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTK 494 (507)
Q Consensus 431 ~~~l~~l~-~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 494 (507)
+| ++.++ .+|.+|++|+ .+++.+ +++.+++..+..|++|+.|++.+|.++.|.+.+|.+++.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc
Confidence 98 88885 5689999999 999999 788998888888899999999999999999999987643
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.3e-15 Score=123.02 Aligned_cols=126 Identities=18% Similarity=0.189 Sum_probs=74.0
Q ss_pred ccCCCCEEEcCCCccc--ccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCcc-CCccccCCCCCcEE
Q 010567 13 RLHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS-LPEDLADCSKMSKL 89 (507)
Q Consensus 13 ~~~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L 89 (507)
..++|+.|+++++.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3456666666666665 5565556666666666666666655 445566666666666666665 55555556666666
Q ss_pred EcCCCcccccc-hhhhcCccccceeecCCcccccccc----cccCCCcccEEecc
Q 010567 90 DVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMPE----TIGSLSRLIRLDLH 139 (507)
Q Consensus 90 ~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~ 139 (507)
++++|++++++ ...+..+++|++|++++|.+..++. .+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666665543 1335555666666666665555443 34555555555543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.4e-15 Score=122.02 Aligned_cols=126 Identities=22% Similarity=0.209 Sum_probs=97.1
Q ss_pred CCCCCEEEccCCCCC--CCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcc-cccchhccCCCcE
Q 010567 350 LSSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI 426 (507)
Q Consensus 350 ~~~L~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~~~~~~~~L~~ 426 (507)
.++++.|++++|.++ .++. .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.. +|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 356777777777776 4443 467778888888888877665 567788888888888888886 7776777889999
Q ss_pred EEcCCCcccccc--ccccCCCCCCeEeCCCCCCCCCCC---cccCCCccCceEeccC
Q 010567 427 LDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPP---ELGLLEPSLQALRLDG 478 (507)
Q Consensus 427 L~l~~~~l~~l~--~~~~~l~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~ 478 (507)
|++++|.++.+| ..+.++++|++|++++|.++.+++ .....+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999988765 778889999999999998887776 3333348899888764
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=4.2e-15 Score=125.09 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=84.8
Q ss_pred ccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcCCCcccccchhhhcCcccccee
Q 010567 34 IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 113 (507)
Q Consensus 34 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 113 (507)
+..+.+|+.|++++|.++.+|......++|++|++++|.++.+ ..+..+++|++|++++|+++.++...+..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4566677777777777776654333233777777777777766 566777777777777777777766656777777777
Q ss_pred ecCCcccccccc--cccCCCcccEEeccCCccccCCCC----CcCCCCCcEEEcCCCC
Q 010567 114 IASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIPSS----ISGCCSLAEFYMGNNA 165 (507)
Q Consensus 114 ~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~i~~l~~~----~~~~~~L~~L~l~~~~ 165 (507)
++++|.+..+|. .+..+++|+.|++++|++..+|.. +..+++|+.|+++++.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 777777766664 556666666666666666555543 4444444444444443
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.5e-14 Score=121.94 Aligned_cols=124 Identities=29% Similarity=0.486 Sum_probs=76.2
Q ss_pred cEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCccc
Q 010567 41 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 120 (507)
Q Consensus 41 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 120 (507)
+.++++++.++++|..+. ++|++|++++|.++.+|..+..+++|+.|++++|+++.++..+|.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456666666666665443 467777777777776666666677777777777777666666666666666666666666
Q ss_pred cccc-ccccCCCcccEEeccCCccccCCC-CCcCCCCCcEEEcCCCCC
Q 010567 121 NGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNAL 166 (507)
Q Consensus 121 ~~~~-~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~~ 166 (507)
+.++ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 5554 345555666666666665555543 244444555555544443
No 130
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.56 E-value=6e-13 Score=127.42 Aligned_cols=127 Identities=13% Similarity=0.250 Sum_probs=57.2
Q ss_pred ccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCc
Q 010567 323 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 402 (507)
Q Consensus 323 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 402 (507)
|..+..|+.+.+... +..+....|..++.|+.+.+. ..++.++..+|.+|++|+.+.+..+ +......+|.+|.+|+
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 455555555555432 223344445555666666654 2355555555666666666655432 3333444455555555
Q ss_pred EEEcccccCccccc-chhccCCCcEEEcCCCccccccccccCCCCCCeEeCCCC
Q 010567 403 ELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 455 (507)
Q Consensus 403 ~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~ 455 (507)
.+.+..+ ++.+.. .+.+|++|+.+++.++... + ..+..+++|+.+.+..+
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC--------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCC
Confidence 5555332 333322 2444555555555544221 1 23344445555444433
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=7.1e-14 Score=133.09 Aligned_cols=203 Identities=14% Similarity=0.220 Sum_probs=165.1
Q ss_pred ccceEEecCCCCCCCC-hhhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccC
Q 010567 282 TSKELSLEGMNLSAIP-SEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 360 (507)
Q Consensus 282 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 360 (507)
+++.+.+.+ .+..+. ..+..+++|+.+++.++.+..++...-.+.+|+.+.+.. .+..+....|..|++|+.+++.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence 345555554 344444 345568899999999999998877643468999999985 48888888899999999999987
Q ss_pred CCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCc-----ccc-cchhccCCCcEEEcCCCcc
Q 010567 361 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-----EAP-TDILRLQQLRILDLSQNSL 434 (507)
Q Consensus 361 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-----~l~-~~~~~~~~L~~L~l~~~~l 434 (507)
+ ++.++..+|.+ .+|+.+.+. +.+......+|..|++|+.+++.++.+. .++ ..+.+|++|+.+.+.+ .+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 4 78888888988 789999995 4566677788999999999999988765 344 4578899999999994 58
Q ss_pred cccc-ccccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCccHHHHhhh
Q 010567 435 QSIP-EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRG 492 (507)
Q Consensus 435 ~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 492 (507)
+.++ .+|.+|++|+.+.+..+ ++.+....+..| +|+.|++.+|....+.+.+|...
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 8885 56899999999999655 888888888887 99999999999999888877764
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=5.6e-15 Score=124.33 Aligned_cols=134 Identities=20% Similarity=0.223 Sum_probs=117.7
Q ss_pred hhcccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccc-cCCCCCcE
Q 010567 10 VFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDL-ADCSKMSK 88 (507)
Q Consensus 10 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~ 88 (507)
.+.++++|+.|++++|.+..++......++|++|++++|.++.+ ..+..+++|++|++++|.++.++..+ ..+++|++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 45678999999999999998865444455999999999999988 57889999999999999999887654 89999999
Q ss_pred EEcCCCcccccch-hhhcCccccceeecCCccccccccc----ccCCCcccEEeccCCccc
Q 010567 89 LDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPET----IGSLSRLIRLDLHQNRIL 144 (507)
Q Consensus 89 L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~i~ 144 (507)
|++++|++++++. ..+..+++|++|++++|.+..+|.. +..+++|+.|+++++...
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999998775 4588999999999999999888874 889999999999998765
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=3.5e-14 Score=121.17 Aligned_cols=125 Identities=22% Similarity=0.392 Sum_probs=85.5
Q ss_pred cEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCcc--ccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCc
Q 010567 41 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED--LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 118 (507)
Q Consensus 41 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 118 (507)
++++++++.++++|..+.. ++++|++++|.++.++.. +..+++|++|++++|+++.+....|.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5666777777666664443 677777777777666542 666777777777777777666666777777777777777
Q ss_pred cccccc-ccccCCCcccEEeccCCccccC-CCCCcCCCCCcEEEcCCCCCc
Q 010567 119 LLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS 167 (507)
Q Consensus 119 ~~~~~~-~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~~~ 167 (507)
.+..++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 776654 3466677777777777777754 556777777777777777665
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=4e-15 Score=153.00 Aligned_cols=113 Identities=33% Similarity=0.503 Sum_probs=59.5
Q ss_pred CccccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCcccccccccccCCCcccEEeccCCccccCCCCCcCCCCC
Q 010567 77 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 156 (507)
Q Consensus 77 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L 156 (507)
+..+..+++|+.|++++|.+..++.. +.++++|++|++++|.+..+|..+..+++|+.|++++|.++.+|..+..+++|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 34444555555555555555554444 22555555555555555555555555555555555555555555555555555
Q ss_pred cEEEcCCCCCccCCccccCCCCCCEEEcCCCccc
Q 010567 157 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 190 (507)
Q Consensus 157 ~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~ 190 (507)
++|++++|.++.+|..++.+++|++|++++|.+.
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 5555555555555555555555555555555554
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=2.9e-14 Score=146.59 Aligned_cols=134 Identities=34% Similarity=0.447 Sum_probs=98.5
Q ss_pred CccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCccccccccccCCCC
Q 010567 367 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTS 446 (507)
Q Consensus 367 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~~ 446 (507)
+...+..++.|+.|+|++|.+.. .+..+..+++|++|+|++|.|+.+|..+..+++|++|++++|.++.+|..+.++++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 34446667777777777776653 33334467888888888888888888888888899999998888888888888888
Q ss_pred CCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCccHHHHhhhHHH-HHHHHHh
Q 010567 447 LTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKA-VLKYLKD 502 (507)
Q Consensus 447 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-~~~~~~~ 502 (507)
|++|+|++|.++.+|..+..+ ++|+.|+|++|+++...+..+...... .+.++.+
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~ 350 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNL-CNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRD 350 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSC-TTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCCccChhhhcC-CCccEEeCCCCccCCCChHHHhhcchhhhHHhhcc
Confidence 999999988888888876665 888999999998887777777665333 2334443
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=6e-14 Score=119.59 Aligned_cols=125 Identities=24% Similarity=0.337 Sum_probs=67.6
Q ss_pred EEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCccc
Q 010567 308 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 387 (507)
Q Consensus 308 ~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~ 387 (507)
.++++++.+..+|..+. ++|++|++++|.+..++ ..|..+++|+.|++++|.++.++...|..+++|+.|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 34444444444443321 34555555555555444 3345555555555555555555555555555555555555555
Q ss_pred CCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCccc
Q 010567 388 SLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 435 (507)
Q Consensus 388 ~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~ 435 (507)
....+..+..+++|+.|++++|.|+.++.. +..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555555555566666666666666655543 445566666666666543
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.53 E-value=9.4e-13 Score=126.03 Aligned_cols=131 Identities=15% Similarity=0.258 Sum_probs=93.7
Q ss_pred hhhcCCCccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCce
Q 010567 299 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 378 (507)
Q Consensus 299 ~~~~~~~L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~ 378 (507)
.+..+..|+.+.+.+....--...|..+..|+.+.+. ..++.+....|..|.+|+++++..+ ++.++..+|.+|++|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 3455778888888765433223457888999999986 4677778888999999999999864 8888888999999999
Q ss_pred EEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccchhccCCCcEEEcCCCcc
Q 010567 379 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSL 434 (507)
Q Consensus 379 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l 434 (507)
.+.+..+ +......+|.+|++|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence 9999754 666777889999999999998874332 3456678888888876643
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=5.9e-14 Score=119.71 Aligned_cols=127 Identities=23% Similarity=0.302 Sum_probs=65.5
Q ss_pred ceEEecCCCCCCCChhhhcCCCccEEEcCCCccCcCCcc--ccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCC
Q 010567 284 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 361 (507)
Q Consensus 284 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~i~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 361 (507)
+.++++++.+..+|..+. .++++|++++|.+..++.. +..+++|++|++++|.++++.+..|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 455555555555554332 2555555555555554432 445555555555555555554444455555555555555
Q ss_pred CCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCc
Q 010567 362 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 412 (507)
Q Consensus 362 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 412 (507)
.+++++...|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555555444555555555555555544444444444455555555554443
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=2.8e-13 Score=114.02 Aligned_cols=129 Identities=29% Similarity=0.378 Sum_probs=86.7
Q ss_pred CEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCC
Q 010567 354 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQN 432 (507)
Q Consensus 354 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~ 432 (507)
+.++++++.++.++.. ..++|+.|++++|.+.+..+..+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4566666666655532 125666666666666655555566677777777777777766554 466777777777777
Q ss_pred ccccccc-cccCCCCCCeEeCCCCCCCCCCCcccCCCccCceEeccCCCCCCcc
Q 010567 433 SLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 485 (507)
Q Consensus 433 ~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 485 (507)
.++.+|. .+.++++|++|++++|+++.+++..+..+++|+.|++++|++...-
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 7777654 3577778888888888777777765444477888888888776543
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=2.6e-13 Score=114.30 Aligned_cols=127 Identities=28% Similarity=0.411 Sum_probs=60.6
Q ss_pred cEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcc
Q 010567 307 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 386 (507)
Q Consensus 307 ~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 386 (507)
+.++++++.+..+|..+ .++|++|++++|.+.+++...+..+++|++|++++|.++.++...+..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 34444444444444322 2345555555555554444444455555555555555555544444445555555555554
Q ss_pred cCCCCCCCCCCCCcCcEEEcccccCcccccc-hhccCCCcEEEcCCCccc
Q 010567 387 ASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 435 (507)
Q Consensus 387 ~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~ 435 (507)
+++..+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 4444443444444555555555544444433 233444445555444443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=8.1e-16 Score=132.24 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=85.2
Q ss_pred hcccCCCCEEEcCCCccc-------ccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCC
Q 010567 11 FDRLHMLKSLDVSFNSIM-------KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC 83 (507)
Q Consensus 11 ~~~~~~L~~L~l~~~~i~-------~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~ 83 (507)
+...+.++.++++++.+. .+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 92 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVA 92 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcC
Confidence 444555555555554443 33336667777777777777777766 6677777777777777777776666666
Q ss_pred CCCcEEEcCCCcccccchhhhcCccccceeecCCcccccccc--cccCCCcccEEeccCCccc
Q 010567 84 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRIL 144 (507)
Q Consensus 84 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~i~ 144 (507)
++|+.|++++|+++.++ .+..+++|++|++++|.+..++. .+..+++|++|++++|++.
T Consensus 93 ~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 77777777777777654 26667777777777777665543 4566666677776666654
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=3.1e-15 Score=128.58 Aligned_cols=129 Identities=24% Similarity=0.268 Sum_probs=114.0
Q ss_pred cHHhhcccCCCCEEEcCCCcccccCccccCCCcccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccCCccccCCCCC
Q 010567 7 LLYVFDRLHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 86 (507)
Q Consensus 7 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 86 (507)
++..|.++++|++|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++ .+..+++|
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred hhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 4559999999999999999999888 888999999999999999999998888899999999999999886 68899999
Q ss_pred cEEEcCCCcccccch-hhhcCccccceeecCCccccccc-c----------cccCCCcccEEe
Q 010567 87 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMP-E----------TIGSLSRLIRLD 137 (507)
Q Consensus 87 ~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~----------~~~~~~~L~~L~ 137 (507)
+.|++++|+++.++. ..+..+++|++|++++|.+...+ . .+..+++|+.|+
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999999998765 56899999999999999885542 2 266778888776
No 143
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.39 E-value=8.5e-11 Score=111.96 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=73.5
Q ss_pred ccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCc
Q 010567 323 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 402 (507)
Q Consensus 323 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 402 (507)
+..+..|+.+.+.. .+..+....|..+..|+.+.+..+ ++.++..+|.++.+|+.+.+..+ +.......|..|++|+
T Consensus 213 f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 33444444444432 233333344455555666655543 45555555666666666665432 3333444556666666
Q ss_pred EEEcccccCccccc-chhccCCCcEEEcCCCcccccc-ccccCCCCCCeEeCCCCCCCCCCCcccCC
Q 010567 403 ELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLL 467 (507)
Q Consensus 403 ~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 467 (507)
.+.+.++.++.++. .+.+|.+|+.+.+.++ +++++ .+|.+|++|+.+.+..+ ++.+.+..+..
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 66666655555443 3455666666666543 55553 34666666666666443 55555544444
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.37 E-value=5.5e-11 Score=113.24 Aligned_cols=130 Identities=13% Similarity=0.201 Sum_probs=62.8
Q ss_pred CCCccEEEcCCCccCcC-CccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEE
Q 010567 303 AGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 381 (507)
Q Consensus 303 ~~~L~~L~l~~~~~~~i-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 381 (507)
+.+++.+.+... +..+ ...+..+..|+.+.+..+ ++.+....|..+.+|+.+.+.. .+..++..+|..|++|+.+.
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccc
Confidence 444555554433 2222 222445555555555442 4444444455555555555543 24445555555555555555
Q ss_pred ccCcccCCCCCCCCCCCCcCcEEEcccccCccccc-chhccCCCcEEEcCCCccccc
Q 010567 382 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSI 437 (507)
Q Consensus 382 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~l 437 (507)
+.++.+......+|.+|.+|+.+++..+ ++.+.. ++.+|++|+.+.+..+ ++.+
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 5555444444555555555555555432 343332 2445555555555432 4444
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=7.3e-12 Score=104.27 Aligned_cols=103 Identities=27% Similarity=0.406 Sum_probs=58.7
Q ss_pred ccEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCc
Q 010567 40 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 118 (507)
Q Consensus 40 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 118 (507)
.+.++++++.++++|..+. ++|++|++++|.++.+ +..|..+++|++|++++|+++.++...|.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4556666666666655442 4566666666666655 344556666666666666666655555555666666666665
Q ss_pred ccccccc-cccCCCcccEEeccCCccc
Q 010567 119 LLNGMPE-TIGSLSRLIRLDLHQNRIL 144 (507)
Q Consensus 119 ~~~~~~~-~~~~~~~L~~L~l~~~~i~ 144 (507)
.+..++. .+..+++|+.|++++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555543 3455555555555555443
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=6.9e-12 Score=104.77 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=52.0
Q ss_pred cEEeCCCCCCCCCchhhhcccCCCeEEcCCCcCccC-CccccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCcc
Q 010567 41 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 119 (507)
Q Consensus 41 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 119 (507)
+.++++++.++++|..+. ++|++|++++|.++.+ +..|..+++|+.|++++|+++.++...|.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455555555555554433 4555555555555544 3345555555555555555555555444555555555555555
Q ss_pred ccccccc-ccCCCcccEEeccCCccc
Q 010567 120 LNGMPET-IGSLSRLIRLDLHQNRIL 144 (507)
Q Consensus 120 ~~~~~~~-~~~~~~L~~L~l~~~~i~ 144 (507)
+..++.. +..+++|+.|++++|++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 5444432 444444444444444443
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1.2e-13 Score=130.26 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=116.8
Q ss_pred CCCccEEEcCCCccCc-----CCcccc-CCCcCcEEecccCcccCCchHH-hhcCCCCCEEEccCCCCCCCCcccc----
Q 010567 303 AGEITKLDLSRNSIQE-----LPPELS-SCASLQTLILSRNKIKDWPDAI-LTSLSSLSCLKLDNNPLRQVPSDGF---- 371 (507)
Q Consensus 303 ~~~L~~L~l~~~~~~~-----i~~~~~-~~~~L~~L~l~~~~l~~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~---- 371 (507)
.+.++.|++++|.+.. +...+. ..++|++|++++|.+++..... ...+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999876 222233 3368999999999887643332 2346789999999999876544433
Q ss_pred -CCCCCceEEEccCcccCCCCC----CCCCCCCcCcEEEcccccCcc-----cccchhccCCCcEEEcCCCcccc-----
Q 010567 372 -KDIPMLQILDLSYNIASLPEN----PPFSSLPHLQELYLRRMQLRE-----APTDILRLQQLRILDLSQNSLQS----- 436 (507)
Q Consensus 372 -~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~l~~----- 436 (507)
...++|+.|++++|.++.... ..+..+++|++|++++|.|.. +...+..+++|++|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 357889999999998765322 223567889999999998872 34556677899999999998873
Q ss_pred ccccccCCCCCCeEeCCCCCCCC
Q 010567 437 IPEGFKNLTSLTELDLSDNNISA 459 (507)
Q Consensus 437 l~~~~~~l~~L~~L~l~~~~l~~ 459 (507)
++..+..+++|++|++++|.|+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 45567778999999999998873
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.8e-11 Score=101.87 Aligned_cols=105 Identities=27% Similarity=0.376 Sum_probs=65.8
Q ss_pred ccEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCc
Q 010567 306 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 385 (507)
Q Consensus 306 L~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~ 385 (507)
.+.++++++.+..+|..+. ++|++|++++|.++.+.+..|..+++|++|++++|.++.++...|..+++|+.|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3456666666666665432 56666666666666666555666666666666666666666655666666666666666
Q ss_pred ccCCCCCCCCCCCCcCcEEEcccccCc
Q 010567 386 IASLPENPPFSSLPHLQELYLRRMQLR 412 (507)
Q Consensus 386 ~~~~~~~~~~~~~~~L~~L~l~~~~i~ 412 (507)
.+....+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666555555666666666666666554
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=2.2e-11 Score=101.69 Aligned_cols=106 Identities=23% Similarity=0.334 Sum_probs=69.8
Q ss_pred cEEEcCCCccCcCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccCcc
Q 010567 307 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 386 (507)
Q Consensus 307 ~~L~l~~~~~~~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 386 (507)
+.++++++.+..+|..+. ++|++|++++|.+.++++..|..+++|+.|++++|.+++++...|..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666665443 667777777777776666666667777777777777777666656666666666666666
Q ss_pred cCCCCCCCCCCCCcCcEEEcccccCccc
Q 010567 387 ASLPENPPFSSLPHLQELYLRRMQLREA 414 (507)
Q Consensus 387 ~~~~~~~~~~~~~~L~~L~l~~~~i~~l 414 (507)
+....+..+..+++|+.|++++|.+...
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccc
Confidence 6655555566666666666666666533
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=3.4e-12 Score=120.27 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=77.5
Q ss_pred cCCCeEEcCCCcCcc-----CCccccC-CCCCcEEEcCCCcccccchh-hhcCccccceeecCCcccccc-----cccc-
Q 010567 61 LNLSDFKASNNCITS-----LPEDLAD-CSKMSKLDVEGNKLTVLSNN-LIASWTMLTELIASKNLLNGM-----PETI- 127 (507)
Q Consensus 61 ~~L~~L~l~~~~~~~-----l~~~~~~-~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~-----~~~~- 127 (507)
+.|++|++++|.++. +...+.. .++|++|++++|.+++.... ....+++|++|++++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 355666666665552 1112221 24566666666655532211 122345566666666655332 1112
Q ss_pred cCCCcccEEeccCCcccc-----CCCCCcCCCCCcEEEcCCCCCcc-----CCccccCCCCCCEEEcCCCcccccchh--
Q 010567 128 GSLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVE-- 195 (507)
Q Consensus 128 ~~~~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~~~~~~~~-- 195 (507)
...+.|+.|++++|.+.. ++..+..+++|++|++++|.++. ++..+...++|++|++++|.+++....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234556666666665541 33334455666666666666552 234455556677777777766542211
Q ss_pred ---h-hccccCeEECCCCCCCC
Q 010567 196 ---A-CQLRLSVLDLSNNSLSG 213 (507)
Q Consensus 196 ---~-~~~~L~~l~l~~~~~~~ 213 (507)
. ....|++|++++|.+++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 1 11237777777776655
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=7.6e-10 Score=103.98 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=64.3
Q ss_pred EEeCCCC-CCCCCchhhhcccCCCeEEcCC-CcCccCC-ccccCCCCCcEEEcCCCcccccchhhhcCccccceeecCCc
Q 010567 42 KFDCSSN-QLKELPSSLGRCLNLSDFKASN-NCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 118 (507)
Q Consensus 42 ~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~-~~~~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 118 (507)
.++++++ .++++|. +..+.+|++|+|++ |.++.++ ..|..+++|+.|+|++|+++.++..+|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3566665 6666666 66666677777764 6666655 34666777777777777776666666666667777777666
Q ss_pred ccccccccccCCCcccEEeccCCccc
Q 010567 119 LLNGMPETIGSLSRLIRLDLHQNRIL 144 (507)
Q Consensus 119 ~~~~~~~~~~~~~~L~~L~l~~~~i~ 144 (507)
.+..+|........|+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 66666543322223666666666554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=2.1e-09 Score=100.92 Aligned_cols=101 Identities=22% Similarity=0.220 Sum_probs=55.4
Q ss_pred eEEecCC-CCCCCChhhhcCCCccEEEcCC-CccCcCCc-cccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCC
Q 010567 285 ELSLEGM-NLSAIPSEIWEAGEITKLDLSR-NSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 361 (507)
Q Consensus 285 ~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~i~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 361 (507)
.++.++. .+..+|. +..+++|+.|++++ |.+..++. .|..+++|++|++++|.+.++++..|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455554 5555555 55555566666654 55555542 3555555666666655555555555555555555555555
Q ss_pred CCCCCCccccCCCCCceEEEccCccc
Q 010567 362 PLRQVPSDGFKDIPMLQILDLSYNIA 387 (507)
Q Consensus 362 ~i~~~~~~~~~~~~~L~~L~l~~~~~ 387 (507)
.++.++...+..++ |+.|++.+|.+
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCc
Confidence 55555554444443 55555555543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=2.3e-09 Score=100.05 Aligned_cols=176 Identities=17% Similarity=0.182 Sum_probs=108.0
Q ss_pred hhcCCCccEEEcCCCccC----------cCCccccCCCcCcEEecccCcccCCchHHhhcCCCCCEEEccCCCCCCCCcc
Q 010567 300 IWEAGEITKLDLSRNSIQ----------ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 369 (507)
Q Consensus 300 ~~~~~~L~~L~l~~~~~~----------~i~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 369 (507)
...+++|+.|.+...... ++...+..+|+|++|+++++.-...+. + ..++|+.|++..|.++.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHH
Confidence 334678888887654321 233345677888888888763122222 2 378888888888776543322
Q ss_pred cc--CCCCCceEEEccC--cccCCC-CC----CCC--CCCCcCcEEEcccccCcc-cccch---hccCCCcEEEcCCCcc
Q 010567 370 GF--KDIPMLQILDLSY--NIASLP-EN----PPF--SSLPHLQELYLRRMQLRE-APTDI---LRLQQLRILDLSQNSL 434 (507)
Q Consensus 370 ~~--~~~~~L~~L~l~~--~~~~~~-~~----~~~--~~~~~L~~L~l~~~~i~~-l~~~~---~~~~~L~~L~l~~~~l 434 (507)
.+ ..+|+|+.|+|+. +...+. .. ..+ ..+|+|+.|.+.+|.+.. .+..+ ..+++|++|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 23 3678888888753 211111 00 112 357899999998888762 22222 2478899999998887
Q ss_pred cc-----ccccccCCCCCCeEeCCCCCCCCC-CCcccCCCccCceEeccCCC
Q 010567 435 QS-----IPEGFKNLTSLTELDLSDNNISAL-PPELGLLEPSLQALRLDGNP 480 (507)
Q Consensus 435 ~~-----l~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~ 480 (507)
.. ++..+.++++|++|++++|.+++. -..+... -...+++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a--lg~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS--LPMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH--CCSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH--cCCEEEecCCc
Confidence 73 455667789999999998887631 1112211 12567787776
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.81 E-value=3.8e-09 Score=88.93 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=59.7
Q ss_pred HHhhcccCCCCEEEcCCC-ccc-----ccCccccCCCcccEEeCCCCCCC-----CCchhhhcccCCCeEEcCCCcCcc-
Q 010567 8 LYVFDRLHMLKSLDVSFN-SIM-----KIPDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITS- 75 (507)
Q Consensus 8 ~~~~~~~~~L~~L~l~~~-~i~-----~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~- 75 (507)
...+...+.|+.|++++| .+. .+...+..+++|++|++++|.++ .+...+...+.|++|++++|.++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345555666666666666 554 23444555566666666666655 233444555566666666665552
Q ss_pred ----CCccccCCCCCcEEEc--CCCcccccc----hhhhcCccccceeecCCccc
Q 010567 76 ----LPEDLADCSKMSKLDV--EGNKLTVLS----NNLIASWTMLTELIASKNLL 120 (507)
Q Consensus 76 ----l~~~~~~~~~L~~L~l--~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~ 120 (507)
+...+...++|++|++ ++|.+++.. ...+...+.|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3344555556666666 555555321 11233345555555555544
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=6.8e-09 Score=96.85 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=44.9
Q ss_pred cCCCcccEEeCCCCCC----------CCCchhhhcccCCCeEEcCCCcCccCCccccCCCCCcEEEcCCCcccccchhhh
Q 010567 35 GSATALVKFDCSSNQL----------KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 104 (507)
Q Consensus 35 ~~~~~L~~L~l~~~~l----------~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 104 (507)
..+++|+.|.+.+... ..++..+..+++|++|.++++.-..++. + .+++|++|++..+.+..-....+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 3456677776654321 1244455666777777777663223333 3 26777777777766653222223
Q ss_pred c--CccccceeecC
Q 010567 105 A--SWTMLTELIAS 116 (507)
Q Consensus 105 ~--~~~~L~~L~l~ 116 (507)
. .+++|++|+++
T Consensus 214 ~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 214 LGSDLPNLEKLVLY 227 (362)
T ss_dssp HHSBCTTCCEEEEE
T ss_pred HHccCCCCcEEEEe
Confidence 2 56777777764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=1.1e-08 Score=86.11 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=69.0
Q ss_pred cCccccCCCcccEEeCCCC-CCC-----CCchhhhcccCCCeEEcCCCcCc-----cCCccccCCCCCcEEEcCCCcccc
Q 010567 30 IPDEIGSATALVKFDCSSN-QLK-----ELPSSLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTV 98 (507)
Q Consensus 30 ~~~~~~~~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~~ 98 (507)
+...+..+++|++|++++| .+. .+...+...++|++|++++|.++ .+...+...++|++|++++|.+++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445566777777777777 665 23445666677777777777766 234455566777777777777664
Q ss_pred cc----hhhhcCccccceeec--CCccccc-----ccccccCCCcccEEeccCCcc
Q 010567 99 LS----NNLIASWTMLTELIA--SKNLLNG-----MPETIGSLSRLIRLDLHQNRI 143 (507)
Q Consensus 99 ~~----~~~~~~~~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~i 143 (507)
.. ..++...+.|++|++ ++|.+.. +.+.+...+.|++|++++|.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 22 223455566666666 5565542 333444455666666665554
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=1.8e-07 Score=76.42 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=17.1
Q ss_pred cCcEEecccCcccCCchHHhhcCCCCCEEEccCC
Q 010567 328 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 361 (507)
Q Consensus 328 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 361 (507)
.|++|++++|.+++.....+..+++|++|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555544444333444555555555554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=7.9e-07 Score=78.48 Aligned_cols=100 Identities=23% Similarity=0.265 Sum_probs=57.4
Q ss_pred CCCcccE--EeCCCCCCCCCch----hhhcccCCCeEEcCCCcCccCC---ccccCCCCCcEEEcCCCcccccchhhhcC
Q 010567 36 SATALVK--FDCSSNQLKELPS----SLGRCLNLSDFKASNNCITSLP---EDLADCSKMSKLDVEGNKLTVLSNNLIAS 106 (507)
Q Consensus 36 ~~~~L~~--L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~~~~l~---~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 106 (507)
..+.|+. ++++.|....++. ...++++|++|++++|.++.++ ..+..+++|+.|+|++|++.++.. +..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG--GGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh--hhh
Confidence 3344444 4455554333332 2245667777777777766542 445567777777777777776522 333
Q ss_pred cc--ccceeecCCccccc-cc-------ccccCCCcccEEe
Q 010567 107 WT--MLTELIASKNLLNG-MP-------ETIGSLSRLIRLD 137 (507)
Q Consensus 107 ~~--~L~~L~l~~~~~~~-~~-------~~~~~~~~L~~L~ 137 (507)
+. +|++|++.+|.+.. +| ..+..+++|+.||
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 33 77777777777642 22 2355667777775
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=2.2e-06 Score=69.95 Aligned_cols=81 Identities=11% Similarity=0.111 Sum_probs=40.8
Q ss_pred cCCCeEEcCCCcCccC-CccccCCCCCcEEEcCCCc-ccccchhhhcCc----cccceeecCCcc-ccccc-ccccCCCc
Q 010567 61 LNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNK-LTVLSNNLIASW----TMLTELIASKNL-LNGMP-ETIGSLSR 132 (507)
Q Consensus 61 ~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~-~~~~~~~~ 132 (507)
..|++||+++|.++.. -..+..|++|++|++++|. +++-.-..+..+ ++|++|++++|. +++-. ..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3566666666655521 1334556666666666653 554443334442 356666665553 33211 23344555
Q ss_pred ccEEeccCC
Q 010567 133 LIRLDLHQN 141 (507)
Q Consensus 133 L~~L~l~~~ 141 (507)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555555
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.03 E-value=8.9e-06 Score=67.71 Aligned_cols=106 Identities=20% Similarity=0.216 Sum_probs=45.0
Q ss_pred CCCcccEEeCCCC-CCC-----CCchhhhcccCCCeEEcCCCcCc-----cCCccccCCCCCcEEEcCCCcccccc----
Q 010567 36 SATALVKFDCSSN-QLK-----ELPSSLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS---- 100 (507)
Q Consensus 36 ~~~~L~~L~l~~~-~l~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~l~~~~---- 100 (507)
..+.|+.|+++++ .+. .+.+++.....|++|+|++|.++ .|.+.+...+.|++|+|++|.+.+-.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3444445555442 333 22334444444555555555444 22233344444555555555444211
Q ss_pred hhhhcCccccceeecCCc---ccc-----cccccccCCCcccEEeccCC
Q 010567 101 NNLIASWTMLTELIASKN---LLN-----GMPETIGSLSRLIRLDLHQN 141 (507)
Q Consensus 101 ~~~~~~~~~L~~L~l~~~---~~~-----~~~~~~~~~~~L~~L~l~~~ 141 (507)
..++...+.|++|+++++ .+. .+.+.+...+.|+.|+++.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 112333444555555432 221 12233444455555555544
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=8.8e-06 Score=71.80 Aligned_cols=60 Identities=30% Similarity=0.427 Sum_probs=31.6
Q ss_pred CCcCcEEEcccccCccc---ccchhccCCCcEEEcCCCccccccccccCCC--CCCeEeCCCCCCC
Q 010567 398 LPHLQELYLRRMQLREA---PTDILRLQQLRILDLSQNSLQSIPEGFKNLT--SLTELDLSDNNIS 458 (507)
Q Consensus 398 ~~~L~~L~l~~~~i~~l---~~~~~~~~~L~~L~l~~~~l~~l~~~~~~l~--~L~~L~l~~~~l~ 458 (507)
+++|+.|+|++|+|..+ +..+..+++|+.|++++|.++++. .+..++ +|++|++++|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 45555555555555533 233445566666666666665541 222222 6666666666654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.77 E-value=1.2e-05 Score=66.84 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=68.6
Q ss_pred HhhcccCCCCEEEcCCC-ccc-----ccCccccCCCcccEEeCCCCCCC-----CCchhhhcccCCCeEEcCCCcCc---
Q 010567 9 YVFDRLHMLKSLDVSFN-SIM-----KIPDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCIT--- 74 (507)
Q Consensus 9 ~~~~~~~~L~~L~l~~~-~i~-----~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~--- 74 (507)
..+.+-+.|+.|+++++ .|. .+.+++.....|+.|++++|+++ .+.+.+.....|++|+|++|.++
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34455667777777764 554 34555666677777777777766 44556666677777777777766
Q ss_pred --cCCccccCCCCCcEEEcCCC---ccccc----chhhhcCccccceeecCCccc
Q 010567 75 --SLPEDLADCSKMSKLDVEGN---KLTVL----SNNLIASWTMLTELIASKNLL 120 (507)
Q Consensus 75 --~l~~~~~~~~~L~~L~l~~~---~l~~~----~~~~~~~~~~L~~L~l~~~~~ 120 (507)
.+.+.+...+.|++|+++++ .+.+- ...++...+.|+.|+++.+.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34445666666777777654 22321 122355566777777765543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.08 E-value=0.0012 Score=51.30 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=36.5
Q ss_pred EEEcccccCc--ccccchhccCCCcEEEcCCCccccccc-cccCCCCCCeEeCCCCCCC
Q 010567 403 ELYLRRMQLR--EAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNIS 458 (507)
Q Consensus 403 ~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~ 458 (507)
.++.++.+++ .+|..+. ++|++|+|++|.|+++|. .|..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6677777776 6665432 357777777777777754 3567777777777777653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.49 E-value=0.0045 Score=47.92 Aligned_cols=54 Identities=20% Similarity=0.394 Sum_probs=31.3
Q ss_pred EEeCCCCCCC--CCchhhhcccCCCeEEcCCCcCccCCc-cccCCCCCcEEEcCCCccc
Q 010567 42 KFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLT 97 (507)
Q Consensus 42 ~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~l~ 97 (507)
.+++++++++ ++|..+. .+|++|+|++|.++.++. .|..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 6665433 256666666666666643 3455566666666655443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.49 E-value=0.66 Score=33.54 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=23.2
Q ss_pred ccCCchHHhhcCCCCCEEEccCCCCCCCCccccCCCCCceEEEccC
Q 010567 339 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 384 (507)
Q Consensus 339 l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~ 384 (507)
++.+....|..|.+|+++.+..+ ++.+...+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444444555555555555542 4455555555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=88.36 E-value=0.73 Score=33.30 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=40.3
Q ss_pred CCCCCCCCccccCCCCCceEEEccCcccCCCCCCCCCCCCcCcEEEcccc
Q 010567 360 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 409 (507)
Q Consensus 360 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 409 (507)
+..++.+...+|.+|++|+.+.+..+ ++.....+|.+|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34677888888999999999999864 66677788999999999998775
Done!