Query 010571
Match_columns 507
No_of_seqs 300 out of 2728
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 6.6E-45 1.4E-49 369.6 39.6 313 4-332 138-469 (470)
2 PLN02153 epithiospecifier prot 100.0 1.4E-43 3.1E-48 347.5 37.4 307 10-331 4-339 (341)
3 KOG4693 Uncharacterized conser 100.0 4.6E-44 1E-48 311.1 23.4 293 14-318 3-312 (392)
4 KOG4441 Proteins containing BT 100.0 6.6E-40 1.4E-44 336.5 29.0 272 35-341 282-556 (571)
5 KOG0379 Kelch repeat-containin 100.0 1.7E-39 3.6E-44 328.7 31.5 297 20-330 53-356 (482)
6 KOG4441 Proteins containing BT 100.0 2.2E-39 4.8E-44 332.6 29.6 252 5-286 303-555 (571)
7 PHA02713 hypothetical protein; 100.0 4.7E-39 1E-43 332.0 28.5 252 4-288 273-544 (557)
8 PLN02193 nitrile-specifier pro 100.0 5.8E-38 1.3E-42 318.8 35.4 292 29-342 112-421 (470)
9 PLN02153 epithiospecifier prot 100.0 1E-37 2.3E-42 306.1 31.6 263 3-277 50-339 (341)
10 KOG4693 Uncharacterized conser 100.0 1.3E-38 2.7E-43 277.3 20.8 247 4-264 45-313 (392)
11 PHA02713 hypothetical protein; 100.0 9.5E-37 2.1E-41 314.9 30.9 264 39-340 259-542 (557)
12 PHA03098 kelch-like protein; P 100.0 1.5E-35 3.2E-40 308.9 29.3 252 7-289 268-523 (534)
13 TIGR03547 muta_rot_YjhT mutatr 100.0 1E-34 2.2E-39 286.0 31.1 272 23-330 3-345 (346)
14 KOG1230 Protein containing rep 100.0 2.5E-35 5.4E-40 271.5 20.8 247 23-284 62-347 (521)
15 TIGR03548 mutarot_permut cycli 100.0 5.3E-34 1.1E-38 277.9 30.4 263 26-318 2-313 (323)
16 KOG4152 Host cell transcriptio 100.0 5.4E-35 1.2E-39 275.4 21.2 301 12-331 16-363 (830)
17 KOG0379 Kelch repeat-containin 100.0 1.5E-34 3.3E-39 292.6 25.9 252 85-342 55-312 (482)
18 PRK14131 N-acetylneuraminic ac 100.0 6.1E-34 1.3E-38 282.4 29.3 284 14-336 18-373 (376)
19 PHA03098 kelch-like protein; P 100.0 5.5E-34 1.2E-38 297.1 29.5 267 38-342 251-522 (534)
20 TIGR03548 mutarot_permut cycli 100.0 2.1E-33 4.5E-38 273.7 26.7 234 3-264 39-314 (323)
21 TIGR03547 muta_rot_YjhT mutatr 100.0 1.9E-32 4.1E-37 269.9 28.0 245 3-275 29-344 (346)
22 PRK14131 N-acetylneuraminic ac 100.0 1.8E-32 3.9E-37 271.8 28.0 253 3-283 50-374 (376)
23 PHA02790 Kelch-like protein; P 100.0 6.6E-32 1.4E-36 275.2 29.2 211 33-284 267-477 (480)
24 KOG1230 Protein containing rep 100.0 1.3E-32 2.7E-37 253.7 21.1 217 3-234 98-347 (521)
25 PHA02790 Kelch-like protein; P 100.0 1.6E-29 3.5E-34 257.7 24.3 191 3-234 287-477 (480)
26 KOG4152 Host cell transcriptio 100.0 1.8E-29 3.9E-34 238.2 18.7 262 3-276 57-362 (830)
27 COG3055 Uncharacterized protei 99.8 1.2E-18 2.7E-23 159.7 20.8 247 3-277 58-374 (381)
28 COG3055 Uncharacterized protei 99.8 1.8E-16 3.8E-21 145.6 22.2 273 23-332 32-375 (381)
29 KOG2437 Muskelin [Signal trans 99.7 9.5E-18 2.1E-22 159.1 6.2 261 12-286 238-543 (723)
30 KOG2437 Muskelin [Signal trans 99.6 1.4E-15 3E-20 144.6 7.1 273 61-340 237-543 (723)
31 PF13964 Kelch_6: Kelch motif 99.2 4.7E-11 1E-15 81.2 6.4 50 90-142 1-50 (50)
32 PLN02772 guanylate kinase 99.2 1.9E-10 4.2E-15 110.6 12.0 92 136-229 19-110 (398)
33 PF13964 Kelch_6: Kelch motif 99.1 2.3E-10 5.1E-15 77.7 6.1 46 27-72 1-47 (50)
34 PLN02772 guanylate kinase 99.0 2.3E-09 5E-14 103.3 11.4 90 187-279 19-110 (398)
35 PF03089 RAG2: Recombination a 99.0 3E-08 6.6E-13 88.9 16.9 162 153-319 40-230 (337)
36 PF13415 Kelch_3: Galactose ox 99.0 1.6E-09 3.4E-14 73.1 5.9 48 151-201 1-49 (49)
37 PF13415 Kelch_3: Galactose ox 98.9 1.9E-09 4.2E-14 72.7 5.9 47 203-252 1-49 (49)
38 PF01344 Kelch_1: Kelch motif; 98.9 1.7E-09 3.7E-14 72.5 5.4 47 90-139 1-47 (47)
39 PF01344 Kelch_1: Kelch motif; 98.9 1.5E-09 3.2E-14 72.8 4.9 46 27-72 1-47 (47)
40 PF07646 Kelch_2: Kelch motif; 98.9 3.3E-09 7.1E-14 71.6 5.8 45 27-71 1-48 (49)
41 PF03089 RAG2: Recombination a 98.9 8.9E-07 1.9E-11 79.6 21.2 139 85-225 16-188 (337)
42 PF07646 Kelch_2: Kelch motif; 98.8 9.5E-09 2.1E-13 69.3 6.3 44 90-133 1-46 (49)
43 PF13418 Kelch_4: Galactose ox 98.8 4.8E-09 1E-13 70.9 4.1 47 90-139 1-48 (49)
44 PF13418 Kelch_4: Galactose ox 98.8 5.3E-09 1.2E-13 70.7 4.0 45 27-71 1-47 (49)
45 PF13854 Kelch_5: Kelch motif 98.7 2.1E-08 4.6E-13 64.9 5.4 40 24-63 1-42 (42)
46 PF07250 Glyoxal_oxid_N: Glyox 98.7 1.8E-06 4E-11 78.6 19.1 180 117-316 46-243 (243)
47 PF13854 Kelch_5: Kelch motif 98.7 6.2E-08 1.3E-12 62.7 5.4 41 87-127 1-42 (42)
48 PF07250 Glyoxal_oxid_N: Glyox 98.5 6.3E-06 1.4E-10 75.2 17.0 147 54-234 47-205 (243)
49 smart00612 Kelch Kelch domain. 98.4 3.7E-07 7.9E-12 61.0 4.8 47 102-152 1-47 (47)
50 smart00612 Kelch Kelch domain. 98.4 5.4E-07 1.2E-11 60.1 4.9 47 205-254 1-47 (47)
51 TIGR01640 F_box_assoc_1 F-box 98.2 0.0012 2.7E-08 60.9 23.5 199 118-332 15-229 (230)
52 TIGR01640 F_box_assoc_1 F-box 98.1 0.0011 2.4E-08 61.2 22.6 199 3-229 14-230 (230)
53 PRK11138 outer membrane biogen 97.8 0.048 1E-06 54.8 28.2 240 32-337 64-320 (394)
54 PRK11138 outer membrane biogen 97.7 0.071 1.5E-06 53.6 29.8 217 4-283 80-320 (394)
55 PF13360 PQQ_2: PQQ-like domai 97.4 0.11 2.3E-06 48.0 29.8 207 5-280 5-233 (238)
56 TIGR03300 assembly_YfgL outer 97.1 0.35 7.5E-06 48.3 29.5 213 4-283 76-305 (377)
57 cd00216 PQQ_DH Dehydrogenases 96.9 0.66 1.4E-05 48.0 25.9 131 29-184 53-193 (488)
58 TIGR03866 PQQ_ABC_repeats PQQ- 96.9 0.41 8.8E-06 45.5 27.5 187 39-281 2-191 (300)
59 PF07893 DUF1668: Protein of u 96.9 0.29 6.3E-06 48.0 21.3 132 99-251 75-228 (342)
60 PF07893 DUF1668: Protein of u 96.8 0.041 9E-07 53.9 15.0 118 36-184 75-215 (342)
61 TIGR03300 assembly_YfgL outer 96.7 0.71 1.5E-05 46.0 30.6 230 31-337 59-305 (377)
62 PF13360 PQQ_2: PQQ-like domai 96.7 0.53 1.1E-05 43.3 29.5 208 54-333 4-232 (238)
63 KOG0310 Conserved WD40 repeat- 96.6 0.36 7.9E-06 47.5 19.2 215 37-319 79-301 (487)
64 PF12768 Rax2: Cortical protei 96.6 0.14 3.1E-06 48.2 16.2 124 105-236 2-130 (281)
65 PF09726 Macoilin: Transmembra 96.6 0.014 3E-07 62.0 10.5 99 391-492 420-518 (697)
66 PF12718 Tropomyosin_1: Tropom 96.5 0.054 1.2E-06 45.4 11.1 19 411-429 36-54 (143)
67 PF08450 SGL: SMP-30/Gluconola 96.3 0.89 1.9E-05 42.2 20.1 189 4-234 23-220 (246)
68 PF09726 Macoilin: Transmembra 96.3 0.028 6E-07 59.8 10.3 17 55-71 129-145 (697)
69 PF12768 Rax2: Cortical protei 96.2 0.13 2.9E-06 48.4 13.6 123 156-286 2-130 (281)
70 KOG0646 WD40 repeat protein [G 96.2 0.46 1E-05 46.5 17.0 153 28-216 82-241 (476)
71 PF12718 Tropomyosin_1: Tropom 96.1 0.078 1.7E-06 44.5 10.3 28 433-460 37-64 (143)
72 PF07888 CALCOCO1: Calcium bin 96.0 0.094 2E-06 53.3 12.2 29 433-461 208-236 (546)
73 TIGR02800 propeller_TolB tol-p 96.0 2 4.3E-05 43.4 25.5 184 53-279 214-399 (417)
74 PRK05137 tolB translocation pr 95.7 2.8 6E-05 42.8 25.8 192 53-285 226-420 (435)
75 PF04156 IncA: IncA protein; 95.7 0.2 4.3E-06 44.7 12.0 44 415-458 107-150 (191)
76 PF05096 Glu_cyclase_2: Glutam 95.7 1.7 3.8E-05 40.2 20.2 202 94-330 48-260 (264)
77 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 3.5 7.6E-05 43.1 24.4 130 31-184 63-199 (527)
78 PF10473 CENP-F_leu_zip: Leuci 95.6 0.4 8.7E-06 39.7 12.1 78 388-465 23-100 (140)
79 smart00787 Spc7 Spc7 kinetocho 95.5 0.19 4.2E-06 48.1 11.6 17 470-486 240-256 (312)
80 KOG0804 Cytoplasmic Zn-finger 95.5 0.14 3E-06 49.9 10.4 16 269-284 267-283 (493)
81 KOG2055 WD40 repeat protein [G 95.5 0.57 1.2E-05 45.9 14.4 154 37-230 224-377 (514)
82 PF08317 Spc7: Spc7 kinetochor 95.4 0.26 5.7E-06 47.9 12.5 12 473-484 248-259 (325)
83 COG2433 Uncharacterized conser 95.3 0.15 3.2E-06 51.8 10.5 79 411-489 423-508 (652)
84 PF08317 Spc7: Spc7 kinetochor 95.3 0.2 4.3E-06 48.7 11.3 17 467-483 249-265 (325)
85 PF04111 APG6: Autophagy prote 95.3 0.12 2.5E-06 49.8 9.4 43 413-455 46-88 (314)
86 PRK04922 tolB translocation pr 95.3 4 8.6E-05 41.6 25.7 188 53-284 228-418 (433)
87 PRK04792 tolB translocation pr 95.2 4.2 9.1E-05 41.6 25.8 187 53-283 242-430 (448)
88 KOG0804 Cytoplasmic Zn-finger 95.2 0.3 6.4E-06 47.7 11.7 19 429-447 373-391 (493)
89 PRK10361 DNA recombination pro 95.2 0.31 6.7E-06 49.0 12.3 36 466-501 169-206 (475)
90 TIGR02800 propeller_TolB tol-p 95.1 4.4 9.5E-05 40.9 26.2 147 117-285 214-362 (417)
91 PRK05137 tolB translocation pr 95.0 4.7 0.0001 41.1 26.7 189 117-334 226-415 (435)
92 TIGR03866 PQQ_ABC_repeats PQQ- 95.0 3.2 6.9E-05 39.2 29.8 263 2-333 10-281 (300)
93 PF07888 CALCOCO1: Calcium bin 95.0 0.36 7.9E-06 49.2 12.1 39 391-429 145-183 (546)
94 KOG2055 WD40 repeat protein [G 94.9 1.7 3.6E-05 42.8 15.8 151 100-280 224-377 (514)
95 COG4026 Uncharacterized protei 94.9 0.14 3E-06 44.8 7.9 71 407-477 132-206 (290)
96 PF11559 ADIP: Afadin- and alp 94.9 0.68 1.5E-05 39.4 12.2 89 401-489 57-146 (151)
97 smart00787 Spc7 Spc7 kinetocho 94.9 0.5 1.1E-05 45.3 12.4 17 467-483 244-260 (312)
98 PF08450 SGL: SMP-30/Gluconola 94.9 3.2 6.9E-05 38.5 23.6 200 37-285 11-221 (246)
99 PF13851 GAS: Growth-arrest sp 94.9 0.67 1.4E-05 41.4 12.4 21 467-487 105-125 (201)
100 PRK04792 tolB translocation pr 94.8 5.5 0.00012 40.8 26.3 149 116-285 241-390 (448)
101 PF02897 Peptidase_S9_N: Proly 94.8 4.3 9.4E-05 41.0 19.9 251 37-335 134-408 (414)
102 PF05096 Glu_cyclase_2: Glutam 94.7 2.6 5.7E-05 39.1 16.1 154 36-233 54-209 (264)
103 PF10473 CENP-F_leu_zip: Leuci 94.7 0.69 1.5E-05 38.3 11.2 58 407-464 14-71 (140)
104 PRK00178 tolB translocation pr 94.7 5.7 0.00012 40.4 26.7 148 117-286 223-372 (430)
105 PRK09039 hypothetical protein; 94.6 0.44 9.5E-06 46.6 11.6 22 444-465 136-157 (343)
106 PF04156 IncA: IncA protein; 94.6 0.36 7.7E-06 43.0 10.2 55 411-465 96-150 (191)
107 PF13851 GAS: Growth-arrest sp 94.6 0.76 1.6E-05 41.1 12.2 48 389-436 34-81 (201)
108 KOG0995 Centromere-associated 94.4 0.29 6.3E-06 49.4 9.8 36 412-447 289-324 (581)
109 COG2433 Uncharacterized conser 94.4 0.5 1.1E-05 48.1 11.4 77 399-475 425-508 (652)
110 COG4257 Vgb Streptogramin lyas 94.4 3.9 8.4E-05 37.8 15.9 178 8-234 129-312 (353)
111 PF04111 APG6: Autophagy prote 94.3 0.44 9.5E-06 45.9 10.6 21 466-486 110-130 (314)
112 COG4372 Uncharacterized protei 94.3 0.64 1.4E-05 44.4 11.1 45 404-448 110-154 (499)
113 PRK04043 tolB translocation pr 94.2 7 0.00015 39.6 24.0 193 53-286 213-409 (419)
114 PRK11028 6-phosphogluconolacto 94.2 5.9 0.00013 38.6 24.9 238 39-331 3-258 (330)
115 PRK04922 tolB translocation pr 94.1 7.8 0.00017 39.5 25.7 148 116-285 227-376 (433)
116 PRK10884 SH3 domain-containing 94.1 0.35 7.6E-06 43.2 8.7 9 413-421 103-111 (206)
117 PF02191 OLF: Olfactomedin-lik 94.1 4.2 9.1E-05 37.8 16.2 162 100-283 30-209 (250)
118 KOG4403 Cell surface glycoprot 93.9 0.3 6.4E-06 47.2 8.2 20 470-489 348-367 (575)
119 cd00216 PQQ_DH Dehydrogenases 93.8 9.3 0.0002 39.6 31.1 110 4-133 72-193 (488)
120 KOG0250 DNA repair protein RAD 93.8 0.54 1.2E-05 51.2 11.0 48 391-438 677-724 (1074)
121 PF08614 ATG16: Autophagy prot 93.8 0.37 8.1E-06 42.9 8.5 55 411-465 96-150 (194)
122 cd00094 HX Hemopexin-like repe 93.8 4.6 0.0001 35.9 17.4 155 33-230 12-178 (194)
123 PF10186 Atg14: UV radiation r 93.8 0.99 2.1E-05 43.4 12.2 52 411-462 57-108 (302)
124 KOG0250 DNA repair protein RAD 93.8 0.55 1.2E-05 51.2 10.9 64 420-483 347-415 (1074)
125 COG4257 Vgb Streptogramin lyas 93.7 5.8 0.00013 36.7 19.0 220 7-286 87-314 (353)
126 PF14870 PSII_BNR: Photosynthe 93.7 6.8 0.00015 37.5 22.9 218 12-287 46-271 (302)
127 PF08581 Tup_N: Tup N-terminal 93.6 1 2.3E-05 33.2 9.0 69 405-479 6-74 (79)
128 COG4942 Membrane-bound metallo 93.5 1.3 2.8E-05 43.7 12.1 50 394-443 43-92 (420)
129 PF10234 Cluap1: Clusterin-ass 93.5 0.87 1.9E-05 42.2 10.5 50 416-465 168-217 (267)
130 PRK13684 Ycf48-like protein; P 93.4 8.4 0.00018 37.6 24.1 217 12-286 75-297 (334)
131 TIGR03752 conj_TIGR03752 integ 93.4 0.34 7.3E-06 48.2 8.0 20 466-485 120-139 (472)
132 COG4026 Uncharacterized protei 93.4 0.46 9.9E-06 41.7 7.8 68 395-462 134-201 (290)
133 PRK09039 hypothetical protein; 93.3 0.99 2.1E-05 44.1 11.1 46 416-461 122-167 (343)
134 PF10282 Lactonase: Lactonase, 93.3 9 0.00019 37.6 24.6 278 5-336 17-329 (345)
135 KOG2321 WD40 repeat protein [G 93.2 3.9 8.3E-05 41.6 14.9 123 190-332 131-259 (703)
136 PRK00178 tolB translocation pr 93.0 12 0.00025 38.1 25.8 183 53-279 223-408 (430)
137 PF06637 PV-1: PV-1 protein (P 92.9 1.8 3.9E-05 41.4 11.6 20 466-485 360-379 (442)
138 PF08268 FBA_3: F-box associat 92.8 3.6 7.7E-05 33.8 12.4 86 98-185 3-89 (129)
139 PF08268 FBA_3: F-box associat 92.7 4.7 0.0001 33.1 13.0 82 203-285 5-88 (129)
140 KOG1029 Endocytic adaptor prot 92.7 1.5 3.3E-05 45.9 11.6 25 391-415 326-350 (1118)
141 PF06818 Fez1: Fez1; InterPro 92.7 2 4.3E-05 37.9 10.9 72 393-464 35-106 (202)
142 PRK02889 tolB translocation pr 92.6 13 0.00028 37.8 26.0 182 53-278 220-404 (427)
143 PF11932 DUF3450: Protein of u 92.6 2.2 4.8E-05 39.8 12.1 37 429-465 61-97 (251)
144 PTZ00420 coronin; Provisional 92.6 15 0.00033 38.6 20.7 107 153-278 139-249 (568)
145 PRK03629 tolB translocation pr 92.6 13 0.00029 37.7 26.9 149 117-286 223-372 (429)
146 PF02897 Peptidase_S9_N: Proly 92.5 10 0.00022 38.3 17.8 148 116-284 251-411 (414)
147 PF14583 Pectate_lyase22: Olig 92.4 10 0.00022 37.3 16.5 218 37-287 46-282 (386)
148 KOG2077 JNK/SAPK-associated pr 92.4 1.3 2.8E-05 44.6 10.4 16 488-503 434-449 (832)
149 PF12217 End_beta_propel: Cata 92.4 8.7 0.00019 35.2 17.6 184 10-213 112-334 (367)
150 PF10282 Lactonase: Lactonase, 92.4 12 0.00026 36.7 24.5 234 55-330 17-274 (345)
151 PF10481 CENP-F_N: Cenp-F N-te 92.3 2.3 4.9E-05 38.9 10.9 59 428-486 57-126 (307)
152 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.2 4.6 0.0001 33.4 12.2 22 433-454 61-82 (132)
153 cd00200 WD40 WD40 domain, foun 92.2 9.3 0.0002 35.0 26.7 145 101-279 105-251 (289)
154 PF11180 DUF2968: Protein of u 92.2 3.8 8.3E-05 35.6 11.7 83 411-500 106-189 (192)
155 KOG1853 LIS1-interacting prote 92.1 3.2 6.9E-05 37.4 11.4 22 466-487 137-158 (333)
156 KOG1853 LIS1-interacting prote 92.0 2.3 5E-05 38.2 10.5 13 472-484 160-172 (333)
157 PF00769 ERM: Ezrin/radixin/mo 92.0 1.8 3.9E-05 40.1 10.5 11 469-479 103-113 (246)
158 PF12325 TMF_TATA_bd: TATA ele 92.0 1.8 3.9E-05 35.0 9.1 72 412-483 32-110 (120)
159 cd00094 HX Hemopexin-like repe 91.9 8.7 0.00019 34.2 17.1 155 146-334 11-178 (194)
160 KOG0971 Microtubule-associated 91.9 2 4.3E-05 45.9 11.5 35 464-498 327-361 (1243)
161 COG1322 Predicted nuclease of 91.8 2.3 5.1E-05 42.8 11.7 57 445-501 139-197 (448)
162 PF09304 Cortex-I_coil: Cortex 91.8 5.1 0.00011 31.2 11.2 31 433-463 46-76 (107)
163 PF02239 Cytochrom_D1: Cytochr 91.7 15 0.00033 36.4 21.2 275 3-333 16-304 (369)
164 COG4942 Membrane-bound metallo 91.7 3.1 6.7E-05 41.1 12.0 43 387-429 148-190 (420)
165 PF00261 Tropomyosin: Tropomyo 91.6 3.9 8.4E-05 37.7 12.3 77 411-487 128-215 (237)
166 TIGR03752 conj_TIGR03752 integ 91.5 1.3 2.8E-05 44.3 9.4 12 470-481 117-128 (472)
167 KOG0996 Structural maintenance 91.5 1.7 3.7E-05 47.8 10.9 24 466-489 444-467 (1293)
168 PF09755 DUF2046: Uncharacteri 91.5 3.6 7.8E-05 38.8 11.8 11 391-401 86-96 (310)
169 PF10498 IFT57: Intra-flagella 91.4 3 6.4E-05 40.9 11.8 44 388-431 219-262 (359)
170 COG4946 Uncharacterized protei 91.4 14 0.00029 37.0 15.9 189 116-341 106-305 (668)
171 PF08614 ATG16: Autophagy prot 91.4 0.84 1.8E-05 40.7 7.5 62 391-452 83-144 (194)
172 PF06637 PV-1: PV-1 protein (P 91.4 1.6 3.5E-05 41.7 9.4 35 411-445 286-320 (442)
173 PRK13684 Ycf48-like protein; P 91.4 15 0.00033 35.9 19.0 198 12-261 118-321 (334)
174 KOG0995 Centromere-associated 91.4 1.4 3.1E-05 44.7 9.5 31 428-458 291-321 (581)
175 PF04849 HAP1_N: HAP1 N-termin 91.3 3.8 8.3E-05 38.7 11.8 37 428-464 217-253 (306)
176 PF05911 DUF869: Plant protein 91.3 2 4.3E-05 46.4 11.2 22 467-488 671-692 (769)
177 TIGR01069 mutS2 MutS2 family p 91.2 2.1 4.5E-05 46.8 11.5 9 496-504 626-634 (771)
178 KOG0249 LAR-interacting protei 91.1 0.75 1.6E-05 47.6 7.4 79 411-490 106-184 (916)
179 PRK00409 recombination and DNA 91.0 2.1 4.6E-05 46.9 11.5 7 497-503 639-645 (782)
180 PF14870 PSII_BNR: Photosynthe 91.0 15 0.00033 35.2 25.5 244 11-318 4-253 (302)
181 PF09910 DUF2139: Uncharacteri 90.9 14 0.0003 34.7 15.0 132 25-180 30-185 (339)
182 KOG0971 Microtubule-associated 90.9 1.6 3.4E-05 46.6 9.6 40 421-460 400-439 (1243)
183 PF12325 TMF_TATA_bd: TATA ele 90.9 6.7 0.00015 31.7 11.3 39 391-429 25-63 (120)
184 TIGR02168 SMC_prok_B chromosom 90.8 2.3 5E-05 49.5 12.5 6 40-45 25-30 (1179)
185 PF00038 Filament: Intermediat 90.8 4.5 9.8E-05 39.1 12.6 66 419-484 211-284 (312)
186 PF00261 Tropomyosin: Tropomyo 90.8 2 4.3E-05 39.7 9.6 21 410-430 36-56 (237)
187 PRK03629 tolB translocation pr 90.8 21 0.00045 36.4 26.2 190 53-285 223-414 (429)
188 PF12128 DUF3584: Protein of u 90.8 2 4.4E-05 49.7 11.6 42 393-434 604-645 (1201)
189 PTZ00266 NIMA-related protein 90.8 2.6 5.7E-05 47.0 11.9 6 101-106 87-92 (1021)
190 PF15066 CAGE1: Cancer-associa 90.8 2.4 5.3E-05 41.7 10.2 29 411-439 384-412 (527)
191 TIGR03007 pepcterm_ChnLen poly 90.7 1.8 3.9E-05 45.0 10.3 49 431-479 317-365 (498)
192 cd00200 WD40 WD40 domain, foun 90.7 13 0.00029 34.0 25.6 186 100-332 62-250 (289)
193 PF11932 DUF3450: Protein of u 90.5 3.9 8.4E-05 38.1 11.4 58 408-465 47-104 (251)
194 KOG0649 WD40 repeat protein [G 90.4 14 0.0003 33.7 16.7 71 96-183 122-193 (325)
195 PF00038 Filament: Intermediat 90.4 4.8 0.0001 38.9 12.4 6 480-485 294-299 (312)
196 KOG0161 Myosin class II heavy 90.4 2.8 6.2E-05 49.6 12.1 21 466-486 1122-1142(1930)
197 PF10168 Nup88: Nuclear pore c 90.4 2.4 5.2E-05 45.7 10.9 12 34-45 38-49 (717)
198 COG1520 FOG: WD40-like repeat 90.4 20 0.00044 35.5 20.3 153 34-233 65-225 (370)
199 KOG2264 Exostosin EXT1L [Signa 90.3 1.1 2.4E-05 45.1 7.6 7 470-476 136-142 (907)
200 COG1196 Smc Chromosome segrega 90.1 2.9 6.3E-05 48.3 12.1 6 253-258 101-106 (1163)
201 PTZ00421 coronin; Provisional 90.1 26 0.00056 36.3 29.8 156 101-283 138-296 (493)
202 TIGR01843 type_I_hlyD type I s 90.1 4 8.6E-05 41.3 12.1 9 474-482 251-259 (423)
203 KOG0996 Structural maintenance 90.0 2.8 6E-05 46.3 10.9 7 205-211 128-134 (1293)
204 TIGR01005 eps_transp_fam exopo 90.0 1.5 3.3E-05 48.2 9.5 43 437-479 344-386 (754)
205 COG3883 Uncharacterized protei 89.8 2.6 5.6E-05 38.9 9.1 55 411-465 46-100 (265)
206 PRK04043 tolB translocation pr 89.8 24 0.00053 35.7 23.3 183 118-333 214-402 (419)
207 TIGR03185 DNA_S_dndD DNA sulfu 89.8 2.1 4.5E-05 46.1 10.1 43 417-459 209-251 (650)
208 TIGR03185 DNA_S_dndD DNA sulfu 89.6 3.2 6.9E-05 44.7 11.3 8 103-110 30-37 (650)
209 PF15619 Lebercilin: Ciliary p 89.6 8.2 0.00018 34.2 11.9 50 413-462 57-106 (194)
210 PF09789 DUF2353: Uncharacteri 89.5 7.1 0.00015 37.3 12.0 27 461-487 132-158 (319)
211 PRK11028 6-phosphogluconolacto 89.4 22 0.00047 34.5 28.1 189 2-233 11-213 (330)
212 PF09304 Cortex-I_coil: Cortex 89.4 8 0.00017 30.1 10.0 21 412-432 18-38 (107)
213 PRK04863 mukB cell division pr 89.3 3.6 7.8E-05 48.2 11.9 11 356-366 258-268 (1486)
214 PF15070 GOLGA2L5: Putative go 89.3 5.3 0.00012 42.2 12.2 52 389-440 15-66 (617)
215 PF10186 Atg14: UV radiation r 89.2 6.2 0.00014 37.8 12.2 31 412-442 72-102 (302)
216 PRK15422 septal ring assembly 89.2 3.7 8.1E-05 29.8 7.6 21 418-438 12-32 (79)
217 TIGR02977 phageshock_pspA phag 89.2 6.2 0.00014 35.9 11.3 47 386-432 28-74 (219)
218 PRK10698 phage shock protein P 89.0 6.4 0.00014 35.8 11.2 48 385-432 27-74 (222)
219 PF09755 DUF2046: Uncharacteri 89.0 8.9 0.00019 36.2 12.1 35 445-479 113-152 (310)
220 PF15619 Lebercilin: Ciliary p 88.9 11 0.00024 33.4 12.2 19 467-485 169-187 (194)
221 PF09730 BicD: Microtubule-ass 88.9 4.5 9.8E-05 43.2 11.3 59 386-444 31-89 (717)
222 KOG0310 Conserved WD40 repeat- 88.8 28 0.0006 34.9 17.4 179 36-265 121-302 (487)
223 KOG0163 Myosin class VI heavy 88.7 3.1 6.8E-05 43.6 9.7 11 99-109 214-224 (1259)
224 PF15035 Rootletin: Ciliary ro 88.7 3.2 6.9E-05 36.4 8.6 55 432-486 61-119 (182)
225 PLN00181 protein SPA1-RELATED; 88.7 44 0.00095 37.1 23.6 61 100-178 587-650 (793)
226 KOG0980 Actin-binding protein 88.6 6.8 0.00015 42.0 12.2 9 179-187 176-184 (980)
227 KOG0982 Centrosomal protein Nu 88.5 6.7 0.00015 38.3 11.1 28 410-437 297-324 (502)
228 PF10211 Ax_dynein_light: Axon 88.5 10 0.00022 33.6 11.8 18 469-486 170-187 (189)
229 PF08826 DMPK_coil: DMPK coile 88.5 3.4 7.4E-05 28.8 6.8 11 476-486 46-56 (61)
230 PF08826 DMPK_coil: DMPK coile 88.4 4.4 9.5E-05 28.2 7.3 30 431-460 18-47 (61)
231 PRK11546 zraP zinc resistance 88.3 3 6.6E-05 34.6 7.7 7 470-476 97-103 (143)
232 KOG2048 WD40 repeat protein [G 88.3 35 0.00077 35.6 22.2 119 201-338 391-512 (691)
233 PF14662 CCDC155: Coiled-coil 88.2 13 0.00027 32.5 11.6 10 467-476 100-109 (193)
234 COG1842 PspA Phage shock prote 88.2 11 0.00024 34.3 11.9 47 385-431 27-73 (225)
235 KOG0288 WD40 repeat protein Ti 88.1 8 0.00017 37.7 11.4 26 410-435 41-66 (459)
236 PF15070 GOLGA2L5: Putative go 88.1 2.9 6.2E-05 44.2 9.3 19 411-429 44-62 (617)
237 PF05384 DegS: Sensor protein 88.0 16 0.00034 31.2 12.4 10 480-489 144-153 (159)
238 KOG2129 Uncharacterized conser 88.0 5.2 0.00011 38.8 10.0 34 446-479 254-288 (552)
239 PRK13454 F0F1 ATP synthase sub 87.9 13 0.00028 32.6 12.1 50 391-440 57-106 (181)
240 COG1520 FOG: WD40-like repeat 87.9 30 0.00065 34.3 21.4 139 4-182 79-225 (370)
241 KOG0980 Actin-binding protein 87.9 5.7 0.00012 42.6 11.1 7 284-290 254-260 (980)
242 PRK09174 F0F1 ATP synthase sub 87.9 13 0.00028 33.4 12.1 48 391-438 79-126 (204)
243 PRK02889 tolB translocation pr 87.9 33 0.00072 34.8 24.6 148 117-285 220-368 (427)
244 PF15290 Syntaphilin: Golgi-lo 87.8 8.2 0.00018 35.6 10.6 92 393-486 72-169 (305)
245 PF04012 PspA_IM30: PspA/IM30 87.7 8.5 0.00018 35.1 11.3 50 385-434 26-75 (221)
246 PF02191 OLF: Olfactomedin-lik 87.6 24 0.00052 32.8 17.8 165 24-210 65-237 (250)
247 PF13870 DUF4201: Domain of un 87.5 16 0.00034 32.0 12.5 18 470-487 153-170 (177)
248 PRK06231 F0F1 ATP synthase sub 87.5 10 0.00022 34.1 11.3 51 391-441 74-124 (205)
249 KOG2751 Beclin-like protein [S 87.4 6.1 0.00013 38.8 10.3 12 354-365 120-131 (447)
250 PF05335 DUF745: Protein of un 87.3 18 0.0004 31.8 12.4 94 393-486 71-168 (188)
251 KOG1937 Uncharacterized conser 87.3 5.3 0.00012 39.3 9.7 19 411-429 294-312 (521)
252 PF15233 SYCE1: Synaptonemal c 87.2 14 0.00031 29.8 10.5 50 389-438 13-62 (134)
253 KOG1103 Predicted coiled-coil 87.1 5 0.00011 37.9 9.2 6 447-452 222-227 (561)
254 KOG0946 ER-Golgi vesicle-tethe 87.1 7.9 0.00017 41.2 11.4 41 410-450 671-711 (970)
255 PF03962 Mnd1: Mnd1 family; I 87.1 3 6.4E-05 36.9 7.5 12 451-462 116-127 (188)
256 COG1382 GimC Prefoldin, chaper 87.0 14 0.0003 29.7 10.3 14 472-485 94-107 (119)
257 PF12777 MT: Microtubule-bindi 86.9 3.8 8.3E-05 40.2 9.1 27 410-436 15-41 (344)
258 PRK03947 prefoldin subunit alp 86.9 9.7 0.00021 31.8 10.4 23 466-488 112-134 (140)
259 PF14282 FlxA: FlxA-like prote 86.8 2.6 5.7E-05 33.3 6.4 18 447-464 53-70 (106)
260 KOG2129 Uncharacterized conser 86.8 5.2 0.00011 38.9 9.3 11 389-399 107-117 (552)
261 KOG0288 WD40 repeat protein Ti 86.8 5.4 0.00012 38.9 9.4 51 397-447 21-71 (459)
262 KOG4552 Vitamin-D-receptor int 86.8 8.7 0.00019 33.5 9.7 52 432-483 68-120 (272)
263 PF09910 DUF2139: Uncharacteri 86.7 28 0.00061 32.8 15.8 132 115-259 76-219 (339)
264 PF05667 DUF812: Protein of un 86.7 6 0.00013 41.7 10.7 35 393-427 332-366 (594)
265 PF05384 DegS: Sensor protein 86.6 18 0.00038 30.9 11.6 39 391-429 8-46 (159)
266 KOG0977 Nuclear envelope prote 86.6 3.7 8.1E-05 42.1 8.8 18 467-484 347-364 (546)
267 PRK01742 tolB translocation pr 86.5 40 0.00086 34.3 24.3 162 53-262 228-391 (429)
268 TIGR03017 EpsF chain length de 86.5 4.9 0.00011 41.1 10.0 36 444-479 317-352 (444)
269 CHL00118 atpG ATP synthase CF0 86.3 20 0.00043 30.6 12.1 48 391-438 48-95 (156)
270 PRK01742 tolB translocation pr 86.2 41 0.00089 34.1 21.9 140 117-285 228-369 (429)
271 KOG4649 PQQ (pyrrolo-quinoline 86.2 28 0.0006 32.1 13.0 101 38-179 22-126 (354)
272 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.1 18 0.00039 29.9 12.1 24 441-464 62-85 (132)
273 KOG1962 B-cell receptor-associ 86.0 3.4 7.3E-05 36.9 7.2 48 439-486 152-203 (216)
274 KOG0964 Structural maintenance 85.8 8.3 0.00018 41.9 11.0 23 466-488 353-375 (1200)
275 PF07058 Myosin_HC-like: Myosi 85.7 5.6 0.00012 37.0 8.6 22 466-487 63-84 (351)
276 PRK14472 F0F1 ATP synthase sub 85.7 15 0.00033 32.0 11.3 50 391-440 44-93 (175)
277 PF07106 TBPIP: Tat binding pr 85.7 4.3 9.4E-05 35.2 7.8 54 412-465 81-136 (169)
278 PRK07352 F0F1 ATP synthase sub 85.5 16 0.00034 31.9 11.3 50 391-440 45-94 (174)
279 PF14723 SSFA2_C: Sperm-specif 85.5 7.5 0.00016 33.0 8.5 19 411-429 106-124 (179)
280 KOG0977 Nuclear envelope prote 85.4 11 0.00025 38.7 11.5 10 470-479 205-214 (546)
281 PRK13453 F0F1 ATP synthase sub 85.4 22 0.00048 30.9 12.1 50 391-440 44-93 (173)
282 KOG0964 Structural maintenance 85.4 9.1 0.0002 41.6 11.1 78 410-487 411-492 (1200)
283 PF12329 TMF_DNA_bd: TATA elem 85.3 8.2 0.00018 28.2 7.8 23 467-489 45-67 (74)
284 CHL00019 atpF ATP synthase CF0 85.2 16 0.00035 32.2 11.3 47 392-438 51-97 (184)
285 PF10146 zf-C4H2: Zinc finger- 85.2 20 0.00043 32.8 12.0 14 419-432 34-47 (230)
286 PRK09841 cryptic autophosphory 85.2 5.5 0.00012 43.5 10.0 34 447-480 348-381 (726)
287 PF05266 DUF724: Protein of un 85.1 8.6 0.00019 34.0 9.4 51 436-486 122-176 (190)
288 PF14282 FlxA: FlxA-like prote 85.1 1.8 3.8E-05 34.3 4.6 6 470-475 66-71 (106)
289 KOG1332 Vesicle coat complex C 84.9 15 0.00033 33.4 10.7 24 205-233 176-199 (299)
290 PRK13460 F0F1 ATP synthase sub 84.9 18 0.00038 31.5 11.3 50 391-440 42-91 (173)
291 KOG1899 LAR transmembrane tyro 84.9 3.5 7.5E-05 42.3 7.4 52 391-442 113-164 (861)
292 PF10205 KLRAQ: Predicted coil 84.6 9.9 0.00022 29.5 8.2 17 470-486 55-71 (102)
293 PF10146 zf-C4H2: Zinc finger- 84.5 26 0.00055 32.1 12.4 41 410-450 32-72 (230)
294 PF11180 DUF2968: Protein of u 84.4 12 0.00026 32.6 9.6 73 411-486 113-185 (192)
295 KOG0933 Structural maintenance 84.3 13 0.00028 40.7 11.7 6 313-318 661-666 (1174)
296 PF09738 DUF2051: Double stran 84.3 8.5 0.00018 36.7 9.6 16 391-406 79-94 (302)
297 PF06005 DUF904: Protein of un 84.2 13 0.00028 27.0 8.3 29 414-442 8-36 (72)
298 TIGR02658 TTQ_MADH_Hv methylam 84.2 45 0.00097 32.8 30.0 120 38-182 13-142 (352)
299 KOG0976 Rho/Rac1-interacting s 84.1 14 0.0003 39.3 11.5 47 396-442 106-152 (1265)
300 PF10168 Nup88: Nuclear pore c 84.0 14 0.0003 40.0 12.1 14 2-15 41-54 (717)
301 PF14915 CCDC144C: CCDC144C pr 83.8 23 0.00051 33.2 11.7 22 466-487 218-239 (305)
302 TIGR03075 PQQ_enz_alc_DH PQQ-d 83.8 60 0.0013 34.0 25.7 124 94-234 63-198 (527)
303 PRK05759 F0F1 ATP synthase sub 83.8 22 0.00047 30.2 11.3 50 391-440 30-79 (156)
304 PF09849 DUF2076: Uncharacteri 83.8 6.2 0.00014 36.3 8.2 56 446-501 24-87 (247)
305 PRK07353 F0F1 ATP synthase sub 83.7 24 0.00052 29.4 11.3 49 391-439 31-79 (140)
306 PLN00181 protein SPA1-RELATED; 83.7 78 0.0017 35.2 23.9 102 101-229 545-650 (793)
307 PF02646 RmuC: RmuC family; I 83.6 4.1 8.9E-05 39.2 7.4 41 455-501 34-74 (304)
308 KOG3850 Predicted membrane pro 83.6 10 0.00023 36.5 9.6 13 391-403 262-274 (455)
309 PF05667 DUF812: Protein of un 83.6 12 0.00025 39.6 11.1 8 414-421 398-405 (594)
310 KOG0999 Microtubule-associated 83.5 21 0.00045 36.4 11.9 29 410-438 43-71 (772)
311 PF10267 Tmemb_cc2: Predicted 83.5 21 0.00046 35.4 12.2 17 466-482 302-318 (395)
312 PF05622 HOOK: HOOK protein; 83.4 0.35 7.6E-06 52.5 0.0 101 389-489 246-359 (713)
313 PF13863 DUF4200: Domain of un 83.4 23 0.00049 28.8 11.8 22 465-486 84-105 (126)
314 PF08581 Tup_N: Tup N-terminal 83.4 16 0.00035 27.0 9.2 70 417-486 4-74 (79)
315 KOG1003 Actin filament-coating 83.3 30 0.00065 30.2 11.4 10 433-442 90-99 (205)
316 PLN00033 photosystem II stabil 83.2 53 0.0011 32.9 26.8 88 179-286 271-365 (398)
317 TIGR03545 conserved hypothetic 83.1 3.7 8.1E-05 42.8 7.2 19 466-484 241-259 (555)
318 KOG2048 WD40 repeat protein [G 83.0 65 0.0014 33.8 22.0 159 96-284 389-558 (691)
319 COG1340 Uncharacterized archae 83.0 23 0.0005 33.3 11.5 34 387-420 67-100 (294)
320 KOG3647 Predicted coiled-coil 83.0 22 0.00048 32.5 10.9 46 387-432 110-155 (338)
321 KOG3990 Uncharacterized conser 82.9 5.5 0.00012 35.9 7.1 17 391-407 227-243 (305)
322 TIGR03495 phage_LysB phage lys 82.9 12 0.00027 30.8 8.7 52 413-464 22-73 (135)
323 PRK08475 F0F1 ATP synthase sub 82.8 30 0.00066 29.9 12.3 48 391-438 48-95 (167)
324 PF06005 DUF904: Protein of un 82.7 15 0.00032 26.7 8.1 11 415-425 23-33 (72)
325 PF15290 Syntaphilin: Golgi-lo 82.7 13 0.00028 34.3 9.5 27 415-441 73-99 (305)
326 smart00284 OLF Olfactomedin-li 82.6 41 0.0009 31.2 18.2 166 24-209 70-241 (255)
327 PF03178 CPSF_A: CPSF A subuni 82.6 46 0.00099 32.2 14.5 135 38-210 42-190 (321)
328 PF03938 OmpH: Outer membrane 82.6 13 0.00029 31.6 9.5 22 420-441 46-67 (158)
329 TIGR03074 PQQ_membr_DH membran 82.5 82 0.0018 34.6 26.3 35 30-70 187-223 (764)
330 PTZ00421 coronin; Provisional 82.4 65 0.0014 33.4 21.7 64 152-230 138-201 (493)
331 PRK14474 F0F1 ATP synthase sub 82.4 21 0.00047 33.1 11.3 46 391-436 31-76 (250)
332 KOG0994 Extracellular matrix g 82.4 12 0.00027 41.4 10.6 9 54-62 616-624 (1758)
333 PF05278 PEARLI-4: Arabidopsis 82.3 21 0.00046 33.1 10.9 34 428-461 197-230 (269)
334 PF15397 DUF4618: Domain of un 82.3 29 0.00063 32.1 11.8 39 392-433 66-104 (258)
335 KOG0649 WD40 repeat protein [G 82.2 40 0.00087 30.8 14.7 139 127-287 99-245 (325)
336 KOG0994 Extracellular matrix g 82.1 12 0.00025 41.6 10.4 29 395-423 1604-1632(1758)
337 KOG4673 Transcription factor T 82.1 20 0.00044 37.4 11.6 29 452-480 587-623 (961)
338 KOG4005 Transcription factor X 82.1 19 0.00041 32.3 10.0 18 466-483 129-146 (292)
339 KOG0772 Uncharacterized conser 82.0 62 0.0013 32.9 15.3 99 100-214 226-338 (641)
340 PRK15422 septal ring assembly 82.0 17 0.00036 26.6 8.0 31 410-440 18-48 (79)
341 KOG0243 Kinesin-like protein [ 81.9 17 0.00037 40.3 11.7 19 352-370 378-396 (1041)
342 PF02388 FemAB: FemAB family; 81.9 2.9 6.2E-05 42.1 5.8 55 443-497 247-301 (406)
343 PF15066 CAGE1: Cancer-associa 81.7 22 0.00048 35.4 11.2 21 401-421 402-422 (527)
344 PF12217 End_beta_propel: Cata 81.5 44 0.00096 30.8 24.8 272 33-318 21-334 (367)
345 PF07106 TBPIP: Tat binding pr 81.4 9.5 0.00021 33.1 8.2 13 411-423 94-106 (169)
346 PLN02919 haloacid dehalogenase 81.4 1.1E+02 0.0024 35.3 27.6 223 31-280 627-891 (1057)
347 PF03178 CPSF_A: CPSF A subuni 81.4 54 0.0012 31.7 15.9 138 101-261 42-190 (321)
348 PF14988 DUF4515: Domain of un 81.3 31 0.00067 31.0 11.5 66 420-485 50-123 (206)
349 TIGR03321 alt_F1F0_F0_B altern 81.3 24 0.00052 32.7 11.3 47 391-437 31-77 (246)
350 KOG0612 Rho-associated, coiled 81.2 18 0.00039 40.6 11.5 27 439-465 502-528 (1317)
351 PRK13455 F0F1 ATP synthase sub 81.1 29 0.00063 30.5 11.3 48 392-439 54-101 (184)
352 PF09738 DUF2051: Double stran 81.1 25 0.00054 33.6 11.3 15 443-457 117-131 (302)
353 PF05615 THOC7: Tho complex su 81.0 30 0.00065 28.8 10.8 54 411-464 61-114 (139)
354 KOG0979 Structural maintenance 80.9 14 0.00031 40.4 10.5 55 411-465 644-698 (1072)
355 KOG1937 Uncharacterized conser 80.8 18 0.0004 35.8 10.3 27 459-485 400-426 (521)
356 KOG0243 Kinesin-like protein [ 80.8 24 0.00053 39.1 12.4 31 411-441 442-472 (1041)
357 KOG2391 Vacuolar sorting prote 80.8 13 0.00028 35.4 9.1 24 420-443 242-265 (365)
358 PF10205 KLRAQ: Predicted coil 80.7 13 0.00029 28.8 7.6 14 466-479 58-71 (102)
359 PF12761 End3: Actin cytoskele 80.7 10 0.00023 33.2 8.0 13 393-405 100-112 (195)
360 PRK14471 F0F1 ATP synthase sub 80.6 33 0.00072 29.5 11.3 48 391-438 34-81 (164)
361 PF05529 Bap31: B-cell recepto 80.6 7 0.00015 34.7 7.3 33 449-484 158-190 (192)
362 PF05266 DUF724: Protein of un 80.5 23 0.00051 31.3 10.3 67 421-487 114-184 (190)
363 smart00284 OLF Olfactomedin-li 80.4 50 0.0011 30.7 19.8 162 100-281 34-212 (255)
364 TIGR00634 recN DNA repair prot 80.4 11 0.00024 39.9 9.8 8 455-462 332-339 (563)
365 PF10174 Cast: RIM-binding pro 80.4 24 0.00052 38.5 12.2 18 468-485 391-408 (775)
366 KOG0982 Centrosomal protein Nu 80.3 25 0.00054 34.6 10.9 35 411-445 312-346 (502)
367 COG1382 GimC Prefoldin, chaper 80.3 29 0.00062 27.9 10.4 17 470-486 85-101 (119)
368 PF03938 OmpH: Outer membrane 80.2 15 0.00032 31.3 9.0 24 412-435 45-68 (158)
369 PRK13428 F0F1 ATP synthase sub 80.1 21 0.00046 36.4 11.3 46 392-437 28-73 (445)
370 PLN00033 photosystem II stabil 80.0 69 0.0015 32.1 28.1 262 12-338 74-363 (398)
371 PF10226 DUF2216: Uncharacteri 79.8 31 0.00066 30.0 10.2 9 436-444 67-75 (195)
372 TIGR03545 conserved hypothetic 79.8 12 0.00026 39.1 9.6 28 435-462 216-243 (555)
373 KOG4603 TBP-1 interacting prot 79.8 13 0.00029 31.5 7.8 28 412-439 81-108 (201)
374 PF14197 Cep57_CLD_2: Centroso 79.8 20 0.00043 25.8 8.2 17 470-486 48-64 (69)
375 KOG1962 B-cell receptor-associ 79.6 9 0.00019 34.3 7.3 19 440-458 167-185 (216)
376 PF10234 Cluap1: Clusterin-ass 79.6 30 0.00065 32.3 11.0 47 405-451 171-217 (267)
377 KOG0972 Huntingtin interacting 79.6 31 0.00066 32.1 10.8 38 389-426 227-264 (384)
378 PF06818 Fez1: Fez1; InterPro 79.4 33 0.00071 30.4 10.6 49 390-438 11-59 (202)
379 KOG3838 Mannose lectin ERGIC-5 79.4 6 0.00013 38.3 6.5 14 250-263 195-210 (497)
380 PF06810 Phage_GP20: Phage min 79.3 15 0.00032 31.4 8.4 14 448-461 54-67 (155)
381 KOG4643 Uncharacterized coiled 79.3 26 0.00057 38.4 11.7 20 466-485 582-601 (1195)
382 KOG3647 Predicted coiled-coil 79.2 43 0.00094 30.7 11.4 40 411-450 120-159 (338)
383 TIGR01000 bacteriocin_acc bact 79.1 21 0.00045 36.7 11.1 17 470-486 292-308 (457)
384 PF12777 MT: Microtubule-bindi 79.1 8.8 0.00019 37.7 8.0 52 407-458 211-262 (344)
385 KOG2991 Splicing regulator [RN 79.0 38 0.00082 30.9 11.0 59 429-487 241-303 (330)
386 PRK13461 F0F1 ATP synthase sub 78.9 40 0.00087 28.8 11.3 49 391-439 31-79 (159)
387 PF15556 Zwint: ZW10 interacto 78.6 45 0.00098 29.2 12.3 15 470-484 156-170 (252)
388 PF04012 PspA_IM30: PspA/IM30 78.5 28 0.00061 31.6 10.8 46 392-437 26-71 (221)
389 KOG1003 Actin filament-coating 78.5 46 0.00099 29.2 11.6 65 392-456 7-71 (205)
390 TIGR02231 conserved hypothetic 78.3 15 0.00032 38.5 9.9 23 466-488 149-171 (525)
391 PF05700 BCAS2: Breast carcino 78.0 26 0.00056 31.9 10.2 23 466-488 193-215 (221)
392 PRK11519 tyrosine kinase; Prov 77.8 17 0.00037 39.7 10.5 108 387-494 272-395 (719)
393 PF05701 WEMBL: Weak chloropla 77.7 27 0.0006 36.4 11.6 34 402-435 294-327 (522)
394 KOG4603 TBP-1 interacting prot 77.5 17 0.00037 30.8 7.9 16 447-462 125-140 (201)
395 PF08912 Rho_Binding: Rho Bind 77.5 8.8 0.00019 27.3 5.3 21 423-443 9-29 (69)
396 KOG1899 LAR transmembrane tyro 77.4 16 0.00036 37.6 9.2 8 399-406 142-149 (861)
397 PRK14473 F0F1 ATP synthase sub 77.3 46 0.001 28.6 11.3 48 391-438 34-81 (164)
398 PF10498 IFT57: Intra-flagella 77.1 21 0.00045 35.1 9.8 29 400-428 217-245 (359)
399 PF04849 HAP1_N: HAP1 N-termin 77.1 40 0.00087 32.0 11.2 17 385-401 163-179 (306)
400 PRK03947 prefoldin subunit alp 77.0 38 0.00083 28.2 10.3 13 447-459 103-115 (140)
401 PF14197 Cep57_CLD_2: Centroso 77.0 12 0.00027 26.8 6.1 17 462-478 47-63 (69)
402 KOG4571 Activating transcripti 77.0 11 0.00023 35.2 7.2 35 428-462 252-286 (294)
403 PRK14475 F0F1 ATP synthase sub 76.9 48 0.001 28.6 11.3 46 393-438 38-83 (167)
404 COG3206 GumC Uncharacterized p 76.7 15 0.00033 37.7 9.4 36 444-479 348-383 (458)
405 PF15254 CCDC14: Coiled-coil d 76.7 30 0.00064 36.9 11.0 36 420-455 451-486 (861)
406 PF13088 BNR_2: BNR repeat-lik 76.6 66 0.0014 30.1 15.7 231 12-258 29-275 (275)
407 PRK10780 periplasmic chaperone 76.2 7.8 0.00017 33.5 6.0 15 415-429 55-69 (165)
408 COG1842 PspA Phage shock prote 76.1 43 0.00094 30.5 10.9 92 398-489 12-119 (225)
409 KOG4360 Uncharacterized coiled 76.0 32 0.00069 34.8 10.6 92 387-478 210-301 (596)
410 PF15254 CCDC14: Coiled-coil d 76.0 43 0.00093 35.8 11.9 105 385-489 390-521 (861)
411 PLN02919 haloacid dehalogenase 76.0 1.6E+02 0.0034 34.0 31.6 259 30-334 572-891 (1057)
412 PF14073 Cep57_CLD: Centrosome 76.0 52 0.0011 28.5 10.8 106 387-492 9-136 (178)
413 KOG4674 Uncharacterized conser 76.0 27 0.00058 41.4 11.5 108 385-492 1253-1369(1822)
414 PRK13182 racA polar chromosome 75.9 17 0.00038 31.6 8.0 67 429-495 83-151 (175)
415 PF09744 Jnk-SapK_ap_N: JNK_SA 75.8 25 0.00055 30.0 8.8 92 403-494 36-128 (158)
416 PF14583 Pectate_lyase22: Olig 75.7 88 0.0019 31.0 17.5 288 6-330 63-382 (386)
417 PF04799 Fzo_mitofusin: fzo-li 75.6 15 0.00033 31.5 7.3 69 428-496 102-171 (171)
418 PF15188 CCDC-167: Coiled-coil 75.5 9.9 0.00022 28.4 5.4 54 436-489 3-63 (85)
419 PF05701 WEMBL: Weak chloropla 75.5 31 0.00068 36.0 11.3 106 385-490 298-407 (522)
420 PF08657 DASH_Spc34: DASH comp 75.3 8.1 0.00018 36.0 6.2 72 404-475 174-259 (259)
421 PF12004 DUF3498: Domain of un 75.3 0.92 2E-05 46.0 0.0 119 379-497 366-493 (495)
422 KOG0709 CREB/ATF family transc 75.2 6.5 0.00014 39.1 5.7 75 388-470 244-318 (472)
423 PF10174 Cast: RIM-binding pro 75.1 37 0.0008 37.1 11.8 108 387-494 341-461 (775)
424 KOG4460 Nuclear pore complex, 74.9 49 0.0011 33.8 11.6 104 388-491 573-684 (741)
425 KOG4552 Vitamin-D-receptor int 74.9 48 0.0011 29.1 10.1 92 398-489 10-101 (272)
426 PRK02119 hypothetical protein; 74.9 18 0.0004 26.3 6.7 53 438-490 2-58 (73)
427 PF07889 DUF1664: Protein of u 74.8 27 0.00059 28.5 8.3 76 387-465 48-123 (126)
428 KOG0612 Rho-associated, coiled 74.8 33 0.00072 38.6 11.3 106 387-494 593-698 (1317)
429 PRK01156 chromosome segregatio 74.8 34 0.00074 38.6 12.2 104 387-490 164-270 (895)
430 PF07798 DUF1640: Protein of u 74.7 58 0.0013 28.4 11.3 103 383-485 45-154 (177)
431 PRK11519 tyrosine kinase; Prov 74.4 31 0.00067 37.8 11.4 110 394-504 302-411 (719)
432 PF03961 DUF342: Protein of un 74.3 13 0.00029 38.0 8.2 69 419-487 329-407 (451)
433 PHA01750 hypothetical protein 74.3 11 0.00024 26.2 4.9 48 414-463 27-74 (75)
434 PF15358 TSKS: Testis-specific 74.2 12 0.00027 36.3 7.1 100 381-480 131-232 (558)
435 PF07851 TMPIT: TMPIT-like pro 74.1 21 0.00046 34.4 8.7 86 400-485 1-91 (330)
436 PF11068 YlqD: YlqD protein; 74.0 24 0.00052 29.0 7.9 68 416-483 19-88 (131)
437 PF04880 NUDE_C: NUDE protein, 74.0 4.9 0.00011 34.4 4.0 56 398-465 2-57 (166)
438 PF08702 Fib_alpha: Fibrinogen 73.9 53 0.0012 27.6 12.1 97 387-483 27-132 (146)
439 PRK05689 fliJ flagellar biosyn 73.8 33 0.00071 28.8 9.2 79 412-490 4-99 (147)
440 KOG0962 DNA repair protein RAD 73.5 23 0.0005 40.3 9.9 88 404-491 820-907 (1294)
441 KOG0306 WD40-repeat-containing 73.4 1.4E+02 0.0029 32.1 16.6 226 32-315 378-611 (888)
442 PF04102 SlyX: SlyX; InterPro 73.4 14 0.00031 26.5 5.8 48 442-489 1-52 (69)
443 PRK09343 prefoldin subunit bet 73.2 48 0.001 26.9 10.4 85 401-488 5-111 (121)
444 KOG0978 E3 ubiquitin ligase in 73.1 31 0.00068 36.7 10.3 99 383-481 518-620 (698)
445 KOG3859 Septins (P-loop GTPase 73.1 48 0.001 31.0 10.2 83 391-482 321-404 (406)
446 KOG1144 Translation initiation 73.1 13 0.00027 39.6 7.3 88 412-499 216-307 (1064)
447 TIGR01005 eps_transp_fam exopo 73.0 22 0.00047 39.2 9.9 96 404-499 317-413 (754)
448 KOG2891 Surface glycoprotein [ 73.0 29 0.00063 31.9 8.8 103 392-494 309-415 (445)
449 TIGR00570 cdk7 CDK-activating 72.8 39 0.00084 32.2 10.0 101 378-483 86-186 (309)
450 PF10267 Tmemb_cc2: Predicted 72.8 42 0.00091 33.4 10.7 89 400-491 216-306 (395)
451 KOG0316 Conserved WD40 repeat- 72.8 76 0.0016 28.9 17.2 219 32-316 65-290 (307)
452 PRK07720 fliJ flagellar biosyn 72.6 39 0.00084 28.4 9.3 77 414-490 6-99 (146)
453 KOG3215 Uncharacterized conser 72.5 68 0.0015 28.3 10.7 105 389-494 54-181 (222)
454 PRK10803 tol-pal system protei 72.4 12 0.00026 35.1 6.7 59 415-473 38-96 (263)
455 PF06156 DUF972: Protein of un 72.4 12 0.00025 29.7 5.5 53 407-459 5-57 (107)
456 PF07200 Mod_r: Modifier of ru 72.3 55 0.0012 27.6 10.2 88 404-491 28-118 (150)
457 PF14723 SSFA2_C: Sperm-specif 72.3 26 0.00056 29.9 7.7 71 417-487 105-177 (179)
458 COG3823 Glutamine cyclotransfe 72.2 73 0.0016 28.5 15.1 200 86-315 41-247 (262)
459 PF03961 DUF342: Protein of un 72.1 14 0.0003 37.9 7.6 70 426-495 329-408 (451)
460 COG1730 GIM5 Predicted prefold 72.0 51 0.0011 27.6 9.5 98 402-499 5-145 (145)
461 KOG0963 Transcription factor/C 71.8 59 0.0013 33.9 11.6 100 391-490 177-313 (629)
462 PF13747 DUF4164: Domain of un 71.7 21 0.00045 27.2 6.6 57 435-491 5-61 (89)
463 PF07798 DUF1640: Protein of u 71.4 58 0.0013 28.4 10.4 88 398-491 46-135 (177)
464 PF07989 Microtub_assoc: Micro 71.4 25 0.00055 25.7 6.7 59 433-491 2-72 (75)
465 PRK11281 hypothetical protein; 71.4 39 0.00085 38.6 11.3 98 389-486 73-180 (1113)
466 PF08781 DP: Transcription fac 71.4 17 0.00038 30.2 6.5 47 431-477 1-47 (142)
467 KOG2010 Double stranded RNA bi 71.3 15 0.00032 34.6 6.7 60 411-470 148-207 (405)
468 PF04949 Transcrip_act: Transc 71.2 59 0.0013 27.0 11.8 105 388-492 37-149 (159)
469 KOG2896 UV radiation resistanc 71.1 80 0.0017 30.7 11.6 94 391-486 82-176 (377)
470 PF15525 DUF4652: Domain of un 71.1 72 0.0016 27.9 12.4 114 159-275 79-194 (200)
471 PF05278 PEARLI-4: Arabidopsis 71.0 39 0.00084 31.4 9.3 76 398-473 172-249 (269)
472 PF07111 HCR: Alpha helical co 71.0 75 0.0016 33.7 12.2 107 383-489 472-602 (739)
473 TIGR03007 pepcterm_ChnLen poly 71.0 40 0.00086 35.0 10.9 101 404-504 276-400 (498)
474 PRK11281 hypothetical protein; 70.8 33 0.00071 39.2 10.6 112 388-499 58-186 (1113)
475 PF04102 SlyX: SlyX; InterPro 70.7 11 0.00024 27.0 4.7 51 415-465 2-52 (69)
476 PF05010 TACC: Transforming ac 70.5 81 0.0018 28.3 12.3 101 387-487 74-186 (207)
477 PF09744 Jnk-SapK_ap_N: JNK_SA 70.5 61 0.0013 27.7 9.8 104 390-493 51-155 (158)
478 PRK11546 zraP zinc resistance 70.4 22 0.00048 29.6 6.9 59 431-489 47-109 (143)
479 KOG4657 Uncharacterized conser 70.3 82 0.0018 28.3 10.7 107 391-497 21-128 (246)
480 COG4985 ABC-type phosphate tra 70.2 26 0.00055 31.4 7.6 69 420-488 160-247 (289)
481 TIGR00634 recN DNA repair prot 70.2 26 0.00057 37.0 9.4 105 387-491 271-375 (563)
482 TIGR02338 gimC_beta prefoldin, 70.1 53 0.0012 26.0 9.9 92 387-478 1-107 (110)
483 PRK04406 hypothetical protein; 69.9 21 0.00046 26.1 6.0 57 416-472 3-59 (75)
484 PF06156 DUF972: Protein of un 69.7 17 0.00037 28.7 5.9 55 411-465 2-56 (107)
485 PF06160 EzrA: Septation ring 69.7 42 0.00092 35.4 10.7 101 387-487 349-462 (560)
486 PF06476 DUF1090: Protein of u 69.6 11 0.00024 30.2 4.9 50 412-463 65-114 (115)
487 PF05911 DUF869: Plant protein 69.5 30 0.00066 37.6 9.6 85 406-490 585-673 (769)
488 PRK04406 hypothetical protein; 69.5 33 0.00072 25.1 7.0 54 437-490 3-60 (75)
489 COG4946 Uncharacterized protei 69.4 1.3E+02 0.0029 30.4 20.8 225 1-275 285-521 (668)
490 KOG0240 Kinesin (SMY1 subfamil 69.2 66 0.0014 33.2 11.2 97 394-490 412-508 (607)
491 KOG2391 Vacuolar sorting prote 69.2 27 0.0006 33.3 8.0 67 427-493 217-284 (365)
492 PF02090 SPAM: Salmonella surf 69.2 64 0.0014 26.6 11.4 97 391-487 25-145 (147)
493 KOG4807 F-actin binding protei 69.2 98 0.0021 30.2 11.7 91 389-486 421-536 (593)
494 KOG3433 Protein involved in me 69.2 56 0.0012 28.2 9.1 83 391-473 76-158 (203)
495 PF14817 HAUS5: HAUS augmin-li 69.1 61 0.0013 34.5 11.5 92 392-483 75-166 (632)
496 PF06810 Phage_GP20: Phage min 69.1 72 0.0016 27.2 10.1 93 399-491 2-97 (155)
497 PF07321 YscO: Type III secret 69.1 71 0.0015 27.1 9.9 80 410-489 67-146 (152)
498 COG3206 GumC Uncharacterized p 68.8 33 0.00072 35.2 9.6 104 391-494 287-391 (458)
499 PF11068 YlqD: YlqD protein; 68.8 44 0.00096 27.5 8.3 70 423-492 15-90 (131)
500 PF03148 Tektin: Tektin family 68.8 76 0.0017 31.7 11.8 99 387-485 249-368 (384)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.6e-45 Score=369.56 Aligned_cols=313 Identities=20% Similarity=0.286 Sum_probs=257.4
Q ss_pred CCeEeeCCC----CCeEEeccCCCCCCccccceEEEECCEEEEEcCCCC-C-ccCCceEEEECCCCceeEeeeccccccC
Q 010571 4 GSWHLELPY----DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN-G-RFLSDVQVFDLRSLAWSNLRLETELDAD 77 (507)
Q Consensus 4 ~~~~~d~~~----~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-~-~~~~~~~~~d~~t~~W~~~~~~~~~~~~ 77 (507)
++|.++|.+ ++|..+...+..|.||.+|+++++++.||+|||... . ...+++++||+.+++|..++.+..
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~---- 213 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGD---- 213 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCC----
Confidence 466777654 899999877778999999999999999999999753 2 344689999999999998766532
Q ss_pred ccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEE
Q 010571 78 KTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIF 157 (507)
Q Consensus 78 ~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~ 157 (507)
.|+..|.+|++++++++||+|||..... .++++++||+.+++|+.+.+.+..|.+|.+|++++++++||+|
T Consensus 214 --------~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~ 284 (470)
T PLN02193 214 --------VPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVF 284 (470)
T ss_pred --------CCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEE
Confidence 1222467899999999999999987544 4789999999999999998555558999999999999999999
Q ss_pred cCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeec
Q 010571 158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK 237 (507)
Q Consensus 158 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~ 237 (507)
||.+... ..+++++||+.+++|+.+++.+.+|.+|..|+++++.+ ++|++||.++. ..+++++||+.+++|+.+...
T Consensus 285 GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~g-kiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~ 361 (470)
T PLN02193 285 GGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQG-KVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETF 361 (470)
T ss_pred CCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECC-cEEEEECCCCC-ccCceEEEECCCCEEEEeccC
Confidence 9997644 47899999999999999987777788999999998854 59999997643 468999999999999998776
Q ss_pred CCCCCCCcceEEEEECCEEEEEeccCCC---------CCcceEEEEEcCcCeeEEeccCCC--CCCCCCCCCceEEEEEc
Q 010571 238 GDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKG--RNPLASEGLSVCSAIIE 306 (507)
Q Consensus 238 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~d~~~~d~~~~~W~~~~~~~~--~~p~~~~~~~~~~~~~~ 306 (507)
+..|.+|..|++++++++|||+||.... ...+++++||+.+++|+.++.++. ..|.+|..++++...+.
T Consensus 362 g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~ 441 (470)
T PLN02193 362 GVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTID 441 (470)
T ss_pred CCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEc
Confidence 7789999999999999999999997531 134789999999999999987653 34556655555555566
Q ss_pred CceEEEEEcccC--CCcCCeEEEEECCC
Q 010571 307 GEHHLVAFGGYN--GKYNNEVFVMRLKP 332 (507)
Q Consensus 307 ~~~~l~v~GG~~--~~~~~~v~~~~~~~ 332 (507)
+++.|++|||.+ +...+|+|+|++.+
T Consensus 442 ~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 442 GKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCceEEEEcCCCCccccccceEEEecCC
Confidence 666799999996 45789999998753
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.4e-43 Score=347.54 Aligned_cols=307 Identities=21% Similarity=0.285 Sum_probs=244.4
Q ss_pred CCCCCeEEeccC-CCCCCccccceEEEECCEEEEEcCCCC--CccCCceEEEECCCCceeEeeeccccccCccccCCccC
Q 010571 10 LPYDLWVTLPVS-GARPSPRYKHAAAVFDQKLYIVGGSRN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE 86 (507)
Q Consensus 10 ~~~~~W~~~~~~-~~~p~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~ 86 (507)
+....|.++... +.+|.||.+|+++++++.|||+||... ....+++++||+.+++|..+++++. .
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~------------~ 71 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD------------V 71 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC------------C
Confidence 467889999763 347999999999999999999999753 3345789999999999999886542 1
Q ss_pred CCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecC--CCCCCCcccceEEEECCEEEEEcCcCCCC
Q 010571 87 VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLVGSRLIIFGGEDRSR 164 (507)
Q Consensus 87 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~l~~~GG~~~~~ 164 (507)
+...+.+|++++++++||+|||...... .+++++||+.+++|..++.. ...|.+|.+|++++++++||+|||.+...
T Consensus 72 p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~ 150 (341)
T PLN02153 72 PRISCLGVRMVAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGG 150 (341)
T ss_pred CCCccCceEEEEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCC
Confidence 1223558999999999999999865543 67899999999999998732 12388999999999999999999986432
Q ss_pred -----CccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCC--------cCCCcEEEEECCCCcE
Q 010571 165 -----KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS--------IFFNDLHVLDLQTNEW 231 (507)
Q Consensus 165 -----~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~--------~~~~~i~~~d~~~~~W 231 (507)
..++++++||+.+++|..++..+..|.+|.+|++++++ ++|||+||.... ..++++++||+.+++|
T Consensus 151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQ-GKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEEC-CeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence 23578999999999999998776667899999988884 559999986421 2368899999999999
Q ss_pred EeeeecCCCCCCCcceEEEEECCEEEEEeccCC---------CCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEE
Q 010571 232 SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN---------NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCS 302 (507)
Q Consensus 232 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~---------~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~ 302 (507)
+.+...+.+|.+|..|++++++++||||||... ....+++|.||+.+++|+.+..... .|.++..+.++.
T Consensus 230 ~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~-~~~pr~~~~~~~ 308 (341)
T PLN02153 230 TEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGE-PAMPRGWTAYTT 308 (341)
T ss_pred EeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCC-CCCCCccccccc
Confidence 998777788999999999999999999999632 1225699999999999999864322 234454544455
Q ss_pred EEEcCceEEEEEcccCC--CcCCeEEEEECC
Q 010571 303 AIIEGEHHLVAFGGYNG--KYNNEVFVMRLK 331 (507)
Q Consensus 303 ~~~~~~~~l~v~GG~~~--~~~~~v~~~~~~ 331 (507)
+.+.+++.||++||.++ ...+|+|+|+..
T Consensus 309 ~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 309 ATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred cccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 56666668999999965 468999999763
No 3
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=4.6e-44 Score=311.14 Aligned_cols=293 Identities=27% Similarity=0.473 Sum_probs=247.2
Q ss_pred CeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCcc-----CCceEEEECCCCceeEeeeccccccCccccCCccCCC
Q 010571 14 LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRF-----LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVL 88 (507)
Q Consensus 14 ~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-----~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p 88 (507)
.|+.--.. -+.|..|+++.+|+.||-|||..++.. .-+|.++|..+.+|.++|+... +..+.... +..|
T Consensus 3 ~WTVHLeG---GPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~--ka~i~~~y-p~VP 76 (392)
T KOG4693|consen 3 TWTVHLEG---GPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGIT--KATIESPY-PAVP 76 (392)
T ss_pred eEEEEecC---CcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccc--cccccCCC-Cccc
Confidence 57655533 345999999999999999999776432 2369999999999999987432 22333322 4678
Q ss_pred CCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCC-CCCcc
Q 010571 89 PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR-SRKLL 167 (507)
Q Consensus 89 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~-~~~~~ 167 (507)
..|++|+++.+++++|+|||.+......|.++.||+.++.|.+....|..|.+|.+|++|++++.+|||||+.. ..++.
T Consensus 77 yqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS 156 (392)
T KOG4693|consen 77 YQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFS 156 (392)
T ss_pred hhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhh
Confidence 88999999999999999999999888889999999999999999999999999999999999999999999954 34578
Q ss_pred CcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCC---------CcCCCcEEEEECCCCcEEeeeecC
Q 010571 168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH---------SIFFNDLHVLDLQTNEWSQPEIKG 238 (507)
Q Consensus 168 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~---------~~~~~~i~~~d~~~~~W~~~~~~~ 238 (507)
++++.||+.|.+|+.+.++|.+|.-|..|++++++ +++|||||..+ ..+++.|..+|+.+..|......+
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 99999999999999999999999999999999995 67999999853 256778999999999999987777
Q ss_pred CCCCCCcceEEEEECCEEEEEeccCCC--CCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcc
Q 010571 239 DLVTGRAGHAGITIDENWYIVGGGDNN--NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG 316 (507)
Q Consensus 239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~--~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG 316 (507)
..|..|.+|++.++++.||||||+++. ..++|+|.||+.+..|+.|. ..+..|.+|.+. |++++.+ .+|+|||
T Consensus 236 ~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~-~~Gk~P~aRRRq--C~~v~g~--kv~LFGG 310 (392)
T KOG4693|consen 236 MKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS-VRGKYPSARRRQ--CSVVSGG--KVYLFGG 310 (392)
T ss_pred cCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeee-ccCCCCCcccce--eEEEECC--EEEEecC
Confidence 889999999999999999999999875 34789999999999999875 455556666555 4545555 7999999
Q ss_pred cC
Q 010571 317 YN 318 (507)
Q Consensus 317 ~~ 318 (507)
..
T Consensus 311 Ts 312 (392)
T KOG4693|consen 311 TS 312 (392)
T ss_pred CC
Confidence 65
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=6.6e-40 Score=336.50 Aligned_cols=272 Identities=23% Similarity=0.344 Sum_probs=239.3
Q ss_pred EECCEEEEEcCCCC-CccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCC
Q 010571 35 VFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS 113 (507)
Q Consensus 35 ~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 113 (507)
...+.||++||..+ ....+.+..||+.++.|..+..++. +|..+++++++|+||++||.+...
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~----------------~r~~~~~~~~~~~lYv~GG~~~~~ 345 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS----------------PRCRVGVAVLNGKLYVVGGYDSGS 345 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc----------------ccccccEEEECCEEEEEccccCCC
Confidence 35689999999986 7788999999999999999987754 899999999999999999999544
Q ss_pred CCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010571 114 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 193 (507)
Q Consensus 114 ~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r 193 (507)
...+++++||+.+++|..++ +|+.+|.+++++++++.||++||.++.. .++++++||+.+++|..+. +++.+|
T Consensus 346 ~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va---~m~~~r 418 (571)
T KOG4441|consen 346 DRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVA---PMLTRR 418 (571)
T ss_pred cccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccC---CCCcce
Confidence 45889999999999999988 9999999999999999999999999554 5889999999999999997 677799
Q ss_pred CCceEEEEcCcEEEEEeCCCCCc-CCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEE
Q 010571 194 YDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI 272 (507)
Q Consensus 194 ~~~~~~~~~~~~l~i~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~ 272 (507)
++|+++++ +++||++||.++.. +++.+.+|||.++.|+.+ ++|+.+|.+|+++++++.||++||+++......++
T Consensus 419 ~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~---~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE 494 (571)
T KOG4441|consen 419 SGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI---APMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVE 494 (571)
T ss_pred eeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeec---CCcccccccceEEEECCEEEEECCccCCCccceEE
Confidence 99999988 55699999998876 999999999999999996 78999999999999999999999998866677799
Q ss_pred EEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC-cCCeEEEEECCCCCCCCCccc
Q 010571 273 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIF 341 (507)
Q Consensus 273 ~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~~~~~~~w~~~~~~ 341 (507)
.||+.+++|+.+++|+. ++.+.. .++.+ +.||++||+++. ..+.+..||+.++.|.....+
T Consensus 495 ~ydp~~~~W~~v~~m~~----~rs~~g--~~~~~--~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 495 RYDPETNQWTMVAPMTS----PRSAVG--VVVLG--GKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred EEcCCCCceeEcccCcc----cccccc--EEEEC--CEEEEEecccCccccceeEEcCCCCCceeeCCCc
Confidence 99999999999977743 333333 33343 489999998864 789999999999999987773
No 5
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=328.73 Aligned_cols=297 Identities=33% Similarity=0.590 Sum_probs=260.9
Q ss_pred cCCCCCCccccceEEEECCEEEEEcCCCCCccCCc--eEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeE
Q 010571 20 VSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSD--VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMV 97 (507)
Q Consensus 20 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~--~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~ 97 (507)
..+..|.+|++|+++.+++++|||||........+ +++||..+..|......+ ..|++|.+|+++
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g-------------~~p~~r~g~~~~ 119 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG-------------DEPSPRYGHSLS 119 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC-------------CCCCcccceeEE
Confidence 46678999999999999999999999877666666 999999999999888775 447899999999
Q ss_pred EECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571 98 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET 177 (507)
Q Consensus 98 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t 177 (507)
+++++||+|||........++++.||+.|++|..+.+.+.+|++|.+|+++++++++|||||.+......|++|+||+.+
T Consensus 120 ~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 120 AVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLET 199 (482)
T ss_pred EECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccc
Confidence 99999999999997555688999999999999999999999999999999999999999999988877899999999999
Q ss_pred CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC-CCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEE
Q 010571 178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW 256 (507)
Q Consensus 178 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l 256 (507)
.+|..+.+.|..|.||.+|+++++++. ++||||.. ++.+++|+|.||+.+..|..+...+.+|.+|++|+.++.++++
T Consensus 200 ~~W~~~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~ 278 (482)
T KOG0379|consen 200 STWSELDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHL 278 (482)
T ss_pred ccceecccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEE
Confidence 999999999999999999999999766 66666665 7789999999999999999988889999999999999999999
Q ss_pred EEEeccCCC--CCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccC--CCcCCeEEEEEC
Q 010571 257 YIVGGGDNN--NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMRL 330 (507)
Q Consensus 257 ~v~GG~~~~--~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~v~~~~~ 330 (507)
+++||.... ..+.++|.|++.+..|..+.......|.++..+..+.+...+...+.++||.. ....++++.+..
T Consensus 279 ~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (482)
T KOG0379|consen 279 LLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQI 356 (482)
T ss_pred EEEcCCcccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccc
Confidence 999998764 25889999999999999998877566788888888877666666777777733 345566665554
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.2e-39 Score=332.61 Aligned_cols=252 Identities=28% Similarity=0.418 Sum_probs=234.6
Q ss_pred CeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCC-CCccCCceEEEECCCCceeEeeeccccccCccccCC
Q 010571 5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG 83 (507)
Q Consensus 5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~ 83 (507)
+-+|||..+.|..+. ++|.+|..++++++++.||++||.+ +...++.+++||+.+++|..+++|..
T Consensus 303 ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~---------- 369 (571)
T KOG4441|consen 303 VECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT---------- 369 (571)
T ss_pred eEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC----------
Confidence 449999999999999 7999999999999999999999999 67788999999999999999998865
Q ss_pred ccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCC
Q 010571 84 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS 163 (507)
Q Consensus 84 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~ 163 (507)
+|..+++++++|.||++||.+.... .+++++|||.+++|..+. +|+.+|+++++++++++||++||.+..
T Consensus 370 ------~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 370 ------KRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ------ccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 8999999999999999999996555 889999999999999998 899999999999999999999999888
Q ss_pred CCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCC
Q 010571 164 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG 243 (507)
Q Consensus 164 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~ 243 (507)
..+.+++++|||.+++|+.++ +++.+|.+++++++ +++||++||.++...+..+.+||+.+++|+.+ .+++.+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v---~~m~~~ 512 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMV---APMTSP 512 (571)
T ss_pred ccccceEEEEcCCCCceeecC---CcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEc---ccCccc
Confidence 767999999999999999998 78899999998888 55699999999877778899999999999997 678999
Q ss_pred CcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571 244 RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 244 r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 286 (507)
|..++++++++.+|++||+++...++.+..||+.+++|+.+..
T Consensus 513 rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 513 RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 9999999999999999999999889999999999999999876
No 7
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=332.01 Aligned_cols=252 Identities=12% Similarity=0.151 Sum_probs=219.5
Q ss_pred CCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCC-CCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571 4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 82 (507)
Q Consensus 4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~ 82 (507)
.+|+|||.++.|..++ ++|.+|.+|+++++++.||++||.. +....+.+++||+.++.|..+++++
T Consensus 273 ~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~---------- 339 (557)
T PHA02713 273 CILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI---------- 339 (557)
T ss_pred CEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc----------
Confidence 4699999999999998 7999999999999999999999975 3445788999999999999988775
Q ss_pred CccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCC
Q 010571 83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR 162 (507)
Q Consensus 83 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~ 162 (507)
.+|.++++++++++||++||..... ..+++++|||.+++|..++ +||.+|.++++++++++||++||.+.
T Consensus 340 ------~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~ 409 (557)
T PHA02713 340 ------KNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTE 409 (557)
T ss_pred ------chhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCc
Confidence 3899999999999999999986443 3678999999999999988 89999999999999999999999864
Q ss_pred CC-----------------CccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc-CCCcEEEE
Q 010571 163 SR-----------------KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVL 224 (507)
Q Consensus 163 ~~-----------------~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~-~~~~i~~~ 224 (507)
.. ...+++++|||.+++|+.++ +++.+|..+++++++ ++||++||.++.. ..+.+++|
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~-~~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHK-DDIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred ccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEEC-CEEEEEeCCCCCCccceeEEEe
Confidence 31 12578999999999999987 688899999998885 5599999986543 33568999
Q ss_pred ECCC-CcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCC
Q 010571 225 DLQT-NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK 288 (507)
Q Consensus 225 d~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~ 288 (507)
||.+ ++|+.+ +++|.+|..+++++++++||++||.++. ..+.+||+.+++|+.+.+..
T Consensus 486 dp~~~~~W~~~---~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 486 NTNTYNGWELI---TTTESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred cCCCCCCeeEc---cccCcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhhhc
Confidence 9999 899986 6899999999999999999999998763 36889999999999887653
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.8e-38 Score=318.78 Aligned_cols=292 Identities=21% Similarity=0.309 Sum_probs=234.9
Q ss_pred ccceEEEECCEEEEEcCCCCCccCCc--eEEEECCC----CceeEeeeccccccCccccCCccCCCCCccceeeEEECCE
Q 010571 29 YKHAAAVFDQKLYIVGGSRNGRFLSD--VQVFDLRS----LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTK 102 (507)
Q Consensus 29 ~~~~~~~~~~~lyv~GG~~~~~~~~~--~~~~d~~t----~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~ 102 (507)
.+...+..+++|+.|+|..... ++. ++.+++.+ ++|..+.++. ..|.+|.+|++++++++
T Consensus 112 ~g~~f~~~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~-------------~~P~pR~~h~~~~~~~~ 177 (470)
T PLN02193 112 PGVKFVLQGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKG-------------EGPGLRCSHGIAQVGNK 177 (470)
T ss_pred CCCEEEEcCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCC-------------CCCCCccccEEEEECCE
Confidence 3455555689999999976543 444 45557655 7999987653 34779999999999999
Q ss_pred EEEEcccCCCCC-CcceEEEEECCCCcEEEeecCCCCCC-CcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcE
Q 010571 103 LLILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 180 (507)
Q Consensus 103 iyv~GG~~~~~~-~~~~~~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W 180 (507)
||++||...... ..+++++||+.+++|..+++.+.+|. +|.++++++++++||+|||.+... .++++++||+.+++|
T Consensus 178 iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W 256 (470)
T PLN02193 178 IYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEW 256 (470)
T ss_pred EEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEE
Confidence 999999854322 34679999999999999876666665 467889999999999999987543 579999999999999
Q ss_pred EEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEe
Q 010571 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVG 260 (507)
Q Consensus 181 ~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~G 260 (507)
+.+.+.+..|.+|..|+++++ +++||||||.+....+++++.||+.+++|+.+...+.+|.+|..|+++++++++|++|
T Consensus 257 ~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviG 335 (470)
T PLN02193 257 KLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVY 335 (470)
T ss_pred EEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEE
Confidence 999876666889999999887 5569999999877788999999999999999876566788999999999999999999
Q ss_pred ccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC----------CcCCeEEEEEC
Q 010571 261 GGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRL 330 (507)
Q Consensus 261 G~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~~~~ 330 (507)
|.++. ..+++++||+.+++|++++.+.. .|.+|..++++ ++. +.|||+||... ...+++|+||+
T Consensus 336 G~~g~-~~~dv~~yD~~t~~W~~~~~~g~-~P~~R~~~~~~--~~~--~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 336 GFNGC-EVDDVHYYDPVQDKWTQVETFGV-RPSERSVFASA--AVG--KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred CCCCC-ccCceEEEECCCCEEEEeccCCC-CCCCcceeEEE--EEC--CEEEEECCccCCccccccCccceeccEEEEEc
Confidence 97654 36899999999999999876532 35566665543 444 48999999752 24579999999
Q ss_pred CCCCCCCCcccC
Q 010571 331 KPRDIPRPKIFQ 342 (507)
Q Consensus 331 ~~~~w~~~~~~~ 342 (507)
.++.|+.+..+.
T Consensus 410 ~t~~W~~~~~~~ 421 (470)
T PLN02193 410 ETLQWERLDKFG 421 (470)
T ss_pred CcCEEEEcccCC
Confidence 999999876543
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1e-37 Score=306.07 Aligned_cols=263 Identities=21% Similarity=0.291 Sum_probs=211.2
Q ss_pred CCCeEeeCCCCCeEEeccCCCCCCc-cccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571 3 SGSWHLELPYDLWVTLPVSGARPSP-RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED 81 (507)
Q Consensus 3 ~~~~~~d~~~~~W~~~~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~ 81 (507)
+++|+||+.++.|..++..+..|.+ +.+|++++++++||+|||......++++++||+.+++|..++.+..
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-------- 121 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDE-------- 121 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCC--------
Confidence 6899999999999998854434443 4589999999999999998777678899999999999999886542
Q ss_pred CCccCCCCCccceeeEEECCEEEEEcccCCCCC-----CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEE
Q 010571 82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLII 156 (507)
Q Consensus 82 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-----~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~ 156 (507)
...|.+|.+|++++.+++|||+||...... ..+++++||+.+++|..++..+.+|.+|.++++++++++||+
T Consensus 122 ---~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv 198 (341)
T PLN02153 122 ---EGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWV 198 (341)
T ss_pred ---CCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEE
Confidence 234678999999999999999999864321 246899999999999999866556789999999999999999
Q ss_pred EcCcCCC-------CCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC---------CCcCCCc
Q 010571 157 FGGEDRS-------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS---------HSIFFND 220 (507)
Q Consensus 157 ~GG~~~~-------~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~---------~~~~~~~ 220 (507)
+||.+.. ....+++++||+.+++|+.+...+.+|.+|..|++++++ ++||||||.. .....|+
T Consensus 199 ~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~n~ 277 (341)
T PLN02153 199 VYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVG-KYIIIFGGEVWPDLKGHLGPGTLSNE 277 (341)
T ss_pred EeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEEC-CEEEEECcccCCcccccccccccccc
Confidence 9997421 123678999999999999999888889999999999885 5699999973 2245689
Q ss_pred EEEEECCCCcEEeeeecCCCCCC--CcceEEEEE--CCEEEEEeccCCC-CCcceEEEEEcC
Q 010571 221 LHVLDLQTNEWSQPEIKGDLVTG--RAGHAGITI--DENWYIVGGGDNN-NGCQETIVLNMT 277 (507)
Q Consensus 221 i~~~d~~~~~W~~~~~~~~~p~~--r~~~~~~~~--~~~l~v~GG~~~~-~~~~d~~~~d~~ 277 (507)
+++||+.+++|+.+...+..|.| |..|+++.+ ++.|||+||.+.. ..++|+|.|+..
T Consensus 278 v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 278 GYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred EEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 99999999999998643333444 444444443 3489999998664 567899999754
No 10
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=277.28 Aligned_cols=247 Identities=25% Similarity=0.442 Sum_probs=218.1
Q ss_pred CCeEeeCCCCCeEEeccC-------C---CCCCccccceEEEECCEEEEEcCCCC-CccCCceEEEECCCCceeEeeecc
Q 010571 4 GSWHLELPYDLWVTLPVS-------G---ARPSPRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLET 72 (507)
Q Consensus 4 ~~~~~d~~~~~W~~~~~~-------~---~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~ 72 (507)
|+=+||..+-+|+++|.. + -.|-.|+||+++...+++|+|||.+. ....|.++.|||.++.|.+....+
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G 124 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG 124 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceee
Confidence 566788889999998751 1 12456999999999999999999887 456788999999999999877765
Q ss_pred ccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCC-CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC
Q 010571 73 ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG 151 (507)
Q Consensus 73 ~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~ 151 (507)
..|.+|.+|++|++++.+|||||+..... ..++++++|+.|.+|+.+.+.|.+|.-|..|++++++
T Consensus 125 -------------~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~ 191 (392)
T KOG4693|consen 125 -------------FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID 191 (392)
T ss_pred -------------ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhcc
Confidence 55889999999999999999999977655 6789999999999999999999999999999999999
Q ss_pred CEEEEEcCcCCC--------CCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCC--cCCCcE
Q 010571 152 SRLIIFGGEDRS--------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS--IFFNDL 221 (507)
Q Consensus 152 ~~l~~~GG~~~~--------~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~--~~~~~i 221 (507)
+.+|||||+.+. ..+++.+..||+.|..|...+..+-.|.+|..|++.++ ++.+|||||+.+. .-.||+
T Consensus 192 ~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~HfndL 270 (392)
T KOG4693|consen 192 GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFNDL 270 (392)
T ss_pred ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEE-cceEEEecccchhhhhhhcce
Confidence 999999998542 24678899999999999999988888999999999988 5669999999764 567999
Q ss_pred EEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCC
Q 010571 222 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN 264 (507)
Q Consensus 222 ~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 264 (507)
|+||+.+..|..+...|..|.+|..+++++.++++|+|||...
T Consensus 271 y~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 271 YCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred eecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 9999999999999999999999999999999999999999653
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=9.5e-37 Score=314.88 Aligned_cols=264 Identities=12% Similarity=0.191 Sum_probs=216.6
Q ss_pred EEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcce
Q 010571 39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 118 (507)
Q Consensus 39 ~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 118 (507)
.|++.||.. ......+++||+.+++|..+++++ .+|.+|++++++++||++||........++
T Consensus 259 ~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~mp----------------~~r~~~~~a~l~~~IYviGG~~~~~~~~~~ 321 (557)
T PHA02713 259 CLVCHDTKY-NVCNPCILVYNINTMEYSVISTIP----------------NHIINYASAIVDNEIIIAGGYNFNNPSLNK 321 (557)
T ss_pred EEEEecCcc-ccCCCCEEEEeCCCCeEEECCCCC----------------ccccceEEEEECCEEEEEcCCCCCCCccce
Confidence 355555521 223357899999999999988765 378899999999999999997644344678
Q ss_pred EEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceE
Q 010571 119 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA 198 (507)
Q Consensus 119 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~ 198 (507)
+++||+.+++|..++ +||.+|..+++++++++||++||.++.. ..+++++||+.+++|+.++ ++|.+|..+++
T Consensus 322 v~~Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~ 394 (557)
T PHA02713 322 VYKINIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGM 394 (557)
T ss_pred EEEEECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccE
Confidence 999999999999988 8999999999999999999999986543 4788999999999999987 78999999998
Q ss_pred EEEcCcEEEEEeCCCCC------------------cCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEe
Q 010571 199 ALHANRYLIVFGGCSHS------------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVG 260 (507)
Q Consensus 199 ~~~~~~~l~i~GG~~~~------------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~G 260 (507)
+++ +++||++||.++. ..++.+++|||.+++|+.+ ++++.+|..+++++++++|||+|
T Consensus 395 ~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v---~~m~~~r~~~~~~~~~~~IYv~G 470 (557)
T PHA02713 395 CVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL---PNFWTGTIRPGVVSHKDDIYVVC 470 (557)
T ss_pred EEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec---CCCCcccccCcEEEECCEEEEEe
Confidence 888 5669999998642 1357899999999999986 67899999999999999999999
Q ss_pred ccCCCCCc-ceEEEEEcCc-CeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCCCCC
Q 010571 261 GGDNNNGC-QETIVLNMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRP 338 (507)
Q Consensus 261 G~~~~~~~-~d~~~~d~~~-~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~~~ 338 (507)
|.++.... +.+++||+.+ ++|+.+++|+. +|.++ ..+++++ .||++||+++ ...+.+||+.+++|+..
T Consensus 471 G~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~----~r~~~--~~~~~~~--~iyv~Gg~~~--~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 471 DIKDEKNVKTCIFRYNTNTYNGWELITTTES----RLSAL--HTILHDN--TIMMLHCYES--YMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCCCCCccceeEEEecCCCCCCeeEccccCc----ccccc--eeEEECC--EEEEEeeecc--eeehhhcCcccccccch
Confidence 98654333 4578999999 89999988843 34443 3444544 8999999887 35789999999999975
Q ss_pred cc
Q 010571 339 KI 340 (507)
Q Consensus 339 ~~ 340 (507)
..
T Consensus 541 ~~ 542 (557)
T PHA02713 541 CH 542 (557)
T ss_pred hh
Confidence 54
No 12
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=308.89 Aligned_cols=252 Identities=19% Similarity=0.299 Sum_probs=214.8
Q ss_pred EeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCC-ccCCceEEEECCCCceeEeeeccccccCccccCCcc
Q 010571 7 HLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNG-RFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85 (507)
Q Consensus 7 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~ 85 (507)
+|++..++|..++ ..| .+..|+++++++.||++||.... ...+++++||+.+++|..++.++
T Consensus 268 ~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~------------- 330 (534)
T PHA03098 268 TNYSPLSEINTII---DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI------------- 330 (534)
T ss_pred ecchhhhhccccc---Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC-------------
Confidence 5778888898876 333 34567889999999999998653 45678999999999998887654
Q ss_pred CCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCC
Q 010571 86 EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRK 165 (507)
Q Consensus 86 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~ 165 (507)
.+|.+|++++++++||++||..... ..+++++||+.+++|+..+ ++|.+|.+++++.++++||++||......
T Consensus 331 ---~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~ 403 (534)
T PHA03098 331 ---YPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDE 403 (534)
T ss_pred ---cccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCc
Confidence 4899999999999999999987433 4778999999999999987 89999999999999999999999865555
Q ss_pred ccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc---CCCcEEEEECCCCcEEeeeecCCCCC
Q 010571 166 LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVT 242 (507)
Q Consensus 166 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~ 242 (507)
.++++++||+.+++|+.+. ++|.+|.+|+++.+ +++|||+||..... ..+.+++||+.+++|+.+ +++|.
T Consensus 404 ~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~ 476 (534)
T PHA03098 404 LLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL---SSLNF 476 (534)
T ss_pred ccceEEEEeCCCCeeeecC---CCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeC---CCCCc
Confidence 6789999999999999986 67889999998887 55699999986432 356799999999999997 56788
Q ss_pred CCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCC
Q 010571 243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG 289 (507)
Q Consensus 243 ~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~ 289 (507)
+|..|++++++++|||+||.+.....+++++||+.+++|+.++.+|.
T Consensus 477 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 477 PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 89999999999999999998766657889999999999999877643
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1e-34 Score=285.97 Aligned_cols=272 Identities=18% Similarity=0.182 Sum_probs=206.3
Q ss_pred CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEC--CCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC
Q 010571 23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL--RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG 100 (507)
Q Consensus 23 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~--~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~ 100 (507)
++|.+|..+++|++++.|||+||.. .+.+++||+ .+++|..++.++. .+|..|++++++
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~----~~~~~~~d~~~~~~~W~~l~~~p~---------------~~R~~~~~~~~~ 63 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSA----GTSWYKLDLKKPSKGWQKIADFPG---------------GPRNQAVAAAID 63 (346)
T ss_pred CCCccccCceEEEECCEEEEEcccc----CCeeEEEECCCCCCCceECCCCCC---------------CCcccceEEEEC
Confidence 5889999999989999999999964 257899996 5788999887642 279999999999
Q ss_pred CEEEEEcccCCCC-----CCcceEEEEECCCCcEEEeecCCCCCCCcccceEE-EECCEEEEEcCcCCCC----------
Q 010571 101 TKLLILGGHYKKS-----SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT-LVGSRLIIFGGEDRSR---------- 164 (507)
Q Consensus 101 ~~iyv~GG~~~~~-----~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~l~~~GG~~~~~---------- 164 (507)
++||++||..... ..++++++||+.+++|+.+.. .+|.+|.+++++ +++++||++||.+...
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~ 141 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSA 141 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhh
Confidence 9999999986432 136789999999999999862 467777777776 6899999999986320
Q ss_pred -----------------------CccCcEEEEEcCCCcEEEeecCCCCCC-CCCCceEEEEcCcEEEEEeCCCCCc-CCC
Q 010571 165 -----------------------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHSI-FFN 219 (507)
Q Consensus 165 -----------------------~~~~~~~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~l~i~GG~~~~~-~~~ 219 (507)
...+++++||+.+++|+.+. ++|. +|..++++.+ +++|||+||..... ...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 217 (346)
T TIGR03547 142 ADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTA 217 (346)
T ss_pred cCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEE-CCEEEEEeeeeCCCccch
Confidence 12478999999999999986 5664 6788877777 55699999985432 335
Q ss_pred cEEEEE--CCCCcEEeeeecCCCCCCC-------cceEEEEECCEEEEEeccCCCC-----------------CcceEEE
Q 010571 220 DLHVLD--LQTNEWSQPEIKGDLVTGR-------AGHAGITIDENWYIVGGGDNNN-----------------GCQETIV 273 (507)
Q Consensus 220 ~i~~~d--~~~~~W~~~~~~~~~p~~r-------~~~~~~~~~~~l~v~GG~~~~~-----------------~~~d~~~ 273 (507)
+++.|+ +.++.|..+ .++|.+| .+|++++++++|||+||.+... ....+.+
T Consensus 218 ~~~~y~~~~~~~~W~~~---~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 294 (346)
T TIGR03547 218 EVKQYLFTGGKLEWNKL---PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV 294 (346)
T ss_pred heEEEEecCCCceeeec---CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Confidence 566665 467799986 4555554 4566788999999999975211 1235789
Q ss_pred EEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC--CcCCeEEEEEC
Q 010571 274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRL 330 (507)
Q Consensus 274 ~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~v~~~~~ 330 (507)
||+.+++|+.++.+|. ++..+ +++++++ .|||+||.+. ...++|+.+.+
T Consensus 295 yd~~~~~W~~~~~lp~----~~~~~--~~~~~~~--~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 295 YALDNGKWSKVGKLPQ----GLAYG--VSVSWNN--GVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred EEecCCcccccCCCCC----Cceee--EEEEcCC--EEEEEeccCCCCCEeeeEEEEEe
Confidence 9999999999987743 33332 3334444 8999999873 46788887653
No 14
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=271.46 Aligned_cols=247 Identities=23% Similarity=0.397 Sum_probs=212.0
Q ss_pred CCCCccccceEEEE--CCEEEEEcCC--CC--CccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceee
Q 010571 23 ARPSPRYKHAAAVF--DQKLYIVGGS--RN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCM 96 (507)
Q Consensus 23 ~~p~~r~~~~~~~~--~~~lyv~GG~--~~--~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 96 (507)
+.|.||...+++.. .+.|++|||. ++ ....+++|.||..+++|+.+.. +++|+||+.|.+
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s--------------pn~P~pRsshq~ 127 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS--------------PNAPPPRSSHQA 127 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc--------------CCCcCCCcccee
Confidence 56889999988776 4689999993 22 3456899999999999999876 366889999999
Q ss_pred EEEC-CEEEEEcccCCCCC-----CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCC---CCcc
Q 010571 97 VKWG-TKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS---RKLL 167 (507)
Q Consensus 97 ~~~~-~~iyv~GG~~~~~~-----~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~---~~~~ 167 (507)
|++- |.+|||||.....+ .+.++|+||+.+++|+++...| .|.+|++|.+++..++|++|||+.+. ..+.
T Consensus 128 va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~Yy 206 (521)
T KOG1230|consen 128 VAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYY 206 (521)
T ss_pred EEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEe
Confidence 9985 89999999754432 4679999999999999998765 89999999999999999999998443 3479
Q ss_pred CcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC---------CCcCCCcEEEEECCC-----CcEEe
Q 010571 168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQT-----NEWSQ 233 (507)
Q Consensus 168 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~---------~~~~~~~i~~~d~~~-----~~W~~ 233 (507)
||+|+||++|.+|+.+.+.|..|.||++|.+.+..++.|||.||++ .+..++|+|.+++.. -.|..
T Consensus 207 NDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~k 286 (521)
T KOG1230|consen 207 NDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTK 286 (521)
T ss_pred eeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEee
Confidence 9999999999999999998888999999999999777799999985 346788999999988 57999
Q ss_pred eeecCCCCCCCcceEEEEE-CCEEEEEeccCCC---------CCcceEEEEEcCcCeeEEe
Q 010571 234 PEIKGDLVTGRAGHAGITI-DENWYIVGGGDNN---------NGCQETIVLNMTKLAWSIL 284 (507)
Q Consensus 234 ~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~---------~~~~d~~~~d~~~~~W~~~ 284 (507)
+...+..|.||+++++++. +++.+.|||...- ..+||+|.||+..++|+..
T Consensus 287 vkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 287 VKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 9988999999999999888 4589999997441 1268999999999999975
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=5.3e-34 Score=277.88 Aligned_cols=263 Identities=18% Similarity=0.229 Sum_probs=198.5
Q ss_pred CccccceEEEECCEEEEEcCCCCC----------ccCCceEEEECCC--CceeEeeeccccccCccccCCccCCCCCccc
Q 010571 26 SPRYKHAAAVFDQKLYIVGGSRNG----------RFLSDVQVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSD 93 (507)
Q Consensus 26 ~~r~~~~~~~~~~~lyv~GG~~~~----------~~~~~~~~~d~~t--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 93 (507)
..+.++.++++++.|||+||.+.. ...+++++|+... .+|..++.+ |.+|..
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l----------------p~~r~~ 65 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL----------------PYEAAY 65 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC----------------Cccccc
Confidence 457889999999999999997543 2446788886333 368887755 447888
Q ss_pred eeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEE-EeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEE
Q 010571 94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF 172 (507)
Q Consensus 94 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~ 172 (507)
+++++++++||++||...... .++++.||+.+++|. ......++|.+|..+++++++++||++||.... ...+++++
T Consensus 66 ~~~~~~~~~lyviGG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~ 143 (323)
T TIGR03548 66 GASVSVENGIYYIGGSNSSER-FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYL 143 (323)
T ss_pred eEEEEECCEEEEEcCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEE
Confidence 888999999999999875443 678999999999983 112223899999999999999999999998543 34789999
Q ss_pred EEcCCCcEEEeecCCCCC-CCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecC--CCCCCCcceEE
Q 010571 173 LDLETMTWDAVEVTQTPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG--DLVTGRAGHAG 249 (507)
Q Consensus 173 ~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~--~~p~~r~~~~~ 249 (507)
||+.+++|+.++ ++| .+|..|+++++ +++||||||.+.. ..+++++||+.+++|+.+.... ..|.++..+++
T Consensus 144 yd~~~~~W~~~~---~~p~~~r~~~~~~~~-~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~ 218 (323)
T TIGR03548 144 FNLETQEWFELP---DFPGEPRVQPVCVKL-QNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS 218 (323)
T ss_pred EcCCCCCeeECC---CCCCCCCCcceEEEE-CCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeE
Confidence 999999999987 344 36888877777 5569999998643 3467899999999999975322 23444445555
Q ss_pred EEE-CCEEEEEeccCCCC--------------------------------CcceEEEEEcCcCeeEEeccCCCCCCCCCC
Q 010571 250 ITI-DENWYIVGGGDNNN--------------------------------GCQETIVLNMTKLAWSILTSVKGRNPLASE 296 (507)
Q Consensus 250 ~~~-~~~l~v~GG~~~~~--------------------------------~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~ 296 (507)
+++ +++|||+||.+... ..+++++||+.+++|+.++.++. .+|.
T Consensus 219 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~~r~ 295 (323)
T TIGR03548 219 IKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF---FARC 295 (323)
T ss_pred EEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc---cccC
Confidence 544 68999999976321 12579999999999999886542 2455
Q ss_pred CCceEEEEEcCceEEEEEcccC
Q 010571 297 GLSVCSAIIEGEHHLVAFGGYN 318 (507)
Q Consensus 297 ~~~~~~~~~~~~~~l~v~GG~~ 318 (507)
+++++ .+++ .||++||..
T Consensus 296 ~~~~~--~~~~--~iyv~GG~~ 313 (323)
T TIGR03548 296 GAALL--LTGN--NIFSINGEL 313 (323)
T ss_pred chheE--EECC--EEEEEeccc
Confidence 55443 4444 799999975
No 16
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5.4e-35 Score=275.40 Aligned_cols=301 Identities=26% Similarity=0.453 Sum_probs=246.6
Q ss_pred CCCeEEecc-CCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCC
Q 010571 12 YDLWVTLPV-SGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPP 90 (507)
Q Consensus 12 ~~~W~~~~~-~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (507)
--+|.++.. .|+.|.||.||-++++...|.+|||-+.+ ..+.+.+||..+++|..-..-+ ..|++
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-iiDELHvYNTatnqWf~PavrG-------------DiPpg 81 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-IIDELHVYNTATNQWFAPAVRG-------------DIPPG 81 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCccc-chhhhhhhccccceeecchhcC-------------CCCCc
Confidence 447887755 67889999999999999999999996655 4678999999999998766654 56899
Q ss_pred ccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeec----CCCCCCCcccceEEEECCEEEEEcCcCCC---
Q 010571 91 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET----SGKVPVARGGHSVTLVGSRLIIFGGEDRS--- 163 (507)
Q Consensus 91 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~----~g~~p~~r~~~~~~~~~~~l~~~GG~~~~--- 163 (507)
.+.|.++..+.+||+|||+..-..+.|++|.+-...-.|+.+.+ .|.+|.+|-+|+...++++.|+|||...+
T Consensus 82 cAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseD 161 (830)
T KOG4152|consen 82 CAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED 161 (830)
T ss_pred hhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccC
Confidence 99999999999999999999888889998888777778887754 57899999999999999999999997322
Q ss_pred -----CCccCcEEEEEcCCC----cEEEeecCCCCCCCCCCceEEEEc-----CcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571 164 -----RKLLNDVHFLDLETM----TWDAVEVTQTPPAPRYDHSAALHA-----NRYLIVFGGCSHSIFFNDLHVLDLQTN 229 (507)
Q Consensus 164 -----~~~~~~~~~~d~~t~----~W~~~~~~g~~p~~r~~~~~~~~~-----~~~l~i~GG~~~~~~~~~i~~~d~~~~ 229 (507)
..++||+|.+++.-+ .|..+...|..|.+|..|+++++. ..++|||||..+ ..+.|+|.+|+.+.
T Consensus 162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl 240 (830)
T KOG4152|consen 162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTL 240 (830)
T ss_pred cccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEeccee
Confidence 247899999998743 599999999999999999999982 246999999865 56799999999999
Q ss_pred cEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC------C--------CcceEEEEEcCcCeeEEecc--CCC-CCC
Q 010571 230 EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN------N--------GCQETIVLNMTKLAWSILTS--VKG-RNP 292 (507)
Q Consensus 230 ~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~------~--------~~~d~~~~d~~~~~W~~~~~--~~~-~~p 292 (507)
+|.+++..|..|.||+-|++..|+++||||||+-.. . ..+.+-.+|+.+..|..+-. ... .+|
T Consensus 241 ~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiP 320 (830)
T KOG4152|consen 241 TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIP 320 (830)
T ss_pred ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccc
Confidence 999999999999999999999999999999997311 0 13456688999999998632 122 246
Q ss_pred CCCCCCceEEEEEcCceEEEEEcccCCC--------cCCeEEEEECC
Q 010571 293 LASEGLSVCSAIIEGEHHLVAFGGYNGK--------YNNEVFVMRLK 331 (507)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~v~~~~~~ 331 (507)
++|.||..++ +. .+||+..|.++. ...|+|.+|..
T Consensus 321 R~RAGHCAvA--ig--tRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 321 RARAGHCAVA--IG--TRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred cccccceeEE--ec--cEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 6666665444 44 489999998753 35677777753
No 17
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=292.65 Aligned_cols=252 Identities=31% Similarity=0.526 Sum_probs=224.0
Q ss_pred cCCCCCccceeeEEECCEEEEEcccCCCCCCcc-eEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCC
Q 010571 85 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM-IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS 163 (507)
Q Consensus 85 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~ 163 (507)
...|.+|.+|+++.+++++|||||......... ++++||..+..|.....+|..|.+|.+|+++.++++||+|||.+..
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 356789999999999999999999887766333 6999999999999999999999999999999999999999999865
Q ss_pred CCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc-CCCcEEEEECCCCcEEeeeecCCCCC
Q 010571 164 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVT 242 (507)
Q Consensus 164 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~ 242 (507)
....+++++||+.|.+|..+.+.+.+|++|.+|++++++ +++|||||.+... .+|++|+||+.+.+|.++.+.++.|.
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~ 213 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS 213 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence 556899999999999999999999999999999999996 6799999998776 89999999999999999999999999
Q ss_pred CCcceEEEEECCEEEEEeccC-CCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC-
Q 010571 243 GRAGHAGITIDENWYIVGGGD-NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK- 320 (507)
Q Consensus 243 ~r~~~~~~~~~~~l~v~GG~~-~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~- 320 (507)
||.+|++++++++++||||.+ ++..++|+|.||+.+..|..+ ...+..|.+|.+|+.+.. +..++++||....
T Consensus 214 pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~-~~~g~~p~~R~~h~~~~~----~~~~~l~gG~~~~~ 288 (482)
T KOG0379|consen 214 PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL-PTGGDLPSPRSGHSLTVS----GDHLLLFGGGTDPK 288 (482)
T ss_pred CCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeec-cccCCCCCCcceeeeEEE----CCEEEEEcCCcccc
Confidence 999999999999999999988 666789999999999999954 445566888888876632 4478888988763
Q ss_pred --cCCeEEEEECCCCCCCCCcccC
Q 010571 321 --YNNEVFVMRLKPRDIPRPKIFQ 342 (507)
Q Consensus 321 --~~~~v~~~~~~~~~w~~~~~~~ 342 (507)
...++|.|++.+..|.......
T Consensus 289 ~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 289 QEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccccccccceeeeeccc
Confidence 6899999999999999877655
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=6.1e-34 Score=282.36 Aligned_cols=284 Identities=18% Similarity=0.222 Sum_probs=211.9
Q ss_pred CeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECC--CCceeEeeeccccccCccccCCccCCCCCc
Q 010571 14 LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPM 91 (507)
Q Consensus 14 ~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~--t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r 91 (507)
.++.++ ++|.||..+++++++++|||+||... +.+++||+. ++.|..++.++. .+|
T Consensus 18 ~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~---------------~~r 75 (376)
T PRK14131 18 NAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPG---------------GPR 75 (376)
T ss_pred ecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCC---------------CCc
Confidence 356677 78999998899999999999999643 458899986 478998876542 379
Q ss_pred cceeeEEECCEEEEEcccCCC-----CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEE-ECCEEEEEcCcCCCC-
Q 010571 92 SDHCMVKWGTKLLILGGHYKK-----SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSR- 164 (507)
Q Consensus 92 ~~~~~~~~~~~iyv~GG~~~~-----~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~l~~~GG~~~~~- 164 (507)
.+|++++++++||++||.... ....+++++||+.+++|..++. .+|.++.+|++++ .+++||++||.+...
T Consensus 76 ~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~ 153 (376)
T PRK14131 76 EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIF 153 (376)
T ss_pred ccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHH
Confidence 999999999999999998641 1235789999999999999873 3577778888777 799999999975310
Q ss_pred --------------------------------CccCcEEEEEcCCCcEEEeecCCCCCC-CCCCceEEEEcCcEEEEEeC
Q 010571 165 --------------------------------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGG 211 (507)
Q Consensus 165 --------------------------------~~~~~~~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~l~i~GG 211 (507)
...+++++||+.+++|+.+. ++|. +|..|+++.+ +++|||+||
T Consensus 154 ~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~-~~~iYv~GG 229 (376)
T PRK14131 154 DGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIK-GNKLWLING 229 (376)
T ss_pred HHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEE-CCEEEEEee
Confidence 12478999999999999876 5664 6777777776 566999999
Q ss_pred CCCC-cCCCcEEE--EECCCCcEEeeeecCCCCCCCc--------ceEEEEECCEEEEEeccCCCC--------------
Q 010571 212 CSHS-IFFNDLHV--LDLQTNEWSQPEIKGDLVTGRA--------GHAGITIDENWYIVGGGDNNN-------------- 266 (507)
Q Consensus 212 ~~~~-~~~~~i~~--~d~~~~~W~~~~~~~~~p~~r~--------~~~~~~~~~~l~v~GG~~~~~-------------- 266 (507)
.... ...++++. ||+.+++|..+ .++|.+|. .+.+++++++|||+||.+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~W~~~---~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 306 (376)
T PRK14131 230 EIKPGLRTDAVKQGKFTGNNLKWQKL---PDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHE 306 (376)
T ss_pred eECCCcCChhheEEEecCCCcceeec---CCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCccccc
Confidence 7433 33455554 56788999987 45665553 233567899999999965321
Q ss_pred Cc---ceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC--CcCCeEEEEECCCCCCC
Q 010571 267 GC---QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKPRDIP 336 (507)
Q Consensus 267 ~~---~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~v~~~~~~~~~w~ 336 (507)
.. ..+.+||+.+++|+.++.+|. ++.++ .++++++ .|||+||... ...++|++|++..+.+.
T Consensus 307 ~~~~~~~~e~yd~~~~~W~~~~~lp~----~r~~~--~av~~~~--~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 307 GLKKSWSDEIYALVNGKWQKVGELPQ----GLAYG--VSVSWNN--GVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred CCcceeehheEEecCCcccccCcCCC----Cccce--EEEEeCC--EEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 11 246789999999999887743 44444 3344554 7999999753 46889999998765443
No 19
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=5.5e-34 Score=297.12 Aligned_cols=267 Identities=21% Similarity=0.243 Sum_probs=215.8
Q ss_pred CEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcc
Q 010571 38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM 117 (507)
Q Consensus 38 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 117 (507)
..+++.||.. .....+..|++.+.+|..++..+ .+..|++++++++||++||........+
T Consensus 251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 311 (534)
T PHA03098 251 SIIYIHITMS--IFTYNYITNYSPLSEINTIIDIH-----------------YVYCFGSVVLNNVIYFIGGMNKNNLSVN 311 (534)
T ss_pred cceEeecccc--hhhceeeecchhhhhcccccCcc-----------------ccccceEEEECCEEEEECCCcCCCCeec
Confidence 4455656644 22345667888888998876432 3455789999999999999976655567
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCce
Q 010571 118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 197 (507)
Q Consensus 118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~ 197 (507)
+++.||+.+++|..++ +||.+|.+++++.++++||++||.+.. ...+++++||+.+++|+.++ ++|.+|.+|+
T Consensus 312 ~v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~ 384 (534)
T PHA03098 312 SVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPC 384 (534)
T ss_pred cEEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccce
Confidence 8999999999999887 889999999999999999999998743 35789999999999999886 6788999999
Q ss_pred EEEEcCcEEEEEeCCCC-CcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCC---cceEEE
Q 010571 198 AALHANRYLIVFGGCSH-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG---CQETIV 273 (507)
Q Consensus 198 ~~~~~~~~l~i~GG~~~-~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~---~~d~~~ 273 (507)
++.+ +++||++||... ...++++++||+.+++|+.+ .++|.+|.+|++++++++|||+||.+.... .+.+++
T Consensus 385 ~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 385 VVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG---SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred EEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeec---CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence 9887 556999999753 34578999999999999986 568899999999999999999999764432 567999
Q ss_pred EEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC-cCCeEEEEECCCCCCCCCcccC
Q 010571 274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQ 342 (507)
Q Consensus 274 ~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~~~~~~~w~~~~~~~ 342 (507)
||+.+++|+.++.++ .++.+++++ +++ +.|||+||.++. ..++++.||+.++.|...+.+|
T Consensus 461 yd~~~~~W~~~~~~~----~~r~~~~~~--~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 461 YNPVTNKWTELSSLN----FPRINASLC--IFN--NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred ecCCCCceeeCCCCC----cccccceEE--EEC--CEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence 999999999988763 345455443 343 479999998754 3789999999999998776543
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.1e-33 Score=273.67 Aligned_cols=234 Identities=17% Similarity=0.241 Sum_probs=189.2
Q ss_pred CCCeEeeCCC--CCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCce----eEeeecccccc
Q 010571 3 SGSWHLELPY--DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAW----SNLRLETELDA 76 (507)
Q Consensus 3 ~~~~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W----~~~~~~~~~~~ 76 (507)
+++|.|+... ..|..++ .+|.||..++++++++.||++||..+...++++++||+.+.+| ..++
T Consensus 39 ~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~------- 108 (323)
T TIGR03548 39 KGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG------- 108 (323)
T ss_pred eeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-------
Confidence 3678785332 2799888 7899999888899999999999988777788999999999998 3333
Q ss_pred CccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC-CCcccceEEEECCEEE
Q 010571 77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP-VARGGHSVTLVGSRLI 155 (507)
Q Consensus 77 ~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~l~ 155 (507)
+.|.+|..|++++++++||++||..... ..+++++||+.+++|+.++ ++| .+|..++++.++++||
T Consensus 109 ---------~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iY 175 (323)
T TIGR03548 109 ---------NLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELP---DFPGEPRVQPVCVKLQNELY 175 (323)
T ss_pred ---------CCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECC---CCCCCCCCcceEEEECCEEE
Confidence 3356889999999999999999975433 3688999999999999987 676 4788888999999999
Q ss_pred EEcCcCCCCCccCcEEEEEcCCCcEEEeecCC--CCCCCCCCceEEEEcCcEEEEEeCCCCCc-----------------
Q 010571 156 IFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ--TPPAPRYDHSAALHANRYLIVFGGCSHSI----------------- 216 (507)
Q Consensus 156 ~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~~l~i~GG~~~~~----------------- 216 (507)
++||.+.. ..+++++||+.+++|+.+.+.. ..|..+..++++++.+++|||+||.+...
T Consensus 176 v~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 253 (323)
T TIGR03548 176 VFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLK 253 (323)
T ss_pred EEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhh
Confidence 99998643 2467899999999999987542 23444555666667678899999986421
Q ss_pred ---------------CCCcEEEEECCCCcEEeeeecCCCC-CCCcceEEEEECCEEEEEeccCC
Q 010571 217 ---------------FFNDLHVLDLQTNEWSQPEIKGDLV-TGRAGHAGITIDENWYIVGGGDN 264 (507)
Q Consensus 217 ---------------~~~~i~~~d~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~l~v~GG~~~ 264 (507)
..+++++||+.+++|+.+ +++| .+|.++++++++++||++||...
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 254 GYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSI---GNSPFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred hhHHHHhCCCccccCcCceEEEEECCCCeeeEc---ccccccccCchheEEECCEEEEEecccc
Confidence 246799999999999997 3455 58999999999999999999643
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.9e-32 Score=269.87 Aligned_cols=245 Identities=22% Similarity=0.369 Sum_probs=190.7
Q ss_pred CCCeEeeC--CCCCeEEeccCCCCC-CccccceEEEECCEEEEEcCCCCC------ccCCceEEEECCCCceeEeeeccc
Q 010571 3 SGSWHLEL--PYDLWVTLPVSGARP-SPRYKHAAAVFDQKLYIVGGSRNG------RFLSDVQVFDLRSLAWSNLRLETE 73 (507)
Q Consensus 3 ~~~~~~d~--~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~~d~~t~~W~~~~~~~~ 73 (507)
++.|.||+ ..+.|..++ ++| .+|..|+++++++.||++||.... ..++++++||+.+++|+.++..
T Consensus 29 ~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~-- 103 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR-- 103 (346)
T ss_pred CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC--
Confidence 46789996 678999998 688 589999999999999999997532 2467899999999999998732
Q ss_pred cccCccccCCccCCCCCccceeeE-EECCEEEEEcccCCCC---------------------------------CCcceE
Q 010571 74 LDADKTEDSGLLEVLPPMSDHCMV-KWGTKLLILGGHYKKS---------------------------------SDSMIV 119 (507)
Q Consensus 74 ~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~---------------------------------~~~~~~ 119 (507)
.|.+|.+|+++ +.+++||++||..... ...+++
T Consensus 104 -------------~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (346)
T TIGR03547 104 -------------SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV 170 (346)
T ss_pred -------------CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Confidence 13467778777 6899999999976321 013689
Q ss_pred EEEECCCCcEEEeecCCCCCC-CcccceEEEECCEEEEEcCcCCCCCccCcEEEEEc--CCCcEEEeecCCCCCCCC---
Q 010571 120 RFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL--ETMTWDAVEVTQTPPAPR--- 193 (507)
Q Consensus 120 ~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~--~t~~W~~~~~~g~~p~~r--- 193 (507)
++||+.+++|+.+. +||. +|.+++++.++++||++||.........+++.|++ .+++|+.+. ++|.+|
T Consensus 171 ~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~---~m~~~r~~~ 244 (346)
T TIGR03547 171 LSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP---PLPPPKSSS 244 (346)
T ss_pred EEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC---CCCCCCCCc
Confidence 99999999999997 7885 68889999999999999998654433456766654 677999987 445444
Q ss_pred ----CCceEEEEcCcEEEEEeCCCCCc-----------------CCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE
Q 010571 194 ----YDHSAALHANRYLIVFGGCSHSI-----------------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 252 (507)
Q Consensus 194 ----~~~~~~~~~~~~l~i~GG~~~~~-----------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 252 (507)
.+|+++++ +++|||+||..... .++.+.+||+.+++|+.+ +++|.+|..++++++
T Consensus 245 ~~~~~~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~~~~~~~~~~ 320 (346)
T TIGR03547 245 QEGLAGAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV---GKLPQGLAYGVSVSW 320 (346)
T ss_pred cccccEEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc---CCCCCCceeeEEEEc
Confidence 34445566 56699999975211 124688999999999986 678999999998899
Q ss_pred CCEEEEEeccCCC-CCcceEEEEE
Q 010571 253 DENWYIVGGGDNN-NGCQETIVLN 275 (507)
Q Consensus 253 ~~~l~v~GG~~~~-~~~~d~~~~d 275 (507)
+++|||+||.+.. ...++++.|.
T Consensus 321 ~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 321 NNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred CCEEEEEeccCCCCCEeeeEEEEE
Confidence 9999999998654 3466777664
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.8e-32 Score=271.84 Aligned_cols=253 Identities=22% Similarity=0.355 Sum_probs=196.2
Q ss_pred CCCeEeeCC--CCCeEEeccCCCCC-CccccceEEEECCEEEEEcCCCC------CccCCceEEEECCCCceeEeeeccc
Q 010571 3 SGSWHLELP--YDLWVTLPVSGARP-SPRYKHAAAVFDQKLYIVGGSRN------GRFLSDVQVFDLRSLAWSNLRLETE 73 (507)
Q Consensus 3 ~~~~~~d~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~------~~~~~~~~~~d~~t~~W~~~~~~~~ 73 (507)
+..|.||+. .+.|..++ ++| .+|.+|+++++++.||++||... ...++++++||+.+++|..++...
T Consensus 50 ~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~- 125 (376)
T PRK14131 50 TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS- 125 (376)
T ss_pred CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC-
Confidence 446899986 47899998 566 58999999999999999999764 134688999999999999987421
Q ss_pred cccCccccCCccCCCCCccceeeEE-ECCEEEEEcccCCCC---------------------------------CCcceE
Q 010571 74 LDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKS---------------------------------SDSMIV 119 (507)
Q Consensus 74 ~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~---------------------------------~~~~~~ 119 (507)
|.++.+|++++ .+++||++||..... ...+++
T Consensus 126 --------------p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v 191 (376)
T PRK14131 126 --------------PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV 191 (376)
T ss_pred --------------CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE
Confidence 34677888777 799999999975320 024689
Q ss_pred EEEECCCCcEEEeecCCCCCC-CcccceEEEECCEEEEEcCcCCCCCccCcEEE--EEcCCCcEEEeecCCCCCCCCCCc
Q 010571 120 RFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF--LDLETMTWDAVEVTQTPPAPRYDH 196 (507)
Q Consensus 120 ~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~--~d~~t~~W~~~~~~g~~p~~r~~~ 196 (507)
++||+.+++|..+. ++|. +|.+++++.++++||++||....+....+++. ||+.+.+|..+. ++|.+|.++
T Consensus 192 ~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~ 265 (376)
T PRK14131 192 LSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGS 265 (376)
T ss_pred EEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC---CCCCCCcCC
Confidence 99999999999986 7785 78888999999999999998654434555554 566889999987 455555321
Q ss_pred -------e-EEEEcCcEEEEEeCCCCCc-----------------CCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEE
Q 010571 197 -------S-AALHANRYLIVFGGCSHSI-----------------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251 (507)
Q Consensus 197 -------~-~~~~~~~~l~i~GG~~~~~-----------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~ 251 (507)
. ++++ +++|||+||.+... ....+.+||+.+++|+.+ +.+|.+|..|++++
T Consensus 266 ~~~~~~~~~a~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~r~~~~av~ 341 (376)
T PRK14131 266 SQEGVAGAFAGYS-NGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV---GELPQGLAYGVSVS 341 (376)
T ss_pred cCCccceEeceeE-CCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc---CcCCCCccceEEEE
Confidence 2 3444 66799999975321 112467899999999986 67899999999999
Q ss_pred ECCEEEEEeccCCC-CCcceEEEEEcCcCeeEE
Q 010571 252 IDENWYIVGGGDNN-NGCQETIVLNMTKLAWSI 283 (507)
Q Consensus 252 ~~~~l~v~GG~~~~-~~~~d~~~~d~~~~~W~~ 283 (507)
+++.|||+||.... ...++++.|++..+.+..
T Consensus 342 ~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 342 WNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred eCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 99999999997543 457899999988877653
No 23
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=6.6e-32 Score=275.24 Aligned_cols=211 Identities=18% Similarity=0.249 Sum_probs=184.8
Q ss_pred EEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCC
Q 010571 33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK 112 (507)
Q Consensus 33 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 112 (507)
++.+++.||++||.......+.++.|||.+++|..+++++. +|..+++++++++||++||....
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~----------------~r~~~~~v~~~~~iYviGG~~~~ 330 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS----------------PRLYASGVPANNKLYVVGGLPNP 330 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc----------------hhhcceEEEECCEEEEECCcCCC
Confidence 34589999999998766677889999999999999987753 89999999999999999997532
Q ss_pred CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571 113 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 192 (507)
Q Consensus 113 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~ 192 (507)
++++.||+.+++|..++ +||.+|.++++++++++||++||.+.. .+.+.+||+.+++|+.++ ++|.+
T Consensus 331 ----~sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~ 397 (480)
T PHA02790 331 ----TSVERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYP 397 (480)
T ss_pred ----CceEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCc
Confidence 45899999999999998 899999999999999999999998643 367999999999999987 67889
Q ss_pred CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEE
Q 010571 193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI 272 (507)
Q Consensus 193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~ 272 (507)
|..|+++++ +++||++||. +.+||+.+++|+.+ +++|.+|..+++++++++||++||.++....+.++
T Consensus 398 r~~~~~~~~-~~~IYv~GG~--------~e~ydp~~~~W~~~---~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve 465 (480)
T PHA02790 398 HYKSCALVF-GRRLFLVGRN--------AEFYCESSNTWTLI---DDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIE 465 (480)
T ss_pred cccceEEEE-CCEEEEECCc--------eEEecCCCCcEeEc---CCCCCCccccEEEEECCEEEEECCcCCCcccceEE
Confidence 999988887 5569999983 57899999999986 57889999999999999999999987555567899
Q ss_pred EEEcCcCeeEEe
Q 010571 273 VLNMTKLAWSIL 284 (507)
Q Consensus 273 ~~d~~~~~W~~~ 284 (507)
+||+.+++|+..
T Consensus 466 ~Yd~~~~~W~~~ 477 (480)
T PHA02790 466 VYNNRTYSWNIW 477 (480)
T ss_pred EEECCCCeEEec
Confidence 999999999854
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=253.67 Aligned_cols=217 Identities=28% Similarity=0.510 Sum_probs=191.2
Q ss_pred CCCeEeeCCCCCeEEeccCCCCCCccccceEEEEC-CEEEEEcCCCC------CccCCceEEEECCCCceeEeeeccccc
Q 010571 3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFD-QKLYIVGGSRN------GRFLSDVQVFDLRSLAWSNLRLETELD 75 (507)
Q Consensus 3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~------~~~~~~~~~~d~~t~~W~~~~~~~~~~ 75 (507)
+|.|.||+..+.|+.+..+ ..|+||.+|.+|++. +.+|||||... ....+++|+||+.+.+|+++...+
T Consensus 98 ndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g--- 173 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG--- 173 (521)
T ss_pred eeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC---
Confidence 7899999999999988743 478999999999995 89999999432 234568999999999999998754
Q ss_pred cCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCC---CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-C
Q 010571 76 ADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS---DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G 151 (507)
Q Consensus 76 ~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~ 151 (507)
.|.+|.+|-+++..++|++|||...... ++|++|+||+.|.+|.++.+.|..|.||+++++++. .
T Consensus 174 -----------~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpq 242 (521)
T KOG1230|consen 174 -----------GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQ 242 (521)
T ss_pred -----------CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCC
Confidence 4889999999999999999999855433 789999999999999999998889999999999888 8
Q ss_pred CEEEEEcCcCC--------CCCccCcEEEEEcCC-----CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCC----
Q 010571 152 SRLIIFGGEDR--------SRKLLNDVHFLDLET-----MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH---- 214 (507)
Q Consensus 152 ~~l~~~GG~~~--------~~~~~~~~~~~d~~t-----~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~---- 214 (507)
+.||++||+.. .+..++|++.+++.+ ..|..+.+.|-.|.||+++++++..+++.+.|||..+
T Consensus 243 g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eee 322 (521)
T KOG1230|consen 243 GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEE 322 (521)
T ss_pred CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceeccccc
Confidence 99999999852 355789999999988 7899999999999999999999999988999999853
Q ss_pred -----CcCCCcEEEEECCCCcEEee
Q 010571 215 -----SIFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 215 -----~~~~~~i~~~d~~~~~W~~~ 234 (507)
+.+.||+|.||+..+.|...
T Consensus 323 eEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 323 EESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred chhhhhhhhhhhhheecccchhhHh
Confidence 36789999999999999874
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=1.6e-29 Score=257.73 Aligned_cols=191 Identities=19% Similarity=0.370 Sum_probs=169.6
Q ss_pred CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571 3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 82 (507)
Q Consensus 3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~ 82 (507)
+.+|+|||.++.|..++ ++|.+|..++++++++.||++||..+ .+.++.||+.+++|..+++++
T Consensus 287 ~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~---------- 350 (480)
T PHA02790 287 NNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLL---------- 350 (480)
T ss_pred CeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCC----------
Confidence 45899999999999999 79999999999999999999999753 256999999999999988765
Q ss_pred CccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCC
Q 010571 83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR 162 (507)
Q Consensus 83 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~ 162 (507)
.+|.+|++++++++||++||.... .+.+++|||.+++|+.++ +||.+|.++++++++++||++||.
T Consensus 351 ------~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~IYv~GG~-- 416 (480)
T PHA02790 351 ------KPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRRLFLVGRN-- 416 (480)
T ss_pred ------CCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCEEEEECCc--
Confidence 389999999999999999997543 356899999999999988 899999999999999999999983
Q ss_pred CCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571 163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 163 ~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~ 234 (507)
+.+||+.+++|+.++ ++|.+|..++++++ +++||++||.++....+.+++||+.+++|+..
T Consensus 417 -------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 -------AEFYCESSNTWTLID---DPIYPRDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred -------eEEecCCCCcEeEcC---CCCCCccccEEEEE-CCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 678999999999987 67889999999988 45699999987666678899999999999875
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.8e-29 Score=238.25 Aligned_cols=262 Identities=24% Similarity=0.397 Sum_probs=220.3
Q ss_pred CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCC-CccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571 3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTED 81 (507)
Q Consensus 3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~ 81 (507)
+..-.||..+++|.....-|++|++-.-|+.+-.|..||+|||+-. +.++|++|.+-.....|+++.+...
T Consensus 57 DELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p-------- 128 (830)
T KOG4152|consen 57 DELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTP-------- 128 (830)
T ss_pred hhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCC--------
Confidence 3455799999999999999999999999999999999999999765 6788998888777788888876542
Q ss_pred CCccCCCCCccceeeEEECCEEEEEcccCCCCC--------CcceEEEEECCCC----cEEEeecCCCCCCCcccceEEE
Q 010571 82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS--------DSMIVRFIDLETN----LCGVMETSGKVPVARGGHSVTL 149 (507)
Q Consensus 82 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~d~~t~----~W~~~~~~g~~p~~r~~~~~~~ 149 (507)
....+|-||.+|+...++++.|+|||...+.. +++++|++++.-+ -|....+.|..|.+|..|.++.
T Consensus 129 -~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAVi 207 (830)
T KOG4152|consen 129 -KNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVI 207 (830)
T ss_pred -CCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEE
Confidence 23577889999999999999999999754422 6889999998754 5999999999999999999988
Q ss_pred E------CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC----------
Q 010571 150 V------GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS---------- 213 (507)
Q Consensus 150 ~------~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~---------- 213 (507)
+ ..++|+|||+++ +.+.|+|.+|++|..|.+++..|-.|.||+-|+++.++|. +|||||.-
T Consensus 208 Y~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnK-MyvfGGWVPl~~~~~~~~ 284 (830)
T KOG4152|consen 208 YTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNK-MYVFGGWVPLVMDDVKVA 284 (830)
T ss_pred EEeccCCcceEEEEccccc--ccccceeEEecceeecccccccCCCCCCcccccceeecce-eEEecceeeeeccccccc
Confidence 7 238999999865 4589999999999999999999999999999999999665 99999962
Q ss_pred ----CCcCCCcEEEEECCCCcEEeeee----cCCCCCCCcceEEEEECCEEEEEeccCCC-------CCcceEEEEEc
Q 010571 214 ----HSIFFNDLHVLDLQTNEWSQPEI----KGDLVTGRAGHAGITIDENWYIVGGGDNN-------NGCQETIVLNM 276 (507)
Q Consensus 214 ----~~~~~~~i~~~d~~~~~W~~~~~----~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-------~~~~d~~~~d~ 276 (507)
.-.+++.+-++|+.++.|..+.. ....|.+|.+|+++.++.+|||-.|.++. -...|+|.+|.
T Consensus 285 ~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 285 THEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred cccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 11467889999999999998632 13378899999999999999999997543 23567888874
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.82 E-value=1.2e-18 Score=159.69 Aligned_cols=247 Identities=20% Similarity=0.345 Sum_probs=184.4
Q ss_pred CCCeEeeCC--CCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCC-----CccCCceEEEECCCCceeEeeeccccc
Q 010571 3 SGSWHLELP--YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN-----GRFLSDVQVFDLRSLAWSNLRLETELD 75 (507)
Q Consensus 3 ~~~~~~d~~--~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-----~~~~~~~~~~d~~t~~W~~~~~~~~~~ 75 (507)
...|.+|+. ...|+++.. .+-.+|-+..+++++++||+|||... .+..+++|+|||.+++|.++.+..
T Consensus 58 ~afy~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s--- 132 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS--- 132 (381)
T ss_pred ccceehhhhcCCCCceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc---
Confidence 345678877 579999984 44467999999999999999999643 356789999999999999998754
Q ss_pred cCccccCCccCCCCCccceeeEEECC-EEEEEcccCCC---------------------------------CCCcceEEE
Q 010571 76 ADKTEDSGLLEVLPPMSDHCMVKWGT-KLLILGGHYKK---------------------------------SSDSMIVRF 121 (507)
Q Consensus 76 ~~~~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~---------------------------------~~~~~~~~~ 121 (507)
|....+++++..++ +||++||.+.. ......+..
T Consensus 133 ------------P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~s 200 (381)
T COG3055 133 ------------PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLS 200 (381)
T ss_pred ------------ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccc
Confidence 55788999999987 99999998321 113567999
Q ss_pred EECCCCcEEEeecCCCCC-CCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcC--CCcEEEeecCCCCCCCCCCc--
Q 010571 122 IDLETNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE--TMTWDAVEVTQTPPAPRYDH-- 196 (507)
Q Consensus 122 ~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~g~~p~~r~~~-- 196 (507)
|+|.++.|+.+- ..| .++++.+.+.-++.+.++-|.-.++-++..+..++.. ..+|..+. ++|.+.+..
T Consensus 201 y~p~~n~W~~~G---~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~e 274 (381)
T COG3055 201 YDPSTNQWRNLG---ENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKE 274 (381)
T ss_pred cccccchhhhcC---cCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc---CCCCCCCCCcc
Confidence 999999999885 455 5566655544567799999987676667778877764 56899886 344443322
Q ss_pred --e--EEEEcCcEEEEEeCCC---------------C----CcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEEC
Q 010571 197 --S--AALHANRYLIVFGGCS---------------H----SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID 253 (507)
Q Consensus 197 --~--~~~~~~~~l~i~GG~~---------------~----~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 253 (507)
+ +.-..++.+++.||.. + ....++||.|| .+.|+.+ +.+|.++++.+++..+
T Consensus 275 GvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~---GeLp~~l~YG~s~~~n 349 (381)
T COG3055 275 GVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV---GELPQGLAYGVSLSYN 349 (381)
T ss_pred ccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee---cccCCCccceEEEecC
Confidence 1 1123456688888864 1 13567899998 8899996 8999999998999999
Q ss_pred CEEEEEeccCCCC-CcceEEEEEcC
Q 010571 254 ENWYIVGGGDNNN-GCQETIVLNMT 277 (507)
Q Consensus 254 ~~l~v~GG~~~~~-~~~d~~~~d~~ 277 (507)
+.+|++||-+..+ ....++.+...
T Consensus 350 n~vl~IGGE~~~Gka~~~v~~l~~~ 374 (381)
T COG3055 350 NKVLLIGGETSGGKATTRVYSLSWD 374 (381)
T ss_pred CcEEEEccccCCCeeeeeEEEEEEc
Confidence 9999999976553 34556655433
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=1.8e-16 Score=145.64 Aligned_cols=273 Identities=18% Similarity=0.235 Sum_probs=193.1
Q ss_pred CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCC--CceeEeeeccccccCccccCCccCCCCCccceeeEEEC
Q 010571 23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG 100 (507)
Q Consensus 23 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~ 100 (507)
.+|.+--.-+.+.+++.+||-=|..+ ...+.+|+.. ..|+++...+.. +|.+..++.++
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~---------------~rnqa~~a~~~ 92 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGG---------------ARNQAVAAVIG 92 (381)
T ss_pred CCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCc---------------ccccchheeeC
Confidence 57777666677888999998655221 3467777764 579999987654 89999999999
Q ss_pred CEEEEEcccCCCCC----CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCC-------------
Q 010571 101 TKLLILGGHYKKSS----DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDR------------- 162 (507)
Q Consensus 101 ~~iyv~GG~~~~~~----~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~------------- 162 (507)
++||+|||...... ..+++|+|||.+++|..+.+ ..|....+++++..++ .||++||.+.
T Consensus 93 ~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a 170 (381)
T COG3055 93 GKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAA 170 (381)
T ss_pred CeEEEeeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhh
Confidence 99999999865544 46889999999999999986 4566788888888888 9999999742
Q ss_pred --------------------CCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC-CCcCCCcE
Q 010571 163 --------------------SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDL 221 (507)
Q Consensus 163 --------------------~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~-~~~~~~~i 221 (507)
+..+...+..|++.+..|+.+-. .+..++++ +++++.++.+.++-|.- ..-++..+
T Consensus 171 ~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~ 247 (381)
T COG3055 171 GKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEV 247 (381)
T ss_pred cccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccC-cceeecCCeEEEEcceecCCccccce
Confidence 11345679999999999998853 23345555 56667777677777754 33455667
Q ss_pred EEEECCC--CcEEeeeecCCCCCCCcc-------eEEEEECCEEEEEeccCC--------------C-----CCcceEEE
Q 010571 222 HVLDLQT--NEWSQPEIKGDLVTGRAG-------HAGITIDENWYIVGGGDN--------------N-----NGCQETIV 273 (507)
Q Consensus 222 ~~~d~~~--~~W~~~~~~~~~p~~r~~-------~~~~~~~~~l~v~GG~~~--------------~-----~~~~d~~~ 273 (507)
+.++... .+|..+ +++|.+... +-+-..++.++|.||.+= + ...+++|+
T Consensus 248 k~~~~~~~~~~w~~l---~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~ 324 (381)
T COG3055 248 KQADFGGDNLKWLKL---SDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYI 324 (381)
T ss_pred eEEEeccCceeeeec---cCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEE
Confidence 7777754 469886 444444322 222234678888888531 1 11357889
Q ss_pred EEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccC--CCcCCeEEEEECCC
Q 010571 274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMRLKP 332 (507)
Q Consensus 274 ~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~v~~~~~~~ 332 (507)
|| .+.|+.+..+|... ...+ .+..++.||++||.+ +...+.|+.+....
T Consensus 325 ~d--~g~Wk~~GeLp~~l-------~YG~-s~~~nn~vl~IGGE~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 325 FD--NGSWKIVGELPQGL-------AYGV-SLSYNNKVLLIGGETSGGKATTRVYSLSWDG 375 (381)
T ss_pred Ec--CCceeeecccCCCc-------cceE-EEecCCcEEEEccccCCCeeeeeEEEEEEcC
Confidence 98 99999998886521 1112 222244799999986 45678888776643
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.71 E-value=9.5e-18 Score=159.13 Aligned_cols=261 Identities=20% Similarity=0.254 Sum_probs=187.0
Q ss_pred CCCeEEeccCC-------CCCCccccceEEEECC--EEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571 12 YDLWVTLPVSG-------ARPSPRYKHAAAVFDQ--KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 82 (507)
Q Consensus 12 ~~~W~~~~~~~-------~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~ 82 (507)
.-.|.+++... ..|..|.||.+|...+ .||++||+++-..+.++|+|+...+.|..+..-.
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t---------- 307 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT---------- 307 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC----------
Confidence 56788777544 5688899999998855 9999999999999999999999999999886543
Q ss_pred CccCCCCCccceeeEEECC--EEEEEcccCCCCC-----CcceEEEEECCCCcEEEeecC---CCCCCCcccceEEEECC
Q 010571 83 GLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETS---GKVPVARGGHSVTLVGS 152 (507)
Q Consensus 83 ~~~~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~-----~~~~~~~~d~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~ 152 (507)
..|..|..|-++..-. +||++|-+-+.+. ..+++|+||..++.|..+.-. ...|.....|.+++.++
T Consensus 308 ---~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~ 384 (723)
T KOG2437|consen 308 ---EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSE 384 (723)
T ss_pred ---CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecC
Confidence 3477899999998754 9999997644322 467899999999999988642 23678889999999988
Q ss_pred E--EEEEcCcC--CCCCccCcEEEEEcCCCcEEEeecCC-------CCCCCCCCceEEEEc-CcEEEEEeCCCCCcCCCc
Q 010571 153 R--LIIFGGED--RSRKLLNDVHFLDLETMTWDAVEVTQ-------TPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFND 220 (507)
Q Consensus 153 ~--l~~~GG~~--~~~~~~~~~~~~d~~t~~W~~~~~~g-------~~p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~ 220 (507)
+ ||||||+. .+......+|+||+....|..+...- .....|.+|+|-.+. +..+|+|||.+...-++-
T Consensus 385 k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L 464 (723)
T KOG2437|consen 385 KHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNL 464 (723)
T ss_pred cceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEee
Confidence 7 99999983 23234678999999999998765321 112357788877664 457899999876666666
Q ss_pred EEEEECCCCcEEeee-----ecCCCCCCCcceEEEEE---CCEEEEEeccCCC------CCcceEEEEEcCcCeeEEecc
Q 010571 221 LHVLDLQTNEWSQPE-----IKGDLVTGRAGHAGITI---DENWYIVGGGDNN------NGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 221 i~~~d~~~~~W~~~~-----~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~------~~~~d~~~~d~~~~~W~~~~~ 286 (507)
...|++...+-..+. .+...|. +....-+.. .+.|.+.-|.... ...+.+|+|++.++.|.+|..
T Consensus 465 ~f~y~I~~E~~~~~s~~~k~dsS~~pS-~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 465 FFSYDIDSEHVDIISDGTKKDSSMVPS-TGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred hhcceeccccchhhhccCcCccccCCC-cchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhh
Confidence 667766543322211 0111121 111111222 3467777776422 235789999999999988743
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.59 E-value=1.4e-15 Score=144.63 Aligned_cols=273 Identities=17% Similarity=0.225 Sum_probs=188.5
Q ss_pred CCCceeEeeeccccccCccccCCccCCCCCccceeeEEECC--EEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCC
Q 010571 61 RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV 138 (507)
Q Consensus 61 ~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~ 138 (507)
.+-.|.+++..... -++...-|..|.+|.++...+ +||++||+++... ..++|.|+...+.|..+...+..
T Consensus 237 y~~~W~~i~~~~~~------~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~ 309 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTK------GDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEG 309 (723)
T ss_pred ccccccccCchhhc------ccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCC
Confidence 35678887765410 011124577899999999854 9999999998776 78899999999999999877779
Q ss_pred CCCcccceEEEECC--EEEEEcCcCCCC-----CccCcEEEEEcCCCcEEEeecCC---CCCCCCCCceEEEEcCc-EEE
Q 010571 139 PVARGGHSVTLVGS--RLIIFGGEDRSR-----KLLNDVHFLDLETMTWDAVEVTQ---TPPAPRYDHSAALHANR-YLI 207 (507)
Q Consensus 139 p~~r~~~~~~~~~~--~l~~~GG~~~~~-----~~~~~~~~~d~~t~~W~~~~~~g---~~p~~r~~~~~~~~~~~-~l~ 207 (507)
|.+|..|.++..-. ++|+.|-+-+.. ..-.|+|.||.++..|.-++-.. ..|...+.|.|++.++. .+|
T Consensus 310 PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iy 389 (723)
T KOG2437|consen 310 PGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIY 389 (723)
T ss_pred CcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEE
Confidence 99999999988765 899999874322 23568999999999999886432 35888999999998663 589
Q ss_pred EEeCCCCC---cCCCcEEEEECCCCcEEeeeec----C---CCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEE
Q 010571 208 VFGGCSHS---IFFNDLHVLDLQTNEWSQPEIK----G---DLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLN 275 (507)
Q Consensus 208 i~GG~~~~---~~~~~i~~~d~~~~~W~~~~~~----~---~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d 275 (507)
||||..-. ....-+|.||.....|..+... + ..-..|.+|.+-.. ++.+|++||...+..++-...|+
T Consensus 390 VfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~ 469 (723)
T KOG2437|consen 390 VFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYD 469 (723)
T ss_pred EecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcce
Confidence 99998532 3456699999999999885321 1 11224777776555 56799999976665555455566
Q ss_pred cCcCeeEEeccCC--CCCCCCCCCCceEEEEEcCceEEEEEcccC-------CCcCCeEEEEECCCCCCCCCcc
Q 010571 276 MTKLAWSILTSVK--GRNPLASEGLSVCSAIIEGEHHLVAFGGYN-------GKYNNEVFVMRLKPRDIPRPKI 340 (507)
Q Consensus 276 ~~~~~W~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~-------~~~~~~v~~~~~~~~~w~~~~~ 340 (507)
+....=..+.... ...-.|..++...++.-+..+.|.+.-|.. .+..+.+|+|++.++.|..+..
T Consensus 470 I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~ 543 (723)
T KOG2437|consen 470 IDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYK 543 (723)
T ss_pred eccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhh
Confidence 5443322221110 111112223333333334456777777764 2356889999999999977654
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.20 E-value=4.7e-11 Score=81.17 Aligned_cols=50 Identities=30% Similarity=0.346 Sum_probs=45.7
Q ss_pred CccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCc
Q 010571 90 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR 142 (507)
Q Consensus 90 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r 142 (507)
+|.+|++++++++|||+||........+++++||+.|++|+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 58999999999999999999886556889999999999999998 888876
No 32
>PLN02772 guanylate kinase
Probab=99.18 E-value=1.9e-10 Score=110.63 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=81.0
Q ss_pred CCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCC
Q 010571 136 GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS 215 (507)
Q Consensus 136 g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~ 215 (507)
|-.+.++.+++++.+++++|++||.++.+..++.+++||+.|.+|..+.+.|..|.+|.+|+++++++++|+|+++....
T Consensus 19 ~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 19 GFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred CccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence 34567899999999999999999998876578999999999999999999999999999999999999999999986544
Q ss_pred cCCCcEEEEECCCC
Q 010571 216 IFFNDLHVLDLQTN 229 (507)
Q Consensus 216 ~~~~~i~~~d~~~~ 229 (507)
. .++|.+.+.|-
T Consensus 99 ~--~~~w~l~~~t~ 110 (398)
T PLN02772 99 D--DSIWFLEVDTP 110 (398)
T ss_pred c--cceEEEEcCCH
Confidence 2 67888887663
No 33
>PF13964 Kelch_6: Kelch motif
Probab=99.10 E-value=2.3e-10 Score=77.71 Aligned_cols=46 Identities=37% Similarity=0.761 Sum_probs=43.0
Q ss_pred ccccceEEEECCEEEEEcCCCC-CccCCceEEEECCCCceeEeeecc
Q 010571 27 PRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLET 72 (507)
Q Consensus 27 ~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~ 72 (507)
||.+|++++++++||||||..+ ...++++++||+.|++|+.+++++
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 6999999999999999999888 788899999999999999999775
No 34
>PLN02772 guanylate kinase
Probab=99.01 E-value=2.3e-09 Score=103.29 Aligned_cols=90 Identities=16% Similarity=0.269 Sum_probs=76.1
Q ss_pred CCCCCCCCCceEEEEcCcEEEEEeCCCCCc-CCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE-CCEEEEEeccCC
Q 010571 187 QTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN 264 (507)
Q Consensus 187 g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~ 264 (507)
|..+.++.+++++.+++ ++|||||..+.. .++.+++||..+.+|..+.+.|..|.||.+|+++++ +++|+|++++..
T Consensus 19 ~~~~~~~~~~tav~igd-k~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 19 GFGVKPKNRETSVTIGD-KTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred CccCCCCCcceeEEECC-EEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence 34566899999999965 599999987765 789999999999999999999999999999999999 578999987654
Q ss_pred CCCcceEEEEEcCcC
Q 010571 265 NNGCQETIVLNMTKL 279 (507)
Q Consensus 265 ~~~~~d~~~~d~~~~ 279 (507)
.. .++|.+.+.+.
T Consensus 98 ~~--~~~w~l~~~t~ 110 (398)
T PLN02772 98 PD--DSIWFLEVDTP 110 (398)
T ss_pred Cc--cceEEEEcCCH
Confidence 42 56888887664
No 35
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=99.00 E-value=3e-08 Score=88.88 Aligned_cols=162 Identities=23% Similarity=0.385 Sum_probs=106.1
Q ss_pred EEEEEcCcCCCCCccCcEEEEEcCCCc--------EEEeecCCCCCCCCCCceEEEE---cCcEEEEEeCCCCC------
Q 010571 153 RLIIFGGEDRSRKLLNDVHFLDLETMT--------WDAVEVTQTPPAPRYDHSAALH---ANRYLIVFGGCSHS------ 215 (507)
Q Consensus 153 ~l~~~GG~~~~~~~~~~~~~~d~~t~~--------W~~~~~~g~~p~~r~~~~~~~~---~~~~l~i~GG~~~~------ 215 (507)
..+|.||...++...+.+|++.+.+.. ..+...-|+.|.+|++|++.++ +....++|||.+.-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 466779999888888999999876543 4455566899999999999886 33468999998511
Q ss_pred --------cCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC--CCcceEEEEEcCcCeeEEec
Q 010571 216 --------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--NGCQETIVLNMTKLAWSILT 285 (507)
Q Consensus 216 --------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--~~~~d~~~~d~~~~~W~~~~ 285 (507)
.+...++.+|+.-+..+.-. .+.+....++|.+.+-+|.+|++||+.-. .....++.+...-- +.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLl----lG 194 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLL----LG 194 (337)
T ss_pred hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeec----CC
Confidence 23456889999888777632 25666778899999999999999998533 23344555542211 01
Q ss_pred cCCCCCCCCCCCCceEEEEE--cCceEEEEEcccCC
Q 010571 286 SVKGRNPLASEGLSVCSAII--EGEHHLVAFGGYNG 319 (507)
Q Consensus 286 ~~~~~~p~~~~~~~~~~~~~--~~~~~l~v~GG~~~ 319 (507)
++.........+.+..++++ .+.+..+|+||+..
T Consensus 195 SP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~s 230 (337)
T PF03089_consen 195 SPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQS 230 (337)
T ss_pred CceeEEEECCCCceEeeeeEeecCCCceEEEecccc
Confidence 11101111223444444333 23467888999864
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.96 E-value=1.6e-09 Score=73.15 Aligned_cols=48 Identities=42% Similarity=0.758 Sum_probs=42.5
Q ss_pred CCEEEEEcCcC-CCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEE
Q 010571 151 GSRLIIFGGED-RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH 201 (507)
Q Consensus 151 ~~~l~~~GG~~-~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~ 201 (507)
+++||||||.+ .....+|++++||+.+.+|+.+ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57899999998 4566799999999999999988 478999999999874
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.95 E-value=1.9e-09 Score=72.72 Aligned_cols=47 Identities=43% Similarity=0.730 Sum_probs=42.2
Q ss_pred CcEEEEEeCCC--CCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE
Q 010571 203 NRYLIVFGGCS--HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 252 (507)
Q Consensus 203 ~~~l~i~GG~~--~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 252 (507)
+++||||||.+ ....+|++|+||+.+++|+.+ +++|.+|++|++++|
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 45799999998 568889999999999999997 789999999999875
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.94 E-value=1.7e-09 Score=72.45 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=42.3
Q ss_pred CccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC
Q 010571 90 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP 139 (507)
Q Consensus 90 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p 139 (507)
||.+|++++++++||++||.......++++++||+.+++|+.++ +||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP---PMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE---EES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC---CCC
Confidence 58999999999999999999996667999999999999999998 554
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.93 E-value=1.5e-09 Score=72.77 Aligned_cols=46 Identities=33% Similarity=0.608 Sum_probs=42.0
Q ss_pred ccccceEEEECCEEEEEcCCCC-CccCCceEEEECCCCceeEeeecc
Q 010571 27 PRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLET 72 (507)
Q Consensus 27 ~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~ 72 (507)
||.+|+++++++.||++||... ...++++++||+.+++|..+++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6999999999999999999887 788899999999999999999863
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.91 E-value=3.3e-09 Score=71.59 Aligned_cols=45 Identities=42% Similarity=0.764 Sum_probs=41.2
Q ss_pred ccccceEEEECCEEEEEcCC---CCCccCCceEEEECCCCceeEeeec
Q 010571 27 PRYKHAAAVFDQKLYIVGGS---RNGRFLSDVQVFDLRSLAWSNLRLE 71 (507)
Q Consensus 27 ~r~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~~d~~t~~W~~~~~~ 71 (507)
||.+|++++++++||||||. ......+++++||+.+.+|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 5567889999999999999998865
No 41
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.86 E-value=8.9e-07 Score=79.64 Aligned_cols=139 Identities=24% Similarity=0.311 Sum_probs=93.8
Q ss_pred cCCCCCccceeeEEE-C-----C-EEEEEcccCCCCCCcceEEEEECCCCc--------EEEeecCCCCCCCcccceEEE
Q 010571 85 LEVLPPMSDHCMVKW-G-----T-KLLILGGHYKKSSDSMIVRFIDLETNL--------CGVMETSGKVPVARGGHSVTL 149 (507)
Q Consensus 85 ~~~p~~r~~~~~~~~-~-----~-~iyv~GG~~~~~~~~~~~~~~d~~t~~--------W~~~~~~g~~p~~r~~~~~~~ 149 (507)
+.-.||..+.+++.+ + . .-++-||.+++....+.+|++...+.. +.+....|+.|.+|++|++.+
T Consensus 16 SCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~v 95 (337)
T PF03089_consen 16 SCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINV 95 (337)
T ss_pred cccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEE
Confidence 455566667777777 2 1 345678988888877888888776543 344445689999999999888
Q ss_pred EC----CEEEEEcCcCCC-------------CCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCC
Q 010571 150 VG----SRLIIFGGEDRS-------------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 212 (507)
Q Consensus 150 ~~----~~l~~~GG~~~~-------------~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~ 212 (507)
+. .-+++|||+..- -.+...|+.+|+..+-.+..... .+-.+.++|.+.+- ++.+|++||.
T Consensus 96 V~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar-~D~VYilGGH 173 (337)
T PF03089_consen 96 VHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLAR-NDCVYILGGH 173 (337)
T ss_pred EEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEec-CceEEEEccE
Confidence 72 258899997421 12345688999988877665432 44556677766665 5569999998
Q ss_pred CCC--cCCCcEEEEE
Q 010571 213 SHS--IFFNDLHVLD 225 (507)
Q Consensus 213 ~~~--~~~~~i~~~d 225 (507)
.-. .....++++.
T Consensus 174 sl~sd~Rpp~l~rlk 188 (337)
T PF03089_consen 174 SLESDSRPPRLYRLK 188 (337)
T ss_pred EccCCCCCCcEEEEE
Confidence 533 3334455554
No 42
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.84 E-value=9.5e-09 Score=69.32 Aligned_cols=44 Identities=30% Similarity=0.315 Sum_probs=39.1
Q ss_pred CccceeeEEECCEEEEEccc--CCCCCCcceEEEEECCCCcEEEee
Q 010571 90 PMSDHCMVKWGTKLLILGGH--YKKSSDSMIVRFIDLETNLCGVME 133 (507)
Q Consensus 90 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~~d~~t~~W~~~~ 133 (507)
||.+|++++++++|||+||+ .......+++++||+.+++|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 58999999999999999999 334446889999999999999987
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.81 E-value=4.8e-09 Score=70.94 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=31.9
Q ss_pred CccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC
Q 010571 90 PMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP 139 (507)
Q Consensus 90 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p 139 (507)
||++|+++.+ +++||||||........+++++||+.+++|++++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 6899999999 5999999999987666899999999999999995 665
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.80 E-value=5.3e-09 Score=70.69 Aligned_cols=45 Identities=33% Similarity=0.731 Sum_probs=30.9
Q ss_pred ccccceEEEE-CCEEEEEcCCCCC-ccCCceEEEECCCCceeEeeec
Q 010571 27 PRYKHAAAVF-DQKLYIVGGSRNG-RFLSDVQVFDLRSLAWSNLRLE 71 (507)
Q Consensus 27 ~r~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~~d~~t~~W~~~~~~ 71 (507)
||.+|+++.+ ++.||||||.... ..++++++||+.+++|++++.+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence 7999999999 5899999998775 6899999999999999999654
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.75 E-value=2.1e-08 Score=64.90 Aligned_cols=40 Identities=45% Similarity=0.808 Sum_probs=36.0
Q ss_pred CCCccccceEEEECCEEEEEcCCC--CCccCCceEEEECCCC
Q 010571 24 RPSPRYKHAAAVFDQKLYIVGGSR--NGRFLSDVQVFDLRSL 63 (507)
Q Consensus 24 ~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~~d~~t~ 63 (507)
+|.||.+|++++++++||||||.. ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999988 4778899999998763
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.72 E-value=1.8e-06 Score=78.61 Aligned_cols=180 Identities=14% Similarity=0.152 Sum_probs=112.5
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCC----CcEEEeecCCCCCCC
Q 010571 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET----MTWDAVEVTQTPPAP 192 (507)
Q Consensus 117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t----~~W~~~~~~g~~p~~ 192 (507)
..-..||+.|++++.+... ....+...+..-++.+++.||.... ...+..|++.+ ..|.+... .+-.+
T Consensus 46 a~s~~yD~~tn~~rpl~v~---td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~--~m~~~ 117 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQ---TDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN--DMQSG 117 (243)
T ss_pred EEEEEEecCCCcEEeccCC---CCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc--cccCC
Confidence 3466799999999988631 2222222233347899999998653 34688888865 67988763 47889
Q ss_pred CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCC------CcEEeeeec-CCCCCCCcceEEEEECCEEEEEeccCCC
Q 010571 193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT------NEWSQPEIK-GDLVTGRAGHAGITIDENWYIVGGGDNN 265 (507)
Q Consensus 193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~------~~W~~~~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 265 (507)
|-+.+++.+.|+.++|+||... ..+.|-+.. ..|..+... ...+...+-+....-+++||+++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--- 189 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--- 189 (243)
T ss_pred CccccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---
Confidence 9999999999999999999872 223333321 122222111 1223334444555568999999763
Q ss_pred CCcceEEEEEcCcCee-EEeccCCCCC-CCCCCCCceEEEE--EcC---ceEEEEEcc
Q 010571 266 NGCQETIVLNMTKLAW-SILTSVKGRN-PLASEGLSVCSAI--IEG---EHHLVAFGG 316 (507)
Q Consensus 266 ~~~~d~~~~d~~~~~W-~~~~~~~~~~-p~~~~~~~~~~~~--~~~---~~~l~v~GG 316 (507)
+..+||..++++ +.++.+|+.. ..|..+.++-.-. .+. ...|+|+||
T Consensus 190 ----~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl~~~~~~~~~~evlvCGG 243 (243)
T PF07250_consen 190 ----GSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPLTDTPPNNYTAEVLVCGG 243 (243)
T ss_pred ----CcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEecCccCCCCCCCeEEEEeCC
Confidence 357899999987 7888888752 2222333222211 111 256888887
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.65 E-value=6.2e-08 Score=62.72 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=35.6
Q ss_pred CCCCccceeeEEECCEEEEEcccCC-CCCCcceEEEEECCCC
Q 010571 87 VLPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETN 127 (507)
Q Consensus 87 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~t~ 127 (507)
.|++|.+|+++.++++|||+||... .....+++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 3779999999999999999999994 5556889999998764
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.54 E-value=6.3e-06 Score=75.16 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=95.6
Q ss_pred ceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCC----CcE
Q 010571 54 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET----NLC 129 (507)
Q Consensus 54 ~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t----~~W 129 (507)
....||+.|++++.+...... -+++++ ..-++++++.||.... ...+..|++.+ ..|
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~---------------FCSgg~-~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w 107 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDT---------------FCSGGA-FLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDW 107 (243)
T ss_pred EEEEEecCCCcEEeccCCCCC---------------cccCcC-CCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCc
Confidence 356899999999988765432 344443 3348899999998663 33577888876 679
Q ss_pred EEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCC-----CcEEEeecCC-CCCCCCCCceEEEEc
Q 010571 130 GVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLET-----MTWDAVEVTQ-TPPAPRYDHSAALHA 202 (507)
Q Consensus 130 ~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t-----~~W~~~~~~g-~~p~~r~~~~~~~~~ 202 (507)
..... .|-.+|.+.+++.+ +++++|+||.... ..+.+.... ..|..+.... ..+. -.+.-+.+..
T Consensus 108 ~e~~~--~m~~~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~-nlYP~~~llP 179 (243)
T PF07250_consen 108 TESPN--DMQSGRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPN-NLYPFVHLLP 179 (243)
T ss_pred eECcc--cccCCCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCcc-ccCceEEEcC
Confidence 88763 58899999988887 5699999998632 233333211 1222222111 1121 2233445567
Q ss_pred CcEEEEEeCCCCCcCCCcEEEEECCCCcE-Eee
Q 010571 203 NRYLIVFGGCSHSIFFNDLHVLDLQTNEW-SQP 234 (507)
Q Consensus 203 ~~~l~i~GG~~~~~~~~~i~~~d~~~~~W-~~~ 234 (507)
+++||+|+.. +-.+||..++++ +.+
T Consensus 180 dG~lFi~an~-------~s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 180 DGNLFIFANR-------GSIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEEcC-------CcEEEeCCCCeEEeeC
Confidence 8889999983 567889999987 444
No 49
>smart00612 Kelch Kelch domain.
Probab=98.44 E-value=3.7e-07 Score=60.96 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=40.3
Q ss_pred EEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC
Q 010571 102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS 152 (507)
Q Consensus 102 ~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 152 (507)
+||++||.... ..++++++||+.+++|...+ +||.+|..++++.+++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 48999998653 34788999999999999987 8999999999988764
No 50
>smart00612 Kelch Kelch domain.
Probab=98.40 E-value=5.4e-07 Score=60.13 Aligned_cols=47 Identities=28% Similarity=0.462 Sum_probs=40.9
Q ss_pred EEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECC
Q 010571 205 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 254 (507)
Q Consensus 205 ~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~ 254 (507)
+|||+||......++++++||+.++.|..+ +++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPL---PSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccC---CCCCCccccceEEEeCC
Confidence 389999987767789999999999999986 57899999999888764
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.17 E-value=0.0012 Score=60.90 Aligned_cols=199 Identities=14% Similarity=0.127 Sum_probs=106.9
Q ss_pred eEEEEECCCCcEEEeecCCCCCCC---cccc-eEEEE----CC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCC
Q 010571 118 IVRFIDLETNLCGVMETSGKVPVA---RGGH-SVTLV----GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT 188 (507)
Q Consensus 118 ~~~~~d~~t~~W~~~~~~g~~p~~---r~~~-~~~~~----~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~ 188 (507)
.+.++||.|+.|..++. ++.+ ...+ ....+ +. +++.+....... ....+++|++.++.|+.+...
T Consensus 15 ~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~-- 88 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECS-- 88 (230)
T ss_pred cEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccC--
Confidence 58999999999999973 2221 1111 11112 12 555554432111 245789999999999998732
Q ss_pred CCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eeecCCCCCCC----cceEEEEECCEEEEEeccC
Q 010571 189 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR----AGHAGITIDENWYIVGGGD 263 (507)
Q Consensus 189 ~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r----~~~~~~~~~~~l~v~GG~~ 263 (507)
.+........+.+ ++.+|-+...........|..||+.+.+|.. +. +|..+ .....+.++++|.++....
T Consensus 89 ~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~ 163 (230)
T TIGR01640 89 PPHHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKK 163 (230)
T ss_pred CCCccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecC
Confidence 2221222224445 5556665533221111269999999999995 42 23222 1335666688888776532
Q ss_pred CCCCcceEEEEE-cCcCeeEEeccCCCCC-CCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571 264 NNNGCQETIVLN-MTKLAWSILTSVKGRN-PLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 332 (507)
Q Consensus 264 ~~~~~~d~~~~d-~~~~~W~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~ 332 (507)
.. ..-++|+++ -....|+++-.++... +..... .....+++++ .|++..+. ....-+..||+.+
T Consensus 164 ~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~-~~~~~~~~~g-~I~~~~~~--~~~~~~~~y~~~~ 229 (230)
T TIGR01640 164 DT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDD-NFLSGFTDKG-EIVLCCED--ENPFYIFYYNVGE 229 (230)
T ss_pred CC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhh-eeEeEEeeCC-EEEEEeCC--CCceEEEEEeccC
Confidence 21 225788886 4456799865554311 111111 2233344554 44444432 1112378888765
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.14 E-value=0.0011 Score=61.24 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=111.7
Q ss_pred CCCeEeeCCCCCeEEeccCCCCCCccc--cceEEEE------CC-EEEEEcCCCCCccCCceEEEECCCCceeEeeeccc
Q 010571 3 SGSWHLELPYDLWVTLPVSGARPSPRY--KHAAAVF------DQ-KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETE 73 (507)
Q Consensus 3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~--~~~~~~~------~~-~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~ 73 (507)
...+++||-+.+|..+|. .+.++. ...+..+ +. +|+.+.....+.....+.+|+..++.|+.+...+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCC
Confidence 345789999999999983 222111 1101111 11 34444332112234578999999999999874221
Q ss_pred cccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEE-eecCCCCCCCc----ccceEE
Q 010571 74 LDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV-METSGKVPVAR----GGHSVT 148 (507)
Q Consensus 74 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~g~~p~~r----~~~~~~ 148 (507)
. .......+.+++.||.+.-...... ...+..||+.+.+|.. ++ +|..+ ....++
T Consensus 91 --------------~-~~~~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~ 150 (230)
T TIGR01640 91 --------------H-HPLKSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLI 150 (230)
T ss_pred --------------C-ccccCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeee----cCccccccccceEEE
Confidence 1 1111226778999999875432211 1269999999999995 54 34332 234567
Q ss_pred EECCEEEEEcCcCCCCCccCcEEEEE-cCCCcEEEeecCCCCCCCCCC---ceEEEEcCcEEEEEeCCCCCcCCCcEEEE
Q 010571 149 LVGSRLIIFGGEDRSRKLLNDVHFLD-LETMTWDAVEVTQTPPAPRYD---HSAALHANRYLIVFGGCSHSIFFNDLHVL 224 (507)
Q Consensus 149 ~~~~~l~~~GG~~~~~~~~~~~~~~d-~~t~~W~~~~~~g~~p~~r~~---~~~~~~~~~~l~i~GG~~~~~~~~~i~~~ 224 (507)
.++++|.++....... .-+||+++ .....|++.-.....+.+... .......++.|++..+.. ...-+..|
T Consensus 151 ~~~G~L~~v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y 225 (230)
T TIGR01640 151 NYKGKLAVLKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYY 225 (230)
T ss_pred EECCEEEEEEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEE
Confidence 7789888876543211 23677775 445679986544321122221 123344556677665421 01138888
Q ss_pred ECCCC
Q 010571 225 DLQTN 229 (507)
Q Consensus 225 d~~~~ 229 (507)
|+.++
T Consensus 226 ~~~~~ 230 (230)
T TIGR01640 226 NVGEN 230 (230)
T ss_pred eccCC
Confidence 88764
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.75 E-value=0.048 Score=54.83 Aligned_cols=240 Identities=13% Similarity=0.102 Sum_probs=127.0
Q ss_pred eEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEccc
Q 010571 32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGH 109 (507)
Q Consensus 32 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 109 (507)
+.++.++.||+.+. ...++.||..+++ |+.-...... ......+.+...+.+..+++||+.+.
T Consensus 64 sPvv~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~v~v~~~- 128 (394)
T PRK11138 64 HPAVAYNKVYAADR------AGLVKALDADTGKEIWSVDLSEKDG--------WFSKNKSALLSGGVTVAGGKVYIGSE- 128 (394)
T ss_pred ccEEECCEEEEECC------CCeEEEEECCCCcEeeEEcCCCccc--------ccccccccccccccEEECCEEEEEcC-
Confidence 44667999999865 2368999998874 7653221000 00000112333445667888887542
Q ss_pred CCCCCCcceEEEEECCCC--cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEeec
Q 010571 110 YKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEV 185 (507)
Q Consensus 110 ~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~ 185 (507)
...++.||..|+ .|+.... .. ...+.+..++.+|+..+ .+.++.||+.+++ |+....
T Consensus 129 ------~g~l~ald~~tG~~~W~~~~~-----~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 129 ------KGQVYALNAEDGEVAWQTKVA-----GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred ------CCEEEEEECCCCCCcccccCC-----Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCC
Confidence 235899999876 5875431 11 11223455778777533 2369999998876 876532
Q ss_pred CCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc--EEeeeecC--CCCCCC---cceEEEEECCEEEE
Q 010571 186 TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKG--DLVTGR---AGHAGITIDENWYI 258 (507)
Q Consensus 186 ~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~--~~p~~r---~~~~~~~~~~~l~v 258 (507)
. +....+...+-++. ++.+|+ +..+ ..++.+|+.++. |+.....+ .....| ...+-++.++.+|+
T Consensus 190 ~-~~~~~~~~~sP~v~-~~~v~~-~~~~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~ 261 (394)
T PRK11138 190 V-PSLTLRGESAPATA-FGGAIV-GGDN-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA 261 (394)
T ss_pred C-CcccccCCCCCEEE-CCEEEE-EcCC-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE
Confidence 1 11111222222333 454555 3322 457888888764 86521100 000001 11233456788887
Q ss_pred EeccCCCCCcceEEEEEcCcC--eeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC--C
Q 010571 259 VGGGDNNNGCQETIVLNMTKL--AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR--D 334 (507)
Q Consensus 259 ~GG~~~~~~~~d~~~~d~~~~--~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~--~ 334 (507)
.+. + ..++.+|+.+. .|+.- .... .. . ++. ++.||+... ...++.+|+.+. .
T Consensus 262 ~~~-~-----g~l~ald~~tG~~~W~~~--~~~~-------~~--~-~~~-~~~vy~~~~-----~g~l~ald~~tG~~~ 317 (394)
T PRK11138 262 LAY-N-----GNLVALDLRSGQIVWKRE--YGSV-------ND--F-AVD-GGRIYLVDQ-----NDRVYALDTRGGVEL 317 (394)
T ss_pred EEc-C-----CeEEEEECCCCCEEEeec--CCCc-------cC--c-EEE-CCEEEEEcC-----CCeEEEEECCCCcEE
Confidence 642 2 25889998876 48751 1110 01 1 122 336777553 356888888654 3
Q ss_pred CCC
Q 010571 335 IPR 337 (507)
Q Consensus 335 w~~ 337 (507)
|..
T Consensus 318 W~~ 320 (394)
T PRK11138 318 WSQ 320 (394)
T ss_pred Ecc
Confidence 654
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.71 E-value=0.071 Score=53.60 Aligned_cols=217 Identities=16% Similarity=0.158 Sum_probs=119.2
Q ss_pred CCeEeeCC--CCCeEEeccCC--CC---CCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCC--ceeEeeecccc
Q 010571 4 GSWHLELP--YDLWVTLPVSG--AR---PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETEL 74 (507)
Q Consensus 4 ~~~~~d~~--~~~W~~~~~~~--~~---p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~ 74 (507)
.+++||.. .-.|+.-.... .. +.++...+.++.++.||+.+. ...++.||..|+ .|+.-..
T Consensus 80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~---- 149 (394)
T PRK11138 80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------KGQVYALNAEDGEVAWQTKVA---- 149 (394)
T ss_pred eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC------CCEEEEEECCCCCCcccccCC----
Confidence 35788876 55687533210 00 112334445667888887543 246899999887 4865321
Q ss_pred ccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc--EEEeecCCCCCC--CcccceEEEE
Q 010571 75 DADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPV--ARGGHSVTLV 150 (507)
Q Consensus 75 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~--~r~~~~~~~~ 150 (507)
.....+.+..++.+|+..+ ...++.||+.+++ |+... ..|. .+...+-+..
T Consensus 150 ---------------~~~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~---~~~~~~~~~~~sP~v~ 204 (394)
T PRK11138 150 ---------------GEALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNL---DVPSLTLRGESAPATA 204 (394)
T ss_pred ---------------CceecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecC---CCCcccccCCCCCEEE
Confidence 1112233455788887543 2359999998885 77653 2221 1222233445
Q ss_pred CCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEeecC--CCCCCCC---CCceEEEEcCcEEEEEeCCCCCcCCCcEEE
Q 010571 151 GSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVT--QTPPAPR---YDHSAALHANRYLIVFGGCSHSIFFNDLHV 223 (507)
Q Consensus 151 ~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~--g~~p~~r---~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~ 223 (507)
++.+|+..+ ...++.+|+.+++ |...... +.....+ ...+.++ .++.+|+.+. + ..++.
T Consensus 205 ~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~-~-----g~l~a 270 (394)
T PRK11138 205 FGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAY-N-----GNLVA 270 (394)
T ss_pred CCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEc-C-----CeEEE
Confidence 666666432 2358889988764 8653211 0000001 1122233 3666776543 2 46899
Q ss_pred EECCCCc--EEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcC--eeEE
Q 010571 224 LDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL--AWSI 283 (507)
Q Consensus 224 ~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~--~W~~ 283 (507)
+|+.++. |+... + .+ ...++.++.+|+... ...++.+|+.+. .|+.
T Consensus 271 ld~~tG~~~W~~~~--~---~~---~~~~~~~~~vy~~~~------~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 271 LDLRSGQIVWKREY--G---SV---NDFAVDGGRIYLVDQ------NDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EECCCCCEEEeecC--C---Cc---cCcEEECCEEEEEcC------CCeEEEEECCCCcEEEcc
Confidence 9998875 87631 1 11 123556788888643 125889998776 4764
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.40 E-value=0.11 Score=47.98 Aligned_cols=207 Identities=18% Similarity=0.202 Sum_probs=116.4
Q ss_pred CeEeeCCC--CCeEEeccCCCCCCccccce--EEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCc
Q 010571 5 SWHLELPY--DLWVTLPVSGARPSPRYKHA--AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADK 78 (507)
Q Consensus 5 ~~~~d~~~--~~W~~~~~~~~~p~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~ 78 (507)
+.+||+.+ -.|..-.. + +..+.. .+..++.+|+..+ ...+++||+.+++ |+.-..
T Consensus 5 l~~~d~~tG~~~W~~~~~----~-~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~-------- 65 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLG----P-GIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLP-------- 65 (238)
T ss_dssp EEEEETTTTEEEEEEECS----S-SCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEECS--------
T ss_pred EEEEECCCCCEEEEEECC----C-CCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeecc--------
Confidence 45777753 45765321 1 122222 3347889998843 4679999999885 544331
Q ss_pred cccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCC--cEEE-eecCCCCCC-CcccceEEEECCEE
Q 010571 79 TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGV-METSGKVPV-ARGGHSVTLVGSRL 154 (507)
Q Consensus 79 ~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W~~-~~~~g~~p~-~r~~~~~~~~~~~l 154 (507)
.......+..++.||+..+ .+.++.||..++ .|+. ... ..+. ..........++.+
T Consensus 66 -----------~~~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~ 125 (238)
T PF13360_consen 66 -----------GPISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVDGDRL 125 (238)
T ss_dssp -----------SCGGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEETTEE
T ss_pred -----------ccccceeeecccccccccc-------eeeeEecccCCcceeeeecccc--ccccccccccCceEecCEE
Confidence 2222225777899988862 226999998877 5883 432 1111 22334444457777
Q ss_pred EEEcCcCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCCCC-------CceEEEEcCcEEEEEeCCCCCcCCCcEEEEE
Q 010571 155 IIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRY-------DHSAALHANRYLIVFGGCSHSIFFNDLHVLD 225 (507)
Q Consensus 155 ~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~-------~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d 225 (507)
|+... ...++.+|+.+++ |..... .+.... ..+..++.++.+|+..+.. .+..+|
T Consensus 126 ~~~~~-------~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d 189 (238)
T PF13360_consen 126 YVGTS-------SGKLVALDPKTGKLLWKYPVG---EPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVD 189 (238)
T ss_dssp EEEET-------CSEEEEEETTTTEEEEEEESS---TT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEE
T ss_pred EEEec-------cCcEEEEecCCCcEEEEeecC---CCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEE
Confidence 76653 3469999998875 666442 111111 1123334456777776643 266679
Q ss_pred CCCCc--EEeeeecCCCCCCCcceE-EEEECCEEEEEeccCCCCCcceEEEEEcCcCe
Q 010571 226 LQTNE--WSQPEIKGDLVTGRAGHA-GITIDENWYIVGGGDNNNGCQETIVLNMTKLA 280 (507)
Q Consensus 226 ~~~~~--W~~~~~~~~~p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~ 280 (507)
..++. |+.. .. . ..+ ....++.+|+.. . ...++.+|+.+++
T Consensus 190 ~~tg~~~w~~~-~~-----~--~~~~~~~~~~~l~~~~-~-----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 190 LATGEKLWSKP-IS-----G--IYSLPSVDGGTLYVTS-S-----DGRLYALDLKTGK 233 (238)
T ss_dssp TTTTEEEEEEC-SS--------ECECEECCCTEEEEEE-T-----TTEEEEEETTTTE
T ss_pred CCCCCEEEEec-CC-----C--ccCCceeeCCEEEEEe-C-----CCEEEEEECCCCC
Confidence 99987 8442 11 1 112 233355666654 2 1368999998874
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.12 E-value=0.35 Score=48.28 Aligned_cols=213 Identities=13% Similarity=0.124 Sum_probs=112.0
Q ss_pred CCeEeeCCCC--CeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCcc
Q 010571 4 GSWHLELPYD--LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKT 79 (507)
Q Consensus 4 ~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~ 79 (507)
.+++||+.++ .|..-... +...+.++.++.+|+.+. ...++.||+.++. |+....
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~--------- 134 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDE------RLSGGVGADGGLVFVGTE------KGEVIALDAEDGKELWRAKLS--------- 134 (377)
T ss_pred eEEEEEccCCcEeeeecCCC------CcccceEEcCCEEEEEcC------CCEEEEEECCCCcEeeeeccC---------
Confidence 4778887644 48643311 122234445677776433 2469999998874 754321
Q ss_pred ccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc--EEEeecCCCCCC-CcccceEEEECCEEEE
Q 010571 80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPV-ARGGHSVTLVGSRLII 156 (507)
Q Consensus 80 ~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~-~r~~~~~~~~~~~l~~ 156 (507)
.....+.+..++.+|+..+ ...++.+|+.+++ |+.... ..+. .+...+.+..++.+|
T Consensus 135 ----------~~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~--~~~~~~~~~~sp~~~~~~v~- 194 (377)
T TIGR03300 135 ----------SEVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRV--TPALTLRGSASPVIADGGVL- 194 (377)
T ss_pred ----------ceeecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccC--CCceeecCCCCCEEECCEEE-
Confidence 1112233445777777543 2348999998774 765431 1111 122233445566554
Q ss_pred EcCcCCCCCccCcEEEEEcCCCc--EEEeecCCC--CCCCCC--CceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571 157 FGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQT--PPAPRY--DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 230 (507)
Q Consensus 157 ~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~--~p~~r~--~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~ 230 (507)
+|.. ...++.+|+.+++ |+....... ....+. ..+...+.++.+|+.+.. ..++.||+.++.
T Consensus 195 ~~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~ 262 (377)
T TIGR03300 195 VGFA------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGR 262 (377)
T ss_pred EECC------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCc
Confidence 4432 2258999987764 764321100 000010 011222346666764432 358999998764
Q ss_pred --EEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcC--eeEE
Q 010571 231 --WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL--AWSI 283 (507)
Q Consensus 231 --W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~--~W~~ 283 (507)
|... .+ ...+.++.++.+|+... ...++.+|..+. .|+.
T Consensus 263 ~~W~~~-----~~---~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 263 VLWKRD-----AS---SYQGPAVDDNRLYVTDA------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred EEEeec-----cC---CccCceEeCCEEEEECC------CCeEEEEECCCCcEEEcc
Confidence 7652 11 11233455778887632 125888998765 4764
No 57
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.91 E-value=0.66 Score=48.04 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=68.3
Q ss_pred ccceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEE
Q 010571 29 YKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLI 105 (507)
Q Consensus 29 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv 105 (507)
...+.++.++.||+... ...++.+|+.|++ |+.-...... ...+ +.....++..+ ++||+
T Consensus 53 ~~~sPvv~~g~vy~~~~------~g~l~AlD~~tG~~~W~~~~~~~~~----------~~~~-~~~~~g~~~~~~~~V~v 115 (488)
T cd00216 53 QEGTPLVVDGDMYFTTS------HSALFALDAATGKVLWRYDPKLPAD----------RGCC-DVVNRGVAYWDPRKVFF 115 (488)
T ss_pred cccCCEEECCEEEEeCC------CCcEEEEECCCChhhceeCCCCCcc----------cccc-ccccCCcEEccCCeEEE
Confidence 33345667899998755 2568999999874 8763322100 0000 11112234446 78887
Q ss_pred EcccCCCCCCcceEEEEECCCC--cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCC---CccCcEEEEEcCCCc-
Q 010571 106 LGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR---KLLNDVHFLDLETMT- 179 (507)
Q Consensus 106 ~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~---~~~~~~~~~d~~t~~- 179 (507)
... ...++.+|..|+ .|+.-......+......+.++.++.+| +|..+... .....++.||..|++
T Consensus 116 ~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 116 GTF-------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVI-IGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred ecC-------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEE-EeccccccccCCCCcEEEEEECCCCce
Confidence 432 235889999876 4775431100000011223344555555 44332211 124579999998764
Q ss_pred -EEEee
Q 010571 180 -WDAVE 184 (507)
Q Consensus 180 -W~~~~ 184 (507)
|..-.
T Consensus 188 ~W~~~~ 193 (488)
T cd00216 188 LWRFYT 193 (488)
T ss_pred eeEeec
Confidence 87644
No 58
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.91 E-value=0.41 Score=45.49 Aligned_cols=187 Identities=20% Similarity=0.152 Sum_probs=90.6
Q ss_pred EEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcc
Q 010571 39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSM 117 (507)
Q Consensus 39 ~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~ 117 (507)
.+|+.++.+ ..+.+||+.++.-...-.... .++ ..+...+ ..+|+.++. .+
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~---------------~~~--~l~~~~dg~~l~~~~~~------~~ 53 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQ---------------RPR--GITLSKDGKLLYVCASD------SD 53 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCC---------------CCC--ceEECCCCCEEEEEECC------CC
Confidence 466666633 468889998876433222110 011 1111223 456776642 23
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571 118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~ 195 (507)
.+.+||+.+++....... .+.+ ..++.. ++.+|+.++. .+.+..||+.+.+-...- +.....
T Consensus 54 ~v~~~d~~~~~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~-----~~~~~~ 117 (300)
T TIGR03866 54 TIQVIDLATGEVIGTLPS--GPDP---ELFALHPNGKILYIANED------DNLVTVIDIETRKVLAEI-----PVGVEP 117 (300)
T ss_pred eEEEEECCCCcEEEeccC--CCCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEe-----eCCCCc
Confidence 588999998876442211 1111 122222 3356665442 236999999875432211 111112
Q ss_pred ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEE
Q 010571 196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 275 (507)
Q Consensus 196 ~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d 275 (507)
++++...++.+++++..+. +.++.||..+..-......+. +..+.....++..+++++... ..+.+||
T Consensus 118 ~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~----~~v~i~d 185 (300)
T TIGR03866 118 EGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKELWVSSEIG----GTVSVID 185 (300)
T ss_pred ceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEEEEEcCCC----CEEEEEE
Confidence 3445555665666665432 346677877654332111111 111222333555555554222 2578899
Q ss_pred cCcCee
Q 010571 276 MTKLAW 281 (507)
Q Consensus 276 ~~~~~W 281 (507)
+.+...
T Consensus 186 ~~~~~~ 191 (300)
T TIGR03866 186 VATRKV 191 (300)
T ss_pred cCccee
Confidence 887643
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.87 E-value=0.29 Score=47.97 Aligned_cols=132 Identities=19% Similarity=0.235 Sum_probs=81.8
Q ss_pred ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCcc----CcEEEE-
Q 010571 99 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL----NDVHFL- 173 (507)
Q Consensus 99 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~----~~~~~~- 173 (507)
.+++|+..+.. ..+.+||+.+..-...+ .++.+.....++.++++||++.......... ...+.+
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 48999999664 23789999999777555 5666666667888899999998774332110 144444
Q ss_pred -E--------cCCCcEEEeecCCCCCCCCCC-------ceEEEEcCcEEEE-EeCCCCCcCCCcEEEEECCCCcEEeeee
Q 010571 174 -D--------LETMTWDAVEVTQTPPAPRYD-------HSAALHANRYLIV-FGGCSHSIFFNDLHVLDLQTNEWSQPEI 236 (507)
Q Consensus 174 -d--------~~t~~W~~~~~~g~~p~~r~~-------~~~~~~~~~~l~i-~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 236 (507)
+ .....|..+++ +|..+.. .+-+++++..|+| .-|.. .-.+.||..+.+|+++
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~-- 214 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKH-- 214 (342)
T ss_pred cccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeec--
Confidence 3 22346777653 3333222 1122334556776 33321 2379999999999996
Q ss_pred cCCCCCCCcceEEEE
Q 010571 237 KGDLVTGRAGHAGIT 251 (507)
Q Consensus 237 ~~~~p~~r~~~~~~~ 251 (507)
|++..|-.+.+-.+
T Consensus 215 -GdW~LPF~G~a~y~ 228 (342)
T PF07893_consen 215 -GDWMLPFHGQAEYV 228 (342)
T ss_pred -cceecCcCCccEEC
Confidence 77777755544333
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.82 E-value=0.041 Score=53.85 Aligned_cols=118 Identities=18% Similarity=0.158 Sum_probs=75.3
Q ss_pred ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCC
Q 010571 36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD 115 (507)
Q Consensus 36 ~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 115 (507)
.+++|+.++.. ..+.+||+.|..-...|.+.. +...-.++.++++||++.........
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~----------------pk~~pisv~VG~~LY~m~~~~~~~~~ 132 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHS----------------PKRCPISVSVGDKLYAMDRSPFPEPA 132 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCC----------------CCcceEEEEeCCeEEEeeccCccccc
Confidence 48899999763 448899999988877666542 33344677779999999876544221
Q ss_pred c----ceEEEE--EC--------CCCcEEEeecCCCCCCCcc-------cceEEEE-CCEEEE-EcCcCCCCCccCcEEE
Q 010571 116 S----MIVRFI--DL--------ETNLCGVMETSGKVPVARG-------GHSVTLV-GSRLII-FGGEDRSRKLLNDVHF 172 (507)
Q Consensus 116 ~----~~~~~~--d~--------~t~~W~~~~~~g~~p~~r~-------~~~~~~~-~~~l~~-~GG~~~~~~~~~~~~~ 172 (507)
. ..++.+ ++ .+-.|..++ ++|..+. -.+.+++ +..||| .-|.. ...+.
T Consensus 133 ~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTys 203 (342)
T PF07893_consen 133 GRPDFPCFEALVYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYS 203 (342)
T ss_pred cCccceeEEEeccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEE
Confidence 1 134444 31 223677776 3343322 2344455 557888 43321 24999
Q ss_pred EEcCCCcEEEee
Q 010571 173 LDLETMTWDAVE 184 (507)
Q Consensus 173 ~d~~t~~W~~~~ 184 (507)
||+.+.+|+..-
T Consensus 204 fDt~~~~W~~~G 215 (342)
T PF07893_consen 204 FDTESHEWRKHG 215 (342)
T ss_pred EEcCCcceeecc
Confidence 999999999984
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.75 E-value=0.71 Score=46.00 Aligned_cols=230 Identities=16% Similarity=0.105 Sum_probs=118.7
Q ss_pred ceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcc
Q 010571 31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG 108 (507)
Q Consensus 31 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG 108 (507)
.+.++.++.+|+.+. ...++.||+.+++ |+.--.. ....+.+..++.+|+.+.
T Consensus 59 ~~p~v~~~~v~v~~~------~g~v~a~d~~tG~~~W~~~~~~-------------------~~~~~p~v~~~~v~v~~~ 113 (377)
T TIGR03300 59 LQPAVAGGKVYAADA------DGTVVALDAETGKRLWRVDLDE-------------------RLSGGVGADGGLVFVGTE 113 (377)
T ss_pred cceEEECCEEEEECC------CCeEEEEEccCCcEeeeecCCC-------------------CcccceEEcCCEEEEEcC
Confidence 455667888887754 2469999998875 7542211 112233444677776442
Q ss_pred cCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEee
Q 010571 109 HYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE 184 (507)
Q Consensus 109 ~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~ 184 (507)
...++.||+.+++ |+... +.. ...+.+..++.+|+..+ ...++.||+.+++ |+...
T Consensus 114 -------~g~l~ald~~tG~~~W~~~~-----~~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 114 -------KGEVIALDAEDGKELWRAKL-----SSE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSR 173 (377)
T ss_pred -------CCEEEEEECCCCcEeeeecc-----Cce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEcc
Confidence 2359999998774 76542 111 11223345677776532 2359999998764 76543
Q ss_pred cCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc--EEeeeecC--CCCCCC---cceEEEEECCEEE
Q 010571 185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKG--DLVTGR---AGHAGITIDENWY 257 (507)
Q Consensus 185 ~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~--~~p~~r---~~~~~~~~~~~l~ 257 (507)
.. +....+...+.+.. ++ .+++|..+ ..++.+|+.++. |+.....+ .....+ ...+.++.++.+|
T Consensus 174 ~~-~~~~~~~~~sp~~~-~~-~v~~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 174 VT-PALTLRGSASPVIA-DG-GVLVGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred CC-CceeecCCCCCEEE-CC-EEEEECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 21 10011222233334 45 34455432 358899987764 76421100 000001 1122334566777
Q ss_pred EEeccCCCCCcceEEEEEcCcC--eeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC--
Q 010571 258 IVGGGDNNNGCQETIVLNMTKL--AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR-- 333 (507)
Q Consensus 258 v~GG~~~~~~~~d~~~~d~~~~--~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~-- 333 (507)
+... + ..++.||+.+. .|..- ... . ...++. ++.||+... ...++.+|..+.
T Consensus 246 ~~~~-~-----g~l~a~d~~tG~~~W~~~--~~~--------~-~~p~~~--~~~vyv~~~-----~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 246 AVSY-Q-----GRVAALDLRSGRVLWKRD--ASS--------Y-QGPAVD--DNRLYVTDA-----DGVVVALDRRSGSE 301 (377)
T ss_pred EEEc-C-----CEEEEEECCCCcEEEeec--cCC--------c-cCceEe--CCEEEEECC-----CCeEEEEECCCCcE
Confidence 6532 1 25888998765 47641 110 0 111122 236776542 346888887554
Q ss_pred CCCC
Q 010571 334 DIPR 337 (507)
Q Consensus 334 ~w~~ 337 (507)
.|..
T Consensus 302 ~W~~ 305 (377)
T TIGR03300 302 LWKN 305 (377)
T ss_pred EEcc
Confidence 3554
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.66 E-value=0.53 Score=43.29 Aligned_cols=208 Identities=19% Similarity=0.256 Sum_probs=113.8
Q ss_pred ceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCcccee--eEEECCEEEEEcccCCCCCCcceEEEEECCCCc-
Q 010571 54 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHC--MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL- 128 (507)
Q Consensus 54 ~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~- 128 (507)
.+..+|+.+++ |+.-. .. +..+.. .+..++.+|+..+ ...++.||..+++
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~~----------------~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~ 58 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--GP----------------GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKV 58 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--SS----------------SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEE
T ss_pred EEEEEECCCCCEEEEEEC--CC----------------CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCE
Confidence 57889998874 76622 10 122222 3447899999842 4469999998885
Q ss_pred -EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEE-eecCCCCCCCCCCceEEEEcCc
Q 010571 129 -CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDA-VEVTQTPPAPRYDHSAALHANR 204 (507)
Q Consensus 129 -W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~-~~~~g~~p~~r~~~~~~~~~~~ 204 (507)
|+.-. +.+... ..+..++.+|+..+ .+.++.||+.+++ |+. .... .+.+........+.++
T Consensus 59 ~W~~~~-----~~~~~~-~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~~~ 123 (238)
T PF13360_consen 59 LWRFDL-----PGPISG-APVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSS--PPAGVRSSSSPAVDGD 123 (238)
T ss_dssp EEEEEC-----SSCGGS-GEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SS--CTCSTB--SEEEEETT
T ss_pred EEEeec-----cccccc-eeeecccccccccc-------eeeeEecccCCcceeeeeccccc--cccccccccCceEecC
Confidence 55442 222222 24677888888762 2269999987764 884 4321 1212222223333466
Q ss_pred EEEEEeCCCCCcCCCcEEEEECCCCc--EEeeeecCCCCCCC--------cceEEEEECCEEEEEeccCCCCCcceEEEE
Q 010571 205 YLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGR--------AGHAGITIDENWYIVGGGDNNNGCQETIVL 274 (507)
Q Consensus 205 ~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r--------~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 274 (507)
.+|+... ...++.+|+.++. |.... ..+... .....++.++.+|+..+.. .+..+
T Consensus 124 ~~~~~~~------~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~ 188 (238)
T PF13360_consen 124 RLYVGTS------SGKLVALDPKTGKLLWKYPV---GEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAV 188 (238)
T ss_dssp EEEEEET------CSEEEEEETTTTEEEEEEES---STT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEE
T ss_pred EEEEEec------cCcEEEEecCCCcEEEEeec---CCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEE
Confidence 4555443 2579999999875 77642 121110 1122233356777765422 15666
Q ss_pred EcCcCe--eEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571 275 NMTKLA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 333 (507)
Q Consensus 275 d~~~~~--W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~ 333 (507)
|..+.. |+. + +.. .. ......++.||+.. . ...++.+|+.+.
T Consensus 189 d~~tg~~~w~~-~-~~~---------~~-~~~~~~~~~l~~~~-~----~~~l~~~d~~tG 232 (238)
T PF13360_consen 189 DLATGEKLWSK-P-ISG---------IY-SLPSVDGGTLYVTS-S----DGRLYALDLKTG 232 (238)
T ss_dssp ETTTTEEEEEE-C-SS----------EC-ECEECCCTEEEEEE-T----TTEEEEEETTTT
T ss_pred ECCCCCEEEEe-c-CCC---------cc-CCceeeCCEEEEEe-C----CCEEEEEECCCC
Confidence 988886 844 2 221 11 11223344666655 2 367899998765
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.62 E-value=0.36 Score=47.45 Aligned_cols=215 Identities=23% Similarity=0.318 Sum_probs=108.6
Q ss_pred CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571 37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116 (507)
Q Consensus 37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 116 (507)
+|.|+..|+. ...|.+||..+..- +-.+.. +..| ...--.+..++.+++.|+...
T Consensus 79 DG~LlaaGD~-----sG~V~vfD~k~r~i--LR~~~a-----------h~ap--v~~~~f~~~d~t~l~s~sDd~----- 133 (487)
T KOG0310|consen 79 DGRLLAAGDE-----SGHVKVFDMKSRVI--LRQLYA-----------HQAP--VHVTKFSPQDNTMLVSGSDDK----- 133 (487)
T ss_pred CCeEEEccCC-----cCcEEEeccccHHH--HHHHhh-----------ccCc--eeEEEecccCCeEEEecCCCc-----
Confidence 5777777773 34588899555211 111110 1111 111223345899999987433
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCC-cEEEeecCCCCCCCCCC
Q 010571 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~~~g~~p~~r~~ 195 (507)
.+..+|..+.. ......|.-- .....++...++.|++-||+++. |-.||+.+. .|..--.. ..|.
T Consensus 134 -v~k~~d~s~a~-v~~~l~~htD-YVR~g~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~elnh-g~pV---- 199 (487)
T KOG0310|consen 134 -VVKYWDLSTAY-VQAELSGHTD-YVRCGDISPANDHIVVTGSYDGK------VRLWDTRSLTSRVVELNH-GCPV---- 199 (487)
T ss_pred -eEEEEEcCCcE-EEEEecCCcc-eeEeeccccCCCeEEEecCCCce------EEEEEeccCCceeEEecC-CCce----
Confidence 24455655554 2322222211 22222344567899999998753 777787666 44332211 2222
Q ss_pred ceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcce----EEEEE--CCEEEEEeccCCCCCc
Q 010571 196 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH----AGITI--DENWYIVGGGDNNNGC 268 (507)
Q Consensus 196 ~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~----~~~~~--~~~l~v~GG~~~~~~~ 268 (507)
-.++.+++ ..|...|| |.+-++|+.++ +.++..+..| ++..+ ++.-++-||.+++
T Consensus 200 e~vl~lpsgs~iasAgG-------n~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~--- 261 (487)
T KOG0310|consen 200 ESVLALPSGSLIASAGG-------NSVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH--- 261 (487)
T ss_pred eeEEEcCCCCEEEEcCC-------CeEEEEEecCC--------ceehhhhhcccceEEEEEeecCCceEeecccccc---
Confidence 13444445 55566666 66777777643 2333344434 12222 3456667776554
Q ss_pred ceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC
Q 010571 269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 319 (507)
Q Consensus 269 ~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~ 319 (507)
+-+|| +..|+.+..+.-+.| -+...+.+ ++.-+++|..++
T Consensus 262 --VKVfd--~t~~Kvv~s~~~~~p------vLsiavs~-dd~t~viGmsnG 301 (487)
T KOG0310|consen 262 --VKVFD--TTNYKVVHSWKYPGP------VLSIAVSP-DDQTVVIGMSNG 301 (487)
T ss_pred --eEEEE--ccceEEEEeeecccc------eeeEEecC-CCceEEEecccc
Confidence 67888 444555544422211 22233333 445667787654
No 64
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.60 E-value=0.14 Score=48.21 Aligned_cols=124 Identities=12% Similarity=0.125 Sum_probs=74.6
Q ss_pred EEcccCCCCC--CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEE
Q 010571 105 ILGGHYKKSS--DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWD 181 (507)
Q Consensus 105 v~GG~~~~~~--~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~ 181 (507)
++||.-.... ....+..||+.+.+|..+.. --.+ .-..+... +++||+.|-....+.....+-.||..+.+|.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~---~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN---GISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCC---CceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 4555433322 46789999999999998862 2111 12334444 5678777766544433556899999999999
Q ss_pred EeecC--CCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeee
Q 010571 182 AVEVT--QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236 (507)
Q Consensus 182 ~~~~~--g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 236 (507)
.+... ..+|.+....+........+++.|.. ..-..-+..| ...+|..+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence 88752 24455543222222234457777765 2223446666 4668998743
No 65
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.60 E-value=0.014 Score=62.00 Aligned_cols=99 Identities=19% Similarity=0.304 Sum_probs=61.0
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 470 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e 470 (507)
...|..+.+.++..++..++..++|+.+|..+...-.....+|++.+.++++++.++.++.... ++..+.++.+|++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR---q~DKq~l~~LEkr 496 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQAR---QQDKQSLQQLEKR 496 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4456666666777777777777788888776666555555666666666666666555444322 2333444466666
Q ss_pred HHHHHHhHHHHHHHHHHhhccc
Q 010571 471 VQILRQQKSAFEQEMERATSVQ 492 (507)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
+.+.++++..+|+++.+++...
T Consensus 497 L~eE~~~R~~lEkQL~eErk~r 518 (697)
T PF09726_consen 497 LAEERRQRASLEKQLQEERKAR 518 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666555433
No 66
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.45 E-value=0.054 Score=45.40 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=7.4
Q ss_pred hhhhhHHHHHHhhccchhh
Q 010571 411 ENSRFREKIDEVNSTHSEL 429 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~ 429 (507)
+...|+.+++.++.++...
T Consensus 36 EI~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 36 EITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444333333333
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.33 E-value=0.89 Score=42.22 Aligned_cols=189 Identities=14% Similarity=0.083 Sum_probs=100.8
Q ss_pred CCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571 4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED 81 (507)
Q Consensus 4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~ 81 (507)
..|.+|+....-..+.. |. ..+++.. ++.+|+... ..+.++|+.++.++.+.....
T Consensus 23 ~i~~~~~~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~-------- 80 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDL----PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPD-------- 80 (246)
T ss_dssp EEEEEETTTTEEEEEES----SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEET--------
T ss_pred EEEEEECCCCeEEEEec----CC---CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccC--------
Confidence 35677777776655542 22 2333333 677777754 345677999999988876531
Q ss_pred CCccCCCCCccceeeEEECCEEEEEcccCCCCCCc--ceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CC-EEEEE
Q 010571 82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS--MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIF 157 (507)
Q Consensus 82 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~l~~~ 157 (507)
...+..+..-.++.-++.||+.--........ ..++++++. ++...+.. .+. .. ..++.- ++ .||+.
T Consensus 81 ---~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~--~p-NGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 81 ---GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLG--FP-NGIAFSPDGKTLYVA 151 (246)
T ss_dssp ---TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EES--SE-EEEEEETTSSEEEEE
T ss_pred ---CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccc--cc-cceEECCcchheeec
Confidence 01123344444555578888754322222212 579999999 66665542 111 11 123332 33 56663
Q ss_pred cCcCCCCCccCcEEEEEcCC--CcEEEeecCCCCCCCC-CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571 158 GGEDRSRKLLNDVHFLDLET--MTWDAVEVTQTPPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 158 GG~~~~~~~~~~~~~~d~~t--~~W~~~~~~g~~p~~r-~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~ 234 (507)
-- ..+.++.|++.. ..+.........+... .--.+++-.++.||+..-. .+.|++||+.......+
T Consensus 152 ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 152 DS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREI 220 (246)
T ss_dssp ET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEE
T ss_pred cc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEE
Confidence 21 345699999863 3344433221222221 1224555567778886321 15799999985555555
No 68
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.26 E-value=0.028 Score=59.77 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=9.1
Q ss_pred eEEEECCCCceeEeeec
Q 010571 55 VQVFDLRSLAWSNLRLE 71 (507)
Q Consensus 55 ~~~~d~~t~~W~~~~~~ 71 (507)
+++|--.+-+|..++.+
T Consensus 129 ~~~~~e~~~~~~~~~~~ 145 (697)
T PF09726_consen 129 LFVYVEASVRLKDLKSM 145 (697)
T ss_pred HHHHHHHHHhhcccCCC
Confidence 44555555566655543
No 69
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.20 E-value=0.13 Score=48.38 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=71.6
Q ss_pred EEcCc-CCCCC-ccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc-CCCcEEEEECCCCcEE
Q 010571 156 IFGGE-DRSRK-LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWS 232 (507)
Q Consensus 156 ~~GG~-~~~~~-~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~-~~~~i~~~d~~~~~W~ 232 (507)
++||. ...+. .++.+=.||+.+.+|..+... ..+. -..+....++.||+.|-...+. ....+-.||..+.+|.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~---i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNG---ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCC---ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 34553 43333 578899999999999988631 1111 1223334567677777654433 4566899999999998
Q ss_pred eeeec--CCCCCCCcceEEEEEC-CEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571 233 QPEIK--GDLVTGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 233 ~~~~~--~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 286 (507)
.+... ..+|.|-........+ +.+++.|.. .....-+..| +..+|..+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence 87541 2355553222222223 356666654 2222234444 5778988765
No 70
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.17 E-value=0.46 Score=46.52 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=72.2
Q ss_pred cccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeE-E-E-CCEEE
Q 010571 28 RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMV-K-W-GTKLL 104 (507)
Q Consensus 28 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~-~-~~~iy 104 (507)
-.-++++..+.-.|++||. ...++|++.+.|+.--.+-. +.+..-.+ . . ++..+
T Consensus 82 g~v~al~s~n~G~~l~ag~----i~g~lYlWelssG~LL~v~~-------------------aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGT----ISGNLYLWELSSGILLNVLS-------------------AHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cceeeeecCCCceEEEeec----ccCcEEEEEeccccHHHHHH-------------------hhccceeEEEEeCCCcEE
Confidence 3456677777778888872 23468899888886432221 11111111 1 1 67777
Q ss_pred EEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCC-cccceEEEECCEEEEEcCcCCC---CCccCcEEEEEcCCCcE
Q 010571 105 ILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRS---RKLLNDVHFLDLETMTW 180 (507)
Q Consensus 105 v~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~-r~~~~~~~~~~~l~~~GG~~~~---~~~~~~~~~~d~~t~~W 180 (507)
+.||.++. |.+|.+.+-- .......+.|.. ...|++.. -+--.=+||.+.- ...-..+-+||+..+.-
T Consensus 139 iTgskDg~------V~vW~l~~lv-~a~~~~~~~p~~~f~~HtlsI-TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 139 ITGSKDGA------VLVWLLTDLV-SADNDHSVKPLHIFSDHTLSI-TDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred EecCCCcc------EEEEEEEeec-ccccCCCccceeeeccCccee-EEEEecCCCccceEEEecCCceEEEEEecccee
Confidence 77775443 4444322210 000000122222 12233322 2222223432210 01123577788877743
Q ss_pred EEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc
Q 010571 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI 216 (507)
Q Consensus 181 ~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~ 216 (507)
-.- ...|+.-+++++-..++.+.+|+..+..
T Consensus 211 Llt-----i~fp~si~av~lDpae~~~yiGt~~G~I 241 (476)
T KOG0646|consen 211 LLT-----ITFPSSIKAVALDPAERVVYIGTEEGKI 241 (476)
T ss_pred eEE-----EecCCcceeEEEcccccEEEecCCcceE
Confidence 221 2234555667766666677777766543
No 71
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.10 E-value=0.078 Score=44.46 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=10.2
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHHHHHHH
Q 010571 433 LSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
+..++..++.++..+.+++..+.+....
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 72
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.03 E-value=0.094 Score=53.25 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=12.8
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHHHHHHHH
Q 010571 433 LSSVQGQLVAERSRCFKLEAQIAELQKML 461 (507)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~e~~~~e~~~~~ 461 (507)
...+..++...+.++.++++.+..+.++.
T Consensus 208 ~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 208 RESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334445555555554444443
No 73
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.02 E-value=2 Score=43.38 Aligned_cols=184 Identities=10% Similarity=-0.001 Sum_probs=92.9
Q ss_pred CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~ 131 (507)
..++++|+.++.-..+..... .... ....-+ +.|++...... ...++.+|+.++....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~----------------~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~ 272 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG----------------MNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTR 272 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC----------------Cccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEE
Confidence 569999999887655443221 1111 112223 45665533221 3469999999887776
Q ss_pred eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571 132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 210 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G 210 (507)
+... +..... ....-++ +|++...... ...++.+|+.+..+..+...+ ..........++..+++.
T Consensus 273 l~~~---~~~~~~-~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 273 LTNG---PGIDTE-PSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFV 339 (417)
T ss_pred CCCC---CCCCCC-EEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEE
Confidence 6421 111111 1111233 5555433221 247999999988887775322 222233334455455555
Q ss_pred CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcC
Q 010571 211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL 279 (507)
Q Consensus 211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~ 279 (507)
.... ....++.+|+.+..++.+.... .........++..+++....+. ...+++++....
T Consensus 340 ~~~~--~~~~i~~~d~~~~~~~~l~~~~-----~~~~p~~spdg~~l~~~~~~~~--~~~l~~~~~~g~ 399 (417)
T TIGR02800 340 HREG--GGFNIAVMDLDGGGERVLTDTG-----LDESPSFAPNGRMILYATTRGG--RGVLGLVSTDGR 399 (417)
T ss_pred EccC--CceEEEEEeCCCCCeEEccCCC-----CCCCceECCCCCEEEEEEeCCC--cEEEEEEECCCc
Confidence 4432 2347999999887766553211 1111223335554444432221 235666665443
No 74
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.74 E-value=2.8 Score=42.77 Aligned_cols=192 Identities=9% Similarity=0.004 Sum_probs=96.0
Q ss_pred CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~ 131 (507)
..++++|+.++....+.... .........-+ .+|++...... ..+++.+|+.++....
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP-----------------GMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTR 284 (435)
T ss_pred CEEEEEECCCCcEEEeecCC-----------------CcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEE
Confidence 57999999998876665332 11111122223 45544432221 3469999999987776
Q ss_pred eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571 132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 210 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G 210 (507)
+.. .+.. .......-++ +|++.....+ ...++.+|+.+.....+... .... .......++..+++.
T Consensus 285 Lt~---~~~~-~~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~----~~~~-~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 285 LTD---SPAI-DTSPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFG----GGRY-STPVWSPRGDLIAFT 351 (435)
T ss_pred ccC---CCCc-cCceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecC----CCcc-cCeEECCCCCEEEEE
Confidence 642 1211 1111122233 4544322211 34799999988777766521 1111 122233343333333
Q ss_pred CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCC-cceEEEEEcCcCeeEEec
Q 010571 211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG-CQETIVLNMTKLAWSILT 285 (507)
Q Consensus 211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~-~~d~~~~d~~~~~W~~~~ 285 (507)
..... ...++.+|+.+...+.+.. + .........-+++.+++-....... ...++++|++...-..++
T Consensus 352 ~~~~~--~~~i~~~d~~~~~~~~lt~-~----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 352 KQGGG--QFSIGVMKPDGSGERILTS-G----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EcCCC--ceEEEEEECCCCceEeccC-C----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 22211 2478899987766655421 1 1112222333555555543322211 246899998877666554
No 75
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.71 E-value=0.2 Score=44.65 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=17.4
Q ss_pred hHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHH
Q 010571 415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 458 (507)
Q Consensus 415 l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~ 458 (507)
+...+...+.......++++..++.++..++...++..++.++.
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444444444444
No 76
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.71 E-value=1.7 Score=40.22 Aligned_cols=202 Identities=16% Similarity=0.112 Sum_probs=110.4
Q ss_pred eeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEE
Q 010571 94 HCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF 172 (507)
Q Consensus 94 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~ 172 (507)
-.... .++.||.--|..+. +.+..+|+.|++-.... ++|..-.+=.++.++++||..--. .+..+.
T Consensus 48 QGL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~ 114 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------EGTGFV 114 (264)
T ss_dssp EEEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------SSEEEE
T ss_pred ccEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------CCeEEE
Confidence 34444 57888887776653 46999999999876655 677777777899999999998654 446899
Q ss_pred EEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eeec-CCCCCCCcceEEE
Q 010571 173 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIK-GDLVTGRAGHAGI 250 (507)
Q Consensus 173 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~-~~~p~~r~~~~~~ 250 (507)
||..+.+ .+. ..+.+..+-+++.. +..|++.-|. +.++.+||.+..-.. +.+. ...|..+-. -+-
T Consensus 115 yd~~tl~--~~~---~~~y~~EGWGLt~d-g~~Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN-ELE 181 (264)
T PF05096_consen 115 YDPNTLK--KIG---TFPYPGEGWGLTSD-GKRLIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSNLN-ELE 181 (264)
T ss_dssp EETTTTE--EEE---EEE-SSS--EEEEC-SSCEEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE---EE-EEE
T ss_pred Eccccce--EEE---EEecCCcceEEEcC-CCEEEEECCc------cceEEECCcccceEEEEEEEECCEECCCcE-eEE
Confidence 9998643 332 22334567777754 5558888774 679999998764333 2221 112222211 233
Q ss_pred EECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCC--------CCCCCCCceEEEEEcCceEEEEEcccCCCcC
Q 010571 251 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN--------PLASEGLSVCSAIIEGEHHLVAFGGYNGKYN 322 (507)
Q Consensus 251 ~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~--------p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~ 322 (507)
.+++.||.= --..+.+.+.|+.++.-..+-++.+.. ..+.....-..+..+..+.++|.|= ..
T Consensus 182 ~i~G~IyAN-----VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK----~W 252 (264)
T PF05096_consen 182 YINGKIYAN-----VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK----LW 252 (264)
T ss_dssp EETTEEEEE-----ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET----T-
T ss_pred EEcCEEEEE-----eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC----CC
Confidence 345555421 112356889999998754432221110 0111222223333345678888764 34
Q ss_pred CeEEEEEC
Q 010571 323 NEVFVMRL 330 (507)
Q Consensus 323 ~~v~~~~~ 330 (507)
..+|...+
T Consensus 253 p~lyeV~l 260 (264)
T PF05096_consen 253 PKLYEVKL 260 (264)
T ss_dssp SEEEEEEE
T ss_pred CceEEEEE
Confidence 55655543
No 77
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.62 E-value=3.5 Score=43.09 Aligned_cols=130 Identities=13% Similarity=0.068 Sum_probs=70.4
Q ss_pred ceEEEECCEEEEEcCCCCCccCCceEEEECCCC--ceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcc
Q 010571 31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG 108 (507)
Q Consensus 31 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG 108 (507)
.+-++.++.||+... ...++.+|..|+ .|+.-...... .. ............+..+++||+...
T Consensus 63 stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~-----~~---~~~~~~~~~rg~av~~~~v~v~t~ 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDD-----VI---PVMCCDVVNRGVALYDGKVFFGTL 128 (527)
T ss_pred cCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcc-----cc---cccccccccccceEECCEEEEEcC
Confidence 445667899998654 236999999987 48764432110 00 000001122334566888887432
Q ss_pred cCCCCCCcceEEEEECCCCc--EEEeecCCCCCCC-cccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEe
Q 010571 109 HYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV 183 (507)
Q Consensus 109 ~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~ 183 (507)
...++.+|..|++ |+... ...... ....+-++.++.||+-..... ......+..||..|++ |+.-
T Consensus 129 -------dg~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 129 -------DARLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred -------CCEEEEEECCCCCEEeeccc--ccccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEecc
Confidence 2348999998874 66532 122111 112234456777776432211 1123469999998875 7655
Q ss_pred e
Q 010571 184 E 184 (507)
Q Consensus 184 ~ 184 (507)
.
T Consensus 199 ~ 199 (527)
T TIGR03075 199 T 199 (527)
T ss_pred C
Confidence 4
No 78
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.56 E-value=0.4 Score=39.71 Aligned_cols=78 Identities=13% Similarity=0.216 Sum_probs=46.3
Q ss_pred hhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
...+..+..+....+..+.....+.+..+..++.++.+++....++.....++...++.-..+.+.+++++++...+.
T Consensus 23 e~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 23 EDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555556666666666666666666666666666666665555555555555555555554
No 79
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.51 E-value=0.19 Score=48.05 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=6.8
Q ss_pred HHHHHHHhHHHHHHHHH
Q 010571 470 EVQILRQQKSAFEQEME 486 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~ 486 (507)
.++....+++.++.++.
T Consensus 240 ~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 240 KIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444443
No 80
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.49 E-value=0.14 Score=49.88 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=10.1
Q ss_pred ceEEEEEcCcC-eeEEe
Q 010571 269 QETIVLNMTKL-AWSIL 284 (507)
Q Consensus 269 ~d~~~~d~~~~-~W~~~ 284 (507)
..+|.+++.+. .|...
T Consensus 267 ~H~yalel~tqrVWDYA 283 (493)
T KOG0804|consen 267 GHCYALELETQRVWDYA 283 (493)
T ss_pred cceEEEeecceeeeecc
Confidence 35777777665 47654
No 81
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.46 E-value=0.57 Score=45.93 Aligned_cols=154 Identities=17% Similarity=0.151 Sum_probs=86.8
Q ss_pred CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571 37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116 (507)
Q Consensus 37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 116 (507)
.--+.+.+|.++. -.+|..|-.++. .+..+.- .-.|......+..|....+++|..
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l-------------~~fPi~~a~f~p~G~~~i~~s~rr------ 279 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHL-------------EKFPIQKAEFAPNGHSVIFTSGRR------ 279 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeee-------------ccCccceeeecCCCceEEEecccc------
Confidence 5568888886633 124444444444 2222210 011233333333344377777753
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010571 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 196 (507)
Q Consensus 117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~ 196 (507)
.-++.||+.+.+-.++.+...++......--+...+.++++-|.. .-|+.+...|+.|..-- .++.....+
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~---KieG~v~~~ 350 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSF---KIEGVVSDF 350 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhhee---eeccEEeeE
Confidence 248999999999988875444443222223344455566666643 35888888888875432 223223333
Q ss_pred eEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571 197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 230 (507)
Q Consensus 197 ~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~ 230 (507)
+... .+..|++.||.+ .+|++|+.++.
T Consensus 351 ~fsS-dsk~l~~~~~~G------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 351 TFSS-DSKELLASGGTG------EVYVWNLRQNS 377 (514)
T ss_pred EEec-CCcEEEEEcCCc------eEEEEecCCcc
Confidence 3332 345688888863 69999998874
No 82
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.42 E-value=0.26 Score=47.86 Aligned_cols=12 Identities=33% Similarity=0.338 Sum_probs=4.4
Q ss_pred HHHHhHHHHHHH
Q 010571 473 ILRQQKSAFEQE 484 (507)
Q Consensus 473 ~~~~~~~~~~~~ 484 (507)
.+..+++.++.+
T Consensus 248 ~~~~~k~~l~~e 259 (325)
T PF08317_consen 248 ELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 83
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.15 Score=51.78 Aligned_cols=79 Identities=14% Similarity=0.300 Sum_probs=37.2
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhHHHHHH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA-------ELQKMLESSQTIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~-------e~~~~~~~~~~~e~e~~~~~~~~~~~~~ 483 (507)
+..++...++.+++++.+++.++.+.+.++++++.++..+...+. |++........|++++++..+..++|+.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554444444333332 2222223333455555555555555666
Q ss_pred HHHHhh
Q 010571 484 EMERAT 489 (507)
Q Consensus 484 ~~~~~~ 489 (507)
.+.+++
T Consensus 503 ~l~~l~ 508 (652)
T COG2433 503 KLAELR 508 (652)
T ss_pred HHHHHH
Confidence 655444
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.31 E-value=0.2 Score=48.71 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhHHHHHH
Q 010571 467 IENEVQILRQQKSAFEQ 483 (507)
Q Consensus 467 ~e~e~~~~~~~~~~~~~ 483 (507)
+..++++++.+++.+++
T Consensus 249 ~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 249 LEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 85
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.28 E-value=0.12 Score=49.81 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=17.9
Q ss_pred hhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHH
Q 010571 413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA 455 (507)
Q Consensus 413 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~ 455 (507)
..+.++++.++.+.+++.+++++.+.+.+.+.+++.+++.+..
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333333333333
No 86
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.27 E-value=4 Score=41.58 Aligned_cols=188 Identities=10% Similarity=0.038 Sum_probs=95.5
Q ss_pred CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~ 131 (507)
..++++|+.++.-..+.... .........- +.+|++...... ..+++++|+.++....
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~-----------------g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR-----------------GINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTR 286 (433)
T ss_pred cEEEEEECCCCCEEEeccCC-----------------CCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEE
Confidence 56899999888766554322 1111111222 345554432221 2469999999987666
Q ss_pred eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcC-cEEEEE
Q 010571 132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVF 209 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~i~ 209 (507)
+.. .+. ........-++ +|++.....+ ...++.+|+.+++...+...+ ..........+ +.|++.
T Consensus 287 lt~---~~~-~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 287 LTN---HFG-IDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMV 353 (433)
T ss_pred Ccc---CCC-CccceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEE
Confidence 542 111 11111112234 4554432221 246999999888887775322 12222333334 445444
Q ss_pred eCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEe
Q 010571 210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284 (507)
Q Consensus 210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~ 284 (507)
.+.+ + ...++++|+.++..+.+.. +. ........-+++.+++.... .....++.++.+...=..+
T Consensus 354 ~~~~-~--~~~I~v~d~~~g~~~~Lt~-~~----~~~~p~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 354 HGSG-G--QYRIAVMDLSTGSVRTLTP-GS----LDESPSFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred ECCC-C--ceeEEEEECCCCCeEECCC-CC----CCCCceECCCCCEEEEEEec--CCceEEEEEECCCCceEEc
Confidence 3321 1 1378999998888876532 11 11112233356665554432 1234688888765443333
No 87
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.23 E-value=4.2 Score=41.62 Aligned_cols=187 Identities=9% Similarity=0.040 Sum_probs=95.0
Q ss_pred CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~ 131 (507)
..++++|+.++.-..+.... .........- ++.|++...... ..+++.+|+.++..+.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~-----------------g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP-----------------GINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTR 300 (448)
T ss_pred cEEEEEECCCCCeEEecCCC-----------------CCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEE
Confidence 57999999888765554322 1111111222 445655532221 3469999999998877
Q ss_pred eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571 132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 210 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G 210 (507)
+... . .........-++ .|++...... ...++.+|+.++++..+...+. .....+...++..++|.
T Consensus 301 lt~~---~-~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 301 ITRH---R-AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE-----QNLGGSITPDGRSMIMV 367 (448)
T ss_pred CccC---C-CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC-----CCcCeeECCCCCEEEEE
Confidence 6521 1 111111112233 5555432221 2479999999999888753221 11222333344344443
Q ss_pred CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEE
Q 010571 211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI 283 (507)
Q Consensus 211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~ 283 (507)
+.... ...++.+|+.++..+.+... . .. .......+++.+++....+ ....+++++.+ ..+..
T Consensus 368 ~~~~g--~~~I~~~dl~~g~~~~lt~~-~--~d--~~ps~spdG~~I~~~~~~~--g~~~l~~~~~~-G~~~~ 430 (448)
T PRK04792 368 NRTNG--KFNIARQDLETGAMQVLTST-R--LD--ESPSVAPNGTMVIYSTTYQ--GKQVLAAVSID-GRFKA 430 (448)
T ss_pred EecCC--ceEEEEEECCCCCeEEccCC-C--CC--CCceECCCCCEEEEEEecC--CceEEEEEECC-CCceE
Confidence 33221 24689999999887765321 1 11 1112333555555543222 22357777764 33433
No 88
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.22 E-value=0.3 Score=47.66 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=7.2
Q ss_pred hHHhHHHHHhhHhhhhhhh
Q 010571 429 LSKELSSVQGQLVAERSRC 447 (507)
Q Consensus 429 ~~~e~~~~~~~~~~~~~~~ 447 (507)
.+.+.+.+...+++.+.++
T Consensus 373 ~e~~kk~~e~k~~q~q~k~ 391 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKL 391 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 89
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.18 E-value=0.31 Score=49.01 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcccc--cCCCceee
Q 010571 466 TIENEVQILRQQKSAFEQEMERATSVQT--QGSGGVWR 501 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 501 (507)
.|..++..+.+.-.++.++-..+..+.+ .+-+|.||
T Consensus 169 ~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WG 206 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWG 206 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchH
Confidence 3444444444444444444444443333 36789997
No 90
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.06 E-value=4.4 Score=40.89 Aligned_cols=147 Identities=13% Similarity=0.123 Sum_probs=77.9
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~ 195 (507)
..++++|+.++.-..+. ..+..... ....-++ .|++....+. ..+++.+|+.+.....+..... . .
T Consensus 214 ~~i~v~d~~~g~~~~~~---~~~~~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~---~--~ 280 (417)
T TIGR02800 214 PEIYVQDLATGQREKVA---SFPGMNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPG---I--D 280 (417)
T ss_pred cEEEEEECCCCCEEEee---cCCCCccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCC---C--C
Confidence 46999999988766654 22222111 1112233 5655443221 3479999999888776653211 1 1
Q ss_pred ceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEE
Q 010571 196 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 274 (507)
Q Consensus 196 ~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 274 (507)
.......+ ..|++.....+ ...+|.+|+.+..+..+...+. ........-+++.+++..... ....++++
T Consensus 281 ~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~~----~~~~~~~spdg~~i~~~~~~~--~~~~i~~~ 351 (417)
T TIGR02800 281 TEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRGG----YNASPSWSPDGDLIAFVHREG--GGFNIAVM 351 (417)
T ss_pred CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCCC----CccCeEECCCCCEEEEEEccC--CceEEEEE
Confidence 11122233 44444333222 2479999998888877642211 111112222455555554332 23478999
Q ss_pred EcCcCeeEEec
Q 010571 275 NMTKLAWSILT 285 (507)
Q Consensus 275 d~~~~~W~~~~ 285 (507)
|+.+..+..+.
T Consensus 352 d~~~~~~~~l~ 362 (417)
T TIGR02800 352 DLDGGGERVLT 362 (417)
T ss_pred eCCCCCeEEcc
Confidence 99887776654
No 91
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.05 E-value=4.7 Score=41.11 Aligned_cols=189 Identities=17% Similarity=0.118 Sum_probs=92.1
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010571 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 196 (507)
Q Consensus 117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~ 196 (507)
..++++|+.++....+. ..+..........-+..|++....+. ..+++.+|+.++....+... +. . ..
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~~-~-~~ 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---PA-I-DT 293 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---CC-c-cC
Confidence 46999999999887765 22222221111112335554433222 34799999998887666421 11 1 11
Q ss_pred eEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEc
Q 010571 197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM 276 (507)
Q Consensus 197 ~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~ 276 (507)
......++.-++|...... ...+|++|+.+...+.+... ..........-+++.+++..... ....++++|+
T Consensus 294 ~~~~spDG~~i~f~s~~~g--~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~--~~~~i~~~d~ 365 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSG--SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGG--GQFSIGVMKP 365 (435)
T ss_pred ceeEcCCCCEEEEEECCCC--CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCC--CceEEEEEEC
Confidence 1223334433334332111 25799999888777766321 11111112223444444432211 1246888998
Q ss_pred CcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCc-CCeEEEEECCCCC
Q 010571 277 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKY-NNEVFVMRLKPRD 334 (507)
Q Consensus 277 ~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~v~~~~~~~~~ 334 (507)
.+.....+.... . .......+++..|+......+.. ...+|.+++....
T Consensus 366 ~~~~~~~lt~~~--------~-~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 366 DGSGERILTSGF--------L-VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCceEeccCCC--------C-CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 776655543211 0 01111233344444433322221 2578999986543
No 92
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.05 E-value=3.2 Score=39.23 Aligned_cols=263 Identities=17% Similarity=0.180 Sum_probs=118.6
Q ss_pred CCCCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcc
Q 010571 2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT 79 (507)
Q Consensus 2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~ 79 (507)
|...+.||+.++.-...-..+ ..++ +++.. +..+|+.++. .+.+.+||+.++.....-...
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~--~~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~------- 72 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVG--QRPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGTLPSG------- 72 (300)
T ss_pred CCEEEEEECCCCceEEEEECC--CCCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEeccCC-------
Confidence 445678888776643332111 1122 23332 4457777652 345889999887654321111
Q ss_pred ccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEE-ECCEEEEE
Q 010571 80 EDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIF 157 (507)
Q Consensus 80 ~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~l~~~ 157 (507)
..+ ...+..- ++.+|+.++. ...+.+||+.+..-... .+......+++. -++.++++
T Consensus 73 --------~~~--~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~ 131 (300)
T TIGR03866 73 --------PDP--ELFALHPNGKILYIANED------DNLVTVIDIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVN 131 (300)
T ss_pred --------CCc--cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeE-----eeCCCCcceEEECCCCCEEEE
Confidence 001 1122222 4456666542 23588999987642221 111111122222 24566666
Q ss_pred cCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eee
Q 010571 158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEI 236 (507)
Q Consensus 158 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~ 236 (507)
+..+ .+.+..||..+..-......+..| ..+....++..+++++... +.+.+||+.+..... +..
T Consensus 132 ~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 132 TSET-----TNMAHFIDTKTYEIVDNVLVDQRP-----RFAEFTADGKELWVSSEIG----GTVSVIDVATRKVIKKITF 197 (300)
T ss_pred EecC-----CCeEEEEeCCCCeEEEEEEcCCCc-----cEEEECCCCCEEEEEcCCC----CEEEEEEcCcceeeeeeee
Confidence 5432 124667787765443221111111 1233333444444444322 458899988765422 211
Q ss_pred c-CCCCCCCcceEEEEE--CC-EEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEE
Q 010571 237 K-GDLVTGRAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLV 312 (507)
Q Consensus 237 ~-~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 312 (507)
. +..+........+.+ ++ .+|+..+.+ +.+.+||..+..- +...... +...+....+++..|+
T Consensus 198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~d~~~~~~--~~~~~~~------~~~~~~~~~~~g~~l~ 264 (300)
T TIGR03866 198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVVDAKTYEV--LDYLLVG------QRVWQLAFTPDEKYLL 264 (300)
T ss_pred cccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEEECCCCcE--EEEEEeC------CCcceEEECCCCCEEE
Confidence 1 111111111112223 33 345543322 2578888865433 2221110 1112223334445666
Q ss_pred EEcccCCCcCCeEEEEECCCC
Q 010571 313 AFGGYNGKYNNEVFVMRLKPR 333 (507)
Q Consensus 313 v~GG~~~~~~~~v~~~~~~~~ 333 (507)
+..+. .+++.++|+...
T Consensus 265 ~~~~~----~~~i~v~d~~~~ 281 (300)
T TIGR03866 265 TTNGV----SNDVSVIDVAAL 281 (300)
T ss_pred EEcCC----CCeEEEEECCCC
Confidence 54443 346888888664
No 93
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.97 E-value=0.36 Score=49.15 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=16.0
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL 429 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 429 (507)
++.++.++.++.........+...|+..++.++.++...
T Consensus 145 lE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~ 183 (546)
T PF07888_consen 145 LEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQE 183 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333334444444444444444433
No 94
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.95 E-value=1.7 Score=42.83 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=82.4
Q ss_pred CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccc--eEEEECC-EEEEEcCcCCCCCccCcEEEEEcC
Q 010571 100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH--SVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLE 176 (507)
Q Consensus 100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~--~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~ 176 (507)
.--|.+.+|.+..- .++..|-.++. .+. ++-..+.-. ++..-++ ..++++|+ -.-+|.||+.
T Consensus 224 ~~plllvaG~d~~l----rifqvDGk~N~--~lq---S~~l~~fPi~~a~f~p~G~~~i~~s~r------rky~ysyDle 288 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTL----RIFQVDGKVNP--KLQ---SIHLEKFPIQKAEFAPNGHSVIFTSGR------RKYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCcE----EEEEecCccCh--hhe---eeeeccCccceeeecCCCceEEEeccc------ceEEEEeecc
Confidence 45688888876532 36666666654 222 222111111 1112244 47777775 3458999999
Q ss_pred CCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEE
Q 010571 177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW 256 (507)
Q Consensus 177 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l 256 (507)
+.+-+.+.+....+ .++.+...+..++.++++-|..+ -|+.+...|+.|..- -.++.....++...-+..|
T Consensus 289 ~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s---~KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITS---FKIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred ccccccccCCCCcc-cchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhhe---eeeccEEeeEEEecCCcEE
Confidence 99999987655444 23333343333444666666432 377777777777541 1122222222222223457
Q ss_pred EEEeccCCCCCcceEEEEEcCcCe
Q 010571 257 YIVGGGDNNNGCQETIVLNMTKLA 280 (507)
Q Consensus 257 ~v~GG~~~~~~~~d~~~~d~~~~~ 280 (507)
+++||.. .+|++|+..+.
T Consensus 360 ~~~~~~G------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 360 LASGGTG------EVYVWNLRQNS 377 (514)
T ss_pred EEEcCCc------eEEEEecCCcc
Confidence 7776632 69999998873
No 95
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.94 E-value=0.14 Score=44.78 Aligned_cols=71 Identities=21% Similarity=0.387 Sum_probs=41.5
Q ss_pred HHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHh
Q 010571 407 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQ 477 (507)
Q Consensus 407 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~ 477 (507)
..+....+++.++++...+++++.+++++.+.+++..++++..++.+...++++++... .|++...++...
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 33445556666666666666666666666666666666666666655555555444333 444444444443
No 96
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.92 E-value=0.68 Score=39.40 Aligned_cols=89 Identities=18% Similarity=0.295 Sum_probs=54.5
Q ss_pred HHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHH
Q 010571 401 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKS 479 (507)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~~e~e~~~~~~~~~ 479 (507)
+...+.....+...++..++.++.++++.++++...+.....++.++..++..+...++++++.. .++.-..+...++-
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556667777777777777777777766666666666666666666666666666655 34444455555555
Q ss_pred HHHHHHHHhh
Q 010571 480 AFEQEMERAT 489 (507)
Q Consensus 480 ~~~~~~~~~~ 489 (507)
..+.|++.++
T Consensus 137 kke~E~~kLk 146 (151)
T PF11559_consen 137 KKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 97
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.91 E-value=0.5 Score=45.30 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHHHHHH
Q 010571 467 IENEVQILRQQKSAFEQ 483 (507)
Q Consensus 467 ~e~e~~~~~~~~~~~~~ 483 (507)
..+++++++.++..++.
T Consensus 244 ~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 244 LTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 98
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.89 E-value=3.2 Score=38.46 Aligned_cols=200 Identities=17% Similarity=0.161 Sum_probs=107.1
Q ss_pred CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571 37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS 114 (507)
Q Consensus 37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 114 (507)
++.||+..- ....++.+|+.++.-..+... . -.+++.. ++.+|+....
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~------------------~--~~G~~~~~~~g~l~v~~~~----- 60 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLP------------------G--PNGMAFDRPDGRLYVADSG----- 60 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESS------------------S--EEEEEEECTTSEEEEEETT-----
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecC------------------C--CceEEEEccCCEEEEEEcC-----
Confidence 567777733 235799999999876554432 2 2334443 6888887542
Q ss_pred CcceEEEEECCCCcEEEeecC--CCCCCCcccceEEEECCEEEEEcCcCCCCCcc--CcEEEEEcCCCcEEEeecCCCCC
Q 010571 115 DSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL--NDVHFLDLETMTWDAVEVTQTPP 190 (507)
Q Consensus 115 ~~~~~~~~d~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~--~~~~~~d~~t~~W~~~~~~g~~p 190 (507)
.+.++|+.+++++.+... +..+..+.+-.++.-++.+|+---........ ..++++++. .+...+... +
T Consensus 61 ---~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~- 133 (246)
T PF08450_consen 61 ---GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L- 133 (246)
T ss_dssp ---CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E-
T ss_pred ---ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c-
Confidence 256779999999888742 11133333333333356766642221111112 569999998 666555421 1
Q ss_pred CCCCCceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECCC--CcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCC
Q 010571 191 APRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNN 265 (507)
Q Consensus 191 ~~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~ 265 (507)
..-.+++...++ .||+.-- ..+.|+.|++.. ..+.........+......-...+ +++||+..-.
T Consensus 134 --~~pNGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~--- 203 (246)
T PF08450_consen 134 --GFPNGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG--- 203 (246)
T ss_dssp --SSEEEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---
T ss_pred --ccccceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---
Confidence 111345555554 5666432 235699999863 334433221122222222334444 5788886321
Q ss_pred CCcceEEEEEcCcCeeEEec
Q 010571 266 NGCQETIVLNMTKLAWSILT 285 (507)
Q Consensus 266 ~~~~d~~~~d~~~~~W~~~~ 285 (507)
...+++||+....-..+.
T Consensus 204 --~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 204 --GGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp --TTEEEEEETTSCEEEEEE
T ss_pred --CCEEEEECCCccEEEEEc
Confidence 226899999966555554
No 99
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.86 E-value=0.67 Score=41.44 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 010571 467 IENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 467 ~e~e~~~~~~~~~~~~~~~~~ 487 (507)
++-+.+.+.++..++++|.++
T Consensus 105 Lk~e~evL~qr~~kle~Erde 125 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDE 125 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445544443
No 100
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.81 E-value=5.5 Score=40.77 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=79.9
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571 116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~ 195 (507)
...++++|+.+++-..+. ..+..........-+..|++....++ ..+++.+|+.+++...+.... . ..
T Consensus 241 ~~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~----~-~~ 308 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR----A-ID 308 (448)
T ss_pred CcEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC----C-Cc
Confidence 346999999988766664 22221111111112345665543322 347999999999887765311 1 11
Q ss_pred ceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEE
Q 010571 196 HSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 274 (507)
Q Consensus 196 ~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 274 (507)
...+...++ .|++.....+ ...+|.+|+.++.++.+...+.. .......-+++.+++.+... ....++++
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~--g~~~I~~~ 379 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTN--GKFNIARQ 379 (448)
T ss_pred cceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEecC--CceEEEEE
Confidence 122233343 4444332222 25799999999988876422211 11122233444444443222 23478999
Q ss_pred EcCcCeeEEec
Q 010571 275 NMTKLAWSILT 285 (507)
Q Consensus 275 d~~~~~W~~~~ 285 (507)
|+.+.....+.
T Consensus 380 dl~~g~~~~lt 390 (448)
T PRK04792 380 DLETGAMQVLT 390 (448)
T ss_pred ECCCCCeEEcc
Confidence 99988877664
No 101
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.77 E-value=4.3 Score=40.97 Aligned_cols=251 Identities=16% Similarity=0.099 Sum_probs=124.6
Q ss_pred CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCC--
Q 010571 37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKK-- 112 (507)
Q Consensus 37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~-- 112 (507)
++..++++=..++.-...+.++|+.++....-.. ....++.+.. +++.+++......
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------------------~~~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------------------ENPKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------------------EEEESEEEEECTTSSEEEEEECSTTTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------------------cccccceEEEeCCCCEEEEEEeCcccc
Confidence 4555555533333334569999999995432111 1222221333 3345554443332
Q ss_pred ---CCCcceEEEEECCCCcEE--EeecCCCCCCCcc-cceEEEE-C-CEEEEEcCcCCCCCccCcEEEEEcCCC-----c
Q 010571 113 ---SSDSMIVRFIDLETNLCG--VMETSGKVPVARG-GHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETM-----T 179 (507)
Q Consensus 113 ---~~~~~~~~~~d~~t~~W~--~~~~~g~~p~~r~-~~~~~~~-~-~~l~~~GG~~~~~~~~~~~~~~d~~t~-----~ 179 (507)
......++.....+..-. .+- ..+.... ...+..- + ..|++.-+.... .++++.+|+... .
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-S
T ss_pred cccCCCCcEEEEEECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCC
Confidence 123557888888776543 222 2222222 2222222 3 355554333211 368999999875 7
Q ss_pred EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc---EEeeeecCCCCCCC-cceEEEEECCE
Q 010571 180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGR-AGHAGITIDEN 255 (507)
Q Consensus 180 W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r-~~~~~~~~~~~ 255 (507)
|..+... .. ..+..+...++.+||... .+.....+..+++.... |..+-. .+... .--.+.+.++.
T Consensus 269 ~~~l~~~----~~-~~~~~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~ 338 (414)
T PF02897_consen 269 PKLLSPR----ED-GVEYYVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDY 338 (414)
T ss_dssp EEEEEES----SS-S-EEEEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTE
T ss_pred cEEEeCC----CC-ceEEEEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECCE
Confidence 8888631 11 112223233666887665 23344678889988765 764321 11121 22344455788
Q ss_pred EEEEeccCCCCCcceEEEEEcC-cCeeEEeccCCCCCCCCCCCCceEEEE--EcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571 256 WYIVGGGDNNNGCQETIVLNMT-KLAWSILTSVKGRNPLASEGLSVCSAI--IEGEHHLVAFGGYNGKYNNEVFVMRLKP 332 (507)
Q Consensus 256 l~v~GG~~~~~~~~d~~~~d~~-~~~W~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~l~v~GG~~~~~~~~v~~~~~~~ 332 (507)
|++.-= ......+.++++. +..-..++.+. .+. +.... ...+...|.+.++. ....+|.||+.+
T Consensus 339 Lvl~~~---~~~~~~l~v~~~~~~~~~~~~~~p~-------~g~-v~~~~~~~~~~~~~~~~ss~~--~P~~~y~~d~~t 405 (414)
T PF02897_consen 339 LVLSYR---ENGSSRLRVYDLDDGKESREIPLPE-------AGS-VSGVSGDFDSDELRFSYSSFT--TPPTVYRYDLAT 405 (414)
T ss_dssp EEEEEE---ETTEEEEEEEETT-TEEEEEEESSS-------SSE-EEEEES-TT-SEEEEEEEETT--EEEEEEEEETTT
T ss_pred EEEEEE---ECCccEEEEEECCCCcEEeeecCCc-------ceE-EeccCCCCCCCEEEEEEeCCC--CCCEEEEEECCC
Confidence 776632 2345678899998 44444443321 121 11111 11234555566654 357899999987
Q ss_pred CCC
Q 010571 333 RDI 335 (507)
Q Consensus 333 ~~w 335 (507)
.+.
T Consensus 406 ~~~ 408 (414)
T PF02897_consen 406 GEL 408 (414)
T ss_dssp TCE
T ss_pred CCE
Confidence 654
No 102
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.75 E-value=2.6 Score=39.07 Aligned_cols=154 Identities=21% Similarity=0.162 Sum_probs=88.0
Q ss_pred ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCC
Q 010571 36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD 115 (507)
Q Consensus 36 ~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 115 (507)
.++.||.--|..+ .+.+..||+.|++-.....++ ..-++=.++.++++||.+== .
T Consensus 54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l~----------------~~~FgEGit~~~d~l~qLTW------k 108 (264)
T PF05096_consen 54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSVPLP----------------PRYFGEGITILGDKLYQLTW------K 108 (264)
T ss_dssp ETTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-T----------------TT--EEEEEEETTEEEEEES------S
T ss_pred CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEEECC----------------ccccceeEEEECCEEEEEEe------c
Confidence 4677777777554 367889999999865544443 35677789999999999831 2
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEE-eecCCC-CCCCC
Q 010571 116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA-VEVTQT-PPAPR 193 (507)
Q Consensus 116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~g~-~p~~r 193 (507)
....++||+.+. +.+. ..+.+..+-.++..+..+++--| ++.++.+||.+.+=.. +.++.. .|..+
T Consensus 109 ~~~~f~yd~~tl--~~~~---~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 109 EGTGFVYDPNTL--KKIG---TFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp SSEEEEEETTTT--EEEE---EEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred CCeEEEEccccc--eEEE---EEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEECCEECCC
Confidence 345899999875 3443 33334567777877788888776 4579999998754322 222111 11111
Q ss_pred CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571 194 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 233 (507)
Q Consensus 194 ~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~ 233 (507)
---+..+ ++.||. +--..+.|.+.||.++.-..
T Consensus 177 -LNELE~i-~G~IyA-----NVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 177 -LNELEYI-NGKIYA-----NVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp -EEEEEEE-TTEEEE-----EETTSSEEEEEETTT-BEEE
T ss_pred -cEeEEEE-cCEEEE-----EeCCCCeEEEEeCCCCeEEE
Confidence 0111222 333332 11345789999999987544
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.75 E-value=0.69 Score=38.32 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=27.1
Q ss_pred HHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571 407 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 407 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
....+...|+..+..++++++..+..++.+..+.+..++.+..++.++..+...++..
T Consensus 14 ~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L 71 (140)
T PF10473_consen 14 ESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQL 71 (140)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555544444444444444444444444444444443333
No 104
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.68 E-value=5.7 Score=40.36 Aligned_cols=148 Identities=13% Similarity=0.111 Sum_probs=77.5
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC-CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~ 195 (507)
..++++|+.++.-+.+.. .+.. .......-+ ++|++....++ ..+++.+|+.++....+... + .. .
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g~-~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~-~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEGL-NGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P-AI-D 289 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCCC-cCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C-CC-c
Confidence 469999999988776642 2211 111111123 35554332221 24799999999988776421 1 11 1
Q ss_pred ceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEE
Q 010571 196 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 274 (507)
Q Consensus 196 ~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 274 (507)
.......+ +.|++.....+ ...++.+|+.++.+..+...+ .........-+++.+++..... ...+++++
T Consensus 290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~--~~~~l~~~ 360 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQD--GNFHVAAQ 360 (430)
T ss_pred CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccC--CceEEEEE
Confidence 12223334 34444332221 257999999988887764211 1111122223444443333221 13368999
Q ss_pred EcCcCeeEEecc
Q 010571 275 NMTKLAWSILTS 286 (507)
Q Consensus 275 d~~~~~W~~~~~ 286 (507)
|+.+...+.+..
T Consensus 361 dl~tg~~~~lt~ 372 (430)
T PRK00178 361 DLQRGSVRILTD 372 (430)
T ss_pred ECCCCCEEEccC
Confidence 999988877654
No 105
>PRK09039 hypothetical protein; Validated
Probab=94.65 E-value=0.44 Score=46.57 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=10.4
Q ss_pred hhhhhhHHHHHHHHHHHHHhHH
Q 010571 444 RSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 444 ~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+.++..++++++.+++++..++
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544444
No 106
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.63 E-value=0.36 Score=43.01 Aligned_cols=55 Identities=27% Similarity=0.392 Sum_probs=25.3
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+..++++.+.+...++...+......++.++..++++..++....++.++.+..+
T Consensus 96 el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 96 ELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444555555555555555544444
No 107
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.63 E-value=0.76 Score=41.09 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=24.9
Q ss_pred hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHH
Q 010571 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV 436 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~ 436 (507)
.++..++......+..+.....+..+|.+-++..+.+.+++++++...
T Consensus 34 eei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 34 EEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333344444555566666666666666666665555443
No 108
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.44 E-value=0.29 Score=49.41 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=16.7
Q ss_pred hhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhh
Q 010571 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC 447 (507)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 447 (507)
...+...+..+..++++.+.|++.++.++..++.++
T Consensus 289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 109
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.5 Score=48.13 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=39.5
Q ss_pred HHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhh---hhhhhHHHHHHHHHHHHHhHH----HHHHHH
Q 010571 399 RVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER---SRCFKLEAQIAELQKMLESSQ----TIENEV 471 (507)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~~~~~e~~~~e~~~~~~~~~----~~e~e~ 471 (507)
..++........+.+.|+..+.++++++++++.++.+.+.+..... .+++.++..+..++++|++.. +|++++
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444556666666666666666666666666555544332 222334444444444444433 444444
Q ss_pred HHHH
Q 010571 472 QILR 475 (507)
Q Consensus 472 ~~~~ 475 (507)
.+++
T Consensus 505 ~~l~ 508 (652)
T COG2433 505 AELR 508 (652)
T ss_pred HHHH
Confidence 4444
No 110
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.41 E-value=3.9 Score=37.83 Aligned_cols=178 Identities=13% Similarity=0.027 Sum_probs=96.0
Q ss_pred eeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCcc
Q 010571 8 LELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85 (507)
Q Consensus 8 ~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~ 85 (507)
+|+++..-++.+..... +-.+.-.+++ .+.|.+.|-.. . -=.+||.++.-+..+..
T Consensus 129 ~dpkt~evt~f~lp~~~--a~~nlet~vfD~~G~lWFt~q~G--~----yGrLdPa~~~i~vfpaP-------------- 186 (353)
T COG4257 129 LDPKTLEVTRFPLPLEH--ADANLETAVFDPWGNLWFTGQIG--A----YGRLDPARNVISVFPAP-------------- 186 (353)
T ss_pred ecCcccceEEeeccccc--CCCcccceeeCCCccEEEeeccc--c----ceecCcccCceeeeccC--------------
Confidence 45556666665532222 2233333444 34566655311 0 01567776665554432
Q ss_pred CCCCCccceeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCc-ccceEEEE--CCEEEEEcCcC
Q 010571 86 EVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR-GGHSVTLV--GSRLIIFGGED 161 (507)
Q Consensus 86 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r-~~~~~~~~--~~~l~~~GG~~ 161 (507)
.+-.-+.+|+ -++.+|+..= .-+-+-..|+.+..=+.++ .|.+. .+..-+.. -+.+++--
T Consensus 187 ---qG~gpyGi~atpdGsvwyasl------agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~witt--- 250 (353)
T COG4257 187 ---QGGGPYGICATPDGSVWYASL------AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWITT--- 250 (353)
T ss_pred ---CCCCCcceEECCCCcEEEEec------cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEec---
Confidence 2333334444 4888888621 1223777888888555553 33331 11111222 24566541
Q ss_pred CCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571 162 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 234 (507)
Q Consensus 162 ~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~ 234 (507)
.-...+++||+.+..|.+.+..+.- +|- .++-+-..+++++. ....+.|.+||+.+.+++.+
T Consensus 251 ---wg~g~l~rfdPs~~sW~eypLPgs~--arp-ys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~ 312 (353)
T COG4257 251 ---WGTGSLHRFDPSVTSWIEYPLPGSK--ARP-YSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVL 312 (353)
T ss_pred ---cCCceeeEeCcccccceeeeCCCCC--CCc-ceeeeccCCcEEee-----ccccCceeecCcccceEEEe
Confidence 1245799999999999998754332 332 34545445556652 22347899999999999885
No 111
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.29 E-value=0.44 Score=45.89 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010571 466 TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~~ 486 (507)
+++++.+.+..+.+...++++
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 112
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.27 E-value=0.64 Score=44.40 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=22.0
Q ss_pred hhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhh
Q 010571 404 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF 448 (507)
Q Consensus 404 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 448 (507)
.+...+++.+..++++.+.++.+.+..+++..+..+.+.++.++.
T Consensus 110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~ 154 (499)
T COG4372 110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLK 154 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555544555555544444444443
No 113
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.25 E-value=7 Score=39.57 Aligned_cols=193 Identities=8% Similarity=0.009 Sum_probs=103.6
Q ss_pred CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~ 131 (507)
.++|++|+.++.=+.+.... .........-+ .+|++.-.... ..++|.+|..++.++.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~ 271 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQ 271 (419)
T ss_pred CEEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEE
Confidence 37999999988766654322 11111222223 45655433221 3579999999999988
Q ss_pred eecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeC
Q 010571 132 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 211 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG 211 (507)
+.. .+..-.......-+.+|++.....+ ...++.+|+.++....+...|. ... ...-.++.|++...
T Consensus 272 LT~---~~~~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 272 ITN---YPGIDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSR 338 (419)
T ss_pred ccc---CCCccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEc
Confidence 752 2221111111112346666654321 3579999999998877754322 122 22223343443333
Q ss_pred CCCCc---CCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571 212 CSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 212 ~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 286 (507)
..... ...+++++|+.++.++.+...+ ...+-...-+++.+++-... .....++.++.+.+.=..++.
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeEEeec
Confidence 22211 2358999999999998875321 22223334456655554322 233467888876654444544
No 114
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.21 E-value=5.9 Score=38.55 Aligned_cols=238 Identities=14% Similarity=0.058 Sum_probs=103.7
Q ss_pred EEEEEcCCCCCccCCceEEEECCC-CceeEeeeccccccCccccCCccCCCCCccceeeEE-E-CCEEEEEcccCCCCCC
Q 010571 39 KLYIVGGSRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-W-GTKLLILGGHYKKSSD 115 (507)
Q Consensus 39 ~lyv~GG~~~~~~~~~~~~~d~~t-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~ 115 (507)
.+|+..+. ...+.+||..+ +++..+..... ....+.++. - ++.||+.+. .
T Consensus 3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~~----------------~~~~~~l~~spd~~~lyv~~~-~----- 55 (330)
T PRK11028 3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVDV----------------PGQVQPMVISPDKRHLYVGVR-P----- 55 (330)
T ss_pred EEEEEcCC-----CCCEEEEEECCCCceeeeeEEec----------------CCCCccEEECCCCCEEEEEEC-C-----
Confidence 45666442 35678888864 56766654421 111112222 2 345666433 2
Q ss_pred cceEEEEECC-CCcEEEeecCCCCCCCcccceEEE-ECC-EEEEEcCcCCCCCccCcEEEEEcCCCc-E-EEeecCCCCC
Q 010571 116 SMIVRFIDLE-TNLCGVMETSGKVPVARGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETMT-W-DAVEVTQTPP 190 (507)
Q Consensus 116 ~~~~~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~-~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~-W-~~~~~~g~~p 190 (507)
...+..|++. ++.+..... .+.+..-..++. -++ .+|+.. .. .+.+.+|++.++. . ..+. ..+
T Consensus 56 ~~~i~~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~ 123 (330)
T PRK11028 56 EFRVLSYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIE 123 (330)
T ss_pred CCcEEEEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---ecc
Confidence 1346667665 566665542 222111112222 234 455543 22 3468888876421 1 1121 111
Q ss_pred CCCCCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCc-EEeee-ecCCCCCCCcceEEEEE-C-CEEEEEeccCCC
Q 010571 191 APRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPE-IKGDLVTGRAGHAGITI-D-ENWYIVGGGDNN 265 (507)
Q Consensus 191 ~~r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~-W~~~~-~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~ 265 (507)
.....|.++...+ +.+|+..- . .+.+.+||+.+.. ..... .....+....-+.++.. + ..+|+....
T Consensus 124 ~~~~~~~~~~~p~g~~l~v~~~-~----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~--- 195 (330)
T PRK11028 124 GLEGCHSANIDPDNRTLWVPCL-K----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL--- 195 (330)
T ss_pred CCCcccEeEeCCCCCEEEEeeC-C----CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC---
Confidence 1122355545444 44555432 2 2578999987632 22100 00011111111122322 3 356666331
Q ss_pred CCcceEEEEEcC--cCeeEEe---ccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECC
Q 010571 266 NGCQETIVLNMT--KLAWSIL---TSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 331 (507)
Q Consensus 266 ~~~~d~~~~d~~--~~~W~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~ 331 (507)
.+.+.+|+++ +...+.+ ..+|...+.+ ++.......+++.++|+... ..+.+.+|++.
T Consensus 196 --~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~ 258 (330)
T PRK11028 196 --NSSVDVWQLKDPHGEIECVQTLDMMPADFSDT--RWAADIHITPDGRHLYACDR----TASLISVFSVS 258 (330)
T ss_pred --CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC--ccceeEEECCCCCEEEEecC----CCCeEEEEEEe
Confidence 2356677765 3444433 3332221112 22223334455667888532 13456666653
No 115
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.08 E-value=7.8 Score=39.47 Aligned_cols=148 Identities=15% Similarity=0.137 Sum_probs=77.0
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010571 116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 194 (507)
Q Consensus 116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~ 194 (507)
...++++|+.+++-..+. ..+.... .....- +.+|++....++ ..+++.+|+.++....+... + . .
T Consensus 227 ~~~l~~~dl~~g~~~~l~---~~~g~~~-~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~-~-~ 293 (433)
T PRK04922 227 RSAIYVQDLATGQRELVA---SFRGING-APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---F-G-I 293 (433)
T ss_pred CcEEEEEECCCCCEEEec---cCCCCcc-CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---C-C-C
Confidence 346999999998877664 2222111 111122 335554432222 24799999998887665421 1 1 1
Q ss_pred CceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCE-EEEEeccCCCCCcceEEE
Q 010571 195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN-WYIVGGGDNNNGCQETIV 273 (507)
Q Consensus 195 ~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~-l~v~GG~~~~~~~~d~~~ 273 (507)
........++..++|.....+ ...+|.+|+.++..+.+...+.. .......-+++ |++..+ .+ ....+++
T Consensus 294 ~~~~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g~~~~lt~~g~~----~~~~~~SpDG~~Ia~~~~-~~--~~~~I~v 364 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRGG--RPQIYRVAASGGSAERLTFQGNY----NARASVSPDGKKIAMVHG-SG--GQYRIAV 364 (433)
T ss_pred ccceEECCCCCEEEEEECCCC--CceEEEEECCCCCeEEeecCCCC----ccCEEECCCCCEEEEEEC-CC--CceeEEE
Confidence 122333344444444322111 25799999988888776432211 11112222444 444433 21 2237899
Q ss_pred EEcCcCeeEEec
Q 010571 274 LNMTKLAWSILT 285 (507)
Q Consensus 274 ~d~~~~~W~~~~ 285 (507)
+|+.+.....+.
T Consensus 365 ~d~~~g~~~~Lt 376 (433)
T PRK04922 365 MDLSTGSVRTLT 376 (433)
T ss_pred EECCCCCeEECC
Confidence 999888877654
No 116
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.07 E-value=0.35 Score=43.24 Aligned_cols=9 Identities=11% Similarity=0.501 Sum_probs=3.3
Q ss_pred hhhHHHHHH
Q 010571 413 SRFREKIDE 421 (507)
Q Consensus 413 ~~l~~~~~~ 421 (507)
++++.++..
T Consensus 103 ~~l~~~l~~ 111 (206)
T PRK10884 103 KTLTDKLNN 111 (206)
T ss_pred HHHHHHHHH
Confidence 333333333
No 117
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.05 E-value=4.2 Score=37.77 Aligned_cols=162 Identities=15% Similarity=0.043 Sum_probs=90.0
Q ss_pred CCEEEEEcccCCCCCCcceEEEEECC-----CCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEE
Q 010571 100 GTKLLILGGHYKKSSDSMIVRFIDLE-----TNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD 174 (507)
Q Consensus 100 ~~~iyv~GG~~~~~~~~~~~~~~d~~-----t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d 174 (507)
.+++|++.|.... .+..|... .+.....- .+|.+-.|...+++++.+|+.-. .++.|.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 5788888886544 35555322 22233332 56777778888889999998644 267899999
Q ss_pred cCCCcEE-EeecCCCC-----CCCCCC---ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC----cEEeeeecCCCC
Q 010571 175 LETMTWD-AVEVTQTP-----PAPRYD---HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN----EWSQPEIKGDLV 241 (507)
Q Consensus 175 ~~t~~W~-~~~~~g~~-----p~~r~~---~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~----~W~~~~~~~~~p 241 (507)
+.+..-. .....+.. |-...+ .-+++-.++ |+++=....+.-.--+-.+|+.+. +|.. .++
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T-----~~~ 169 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-----SYP 169 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEe-----ccC
Confidence 9988765 33221111 111111 123333445 666654433321123455666554 3543 233
Q ss_pred CCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEE
Q 010571 242 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI 283 (507)
Q Consensus 242 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~ 283 (507)
.+..+ .++++-+.||++-..+... ..-.+.||+.+++=..
T Consensus 170 k~~~~-naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~ 209 (250)
T PF02191_consen 170 KRSAG-NAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEED 209 (250)
T ss_pred chhhc-ceeeEeeEEEEEEECCCCC-cEEEEEEECCCCceec
Confidence 33333 4566667788886544332 3335789998876543
No 118
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=93.88 E-value=0.3 Score=47.22 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=11.3
Q ss_pred HHHHHHHhHHHHHHHHHHhh
Q 010571 470 EVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~~~~ 489 (507)
|.+-++++.+.-|+|+..++
T Consensus 348 E~q~~~kkrqnaekql~~Ak 367 (575)
T KOG4403|consen 348 EVQYYNKKRQNAEKQLKEAK 367 (575)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 44455555566666666544
No 119
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.85 E-value=9.3 Score=39.59 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=54.4
Q ss_pred CCeEeeCCC--CCeEEeccCC-CCCCc-cccceEEEEC-CEEEEEcCCCCCccCCceEEEECCCCc--eeEeeecccccc
Q 010571 4 GSWHLELPY--DLWVTLPVSG-ARPSP-RYKHAAAVFD-QKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDA 76 (507)
Q Consensus 4 ~~~~~d~~~--~~W~~~~~~~-~~p~~-r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~ 76 (507)
-++++|+.+ -.|..-.... ..+.+ -....+++.+ +.||+-.. ...++.+|..|++ |+.-.....
T Consensus 72 ~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~AlD~~TG~~~W~~~~~~~~--- 142 (488)
T cd00216 72 ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLVALDAETGKQVWKFGNNDQV--- 142 (488)
T ss_pred cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEEEEECCCCCEeeeecCCCCc---
Confidence 457888774 4587543211 00111 1122234445 77776432 3568999999874 765332110
Q ss_pred CccccCCccCCCCCccceeeEEECCEEEEEcccCCCC---CCcceEEEEECCCC--cEEEee
Q 010571 77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS---SDSMIVRFIDLETN--LCGVME 133 (507)
Q Consensus 77 ~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~d~~t~--~W~~~~ 133 (507)
.+......+.+..++.+|+ |...... .....++.||..|+ .|+.-.
T Consensus 143 ----------~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 143 ----------PPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred ----------CcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 0000112333445666554 4322111 12346899999887 487543
No 120
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.83 E-value=0.54 Score=51.24 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=27.0
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
+..++..++.++..+........+++..+...++.+..++.++.+.+.
T Consensus 677 ~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 677 ILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555555666666666665555555555444
No 121
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.81 E-value=0.37 Score=42.95 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
....+...++.++.++.+....+...+.++..++.++..++..+.++.+-.+.++
T Consensus 96 ~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 96 QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555555555555555555555555555444443
No 122
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.79 E-value=4.6 Score=35.92 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=76.7
Q ss_pred EEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCC
Q 010571 33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYK 111 (507)
Q Consensus 33 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~ 111 (507)
++...+.+|+|-| +.+++++.........+... .....| .....+..... +++|+|-|.
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~----------~w~~~p-~~IDAa~~~~~~~~~yfFkg~-- 71 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISS----------FWPSLP-SPVDAAFERPDTGKIYFFKGD-- 71 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhh----------hCCCCC-CCccEEEEECCCCEEEEECCC--
Confidence 3345689999988 45777776521111111000 011112 22222322223 889999763
Q ss_pred CCCCcceEEEEECCCCcEE---EeecCCCCCC-CcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEe---
Q 010571 112 KSSDSMIVRFIDLETNLCG---VMETSGKVPV-ARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAV--- 183 (507)
Q Consensus 112 ~~~~~~~~~~~d~~t~~W~---~~~~~g~~p~-~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~--- 183 (507)
.+|+|+..+.... .+...+-.+. .....+...- ++++|+|-|. ..+.||..+.+...-
T Consensus 72 ------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~ 137 (194)
T cd00094 72 ------KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPK 137 (194)
T ss_pred ------EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCc
Confidence 3788876642221 1111011111 1222222222 5799999873 477777654433210
Q ss_pred --ecC-CCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571 184 --EVT-QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 230 (507)
Q Consensus 184 --~~~-g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~ 230 (507)
... ..+|.. -.++....++.+|+|-| +..|+||..+.+
T Consensus 138 ~i~~~w~g~p~~--idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 138 LIETDFPGVPDK--VDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred chhhcCCCcCCC--cceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 000 022322 23344455577999988 679999988765
No 123
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.77 E-value=0.99 Score=43.38 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=27.2
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
...+++.++...+..+..++.+++..+.+++..++++.++++.++..+..+.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555555555554444443
No 124
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.76 E-value=0.55 Score=51.20 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=29.4
Q ss_pred HHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHH-HhHH----HHHHHHHHHHHhHHHHHH
Q 010571 420 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML-ESSQ----TIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 420 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~-~~~~----~~e~e~~~~~~~~~~~~~ 483 (507)
+.+.++..+.+.++...+...++.++....++.++..+++++ +..+ +.+.++++|.++.+.++.
T Consensus 347 ~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 347 DDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444555555556666666666555 2222 334444444444443333
No 125
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.70 E-value=5.8 Score=36.73 Aligned_cols=220 Identities=14% Similarity=0.078 Sum_probs=115.8
Q ss_pred EeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCcc
Q 010571 7 HLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85 (507)
Q Consensus 7 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~ 85 (507)
++||.+.+=.+.+ ++..-.-|.+++- ++...+.-+ ...+-++|+.+..-+..+.....
T Consensus 87 hLdP~tGev~~yp----Lg~Ga~Phgiv~gpdg~~Witd~------~~aI~R~dpkt~evt~f~lp~~~----------- 145 (353)
T COG4257 87 HLDPATGEVETYP----LGSGASPHGIVVGPDGSAWITDT------GLAIGRLDPKTLEVTRFPLPLEH----------- 145 (353)
T ss_pred ecCCCCCceEEEe----cCCCCCCceEEECCCCCeeEecC------cceeEEecCcccceEEeeccccc-----------
Confidence 4666666666665 3444444554433 233333322 12688999998887776654321
Q ss_pred CCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceE-EEECCEEEEEcCcCC
Q 010571 86 EVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSV-TLVGSRLIIFGGEDR 162 (507)
Q Consensus 86 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~-~~~~~~l~~~GG~~~ 162 (507)
+-.+.-.+++ .+.|++.|-.... -.+||.++.-+..+ .|.+..-+.+ +.-++.+|+.-=
T Consensus 146 ----a~~nlet~vfD~~G~lWFt~q~G~y-------GrLdPa~~~i~vfp----aPqG~gpyGi~atpdGsvwyasl--- 207 (353)
T COG4257 146 ----ADANLETAVFDPWGNLWFTGQIGAY-------GRLDPARNVISVFP----APQGGGPYGICATPDGSVWYASL--- 207 (353)
T ss_pred ----CCCcccceeeCCCccEEEeeccccc-------eecCcccCceeeec----cCCCCCCcceEECCCCcEEEEec---
Confidence 2223333444 3667777642211 15666666555443 3333333333 334677777521
Q ss_pred CCCccCcEEEEEcCCCcEEEeecCCCCCCCC--CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCC
Q 010571 163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPR--YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240 (507)
Q Consensus 163 ~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r--~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~ 240 (507)
.-|-+-..|+.+..=..+. .|.+. ..-.+-+..-+++++.- .-...+++||++...|.+-. +
T Consensus 208 ---agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~sW~eyp----L 271 (353)
T COG4257 208 ---AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTSWIEYP----L 271 (353)
T ss_pred ---cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEec-----cCCceeeEeCcccccceeee----C
Confidence 2345777888777555553 22221 11112222334566641 12256999999999999842 3
Q ss_pred CCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571 241 VTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 241 p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 286 (507)
|......-+..+ .+++++- .-..+-+..||+.+.+++.++.
T Consensus 272 Pgs~arpys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 272 PGSKARPYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred CCCCCCcceeeeccCCcEEee-----ccccCceeecCcccceEEEecC
Confidence 322111122333 3456643 1123468899999999998754
No 126
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.70 E-value=6.8 Score=37.50 Aligned_cols=218 Identities=13% Similarity=0.165 Sum_probs=92.6
Q ss_pred CCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEC-CCCceeEeeeccccccCccccCCccCCCCC
Q 010571 12 YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL-RSLAWSNLRLETELDADKTEDSGLLEVLPP 90 (507)
Q Consensus 12 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~-~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (507)
-..|+.+......+....-+++...++..|+.|.. .+..... .-.+|+.++... +.+
T Consensus 46 G~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~---------------~lp 103 (302)
T PF14870_consen 46 GKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLSS---------------KLP 103 (302)
T ss_dssp TSS-EE-----S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS-EE----T---------------T-S
T ss_pred CccccccccCCCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCCcEEeecCC---------------CCC
Confidence 46788876422222112233444568889988741 2322223 345899987532 113
Q ss_pred ccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccC
Q 010571 91 MSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLN 168 (507)
Q Consensus 91 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~ 168 (507)
-..+.+..+ ++.++++|.. ..++.=.-.-.+|+.+.. ...+ .-..+... ++.+++++...
T Consensus 104 gs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~---~~~g-s~~~~~r~~dG~~vavs~~G------- 165 (302)
T PF14870_consen 104 GSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVS---ETSG-SINDITRSSDGRYVAVSSRG------- 165 (302)
T ss_dssp S-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE----S-----EEEEEE-TTS-EEEEETTS-------
T ss_pred CCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEccc---CCcc-eeEeEEECCCCcEEEEECcc-------
Confidence 333444444 5677777642 125554445569998863 1111 11122223 44656565432
Q ss_pred cEE-EEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEE--CCCCcEEeeeecCCCCCCCc
Q 010571 169 DVH-FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLD--LQTNEWSQPEIKGDLVTGRA 245 (507)
Q Consensus 169 ~~~-~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d--~~~~~W~~~~~~~~~p~~r~ 245 (507)
.++ ..|+....|.... .+..|.-.+|....++.|++.. .++ .+..=+ -...+|.+.. .+......
T Consensus 166 ~~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~--~~~~~~~~ 233 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPI--IPIKTNGY 233 (302)
T ss_dssp SEEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B---TTSS--S
T ss_pred cEEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCcccccccc--CCcccCce
Confidence 343 4677777899886 3455666777777788787765 322 233333 2345687732 12222233
Q ss_pred ceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccC
Q 010571 246 GHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV 287 (507)
Q Consensus 246 ~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~ 287 (507)
++-.+.+ ++.+++.||.. .+++=.-.-.+|++.+..
T Consensus 234 ~~ld~a~~~~~~~wa~gg~G------~l~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 234 GILDLAYRPPNEIWAVGGSG------TLLVSTDGGKTWQKDRVG 271 (302)
T ss_dssp -EEEEEESSSS-EEEEESTT-------EEEESSTTSS-EE-GGG
T ss_pred eeEEEEecCCCCEEEEeCCc------cEEEeCCCCccceECccc
Confidence 3333333 46788888732 233333456789986543
No 127
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=93.59 E-value=1 Score=33.21 Aligned_cols=69 Identities=17% Similarity=0.335 Sum_probs=39.9
Q ss_pred hHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010571 405 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~ 479 (507)
+...+.+...+-.++...+....+.+..+...-.+++..+.++.++|..+..++++ -|+|+.+|+.+++
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~------YEeEI~rLr~eLe 74 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ------YEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 33444455555555555555555666666666666667777777777666544443 3556666665554
No 128
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.54 E-value=1.3 Score=43.69 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh
Q 010571 394 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE 443 (507)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 443 (507)
++.+....+..+.....+..+|+.+|..+++++..++.++.+....+.+.
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~ 92 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKL 92 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333333333333444444555555555555544444444444333333
No 129
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=93.52 E-value=0.87 Score=42.17 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=27.6
Q ss_pred HHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 416 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 416 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+..++....+++..++.+..+..+...+..++++...++...+++|+.+|
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555566666666666666666666
No 130
>PRK13684 Ycf48-like protein; Provisional
Probab=93.39 E-value=8.4 Score=37.65 Aligned_cols=217 Identities=11% Similarity=0.066 Sum_probs=100.6
Q ss_pred CCCeEEeccCCCCCCc-cccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCC
Q 010571 12 YDLWVTLPVSGARPSP-RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPP 90 (507)
Q Consensus 12 ~~~W~~~~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (507)
-..|+.+... .|.. ..-.++...++..|+.|. ...+++=+-.-.+|+.+..... .+
T Consensus 75 G~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~------~g~i~~S~DgG~tW~~~~~~~~---------------~~ 131 (334)
T PRK13684 75 GETWEERSLD--LPEENFRLISISFKGDEGWIVGQ------PSLLLHTTDGGKNWTRIPLSEK---------------LP 131 (334)
T ss_pred CCCceECccC--CcccccceeeeEEcCCcEEEeCC------CceEEEECCCCCCCeEccCCcC---------------CC
Confidence 3579887642 2222 122333334555666553 1223222112248988764211 01
Q ss_pred ccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCc
Q 010571 91 MSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLND 169 (507)
Q Consensus 91 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~ 169 (507)
...+.+..+ ++.+|+.|.. ..++.-+-.-.+|..+.. +..-..+.+....+..++..|..+ .
T Consensus 132 ~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~ 194 (334)
T PRK13684 132 GSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------N 194 (334)
T ss_pred CCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------e
Confidence 112233334 3456666532 124444445579998752 222233334444443344333211 2
Q ss_pred EEEE-EcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEE-C-CCCcEEeeeecCCCCCCCcc
Q 010571 170 VHFL-DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLD-L-QTNEWSQPEIKGDLVTGRAG 246 (507)
Q Consensus 170 ~~~~-d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d-~-~~~~W~~~~~~~~~p~~r~~ 246 (507)
++.- |....+|+.+.. +..+..++++...++.++++|..+ ..++. . ...+|+.+.. +........
T Consensus 195 i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~~~~~~~l 262 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PEITNGYGY 262 (334)
T ss_pred EEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-Cccccccce
Confidence 3332 334457998853 334555566666677788887642 22332 2 2347997531 111111122
Q ss_pred eEEEEE-CCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571 247 HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 247 ~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 286 (507)
++++.. ++.++++|.. + -++.-...-.+|..+..
T Consensus 263 ~~v~~~~~~~~~~~G~~-G-----~v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 263 LDLAYRTPGEIWAGGGN-G-----TLLVSKDGGKTWEKDPV 297 (334)
T ss_pred eeEEEcCCCCEEEEcCC-C-----eEEEeCCCCCCCeECCc
Confidence 333333 4578777652 1 23333334568998653
No 131
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.37 E-value=0.34 Score=48.20 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 010571 466 TIENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~ 485 (507)
+|++++++++.++++|.+++
T Consensus 120 ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555544
No 132
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.35 E-value=0.46 Score=41.69 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571 395 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
++...+++.+++....++..|...+++++.+.++.+.++++++.++..+.+...++.-++..++.+..
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 34444444455555555555555555555555555555555555555554444444444444444433
No 133
>PRK09039 hypothetical protein; Validated
Probab=93.29 E-value=0.99 Score=44.13 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=21.8
Q ss_pred HHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHH
Q 010571 416 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 461 (507)
Q Consensus 416 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~ 461 (507)
...+...+....+...+++.++.|++.+++++..++..+...+++.
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455555555555555555554444444
No 134
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.29 E-value=9 Score=37.64 Aligned_cols=278 Identities=17% Similarity=0.165 Sum_probs=131.1
Q ss_pred CeEeeCCCCCeEEeccCCCCCCccccceEEE--ECCEEEEEcCCCCCccCCce--EEEECCCCceeEeeeccccccCccc
Q 010571 5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAV--FDQKLYIVGGSRNGRFLSDV--QVFDLRSLAWSNLRLETELDADKTE 80 (507)
Q Consensus 5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~--~~~d~~t~~W~~~~~~~~~~~~~~~ 80 (507)
+|.||..+..++.+......+.|. -++. -++.||+..... .....+ +.++..+++.+.+......
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~Ps---~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~------ 85 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGENPS---WLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPSG------ 85 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSEC---CEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEES------
T ss_pred EEEEcCCCCCceEeeeecCCCCCc---eEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeeccC------
Confidence 356777899998776421122222 1222 367888886543 112334 4455555777777654311
Q ss_pred cCCccCCCCCccceeeEEE---CCEEEEEcccCCCCCCcceEEEEECCCC-cEEEee----c--CCCCC---CCcccceE
Q 010571 81 DSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETN-LCGVME----T--SGKVP---VARGGHSV 147 (507)
Q Consensus 81 ~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~t~-~W~~~~----~--~g~~p---~~r~~~~~ 147 (507)
+. ..+.+.+ +..||+.-- . ...+.+|++... .-.... . .|+-| ..-.-|.+
T Consensus 86 ---------g~-~p~~i~~~~~g~~l~vany-~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 86 ---------GS-SPCHIAVDPDGRFLYVANY-G-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp ---------SS-CEEEEEECTTSSEEEEEET-T-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred ---------CC-CcEEEEEecCCCEEEEEEc-c-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 22 2222233 455666421 1 224777777653 332221 0 11211 11223444
Q ss_pred EEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCCCCCceEEEE-cCcEEEEEeCCCCCcCCCcEE
Q 010571 148 TLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLH 222 (507)
Q Consensus 148 ~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~-~~~~l~i~GG~~~~~~~~~i~ 222 (507)
..- ++.+|+..= -.+.|+.|++.... ....... ..|..-.-.-++.. .+.++|+..-.+ +.+.
T Consensus 150 ~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~ 217 (345)
T PF10282_consen 150 VFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVS 217 (345)
T ss_dssp EE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEE
T ss_pred EECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----CcEE
Confidence 444 346776521 14578898887655 5443221 12222211223443 346788887653 5666
Q ss_pred EEECC--CCcEEeeeecCCCCCC---CcceEEEEE---CCEEEEEeccCCCCCcceEEEEEc--CcCeeEEeccCCCCCC
Q 010571 223 VLDLQ--TNEWSQPEIKGDLVTG---RAGHAGITI---DENWYIVGGGDNNNGCQETIVLNM--TKLAWSILTSVKGRNP 292 (507)
Q Consensus 223 ~~d~~--~~~W~~~~~~~~~p~~---r~~~~~~~~---~~~l~v~GG~~~~~~~~d~~~~d~--~~~~W~~~~~~~~~~p 292 (507)
.|+.. .+.++.+......|.. ....+.+.+ +..||+.... .+.+.+|++ .+...+.+...+.
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~--- 289 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPT--- 289 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEE---
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeC---
Confidence 66665 6677765543333322 212333334 3357776432 345667776 4455555544321
Q ss_pred CCCCCCceEEE-EEcCceEEEEEcccCCCcCCeEEEE--ECCCCCCC
Q 010571 293 LASEGLSVCSA-IIEGEHHLVAFGGYNGKYNNEVFVM--RLKPRDIP 336 (507)
Q Consensus 293 ~~~~~~~~~~~-~~~~~~~l~v~GG~~~~~~~~v~~~--~~~~~~w~ 336 (507)
.+.....+ +.+++.+|+|.+..+ +.|.+| |..+..+.
T Consensus 290 ---~G~~Pr~~~~s~~g~~l~Va~~~s----~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 290 ---GGKFPRHFAFSPDGRYLYVANQDS----NTVSVFDIDPDTGKLT 329 (345)
T ss_dssp ---SSSSEEEEEE-TTSSEEEEEETTT----TEEEEEEEETTTTEEE
T ss_pred ---CCCCccEEEEeCCCCEEEEEecCC----CeEEEEEEeCCCCcEE
Confidence 12222223 344556777755433 345555 44554443
No 135
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=93.23 E-value=3.9 Score=41.59 Aligned_cols=123 Identities=16% Similarity=0.242 Sum_probs=61.2
Q ss_pred CCCCCCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEEC--CEEEEEeccCCCC
Q 010571 190 PAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNN 266 (507)
Q Consensus 190 p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~ 266 (507)
-.|+.+.-++... +.-||+.|- + +++|+||+..+.|-.+-. ..-....++.++ +.|+.+||.++
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs-g-----~evYRlNLEqGrfL~P~~-----~~~~~lN~v~in~~hgLla~Gt~~g-- 197 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS-G-----SEVYRLNLEQGRFLNPFE-----TDSGELNVVSINEEHGLLACGTEDG-- 197 (703)
T ss_pred ecCcCCccccccCCCccEEEeec-C-----cceEEEEccccccccccc-----cccccceeeeecCccceEEecccCc--
Confidence 3455555555532 223665443 2 789999999999976421 111222334443 46888887544
Q ss_pred CcceEEEEEcCcCeeE-EeccCCC--CCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571 267 GCQETIVLNMTKLAWS-ILTSVKG--RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 332 (507)
Q Consensus 267 ~~~d~~~~d~~~~~W~-~~~~~~~--~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~ 332 (507)
.+..+|+.+..-- .|..... ..|......++.++.+.+++.=+-+|-. ...++.||+..
T Consensus 198 ---~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iyDLRa 259 (703)
T KOG2321|consen 198 ---VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIYDLRA 259 (703)
T ss_pred ---eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEEEccc
Confidence 3667777655321 1111100 1122222334555555554333344443 34567777643
No 136
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.95 E-value=12 Score=38.07 Aligned_cols=183 Identities=10% Similarity=0.053 Sum_probs=93.8
Q ss_pred CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~ 131 (507)
..++++|+.++.-+.+..... ........- +++|++...... ..+++++|+.++....
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g-----------------~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~ 281 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG-----------------LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSR 281 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC-----------------CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEE
Confidence 479999999887766543221 111111122 345554322111 2469999999998877
Q ss_pred eecCCCCCCCcccceEEEEC-CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcC-cEEEEE
Q 010571 132 METSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVF 209 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~i~ 209 (507)
+.. .+. ........-+ ..|++.....+ ...++.+|+.++++..+...+ ..........+ +.|++.
T Consensus 282 lt~---~~~-~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 282 VTN---HPA-IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMV 348 (430)
T ss_pred ccc---CCC-CcCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEE
Confidence 642 111 1111111223 35655432221 347999999999888775322 11122222233 444444
Q ss_pred eCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcC
Q 010571 210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL 279 (507)
Q Consensus 210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~ 279 (507)
.... + ...++.+|+.++..+.+...+ ........-+++.+++....+ ....+++++....
T Consensus 349 ~~~~-~--~~~l~~~dl~tg~~~~lt~~~-----~~~~p~~spdg~~i~~~~~~~--g~~~l~~~~~~g~ 408 (430)
T PRK00178 349 HRQD-G--NFHVAAQDLQRGSVRILTDTS-----LDESPSVAPNGTMLIYATRQQ--GRGVLMLVSINGR 408 (430)
T ss_pred EccC-C--ceEEEEEECCCCCEEEccCCC-----CCCCceECCCCCEEEEEEecC--CceEEEEEECCCC
Confidence 3322 2 246999999998887764211 111122333666666654322 2235777776543
No 137
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=92.88 E-value=1.8 Score=41.39 Aligned_cols=20 Identities=5% Similarity=0.300 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 010571 466 TIENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~ 485 (507)
.|.+|+++..++++++..++
T Consensus 360 ~L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 360 SLAKELEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444443
No 138
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.81 E-value=3.6 Score=33.82 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=57.3
Q ss_pred EECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEE-EcC
Q 010571 98 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL-DLE 176 (507)
Q Consensus 98 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~-d~~ 176 (507)
.++|-||...-. .....+.+..||..+.+|+.+..............++.++++|-++.-........-++|++ |..
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 467888887765 22235579999999999998864211234455667788899888875543322123467887 466
Q ss_pred CCcEEEeec
Q 010571 177 TMTWDAVEV 185 (507)
Q Consensus 177 t~~W~~~~~ 185 (507)
...|.+...
T Consensus 81 k~~Wsk~~~ 89 (129)
T PF08268_consen 81 KQEWSKKHI 89 (129)
T ss_pred cceEEEEEE
Confidence 788998764
No 139
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.72 E-value=4.7 Score=33.10 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=53.1
Q ss_pred CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC-CCcceEEEEE-cCcCe
Q 010571 203 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-NGCQETIVLN-MTKLA 280 (507)
Q Consensus 203 ~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~d~~~~d-~~~~~ 280 (507)
|+.+|-..-. .....+.|..||+.+.+|+.+...............+.++++|.++.-.... ...-++|+++ ..+..
T Consensus 5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~ 83 (129)
T PF08268_consen 5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQE 83 (129)
T ss_pred CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccce
Confidence 5545544333 3344577999999999999875421223345556778889998887554332 2346899885 66778
Q ss_pred eEEec
Q 010571 281 WSILT 285 (507)
Q Consensus 281 W~~~~ 285 (507)
|++..
T Consensus 84 Wsk~~ 88 (129)
T PF08268_consen 84 WSKKH 88 (129)
T ss_pred EEEEE
Confidence 99753
No 140
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=1.5 Score=45.89 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=13.2
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRF 415 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l 415 (507)
+..|..+++.+++..++.+++.++.
T Consensus 326 qaELerRRq~leeqqqreree~eqk 350 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQK 350 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665555544444443
No 141
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.70 E-value=2 Score=37.85 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571 393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
.|+...++....+.........++..+.....+++.-+.|++....+.+.+++++..++.++.+++..+...
T Consensus 35 ~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 35 SLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 333333333334444334444455445555555555555666666666666666667777777666665553
No 142
>PRK02889 tolB translocation protein TolB; Provisional
Probab=92.64 E-value=13 Score=37.77 Aligned_cols=182 Identities=9% Similarity=-0.008 Sum_probs=89.7
Q ss_pred CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~ 131 (507)
..++++|+.++.=..+.... .........-+ ++|++...... ..++|.+|..++....
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~ 278 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFK-----------------GSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRR 278 (427)
T ss_pred cEEEEEECCCCCEEEeecCC-----------------CCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEE
Confidence 46999999888654443221 11111222223 45554432221 3469999998877665
Q ss_pred eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcC-cEEEEE
Q 010571 132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVF 209 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~i~ 209 (507)
+.. .. .........-++ .|++.....+ ...++.++..+.....+...+ ..........+ +.|++.
T Consensus 279 lt~---~~-~~~~~~~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 279 LTQ---SS-GIDTEPFFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCC---CC-CCCcCeEEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEE
Confidence 531 11 111111222234 4554332211 346888898888777765322 11122223333 444443
Q ss_pred eCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCc
Q 010571 210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK 278 (507)
Q Consensus 210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~ 278 (507)
...++ ...++++|+.++..+.+.... ........-+++.+++....+. ...+++++...
T Consensus 346 s~~~g---~~~I~v~d~~~g~~~~lt~~~-----~~~~p~~spdg~~l~~~~~~~g--~~~l~~~~~~g 404 (427)
T PRK02889 346 SRVGG---AFKLYVQDLATGQVTALTDTT-----RDESPSFAPNGRYILYATQQGG--RSVLAAVSSDG 404 (427)
T ss_pred EccCC---cEEEEEEECCCCCeEEccCCC-----CccCceECCCCCEEEEEEecCC--CEEEEEEECCC
Confidence 33221 136999999888877653211 1111223335666666553322 23567777644
No 143
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.61 E-value=2.2 Score=39.79 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=15.1
Q ss_pred hHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 429 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 429 ~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+.+|++..+..++++++.+..+++++.++++++...+
T Consensus 61 l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 61 LEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444
No 144
>PTZ00420 coronin; Provisional
Probab=92.60 E-value=15 Score=38.55 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=51.9
Q ss_pred EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEE
Q 010571 153 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 232 (507)
Q Consensus 153 ~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~ 232 (507)
.+++.||.+ ..+.++|+.+.+=.. .. .. +..-.++....++.+++.++.+ ..+.+||+.++.-.
T Consensus 139 ~iLaSgS~D------gtIrIWDl~tg~~~~-~i--~~--~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 139 YIMCSSGFD------SFVNIWDIENEKRAF-QI--NM--PKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIA 202 (568)
T ss_pred eEEEEEeCC------CeEEEEECCCCcEEE-EE--ec--CCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEE
Confidence 455566653 358889988765211 11 11 1112334444566677766643 45899999876432
Q ss_pred eeeecCCCCCCCcceEEE--E--ECCEEEEEeccCCCCCcceEEEEEcCc
Q 010571 233 QPEIKGDLVTGRAGHAGI--T--IDENWYIVGGGDNNNGCQETIVLNMTK 278 (507)
Q Consensus 233 ~~~~~~~~p~~r~~~~~~--~--~~~~l~v~GG~~~~~~~~d~~~~d~~~ 278 (507)
.- ..+. ...+..-... . -++..++.+|.+.. ....+.++|+.+
T Consensus 203 ~t-l~gH-~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~ 249 (568)
T PTZ00420 203 SS-FHIH-DGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKN 249 (568)
T ss_pred EE-Eecc-cCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCC
Confidence 21 0010 0111110111 1 23456666665442 223578888764
No 145
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.56 E-value=13 Score=37.72 Aligned_cols=149 Identities=9% Similarity=0.106 Sum_probs=78.1
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~ 195 (507)
..++.+|+.+++-+.+. ..+..... ....-++ +|++....++ ..+++.+|+.+++...+... +. ..
T Consensus 223 ~~i~i~dl~~G~~~~l~---~~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~--~~ 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVA---SFPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS--NN 289 (429)
T ss_pred cEEEEEECCCCCeEEcc---CCCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC--Cc
Confidence 46899999888766654 22221111 1112233 5655433221 23599999999887766421 11 11
Q ss_pred ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEE
Q 010571 196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 275 (507)
Q Consensus 196 ~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d 275 (507)
.......++..++|...... ...+|.+|+.++.-..+...+ .........-+++.+++.+... ...+++++|
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~--g~~~I~~~d 361 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNG--GQQHIAKQD 361 (429)
T ss_pred CceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccC--CCceEEEEE
Confidence 22333344444444332211 257999999887766653211 1111122223455444433222 134689999
Q ss_pred cCcCeeEEecc
Q 010571 276 MTKLAWSILTS 286 (507)
Q Consensus 276 ~~~~~W~~~~~ 286 (507)
+.+..+..+..
T Consensus 362 l~~g~~~~Lt~ 372 (429)
T PRK03629 362 LATGGVQVLTD 372 (429)
T ss_pred CCCCCeEEeCC
Confidence 99998887653
No 146
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.47 E-value=10 Score=38.29 Aligned_cols=148 Identities=17% Similarity=0.143 Sum_probs=77.9
Q ss_pred cceEEEEECCCC-----cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc---EEEeecCC
Q 010571 116 SMIVRFIDLETN-----LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT---WDAVEVTQ 187 (507)
Q Consensus 116 ~~~~~~~d~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~---W~~~~~~g 187 (507)
.+.++.+|.... .|..+.. +..-..+.+...++.+|+....+.. ...+..+++.+.. |..+-+
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~-- 321 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDHHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLI-- 321 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEEETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE--
T ss_pred CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEc--
Confidence 468999999875 8888862 2223334455568899988764332 4478889887765 764332
Q ss_pred CCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE----CCEEEE-Eecc
Q 010571 188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI----DENWYI-VGGG 262 (507)
Q Consensus 188 ~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~----~~~l~v-~GG~ 262 (507)
.+.....-..+...+++|++.-=.+ ....|.++++. ..|..... |.+-.+.....- .+.+++ +.+.
T Consensus 322 -~~~~~~~l~~~~~~~~~Lvl~~~~~---~~~~l~v~~~~-~~~~~~~~----~~p~~g~v~~~~~~~~~~~~~~~~ss~ 392 (414)
T PF02897_consen 322 -PEDEDVSLEDVSLFKDYLVLSYREN---GSSRLRVYDLD-DGKESREI----PLPEAGSVSGVSGDFDSDELRFSYSSF 392 (414)
T ss_dssp ---SSSEEEEEEEEETTEEEEEEEET---TEEEEEEEETT--TEEEEEE----ESSSSSEEEEEES-TT-SEEEEEEEET
T ss_pred -CCCCceeEEEEEEECCEEEEEEEEC---CccEEEEEECC-CCcEEeee----cCCcceEEeccCCCCCCCEEEEEEeCC
Confidence 1112111222223355566543222 23578899987 33444321 222222211111 234443 3332
Q ss_pred CCCCCcceEEEEEcCcCeeEEe
Q 010571 263 DNNNGCQETIVLNMTKLAWSIL 284 (507)
Q Consensus 263 ~~~~~~~d~~~~d~~~~~W~~~ 284 (507)
. ....+|.||+.+++.+.+
T Consensus 393 ~---~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 393 T---TPPTVYRYDLATGELTLL 411 (414)
T ss_dssp T---EEEEEEEEETTTTCEEEE
T ss_pred C---CCCEEEEEECCCCCEEEE
Confidence 2 234789999999887654
No 147
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.42 E-value=10 Score=37.33 Aligned_cols=218 Identities=13% Similarity=0.026 Sum_probs=99.5
Q ss_pred CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571 37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116 (507)
Q Consensus 37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 116 (507)
++.-++|+|... ....++.+|+.++.-.++..-.. ....+-.++.-++.||++-. .
T Consensus 46 dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~g---------------~~~~g~~~s~~~~~~~Yv~~-------~ 101 (386)
T PF14583_consen 46 DGRKLLFASDFD--GNRNLYLLDLATGEITQLTDGPG---------------DNTFGGFLSPDDRALYYVKN-------G 101 (386)
T ss_dssp TS-EEEEEE-TT--SS-EEEEEETTT-EEEE---SS----------------B-TTT-EE-TTSSEEEEEET-------T
T ss_pred CCCEEEEEeccC--CCcceEEEEcccCEEEECccCCC---------------CCccceEEecCCCeEEEEEC-------C
Confidence 444455555322 34679999999999888765331 12333333333567766531 1
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC-CEEEEEcCc----CC-------------CCCccCcEEEEEcCCC
Q 010571 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGE----DR-------------SRKLLNDVHFLDLETM 178 (507)
Q Consensus 117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~----~~-------------~~~~~~~~~~~d~~t~ 178 (507)
..+...|+.|.+=+.+- ..|..-.++...+++ +.-.++|=. +. .......+...|+.++
T Consensus 102 ~~l~~vdL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 102 RSLRRVDLDTLEERVVY---EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp TEEEEEETTT--EEEEE---E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred CeEEEEECCcCcEEEEE---ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 35889999998765555 556555554444433 211121111 00 0123456888899999
Q ss_pred cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCC-CcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEE
Q 010571 179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFF-NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY 257 (507)
Q Consensus 179 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~-~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~ 257 (507)
+.+.+-... .-.+|....-.+..+++|---+.-... ..||..|........+. ...+...++|--...++..+
T Consensus 179 ~~~~v~~~~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~--~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 179 ERKVVFEDT----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH--RRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp -EEEEEEES----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-E
T ss_pred ceeEEEecC----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee--cCCCCcccccccccCCCCEE
Confidence 888775321 223454444445556666433222233 37999998877776663 33445566676666666543
Q ss_pred EEeccCCCCCcceEEEEEcCcCeeEEeccC
Q 010571 258 IVGGGDNNNGCQETIVLNMTKLAWSILTSV 287 (507)
Q Consensus 258 v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~ 287 (507)
.+-+......-.-+..||+.+..=+.+..+
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~ 282 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM 282 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEEE
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEeC
Confidence 332222222223466788887654444444
No 148
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=92.40 E-value=1.3 Score=44.62 Aligned_cols=16 Identities=19% Similarity=0.653 Sum_probs=12.5
Q ss_pred hhcccccCCCceeeee
Q 010571 488 ATSVQTQGSGGVWRWI 503 (507)
Q Consensus 488 ~~~~~~~~~~~~~~~~ 503 (507)
....|+.+++|.|-+.
T Consensus 434 ~p~vqeKK~s~IWqFF 449 (832)
T KOG2077|consen 434 NPAVQEKKRSSIWQFF 449 (832)
T ss_pred CchhhhhccccHHHHH
Confidence 4467889999999764
No 149
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=92.36 E-value=8.7 Score=35.15 Aligned_cols=184 Identities=15% Similarity=0.173 Sum_probs=83.7
Q ss_pred CCCCCeEEeccCCCCCC-------ccccceEEEECCEEEEEcCCCCCccCCc--eEEEECCCC-----ceeEeeeccccc
Q 010571 10 LPYDLWVTLPVSGARPS-------PRYKHAAAVFDQKLYIVGGSRNGRFLSD--VQVFDLRSL-----AWSNLRLETELD 75 (507)
Q Consensus 10 ~~~~~W~~~~~~~~~p~-------~r~~~~~~~~~~~lyv~GG~~~~~~~~~--~~~~d~~t~-----~W~~~~~~~~~~ 75 (507)
...+.|..-..++ .|. .-.-|+.|++++.-|.+|=-+++..... +..|...-+ .=+.++..-
T Consensus 112 F~~spW~~teL~~-~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey--- 187 (367)
T PF12217_consen 112 FHDSPWRITELGT-IASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEY--- 187 (367)
T ss_dssp STTS--EEEEEES--TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG---
T ss_pred cccCCceeeeccc-ccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhh---
Confidence 3467786443222 333 4567899999988888874333322222 222221111 111122111
Q ss_pred cCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCC--cccceEEEECCE
Q 010571 76 ADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA--RGGHSVTLVGSR 153 (507)
Q Consensus 76 ~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~--r~~~~~~~~~~~ 153 (507)
-....-.|+-..++.||+.--.......-+.+.+-+.....|+.+.. |.. ......+.+++.
T Consensus 188 ------------~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf----p~nvHhtnlPFakvgD~ 251 (367)
T PF12217_consen 188 ------------ERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF----PNNVHHTNLPFAKVGDV 251 (367)
T ss_dssp -------------TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTE
T ss_pred ------------ccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc----cccccccCCCceeeCCE
Confidence 11233445666799999976444333335567778888889999963 322 223345678999
Q ss_pred EEEEcCcCCC---------CCc---cCcEEEE-------EcCCCcEEEeec---CCCCCCCCCCceEEEEcCcEE-EEEe
Q 010571 154 LIIFGGEDRS---------RKL---LNDVHFL-------DLETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFG 210 (507)
Q Consensus 154 l~~~GG~~~~---------~~~---~~~~~~~-------d~~t~~W~~~~~---~g~~p~~r~~~~~~~~~~~~l-~i~G 210 (507)
||+||---.. .++ .....+. +++.-.|..+.- .|.....-.+.+.+++.++.| ||||
T Consensus 252 l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FG 331 (367)
T PF12217_consen 252 LYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFG 331 (367)
T ss_dssp EEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEE
T ss_pred EEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEec
Confidence 9999864211 111 1223333 333445665542 244444555556667778866 6899
Q ss_pred CCC
Q 010571 211 GCS 213 (507)
Q Consensus 211 G~~ 213 (507)
|-+
T Consensus 332 gED 334 (367)
T PF12217_consen 332 GED 334 (367)
T ss_dssp EB-
T ss_pred Ccc
Confidence 964
No 150
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.36 E-value=12 Score=36.74 Aligned_cols=234 Identities=15% Similarity=0.149 Sum_probs=111.3
Q ss_pred eEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEE---ECCEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571 55 VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK---WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 55 ~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~ 131 (507)
++.||..++++..+..... -...+... -++.||+..... .....-..+.++..+++.+.
T Consensus 17 ~~~~d~~~g~l~~~~~~~~-----------------~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAE-----------------GENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEETTTTEEEEEEEEEE-----------------SSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCceEeeeecC-----------------CCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEE
Confidence 4556668999988776432 11122222 256778875543 11112234555555578877
Q ss_pred eecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCCC-cEEEee----cC--CCCC---CCCCCceE
Q 010571 132 METSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVE----VT--QTPP---APRYDHSA 198 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~----~~--g~~p---~~r~~~~~ 198 (507)
+. ..+......+.+.+ +..||+.- +. .+.+.+|++... .-.... .. ++-| ..-..|.+
T Consensus 79 ~~---~~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 79 LN---SVPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp EE---EEEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred ee---eeccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 76 33322233333444 33566642 11 336888888663 222221 11 1111 11223555
Q ss_pred EEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCc--EEeeeecCCCCCCCc-ceEEEEEC-CEEEEEeccCCCCCcceEEE
Q 010571 199 ALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRA-GHAGITID-ENWYIVGGGDNNNGCQETIV 273 (507)
Q Consensus 199 ~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~-~~~~~~~~-~~l~v~GG~~~~~~~~d~~~ 273 (507)
....+ +++|+.. .+ .+.|++|++.... ....... ..|..-. .|..+.-+ ..+||+.-.+ +.+.+
T Consensus 150 ~~~pdg~~v~v~d-lG----~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v 218 (345)
T PF10282_consen 150 VFSPDGRFVYVPD-LG----ADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSV 218 (345)
T ss_dssp EE-TTSSEEEEEE-TT----TTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEE
T ss_pred EECCCCCEEEEEe-cC----CCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEE
Confidence 55555 4566542 11 3678999887665 5553221 1222111 12222223 4688886532 34555
Q ss_pred EEcC--cCeeEEeccCCCCCCCCCCC-CceEEEEEcCceEEEEEcccCCCcCCeEEEEEC
Q 010571 274 LNMT--KLAWSILTSVKGRNPLASEG-LSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL 330 (507)
Q Consensus 274 ~d~~--~~~W~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~ 330 (507)
|+.. +..++.+...+......... ......+.+++.+|||.-.. .+.+..|++
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~----~~sI~vf~~ 274 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG----SNSISVFDL 274 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT----TTEEEEEEE
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc----CCEEEEEEE
Confidence 5544 66776654332211111111 33444455566788885432 466777776
No 151
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.31 E-value=2.3 Score=38.87 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=27.5
Q ss_pred hhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHhHHHHHHHHH
Q 010571 428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----------TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 428 ~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-----------~~e~e~~~~~~~~~~~~~~~~ 486 (507)
+...+...++.+++.+.+.+..++..-+.+...++..+ ...+.++.+.+++..+..++|
T Consensus 57 ~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 57 EEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555555544443333333222 233345555555555555554
No 152
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.19 E-value=4.6 Score=33.38 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=8.6
Q ss_pred HHHHHhhHhhhhhhhhhHHHHH
Q 010571 433 LSSVQGQLVAERSRCFKLEAQI 454 (507)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~e~~~ 454 (507)
|..++.+++..+..+.+++...
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~ 82 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEA 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333
No 153
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.16 E-value=9.3 Score=35.02 Aligned_cols=145 Identities=13% Similarity=0.080 Sum_probs=66.2
Q ss_pred CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC-CEEEEEcCcCCCCCccCcEEEEEcCCCc
Q 010571 101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMT 179 (507)
Q Consensus 101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~d~~t~~ 179 (507)
+.+++.|+. ...+.+||+.+..-.... . .....-.++.... +.+++.|+. .+.+..||+.+.+
T Consensus 105 ~~~~~~~~~------~~~i~~~~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSSR------DKTIKVWDVETGKCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGK 168 (289)
T ss_pred CCEEEEecC------CCeEEEEECCCcEEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcC------CCcEEEEEccccc
Confidence 466666652 234888998865433222 1 1111112222233 344444431 2358889987543
Q ss_pred EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEEC-CEEEE
Q 010571 180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWYI 258 (507)
Q Consensus 180 W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~v 258 (507)
-...-. .....-.++....++..+++++.+ ..+.+||+.+......- . .....-.++.... +.+++
T Consensus 169 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 169 CVATLT----GHTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTL--R--GHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred cceeEe----cCccccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecch--h--hcCCceEEEEEcCCCcEEE
Confidence 222211 111122334444455455566542 56889998764433311 0 1111112222223 34555
Q ss_pred EeccCCCCCcceEEEEEcCcC
Q 010571 259 VGGGDNNNGCQETIVLNMTKL 279 (507)
Q Consensus 259 ~GG~~~~~~~~d~~~~d~~~~ 279 (507)
.++.++ .+.+||..+.
T Consensus 236 ~~~~~~-----~i~i~~~~~~ 251 (289)
T cd00200 236 SGSEDG-----TIRVWDLRTG 251 (289)
T ss_pred EEcCCC-----cEEEEEcCCc
Confidence 544222 4778887754
No 154
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=92.15 E-value=3.8 Score=35.58 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHh-HHHHHHHHHHHHHhHHHHHHHHHHhh
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES-SQTIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~-~~~~e~e~~~~~~~~~~~~~~~~~~~ 489 (507)
...+|+.+....++.+.+.+..++.++..++..+.... ++...+++.++ .+.|+.+...++.++.++..++.
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~----~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~--- 178 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQ----QVAARQQQARQEAQALEAERRAAQAQLRQLQRQVR--- 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33344444444444444444444444444433332222 22222222222 22444455555555555555543
Q ss_pred cccccCCCcee
Q 010571 490 SVQTQGSGGVW 500 (507)
Q Consensus 490 ~~~~~~~~~~~ 500 (507)
.+|.|...++|
T Consensus 179 ~Lq~q~~~~~~ 189 (192)
T PF11180_consen 179 QLQRQANEPIP 189 (192)
T ss_pred HHHHHhcCCCC
Confidence 33444444444
No 155
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.05 E-value=3.2 Score=37.37 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 010571 466 TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
.+++.+.+.-++..-||.|+.+
T Consensus 137 DfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 137 DFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 3444455555555556666654
No 156
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.02 E-value=2.3 Score=38.21 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=5.0
Q ss_pred HHHHHhHHHHHHH
Q 010571 472 QILRQQKSAFEQE 484 (507)
Q Consensus 472 ~~~~~~~~~~~~~ 484 (507)
+.+....+.|.+|
T Consensus 160 e~llesvqRLkdE 172 (333)
T KOG1853|consen 160 EVLLESVQRLKDE 172 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 157
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.01 E-value=1.8 Score=40.13 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=4.5
Q ss_pred HHHHHHHHhHH
Q 010571 469 NEVQILRQQKS 479 (507)
Q Consensus 469 ~e~~~~~~~~~ 479 (507)
++..++++++.
T Consensus 103 ~Ea~~lq~el~ 113 (246)
T PF00769_consen 103 EEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 158
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.00 E-value=1.8 Score=34.95 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=34.3
Q ss_pred hhhhHHHHHHhhccchhhHHhHHHHHhhHh---hhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHH
Q 010571 412 NSRFREKIDEVNSTHSELSKELSSVQGQLV---AERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~ 483 (507)
...++.++..+..+..+...|+-....+++ ...++..+++.++.+++++....- +...+.++|+-.++.+.+
T Consensus 32 ~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 32 LASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333332 233444556666666666655444 344455555555554443
No 159
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=91.93 E-value=8.7 Score=34.18 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=74.4
Q ss_pred eEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcE--EEeecC-CCCCCCCCCceEEEEcC-cEEEEEeCCCCCcCCCcE
Q 010571 146 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW--DAVEVT-QTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDL 221 (507)
Q Consensus 146 ~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W--~~~~~~-g~~p~~r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i 221 (507)
+++...+.+|+|-|. .++.|+...... ..+... +.+|. .--++....+ +.+|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~--~IDAa~~~~~~~~~yfFkg-------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS--PVDAAFERPDTGKIYFFKG-------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC--CccEEEEECCCCEEEEECC-------CEE
Confidence 344456889999763 366666541111 111110 01221 1223434443 77999987 568
Q ss_pred EEEECCCCcEEeeeecC--CCCC-CCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCC----C
Q 010571 222 HVLDLQTNEWSQPEIKG--DLVT-GRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN----P 292 (507)
Q Consensus 222 ~~~d~~~~~W~~~~~~~--~~p~-~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~----p 292 (507)
|+|+..+.....+.... ..|. +..-.++... ++++|+|-|. ..|.||..+.+... ..|... +
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~-------~y~ry~~~~~~v~~--~yP~~i~~~w~ 144 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD-------KYWRYDEKTQKMDP--GYPKLIETDFP 144 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC-------EEEEEeCCCccccC--CCCcchhhcCC
Confidence 88886653332221111 1111 1111233333 5789999772 57888876554321 011000 0
Q ss_pred CCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCC
Q 010571 293 LASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 334 (507)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~ 334 (507)
....+..+ ++.. .++.+|.|-| +..|.||..+..
T Consensus 145 g~p~~ida-a~~~-~~~~~yfF~g------~~y~~~d~~~~~ 178 (194)
T cd00094 145 GVPDKVDA-AFRW-LDGYYYFFKG------DQYWRFDPRSKE 178 (194)
T ss_pred CcCCCcce-eEEe-CCCcEEEEEC------CEEEEEeCccce
Confidence 00011112 2222 2247888887 568999987553
No 160
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.88 E-value=2 Score=45.89 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCc
Q 010571 464 SQTIENEVQILRQQKSAFEQEMERATSVQTQGSGG 498 (507)
Q Consensus 464 ~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (507)
.+.|+.|++-+.++++.++-++|=+++-.+.+|++
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEmeekG~~ 361 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEMEEKGSD 361 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34677777888888888777776665555544443
No 161
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=91.78 E-value=2.3 Score=42.76 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHH-HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhc-ccccCCCceee
Q 010571 445 SRCFKLEAQIAE-LQKMLESSQTIENEVQILRQQKSAFEQEMERATS-VQTQGSGGVWR 501 (507)
Q Consensus 445 ~~~~~~e~~~~e-~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 501 (507)
+..+++++++.+ +.+..++...+.+++..++...+++.++...+.. +.-.+.+|.||
T Consensus 139 ~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wG 197 (448)
T COG1322 139 EVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWG 197 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHH
Confidence 333444444444 4444555556667777777777777777554332 33488999998
No 162
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.77 E-value=5.1 Score=31.17 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=18.2
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHHHHHHHHHh
Q 010571 433 LSSVQGQLVAERSRCFKLEAQIAELQKMLES 463 (507)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~ 463 (507)
++.++.+......++.+++.++.++.+.+..
T Consensus 46 l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 46 LQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556666677666666665544
No 163
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=91.67 E-value=15 Score=36.43 Aligned_cols=275 Identities=15% Similarity=0.094 Sum_probs=127.3
Q ss_pred CCCeEeeCCCCC-eEEeccCCCCCCccccceEEEE---CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCc
Q 010571 3 SGSWHLELPYDL-WVTLPVSGARPSPRYKHAAAVF---DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADK 78 (507)
Q Consensus 3 ~~~~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~ 78 (507)
+.++++|..+.+ -.+++..+ .-|....+ +..+|+.+. + ..+.++|+.+++-..--..
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~------~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~~v~~i~~------- 76 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGG------APHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGKVVATIKV------- 76 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-ST------TEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSSEEEEEE--------
T ss_pred CEEEEEECCCCeEEEEEcCCC------CceeEEEecCCCCEEEEEcC-C-----CeEEEEECCcccEEEEEec-------
Confidence 345677777654 33444211 12544433 567999853 2 3688999999873322111
Q ss_pred cccCCccCCCCCccceeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC----CCcccceEEEECCE
Q 010571 79 TEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP----VARGGHSVTLVGSR 153 (507)
Q Consensus 79 ~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p----~~r~~~~~~~~~~~ 153 (507)
+...++++. -+++.++.+.+. .+.+.++|..|.+=...-+.+.++ .+|...-.....+.
T Consensus 77 -----------G~~~~~i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 77 -----------GGNPRGIAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp -----------SSEEEEEEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred -----------CCCcceEEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCC
Confidence 233344433 355544444433 335889998887544332222222 23332222223445
Q ss_pred EEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571 154 LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 233 (507)
Q Consensus 154 l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~ 233 (507)
.|++.-.+ .+.++..|....+=.... .....+.-|-+....+++.|+.+-. ..|.+-.+|..++.-..
T Consensus 141 ~fVv~lkd-----~~~I~vVdy~d~~~~~~~---~i~~g~~~~D~~~dpdgry~~va~~----~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 141 EFVVNLKD-----TGEIWVVDYSDPKNLKVT---TIKVGRFPHDGGFDPDGRYFLVAAN----GSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp EEEEEETT-----TTEEEEEETTTSSCEEEE---EEE--TTEEEEEE-TTSSEEEEEEG----GGTEEEEEETTTTEEEE
T ss_pred EEEEEEcc-----CCeEEEEEecccccccee---eecccccccccccCcccceeeeccc----ccceeEEEeeccceEEE
Confidence 56654332 446888887654321111 1233555666666666545544322 23688899998887655
Q ss_pred eeecCCCCCCCcceEEEEEC-CEEEEEeccCCCCCcceEEEEE----cCcCeeEEeccCCCCCCCCCCCCceEEEEEcCc
Q 010571 234 PEIKGDLVTGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLN----MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE 308 (507)
Q Consensus 234 ~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~d~~~~d----~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~ 308 (507)
.-..+..|.+.......-.. +.++..+|.... .....--+ .....|+.+..++.. +..+.....++.
T Consensus 209 ~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~--~~~~ig~~~v~v~d~~~wkvv~~I~~~------G~glFi~thP~s 280 (369)
T PF02239_consen 209 LIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF--AIPLIGTDPVSVHDDYAWKVVKTIPTQ------GGGLFIKTHPDS 280 (369)
T ss_dssp EEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS--EEEEEE--TTT-STTTBTSEEEEEE-S------SSS--EE--TT-
T ss_pred EeeccccccccccccccCCCcceEEeeccccce--ecccccCCccccchhhcCeEEEEEECC------CCcceeecCCCC
Confidence 33335445443332322222 234555443211 00111122 233568777665432 223445566777
Q ss_pred eEEEEEcccCCCcCCeEEEEECCCC
Q 010571 309 HHLVAFGGYNGKYNNEVFVMRLKPR 333 (507)
Q Consensus 309 ~~l~v~GG~~~~~~~~v~~~~~~~~ 333 (507)
.++++---. +.....+.++|..+.
T Consensus 281 ~~vwvd~~~-~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 281 RYVWVDTFL-NPDADTVQVIDKKTL 304 (369)
T ss_dssp SEEEEE-TT--SSHT-EEEEECCGT
T ss_pred ccEEeeccC-CCCCceEEEEECcCc
Confidence 888884211 122678999998765
No 164
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.66 E-value=3.1 Score=41.12 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=22.3
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhh
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL 429 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 429 (507)
+..+..++...+.+....+.....+....++.|..-+.++...
T Consensus 148 ~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~ 190 (420)
T COG4942 148 LAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTL 190 (420)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555554555555555555555555555554433
No 165
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.59 E-value=3.9 Score=37.74 Aligned_cols=77 Identities=29% Similarity=0.382 Sum_probs=43.0
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh-------hhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-------RSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKS 479 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~-------~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~ 479 (507)
+.......+...+..+.+++.++..+...+..+ ..+....+..+..++++++... ..++....|.+++.
T Consensus 128 ~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id 207 (237)
T PF00261_consen 128 ELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEID 207 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444445555555544444333 2333455566666666666555 56667777777777
Q ss_pred HHHHHHHH
Q 010571 480 AFEQEMER 487 (507)
Q Consensus 480 ~~~~~~~~ 487 (507)
.++.++..
T Consensus 208 ~le~eL~~ 215 (237)
T PF00261_consen 208 RLEDELEK 215 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 166
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.54 E-value=1.3 Score=44.28 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=4.5
Q ss_pred HHHHHHHhHHHH
Q 010571 470 EVQILRQQKSAF 481 (507)
Q Consensus 470 e~~~~~~~~~~~ 481 (507)
++++++++++++
T Consensus 117 ~~~ql~~~~~~~ 128 (472)
T TIGR03752 117 EIEQLKSERQQL 128 (472)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 167
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.50 E-value=1.7 Score=47.83 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhh
Q 010571 466 TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~~~~~ 489 (507)
+.+.++.+|.+.++..+.++++..
T Consensus 444 ~~~~ei~~L~~~~~~~~~~l~e~~ 467 (1293)
T KOG0996|consen 444 KCQTEIEQLEELLEKEERELDEIL 467 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444433
No 168
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.49 E-value=3.6 Score=38.78 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=4.4
Q ss_pred HHhhHHHHHHH
Q 010571 391 IDAIKEDKRVL 401 (507)
Q Consensus 391 ~~~l~~~~~~~ 401 (507)
+.+++.++..+
T Consensus 86 l~~l~keKe~L 96 (310)
T PF09755_consen 86 LQQLKKEKETL 96 (310)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 169
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.43 E-value=3 Score=40.90 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=26.1
Q ss_pred hhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHH
Q 010571 388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK 431 (507)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 431 (507)
+..+++++.-+..++..+.....+..++...+....+.++..++
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk 262 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREK 262 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566676666666666666666666666655555544444433
No 170
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=91.43 E-value=14 Score=36.97 Aligned_cols=189 Identities=10% Similarity=0.095 Sum_probs=95.0
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCcccceEEE--ECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010571 116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 193 (507)
Q Consensus 116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r 193 (507)
+.++++++...+.-+.+..-| |...-.+- -++.|++.--.-.+-.....++..+....+...+. -
T Consensus 106 taDly~v~~e~Ge~kRiTyfG-----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Ln--------l 172 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFG-----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLN--------L 172 (668)
T ss_pred cccEEEEeCCCCcEEEEEEec-----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeecc--------C
Confidence 557999999999888876433 22211111 24556655433222111223343433333333222 1
Q ss_pred CCceEEEEcCcEEEEEeCCC---------CCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCC
Q 010571 194 YDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN 264 (507)
Q Consensus 194 ~~~~~~~~~~~~l~i~GG~~---------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 264 (507)
.-.+..++.++ +.++|-.. .++....+|+=.....+++++ -+++...+ +-+++++++|.+.-+.+
T Consensus 173 Gpathiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~---vdl~~~vS--~PmIV~~RvYFlsD~eG 246 (668)
T COG4946 173 GPATHIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKF---VDLDGNVS--SPMIVGERVYFLSDHEG 246 (668)
T ss_pred CceeeEEEeCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeee---eecCCCcC--CceEEcceEEEEecccC
Confidence 12345566788 45554321 112334566655555466664 22322221 33667899999865443
Q ss_pred CCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCCCCCccc
Q 010571 265 NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIF 341 (507)
Q Consensus 265 ~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~~~~~~ 341 (507)
...+|.-|+..+.-++=.++...-| ++ +..++...++-.|| ++|.|||.+.+-+...+.
T Consensus 247 ---~GnlYSvdldGkDlrrHTnFtdYY~----R~----~nsDGkrIvFq~~G-------dIylydP~td~lekldI~ 305 (668)
T COG4946 247 ---VGNLYSVDLDGKDLRRHTNFTDYYP----RN----ANSDGKRIVFQNAG-------DIYLYDPETDSLEKLDIG 305 (668)
T ss_pred ---ccceEEeccCCchhhhcCCchhccc----cc----cCCCCcEEEEecCC-------cEEEeCCCcCcceeeecC
Confidence 3456776666554444333332211 11 12334333444455 799999988887766654
No 171
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.43 E-value=0.84 Score=40.69 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=11.9
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA 452 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~ 452 (507)
+..++..+-.+...+.....+..+++.++......+.+++.++...+..+..+...+.+++.
T Consensus 83 Lael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 83 LAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444444444443333333333333333333333
No 172
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=91.43 E-value=1.6 Score=41.72 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=20.8
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhh
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS 445 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 445 (507)
-...|+..|+++-+++.+++++..+.++.++.-++
T Consensus 286 lar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qe 320 (442)
T PF06637_consen 286 LARSLRAGIERVARENSDLQRQKLEAEQGLQASQE 320 (442)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777766666665555544333
No 173
>PRK13684 Ycf48-like protein; Provisional
Probab=91.38 E-value=15 Score=35.87 Aligned_cols=198 Identities=9% Similarity=0.049 Sum_probs=92.4
Q ss_pred CCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCC
Q 010571 12 YDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPP 90 (507)
Q Consensus 12 ~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (507)
-..|+.+......|. .......+ ++.+|+.|. ...+++-+-.-.+|..+.... .
T Consensus 118 G~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~------~G~i~~S~DgG~tW~~~~~~~-----------------~ 172 (334)
T PRK13684 118 GKNWTRIPLSEKLPG--SPYLITALGPGTAEMATN------VGAIYRTTDGGKNWEALVEDA-----------------A 172 (334)
T ss_pred CCCCeEccCCcCCCC--CceEEEEECCCcceeeec------cceEEEECCCCCCceeCcCCC-----------------c
Confidence 358888863211221 22223333 344565554 123444444456898876422 1
Q ss_pred ccceeeEEECCEEEEEcccCCCCCCcceEEE-EECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccC
Q 010571 91 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRF-IDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLN 168 (507)
Q Consensus 91 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~ 168 (507)
-..+.+....+..|++.|... .++. .|....+|..+. .+..+.-++++.. ++.++++|...
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G------- 235 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG------- 235 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC-------
Confidence 223444444444444433222 1332 234446799885 2333444444443 56788876532
Q ss_pred cEEEEE-cC-CCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcc
Q 010571 169 DVHFLD-LE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG 246 (507)
Q Consensus 169 ~~~~~d-~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~ 246 (507)
...+. .+ -.+|+.+... ........++++...++.++++|..+ -++.-.-...+|+.+...... +...
T Consensus 236 -~~~~~s~d~G~sW~~~~~~-~~~~~~~l~~v~~~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~~~~~~--~~~~ 305 (334)
T PRK13684 236 -QIRFNDPDDLESWSKPIIP-EITNGYGYLDLAYRTPGEIWAGGGNG------TLLVSKDGGKTWEKDPVGEEV--PSNF 305 (334)
T ss_pred -EEEEccCCCCCccccccCC-ccccccceeeEEEcCCCCEEEEcCCC------eEEEeCCCCCCCeECCcCCCC--Ccce
Confidence 23342 22 3489976421 01011222334444566688877642 122222234589986421222 2234
Q ss_pred eEEEEE-CCEEEEEec
Q 010571 247 HAGITI-DENWYIVGG 261 (507)
Q Consensus 247 ~~~~~~-~~~l~v~GG 261 (507)
+.++.. +++.|+.|.
T Consensus 306 ~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 306 YKIVFLDPEKGFVLGQ 321 (334)
T ss_pred EEEEEeCCCceEEECC
Confidence 445544 566777664
No 174
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.36 E-value=1.4 Score=44.69 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=11.5
Q ss_pred hhHHhHHHHHhhHhhhhhhhhhHHHHHHHHH
Q 010571 428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQ 458 (507)
Q Consensus 428 ~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~ 458 (507)
.+++.+..+..+.+..+++++.++++.-+++
T Consensus 291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 175
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.34 E-value=3.8 Score=38.70 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=17.9
Q ss_pred hhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571 428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 428 ~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
.+..+|....+++...++.+..+..++.++++++++.
T Consensus 217 ~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 217 SLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555555554444
No 176
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.32 E-value=2 Score=46.37 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh
Q 010571 467 IENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 467 ~e~e~~~~~~~~~~~~~~~~~~ 488 (507)
++.|..+++.+...|+.++++.
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~e 692 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEKE 692 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555443
No 177
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.16 E-value=2.1 Score=46.78 Aligned_cols=9 Identities=22% Similarity=-0.159 Sum_probs=4.7
Q ss_pred CCceeeeec
Q 010571 496 SGGVWRWIA 504 (507)
Q Consensus 496 ~~~~~~~~~ 504 (507)
..|-.-+|.
T Consensus 626 ~~Gd~V~v~ 634 (771)
T TIGR01069 626 KIGDKVRIR 634 (771)
T ss_pred CCCCEEEEc
Confidence 455555544
No 178
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.12 E-value=0.75 Score=47.63 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=33.3
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
+...+++++..+.+.++..+++++.--. .+.+-+-+.++++.+.++....+.....+..++++..+++.+..+++++++
T Consensus 106 ~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarq 184 (916)
T KOG0249|consen 106 DLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQ 184 (916)
T ss_pred hhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333333222 333333334444444444444444444444444444444444444444433
No 179
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.04 E-value=2.1 Score=46.87 Aligned_cols=7 Identities=14% Similarity=-0.476 Sum_probs=2.8
Q ss_pred Cceeeee
Q 010571 497 GGVWRWI 503 (507)
Q Consensus 497 ~~~~~~~ 503 (507)
.|-.-++
T Consensus 639 ~Gd~V~v 645 (782)
T PRK00409 639 VGDEVKY 645 (782)
T ss_pred CCCEEEE
Confidence 3444333
No 180
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.98 E-value=15 Score=35.15 Aligned_cols=244 Identities=12% Similarity=0.134 Sum_probs=105.0
Q ss_pred CCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECC-CCceeEeeeccccccCccccCCccCCC
Q 010571 11 PYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLRLETELDADKTEDSGLLEVL 88 (507)
Q Consensus 11 ~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~-t~~W~~~~~~~~~~~~~~~~~~~~~~p 88 (507)
....|+.+. .|....-..+..+ .+.-|++|-. ........ -.+|........ .+
T Consensus 4 ~~~~W~~v~----l~t~~~l~dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~-------------~~ 59 (302)
T PF14870_consen 4 SGNSWQQVS----LPTDKPLLDVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLD-------------NP 59 (302)
T ss_dssp SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETT-------TEEEEESSTTSS-EE-----S---------------
T ss_pred cCCCcEEee----cCCCCceEEEEEecCCEEEEEecC-------CEEEEECCCCccccccccCCC-------------cc
Confidence 467899997 3444444444444 4678888752 12222222 247988764321 11
Q ss_pred CCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCcc
Q 010571 89 PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLL 167 (507)
Q Consensus 89 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~ 167 (507)
.....+++...++..|++|... .++.-.-.-.+|+.+... .+.+-..+.+..+ ++.++++|..
T Consensus 60 ~~~~l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~------- 123 (302)
T PF14870_consen 60 FDYHLNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR------- 123 (302)
T ss_dssp ---EEEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT-------
T ss_pred ceeeEEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC-------
Confidence 1223344555688899887421 133333345689998642 2233333444444 4577776542
Q ss_pred CcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcce
Q 010571 168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 247 (507)
Q Consensus 168 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~ 247 (507)
..++.=.-.-.+|+.+... ..-....+....++.+++++..+ +-+...|+-...|.... .+..|.-.
T Consensus 124 G~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~~----r~~~~riq 190 (302)
T PF14870_consen 124 GAIYRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPHN----RNSSRRIQ 190 (302)
T ss_dssp --EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEEE------SSS-EE
T ss_pred CcEEEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECcc-----cEEEEecCCCccceEEc----cCccceeh
Confidence 2344444455689988631 11222334445677666666543 22345677777898853 34445544
Q ss_pred EEEEE-CCEEEEEeccCCCCCcceEEEEE--cCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccC
Q 010571 248 AGITI-DENWYIVGGGDNNNGCQETIVLN--MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 318 (507)
Q Consensus 248 ~~~~~-~~~l~v~GG~~~~~~~~d~~~~d--~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~ 318 (507)
++... ++.++++. .+. .+..-+ -...+|.+-. . |....++.+..+...+.+.+++.||..
T Consensus 191 ~~gf~~~~~lw~~~--~Gg----~~~~s~~~~~~~~w~~~~-~----~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 191 SMGFSPDGNLWMLA--RGG----QIQFSDDPDDGETWSEPI-I----PIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEEE-TTS-EEEEE--TTT----EEEEEE-TTEEEEE---B------TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred hceecCCCCEEEEe--CCc----EEEEccCCCCcccccccc-C----CcccCceeeEEEEecCCCCEEEEeCCc
Confidence 54444 56777764 111 233333 3455677621 1 223335544444555556889988853
No 181
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.94 E-value=14 Score=34.71 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=69.9
Q ss_pred CCcccc---ceEEEECCEEEEEcCCCC-----------------CccCCceEEEECCCCceeEeeeccccccCccccCCc
Q 010571 25 PSPRYK---HAAAVFDQKLYIVGGSRN-----------------GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84 (507)
Q Consensus 25 p~~r~~---~~~~~~~~~lyv~GG~~~-----------------~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~ 84 (507)
|.||++ |.++..-+.+..|||+-. ....+.|..||..+++-+.+-...-
T Consensus 30 ~~P~SGGDTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesi----------- 98 (339)
T PF09910_consen 30 PPPTSGGDTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESI----------- 98 (339)
T ss_pred CCCCCCCccceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEeccc-----------
Confidence 555553 444444455566787321 1223568999999887555543221
Q ss_pred cCCCCCccceee-EE---ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCc
Q 010571 85 LEVLPPMSDHCM-VK---WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGE 160 (507)
Q Consensus 85 ~~~p~~r~~~~~-~~---~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~ 160 (507)
..+..-++-.. .. +++.||+.=+. ... .--+|..|..++.=+.+. .-|... .+.+.+..+|-+
T Consensus 99 -h~~~~WaGEVSdIlYdP~~D~LLlAR~D-Gh~--nLGvy~ldr~~g~~~~L~---~~ps~K---G~~~~D~a~F~i--- 165 (339)
T PF09910_consen 99 -HDKTKWAGEVSDILYDPYEDRLLLARAD-GHA--NLGVYSLDRRTGKAEKLS---SNPSLK---GTLVHDYACFGI--- 165 (339)
T ss_pred -CCccccccchhheeeCCCcCEEEEEecC-Ccc--eeeeEEEcccCCceeecc---CCCCcC---ceEeeeeEEEec---
Confidence 11111111111 11 15777776432 111 224888898999888776 334332 122223333322
Q ss_pred CCCCCccCcEEEEEcCCCcE
Q 010571 161 DRSRKLLNDVHFLDLETMTW 180 (507)
Q Consensus 161 ~~~~~~~~~~~~~d~~t~~W 180 (507)
.....-.+.+.+||+.+++|
T Consensus 166 ~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 166 NNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred cccccCCceEEEEEccCCeE
Confidence 22222366899999999999
No 182
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.92 E-value=1.6 Score=46.64 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=19.0
Q ss_pred HhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHH
Q 010571 421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 421 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
.+..+++.+..|+.+++...+.+.+++...|..+.+++++
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444455555555555555554
No 183
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.89 E-value=6.7 Score=31.67 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=17.5
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL 429 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 429 (507)
+..+..+...++..+.....+...+.++|-.+..++++.
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444455555555555444443
No 184
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=90.84 E-value=2.3 Score=49.46 Aligned_cols=6 Identities=17% Similarity=0.158 Sum_probs=2.4
Q ss_pred EEEEcC
Q 010571 40 LYIVGG 45 (507)
Q Consensus 40 lyv~GG 45 (507)
+.++-|
T Consensus 25 ~~~i~G 30 (1179)
T TIGR02168 25 ITGIVG 30 (1179)
T ss_pred cEEEEC
Confidence 334444
No 185
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.83 E-value=4.5 Score=39.09 Aligned_cols=66 Identities=26% Similarity=0.424 Sum_probs=29.4
Q ss_pred HHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH--------HHHHHHHHHHHhHHHHHHH
Q 010571 419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--------TIENEVQILRQQKSAFEQE 484 (507)
Q Consensus 419 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~--------~~e~e~~~~~~~~~~~~~~ 484 (507)
+.....++.+....++..+.+++.++.+...++..+.+++.++.... .++.++.+++.+.+....+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444443333222 4445555555555444433
No 186
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.82 E-value=2 Score=39.69 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=9.6
Q ss_pred hhhhhhHHHHHHhhccchhhH
Q 010571 410 TENSRFREKIDEVNSTHSELS 430 (507)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~ 430 (507)
.+...|...++.++..++..+
T Consensus 36 ~e~~~l~rri~~lE~~le~~e 56 (237)
T PF00261_consen 36 AEVASLQRRIQLLEEELERAE 56 (237)
T ss_dssp HHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 344444444544444444433
No 187
>PRK03629 tolB translocation protein TolB; Provisional
Probab=90.79 E-value=21 Score=36.35 Aligned_cols=190 Identities=10% Similarity=0.002 Sum_probs=94.8
Q ss_pred CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~ 131 (507)
..++++|+.++.-..+..... ........-+ .+|++...... ..+++.+|..++....
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~-----------------~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~ 281 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPR-----------------HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQ 281 (429)
T ss_pred cEEEEEECCCCCeEEccCCCC-----------------CcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEE
Confidence 468899998877555443221 1111122223 45655432211 2359999999988777
Q ss_pred eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571 132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 210 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G 210 (507)
+.. .+... ......-++ .|++...... ...++.+|+.++.-..+...+. . ........++..+++.
T Consensus 282 lt~---~~~~~-~~~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~----~-~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 282 VTD---GRSNN-TEPTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGS----Q-NQDADVSSDGKFMVMV 348 (429)
T ss_pred ccC---CCCCc-CceEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCC----C-ccCEEECCCCCEEEEE
Confidence 642 11111 111111234 4544332211 3478999998887766642211 1 1122333444344443
Q ss_pred CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEec
Q 010571 211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 285 (507)
Q Consensus 211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~ 285 (507)
+.... ...++.+|+.++.++.+... . ........-+++.+++.+..+. ...+++.+.+...=..++
T Consensus 349 ~~~~g--~~~I~~~dl~~g~~~~Lt~~--~---~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 349 SSNGG--QQHIAKQDLATGGVQVLTDT--F---LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred EccCC--CceEEEEECCCCCeEEeCCC--C---CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEECc
Confidence 33222 24689999999988876421 1 1111223346666766654332 234666676544433343
No 188
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.78 E-value=2 Score=49.69 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHH
Q 010571 393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS 434 (507)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~ 434 (507)
.++.+...++..+.......+++.+.+......+++..+++.
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~ 645 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREIT 645 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333444444444444444444433333
No 189
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=90.78 E-value=2.6 Score=47.00 Aligned_cols=6 Identities=67% Similarity=0.844 Sum_probs=2.4
Q ss_pred CEEEEE
Q 010571 101 TKLLIL 106 (507)
Q Consensus 101 ~~iyv~ 106 (507)
+.+|++
T Consensus 87 ~~lyIV 92 (1021)
T PTZ00266 87 QKLYIL 92 (1021)
T ss_pred CEEEEE
Confidence 344443
No 190
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=90.75 E-value=2.4 Score=41.73 Aligned_cols=29 Identities=10% Similarity=0.291 Sum_probs=12.6
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhh
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQ 439 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~ 439 (507)
++.++...++.+.+.+...++.|++-+.+
T Consensus 384 EKnd~~k~lqnLqe~la~tqk~LqEsr~e 412 (527)
T PF15066_consen 384 EKNDIEKTLQNLQEALANTQKHLQESRNE 412 (527)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444443333
No 191
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.75 E-value=1.8 Score=45.04 Aligned_cols=49 Identities=22% Similarity=0.385 Sum_probs=28.8
Q ss_pred HhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010571 431 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 431 ~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~ 479 (507)
..+...+.++..++.++..++.++++.++++......+.+..+++++.+
T Consensus 317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~ 365 (498)
T TIGR03007 317 IELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYE 365 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3444445555555666666666666666666655555555555555554
No 192
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.67 E-value=13 Score=33.97 Aligned_cols=186 Identities=16% Similarity=0.145 Sum_probs=82.8
Q ss_pred CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC-CEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571 100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETM 178 (507)
Q Consensus 100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~d~~t~ 178 (507)
++..+++|+. ...+.+||..++...... ... ...-.++.... +.+++.|+. .+.+..||+.+.
T Consensus 62 ~~~~l~~~~~------~~~i~i~~~~~~~~~~~~---~~~-~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSS------DKTIRLWDLETGECVRTL---TGH-TSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcC------CCeEEEEEcCcccceEEE---ecc-CCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCc
Confidence 3445566654 234888888875322221 101 11112222222 356666652 236889998755
Q ss_pred cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCC-cceEEEEE-CCEE
Q 010571 179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR-AGHAGITI-DENW 256 (507)
Q Consensus 179 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r-~~~~~~~~-~~~l 256 (507)
+-...-. .....-.++....++.+++.|+.+ ..+.+||+.+..-... ..... .-.++... ++..
T Consensus 126 ~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 126 KCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVAT-----LTGHTGEVNSVAFSPDGEK 191 (289)
T ss_pred EEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccccccee-----EecCccccceEEECCCcCE
Confidence 4333221 111112233333434455444422 4688898865432211 11111 11122222 3335
Q ss_pred EEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571 257 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 332 (507)
Q Consensus 257 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~ 332 (507)
+++++.+ ..+.+||+.+..... .+... ......+....+..+++.++.+ ..+..|++..
T Consensus 192 l~~~~~~-----~~i~i~d~~~~~~~~--~~~~~------~~~i~~~~~~~~~~~~~~~~~~----~~i~i~~~~~ 250 (289)
T cd00200 192 LLSSSSD-----GTIKLWDLSTGKCLG--TLRGH------ENGVNSVAFSPDGYLLASGSED----GTIRVWDLRT 250 (289)
T ss_pred EEEecCC-----CcEEEEECCCCceec--chhhc------CCceEEEEEcCCCcEEEEEcCC----CcEEEEEcCC
Confidence 6666542 247788887643322 12110 1122223333334566655533 4577777654
No 193
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.51 E-value=3.9 Score=38.14 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 408 VRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 408 ~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
-..+..+|..++..++++++.++...+..+..+..+++++.++++++.++++-.+++.
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666666666666666666666666666666666555555
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=90.40 E-value=14 Score=33.66 Aligned_cols=71 Identities=24% Similarity=0.231 Sum_probs=40.8
Q ss_pred eEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCE-EEEEcCcCCCCCccCcEEEEE
Q 010571 96 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLD 174 (507)
Q Consensus 96 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-l~~~GG~~~~~~~~~~~~~~d 174 (507)
+..-.|.|+..||. ..++..|+.+++.+..- .| ..-+-|+.+.-+.. =++-|+-++ .+-+.|
T Consensus 122 ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~-rG---HtDYvH~vv~R~~~~qilsG~EDG------tvRvWd 184 (325)
T KOG0649|consen 122 LDPSENSILFAGGD-------GVIYQVDLEDGRIQREY-RG---HTDYVHSVVGRNANGQILSGAEDG------TVRVWD 184 (325)
T ss_pred eccCCCcEEEecCC-------eEEEEEEecCCEEEEEE-cC---CcceeeeeeecccCcceeecCCCc------cEEEEe
Confidence 33357899999983 35899999999876653 11 11223344332322 233344332 477788
Q ss_pred cCCCcEEEe
Q 010571 175 LETMTWDAV 183 (507)
Q Consensus 175 ~~t~~W~~~ 183 (507)
+.|.+-..+
T Consensus 185 ~kt~k~v~~ 193 (325)
T KOG0649|consen 185 TKTQKHVSM 193 (325)
T ss_pred ccccceeEE
Confidence 888765443
No 195
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.39 E-value=4.8 Score=38.94 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.5
Q ss_pred HHHHHH
Q 010571 480 AFEQEM 485 (507)
Q Consensus 480 ~~~~~~ 485 (507)
+|+.|+
T Consensus 294 ~Ld~EI 299 (312)
T PF00038_consen 294 ALDAEI 299 (312)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 444443
No 196
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.37 E-value=2.8 Score=49.62 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010571 466 TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~~ 486 (507)
+++++...+..+++.+.++++
T Consensus 1122 K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 197
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.36 E-value=2.4 Score=45.74 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=7.8
Q ss_pred EEECCEEEEEcC
Q 010571 34 AVFDQKLYIVGG 45 (507)
Q Consensus 34 ~~~~~~lyv~GG 45 (507)
+..++.||+|-+
T Consensus 38 ~~~d~~L~vWd~ 49 (717)
T PF10168_consen 38 ACRDGDLFVWDS 49 (717)
T ss_pred EEeCCEEEEEEC
Confidence 334777777766
No 198
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.36 E-value=20 Score=35.54 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=82.1
Q ss_pred EEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCC
Q 010571 34 AVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK 111 (507)
Q Consensus 34 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 111 (507)
+..++.+|+... ...++.+|+.+++ |........ .........-+++||+-....
T Consensus 65 ~~~dg~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~~~----------------~~~~~~~~~~~G~i~~g~~~g- 121 (370)
T COG1520 65 ADGDGTVYVGTR------DGNIFALNPDTGLVKWSYPLLGAV----------------AQLSGPILGSDGKIYVGSWDG- 121 (370)
T ss_pred EeeCCeEEEecC------CCcEEEEeCCCCcEEecccCcCcc----------------eeccCceEEeCCeEEEecccc-
Confidence 556888888611 1279999999987 865443100 111111222267766654322
Q ss_pred CCCCcceEEEEECCCC--cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCC--cEEEeecCC
Q 010571 112 KSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQ 187 (507)
Q Consensus 112 ~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g 187 (507)
.++.||..++ .|...... . ++..-..+..++.+|+.. ..+.++.+|..++ .|..-...+
T Consensus 122 ------~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~ 184 (370)
T COG1520 122 ------KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP 184 (370)
T ss_pred ------eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc
Confidence 5999999655 57766532 1 333333344445555542 1346899988765 587554322
Q ss_pred CCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc--EEe
Q 010571 188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQ 233 (507)
Q Consensus 188 ~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~ 233 (507)
.+ .+.....+ +.++.+| +|..+ . ...++.+|+.+++ |..
T Consensus 185 -~~-~~~~~~~~-~~~~~vy-~~~~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 185 -LS-LSIYGSPA-IASGTVY-VGSDG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred -cc-cccccCce-eecceEE-EecCC--C-cceEEEEEccCCcEeeee
Confidence 12 22222222 4466344 44332 1 2368999987664 774
No 199
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=90.25 E-value=1.1 Score=45.06 Aligned_cols=7 Identities=14% Similarity=0.397 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 010571 470 EVQILRQ 476 (507)
Q Consensus 470 e~~~~~~ 476 (507)
+++|.|.
T Consensus 136 ~ieqaq~ 142 (907)
T KOG2264|consen 136 EIEQAQR 142 (907)
T ss_pred HHHHHHH
Confidence 3333333
No 200
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.09 E-value=2.9 Score=48.32 Aligned_cols=6 Identities=17% Similarity=0.241 Sum_probs=2.7
Q ss_pred CCEEEE
Q 010571 253 DENWYI 258 (507)
Q Consensus 253 ~~~l~v 258 (507)
..+++.
T Consensus 101 ~Rri~r 106 (1163)
T COG1196 101 TRRIYR 106 (1163)
T ss_pred EEEEEE
Confidence 344444
No 201
>PTZ00421 coronin; Provisional
Probab=90.08 E-value=26 Score=36.34 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=70.5
Q ss_pred CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEE-ECCEEEEEcCcCCCCCccCcEEEEEcCCCc
Q 010571 101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMT 179 (507)
Q Consensus 101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~ 179 (507)
+.+++.||.+ ..+.++|+.++.-...-. ..... -.++.. .++.+++.|+.+ ..+.+||+.+++
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l~--~h~~~--V~sla~spdG~lLatgs~D------g~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVEVIK--CHSDQ--ITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEEEEc--CCCCc--eEEEEEECCCCEEEEecCC------CEEEEEECCCCc
Confidence 4577777643 248888988764322110 11111 112222 256677777653 358899998765
Q ss_pred EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEE
Q 010571 180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWY 257 (507)
Q Consensus 180 W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~ 257 (507)
-... ..+. ...+. ..++...++..++..|.+.. .-..+.+||+.+..-.. .. .... ......+..+ ++.++
T Consensus 202 ~v~t-l~~H-~~~~~-~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p~-~~-~~~d-~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 202 IVSS-VEAH-ASAKS-QRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASPY-ST-VDLD-QSSALFIPFFDEDTNLL 274 (493)
T ss_pred EEEE-EecC-CCCcc-eEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCce-eE-eccC-CCCceEEEEEcCCCCEE
Confidence 3211 1111 11111 11222333334444453321 12468888886533110 00 0000 0111122233 45666
Q ss_pred EEeccCCCCCcceEEEEEcCcCeeEE
Q 010571 258 IVGGGDNNNGCQETIVLNMTKLAWSI 283 (507)
Q Consensus 258 v~GG~~~~~~~~d~~~~d~~~~~W~~ 283 (507)
++||... ..+.+||+.+.....
T Consensus 275 ~lggkgD----g~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 275 YIGSKGE----GNIRCFELMNERLTF 296 (493)
T ss_pred EEEEeCC----CeEEEEEeeCCceEE
Confidence 6766321 146778877766544
No 202
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.07 E-value=4 Score=41.34 Aligned_cols=9 Identities=0% Similarity=0.113 Sum_probs=3.3
Q ss_pred HHHhHHHHH
Q 010571 474 LRQQKSAFE 482 (507)
Q Consensus 474 ~~~~~~~~~ 482 (507)
+++++...+
T Consensus 251 ~~~~l~~~~ 259 (423)
T TIGR01843 251 AQARLAELR 259 (423)
T ss_pred HHHHHHHHH
Confidence 333333333
No 203
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.04 E-value=2.8 Score=46.31 Aligned_cols=7 Identities=57% Similarity=0.790 Sum_probs=4.3
Q ss_pred EEEEEeC
Q 010571 205 YLIVFGG 211 (507)
Q Consensus 205 ~l~i~GG 211 (507)
.|||||=
T Consensus 128 mLFVFGf 134 (1293)
T KOG0996|consen 128 MLFVFGF 134 (1293)
T ss_pred HHHHhhh
Confidence 4667764
No 204
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.00 E-value=1.5 Score=48.19 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=23.2
Q ss_pred HhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010571 437 QGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 437 ~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~ 479 (507)
+.+.+..+.++..++.++.++++++.+....+.+..+|+++.+
T Consensus 344 ~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~ 386 (754)
T TIGR01005 344 LMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAA 386 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHH
Confidence 3344444555555666666666665555555555555555444
No 205
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.83 E-value=2.6 Score=38.92 Aligned_cols=55 Identities=20% Similarity=0.387 Sum_probs=25.8
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+...++.+|+.+..++++...++.+.+.++.+.+..+.+++.+|.++++.+.+.+
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444443
No 206
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.78 E-value=24 Score=35.66 Aligned_cols=183 Identities=11% Similarity=0.090 Sum_probs=97.2
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010571 118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 196 (507)
Q Consensus 118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~ 196 (507)
++|++|+.++.=+.+. ..+ .........-++ +|++.-..++ ..+++.+|+.++.++.+.. .+. ...
T Consensus 214 ~Iyv~dl~tg~~~~lt---~~~-g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~---~~~--~d~ 280 (419)
T PRK04043 214 TLYKYNLYTGKKEKIA---SSQ-GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITN---YPG--IDV 280 (419)
T ss_pred EEEEEECCCCcEEEEe---cCC-CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEccc---CCC--ccC
Confidence 6999999888766664 211 111111122233 5555433322 3579999999999888753 121 122
Q ss_pred eEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCC----CcceE
Q 010571 197 SAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN----GCQET 271 (507)
Q Consensus 197 ~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~----~~~d~ 271 (507)
......+ ..|++.....+ ..+|+++|+.++..+.+...+. .. .....+++.+++-...... ...++
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NN-SSVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred ccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cC-ceECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 2233333 34655543322 2589999999998877643222 11 2233344433333322211 23589
Q ss_pred EEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571 272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 333 (507)
Q Consensus 272 ~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~ 333 (507)
+++|+.+..+..|..... ... ....+++..|+..... .....++.+++..+
T Consensus 352 ~v~d~~~g~~~~LT~~~~-------~~~--p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~ 402 (419)
T PRK04043 352 YLISTNSDYIRRLTANGV-------NQF--PRFSSDGGSIMFIKYL--GNQSALGIIRLNYN 402 (419)
T ss_pred EEEECCCCCeEECCCCCC-------cCC--eEECCCCCEEEEEEcc--CCcEEEEEEecCCC
Confidence 999999998888755311 111 2233344444444332 22456888887654
No 207
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.75 E-value=2.1 Score=46.13 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHH
Q 010571 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK 459 (507)
Q Consensus 417 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~ 459 (507)
.++++++.++.+.+.+++...++....+.++.+++..+.++++
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333444444444444444444444444443
No 208
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.58 E-value=3.2 Score=44.75 Aligned_cols=8 Identities=25% Similarity=0.879 Sum_probs=3.2
Q ss_pred EEEEcccC
Q 010571 103 LLILGGHY 110 (507)
Q Consensus 103 iyv~GG~~ 110 (507)
+.+++|.+
T Consensus 30 ~~~i~G~N 37 (650)
T TIGR03185 30 IILIGGLN 37 (650)
T ss_pred EEEEECCC
Confidence 33344433
No 209
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.56 E-value=8.2 Score=34.24 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=21.5
Q ss_pred hhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571 413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 413 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
.+|.+.|..+..++..+...+...+........++.+.+.++...+.+++
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELK 106 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555444444444444444444334444444444433333333
No 210
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.45 E-value=7.1 Score=37.30 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=14.6
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010571 461 LESSQTIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 461 ~~~~~~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
+.+++++.++.++++...+++.+|.+|
T Consensus 132 V~qLEk~~~q~~qLe~d~qs~lDEkeE 158 (319)
T PF09789_consen 132 VEQLEKLREQIEQLERDLQSLLDEKEE 158 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555566666666655555544
No 211
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.40 E-value=22 Score=34.53 Aligned_cols=189 Identities=14% Similarity=0.080 Sum_probs=84.0
Q ss_pred CCCCeEeeCCC-CCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECC-CCceeEeeeccccccC
Q 010571 2 DSGSWHLELPY-DLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLRLETELDAD 77 (507)
Q Consensus 2 ~~~~~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~-t~~W~~~~~~~~~~~~ 77 (507)
+.+...||+.+ ..++.+.. .+.....+.++.. +..||+.+. . ...+..|+.. ++.+..+.....
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~---~~~~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~~~---- 78 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQV---VDVPGQVQPMVISPDKRHLYVGVR-P----EFRVLSYRIADDGALTFAAESPL---- 78 (330)
T ss_pred CCCEEEEEECCCCceeeeeE---EecCCCCccEEECCCCCEEEEEEC-C----CCcEEEEEECCCCceEEeeeecC----
Confidence 34566777753 56665542 2222222333332 456777543 1 2567777775 456655443211
Q ss_pred ccccCCccCCCCCccceeeEEECC-EEEEEcccCCCCCCcceEEEEECCCC-cE-EEeecCCCCCCCcccceEEEE-CC-
Q 010571 78 KTEDSGLLEVLPPMSDHCMVKWGT-KLLILGGHYKKSSDSMIVRFIDLETN-LC-GVMETSGKVPVARGGHSVTLV-GS- 152 (507)
Q Consensus 78 ~~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~-~W-~~~~~~g~~p~~r~~~~~~~~-~~- 152 (507)
.....|.+..-++ .||+.. .. .+.+.+|++.+. .. .... ..+.....|.++.. ++
T Consensus 79 -----------~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 79 -----------PGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNR 138 (330)
T ss_pred -----------CCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCCCcccEeEeCCCCC
Confidence 0111233333344 455543 22 234777777532 11 1121 11221222333333 33
Q ss_pred EEEEEcCcCCCCCccCcEEEEEcCCCc-EEEee-cCCCCCCCCCCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECC--
Q 010571 153 RLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVE-VTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQ-- 227 (507)
Q Consensus 153 ~l~~~GG~~~~~~~~~~~~~~d~~t~~-W~~~~-~~g~~p~~r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~-- 227 (507)
.+|+..- ..+.+.+||+.+.. ..... ..-..+.+..-+.++...+ .++|+.... .+.+.+|++.
T Consensus 139 ~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~ 207 (330)
T PRK11028 139 TLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDP 207 (330)
T ss_pred EEEEeeC------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeCC
Confidence 5665432 14579999987632 21100 0001111111223344444 467775432 3677777775
Q ss_pred CCcEEe
Q 010571 228 TNEWSQ 233 (507)
Q Consensus 228 ~~~W~~ 233 (507)
++..+.
T Consensus 208 ~~~~~~ 213 (330)
T PRK11028 208 HGEIEC 213 (330)
T ss_pred CCCEEE
Confidence 445544
No 212
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.39 E-value=8 Score=30.12 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=8.6
Q ss_pred hhhhHHHHHHhhccchhhHHh
Q 010571 412 NSRFREKIDEVNSTHSELSKE 432 (507)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~e 432 (507)
...|+..|+..+....++.++
T Consensus 18 La~Le~slE~~K~S~~eL~kq 38 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGELAKQ 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHh
Confidence 333444444444444444333
No 213
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.28 E-value=3.6 Score=48.18 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=4.3
Q ss_pred HHHhhcccccc
Q 010571 356 AYALAKSEKLD 366 (507)
Q Consensus 356 ~~~~~~~~~~~ 366 (507)
.|.+..+..+.
T Consensus 258 lFk~lI~~~~~ 268 (1486)
T PRK04863 258 LFKHLITESTN 268 (1486)
T ss_pred HHHHHhhhhhh
Confidence 34444443333
No 214
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.26 E-value=5.3 Score=42.23 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=30.2
Q ss_pred hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~ 440 (507)
.|.+.++.+...|+....+...+...|+.+........+++++.|.+++.++
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~ 66 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM 66 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666666665555555555665555555555555555555554443
No 215
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.24 E-value=6.2 Score=37.79 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=12.2
Q ss_pred hhhhHHHHHHhhccchhhHHhHHHHHhhHhh
Q 010571 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVA 442 (507)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~ 442 (507)
...++..++...+++++.++++.+.+..++.
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333333333333
No 216
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.24 E-value=3.7 Score=29.84 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=7.6
Q ss_pred HHHHhhccchhhHHhHHHHHh
Q 010571 418 KIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 418 ~~~~~~~~~~~~~~e~~~~~~ 438 (507)
+|+..-..+.-+..|+.+.++
T Consensus 12 KIqqAvdtI~LLqmEieELKe 32 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 217
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.20 E-value=6.2 Score=35.89 Aligned_cols=47 Identities=4% Similarity=0.183 Sum_probs=31.5
Q ss_pred cchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHh
Q 010571 386 DVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 432 (507)
Q Consensus 386 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e 432 (507)
.+.+++..+.......+..+.........+++++.......++++..
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666667777777777777777766544
No 218
>PRK10698 phage shock protein PspA; Provisional
Probab=89.00 E-value=6.4 Score=35.83 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=34.9
Q ss_pred ccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHh
Q 010571 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 432 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e 432 (507)
..+..+++.++.....++..+.........+++++...+...++|++.
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777777777778888888888777777554
No 219
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.99 E-value=8.9 Score=36.25 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=16.0
Q ss_pred hhhhhHHHHHHHHHHHHHhHH-----HHHHHHHHHHHhHH
Q 010571 445 SRCFKLEAQIAELQKMLESSQ-----TIENEVQILRQQKS 479 (507)
Q Consensus 445 ~~~~~~e~~~~e~~~~~~~~~-----~~e~e~~~~~~~~~ 479 (507)
+++.+++.+..+++..+.+.+ +|.+.+..+..++.
T Consensus 113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~ 152 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS 152 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445554444433 44445554444333
No 220
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.89 E-value=11 Score=33.40 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 010571 467 IENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 467 ~e~e~~~~~~~~~~~~~~~ 485 (507)
++.+...++.+++.+.+.+
T Consensus 169 ~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 169 AQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 221
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.87 E-value=4.5 Score=43.19 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=38.6
Q ss_pred cchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhh
Q 010571 386 DVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444 (507)
Q Consensus 386 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 444 (507)
.+...+..++.+.+..+..+.....+.++|....+.+....+..+.+...++.++...+
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777777777777777766655555555544443
No 222
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.75 E-value=28 Score=34.86 Aligned_cols=179 Identities=16% Similarity=0.146 Sum_probs=87.6
Q ss_pred ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCC
Q 010571 36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD 115 (507)
Q Consensus 36 ~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 115 (507)
.++.++++|+-+ .-+..+|..+..- .....+.. --...-++...+++|++.||++..
T Consensus 121 ~d~t~l~s~sDd-----~v~k~~d~s~a~v-~~~l~~ht--------------DYVR~g~~~~~~~hivvtGsYDg~--- 177 (487)
T KOG0310|consen 121 QDNTMLVSGSDD-----KVVKYWDLSTAYV-QAELSGHT--------------DYVRCGDISPANDHIVVTGSYDGK--- 177 (487)
T ss_pred cCCeEEEecCCC-----ceEEEEEcCCcEE-EEEecCCc--------------ceeEeeccccCCCeEEEecCCCce---
Confidence 478888888833 2345566666552 22222211 112222334457899999998754
Q ss_pred cceEEEEECCCC-cEEEeecCCCCCCCcccceEEEE-CCE-EEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571 116 SMIVRFIDLETN-LCGVMETSGKVPVARGGHSVTLV-GSR-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 192 (507)
Q Consensus 116 ~~~~~~~d~~t~-~W~~~~~~g~~p~~r~~~~~~~~-~~~-l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~ 192 (507)
+-.||+.+. .|..--.- ..|.. ..+++ ++. |...|| |.+-++|+.++.=.... ..+ ..
T Consensus 178 ---vrl~DtR~~~~~v~elnh-g~pVe----~vl~lpsgs~iasAgG--------n~vkVWDl~~G~qll~~-~~~--H~ 238 (487)
T KOG0310|consen 178 ---VRLWDTRSLTSRVVELNH-GCPVE----SVLALPSGSLIASAGG--------NSVKVWDLTTGGQLLTS-MFN--HN 238 (487)
T ss_pred ---EEEEEeccCCceeEEecC-CCcee----eEEEcCCCCEEEEcCC--------CeEEEEEecCCceehhh-hhc--cc
Confidence 677888776 33322111 11211 12223 223 334444 35777777644321110 000 11
Q ss_pred CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC
Q 010571 193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN 265 (507)
Q Consensus 193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 265 (507)
..--++....++.-++.||.+. .+-+||. ..|+.+.. -..|.|.-. .++.-++.-+++|..++.
T Consensus 239 KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd~--t~~Kvv~s-~~~~~pvLs-iavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 239 KTVTCLRLASDSTRLLSGSLDR-----HVKVFDT--TNYKVVHS-WKYPGPVLS-IAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred ceEEEEEeecCCceEeeccccc-----ceEEEEc--cceEEEEe-eecccceee-EEecCCCceEEEecccce
Confidence 1111233344555677888764 4678873 44555432 223444332 122236778888886654
No 223
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=88.74 E-value=3.1 Score=43.58 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=5.4
Q ss_pred ECCEEEEEccc
Q 010571 99 WGTKLLILGGH 109 (507)
Q Consensus 99 ~~~~iyv~GG~ 109 (507)
++++--|+||+
T Consensus 214 f~dk~~VvGGy 224 (1259)
T KOG0163|consen 214 FDDKGQVVGGY 224 (1259)
T ss_pred EcCCCceechh
Confidence 34444455554
No 224
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=88.73 E-value=3.2 Score=36.39 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=34.3
Q ss_pred hHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010571 432 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 432 e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~ 486 (507)
.+.+.-..|+.++.++.++.+...-+++++.+.. .|..+++.+..+...+.++++
T Consensus 61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666777777777766666666666655 455566666665555555544
No 225
>PLN00181 protein SPA1-RELATED; Provisional
Probab=88.69 E-value=44 Score=37.11 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=33.4
Q ss_pred CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcC
Q 010571 100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE 176 (507)
Q Consensus 100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~ 176 (507)
++.+++.||.+. .+.+||..++.-...- .. .....++.+ ++.+++.|+.+ +.+.+||+.
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~---~~---~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTI---KT---KANICCVQFPSESGRSLAFGSAD------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEE---ec---CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence 456777776532 3778888765432111 11 111122222 35677777653 368999987
Q ss_pred CC
Q 010571 177 TM 178 (507)
Q Consensus 177 t~ 178 (507)
+.
T Consensus 649 ~~ 650 (793)
T PLN00181 649 NP 650 (793)
T ss_pred CC
Confidence 54
No 226
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.63 E-value=6.8 Score=42.03 Aligned_cols=9 Identities=11% Similarity=0.412 Sum_probs=4.1
Q ss_pred cEEEeecCC
Q 010571 179 TWDAVEVTQ 187 (507)
Q Consensus 179 ~W~~~~~~g 187 (507)
.|....+.|
T Consensus 176 r~~s~t~qg 184 (980)
T KOG0980|consen 176 RWVSLTPQG 184 (980)
T ss_pred cccccCCCc
Confidence 455444433
No 227
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.52 E-value=6.7 Score=38.34 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=15.4
Q ss_pred hhhhhhHHHHHHhhccchhhHHhHHHHH
Q 010571 410 TENSRFREKIDEVNSTHSELSKELSSVQ 437 (507)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~ 437 (507)
.++++++..+|.+++++++++......+
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlk 324 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLK 324 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666554443333
No 228
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=88.51 E-value=10 Score=33.55 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=9.1
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 010571 469 NEVQILRQQKSAFEQEME 486 (507)
Q Consensus 469 ~e~~~~~~~~~~~~~~~~ 486 (507)
.|+..+.++.+++..+++
T Consensus 170 ~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 170 EEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555555555543
No 229
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.48 E-value=3.4 Score=28.77 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=4.2
Q ss_pred HhHHHHHHHHH
Q 010571 476 QQKSAFEQEME 486 (507)
Q Consensus 476 ~~~~~~~~~~~ 486 (507)
+++..++++++
T Consensus 46 ~ei~~L~~e~e 56 (61)
T PF08826_consen 46 QEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 230
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.39 E-value=4.4 Score=28.23 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=13.0
Q ss_pred HhHHHHHhhHhhhhhhhhhHHHHHHHHHHH
Q 010571 431 KELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 431 ~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
.||..++..+...+.++++.+.+..++.++
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~e 47 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQE 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333
No 231
>PRK11546 zraP zinc resistance protein; Provisional
Probab=88.35 E-value=3 Score=34.62 Aligned_cols=7 Identities=57% Similarity=0.738 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 010571 470 EVQILRQ 476 (507)
Q Consensus 470 e~~~~~~ 476 (507)
|++.|+.
T Consensus 97 EI~~Lr~ 103 (143)
T PRK11546 97 EMENLRQ 103 (143)
T ss_pred HHHHHHH
Confidence 3333333
No 232
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=88.35 E-value=35 Score=35.63 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=65.1
Q ss_pred EcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEE--EEE-CCEEEEEeccCCCCCcceEEEEEcC
Q 010571 201 HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAG--ITI-DENWYIVGGGDNNNGCQETIVLNMT 277 (507)
Q Consensus 201 ~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~--~~~-~~~l~v~GG~~~~~~~~d~~~~d~~ 277 (507)
.+++.++.+|-... -.++.+.+.. .-+... ...+|..+...+. ..+ ++.++++- ....+++.++..
T Consensus 391 SPdg~~Ia~st~~~----~~iy~L~~~~-~vk~~~-v~~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~el~ 459 (691)
T KOG2048|consen 391 SPDGNLIAISTVSR----TKIYRLQPDP-NVKVIN-VDDVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFELE 459 (691)
T ss_pred CCCCCEEEEeeccc----eEEEEeccCc-ceeEEE-eccchhhhccceeeEEEecCceEEEEe-----cccceeEEEEec
Confidence 34444666554321 2345554444 222221 2456666544333 334 45555553 223467888888
Q ss_pred cCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCCCCC
Q 010571 278 KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRP 338 (507)
Q Consensus 278 ~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~~~ 338 (507)
+.+.+++...... +....-...++.+.+++|.+.++ ...+++|++++..-...
T Consensus 460 ~ps~kel~~~~~~---~~~~~I~~l~~SsdG~yiaa~~t-----~g~I~v~nl~~~~~~~l 512 (691)
T KOG2048|consen 460 TPSFKELKSIQSQ---AKCPSISRLVVSSDGNYIAAIST-----RGQIFVYNLETLESHLL 512 (691)
T ss_pred Ccchhhhhccccc---cCCCcceeEEEcCCCCEEEEEec-----cceEEEEEcccceeecc
Confidence 8888877555322 22233333445566789999886 45799999977654443
No 233
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.16 E-value=13 Score=32.51 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 010571 467 IENEVQILRQ 476 (507)
Q Consensus 467 ~e~e~~~~~~ 476 (507)
|..+++.++.
T Consensus 100 L~~~i~~Lqe 109 (193)
T PF14662_consen 100 LVAEIETLQE 109 (193)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 234
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=88.16 E-value=11 Score=34.31 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=26.2
Q ss_pred ccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHH
Q 010571 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK 431 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 431 (507)
..+..++..++.........+.........++.++.......++++.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555556666666666655555543
No 235
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.09 E-value=8 Score=37.71 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=11.6
Q ss_pred hhhhhhHHHHHHhhccchhhHHhHHH
Q 010571 410 TENSRFREKIDEVNSTHSELSKELSS 435 (507)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~e~~~ 435 (507)
.+..-++.+++..+.++.++++|..+
T Consensus 41 a~~~ai~a~~~~~E~~l~~Lq~e~~~ 66 (459)
T KOG0288|consen 41 AESRAIKAKLQEKELELNRLQEENTQ 66 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 236
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.07 E-value=2.9 Score=44.18 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=7.5
Q ss_pred hhhhhHHHHHHhhccchhh
Q 010571 411 ENSRFREKIDEVNSTHSEL 429 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~ 429 (507)
++......++.+++.+.++
T Consensus 44 Ek~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 44 EKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333
No 237
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=88.03 E-value=16 Score=31.21 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=4.1
Q ss_pred HHHHHHHHhh
Q 010571 480 AFEQEMERAT 489 (507)
Q Consensus 480 ~~~~~~~~~~ 489 (507)
.+...+++++
T Consensus 144 ~v~~~~e~~~ 153 (159)
T PF05384_consen 144 QVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 238
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=87.95 E-value=5.2 Score=38.83 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHH
Q 010571 446 RCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKS 479 (507)
Q Consensus 446 ~~~~~e~~~~e~~~~~~~~~-~~e~e~~~~~~~~~ 479 (507)
.+++++.++..++..+...| +.+.++.|++++..
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~ 288 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV 288 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555 22333444444433
No 239
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=87.95 E-value=13 Score=32.63 Aligned_cols=50 Identities=10% Similarity=0.087 Sum_probs=29.8
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~ 440 (507)
...+++++..+...+........+..+...++++.+.+.++|-+++..+-
T Consensus 57 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 57 GAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555566666666666666666655555544433
No 240
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.95 E-value=30 Score=34.31 Aligned_cols=139 Identities=13% Similarity=0.091 Sum_probs=70.6
Q ss_pred CCeEeeCCCCC--eEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCC--ceeEeeeccccccCcc
Q 010571 4 GSWHLELPYDL--WVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADKT 79 (507)
Q Consensus 4 ~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~~~~~~ 79 (507)
..+++|+.+.. |...... -....+......++.||+-.. ++ .+++||..++ .|..--..
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~-------- 141 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGG-------- 141 (370)
T ss_pred cEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCcEEEEEecCC--------
Confidence 47899999877 9765531 011111111222566554433 22 6899999765 46553321
Q ss_pred ccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCC--cEEEeecCCCCCCCcccceEEEECCEEEEE
Q 010571 80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIF 157 (507)
Q Consensus 80 ~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~ 157 (507)
. ++..-.++..++.+|+.- ....++.+|..++ .|..-...+ . ..+...+.+...+.+| +
T Consensus 142 --------~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~~~~~~vy-~ 202 (370)
T COG1520 142 --------S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-L-SLSIYGSPAIASGTVY-V 202 (370)
T ss_pred --------C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-c-ccccccCceeecceEE-E
Confidence 1 233333444455666543 1345888888865 577654221 1 2222222223344444 4
Q ss_pred cCcCCCCCccCcEEEEEcCCC--cEEE
Q 010571 158 GGEDRSRKLLNDVHFLDLETM--TWDA 182 (507)
Q Consensus 158 GG~~~~~~~~~~~~~~d~~t~--~W~~ 182 (507)
|..+ ....++.+|+.++ .|..
T Consensus 203 ~~~~----~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 203 GSDG----YDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred ecCC----CcceEEEEEccCCcEeeee
Confidence 4332 1225899999665 5774
No 241
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=87.92 E-value=5.7 Score=42.56 Aligned_cols=7 Identities=0% Similarity=0.216 Sum_probs=2.8
Q ss_pred eccCCCC
Q 010571 284 LTSVKGR 290 (507)
Q Consensus 284 ~~~~~~~ 290 (507)
||.+|..
T Consensus 254 IP~LP~~ 260 (980)
T KOG0980|consen 254 IPTLPED 260 (980)
T ss_pred CCCCCCC
Confidence 3444433
No 242
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=87.89 E-value=13 Score=33.39 Aligned_cols=48 Identities=6% Similarity=0.058 Sum_probs=27.6
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
...|.+++..+...+........+....+.+.++.+.+.+++.+++..
T Consensus 79 ~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~ 126 (204)
T PRK09174 79 GGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQ 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655555555555566666666665555544433
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=87.86 E-value=33 Score=34.78 Aligned_cols=148 Identities=10% Similarity=-0.007 Sum_probs=74.3
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~ 195 (507)
..++++|+.++.=..+. ..+.. .......-++ +|++....++ ..++|.+|+.+.....+... . ...
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g~-~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~~- 286 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKGS-NSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS---S-GID- 286 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCCC-ccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC---C-CCC-
Confidence 45999999988655553 22211 1111112233 5554433322 35799999887776655321 1 111
Q ss_pred ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEE
Q 010571 196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 275 (507)
Q Consensus 196 ~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d 275 (507)
.......++..++|..... -...+|.+++.++..+.+...+ .........-+++.+++....+. ...++++|
T Consensus 287 ~~~~wSpDG~~l~f~s~~~--g~~~Iy~~~~~~g~~~~lt~~g----~~~~~~~~SpDG~~Ia~~s~~~g--~~~I~v~d 358 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRG--GAPQIYRMPASGGAAQRVTFTG----SYNTSPRISPDGKLLAYISRVGG--AFKLYVQD 358 (427)
T ss_pred cCeEEcCCCCEEEEEecCC--CCcEEEEEECCCCceEEEecCC----CCcCceEECCCCCEEEEEEccCC--cEEEEEEE
Confidence 1223334444344432211 1257899998887777664221 11111222224544444332221 23689999
Q ss_pred cCcCeeEEec
Q 010571 276 MTKLAWSILT 285 (507)
Q Consensus 276 ~~~~~W~~~~ 285 (507)
+.+.....+.
T Consensus 359 ~~~g~~~~lt 368 (427)
T PRK02889 359 LATGQVTALT 368 (427)
T ss_pred CCCCCeEEcc
Confidence 9888777664
No 244
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.77 E-value=8.2 Score=35.56 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhh--hhhhhhhHHHHHHHHHH----HHHhHHH
Q 010571 393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA--ERSRCFKLEAQIAELQK----MLESSQT 466 (507)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~e~~~~e~~~----~~~~~~~ 466 (507)
-|+.+.++.+..+..-..+..+|+.+|..+++.+ .++|=..++.|+.. .++++++|++-+.-.+. +.+.+|+
T Consensus 72 HLkakLkes~~~l~dRetEI~eLksQL~RMrEDW--IEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 72 HLKAKLKESENRLHDRETEIDELKSQLARMREDW--IEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Confidence 3455555555566666667777777777777665 34444444444432 23444455544443332 2334445
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 010571 467 IENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 467 ~e~e~~~~~~~~~~~~~~~~ 486 (507)
....+....++++.|.+-.|
T Consensus 150 YFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 150 YFVDINIQNKKLESLLQSME 169 (305)
T ss_pred HHhhhhhhHhHHHHHHHHHH
Confidence 55567777777777776544
No 245
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.69 E-value=8.5 Score=35.06 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=37.0
Q ss_pred ccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHH
Q 010571 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS 434 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~ 434 (507)
..+..++..++......+..+.........++.++...+....++++..+
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~ 75 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE 75 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777888888888888888887765543
No 246
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=87.58 E-value=24 Score=32.81 Aligned_cols=165 Identities=16% Similarity=0.077 Sum_probs=90.5
Q ss_pred CCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCcee---EeeeccccccCccccCCccCCCCCcccee---eE
Q 010571 24 RPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWS---NLRLETELDADKTEDSGLLEVLPPMSDHC---MV 97 (507)
Q Consensus 24 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~---~~~~~~~~~~~~~~~~~~~~~p~~r~~~~---~~ 97 (507)
+|.+-.|.+.++.++.||.--. .++.+..||+.+.+-. .+|..... ...|....+++ .+
T Consensus 65 Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~----------n~~~y~~~~~t~iD~A 129 (250)
T PF02191_consen 65 LPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYN----------NRFPYYWSGYTDIDFA 129 (250)
T ss_pred EeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccc----------cccceecCCCceEEEE
Confidence 4444556666777777776533 4678999999998755 33332210 01111222222 33
Q ss_pred EECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571 98 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET 177 (507)
Q Consensus 98 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t 177 (507)
+-++-|+++-....... .-.+-..|+.+..=..--.+ ..+.+..+ .+..+.|.||+....+... ..-.++||+.+
T Consensus 130 vDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~T-~~~k~~~~-naFmvCGvLY~~~s~~~~~--~~I~yafDt~t 204 (250)
T PF02191_consen 130 VDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWNT-SYPKRSAG-NAFMVCGVLYATDSYDTRD--TEIFYAFDTYT 204 (250)
T ss_pred EcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEEe-ccCchhhc-ceeeEeeEEEEEEECCCCC--cEEEEEEECCC
Confidence 33455655544333221 23466778776543322211 23333333 3555677888887665432 34578899998
Q ss_pred CcEEEeecCCCCCCCCCCceEEEEc--CcEEEEEe
Q 010571 178 MTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFG 210 (507)
Q Consensus 178 ~~W~~~~~~g~~p~~r~~~~~~~~~--~~~l~i~G 210 (507)
++=..+.. +.+.+-..++++.++ ++.||++-
T Consensus 205 ~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 205 GKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred Cceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence 87766654 445455555666653 46788874
No 247
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.55 E-value=16 Score=31.98 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=8.7
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 010571 470 EVQILRQQKSAFEQEMER 487 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~~ 487 (507)
+.+++++.+..++...+.
T Consensus 153 ~~~~l~~~i~~l~rk~~~ 170 (177)
T PF13870_consen 153 EVEELRKEIKELERKVEI 170 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555554443
No 248
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=87.54 E-value=10 Score=34.10 Aligned_cols=51 Identities=8% Similarity=0.177 Sum_probs=31.3
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLV 441 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~ 441 (507)
...+.+++..+...+.......++.++.+.+.++.+++.+.+.+++..+-+
T Consensus 74 ~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~ 124 (205)
T PRK06231 74 QRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQAN 124 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666555544443
No 249
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=87.42 E-value=6.1 Score=38.79 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=5.4
Q ss_pred hHHHHhhccccc
Q 010571 354 TAAYALAKSEKL 365 (507)
Q Consensus 354 ~~~~~~~~~~~~ 365 (507)
+..+.++.+...
T Consensus 120 ~~~f~i~~~qt~ 131 (447)
T KOG2751|consen 120 TRLFDILSSQTQ 131 (447)
T ss_pred HHHHHHhhccCC
Confidence 344544444443
No 250
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=87.31 E-value=18 Score=31.80 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHH----HHHHHHHhHHHHH
Q 010571 393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA----ELQKMLESSQTIE 468 (507)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~----e~~~~~~~~~~~e 468 (507)
+|+.+.++-+....++......-+..++.......+.+.+++.++.-++..+..+...+.... ++.++-+-+....
T Consensus 71 qLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk 150 (188)
T PF05335_consen 71 QLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAK 150 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333334444444444444444444444444444444444443333 3333333333445
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 010571 469 NEVQILRQQKSAFEQEME 486 (507)
Q Consensus 469 ~e~~~~~~~~~~~~~~~~ 486 (507)
+..+.|++++.....+++
T Consensus 151 ~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 151 RRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666665555554
No 251
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.27 E-value=5.3 Score=39.32 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=7.6
Q ss_pred hhhhhHHHHHHhhccchhh
Q 010571 411 ENSRFREKIDEVNSTHSEL 429 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~ 429 (507)
..++|..++........++
T Consensus 294 yLaKL~~~l~~~~~~~~~l 312 (521)
T KOG1937|consen 294 YLAKLMGKLAELNKQMEEL 312 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333
No 252
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=87.17 E-value=14 Score=29.76 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=28.1
Q ss_pred hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
..+..++.-+....+.+.+.+.--.-|+++++.+..+.-.+++-+...++
T Consensus 13 nrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe 62 (134)
T PF15233_consen 13 NRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQE 62 (134)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44555555555555566666666666777777776655544433333333
No 253
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=87.10 E-value=5 Score=37.93 Aligned_cols=6 Identities=33% Similarity=-0.075 Sum_probs=2.2
Q ss_pred hhhHHH
Q 010571 447 CFKLEA 452 (507)
Q Consensus 447 ~~~~e~ 452 (507)
..+.++
T Consensus 222 ~~k~ee 227 (561)
T KOG1103|consen 222 TKKGEE 227 (561)
T ss_pred cCCChH
Confidence 333333
No 254
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.06 E-value=7.9 Score=41.17 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=20.8
Q ss_pred hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhH
Q 010571 410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 450 (507)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 450 (507)
.+.+.+++...+++.++++++.+++....+.+++++....+
T Consensus 671 ~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~L 711 (970)
T KOG0946|consen 671 YQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLL 711 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544444444433333
No 255
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=87.06 E-value=3 Score=36.88 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 010571 451 EAQIAELQKMLE 462 (507)
Q Consensus 451 e~~~~e~~~~~~ 462 (507)
+.++.+++++++
T Consensus 116 ~~~~~~l~~el~ 127 (188)
T PF03962_consen 116 KKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 256
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=86.99 E-value=14 Score=29.67 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=5.3
Q ss_pred HHHHHhHHHHHHHH
Q 010571 472 QILRQQKSAFEQEM 485 (507)
Q Consensus 472 ~~~~~~~~~~~~~~ 485 (507)
+.++++++.+..++
T Consensus 94 ~~l~e~l~eLq~~i 107 (119)
T COG1382 94 EKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 257
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=86.94 E-value=3.8 Score=40.20 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=12.1
Q ss_pred hhhhhhHHHHHHhhccchhhHHhHHHH
Q 010571 410 TENSRFREKIDEVNSTHSELSKELSSV 436 (507)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~ 436 (507)
.+...|+.+|...+.++++..++.++.
T Consensus 15 ~~V~~m~~~L~~~~~~L~~k~~e~e~l 41 (344)
T PF12777_consen 15 EQVEEMQEELEEKQPELEEKQKEAEEL 41 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 258
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=86.92 E-value=9.7 Score=31.80 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 010571 466 TIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~~~~ 488 (507)
++++++..++++++++.+.++++
T Consensus 112 ~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 112 KLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555443
No 259
>PF14282 FlxA: FlxA-like protein
Probab=86.84 E-value=2.6 Score=33.29 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHHHHhH
Q 010571 447 CFKLEAQIAELQKMLESS 464 (507)
Q Consensus 447 ~~~~e~~~~e~~~~~~~~ 464 (507)
...++.+|+.++.++.++
T Consensus 53 ~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 260
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=86.83 E-value=5.2 Score=38.86 Aligned_cols=11 Identities=27% Similarity=0.453 Sum_probs=5.0
Q ss_pred hhHHhhHHHHH
Q 010571 389 TDIDAIKEDKR 399 (507)
Q Consensus 389 ~~~~~l~~~~~ 399 (507)
++++++++++.
T Consensus 107 kkiqal~keke 117 (552)
T KOG2129|consen 107 KKIQALFKEKE 117 (552)
T ss_pred HHHHHhhcccc
Confidence 44444444444
No 261
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=86.83 E-value=5.4 Score=38.86 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=30.5
Q ss_pred HHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhh
Q 010571 397 DKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC 447 (507)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 447 (507)
+....+...+....+...++.+-......+++.|-+|+++++++.++.+++
T Consensus 21 ~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 21 ELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555566666666666667777777777777776665444
No 262
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=86.77 E-value=8.7 Score=33.54 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=34.2
Q ss_pred hHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHH
Q 010571 432 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 432 e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~~e~e~~~~~~~~~~~~~ 483 (507)
+.+++++.++.++.++++-.+.+|++++.|+..+ -|....-|.+|++.+.++
T Consensus 68 eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 68 EQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKE 120 (272)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777888888888888888888877 344445555555544433
No 263
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.75 E-value=28 Score=32.78 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=69.7
Q ss_pred CcceEEEEECCCCcEEEeecCCCCCCCcccce---EEE---ECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCC
Q 010571 115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHS---VTL---VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT 188 (507)
Q Consensus 115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~---~~~---~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~ 188 (507)
..+.+..||..+++=+.+-.. ....++.-+. =.. +++.|++.-+-. ...-.+|.+|..++.-..+..
T Consensus 76 KYSHVH~yd~e~~~VrLLWke-sih~~~~WaGEVSdIlYdP~~D~LLlAR~DG---h~nLGvy~ldr~~g~~~~L~~--- 148 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKE-SIHDKTKWAGEVSDILYDPYEDRLLLARADG---HANLGVYSLDRRTGKAEKLSS--- 148 (339)
T ss_pred ccceEEEEEcCCCeEEEEEec-ccCCccccccchhheeeCCCcCEEEEEecCC---cceeeeEEEcccCCceeeccC---
Confidence 467899999988864444321 1111211111 111 256777765432 234469999999998888863
Q ss_pred CCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcE--Eeeeec----CCCCCCCcceEEEEECCEEEEE
Q 010571 189 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW--SQPEIK----GDLVTGRAGHAGITIDENWYIV 259 (507)
Q Consensus 189 ~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W--~~~~~~----~~~p~~r~~~~~~~~~~~l~v~ 259 (507)
.|.++ .+.+.+. .+||=.....-.+.|++||+.++.| ...+.. +.....|..-.++.+.+++|.|
T Consensus 149 ~ps~K----G~~~~D~--a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 149 NPSLK----GTLVHDY--ACFGINNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred CCCcC----ceEeeee--EEEeccccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 23332 1222233 2232222223457899999999999 332211 1111123333556666776655
No 264
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.70 E-value=6 Score=41.66 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccch
Q 010571 393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS 427 (507)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 427 (507)
.|+.....+.........+.+.++..+..+..+.+
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~ 366 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE 366 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 265
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=86.64 E-value=18 Score=30.93 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=20.6
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL 429 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 429 (507)
+..+...+..+-......+.+...++++|++++.+..+.
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~ 46 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEV 46 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555444443
No 266
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.63 E-value=3.7 Score=42.09 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 010571 467 IENEVQILRQQKSAFEQE 484 (507)
Q Consensus 467 ~e~e~~~~~~~~~~~~~~ 484 (507)
.++++.+++++-+++..|
T Consensus 347 kd~~i~~mReec~~l~~E 364 (546)
T KOG0977|consen 347 KDAEIAKMREECQQLSVE 364 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 267
>PRK01742 tolB translocation protein TolB; Provisional
Probab=86.54 E-value=40 Score=34.26 Aligned_cols=162 Identities=11% Similarity=-0.022 Sum_probs=78.0
Q ss_pred CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCE-EEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571 53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTK-LLILGGHYKKSSDSMIVRFIDLETNLCGV 131 (507)
Q Consensus 53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~~t~~W~~ 131 (507)
..++++|+.++.-..+.... .........-+++ |++...... ..++|.+|+.++....
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~-----------------g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~ 286 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFR-----------------GHNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQ 286 (429)
T ss_pred cEEEEEeCCCCceEEEecCC-----------------CccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEe
Confidence 46899999887655554322 1111122222444 444332211 2358999998887766
Q ss_pred eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571 132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 210 (507)
Q Consensus 132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G 210 (507)
+.. .+. ........-++ .|++....++ ...++.++..+..-..+.. . . +......++..+++.
T Consensus 287 lt~---~~~-~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~---~---~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 287 LTS---GAG-NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--R---G---YSAQISADGKTLVMI 350 (429)
T ss_pred ecc---CCC-CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--C---C---CCccCCCCCCEEEEE
Confidence 642 111 11111122244 4554433221 2367777776554333311 1 1 122223343333343
Q ss_pred CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEecc
Q 010571 211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGG 262 (507)
Q Consensus 211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~ 262 (507)
+. +.++.+|+.++.+..+... . ........-+++++++++.
T Consensus 351 ~~------~~i~~~Dl~~g~~~~lt~~--~---~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 351 NG------DNVVKQDLTSGSTEVLSST--F---LDESPSISPNGIMIIYSST 391 (429)
T ss_pred cC------CCEEEEECCCCCeEEecCC--C---CCCCceECCCCCEEEEEEc
Confidence 32 4688899999888765321 1 1111223346677777664
No 268
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.53 E-value=4.9 Score=41.09 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010571 444 RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 444 ~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~ 479 (507)
+.++..++..+.+.++++......+.+...|+++.+
T Consensus 317 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~ 352 (444)
T TIGR03017 317 KQREAELREALENQKAKVLELNRQRDEMSVLQRDVE 352 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555544444444444444444444
No 269
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=86.33 E-value=20 Score=30.60 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=26.5
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
...+.+++..+...+........+......+.++.+.+.+.+.+++.+
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~ 95 (156)
T CHL00118 48 LKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEIT 95 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666555555555555555555555555555444433
No 270
>PRK01742 tolB translocation protein TolB; Provisional
Probab=86.20 E-value=41 Score=34.13 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=69.0
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195 (507)
Q Consensus 117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~ 195 (507)
..++.+|..++.-..+. ..+.. .......-++ .|++....++ ..+++.+|+.+.....+... . ...
T Consensus 228 ~~i~i~dl~tg~~~~l~---~~~g~-~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~--~~~ 294 (429)
T PRK01742 228 SQLVVHDLRSGARKVVA---SFRGH-NGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSG---A--GNN 294 (429)
T ss_pred cEEEEEeCCCCceEEEe---cCCCc-cCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccC---C--CCc
Confidence 45899999888766554 22211 1111122244 4544332222 12588899988877666421 1 112
Q ss_pred ceEEEEcCcEEEEEeC-CCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEE
Q 010571 196 HSAALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 274 (507)
Q Consensus 196 ~~~~~~~~~~l~i~GG-~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~ 274 (507)
.......++..++|.. ..+ ...+|.++.....-..+. . .. ......-+++.+++.+. +.++.+
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~--~----~~-~~~~~SpDG~~ia~~~~------~~i~~~ 358 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVG--G----RG-YSAQISADGKTLVMING------DNVVKQ 358 (429)
T ss_pred CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEec--C----CC-CCccCCCCCCEEEEEcC------CCEEEE
Confidence 2233334444334433 222 246888887665433331 1 11 11112224444444332 257789
Q ss_pred EcCcCeeEEec
Q 010571 275 NMTKLAWSILT 285 (507)
Q Consensus 275 d~~~~~W~~~~ 285 (507)
|+.+..+..+.
T Consensus 359 Dl~~g~~~~lt 369 (429)
T PRK01742 359 DLTSGSTEVLS 369 (429)
T ss_pred ECCCCCeEEec
Confidence 99988887653
No 271
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.19 E-value=28 Score=32.14 Aligned_cols=101 Identities=20% Similarity=0.164 Sum_probs=61.4
Q ss_pred CEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCC
Q 010571 38 QKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD 115 (507)
Q Consensus 38 ~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 115 (507)
.+-|++-|.+. ..+-..|+.++. |+.+-. .|.-.++.++||. .|+|-+..
T Consensus 22 skT~v~igSHs----~~~~avd~~sG~~~We~ilg-------------------~RiE~sa~vvgdf-VV~GCy~g---- 73 (354)
T KOG4649|consen 22 SKTLVVIGSHS----GIVIAVDPQSGNLIWEAILG-------------------VRIECSAIVVGDF-VVLGCYSG---- 73 (354)
T ss_pred CceEEEEecCC----ceEEEecCCCCcEEeehhhC-------------------ceeeeeeEEECCE-EEEEEccC----
Confidence 35566656443 346678998875 766542 6888888889998 44443322
Q ss_pred cceEEEEECCCC--cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc
Q 010571 116 SMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 179 (507)
Q Consensus 116 ~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~ 179 (507)
.+|.++..|+ -|.-.. -.....-+.+..++.++++|-.+. ..|.+|+.+..
T Consensus 74 --~lYfl~~~tGs~~w~f~~-----~~~vk~~a~~d~~~glIycgshd~------~~yalD~~~~~ 126 (354)
T KOG4649|consen 74 --GLYFLCVKTGSQIWNFVI-----LETVKVRAQCDFDGGLIYCGSHDG------NFYALDPKTYG 126 (354)
T ss_pred --cEEEEEecchhheeeeee-----hhhhccceEEcCCCceEEEecCCC------cEEEecccccc
Confidence 2778888877 455442 112222233445566777776543 48888887765
No 272
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.09 E-value=18 Score=29.87 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=10.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhH
Q 010571 441 VAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 441 ~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
..+++...+++..+.+++.+....
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a 85 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333
No 273
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.96 E-value=3.4 Score=36.87 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=25.3
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010571 439 QLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 439 ~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~ 486 (507)
++...+++..+++.++++.+.++...+ .++|+.+.++++-..+.++.+
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~ 203 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYS 203 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 344445555555555555555555554 455555555555555555443
No 274
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.85 E-value=8.3 Score=41.93 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 010571 466 TIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~~~~ 488 (507)
++..+..++..++..++++..++
T Consensus 353 ~l~~ee~~~~~rl~~l~~~~~~l 375 (1200)
T KOG0964|consen 353 SLVDEEKRLKKRLAKLEQKQRDL 375 (1200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666665544
No 275
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=85.72 E-value=5.6 Score=37.04 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 010571 466 TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
..+++++++.+++..||.|+-.
T Consensus 63 dYqrq~~elneEkrtLeRELAR 84 (351)
T PF07058_consen 63 DYQRQVQELNEEKRTLERELAR 84 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778888888888888743
No 276
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=85.71 E-value=15 Score=32.00 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=30.5
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~ 440 (507)
...+.+++..+...+........+..+.+++.+.++++.+++.+++..+-
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A 93 (175)
T PRK14472 44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREG 93 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655666666666666666666666655554443
No 277
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.70 E-value=4.3 Score=35.22 Aligned_cols=54 Identities=28% Similarity=0.366 Sum_probs=21.2
Q ss_pred hhhhHHHHHHhhccchhhHHhHHHHHhhH--hhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 412 NSRFREKIDEVNSTHSELSKELSSVQGQL--VAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
..+|+.++..++.+...++.++..+.... +.+...+.+++.++.+++.+|..++
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333333333322 2223333444444444444444433
No 278
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=85.50 E-value=16 Score=31.86 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=31.4
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~ 440 (507)
...+.+++..+...+........+....+.+.+..+++.+++.+++..+-
T Consensus 45 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a 94 (174)
T PRK07352 45 GKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADA 94 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666676666666666655554444
No 279
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=85.48 E-value=7.5 Score=33.01 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=8.1
Q ss_pred hhhhhHHHHHHhhccchhh
Q 010571 411 ENSRFREKIDEVNSTHSEL 429 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~ 429 (507)
+.+.++.-++...+.++++
T Consensus 106 Elq~mr~~ln~FR~qm~dl 124 (179)
T PF14723_consen 106 ELQQMRRSLNSFREQMMDL 124 (179)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 280
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.44 E-value=11 Score=38.71 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=4.3
Q ss_pred HHHHHHHhHH
Q 010571 470 EVQILRQQKS 479 (507)
Q Consensus 470 e~~~~~~~~~ 479 (507)
+.+.|++++.
T Consensus 205 ~~q~Lleel~ 214 (546)
T KOG0977|consen 205 RVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 281
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=85.41 E-value=22 Score=30.94 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=28.2
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~ 440 (507)
...+.+++..+...+........+....+.+.+..+.+.+++.+++..+-
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a 93 (173)
T PRK13453 44 KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDA 93 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665655555555555556666666666655555544443
No 282
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.39 E-value=9.1 Score=41.64 Aligned_cols=78 Identities=19% Similarity=0.355 Sum_probs=44.1
Q ss_pred hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHH----HHHHHHHHhHHHHHHHH
Q 010571 410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE----NEVQILRQQKSAFEQEM 485 (507)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e----~e~~~~~~~~~~~~~~~ 485 (507)
.+.+.++.++..++.++++...+++++...+...+.+..+......++++++..++... +|-.+++..+..+++.+
T Consensus 411 e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl 490 (1200)
T KOG0964|consen 411 EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDL 490 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666666665555556666666666666666655555322 23344444445555555
Q ss_pred HH
Q 010571 486 ER 487 (507)
Q Consensus 486 ~~ 487 (507)
..
T Consensus 491 ~~ 492 (1200)
T KOG0964|consen 491 SR 492 (1200)
T ss_pred HH
Confidence 43
No 283
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.31 E-value=8.2 Score=28.20 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhh
Q 010571 467 IENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 467 ~e~e~~~~~~~~~~~~~~~~~~~ 489 (507)
+++.+..+..+++.++.+++.++
T Consensus 45 ~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 45 LEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555544433
No 284
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=85.23 E-value=16 Score=32.16 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=25.0
Q ss_pred HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
..+.+++..+...+........+....+.+.+..+.+.+++.+++..
T Consensus 51 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~ 97 (184)
T CHL00019 51 DLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRV 97 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555545555555555555555555555444433
No 285
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.22 E-value=20 Score=32.75 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=5.9
Q ss_pred HHHhhccchhhHHh
Q 010571 419 IDEVNSTHSELSKE 432 (507)
Q Consensus 419 ~~~~~~~~~~~~~e 432 (507)
|++++++.+.+..|
T Consensus 34 L~e~~kE~~~L~~E 47 (230)
T PF10146_consen 34 LEEYRKEMEELLQE 47 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 286
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=85.18 E-value=5.5 Score=43.54 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 010571 447 CFKLEAQIAELQKMLESSQTIENEVQILRQQKSA 480 (507)
Q Consensus 447 ~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~ 480 (507)
...+++++.++++++.+..+.+++..+++++.+.
T Consensus 348 ~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~ 381 (726)
T PRK09841 348 RQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEA 381 (726)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3344444455555555555666666666666553
No 287
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.12 E-value=8.6 Score=33.99 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=25.4
Q ss_pred HHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010571 436 VQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 436 ~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~ 486 (507)
...++.+....+.+++..+.+++++.+... ...+++.+++-..++++++++
T Consensus 122 ~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 122 KEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666666666665543333 333455555555555555544
No 288
>PF14282 FlxA: FlxA-like protein
Probab=85.10 E-value=1.8 Score=34.25 Aligned_cols=6 Identities=17% Similarity=0.457 Sum_probs=2.2
Q ss_pred HHHHHH
Q 010571 470 EVQILR 475 (507)
Q Consensus 470 e~~~~~ 475 (507)
.+.+++
T Consensus 66 QI~qlq 71 (106)
T PF14282_consen 66 QIAQLQ 71 (106)
T ss_pred HHHHHH
Confidence 333333
No 289
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.94 E-value=15 Score=33.39 Aligned_cols=24 Identities=21% Similarity=0.577 Sum_probs=13.6
Q ss_pred EEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571 205 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 233 (507)
Q Consensus 205 ~l~i~GG~~~~~~~~~i~~~d~~~~~W~~ 233 (507)
+-++.||.+.. -.||.| ..+.|..
T Consensus 176 krlvSgGcDn~---VkiW~~--~~~~w~~ 199 (299)
T KOG1332|consen 176 KRLVSGGCDNL---VKIWKF--DSDSWKL 199 (299)
T ss_pred ceeeccCCccc---eeeeec--CCcchhh
Confidence 35778887632 235555 4556654
No 290
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=84.88 E-value=18 Score=31.52 Aligned_cols=50 Identities=6% Similarity=0.121 Sum_probs=27.0
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~ 440 (507)
...+.+++..+...+........+..+.+.+.+..+.+.+++.+++..+-
T Consensus 42 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A 91 (173)
T PRK13460 42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEA 91 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555544433
No 291
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.85 E-value=3.5 Score=42.25 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=20.6
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA 442 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~ 442 (507)
+.-|+..|+.+.-..+-..++.+...++|..++.-+++.+..|...++.+|+
T Consensus 113 LaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQq 164 (861)
T KOG1899|consen 113 LARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQ 164 (861)
T ss_pred HHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHH
Confidence 3334444444422222222233333344444444444444444444444433
No 292
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=84.57 E-value=9.9 Score=29.46 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=7.1
Q ss_pred HHHHHHHhHHHHHHHHH
Q 010571 470 EVQILRQQKSAFEQEME 486 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~ 486 (507)
..+||.++.+.+.++++
T Consensus 55 rN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 55 RNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 293
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.52 E-value=26 Score=32.06 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=22.7
Q ss_pred hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhH
Q 010571 410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 450 (507)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 450 (507)
.-..+++++++.+..+.....++|+++......++..+.+.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa 72 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQA 72 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666555556666666666555554444333
No 294
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=84.43 E-value=12 Score=32.61 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=39.6
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~ 486 (507)
++..+.+.|..-+.....+..++...+.+-++.-.+-...+.+.+.++.+- +..+..+.++++++..|+.+.+
T Consensus 113 Qka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~---~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 113 QKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAER---RAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 555566667666666666666666665555444333333333333222222 2455566667777777776654
No 295
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.34 E-value=13 Score=40.69 Aligned_cols=6 Identities=33% Similarity=0.456 Sum_probs=3.2
Q ss_pred EEcccC
Q 010571 313 AFGGYN 318 (507)
Q Consensus 313 v~GG~~ 318 (507)
+.||..
T Consensus 661 lTGGs~ 666 (1174)
T KOG0933|consen 661 LTGGSR 666 (1174)
T ss_pred ccCCCC
Confidence 456654
No 296
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.33 E-value=8.5 Score=36.68 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=7.3
Q ss_pred HHhhHHHHHHHHHhhH
Q 010571 391 IDAIKEDKRVLELSLT 406 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~ 406 (507)
+..++....++++++.
T Consensus 79 ~r~lk~~l~evEekyr 94 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYR 94 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 297
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.20 E-value=13 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=12.2
Q ss_pred hhHHHHHHhhccchhhHHhHHHHHhhHhh
Q 010571 414 RFREKIDEVNSTHSELSKELSSVQGQLVA 442 (507)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~e~~~~~~~~~~ 442 (507)
+|..+++.+-..+..++.++.+.++++..
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~ 36 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444443333
No 298
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=84.19 E-value=45 Score=32.79 Aligned_cols=120 Identities=14% Similarity=0.048 Sum_probs=64.6
Q ss_pred CEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCC---CC
Q 010571 38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK---SS 114 (507)
Q Consensus 38 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~ 114 (507)
..+||.-...... .+.+.++|..+++-...-..+. .|| +.+..-+..||+.-.+.+. ..
T Consensus 13 ~~v~V~d~~~~~~-~~~v~ViD~~~~~v~g~i~~G~---------------~P~--~~~spDg~~lyva~~~~~R~~~G~ 74 (352)
T TIGR02658 13 RRVYVLDPGHFAA-TTQVYTIDGEAGRVLGMTDGGF---------------LPN--PVVASDGSFFAHASTVYSRIARGK 74 (352)
T ss_pred CEEEEECCccccc-CceEEEEECCCCEEEEEEEccC---------------CCc--eeECCCCCEEEEEeccccccccCC
Confidence 4466665532222 2789999999866544333321 133 2223335678888763221 22
Q ss_pred CcceEEEEECCCCcEEEeecCCCCCCCccc------ceEEEEC-CEEEEEcCcCCCCCccCcEEEEEcCCCcEEE
Q 010571 115 DSMIVRFIDLETNLCGVMETSGKVPVARGG------HSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDA 182 (507)
Q Consensus 115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~------~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~ 182 (507)
..+.+.+||+.|.+-..--+. .+.||.. .....-+ ..+|+.. . ...+.+.++|+.+++-..
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~----~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFYQ-F----SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCEEEEEECccCcEEeEEcc--CCCchhhccCccceEEECCCCCEEEEec-C----CCCCEEEEEECCCCcEEE
Confidence 356799999999876543321 1232311 1112223 3666652 1 124578888888877654
No 299
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.06 E-value=14 Score=39.28 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=25.5
Q ss_pred HHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhh
Q 010571 396 EDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA 442 (507)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~ 442 (507)
...++++..++....++..|+..++.++.++.+.+-+++....++++
T Consensus 106 sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~ 152 (1265)
T KOG0976|consen 106 SQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHK 152 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33344444555555566666666666666666555555554444433
No 300
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.97 E-value=14 Score=40.05 Aligned_cols=14 Identities=7% Similarity=-0.071 Sum_probs=7.5
Q ss_pred CCCCeEeeCCCCCe
Q 010571 2 DSGSWHLELPYDLW 15 (507)
Q Consensus 2 ~~~~~~~d~~~~~W 15 (507)
|++.|++|.....-
T Consensus 41 d~~L~vWd~~e~~l 54 (717)
T PF10168_consen 41 DGDLFVWDSSECCL 54 (717)
T ss_pred CCEEEEEECCCCEE
Confidence 44556666664443
No 301
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=83.80 E-value=23 Score=33.17 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 010571 466 TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
.++..+.|++-+--=|.+++++
T Consensus 218 s~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444344444443
No 302
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=83.80 E-value=60 Score=34.00 Aligned_cols=124 Identities=14% Similarity=0.028 Sum_probs=65.2
Q ss_pred eeeEEECCEEEEEcccCCCCCCcceEEEEECCCC--cEEEeecCC-CC-C---CCcccceEEEECCEEEEEcCcCCCCCc
Q 010571 94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSG-KV-P---VARGGHSVTLVGSRLIIFGGEDRSRKL 166 (507)
Q Consensus 94 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g-~~-p---~~r~~~~~~~~~~~l~~~GG~~~~~~~ 166 (507)
.+-++.++.||+.... ..++.+|..|+ .|+.-.... .. + ........++.++++|+...
T Consensus 63 stPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------- 128 (527)
T ss_pred cCCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------
Confidence 3445668999986542 24889998876 477543110 00 0 00111223455777776321
Q ss_pred cCcEEEEEcCCCc--EEEeecCCCCCCCC-CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc--EEee
Q 010571 167 LNDVHFLDLETMT--WDAVEVTQTPPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP 234 (507)
Q Consensus 167 ~~~~~~~d~~t~~--W~~~~~~g~~p~~r-~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~ 234 (507)
...++++|..|++ |+.-.. ...... ...+.++. ++.+|+............++.||..++. |+.-
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEECCCCCEEeecccc--cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 2369999998875 765431 111111 11122333 5645553222222234578999998875 7763
No 303
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=83.79 E-value=22 Score=30.25 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=32.1
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~ 440 (507)
...+.+++..+...+........+.+..+.+.+..+.+.+.+..++.++.
T Consensus 30 ~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a 79 (156)
T PRK05759 30 MKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQA 79 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666667777777766666655555444
No 304
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=83.78 E-value=6.2 Score=36.34 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=36.5
Q ss_pred hhhhHHHHHHHHHHH--------HHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceee
Q 010571 446 RCFKLEAQIAELQKM--------LESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWR 501 (507)
Q Consensus 446 ~~~~~e~~~~e~~~~--------~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (507)
|..+.|..|++.-++ .|.+--+|..++++++++++||.++++.+..+.+.++|+=+
T Consensus 24 rD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~~~~~~~~~ggFL~ 87 (247)
T PF09849_consen 24 RDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQAQAPQAQSSGGFLS 87 (247)
T ss_pred CCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchh
Confidence 444455555444333 33333567778899999999999987766666677777644
No 305
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=83.73 E-value=24 Score=29.36 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=27.7
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ 439 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~ 439 (507)
...+.+++..+...+........+..+.+.+.+..+.+.+.+..++.++
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~ 79 (140)
T PRK07353 31 GKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAE 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665555555555555666666666655554444443
No 306
>PLN00181 protein SPA1-RELATED; Provisional
Probab=83.68 E-value=78 Score=35.17 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=51.1
Q ss_pred CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571 101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM 178 (507)
Q Consensus 101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~ 178 (507)
+.+++.|+.+ ..+.+||..++.-.... .. ....-.+++.. ++.+++.||.+. .+.+||+.+.
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~~~~---~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLVTEM---KE-HEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQG 608 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEe---cC-CCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCC
Confidence 4455555542 24888888776432221 11 11111223232 456777777542 4888888765
Q ss_pred cEEEeecCCCCCCCCCCceEEEE--cCcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571 179 TWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTN 229 (507)
Q Consensus 179 ~W~~~~~~g~~p~~r~~~~~~~~--~~~~l~i~GG~~~~~~~~~i~~~d~~~~ 229 (507)
.-...-. . ......+.+ .++.++++|+.+ +.|.+||+.+.
T Consensus 609 ~~~~~~~--~----~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~ 650 (793)
T PLN00181 609 VSIGTIK--T----KANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNP 650 (793)
T ss_pred cEEEEEe--c----CCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 4322110 0 111122222 345577777754 46889998654
No 307
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=83.64 E-value=4.1 Score=39.18 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceee
Q 010571 455 AELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWR 501 (507)
Q Consensus 455 ~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (507)
..++++++.+.++..+++++.++...|..-+ .-.+.+|.||
T Consensus 34 ~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL------~~~k~rG~wG 74 (304)
T PF02646_consen 34 GSLKEQLKQLSEANGEIQQLSQEASNLTSAL------KNSKTRGNWG 74 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------hCCCchhhHH
Confidence 3444555555555555566666555555544 2556677776
No 308
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=83.59 E-value=10 Score=36.49 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=6.7
Q ss_pred HHhhHHHHHHHHH
Q 010571 391 IDAIKEDKRVLEL 403 (507)
Q Consensus 391 ~~~l~~~~~~~~~ 403 (507)
..++.++.+++++
T Consensus 262 l~aileeL~eIk~ 274 (455)
T KOG3850|consen 262 LDAILEELREIKE 274 (455)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 309
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.58 E-value=12 Score=39.57 Aligned_cols=8 Identities=0% Similarity=0.414 Sum_probs=2.9
Q ss_pred hhHHHHHH
Q 010571 414 RFREKIDE 421 (507)
Q Consensus 414 ~l~~~~~~ 421 (507)
+|+..++.
T Consensus 398 kL~~~v~~ 405 (594)
T PF05667_consen 398 KLQALVEA 405 (594)
T ss_pred HHHHHHHH
Confidence 33333333
No 310
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.48 E-value=21 Score=36.35 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=17.1
Q ss_pred hhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 410 TENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
.++..|++++++++.+....+.|+.+.++
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtke 71 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKE 71 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666655555555443
No 311
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=83.48 E-value=21 Score=35.39 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHHH
Q 010571 466 TIENEVQILRQQKSAFE 482 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~ 482 (507)
+++.-++..+-++..+|
T Consensus 302 di~E~~Es~qtRisklE 318 (395)
T PF10267_consen 302 DIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566666666677
No 312
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=83.44 E-value=0.35 Score=52.53 Aligned_cols=101 Identities=25% Similarity=0.433 Sum_probs=0.0
Q ss_pred hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhH---HhHHHHHhhHhhhhh---hhhhHHHHHHHHHHHHH
Q 010571 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS---KELSSVQGQLVAERS---RCFKLEAQIAELQKMLE 462 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~e~~~~~~~~~~~~~---~~~~~e~~~~e~~~~~~ 462 (507)
..+..++.+....+......+.+...++..+..++.+++++. ++.+..+++++.++. ++.+++..++..+++|+
T Consensus 246 ~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLe 325 (713)
T PF05622_consen 246 AQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLE 325 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333334444444444444444443 345556666666643 45566777777777777
Q ss_pred hHHHHHHHHHHHHH-------hHHHHHHHHHHhh
Q 010571 463 SSQTIENEVQILRQ-------QKSAFEQEMERAT 489 (507)
Q Consensus 463 ~~~~~e~e~~~~~~-------~~~~~~~~~~~~~ 489 (507)
....+.+++..|+. ++..+|+++...+
T Consensus 326 d~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~ 359 (713)
T PF05622_consen 326 DLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR 359 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 77654444433333 4445555554433
No 313
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=83.41 E-value=23 Score=28.84 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 010571 465 QTIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 465 ~~~e~e~~~~~~~~~~~~~~~~ 486 (507)
..+..++..++.+++.+++.++
T Consensus 84 ~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 84 KKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554443
No 314
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=83.40 E-value=16 Score=27.04 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=32.4
Q ss_pred HHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHH-HHHHHHHHhHHHHHHHHH
Q 010571 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE-NEVQILRQQKSAFEQEME 486 (507)
Q Consensus 417 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e-~e~~~~~~~~~~~~~~~~ 486 (507)
+.++.++.+.+...+++...+.+....+.++...-++++.+++.+-+++... +-.+++..++..|..+++
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444333333332222223333333333333222 234556666667777765
No 315
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=83.35 E-value=30 Score=30.25 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=3.7
Q ss_pred HHHHHhhHhh
Q 010571 433 LSSVQGQLVA 442 (507)
Q Consensus 433 ~~~~~~~~~~ 442 (507)
|..+..+++.
T Consensus 90 L~iiE~dLE~ 99 (205)
T KOG1003|consen 90 LVIIEGELER 99 (205)
T ss_pred HHHHHhHHHH
Confidence 3333333333
No 316
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.25 E-value=53 Score=32.94 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=45.7
Q ss_pred cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC-----cEEeeeecCCCCCCCcceEEE-EE
Q 010571 179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN-----EWSQPEIKGDLVTGRAGHAGI-TI 252 (507)
Q Consensus 179 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~-----~W~~~~~~~~~p~~r~~~~~~-~~ 252 (507)
.|+.+. .|.++...++....++.++++|..+ .++.-+.... .|..+ +.+..+.....+ ..
T Consensus 271 ~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~----~~~~~~~~l~~v~~~ 336 (398)
T PLN00033 271 YWQPHN----RASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEA----DIKSRGFGILDVGYR 336 (398)
T ss_pred ceEEec----CCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeec----ccCCCCcceEEEEEc
Confidence 489886 3444544555555677788877543 2333222233 34443 223233333333 33
Q ss_pred -CCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571 253 -DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286 (507)
Q Consensus 253 -~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~ 286 (507)
++.++++|.. + -++.-...-.+|+.+..
T Consensus 337 ~d~~~~a~G~~-G-----~v~~s~D~G~tW~~~~~ 365 (398)
T PLN00033 337 SKKEAWAAGGS-G-----ILLRSTDGGKSWKRDKG 365 (398)
T ss_pred CCCcEEEEECC-C-----cEEEeCCCCcceeEccc
Confidence 4577777753 2 23444556678998653
No 317
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=83.06 E-value=3.7 Score=42.82 Aligned_cols=19 Identities=11% Similarity=0.352 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 010571 466 TIENEVQILRQQKSAFEQE 484 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~ 484 (507)
+++...++++++..++++.
T Consensus 241 ~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 241 DLQNDKKQLKADLAELKKA 259 (555)
T ss_pred HHHHhHHHHHHHHHHHHhc
Confidence 3444444444444444433
No 318
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=83.01 E-value=65 Score=33.79 Aligned_cols=159 Identities=13% Similarity=0.183 Sum_probs=84.3
Q ss_pred eEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEE
Q 010571 96 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHF 172 (507)
Q Consensus 96 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~ 172 (507)
+..-++.+..+|-.. .-.++.+.+..+ .++.....+|..+...+...+ ++++|+.. ...-+++.
T Consensus 389 aiSPdg~~Ia~st~~-----~~~iy~L~~~~~--vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~ 455 (691)
T KOG2048|consen 389 AISPDGNLIAISTVS-----RTKIYRLQPDPN--VKVINVDDVPLALLDASAISFTIDKNKLFLVS------KNIFSLEE 455 (691)
T ss_pred ccCCCCCEEEEeecc-----ceEEEEeccCcc--eeEEEeccchhhhccceeeEEEecCceEEEEe------cccceeEE
Confidence 333355566665322 112555555442 122222378877755554433 56777765 12446888
Q ss_pred EEcCCCcEEEeecCCCC-CCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEE
Q 010571 173 LDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251 (507)
Q Consensus 173 ~d~~t~~W~~~~~~g~~-p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~ 251 (507)
|+..+.+..++....+- ..+-..+-++.-.+++|.++++. ..|++|++.+..-..+.. .+ +...+++.
T Consensus 456 ~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~~~~~~l~~--rl---n~~vTa~~ 524 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR------GQIFVYNLETLESHLLKV--RL---NIDVTAAA 524 (691)
T ss_pred EEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc------ceEEEEEcccceeecchh--cc---Ccceeeee
Confidence 88888777776532111 11112222233346678887754 469999999987766421 11 12223333
Q ss_pred E----CCEEEEEeccCCCCCcceEEEEEcCc---CeeEEe
Q 010571 252 I----DENWYIVGGGDNNNGCQETIVLNMTK---LAWSIL 284 (507)
Q Consensus 252 ~----~~~l~v~GG~~~~~~~~d~~~~d~~~---~~W~~~ 284 (507)
+ .+.+.|.- .-+.++.||+.. .+|++.
T Consensus 525 ~~~~~~~~lvvat------s~nQv~efdi~~~~l~~ws~~ 558 (691)
T KOG2048|consen 525 FSPFVRNRLVVAT------SNNQVFEFDIEARNLTRWSKN 558 (691)
T ss_pred ccccccCcEEEEe------cCCeEEEEecchhhhhhhhhc
Confidence 2 35566652 224688888843 356654
No 319
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=82.99 E-value=23 Score=33.33 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=16.8
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHH
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKID 420 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 420 (507)
+...+.++++.+..+...++..+....++.....
T Consensus 67 ineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 67 INEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555555555544444444444444
No 320
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.99 E-value=22 Score=32.55 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=24.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHh
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 432 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e 432 (507)
++..++.++.+.......|..+.-+.+.|..+|+..+.+++..++.
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkR 155 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKR 155 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445555555555555655555555555544443
No 321
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.94 E-value=5.5 Score=35.87 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=9.5
Q ss_pred HHhhHHHHHHHHHhhHH
Q 010571 391 IDAIKEDKRVLELSLTE 407 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~ 407 (507)
+++|+++.+.++..|.+
T Consensus 227 i~~lkeeia~Lkk~L~q 243 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQ 243 (305)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 56666666655544433
No 322
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=82.93 E-value=12 Score=30.79 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=22.6
Q ss_pred hhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571 413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 413 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
..++..++.....+......+.....++..+....++.++....+..++...
T Consensus 22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~ 73 (135)
T TIGR03495 22 RNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQA 73 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443344444444443333
No 323
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=82.84 E-value=30 Score=29.86 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=25.0
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
...+.+++..+...+........+.++.+.+.+..+.+.+++.+++..
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~ 95 (167)
T PRK08475 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVE 95 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555545555555555555555555554444433
No 324
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.74 E-value=15 Score=26.66 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=4.1
Q ss_pred hHHHHHHhhcc
Q 010571 415 FREKIDEVNST 425 (507)
Q Consensus 415 l~~~~~~~~~~ 425 (507)
|+.++++++++
T Consensus 23 Lq~e~eeLke~ 33 (72)
T PF06005_consen 23 LQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 325
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=82.67 E-value=13 Score=34.31 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=12.3
Q ss_pred hHHHHHHhhccchhhHHhHHHHHhhHh
Q 010571 415 FREKIDEVNSTHSELSKELSSVQGQLV 441 (507)
Q Consensus 415 l~~~~~~~~~~~~~~~~e~~~~~~~~~ 441 (507)
|+.+|.+-++.+.+.+.|+.+++.||-
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQL~ 99 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQLA 99 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444444444444444454443
No 326
>smart00284 OLF Olfactomedin-like domains.
Probab=82.58 E-value=41 Score=31.22 Aligned_cols=166 Identities=10% Similarity=0.004 Sum_probs=86.6
Q ss_pred CCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCcccee---eEEEC
Q 010571 24 RPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC---MVKWG 100 (507)
Q Consensus 24 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~---~~~~~ 100 (507)
+|.+-.|.+.++.++.||.--. .+..+..||+.+.+-.....++... .. ...|-...+++ .++-.
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~Lp~a~-----y~--~~~~Y~~~~~sdiDlAvDE 137 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPLLNGAG-----YN--NRFPYAWGGFSDIDLAVDE 137 (255)
T ss_pred CCCccccccEEEECceEEEEec-----CCccEEEEECCCCcEEEEEecCccc-----cc--cccccccCCCccEEEEEcC
Confidence 4555667777888888888543 3467999999998765444332110 00 00111111222 23333
Q ss_pred CEEEEE-cccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc
Q 010571 101 TKLLIL-GGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 179 (507)
Q Consensus 101 ~~iyv~-GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~ 179 (507)
+-|.++ ....... .-.+-.+||.|..-...-.+ ..|....+ -+..+-+.||+.-..... ...-.++||+.+.+
T Consensus 138 ~GLWvIYat~~~~g--~ivvSkLnp~tL~ve~tW~T-~~~k~sa~-naFmvCGvLY~~~s~~~~--~~~I~yayDt~t~~ 211 (255)
T smart00284 138 NGLWVIYATEQNAG--KIVISKLNPATLTIENTWIT-TYNKRSAS-NAFMICGILYVTRSLGSK--GEKVFYAYDTNTGK 211 (255)
T ss_pred CceEEEEeccCCCC--CEEEEeeCcccceEEEEEEc-CCCccccc-ccEEEeeEEEEEccCCCC--CcEEEEEEECCCCc
Confidence 444443 2222211 23456788877654443322 22333222 445567788888532211 13347889998876
Q ss_pred EEEeecCCCCCCCCCCceEEEE--cCcEEEEE
Q 010571 180 WDAVEVTQTPPAPRYDHSAALH--ANRYLIVF 209 (507)
Q Consensus 180 W~~~~~~g~~p~~r~~~~~~~~--~~~~l~i~ 209 (507)
=..+.+ +.+.+...++++.+ .++.||++
T Consensus 212 ~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 212 EGHLDI--PFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred cceeee--eeccccccceeceeCCCCCeEEEE
Confidence 444432 34444455555555 34678876
No 327
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=82.58 E-value=46 Score=32.20 Aligned_cols=135 Identities=14% Similarity=0.142 Sum_probs=77.0
Q ss_pred CEEEEEcCCC--C--CccC-CceEEEECCCC-----ceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEc
Q 010571 38 QKLYIVGGSR--N--GRFL-SDVQVFDLRSL-----AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG 107 (507)
Q Consensus 38 ~~lyv~GG~~--~--~~~~-~~~~~~d~~t~-----~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~G 107 (507)
..++++|... + .... ..+++|+.... +++.+..... +-.-++++.++++|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~----------------~g~V~ai~~~~~~lv~~~ 105 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV----------------KGPVTAICSFNGRLVVAV 105 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE----------------SS-EEEEEEETTEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee----------------cCcceEhhhhCCEEEEee
Confidence 4677777521 1 1122 56899999885 5555544321 233567778899977766
Q ss_pred ccCCCCCCcceEEEEECCCCc-EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEE--EEEcCCCcEEEee
Q 010571 108 GHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH--FLDLETMTWDAVE 184 (507)
Q Consensus 108 G~~~~~~~~~~~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~--~~d~~t~~W~~~~ 184 (507)
| +.+.+|++.... +.... .+..+....++.++++.|++ |- ...++. .|+....+-..+.
T Consensus 106 g--------~~l~v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~I~v-gD------~~~sv~~~~~~~~~~~l~~va 167 (321)
T PF03178_consen 106 G--------NKLYVYDLDNSKTLLKKA---FYDSPFYITSLSVFKNYILV-GD------AMKSVSLLRYDEENNKLILVA 167 (321)
T ss_dssp T--------TEEEEEEEETTSSEEEEE---EE-BSSSEEEEEEETTEEEE-EE------SSSSEEEEEEETTTE-EEEEE
T ss_pred c--------CEEEEEEccCcccchhhh---eecceEEEEEEeccccEEEE-EE------cccCEEEEEEEccCCEEEEEE
Confidence 5 247788887777 77776 44444466667777886665 32 233444 5576555566665
Q ss_pred cCCCCCCCCCCceEEEE-cCcEEEEEe
Q 010571 185 VTQTPPAPRYDHSAALH-ANRYLIVFG 210 (507)
Q Consensus 185 ~~g~~p~~r~~~~~~~~-~~~~l~i~G 210 (507)
- -+.++...++..+ .++ .++.+
T Consensus 168 ~---d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 168 R---DYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp E---ESS-BEEEEEEEE-SSS-EEEEE
T ss_pred e---cCCCccEEEEEEecCCc-EEEEE
Confidence 2 3345555555566 444 44433
No 328
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=82.57 E-value=13 Score=31.63 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=8.4
Q ss_pred HHhhccchhhHHhHHHHHhhHh
Q 010571 420 DEVNSTHSELSKELSSVQGQLV 441 (507)
Q Consensus 420 ~~~~~~~~~~~~e~~~~~~~~~ 441 (507)
+....+++..+++++...++++
T Consensus 46 ~~~~~~l~~~~~el~~~~~~l~ 67 (158)
T PF03938_consen 46 KALQKELQAKQKELQKLQQKLQ 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333433333333
No 329
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.53 E-value=82 Score=34.62 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=25.4
Q ss_pred cceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeee
Q 010571 30 KHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRL 70 (507)
Q Consensus 30 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~ 70 (507)
..+-+++++.||+... .+.++.+|..|++ |+.-+.
T Consensus 187 e~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 187 QATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred ccCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCC
Confidence 3445677999999855 3578999999874 876554
No 330
>PTZ00421 coronin; Provisional
Probab=82.41 E-value=65 Score=33.40 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=36.5
Q ss_pred CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571 152 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 230 (507)
Q Consensus 152 ~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~ 230 (507)
+.+++.||.+ ..+.++|+.+.+-...- .+ ....-.++....++.+++.|+.+ ..+.+||+.++.
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l-~~---h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVEVI-KC---HSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEEEE-cC---CCCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence 3577777653 25888898876532221 11 11112233334456677777765 458899998765
No 331
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=82.40 E-value=21 Score=33.14 Aligned_cols=46 Identities=9% Similarity=0.205 Sum_probs=23.5
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV 436 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~ 436 (507)
...+.+++..+...+........+.++..++.+.++++.+++.+++
T Consensus 31 ~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i 76 (250)
T PRK14474 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASF 76 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444445555555555555554444433
No 332
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.35 E-value=12 Score=41.43 Aligned_cols=9 Identities=22% Similarity=0.324 Sum_probs=4.1
Q ss_pred ceEEEECCC
Q 010571 54 DVQVFDLRS 62 (507)
Q Consensus 54 ~~~~~d~~t 62 (507)
-+..||+.+
T Consensus 616 v~ir~~~~~ 624 (1758)
T KOG0994|consen 616 VLIRYDPRT 624 (1758)
T ss_pred hheeccCCC
Confidence 344455444
No 333
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.33 E-value=21 Score=33.11 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=14.0
Q ss_pred hhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHH
Q 010571 428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 461 (507)
Q Consensus 428 ~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~ 461 (507)
..++.+...+.+++.+++.+.+.|..++++++++
T Consensus 197 ~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 197 EKDRKLELKKEELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433
No 334
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=82.27 E-value=29 Score=32.12 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=17.3
Q ss_pred HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhH
Q 010571 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKEL 433 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~ 433 (507)
+.++.+..+|++.... ....|+++++.+...+....+|+
T Consensus 66 ~~ak~eLqe~eek~e~---~l~~Lq~ql~~l~akI~k~~~el 104 (258)
T PF15397_consen 66 QQAKAELQEWEEKEES---KLSKLQQQLEQLDAKIQKTQEEL 104 (258)
T ss_pred HHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433322 44445555555555444444443
No 335
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=82.18 E-value=40 Score=30.78 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=71.8
Q ss_pred CcEEEeecC--CCCCCCccc-ceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcC
Q 010571 127 NLCGVMETS--GKVPVARGG-HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN 203 (507)
Q Consensus 127 ~~W~~~~~~--g~~p~~r~~-~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 203 (507)
..|+...+. +..+.|-.+ +.+.--.|.|+..||-. -+|..|+++++.+..-- -..-+-|+.+.-+.
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~r----GHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREYR----GHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEEc----CCcceeeeeeeccc
Confidence 456665531 223333332 22222467888888732 58999999999877641 22345555554322
Q ss_pred cEEEEEeCCCCCcCCCcEEEEECCCCcEEee-eec--CCCCCCCcc--eEEEEECCEEEEEeccCCCCCcceEEEEEcCc
Q 010571 204 RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP-EIK--GDLVTGRAG--HAGITIDENWYIVGGGDNNNGCQETIVLNMTK 278 (507)
Q Consensus 204 ~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~-~~~--~~~p~~r~~--~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~ 278 (507)
.-=++.|+-++ .+-++|..+.+-.++ +.- ..+-.|-.+ -.+...+...+++||+-. +-++++..
T Consensus 168 ~~qilsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrs 236 (325)
T KOG0649|consen 168 NGQILSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRS 236 (325)
T ss_pred CcceeecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccC
Confidence 22344555443 366778888765553 211 112122122 245556677888887532 33455444
Q ss_pred CeeEEeccC
Q 010571 279 LAWSILTSV 287 (507)
Q Consensus 279 ~~W~~~~~~ 287 (507)
.+=+++-++
T Consensus 237 se~t~vfpi 245 (325)
T KOG0649|consen 237 SESTCVFPI 245 (325)
T ss_pred CCceEEEec
Confidence 444444333
No 336
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=82.10 E-value=12 Score=41.59 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhHHHHhhhhhhHHHHHHhh
Q 010571 395 KEDKRVLELSLTEVRTENSRFREKIDEVN 423 (507)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 423 (507)
+++....+..+....++..+|...+++++
T Consensus 1604 ~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1604 QEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444455544444444
No 337
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=82.10 E-value=20 Score=37.43 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhHH--------HHHHHHHHHHHhHHH
Q 010571 452 AQIAELQKMLESSQ--------TIENEVQILRQQKSA 480 (507)
Q Consensus 452 ~~~~e~~~~~~~~~--------~~e~e~~~~~~~~~~ 480 (507)
+++.++++.|+..+ -+--|+.+|+++++.
T Consensus 587 qqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqa 623 (961)
T KOG4673|consen 587 QQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQA 623 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544433 223356666666653
No 338
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=82.09 E-value=19 Score=32.27 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 010571 466 TIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~ 483 (507)
++..+++.+++++..+.+
T Consensus 129 el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 129 ELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHhhHH
Confidence 444455555554443333
No 339
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=82.05 E-value=62 Score=32.89 Aligned_cols=99 Identities=14% Similarity=0.259 Sum_probs=50.4
Q ss_pred CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCC----CCCcccceEEEE-------CCEEEEEcCcCCCCCccC
Q 010571 100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV----PVARGGHSVTLV-------GSRLIIFGGEDRSRKLLN 168 (507)
Q Consensus 100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~----p~~r~~~~~~~~-------~~~l~~~GG~~~~~~~~~ 168 (507)
++.|+++-|. ...-+||-.-..|....- |++ .....+|.+... +...|+--+.++.
T Consensus 226 g~~iLvvsg~-------aqakl~DRdG~~~~e~~K-GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt----- 292 (641)
T KOG0772|consen 226 GDQILVVSGS-------AQAKLLDRDGFEIVEFSK-GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT----- 292 (641)
T ss_pred CCeEEEEecC-------cceeEEccCCceeeeeec-cchhhhhhhccCCceeeeeccccccCcccceEEecCCCc-----
Confidence 7888888874 346678888888877643 221 122344544432 2246666555432
Q ss_pred cEEEEEcCC--CcEEEeecCCCCCCCCCCceEEEEc-CcEEEEEeCCCC
Q 010571 169 DVHFLDLET--MTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSH 214 (507)
Q Consensus 169 ~~~~~d~~t--~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~i~GG~~~ 214 (507)
+-++|... .+-..+.+.+.. ..|...+.|.++ ++.+ |.+|+.+
T Consensus 293 -lRiWdv~~~k~q~qVik~k~~~-g~Rv~~tsC~~nrdg~~-iAagc~D 338 (641)
T KOG0772|consen 293 -LRIWDVNNTKSQLQVIKTKPAG-GKRVPVTSCAWNRDGKL-IAAGCLD 338 (641)
T ss_pred -EEEEecCCchhheeEEeeccCC-CcccCceeeecCCCcch-hhhcccC
Confidence 33333322 233333333222 245555555553 4444 7777654
No 340
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.01 E-value=17 Score=26.57 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=16.4
Q ss_pred hhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571 410 TENSRFREKIDEVNSTHSELSKELSSVQGQL 440 (507)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~ 440 (507)
....-|+.+|+++++++..+.++.+..+...
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r 48 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQR 48 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445555666666666655555544443333
No 341
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=81.95 E-value=17 Score=40.32 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=11.5
Q ss_pred hhhHHHHhhccccccCCcc
Q 010571 352 SVTAAYALAKSEKLDIPKT 370 (507)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~ 370 (507)
..|-.|+|.-.....-|.+
T Consensus 378 lSTLEYA~RAKnIkNKPev 396 (1041)
T KOG0243|consen 378 LSTLEYAHRAKNIKNKPEV 396 (1041)
T ss_pred HHHHHHHHHhhhccCCCcc
Confidence 3455677766666655555
No 342
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=81.86 E-value=2.9 Score=42.13 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=33.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCC
Q 010571 443 ERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSG 497 (507)
Q Consensus 443 ~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (507)
+++++.+++.++.++++++.+..+.++++.++++|+++++++++++++...+.+.
T Consensus 247 l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~ 301 (406)
T PF02388_consen 247 LQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAEYGD 301 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444455555555555555555566677777777777777777776665444443
No 343
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=81.75 E-value=22 Score=35.38 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=9.0
Q ss_pred HHHhhHHHHhhhhhhHHHHHH
Q 010571 401 LELSLTEVRTENSRFREKIDE 421 (507)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~~~~ 421 (507)
.+..|++.+.+++-|+-++..
T Consensus 402 tqk~LqEsr~eKetLqlelkK 422 (527)
T PF15066_consen 402 TQKHLQESRNEKETLQLELKK 422 (527)
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333444444444444444433
No 344
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=81.48 E-value=44 Score=30.79 Aligned_cols=272 Identities=14% Similarity=0.170 Sum_probs=112.0
Q ss_pred EEEECCEEEE--EcC-CCCCccCCceEEEECCC-CceeEeeeccccccCccccCCccCCCCCccce--eeEEECCEEEEE
Q 010571 33 AAVFDQKLYI--VGG-SRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDH--CMVKWGTKLLIL 106 (507)
Q Consensus 33 ~~~~~~~lyv--~GG-~~~~~~~~~~~~~d~~t-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~--~~~~~~~~iyv~ 106 (507)
+.+.++.||. ++| .++-..+.-.|+=.-.. ++|....-+... ++--+...+| ++-+++|+||++
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~----------H~~yptvnyHCmSMGv~~NRLfa~ 90 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDL----------HPDYPTVNYHCMSMGVVGNRLFAV 90 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS-------------TTTTTEEEE-B-EEEETTEEEEE
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhc----------CCCCCccceeeeeeeeecceeeEE
Confidence 3456777773 444 33333333344444444 467654333211 2222334444 466789999987
Q ss_pred cccCC-CCCCcceEEEEE---CCCCcEEEeecCCCCCC-------CcccceEEEECCEEEEEcCcCCCCC-ccCcEEEEE
Q 010571 107 GGHYK-KSSDSMIVRFID---LETNLCGVMETSGKVPV-------ARGGHSVTLVGSRLIIFGGEDRSRK-LLNDVHFLD 174 (507)
Q Consensus 107 GG~~~-~~~~~~~~~~~d---~~t~~W~~~~~~g~~p~-------~r~~~~~~~~~~~l~~~GG~~~~~~-~~~~~~~~d 174 (507)
=-... ..........|+ +.++.|+.-... ..|. ...-|+.+.+++.-|.+|=.+++-. .--.+..|.
T Consensus 91 iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs 169 (367)
T PF12217_consen 91 IETRTVASNKMVRAELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFS 169 (367)
T ss_dssp EEEEETTT--EEEEEEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEET
T ss_pred EeehhhhhhhhhhhhhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEec
Confidence 53321 112233344444 567888765432 2332 3455788888887778876544321 111233332
Q ss_pred cC--CC-cEEEeecCCCCCCCCCCceEEEEcCcEEEEEe-CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEE
Q 010571 175 LE--TM-TWDAVEVTQTPPAPRYDHSAALHANRYLIVFG-GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI 250 (507)
Q Consensus 175 ~~--t~-~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G-G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~ 250 (507)
.. +. ....-.+..... +-..-.++.+-++.||+.- |......-..+++-+.....|..+... -...-...-.+
T Consensus 170 ~~~~sp~~~vrr~i~sey~-~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFa 246 (367)
T PF12217_consen 170 DAFASPGVFVRRIIPSEYE-RNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFA 246 (367)
T ss_dssp TTTT-TT--EEEE--GGG--TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---EE
T ss_pred ccccCCcceeeeechhhhc-cccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCCce
Confidence 11 11 111111100111 1111123344566677654 333323345678888888899997531 11112222456
Q ss_pred EECCEEEEEeccCC---------CC----CcceEEEEEcC-------cCeeEEeccCCCCCCCCCCCCceEEEEEcCceE
Q 010571 251 TIDENWYIVGGGDN---------NN----GCQETIVLNMT-------KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH 310 (507)
Q Consensus 251 ~~~~~l~v~GG~~~---------~~----~~~d~~~~d~~-------~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 310 (507)
.+++.|||||--.. +. ....++....+ .-.|..|..---.--....+..+.++++.++-.
T Consensus 247 kvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~l 326 (367)
T PF12217_consen 247 KVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWL 326 (367)
T ss_dssp EETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEE
T ss_pred eeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEE
Confidence 77999999995311 11 12233433333 334444322100001123345566677776645
Q ss_pred EEEEcccC
Q 010571 311 LVAFGGYN 318 (507)
Q Consensus 311 l~v~GG~~ 318 (507)
-++|||.+
T Consensus 327 yy~FGgED 334 (367)
T PF12217_consen 327 YYIFGGED 334 (367)
T ss_dssp EEEEEEB-
T ss_pred EEEecCcc
Confidence 56899965
No 345
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.41 E-value=9.5 Score=33.07 Aligned_cols=13 Identities=8% Similarity=0.266 Sum_probs=4.7
Q ss_pred hhhhhHHHHHHhh
Q 010571 411 ENSRFREKIDEVN 423 (507)
Q Consensus 411 ~~~~l~~~~~~~~ 423 (507)
+...|+.++..+.
T Consensus 94 ~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 94 EVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 346
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=81.38 E-value=1.1e+02 Score=35.26 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred ceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEc
Q 010571 31 HAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILG 107 (507)
Q Consensus 31 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~G 107 (507)
+++++. ++.|||.-. ....+.++|+.++.-..+...+...............+...-...++.- ++.||+..
T Consensus 627 ~GIavd~~gn~LYVaDt-----~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADT-----ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred cEEEEeCCCCEEEEEeC-----CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Q ss_pred ccCCCCCCcceEEEEECCCCcEEEeecCC------------CCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEc
Q 010571 108 GHYKKSSDSMIVRFIDLETNLCGVMETSG------------KVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL 175 (507)
Q Consensus 108 G~~~~~~~~~~~~~~d~~t~~W~~~~~~g------------~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~ 175 (507)
.. .+.+++||+.++....+...| .....-.+.+...-++.||+.... .+.|.+||+
T Consensus 702 ~~------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~ 769 (1057)
T PLN02919 702 AG------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDL 769 (1057)
T ss_pred CC------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEEC
Q ss_pred CCCcEEEeecCCCCCCCC-----------------CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecC
Q 010571 176 ETMTWDAVEVTQTPPAPR-----------------YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG 238 (507)
Q Consensus 176 ~t~~W~~~~~~g~~p~~r-----------------~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~ 238 (507)
.++....+...+...... .-.++++..++.+||....+ +.|.+||+.++....+...+
T Consensus 770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEeccC
Q ss_pred C--------CCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCe
Q 010571 239 D--------LVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA 280 (507)
Q Consensus 239 ~--------~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~ 280 (507)
. .+........+.+ ++++||....++. +.++|+.+..
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~-----Irvid~~~~~ 891 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL-----IRYLDLNKGE 891 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE-----EEEEECCCCc
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=81.35 E-value=54 Score=31.70 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=74.1
Q ss_pred CEEEEEcccCCCCC---Cc-ceEEEEECCCC-----cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEE
Q 010571 101 TKLLILGGHYKKSS---DS-MIVRFIDLETN-----LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH 171 (507)
Q Consensus 101 ~~iyv~GG~~~~~~---~~-~~~~~~d~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~ 171 (507)
...+++|....... .. -.+.+|+.... +++.+. ..+..-.-++++.+++++++.-| +.+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g--------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG--------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET--------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec--------CEEE
Confidence 46677775432221 12 56889998885 566554 22223335667778999766655 3688
Q ss_pred EEEcCCCc-EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEE
Q 010571 172 FLDLETMT-WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI 250 (507)
Q Consensus 172 ~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~ 250 (507)
+|++...+ +...... ..+-...++.++ ++ .+++|-...+ -.++.|+....+...+.. -+.++.-.++.
T Consensus 111 v~~l~~~~~l~~~~~~---~~~~~i~sl~~~-~~-~I~vgD~~~s---v~~~~~~~~~~~l~~va~---d~~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKAFY---DSPFYITSLSVF-KN-YILVGDAMKS---VSLLRYDEENNKLILVAR---DYQPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEEEE----BSSSEEEEEEE-TT-EEEEEESSSS---EEEEEEETTTE-EEEEEE---ESS-BEEEEEE
T ss_pred EEEccCcccchhhhee---cceEEEEEEecc-cc-EEEEEEcccC---EEEEEEEccCCEEEEEEe---cCCCccEEEEE
Confidence 88888777 8777643 222233344444 55 4445543211 234456765555666532 33466655666
Q ss_pred EE-CCEEEEEec
Q 010571 251 TI-DENWYIVGG 261 (507)
Q Consensus 251 ~~-~~~l~v~GG 261 (507)
.+ ++. .++++
T Consensus 180 ~l~d~~-~~i~~ 190 (321)
T PF03178_consen 180 FLVDED-TIIVG 190 (321)
T ss_dssp EE-SSS-EEEEE
T ss_pred EecCCc-EEEEE
Confidence 66 655 44444
No 348
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=81.29 E-value=31 Score=30.99 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=30.8
Q ss_pred HHhhccchhhHHhHHHHHhhHhhhhh---hhhhHHHHHHHHHHHHHhHH-----HHHHHHHHHHHhHHHHHHHH
Q 010571 420 DEVNSTHSELSKELSSVQGQLVAERS---RCFKLEAQIAELQKMLESSQ-----TIENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 420 ~~~~~~~~~~~~e~~~~~~~~~~~~~---~~~~~e~~~~e~~~~~~~~~-----~~e~e~~~~~~~~~~~~~~~ 485 (507)
..++.++-+.++++..++.+++.++. .-...+.+|+.+++++...+ .+.+...+..+++..+++++
T Consensus 50 ~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~ 123 (206)
T PF14988_consen 50 SELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444432 22334455555555555544 33334445555555666655
No 349
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=81.26 E-value=24 Score=32.72 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=23.8
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ 437 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~ 437 (507)
...+.+++..+...+........+....+.+.+..+.+.+++.+++.
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~ 77 (246)
T TIGR03321 31 LDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLL 77 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555444444455555555555555544444433
No 350
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=81.24 E-value=18 Score=40.56 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=12.0
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 439 QLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 439 ~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
.+.+++++..+++.++.++++++..++
T Consensus 502 k~~~~~~~~~~l~~~~~~~~eele~~q 528 (1317)
T KOG0612|consen 502 KLSEEEAKKRKLEALVRQLEEELEDAQ 528 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 351
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=81.14 E-value=29 Score=30.51 Aligned_cols=48 Identities=8% Similarity=0.158 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhh
Q 010571 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ 439 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~ 439 (507)
..+.+++..+...+........+..+.+.+.+.++.+.+.+.+++..+
T Consensus 54 ~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 54 GMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555566666666666665555555444
No 352
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.08 E-value=25 Score=33.57 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=5.5
Q ss_pred hhhhhhhHHHHHHHH
Q 010571 443 ERSRCFKLEAQIAEL 457 (507)
Q Consensus 443 ~~~~~~~~e~~~~e~ 457 (507)
++.+++++++.+.++
T Consensus 117 Lkd~lee~eE~~~~~ 131 (302)
T PF09738_consen 117 LKDKLEELEETLAQL 131 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 353
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=80.96 E-value=30 Score=28.81 Aligned_cols=54 Identities=4% Similarity=0.099 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
...+++..++.-.++.+.+.....++..+.+..++.+.+++.++.+.++..+..
T Consensus 61 ~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k 114 (139)
T PF05615_consen 61 SILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNK 114 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555554444444433333
No 354
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.92 E-value=14 Score=40.40 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=26.5
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+.+.++.++.++++++...++++++.+..++.+++...+++..+...+++...++
T Consensus 644 ~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie 698 (1072)
T KOG0979|consen 644 EIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIE 698 (1072)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333444445555555555555555555555555444444444444444443333
No 355
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.84 E-value=18 Score=35.77 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=13.5
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 010571 459 KMLESSQTIENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 459 ~~~~~~~~~e~e~~~~~~~~~~~~~~~ 485 (507)
++.+.+.+...+-.+||+|+..+...+
T Consensus 400 Kq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 400 KQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556666655544443
No 356
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.78 E-value=24 Score=39.13 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHh
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLV 441 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~ 441 (507)
+......+|++++.+++.+++++.++++.+.
T Consensus 442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 442 EKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556667777777776666666555444
No 357
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.77 E-value=13 Score=35.37 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=8.6
Q ss_pred HHhhccchhhHHhHHHHHhhHhhh
Q 010571 420 DEVNSTHSELSKELSSVQGQLVAE 443 (507)
Q Consensus 420 ~~~~~~~~~~~~e~~~~~~~~~~~ 443 (507)
+++....++++.+++.++++.+.+
T Consensus 242 EeL~~G~~kL~~~~etLEqq~~~L 265 (365)
T KOG2391|consen 242 EELNIGKQKLVAMKETLEQQLQSL 265 (365)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 358
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=80.75 E-value=13 Score=28.75 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHH
Q 010571 466 TIENEVQILRQQKS 479 (507)
Q Consensus 466 ~~e~e~~~~~~~~~ 479 (507)
.|++.++.+|.+++
T Consensus 58 QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 58 QLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666655
No 359
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=80.75 E-value=10 Score=33.22 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=5.2
Q ss_pred hhHHHHHHHHHhh
Q 010571 393 AIKEDKRVLELSL 405 (507)
Q Consensus 393 ~l~~~~~~~~~~~ 405 (507)
.|+.+...++..+
T Consensus 100 rLkrELa~Le~~l 112 (195)
T PF12761_consen 100 RLKRELAELEEKL 112 (195)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 360
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=80.63 E-value=33 Score=29.46 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=27.1
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
...+.+++..+...+........+..+...+.++.+.+.+++.+.+..
T Consensus 34 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~ 81 (164)
T PRK14471 34 LGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILK 81 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666555555555555556666555555555444433
No 361
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.63 E-value=7 Score=34.70 Aligned_cols=33 Identities=36% Similarity=0.598 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 010571 449 KLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE 484 (507)
Q Consensus 449 ~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~ 484 (507)
+.+++++++++++.+ .+++.+.+++|.+.+++|
T Consensus 158 ~~~~ei~~lk~el~~---~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 158 KLSEEIEKLKKELEK---KEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 333444444444333 344444555554444443
No 362
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=80.54 E-value=23 Score=31.27 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=34.6
Q ss_pred HhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHH----HHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010571 421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ----KMLESSQTIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 421 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~----~~~~~~~~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
.++.++.+.+.+..+...++..++.++.+++++.+.+. ....+...++...+.+.++....+.+.+.
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444445555554433333 22334446777777788877777777653
No 363
>smart00284 OLF Olfactomedin-like domains.
Probab=80.43 E-value=50 Score=30.72 Aligned_cols=162 Identities=14% Similarity=0.046 Sum_probs=85.3
Q ss_pred CCEEEEEcccCCCCCCcceEEEEEC----CCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEc
Q 010571 100 GTKLLILGGHYKKSSDSMIVRFIDL----ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL 175 (507)
Q Consensus 100 ~~~iyv~GG~~~~~~~~~~~~~~d~----~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~ 175 (507)
++++|++.+.... .+.+..|.. ..+.+...- .+|.+-.|...+++++.+|+.-.. .+.|.+||+
T Consensus 34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDL 101 (255)
T ss_pred CceEEEEccccCC---CcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEecC------CccEEEEEC
Confidence 4778888665311 234556542 234443332 577788888899999999985442 467999999
Q ss_pred CCCcEEEeec---CC---CCCCCCCC---ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc----EEeeeecCCCCC
Q 010571 176 ETMTWDAVEV---TQ---TPPAPRYD---HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE----WSQPEIKGDLVT 242 (507)
Q Consensus 176 ~t~~W~~~~~---~g---~~p~~r~~---~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~----W~~~~~~~~~p~ 242 (507)
.+.+-..... .+ ..|-...+ .-.++-.++ |+++=....+.-.--+-.+|+.+.. |.. ..+.
T Consensus 102 ~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T-----~~~k 175 (255)
T smart00284 102 TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG-LWVIYATEQNAGKIVISKLNPATLTIENTWIT-----TYNK 175 (255)
T ss_pred CCCcEEEEEecCccccccccccccCCCccEEEEEcCCc-eEEEEeccCCCCCEEEEeeCcccceEEEEEEc-----CCCc
Confidence 9987653331 10 11111111 122333445 5554322222111123456666543 543 2332
Q ss_pred CCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCee
Q 010571 243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW 281 (507)
Q Consensus 243 ~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W 281 (507)
+ ....++++-+.||++-... .....-.+.||+.+.+=
T Consensus 176 ~-sa~naFmvCGvLY~~~s~~-~~~~~I~yayDt~t~~~ 212 (255)
T smart00284 176 R-SASNAFMICGILYVTRSLG-SKGEKVFYAYDTNTGKE 212 (255)
T ss_pred c-cccccEEEeeEEEEEccCC-CCCcEEEEEEECCCCcc
Confidence 2 2225666677888874211 11122367899888753
No 364
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.38 E-value=11 Score=39.86 Aligned_cols=8 Identities=13% Similarity=0.476 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 010571 455 AELQKMLE 462 (507)
Q Consensus 455 ~e~~~~~~ 462 (507)
.++++++.
T Consensus 332 ~~l~~eL~ 339 (563)
T TIGR00634 332 EKIKEELD 339 (563)
T ss_pred HHHHHHHH
Confidence 33333333
No 365
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=80.37 E-value=24 Score=38.48 Aligned_cols=18 Identities=17% Similarity=0.558 Sum_probs=9.2
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 010571 468 ENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 468 e~e~~~~~~~~~~~~~~~ 485 (507)
+.++.+++.+++.++..+
T Consensus 391 e~ki~~Lq~kie~Lee~l 408 (775)
T PF10174_consen 391 ERKINVLQKKIENLEEQL 408 (775)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555444443
No 366
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.28 E-value=25 Score=34.61 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=14.4
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhh
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS 445 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 445 (507)
+..+|+..+..++...+++..+.+...++++.++.
T Consensus 312 entelRs~~arlksl~dklaee~qr~sd~LE~lrl 346 (502)
T KOG0982|consen 312 ENTELRSLIARLKSLADKLAEEDQRSSDLLEALRL 346 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 367
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.26 E-value=29 Score=27.89 Aligned_cols=17 Identities=18% Similarity=0.515 Sum_probs=6.5
Q ss_pred HHHHHHHhHHHHHHHHH
Q 010571 470 EVQILRQQKSAFEQEME 486 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~ 486 (507)
++..+.++.+.++++++
T Consensus 85 ri~tLekQe~~l~e~l~ 101 (119)
T COG1382 85 RIKTLEKQEEKLQERLE 101 (119)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 368
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=80.24 E-value=15 Score=31.34 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=11.1
Q ss_pred hhhhHHHHHHhhccchhhHHhHHH
Q 010571 412 NSRFREKIDEVNSTHSELSKELSS 435 (507)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~e~~~ 435 (507)
...++.+++..+.+++...++++.
T Consensus 45 ~~~~~~~l~~~~~el~~~~~~l~~ 68 (158)
T PF03938_consen 45 FKALQKELQAKQKELQKLQQKLQS 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555444444443
No 369
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=80.10 E-value=21 Score=36.37 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=21.9
Q ss_pred HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHH
Q 010571 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ 437 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~ 437 (507)
..+++++..+...+....+-..++.+..+++++.+++.++|.+++.
T Consensus 28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii 73 (445)
T PRK13428 28 RLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVV 73 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444444444444444555444444433
No 370
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.05 E-value=69 Score=32.14 Aligned_cols=262 Identities=11% Similarity=0.089 Sum_probs=119.5
Q ss_pred CCCeEEeccCCCCCCccccceEEEE---CCEEEEEcCCCCCccCCceEEEECC--CCceeEeeeccccccCccccCCccC
Q 010571 12 YDLWVTLPVSGARPSPRYKHAAAVF---DQKLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLE 86 (507)
Q Consensus 12 ~~~W~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~--t~~W~~~~~~~~~~~~~~~~~~~~~ 86 (507)
...|+++.. +....+.-..+..+ .+.-+++|-.. .++... -.+|......... .
T Consensus 74 G~~W~q~~~--p~~~~~~L~~V~F~~~d~~~GwAVG~~G--------~IL~T~DGG~tW~~~~~~~~~-----------~ 132 (398)
T PLN00033 74 SSEWEQVDL--PIDPGVVLLDIAFVPDDPTHGFLLGTRQ--------TLLETKDGGKTWVPRSIPSAE-----------D 132 (398)
T ss_pred CCccEEeec--CCCCCCceEEEEeccCCCCEEEEEcCCC--------EEEEEcCCCCCceECccCccc-----------c
Confidence 457998863 22222344555542 34777777621 233333 3489885421100 0
Q ss_pred CCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC-CEEEEEcCcCCCCC
Q 010571 87 VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRK 165 (507)
Q Consensus 87 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~ 165 (507)
........++...++..|++|-.. .++.=.-.-.+|+.+.....+|.. .+....++ +.+++.|..
T Consensus 133 ~~~~~~l~~v~f~~~~g~~vG~~G-------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~----- 198 (398)
T PLN00033 133 EDFNYRFNSISFKGKEGWIIGKPA-------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE----- 198 (398)
T ss_pred cccccceeeeEEECCEEEEEcCce-------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc-----
Confidence 011112344555578888886321 122222234689988642222322 23344444 467777742
Q ss_pred ccCcEEEEEcCCCcEEEeecCC-CCCCC--------------CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEE-ECCCC
Q 010571 166 LLNDVHFLDLETMTWDAVEVTQ-TPPAP--------------RYDHSAALHANRYLIVFGGCSHSIFFNDLHVL-DLQTN 229 (507)
Q Consensus 166 ~~~~~~~~d~~t~~W~~~~~~g-~~p~~--------------r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~-d~~~~ 229 (507)
..+++-+-.-.+|+.+.... ..|.. -..+++....++.++++|-.+ .+++- |....
T Consensus 199 --G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~ 270 (398)
T PLN00033 199 --GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQP 270 (398)
T ss_pred --ceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCc
Confidence 13444444456898762111 00111 112223334555566666433 23332 22223
Q ss_pred cEEeeeecCCCCCCCcceEEE-EECCEEEEEeccCCCCCcceEEEEEcCcCe-----eEEeccCCCCCCCCCCCCceEEE
Q 010571 230 EWSQPEIKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGCQETIVLNMTKLA-----WSILTSVKGRNPLASEGLSVCSA 303 (507)
Q Consensus 230 ~W~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~-----W~~~~~~~~~~p~~~~~~~~~~~ 303 (507)
.|..+. .|.++...++. ..++.++++|... .++.-+..... |..++.. ..+.....+
T Consensus 271 ~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~~~~-------~~~~~l~~v 333 (398)
T PLN00033 271 YWQPHN----RASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEADIK-------SRGFGILDV 333 (398)
T ss_pred ceEEec----CCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeecccC-------CCCcceEEE
Confidence 488863 33333333333 3366788776421 23333333333 4443221 112233333
Q ss_pred EEcCceEEEEEcccCCCcCCeEEEEECCCCCCCCC
Q 010571 304 IIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRP 338 (507)
Q Consensus 304 ~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~~~ 338 (507)
...++..++++|... -++.-...-..|+..
T Consensus 334 ~~~~d~~~~a~G~~G-----~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 334 GYRSKKEAWAAGGSG-----ILLRSTDGGKSWKRD 363 (398)
T ss_pred EEcCCCcEEEEECCC-----cEEEeCCCCcceeEc
Confidence 444455788878643 344444445566653
No 371
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=79.84 E-value=31 Score=30.02 Aligned_cols=9 Identities=22% Similarity=0.077 Sum_probs=3.6
Q ss_pred HHhhHhhhh
Q 010571 436 VQGQLVAER 444 (507)
Q Consensus 436 ~~~~~~~~~ 444 (507)
.++++++++
T Consensus 67 LqedNqELR 75 (195)
T PF10226_consen 67 LQEDNQELR 75 (195)
T ss_pred HHHHHHHHH
Confidence 334444443
No 372
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=79.83 E-value=12 Score=39.15 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=10.6
Q ss_pred HHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571 435 SVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 435 ~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
+..++++++++..+...+++..+.++++
T Consensus 216 ~~~~e~d~lk~e~~~~~~~i~~~~~~l~ 243 (555)
T TIGR03545 216 KIKEEFDKLKKEGKADKQKIKSAKNDLQ 243 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444333333333333333333333
No 373
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=79.78 E-value=13 Score=31.45 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=11.6
Q ss_pred hhhhHHHHHHhhccchhhHHhHHHHHhh
Q 010571 412 NSRFREKIDEVNSTHSELSKELSSVQGQ 439 (507)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~ 439 (507)
...|..+++++.+..+.+.++...+..+
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaE 108 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAE 108 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333333333
No 374
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.76 E-value=20 Score=25.76 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=6.8
Q ss_pred HHHHHHHhHHHHHHHHH
Q 010571 470 EVQILRQQKSAFEQEME 486 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~ 486 (507)
+..+|..+++.+.++++
T Consensus 48 e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 48 ENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 375
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.61 E-value=9 Score=34.27 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=6.8
Q ss_pred HhhhhhhhhhHHHHHHHHH
Q 010571 440 LVAERSRCFKLEAQIAELQ 458 (507)
Q Consensus 440 ~~~~~~~~~~~e~~~~e~~ 458 (507)
+++.+.+++..+.....++
T Consensus 167 l~~~~~~Le~~~~~~~al~ 185 (216)
T KOG1962|consen 167 LEKKQKKLEKAQKKVDALK 185 (216)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 376
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.60 E-value=30 Score=32.27 Aligned_cols=47 Identities=13% Similarity=0.297 Sum_probs=23.6
Q ss_pred hHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHH
Q 010571 405 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE 451 (507)
Q Consensus 405 ~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e 451 (507)
......+.+++++.+..+..+...++..++..+.+++..+++++-++
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555544444445555555555555554443
No 377
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=79.58 E-value=31 Score=32.11 Aligned_cols=38 Identities=8% Similarity=0.159 Sum_probs=16.7
Q ss_pred hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccc
Q 010571 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTH 426 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 426 (507)
..+.++..-+.-+++..........+|..++...-+.+
T Consensus 227 ~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI 264 (384)
T KOG0972|consen 227 LHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKI 264 (384)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 34455544444444444444444444444444433333
No 378
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=79.43 E-value=33 Score=30.45 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=25.2
Q ss_pred hHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 390 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 390 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
++.-|+...++....+...-.+.-.|+..+-.....+...+.++...+.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~ 59 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQD 59 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455555555555544444455555655555555555554444444433
No 379
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.42 E-value=6 Score=38.25 Aligned_cols=14 Identities=14% Similarity=0.003 Sum_probs=6.0
Q ss_pred EEECCEE--EEEeccC
Q 010571 250 ITIDENW--YIVGGGD 263 (507)
Q Consensus 250 ~~~~~~l--~v~GG~~ 263 (507)
..+++.+ .|-.|..
T Consensus 195 tY~~nvLtv~innGmt 210 (497)
T KOG3838|consen 195 TYYGNVLTVMINNGMT 210 (497)
T ss_pred EEeccEEEEEEcCCCC
Confidence 4445543 3334443
No 380
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=79.32 E-value=15 Score=31.36 Aligned_cols=14 Identities=43% Similarity=0.342 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHHH
Q 010571 448 FKLEAQIAELQKML 461 (507)
Q Consensus 448 ~~~e~~~~e~~~~~ 461 (507)
++++.++.+++++.
T Consensus 54 eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 54 EELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 381
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=79.27 E-value=26 Score=38.43 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 010571 466 TIENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~ 485 (507)
+.-+.+..++.+++.+|.+.
T Consensus 582 k~idaL~alrrhke~LE~e~ 601 (1195)
T KOG4643|consen 582 KYIDALNALRRHKEKLEEEI 601 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666664
No 382
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=79.17 E-value=43 Score=30.73 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=17.1
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 450 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 450 (507)
+.++++.+|..+.....++...++..+.+++..+++++.+
T Consensus 120 ~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~L 159 (338)
T KOG3647|consen 120 RLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEAL 159 (338)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433344444444444444444444443
No 383
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=79.13 E-value=21 Score=36.67 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=7.1
Q ss_pred HHHHHHHhHHHHHHHHH
Q 010571 470 EVQILRQQKSAFEQEME 486 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~ 486 (507)
++.+++.++..++.+++
T Consensus 292 ~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 292 EITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 384
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.06 E-value=8.8 Score=37.68 Aligned_cols=52 Identities=25% Similarity=0.319 Sum_probs=31.9
Q ss_pred HHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHH
Q 010571 407 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 458 (507)
Q Consensus 407 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~ 458 (507)
.......-++..++..+.++++.++++++.+.++...++++..++.+..+..
T Consensus 211 ~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~ 262 (344)
T PF12777_consen 211 EVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQ 262 (344)
T ss_dssp HHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566777777777777766666666666666666555555544433
No 385
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=79.03 E-value=38 Score=30.87 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=30.3
Q ss_pred hHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHH
Q 010571 429 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 429 ~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
++-+|.-.+...+.++..-+++..-++|+.+.....+ -|++++.+-+++++++++.++.
T Consensus 241 Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q 303 (330)
T KOG2991|consen 241 LEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQ 303 (330)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433444444444444455555555555555544 3555555566666666665543
No 386
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=78.94 E-value=40 Score=28.78 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=27.3
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ 439 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~ 439 (507)
...+.+++..+...+........+..+.+.+.+..+.+.+++..++..+
T Consensus 31 ~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~ 79 (159)
T PRK13461 31 KAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEE 79 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665555555555555666666666555554444433
No 387
>PF15556 Zwint: ZW10 interactor
Probab=78.61 E-value=45 Score=29.20 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=7.0
Q ss_pred HHHHHHHhHHHHHHH
Q 010571 470 EVQILRQQKSAFEQE 484 (507)
Q Consensus 470 e~~~~~~~~~~~~~~ 484 (507)
|++.+.+++..+.++
T Consensus 156 eLe~l~qeL~~lkqQ 170 (252)
T PF15556_consen 156 ELERLYQELGTLKQQ 170 (252)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 388
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.51 E-value=28 Score=31.63 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=20.4
Q ss_pred HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHH
Q 010571 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ 437 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~ 437 (507)
..+....++++..+.+..............+++++.+.+++.....
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~ 71 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWE 71 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433
No 389
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=78.46 E-value=46 Score=29.17 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=35.1
Q ss_pred HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHH
Q 010571 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAE 456 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e 456 (507)
.++..+..-++..+.........+++++...+....+.++....+...+++..++...++.++.+
T Consensus 7 a~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkE 71 (205)
T KOG1003|consen 7 AALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKE 71 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33433433444444444445555666666666666666666666665666655555555544443
No 390
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.26 E-value=15 Score=38.51 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 010571 466 TIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~~~~ 488 (507)
++++++++++++++.+++++..+
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555566666666666665544
No 391
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=78.05 E-value=26 Score=31.94 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 010571 466 TIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 466 ~~e~e~~~~~~~~~~~~~~~~~~ 488 (507)
+++.+..++.+++.++.++..++
T Consensus 193 eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 193 EIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666665555554433
No 392
>PRK11519 tyrosine kinase; Provisional
Probab=77.77 E-value=17 Score=39.70 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhh--hhHHHHHHhhccchhhHHhHHHHHhhHhhh--------------hhhhhhH
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENS--RFREKIDEVNSTHSELSKELSSVQGQLVAE--------------RSRCFKL 450 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~--------------~~~~~~~ 450 (507)
+.+.+..++.+....+..+..-+.+.. .+..+.+.....+.+.++++.+.+.++..+ +.+...+
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L 351 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKAL 351 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010571 451 EAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 494 (507)
Q Consensus 451 e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
++++.+++.+.....+.+++..+++++.+..++-.+..-++.++
T Consensus 352 ~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 352 EDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 393
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=77.73 E-value=27 Score=36.43 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=13.8
Q ss_pred HHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHH
Q 010571 402 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSS 435 (507)
Q Consensus 402 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~ 435 (507)
+..+.....+...|+..+..++.+++....++..
T Consensus 294 k~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~ 327 (522)
T PF05701_consen 294 KKELEKAKEEASSLRASVESLRSELEKEKEELER 327 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444433333333
No 394
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=77.52 E-value=17 Score=30.81 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=6.1
Q ss_pred hhhHHHHHHHHHHHHH
Q 010571 447 CFKLEAQIAELQKMLE 462 (507)
Q Consensus 447 ~~~~e~~~~e~~~~~~ 462 (507)
++++...+...+++|.
T Consensus 125 i~~L~kev~~~~erl~ 140 (201)
T KOG4603|consen 125 IQELKKEVAGYRERLK 140 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 395
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=77.48 E-value=8.8 Score=27.31 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=8.3
Q ss_pred hccchhhHHhHHHHHhhHhhh
Q 010571 423 NSTHSELSKELSSVQGQLVAE 443 (507)
Q Consensus 423 ~~~~~~~~~e~~~~~~~~~~~ 443 (507)
..+.+++...+...+++++..
T Consensus 9 ~~EkeeL~~klk~~qeel~~~ 29 (69)
T PF08912_consen 9 AKEKEELNNKLKKQQEELQKL 29 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 333344433344334444333
No 396
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=77.38 E-value=16 Score=37.63 Aligned_cols=8 Identities=38% Similarity=0.455 Sum_probs=3.3
Q ss_pred HHHHHhhH
Q 010571 399 RVLELSLT 406 (507)
Q Consensus 399 ~~~~~~~~ 406 (507)
+.++.-+.
T Consensus 142 rDLE~cie 149 (861)
T KOG1899|consen 142 RDLETCIE 149 (861)
T ss_pred HHHHHHHH
Confidence 44444333
No 397
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=77.31 E-value=46 Score=28.59 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=26.1
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
...+.++...+...+........+....+.+.+..+.+.+.+.+++..
T Consensus 34 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~ 81 (164)
T PRK14473 34 LNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVA 81 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555665555555555555555555555555555555444433
No 398
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=77.09 E-value=21 Score=35.15 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=11.9
Q ss_pred HHHHhhHHHHhhhhhhHHHHHHhhccchh
Q 010571 400 VLELSLTEVRTENSRFREKIDEVNSTHSE 428 (507)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 428 (507)
.|...+.+.......+...+...+..+..
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~k 245 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDK 245 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444444444444444444443333333
No 399
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.06 E-value=40 Score=32.04 Aligned_cols=17 Identities=12% Similarity=0.452 Sum_probs=9.0
Q ss_pred ccchhhHHhhHHHHHHH
Q 010571 385 KDVRTDIDAIKEDKRVL 401 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~ 401 (507)
+.++..+..|+++...+
T Consensus 163 e~Lq~Klk~LEeEN~~L 179 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQL 179 (306)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566555555444
No 400
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=77.05 E-value=38 Score=28.19 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=4.8
Q ss_pred hhhHHHHHHHHHH
Q 010571 447 CFKLEAQIAELQK 459 (507)
Q Consensus 447 ~~~~e~~~~e~~~ 459 (507)
+..++..+.++++
T Consensus 103 ~~~l~~~~~~l~~ 115 (140)
T PRK03947 103 KEELEKALEKLEE 115 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 401
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=77.02 E-value=12 Score=26.84 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=7.1
Q ss_pred HhHHHHHHHHHHHHHhH
Q 010571 462 ESSQTIENEVQILRQQK 478 (507)
Q Consensus 462 ~~~~~~e~e~~~~~~~~ 478 (507)
...++|..|.+.+++++
T Consensus 47 ~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 47 EENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 402
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=76.99 E-value=11 Score=35.21 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=18.3
Q ss_pred hhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571 428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 428 ~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
.++-|++.+...|+++|++...++.+|+.+++-+.
T Consensus 252 ~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 252 ALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455566666665555555555554443
No 403
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=76.88 E-value=48 Score=28.60 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 393 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
.+.+++..+...+........+..+.+.+.+..+.+.+.+.+++..
T Consensus 38 ~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~ 83 (167)
T PRK14475 38 ALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLA 83 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555444433
No 404
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=76.74 E-value=15 Score=37.67 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=17.6
Q ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010571 444 RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 479 (507)
Q Consensus 444 ~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~ 479 (507)
+.++..++.+++.++.++...-+++.++.+|+++.+
T Consensus 348 ~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~ 383 (458)
T COG3206 348 EQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAE 383 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHH
Confidence 333444444445555554444455555555555554
No 405
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=76.71 E-value=30 Score=36.93 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=16.7
Q ss_pred HHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHH
Q 010571 420 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA 455 (507)
Q Consensus 420 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~ 455 (507)
+.+...++|+.|.++..++++....+...+.++++.
T Consensus 451 e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~ 486 (861)
T PF15254_consen 451 ELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELL 486 (861)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555555444444444333
No 406
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=76.62 E-value=66 Score=30.05 Aligned_cols=231 Identities=15% Similarity=0.110 Sum_probs=103.8
Q ss_pred CCCeEEeccCCCCC--CccccceEEEE--CCEEEEEc--CCCCCc-cCCc-eEEEECCC-CceeEeeeccccccCccccC
Q 010571 12 YDLWVTLPVSGARP--SPRYKHAAAVF--DQKLYIVG--GSRNGR-FLSD-VQVFDLRS-LAWSNLRLETELDADKTEDS 82 (507)
Q Consensus 12 ~~~W~~~~~~~~~p--~~r~~~~~~~~--~~~lyv~G--G~~~~~-~~~~-~~~~d~~t-~~W~~~~~~~~~~~~~~~~~ 82 (507)
...|.....-...+ ..+.+..+++. ++.|++|- +..... .... .+...... .+|.........
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~-------- 100 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPG-------- 100 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHH--------
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccc--------
Confidence 46698654311222 23344444443 78888875 222111 1111 23555553 489887543210
Q ss_pred CccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCC-CcEEEeecCCCCCCCcccceE-EEE-CCEEEEEcC
Q 010571 83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET-NLCGVMETSGKVPVARGGHSV-TLV-GSRLIIFGG 159 (507)
Q Consensus 83 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t-~~W~~~~~~g~~p~~r~~~~~-~~~-~~~l~~~GG 159 (507)
.....+.+.....+..-++.+++.. +.........+..+.... .+|....+.. +.......+ +.. ++.|+++--
T Consensus 101 ~~~~~~~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R 177 (275)
T PF13088_consen 101 WFGNFSGPGRGPPIQLPDGRLIAPY-YHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFR 177 (275)
T ss_dssp CCCSCEECSEEEEEEECTTEEEEEE-EEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEE
T ss_pred cccceeccceeeeeEecCCCEEEEE-eeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEE
Confidence 0000111122222444478888762 111111133344455554 4699887321 222333333 333 457777654
Q ss_pred cCCCCCccCcEEEEEcC-CCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECC-CCcEEeeeec
Q 010571 160 EDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIK 237 (507)
Q Consensus 160 ~~~~~~~~~~~~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~ 237 (507)
.. ... .....+..+ -.+|+.+... .+|.+.....++...++.++++...... ..+-...+... ..+|..+...
T Consensus 178 ~~-~~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~-r~~l~l~~S~D~g~tW~~~~~i 252 (275)
T PF13088_consen 178 TE-GND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDG-RSNLSLYVSEDGGKTWSRPKTI 252 (275)
T ss_dssp EC-SST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSST-SEEEEEEEECTTCEEEEEEEEE
T ss_pred cc-CCC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCC-CCceEEEEEeCCCCcCCccEEE
Confidence 32 111 223334444 3579987643 3455555555555667777777763211 11222223333 5679875433
Q ss_pred CCCCCCCcce-EEEEE-CCEEEE
Q 010571 238 GDLVTGRAGH-AGITI-DENWYI 258 (507)
Q Consensus 238 ~~~p~~r~~~-~~~~~-~~~l~v 258 (507)
.+-+...+++ +++.. ++.|+|
T Consensus 253 ~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 253 DDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp EEEE-CCEEEEEEEEEETTEEEE
T ss_pred eCCCCCcEECCeeEEeCCCcCCC
Confidence 2222223333 44444 457775
No 407
>PRK10780 periplasmic chaperone; Provisional
Probab=76.17 E-value=7.8 Score=33.46 Aligned_cols=15 Identities=0% Similarity=0.045 Sum_probs=5.9
Q ss_pred hHHHHHHhhccchhh
Q 010571 415 FREKIDEVNSTHSEL 429 (507)
Q Consensus 415 l~~~~~~~~~~~~~~ 429 (507)
.+.+++....+++..
T Consensus 55 ~q~el~~~~~elq~~ 69 (165)
T PRK10780 55 RASELQRMETDLQAK 69 (165)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444443333
No 408
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=76.09 E-value=43 Score=30.49 Aligned_cols=92 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHH----------------H
Q 010571 398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM----------------L 461 (507)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~----------------~ 461 (507)
+-.+...+.....-..-|.+.|..++.++.+.++.+.++...-..++.+..+++....+.+.+ +
T Consensus 12 ~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al 91 (225)
T COG1842 12 KANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREAL 91 (225)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 010571 462 ESSQTIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 462 ~~~~~~e~e~~~~~~~~~~~~~~~~~~~ 489 (507)
.+.+.+++....++++.+...+..+..+
T Consensus 92 ~~~~~le~~~~~~~~~~~~~~~~~~~l~ 119 (225)
T COG1842 92 EEKQSLEDLAKALEAELQQAEEQVEKLK 119 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 409
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=76.04 E-value=32 Score=34.75 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHH
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT 466 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~ 466 (507)
++..+..++++.......+...+++..+|-.+|..+++++.....|.++....++.-+..-.+++.++.|++.+..+.-.
T Consensus 210 tN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~ 289 (596)
T KOG4360|consen 210 TNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQ 289 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhH
Q 010571 467 IENEVQILRQQK 478 (507)
Q Consensus 467 ~e~e~~~~~~~~ 478 (507)
...|-++-.+.+
T Consensus 290 ~~~EaeeELk~l 301 (596)
T KOG4360|consen 290 MLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHhh
No 410
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=75.99 E-value=43 Score=35.82 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=0.0
Q ss_pred ccchhhHHhhHHHHHHHHHhhH--------------------------HHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571 385 KDVRTDIDAIKEDKRVLELSLT--------------------------EVRTENSRFREKIDEVNSTHSELSKELSSVQG 438 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~--------------------------~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~ 438 (507)
..++.+-.+|.++.|++...+. -.+.+..+..+.++.+...++|+.|.++..++
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~ 469 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKE 469 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHHhh
Q 010571 439 QLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 439 ~~~~~~~~~~~~e~~~~e~~~~~~~~~-~~e~e~~~~~~~~~~~~~~~~~~~ 489 (507)
++....+...+.++++.+.+++-..+- .+.-|++++....+.+.=-++..+
T Consensus 470 Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~se 521 (861)
T PF15254_consen 470 ENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASE 521 (861)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
No 411
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=75.99 E-value=1.6e+02 Score=34.03 Aligned_cols=259 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred cceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCc-------------cceee
Q 010571 30 KHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM-------------SDHCM 96 (507)
Q Consensus 30 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r-------------~~~~~ 96 (507)
+.++...++.|||. +...+.+.++|+....-..+...+.. +. .+.++
T Consensus 572 gvavd~~~g~lyVa-----Ds~n~rI~v~d~~G~~i~~ig~~g~~---------------G~~dG~~~~a~f~~P~GIav 631 (1057)
T PLN02919 572 KLAIDLLNNRLFIS-----DSNHNRIVVTDLDGNFIVQIGSTGEE---------------GLRDGSFEDATFNRPQGLAY 631 (1057)
T ss_pred eEEEECCCCeEEEE-----ECCCCeEEEEeCCCCEEEEEccCCCc---------------CCCCCchhccccCCCcEEEE
Q ss_pred EEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCC--------------CCCcccceEEEECCEEEEEcCcCC
Q 010571 97 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV--------------PVARGGHSVTLVGSRLIIFGGEDR 162 (507)
Q Consensus 97 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~--------------p~~r~~~~~~~~~~~l~~~GG~~~ 162 (507)
..-++.|||.-..+.. +.++|+.++.=+.+...|.. ...-.+.+....++.+|+....
T Consensus 632 d~~gn~LYVaDt~n~~------Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-- 703 (1057)
T PLN02919 632 NAKKNLLYVADTENHA------LREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-- 703 (1057)
T ss_pred eCCCCEEEEEeCCCce------EEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC--
Q ss_pred CCCccCcEEEEEcCCCcEEEeecCCCCCCC----------CCCceEEEEcCcE-EEEEeCCCCCcCCCcEEEEECCCCcE
Q 010571 163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAP----------RYDHSAALHANRY-LIVFGGCSHSIFFNDLHVLDLQTNEW 231 (507)
Q Consensus 163 ~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~----------r~~~~~~~~~~~~-l~i~GG~~~~~~~~~i~~~d~~~~~W 231 (507)
.+.|++||+.++........|..... ..-+.++...++. |||....+ +.|.+||+.++..
T Consensus 704 ----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-----~~Irv~D~~tg~~ 774 (1057)
T PLN02919 704 ----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-----SSIRALDLKTGGS 774 (1057)
T ss_pred ----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-----CeEEEEECCCCcE
Q ss_pred EeeeecCCCCCCCc----------------ceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCC---
Q 010571 232 SQPEIKGDLVTGRA----------------GHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR--- 290 (507)
Q Consensus 232 ~~~~~~~~~p~~r~----------------~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~--- 290 (507)
..+........... ....+.+ ++.+||....++. +.+||+.+.....+......
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r-----IrviD~~tg~v~tiaG~G~~G~~ 849 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK-----IKKLDPATKRVTTLAGTGKAGFK 849 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-----EEEEECCCCeEEEEeccCCcCCC
Q ss_pred --CCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCC
Q 010571 291 --NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 334 (507)
Q Consensus 291 --~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~ 334 (507)
......-.....+.++.+..|||.-..+ +.|.++|+.+..
T Consensus 850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~N----n~Irvid~~~~~ 891 (1057)
T PLN02919 850 DGKALKAQLSEPAGLALGENGRLFVADTNN----SLIRYLDLNKGE 891 (1057)
T ss_pred CCcccccccCCceEEEEeCCCCEEEEECCC----CEEEEEECCCCc
No 412
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=75.97 E-value=52 Score=28.52 Aligned_cols=106 Identities=25% Similarity=0.402 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHH----HHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS----SVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~----~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
+...|..|..++..-+..+.....+....+.-++....+.+....+.. ++..++...+.+|.-+|.++.-+++-++
T Consensus 9 LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv~ 88 (178)
T PF14073_consen 9 LQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMVE 88 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHH-----------HHHHHH-------HHHHHhHHHHHHHHHHhhccc
Q 010571 463 SSQ-----------TIENEV-------QILRQQKSAFEQEMERATSVQ 492 (507)
Q Consensus 463 ~~~-----------~~e~e~-------~~~~~~~~~~~~~~~~~~~~~ 492 (507)
..+ .++++. +-..+.++.||++.-.+.+.|
T Consensus 89 ~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q 136 (178)
T PF14073_consen 89 SAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQ 136 (178)
T ss_pred HHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
No 413
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=75.97 E-value=27 Score=41.36 Aligned_cols=108 Identities=19% Similarity=0.318 Sum_probs=0.0
Q ss_pred ccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHh--------HHHHHhhHhhhhhhhhhHHHHHHH
Q 010571 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE--------LSSVQGQLVAERSRCFKLEAQIAE 456 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e--------~~~~~~~~~~~~~~~~~~e~~~~e 456 (507)
..+..++.-|+.....++..+.....+...|+......+...+++... +.....+...+++.+...+..+++
T Consensus 1253 ~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~e 1332 (1822)
T KOG4674|consen 1253 EKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAE 1332 (1822)
T ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHHhhccc
Q 010571 457 LQKMLESSQ-TIENEVQILRQQKSAFEQEMERATSVQ 492 (507)
Q Consensus 457 ~~~~~~~~~-~~e~e~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
+.+++...+ ++.+.+..+..+++.+.++++++.+..
T Consensus 1333 l~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~ 1369 (1822)
T KOG4674|consen 1333 LKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLK 1369 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 414
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=75.88 E-value=17 Score=31.58 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHH--HHHHHHHHhHHHHHHHHHHhhcccccC
Q 010571 429 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE--NEVQILRQQKSAFEQEMERATSVQTQG 495 (507)
Q Consensus 429 ~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e--~e~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
....++.++.+.+...+++.++++.+..+.-+.-.-|-|+ +|++++.+++++||+-+.+.+......
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
No 415
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=75.76 E-value=25 Score=29.96 Aligned_cols=92 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred HhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHH-HhHHHHHHHHHHHHHhHHHH
Q 010571 403 LSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML-ESSQTIENEVQILRQQKSAF 481 (507)
Q Consensus 403 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~-~~~~~~e~e~~~~~~~~~~~ 481 (507)
+.|.....+......++..++.+++.+..+.+..+......+.++.+++.......+.+ .+..+++.+..+++.....+
T Consensus 36 E~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 36 ELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHhhccccc
Q 010571 482 EQEMERATSVQTQ 494 (507)
Q Consensus 482 ~~~~~~~~~~~~~ 494 (507)
.++.....+.+.+
T Consensus 116 ~~q~~rlee~e~~ 128 (158)
T PF09744_consen 116 SDQSSRLEEREAE 128 (158)
T ss_pred hhhccccchhHHH
No 416
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=75.66 E-value=88 Score=31.00 Aligned_cols=288 Identities=12% Similarity=0.018 Sum_probs=0.0
Q ss_pred eEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCcc
Q 010571 6 WHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85 (507)
Q Consensus 6 ~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~ 85 (507)
|.+|+.+..=++|+. .......+..++.-++.+|.+-. ...+...|+.|..=+.+=..+.
T Consensus 63 y~lDL~t~~i~QLTd--g~g~~~~g~~~s~~~~~~~Yv~~------~~~l~~vdL~T~e~~~vy~~p~------------ 122 (386)
T PF14583_consen 63 YLLDLATGEITQLTD--GPGDNTFGGFLSPDDRALYYVKN------GRSLRRVDLDTLEERVVYEVPD------------ 122 (386)
T ss_dssp EEEETTT-EEEE-----SS-B-TTT-EE-TTSSEEEEEET------TTEEEEEETTT--EEEEEE--T------------
T ss_pred EEEEcccCEEEECcc--CCCCCccceEEecCCCeEEEEEC------CCeEEEEECCcCcEEEEEECCc------------
Q ss_pred CCCCCccceeeEEECCEEEEEccc------------------CCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceE
Q 010571 86 EVLPPMSDHCMVKWGTKLLILGGH------------------YKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSV 147 (507)
Q Consensus 86 ~~p~~r~~~~~~~~~~~iyv~GG~------------------~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~ 147 (507)
.-.++...+++..--.++|. .-.......+...|+.|+..+.+- .-..=....-.
T Consensus 123 ----~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~---~~~~wlgH~~f 195 (386)
T PF14583_consen 123 ----DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF---EDTDWLGHVQF 195 (386)
T ss_dssp ----TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE---EESS-EEEEEE
T ss_pred ----ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE---ecCccccCccc
Q ss_pred EEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECC
Q 010571 148 TLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ 227 (507)
Q Consensus 148 ~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~ 227 (507)
.-.+..+++|---..-......||..|........+.. ..+....+|-.-...+..|+..+...+ ..-.-+..||+.
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~ 272 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR--RMEGESVGHEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPD 272 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEEEEEETT-T--EEEEEE-TT
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec--CCCCcccccccccCCCCEEEEEeecCC-CCceEEEeeCCC
Q ss_pred CCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcc-----------eEEEEEcCcCeeEEeccC---CCCCCC
Q 010571 228 TNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQ-----------ETIVLNMTKLAWSILTSV---KGRNPL 293 (507)
Q Consensus 228 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~-----------d~~~~d~~~~~W~~~~~~---~~~~p~ 293 (507)
+..=+.+ ++.|++.|-....++.+++--|.+...... -++++++....-..+..- ....-.
T Consensus 273 t~~~~~~-----~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~ 347 (386)
T PF14583_consen 273 TGERRRL-----MEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDG 347 (386)
T ss_dssp T--EEEE-----EEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTT
T ss_pred CCCceEE-----EeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecC
Q ss_pred CCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEEC
Q 010571 294 ASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL 330 (507)
Q Consensus 294 ~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~ 330 (507)
.+..........+++.+|+-.-...+ ...||.-++
T Consensus 348 ~~q~~hPhp~FSPDgk~VlF~Sd~~G--~~~vY~v~i 382 (386)
T PF14583_consen 348 DRQVTHPHPSFSPDGKWVLFRSDMEG--PPAVYLVEI 382 (386)
T ss_dssp BSSTT----EE-TTSSEEEEEE-TTS--S-EEEEEE-
T ss_pred CCccCCCCCccCCCCCEEEEECCCCC--CccEEEEeC
No 417
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=75.65 E-value=15 Score=31.52 Aligned_cols=69 Identities=28% Similarity=0.365 Sum_probs=0.0
Q ss_pred hhHHhHHHHHhhHhhh-hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCC
Q 010571 428 ELSKELSSVQGQLVAE-RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGS 496 (507)
Q Consensus 428 ~~~~e~~~~~~~~~~~-~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (507)
+..+|+......+... ..-..+++.++.++.++++.+++++.+...++.+-..++.+++.....=.+++
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~yL~~~ 171 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQYLQKS 171 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
No 418
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=75.52 E-value=9.9 Score=28.44 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-------HHHHHHHHHHHhHHHHHHHHHHhh
Q 010571 436 VQGQLVAERSRCFKLEAQIAELQKMLESSQ-------TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 436 ~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-------~~e~e~~~~~~~~~~~~~~~~~~~ 489 (507)
+..|++..++++..-...+.....+|...+ .+++|...+..++...|+++..++
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
No 419
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=75.49 E-value=31 Score=36.00 Aligned_cols=106 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred ccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464 (507)
Q Consensus 385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~ 464 (507)
.....+...|+.....++..+.....+...+++...........++.++...+.+++..+....+......++...|+++
T Consensus 298 ~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql 377 (522)
T PF05701_consen 298 EKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQL 377 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Q ss_pred H----HHHHHHHHHHHhHHHHHHHHHHhhc
Q 010571 465 Q----TIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 465 ~----~~e~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
. ...++....+.+...+..+.++.+.
T Consensus 378 ~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 378 SSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 420
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=75.35 E-value=8.1 Score=35.96 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHH--------------HHHHHHHHHHHhHHHHHH
Q 010571 404 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE--------------AQIAELQKMLESSQTIEN 469 (507)
Q Consensus 404 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e--------------~~~~e~~~~~~~~~~~e~ 469 (507)
.+...++....|++..+.+..++..++.++.+.+.+|+.......... .--..+++++++.++||+
T Consensus 174 P~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~ 253 (259)
T PF08657_consen 174 PLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELER 253 (259)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 010571 470 EVQILR 475 (507)
Q Consensus 470 e~~~~~ 475 (507)
++.+++
T Consensus 254 k~~~Lq 259 (259)
T PF08657_consen 254 KKRELQ 259 (259)
T ss_pred HHHhcC
No 421
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=75.31 E-value=0.92 Score=46.01 Aligned_cols=119 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCCcccccchhhHHhhHHHHHHHHHhhHHHHh----hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh-hhhhhhHHHH
Q 010571 379 GNDLSEKDVRTDIDAIKEDKRVLELSLTEVRT----ENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-RSRCFKLEAQ 453 (507)
Q Consensus 379 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~e~~ 453 (507)
........+..+|..||++.+....+|++-.. +.+++.+.+.+++..+++-|+.|+..+.+.+.. |.++..+-..
T Consensus 366 ~~~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~v 445 (495)
T PF12004_consen 366 ESMKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAV 445 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhh
Q ss_pred HHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhcccccCCC
Q 010571 454 IAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQTQGSG 497 (507)
Q Consensus 454 ~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (507)
-.|++++..+++ ..++=++...+++..|+..-..+-....|.+.
T Consensus 446 EeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~ 493 (495)
T PF12004_consen 446 EEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKE 493 (495)
T ss_dssp ------------------------------------------------
T ss_pred hhhhhhhHHHHhcccccchHHHHHhhhhcccccccccccccccccccc
No 422
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=75.25 E-value=6.5 Score=39.06 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred hhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHH
Q 010571 388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTI 467 (507)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~ 467 (507)
+.+.+.||+-+|.+..+..+...+..+. +-++.++........++++++++++++|.+-+-+-++|++.|.+
T Consensus 244 KaEEriLKrvRRKIrNK~SAQESRrkKk--------eYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 244 KAEERILKRVRRKIRNKRSAQESRRKKK--------EYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHh--------hHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Q ss_pred HHH
Q 010571 468 ENE 470 (507)
Q Consensus 468 e~e 470 (507)
..+
T Consensus 316 v~q 318 (472)
T KOG0709|consen 316 VIQ 318 (472)
T ss_pred Hhh
No 423
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=75.13 E-value=37 Score=37.06 Aligned_cols=108 Identities=12% Similarity=0.227 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ- 465 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~- 465 (507)
+..++..|..+.......+.+.......++..+..+..++.++...+......+..++.+++.++..+.+...++....
T Consensus 341 Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~ 420 (775)
T PF10174_consen 341 LQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE 420 (775)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------HHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010571 466 ------------TIENEVQILRQQKSAFEQEMERATSVQTQ 494 (507)
Q Consensus 466 ------------~~e~e~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
.+...+++...+++.+-..+++.+...++
T Consensus 421 Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~ 461 (775)
T PF10174_consen 421 RLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEK 461 (775)
T ss_pred HHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 424
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.90 E-value=49 Score=33.79 Aligned_cols=104 Identities=10% Similarity=0.115 Sum_probs=0.0
Q ss_pred hhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHH-------
Q 010571 388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM------- 460 (507)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~------- 460 (507)
.+|+..-..-+.+++.........+++.-+.|+..+++.+..++-.....+..++..++-+.+++..+.+.+.
T Consensus 573 EqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~ 652 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV 652 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc
Q ss_pred -HHhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010571 461 -LESSQTIENEVQILRQQKSAFEQEMERATSV 491 (507)
Q Consensus 461 -~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~ 491 (507)
...+.++.+|++.+-.+.+.|...+|-++.+
T Consensus 653 l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~ 684 (741)
T KOG4460|consen 653 LSDAERDFKKELQLIPDQLRHLGNAIETVTMK 684 (741)
T ss_pred chhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 425
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=74.88 E-value=48 Score=29.11 Aligned_cols=92 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 010571 398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQ 477 (507)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~ 477 (507)
++.+-........-..+|-+.+-....+.-...-|.-.+-+-+....+..+++=....|.++..+..+.|+++.+.-.+.
T Consensus 10 rerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~ 89 (272)
T KOG4552|consen 10 RERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEV 89 (272)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHhh
Q 010571 478 KSAFEQEMERAT 489 (507)
Q Consensus 478 ~~~~~~~~~~~~ 489 (507)
+++|++.+.+++
T Consensus 90 IQqLqk~LK~aE 101 (272)
T KOG4552|consen 90 IQQLQKNLKSAE 101 (272)
T ss_pred HHHHHHHHHHHH
No 426
>PRK02119 hypothetical protein; Provisional
Probab=74.86 E-value=18 Score=26.26 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhc
Q 010571 438 GQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 438 ~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
.+.....+++.++|..++-.+.-+.++. +.++++..+++++..+.+.+.+.+.
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 427
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.82 E-value=27 Score=28.46 Aligned_cols=76 Identities=13% Similarity=0.265 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+.+.++++.+.....+..+.. ....+-.++++..+-.+..+++..++++.+...+..+..++..+..++-++..++
T Consensus 48 v~kql~~vs~~l~~tKkhLsq---RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 48 VSKQLEQVSESLSSTKKHLSQ---RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
No 428
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=74.79 E-value=33 Score=38.59 Aligned_cols=106 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHH
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT 466 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~ 466 (507)
+..+...+..+...+...+.....+...+.+.+.++++++..++..+.....++++.++.....++.+.+.++. ....+
T Consensus 593 le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~-~~e~~ 671 (1317)
T KOG0612|consen 593 LEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKE-ALEIK 671 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010571 467 IENEVQILRQQKSAFEQEMERATSVQTQ 494 (507)
Q Consensus 467 ~e~e~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
++.+++-++++++++..|.... .++.+
T Consensus 672 ~e~~lk~~q~~~eq~~~E~~~~-~L~~~ 698 (1317)
T KOG0612|consen 672 LERKLKMLQNELEQENAEHHRL-RLQDK 698 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhH
No 429
>PRK01156 chromosome segregation protein; Provisional
Probab=74.78 E-value=34 Score=38.58 Aligned_cols=104 Identities=9% Similarity=0.101 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHH---hhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHh
Q 010571 387 VRTDIDAIKEDKRVLEL---SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 463 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~ 463 (507)
+......++.....++. .+.....+...++..+...+.++.+..+++..+..+++..+....+++..+..++.+++.
T Consensus 164 ~~~~~~~~~~~~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~ 243 (895)
T PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 010571 464 SQTIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 464 ~~~~e~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
...++.+...+.+++..++..+.+.+.
T Consensus 244 l~~~~~~~~~~e~~i~ele~~l~el~~ 270 (895)
T PRK01156 244 LSSLEDMKNRYESEIKTAESDLSMELE 270 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 430
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.73 E-value=58 Score=28.45 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred ccccchhhHHhhHHHHHHHHHhhHHHH-hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh-----hhhhhhHHHHHHH
Q 010571 383 SEKDVRTDIDAIKEDKRVLELSLTEVR-TENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-----RSRCFKLEAQIAE 456 (507)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~-----~~~~~~~e~~~~e 456 (507)
+...+....+.++..-.+++..+.... .+.+.++...+.++.+++.++.++.+.-..+... ..+-.+.......
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~ 124 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAK 124 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HHHHHHhHH-HHHHHHHHHHHhHHHHHHHH
Q 010571 457 LQKMLESSQ-TIENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 457 ~~~~~~~~~-~~e~e~~~~~~~~~~~~~~~ 485 (507)
.+.++++.. ++..++..++-++++..-+.
T Consensus 125 ~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 125 QELKIQELNNKIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 431
>PRK11519 tyrosine kinase; Provisional
Probab=74.43 E-value=31 Score=37.75 Aligned_cols=110 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010571 394 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQI 473 (507)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~ 473 (507)
+..+.+.....+.....+..+++.++.++.....+..-..+..+.+...++++..+++.++.++-+..++..+|+++.+.
T Consensus 302 ~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~ 381 (719)
T PRK11519 302 LPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVES 381 (719)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHhhcccccCCCceeeeec
Q 010571 474 LRQQKSAFEQEMERATSVQTQGSGGVWRWIA 504 (507)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (507)
.++--+.+.+.++|.+ .++....+.|+=|.
T Consensus 382 ~~~lY~~lL~r~~e~~-i~~a~~~~~~rIid 411 (719)
T PRK11519 382 GQQVYMQLLNKQQELK-ITEASTVGDVRIVD 411 (719)
T ss_pred HHHHHHHHHHHHHHHh-HHhcCCCCCeEEEe
No 432
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=74.33 E-value=13 Score=37.98 Aligned_cols=69 Identities=23% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHH----------HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010571 419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA----------QIAELQKMLESSQTIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 419 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~----------~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
...+.++++++++++++.+.++++.++.+.+++. .....++-.+...++.++++++.+++..++++++.
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 433
>PHA01750 hypothetical protein
Probab=74.30 E-value=11 Score=26.16 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=0.0
Q ss_pred hhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHh
Q 010571 414 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 463 (507)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~ 463 (507)
++++.+...-+++ ..+|+.-.+.|++..+.+..++++++.|+++++.+
T Consensus 27 KIKq~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 27 KIKQALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
No 434
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=74.22 E-value=12 Score=36.28 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred CcccccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHH
Q 010571 381 DLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460 (507)
Q Consensus 381 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~ 460 (507)
+..+....+.++.||-+=-.+.+.+..-+++-++|+..-..+++.-....+..+..+-.--.++....-+|+++.-++++
T Consensus 131 Kekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~q 210 (558)
T PF15358_consen 131 KEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQ 210 (558)
T ss_pred HHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Q ss_pred HHhHHHH--HHHHHHHHHhHHH
Q 010571 461 LESSQTI--ENEVQILRQQKSA 480 (507)
Q Consensus 461 ~~~~~~~--e~e~~~~~~~~~~ 480 (507)
+|.++.. +.+.+++.|++++
T Consensus 211 LqdE~prrqe~e~qELeqklea 232 (558)
T PF15358_consen 211 LQDETPRRQEAEWQELEQKLEA 232 (558)
T ss_pred hcccCcchhhhhHHHHHHHHhh
No 435
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=74.11 E-value=21 Score=34.35 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHH-----HHHhHHHHHHHHHHH
Q 010571 400 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK-----MLESSQTIENEVQIL 474 (507)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~-----~~~~~~~~e~e~~~~ 474 (507)
+.++.-.+..++-++|++.-......+++..+-...-...+..+++++.++...++..+. +.+..+++++++.+.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r 80 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKER 80 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHH
Q 010571 475 RQQKSAFEQEM 485 (507)
Q Consensus 475 ~~~~~~~~~~~ 485 (507)
+......|..+
T Consensus 81 ~~~l~DmEa~L 91 (330)
T PF07851_consen 81 RCQLFDMEAFL 91 (330)
T ss_pred HhhHHHHHhhC
No 436
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=73.99 E-value=24 Score=29.03 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHH-HHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHH
Q 010571 416 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE-AQIAELQKMLESSQ-TIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 416 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e-~~~~e~~~~~~~~~-~~e~e~~~~~~~~~~~~~ 483 (507)
.+.++.++..+...+.|+++++-+..+......+.. +.++.++++..... ++.....++..++++++.
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~ 88 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQK 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 437
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=73.99 E-value=4.9 Score=34.42 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
.+.++..+.+..+...-|+.+| .|.+.++.+.|.+++++.+|++++ ..+++++...
T Consensus 2 LeD~EsklN~AIERnalLE~EL-----------dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~ 57 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-----------DEKENLREEVQRLKDELRDLKQEL-IVQEKLRKAN 57 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHCH-------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhh
No 438
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=73.86 E-value=53 Score=27.64 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHH---HHHhhHhhh-hhhh-hhHHHHHHHHHHHH
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS---SVQGQLVAE-RSRC-FKLEAQIAELQKML 461 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~---~~~~~~~~~-~~~~-~~~e~~~~e~~~~~ 461 (507)
+.++...+......++..+.............+..+...+....+..+ -+..+.++. +++. ..+|..+....+.+
T Consensus 27 L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~~~~I 106 (146)
T PF08702_consen 27 LDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQPSNI 106 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q ss_pred HhHH----HHHHHHHHHHHhHHHHHH
Q 010571 462 ESSQ----TIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 462 ~~~~----~~e~e~~~~~~~~~~~~~ 483 (507)
+.++ ...+++++|.+...++++
T Consensus 107 ~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 107 RVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 439
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=73.80 E-value=33 Score=28.84 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-----------------HHHHHHHHH
Q 010571 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----------------TIENEVQIL 474 (507)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-----------------~~e~e~~~~ 474 (507)
...|+.-++-.++..+....++...+.+++..+.++..++....+..+++.... .|...+.+.
T Consensus 4 ~~rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q 83 (147)
T PRK05689 4 ASALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQ 83 (147)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHhhc
Q 010571 475 RQQKSAFEQEMERATS 490 (507)
Q Consensus 475 ~~~~~~~~~~~~~~~~ 490 (507)
.+.+..++.+++..+.
T Consensus 84 ~~~v~~~~~~ve~~r~ 99 (147)
T PRK05689 84 RQQLTQWTQKVDNARK 99 (147)
T ss_pred HHHHHHHHHHHHHHHH
No 440
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=73.49 E-value=23 Score=40.32 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=0.0
Q ss_pred hhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHH
Q 010571 404 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 404 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~ 483 (507)
...+.+.+..++...+..+..+++...++.++...++..++..--.+....+.+.+.++..++++.++..+++.+..+..
T Consensus 820 t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s 899 (1294)
T KOG0962|consen 820 TVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDS 899 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcc
Q 010571 484 EMERATSV 491 (507)
Q Consensus 484 ~~~~~~~~ 491 (507)
.+.++.+.
T Consensus 900 ~~~e~~~~ 907 (1294)
T KOG0962|consen 900 KVKELLER 907 (1294)
T ss_pred HHHhhHhh
No 441
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=73.40 E-value=1.4e+02 Score=32.14 Aligned_cols=226 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred eEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCC
Q 010571 32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK 111 (507)
Q Consensus 32 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 111 (507)
+.++..+.+.++.| .-..+-+++..|.+-...-+.+.. +++..+.+.-||+-|...
T Consensus 378 sl~vS~d~~~~~Sg-----a~~SikiWn~~t~kciRTi~~~y~-------------------l~~~Fvpgd~~Iv~G~k~ 433 (888)
T KOG0306|consen 378 SLCVSSDSILLASG-----AGESIKIWNRDTLKCIRTITCGYI-------------------LASKFVPGDRYIVLGTKN 433 (888)
T ss_pred EEEeecCceeeeec-----CCCcEEEEEccCcceeEEeccccE-------------------EEEEecCCCceEEEeccC
Q ss_pred CCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEE--cCCCcEEEeecCCCC
Q 010571 112 KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD--LETMTWDAVEVTQTP 189 (507)
Q Consensus 112 ~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d--~~t~~W~~~~~~g~~ 189 (507)
.. +.+||..+..--... ....+....-...-++.-++.||.+..-.+..-..+.+ -...+--.+..+..+
T Consensus 434 Ge-----l~vfdlaS~~l~Eti---~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL 505 (888)
T KOG0306|consen 434 GE-----LQVFDLASASLVETI---RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL 505 (888)
T ss_pred Cc-----eEEEEeehhhhhhhh---hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE
Q ss_pred CCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE------CCEEEEEeccC
Q 010571 190 PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI------DENWYIVGGGD 263 (507)
Q Consensus 190 p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~------~~~l~v~GG~~ 263 (507)
-.+-.--++.+.+|++++.+|=.+ |.+.+|-+.+..+.- ..++|..-++ +.++++.|+.+
T Consensus 506 el~ddvL~v~~Spdgk~LaVsLLd-----nTVkVyflDtlKFfl---------sLYGHkLPV~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 506 ELEDDVLCVSVSPDGKLLAVSLLD-----NTVKVYFLDTLKFFL---------SLYGHKLPVLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred eccccEEEEEEcCCCcEEEEEecc-----CeEEEEEecceeeee---------eecccccceeEEeccCCcCeEEeccCC
Q ss_pred CCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEc
Q 010571 264 NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFG 315 (507)
Q Consensus 264 ~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~G 315 (507)
.+- .+|=+|.-.-.=+-.+.- ..-++.-.++....++..|
T Consensus 572 KnV---KiWGLdFGDCHKS~fAHd---------DSvm~V~F~P~~~~FFt~g 611 (888)
T KOG0306|consen 572 KNV---KIWGLDFGDCHKSFFAHD---------DSVMSVQFLPKTHLFFTCG 611 (888)
T ss_pred Cce---EEeccccchhhhhhhccc---------CceeEEEEcccceeEEEec
No 442
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.36 E-value=14 Score=26.48 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010571 442 AERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 442 ~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~~~~ 489 (507)
..++++.++|..++-.+.-+.++. +.++++..+++++..+.+.+.+.+
T Consensus 1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 443
>PRK09343 prefoldin subunit beta; Provisional
Probab=73.21 E-value=48 Score=26.86 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh----------------------hhhhhhHHHHHHHHH
Q 010571 401 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE----------------------RSRCFKLEAQIAELQ 458 (507)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~----------------------~~~~~~~e~~~~e~~ 458 (507)
+...++....+...++++++.+..+...++.++.+.+.-+..+ .+-..+++..+.-++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE 84 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010571 459 KMLESSQTIENEVQILRQQKSAFEQEMERA 488 (507)
Q Consensus 459 ~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~ 488 (507)
.....++++.+-+++++..++++++++
T Consensus 85 ---~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 85 ---LRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 444
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=73.11 E-value=31 Score=36.74 Aligned_cols=99 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred ccccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571 383 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
+...+..++..+++..+-..........+...+++.++...+...+..+.+...+.++++-..+..+++.++++...++.
T Consensus 518 ~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele 597 (698)
T KOG0978|consen 518 SVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELE 597 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHH----HHHHHHHHHHHhHHHH
Q 010571 463 SSQ----TIENEVQILRQQKSAF 481 (507)
Q Consensus 463 ~~~----~~e~e~~~~~~~~~~~ 481 (507)
... .+|.|.+.+...++..
T Consensus 598 ~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 598 IEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 445
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.08 E-value=48 Score=30.98 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-HHHH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIEN 469 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~~e~ 469 (507)
++.....+.+....++. ..+++++.-...-.+.+...++.+.. +..+...+.+.+++.+.++.... +|+.
T Consensus 321 qet~eaKr~e~~~e~qr---kEee~rqmFvqrvkekE~elke~Eke------l~~kf~~lkr~h~eEk~kle~~rr~Lee 391 (406)
T KOG3859|consen 321 QETYEAKRNEFLGELQR---KEEEMRQMFVQRVKEKEAELKEAEKE------LHEKFDRLKRLHQEEKKKLEEKRKQLEE 391 (406)
T ss_pred HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHH
Q 010571 470 EVQILRQQKSAFE 482 (507)
Q Consensus 470 e~~~~~~~~~~~~ 482 (507)
+...+++++.+.+
T Consensus 392 e~~~f~~rk~~~~ 404 (406)
T KOG3859|consen 392 EVNAFQRRKTAAE 404 (406)
T ss_pred HHHHHHHHHHHHh
No 446
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=73.06 E-value=13 Score=39.59 Aligned_cols=88 Identities=18% Similarity=0.092 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHH
Q 010571 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
...+++.|...++.-++..++-++.....++++++..+.|.+-+|.+++-++.. +..+..=.++-.+|..++.+.+
T Consensus 216 v~~~qe~La~~qe~eE~qkreeEE~~r~eeEEer~~ee~E~~~eEak~kkKekekek~er~KaeGklLTakQK~~~a~ae 295 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKREEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKEKKERKKAEGKLLTAKQKEEAALAE 295 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHhhHHHHHHHH
Q ss_pred hhcccccCCCce
Q 010571 488 ATSVQTQGSGGV 499 (507)
Q Consensus 488 ~~~~~~~~~~~~ 499 (507)
++.+|...++|+
T Consensus 296 a~l~~ll~sg~~ 307 (1064)
T KOG1144|consen 296 AFLKQLLASGGG 307 (1064)
T ss_pred HHHHHHHhcCCC
No 447
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=73.00 E-value=22 Score=39.23 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred hhHHHHhhhhhhHHHHHH-hhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Q 010571 404 SLTEVRTENSRFREKIDE-VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFE 482 (507)
Q Consensus 404 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~ 482 (507)
.....+.+.+.+++++++ +.+-....+.+++..+.....++.++.+++.++.++-+...+...|+++.+..++.-+.+.
T Consensus 317 ~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 317 RVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhcccccCCCce
Q 010571 483 QEMERATSVQTQGSGGV 499 (507)
Q Consensus 483 ~~~~~~~~~~~~~~~~~ 499 (507)
+.+++.+..+.......
T Consensus 397 ~r~~e~~~~~~~~~~~~ 413 (754)
T TIGR01005 397 TNYRQAASRQNYVPVDA 413 (754)
T ss_pred HHHHHHHHhhcCCCCCc
No 448
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=72.97 E-value=29 Score=31.88 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHH--HHHHhHHHHHH
Q 010571 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ--KMLESSQTIEN 469 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~--~~~~~~~~~e~ 469 (507)
+.+....+-.+..--..++-..+-+++++.+.++-...+++.++.+...++++...++++..-..++ +-++-..+...
T Consensus 309 qe~ddkdk~~ed~e~kkrqlerqekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekie 388 (445)
T KOG2891|consen 309 QEFDDKDKHLEDAEIKKRQLERQEKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIE 388 (445)
T ss_pred hhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HHHHHHHhHH--HHHHHHHHhhccccc
Q 010571 470 EVQILRQQKS--AFEQEMERATSVQTQ 494 (507)
Q Consensus 470 e~~~~~~~~~--~~~~~~~~~~~~~~~ 494 (507)
..++-+++++ .|..+.+...+++++
T Consensus 389 areerrkqkeeeklk~e~qkikeleek 415 (445)
T KOG2891|consen 389 AREERRKQKEEEKLKAEEQKIKELEEK 415 (445)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHH
No 449
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.82 E-value=39 Score=32.25 Aligned_cols=101 Identities=9% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCCcccccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHH
Q 010571 378 IGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL 457 (507)
Q Consensus 378 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~ 457 (507)
..+..+......|+++.......+-... +.++.+.+|+..++++...-.+-.....+.+..-++..+.|++..+.
T Consensus 86 e~dF~~l~~yNdYLE~vEdii~nL~~~~-----d~~~te~~l~~y~~~n~~~I~~n~~~~~~e~~~~~~~~~~E~~~~~~ 160 (309)
T TIGR00570 86 EEDFPSLREYNDYLEEVEDIVYNLTNNI-----DLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQ 160 (309)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHhhcCC-----cHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHH
Q 010571 458 QKMLESSQTIENEVQILRQQKSAFEQ 483 (507)
Q Consensus 458 ~~~~~~~~~~e~e~~~~~~~~~~~~~ 483 (507)
+.++....+.+....+.+.+.+-+++
T Consensus 161 rr~~~~~~e~ee~~~~~~~~~~~ld~ 186 (309)
T TIGR00570 161 RRLLLQKEEEEQQMNKRKNKQALLDE 186 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=72.82 E-value=42 Score=33.38 Aligned_cols=89 Identities=19% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-HHHHHHHHHHHhH
Q 010571 400 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQK 478 (507)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~~e~e~~~~~~~~ 478 (507)
.+.+.+.+.+.....|+..++.++.+ ..++++.+.+.+++++-+.+.+|+++-++.+-.|.+- .|.+++.-..++.
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~---~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQ---YQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred H-HHHHHHHHhhcc
Q 010571 479 S-AFEQEMERATSV 491 (507)
Q Consensus 479 ~-~~~~~~~~~~~~ 491 (507)
+ +..+-..+..+.
T Consensus 293 ~Yqs~eRaRdi~E~ 306 (395)
T PF10267_consen 293 AYQSYERARDIWEV 306 (395)
T ss_pred HHHHHHHHhHHHHH
No 451
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=72.77 E-value=76 Score=28.94 Aligned_cols=219 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred eEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE------CCEEEE
Q 010571 32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW------GTKLLI 105 (507)
Q Consensus 32 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~------~~~iyv 105 (507)
+..+.++.=|..|| .-..++++|..|++-.+ ...+|.+-+- ...+.+
T Consensus 65 ~~~s~Dnskf~s~G-----gDk~v~vwDV~TGkv~R----------------------r~rgH~aqVNtV~fNeesSVv~ 117 (307)
T KOG0316|consen 65 AALSSDNSKFASCG-----GDKAVQVWDVNTGKVDR----------------------RFRGHLAQVNTVRFNEESSVVA 117 (307)
T ss_pred ccccccccccccCC-----CCceEEEEEcccCeeee----------------------ecccccceeeEEEecCcceEEE
Q ss_pred EcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeec
Q 010571 106 LGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV 185 (507)
Q Consensus 106 ~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~ 185 (507)
-|+.+.. +..+|..+++.+++. .+-.++.+-+.+.+.+..++.|..++. +-.||+..++-..-..
T Consensus 118 SgsfD~s------~r~wDCRS~s~ePiQ---ildea~D~V~Si~v~~heIvaGS~DGt------vRtydiR~G~l~sDy~ 182 (307)
T KOG0316|consen 118 SGSFDSS------VRLWDCRSRSFEPIQ---ILDEAKDGVSSIDVAEHEIVAGSVDGT------VRTYDIRKGTLSSDYF 182 (307)
T ss_pred eccccce------eEEEEcccCCCCccc---hhhhhcCceeEEEecccEEEeeccCCc------EEEEEeecceeehhhc
Q ss_pred CCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC
Q 010571 186 TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN 265 (507)
Q Consensus 186 ~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 265 (507)
..+.. +.....++...++|-.+ ..+..+|-+++.--.. -.-....-+-.-++.....-.|++|....
T Consensus 183 g~pit------~vs~s~d~nc~La~~l~-----stlrLlDk~tGklL~s--YkGhkn~eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 183 GHPIT------SVSFSKDGNCSLASSLD-----STLRLLDKETGKLLKS--YKGHKNMEYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred CCcce------eEEecCCCCEEEEeecc-----ceeeecccchhHHHHH--hcccccceeeeeeeecccceeEEeccCCc
Q ss_pred CCcceEEEEEcCcCe-eEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcc
Q 010571 266 NGCQETIVLNMTKLA-WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG 316 (507)
Q Consensus 266 ~~~~d~~~~d~~~~~-W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG 316 (507)
-+|++|+...+ -++++...... .......+....+++.+|
T Consensus 250 ----~Vy~wdLvd~~~~sk~~~~~~v~-------v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 250 ----KVYFWDLVDETQISKLSVVSTVI-------VTDLSCHPTMDDFITATG 290 (307)
T ss_pred ----eEEEEEeccceeeeeeccCCcee-------EEeeecccCccceeEecC
No 452
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=72.56 E-value=39 Score=28.38 Aligned_cols=77 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-----------------HHHHHHHHHHH
Q 010571 414 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----------------TIENEVQILRQ 476 (507)
Q Consensus 414 ~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-----------------~~e~e~~~~~~ 476 (507)
.|+..++-.+...+....++......++..+.++..++....+..+++.... .|...+.+.++
T Consensus 6 rL~~vL~l~~~~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~ 85 (146)
T PRK07720 6 RLQKVLELKENEKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQL 85 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHhhc
Q 010571 477 QKSAFEQEMERATS 490 (507)
Q Consensus 477 ~~~~~~~~~~~~~~ 490 (507)
.+..++.++++.+.
T Consensus 86 ~v~~~~~~ve~~r~ 99 (146)
T PRK07720 86 LVMQAREQMNRKQQ 99 (146)
T ss_pred HHHHHHHHHHHHHH
No 453
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.50 E-value=68 Score=28.29 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHH-HHHhHH--
Q 010571 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK-MLESSQ-- 465 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~-~~~~~~-- 465 (507)
.+.-..+.-+.-+-..|....-...+-+.-++...++.++..+-..++..+.++-+.+...+..++.+.+. ++.+..
T Consensus 54 ~~y~ea~ri~Ka~L~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~ 133 (222)
T KOG3215|consen 54 KEYSEAKRIRKALLASLSQDEPSMLKTQRVIEMNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYS 133 (222)
T ss_pred hchhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred --------------------HHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010571 466 --------------------TIENEVQILRQQKSAFEQEMERATSVQTQ 494 (507)
Q Consensus 466 --------------------~~e~e~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
++.++++++......++.-++ .|..|.+
T Consensus 134 ~l~kvis~~p~RsEt~k~l~el~keleel~~~~~s~~~kle-lrRkqf~ 181 (222)
T KOG3215|consen 134 ALSKVISDCPARSETDKDLNELKKELEELDDLNNSTETKLE-LRRKQFK 181 (222)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhhhhHHHHH-HHhhcch
No 454
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=72.45 E-value=12 Score=35.09 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred hHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010571 415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQI 473 (507)
Q Consensus 415 l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~ 473 (507)
.+..+..+++..+...+.+-++..+++.++.++.+++-++++..-+++++++.++++-+
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~ 96 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYL 96 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
No 455
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=72.38 E-value=12 Score=29.66 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHH
Q 010571 407 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK 459 (507)
Q Consensus 407 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~ 459 (507)
..+....++.+++..+..+++++.+++.++-+++..++-+-+.+...+.+..+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 456
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=72.33 E-value=55 Score=27.59 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=0.0
Q ss_pred hhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH---HHHHHHHHHHHhHHH
Q 010571 404 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ---TIENEVQILRQQKSA 480 (507)
Q Consensus 404 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~---~~e~e~~~~~~~~~~ 480 (507)
...........+......+-+.+-..+.++...+.++.........++.+..++.++.+.+. ....-...++.....
T Consensus 28 ~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e 107 (150)
T PF07200_consen 28 QVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASE 107 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcc
Q 010571 481 FEQEMERATSV 491 (507)
Q Consensus 481 ~~~~~~~~~~~ 491 (507)
.+++.++..+.
T Consensus 108 ~eeeSe~lae~ 118 (150)
T PF07200_consen 108 AEEESEELAEE 118 (150)
T ss_dssp HHHHHHHHC-S
T ss_pred HHHHHHHHHHH
No 457
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=72.31 E-value=26 Score=29.90 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHhhccchhhHHhHHHHHhhHhhhhhhh-hhHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHH
Q 010571 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRC-FKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 417 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~e~~~~e~~~~~~~~~-~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
++++.+++.++..++.+.+++..+-.++.-. ..+=++-.+.-++||.+. .+.+|+++|..|++....+++|
T Consensus 105 ~Elq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 105 QELQQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 458
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.22 E-value=73 Score=28.53 Aligned_cols=200 Identities=16% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC-CCcccceEEEECCEEEEEcCcCCCC
Q 010571 86 EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGEDRSR 164 (507)
Q Consensus 86 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~l~~~GG~~~~~ 164 (507)
++-...+-......+++||.--|....+. +.++|+.+++=..-. .++ ....+-..+..++++|..--.+.-
T Consensus 41 phDs~sfTQGL~~~~g~i~esTG~yg~S~----ir~~~L~~gq~~~s~---~l~~~~~FgEGit~~gd~~y~LTw~egv- 112 (262)
T COG3823 41 PHDSTSFTQGLEYLDGHILESTGLYGFSK----IRVSDLTTGQEIFSE---KLAPDTVFGEGITKLGDYFYQLTWKEGV- 112 (262)
T ss_pred cCchhhhhcceeeeCCEEEEeccccccce----eEEEeccCceEEEEe---ecCCccccccceeeccceEEEEEeccce-
Q ss_pred CccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc-EEeeeecCCCCCC
Q 010571 165 KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTG 243 (507)
Q Consensus 165 ~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~ 243 (507)
.+.||..+ +...|..+.+-.+.+.+.-+.+ |++..|. ..+..-||++.. -..+.++.+-.+-
T Consensus 113 -----af~~d~~t-----~~~lg~~~y~GeGWgLt~d~~~-LimsdGs------atL~frdP~tfa~~~~v~VT~~g~pv 175 (262)
T COG3823 113 -----AFKYDADT-----LEELGRFSYEGEGWGLTSDDKN-LIMSDGS------ATLQFRDPKTFAELDTVQVTDDGVPV 175 (262)
T ss_pred -----eEEEChHH-----hhhhcccccCCcceeeecCCcc-eEeeCCc------eEEEecCHHHhhhcceEEEEECCeec
Q ss_pred CcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCe---eEEeccCCCCCCCCCCC--CceEEEEEcCceEEEEEc
Q 010571 244 RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA---WSILTSVKGRNPLASEG--LSVCSAIIEGEHHLVAFG 315 (507)
Q Consensus 244 r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~---W~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~l~v~G 315 (507)
+.---.-.+++.+| .+--..+.+.++++++++ |..+..+.........+ ..-..+..+..+.+|+.|
T Consensus 176 ~~LNELE~VdG~ly-----ANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 176 SKLNELEWVDGELY-----ANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccccceeeeccEEE-----EeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
No 459
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=72.09 E-value=14 Score=37.86 Aligned_cols=70 Identities=16% Similarity=0.285 Sum_probs=0.0
Q ss_pred chhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHH----------HHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccC
Q 010571 426 HSELSKELSSVQGQLVAERSRCFKLEAQIAELQK----------MLESSQTIENEVQILRQQKSAFEQEMERATSVQTQG 495 (507)
Q Consensus 426 ~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~----------~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
..++.++++.++.++++.++++.+++..+..+++ +.+..+++.+...++.++++++++++.++++.-++.
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 460
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=72.00 E-value=51 Score=27.64 Aligned_cols=98 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh--------------------------------------
Q 010571 402 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-------------------------------------- 443 (507)
Q Consensus 402 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~-------------------------------------- 443 (507)
...+.+...+...++.+++.+..++..+...+.+++.-++-+
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred ----hhhhhhHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHHhhcccccCCCce
Q 010571 444 ----RSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEMERATSVQTQGSGGV 499 (507)
Q Consensus 444 ----~~~~~~~e~~~~e~~~~~~~~~-~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (507)
++...+.-+.+.+..+++.+.. +++++++++-++.+++++++++....+.+...+.
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~~~ 145 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQKKQ 145 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
No 461
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=71.78 E-value=59 Score=33.88 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh------------------hhhhhhHHH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE------------------RSRCFKLEA 452 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~------------------~~~~~~~e~ 452 (507)
.+...+....+.........+...+..++..+...++....++-+.+...+++ +.++..+|.
T Consensus 177 ~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~ 256 (629)
T KOG0963|consen 177 EQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLER 256 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHH-------------------HHHHHHHHHHHhHHHHHHHHHHhhc
Q 010571 453 QIAELQKMLESSQ-------------------TIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 453 ~~~e~~~~~~~~~-------------------~~e~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
++..++.+++... ..++++.+|...++.++.-+.++++
T Consensus 257 e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e 313 (629)
T KOG0963|consen 257 EVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE 313 (629)
T ss_pred HHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=71.73 E-value=21 Score=27.15 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010571 435 SVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSV 491 (507)
Q Consensus 435 ~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~ 491 (507)
.+..-+..+...+..+|..+...-..++...+++.+++.+......|.+++.+...+
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar 61 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEAR 61 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHH
No 463
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=71.44 E-value=58 Score=28.41 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH--HHHHHHHHHH
Q 010571 398 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--TIENEVQILR 475 (507)
Q Consensus 398 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~--~~e~e~~~~~ 475 (507)
+..++...........+++.+++..++.- ...++.+.++++..+.++++++.+.-.+++... .+.-+..+.+
T Consensus 46 k~d~e~~~~~~~a~~~eLr~el~~~~k~~------~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r 119 (177)
T PF07798_consen 46 KSDLENQEYLFKAAIAELRSELQNSRKSE------FAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIR 119 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HhHHHHHHHHHHhhcc
Q 010571 476 QQKSAFEQEMERATSV 491 (507)
Q Consensus 476 ~~~~~~~~~~~~~~~~ 491 (507)
.+....+..+++.+.+
T Consensus 120 ~e~~~~~~ki~e~~~k 135 (177)
T PF07798_consen 120 EEQAKQELKIQELNNK 135 (177)
T ss_pred HHHHHHHHHHHHHHHH
No 464
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=71.41 E-value=25 Score=25.73 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH------------HHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010571 433 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ------------TIENEVQILRQQKSAFEQEMERATSV 491 (507)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~------------~~e~e~~~~~~~~~~~~~~~~~~~~~ 491 (507)
+.+...++..+++.-+.+.-.+--+++++++.- ++.-++..++++++.+.+.+.++...
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~ 72 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKA 72 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 465
>PRK11281 hypothetical protein; Provisional
Probab=71.40 E-value=39 Score=38.63 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHh------HHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE------LSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e------~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
.+....+++...++..+....++.++.++++++.++.......+ +.+.+..+.+++..+++.|..+++...++-
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHH----HHHHHHHHHHHhHHHHHHHHH
Q 010571 463 SSQ----TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 463 ~~~----~~e~e~~~~~~~~~~~~~~~~ 486 (507)
..+ ..+..+.+.++++++.++++.
T Consensus 153 ~~qT~PERAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHh
No 466
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=71.39 E-value=17 Score=30.17 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=0.0
Q ss_pred HhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 010571 431 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQ 477 (507)
Q Consensus 431 ~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~ 477 (507)
++.+.++.+.+..++++++..++++|+..|.-..+.|-+.-+++.++
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~~ 47 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRNRQLEQS 47 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 467
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=71.27 E-value=15 Score=34.60 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 470 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e 470 (507)
+..-|+..|.+.++++.+..++-++...+++.++..+.-|+-+.+|+++.|++-+++-++
T Consensus 148 qVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 148 QVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=71.19 E-value=59 Score=27.01 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhh----HHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHh
Q 010571 388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL----SKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 463 (507)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~ 463 (507)
+.+-+.++..+.++.......-...++-.+.|..+.++++.. .+++..++..++.....+.-+-+--+..+++.+.
T Consensus 37 ~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEyke 116 (159)
T PF04949_consen 37 RAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKE 116 (159)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred HH----HHHHHHHHHHHhHHHHHHHHHHhhccc
Q 010571 464 SQ----TIENEVQILRQQKSAFEQEMERATSVQ 492 (507)
Q Consensus 464 ~~----~~e~e~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
.. +..++..+|--.+-.|-.+.+.++...
T Consensus 117 alea~nEknkeK~~Lv~~L~eLv~eSE~~rmKK 149 (159)
T PF04949_consen 117 ALEAFNEKNKEKAQLVTRLMELVSESERLRMKK 149 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=71.07 E-value=80 Score=30.68 Aligned_cols=94 Identities=15% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-HHHH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIEN 469 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~~e~ 469 (507)
.+.+....+.+......+..++.+++ ++.+...+--.+..++++.+.+.+++....++.+.+++++++....+ ++++
T Consensus 82 ~q~~~~q~~~~~~~~~~v~~ek~rl~--~~~i~~~iL~~~~~l~~~~Ealsk~~~~~~k~~~kL~~kr~q~~~~q~~l~k 159 (377)
T KOG2896|consen 82 EQCLSAQVQSMRVEMKEVSEEKLRLQ--IECIQLKILVLESNLQRQIEALSKKRAHLEKTKQKLEDKRQQFNASQVKLQK 159 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHH
Q 010571 470 EVQILRQQKSAFEQEME 486 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~ 486 (507)
+...+-+..-++....+
T Consensus 160 ~~k~l~e~~~~l~a~re 176 (377)
T KOG2896|consen 160 QLKSLIELRNELVAKRE 176 (377)
T ss_pred hHHHHHHHHHHHHHHHH
No 470
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=71.07 E-value=72 Score=27.94 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred CcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCC--cEEEEECCCCcEEeeee
Q 010571 159 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFN--DLHVLDLQTNEWSQPEI 236 (507)
Q Consensus 159 G~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~--~i~~~d~~~~~W~~~~~ 236 (507)
|-+....-...+|++|..++.|..+.+ ++.+....---+..+.+..|.|+=|...+.... .+++|++.++.-..+..
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i-~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQI-DQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEe-cCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Q ss_pred cCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEE
Q 010571 237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 275 (507)
Q Consensus 237 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d 275 (507)
..+. ...-.++-..++.|-+-+=...+..++++...+
T Consensus 158 ~~dk--kqQVis~e~~gd~L~Lki~vYddd~~~~sh~e~ 194 (200)
T PF15525_consen 158 WKDK--KQQVISAEKNGDNLNLKINVYDDDDYNKSHKEK 194 (200)
T ss_pred cccc--ceeEEEEEEeCCEEEEEEEEEecCchhhheeee
No 471
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=71.04 E-value=39 Score=31.44 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHH--hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010571 398 KRVLELSLTEVR--TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQI 473 (507)
Q Consensus 398 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~ 473 (507)
+..+.+.+.... ...+....+.+...+.++..++|++...+++.+.++++.+++.++.+.+.+|.+++..-.++.+
T Consensus 172 R~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 172 RSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=70.99 E-value=75 Score=33.71 Aligned_cols=107 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred ccccchhhHHhhHHHHHHHHHhhH---------------HHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhh
Q 010571 383 SEKDVRTDIDAIKEDKRVLELSLT---------------EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC 447 (507)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 447 (507)
+...+..+++++.+++..+-..+. +...+...|.+..+.++..+.+..+.+..+..++...+...
T Consensus 472 ~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 472 SVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred hhHHHHHHHHHHHHHhHH---------HHHHHHHHHHHhHHHHHHHHHHhh
Q 010571 448 FKLEAQIAELQKMLESSQ---------TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 448 ~~~e~~~~e~~~~~~~~~---------~~e~e~~~~~~~~~~~~~~~~~~~ 489 (507)
++....-.+++.++.+.+ +.-.--.++.+++...|..+.+++
T Consensus 552 qes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeAR 602 (739)
T PF07111_consen 552 QESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEAR 602 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=70.97 E-value=40 Score=35.03 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhHHHHhhhhhhHHHHHH---------------------hhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571 404 SLTEVRTENSRFREKIDE---------------------VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 404 ~~~~~~~~~~~l~~~~~~---------------------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
.......+.+.++..+.+ +...+.+.+.++...+.++..++++..+++.++..+-....
T Consensus 276 ~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 355 (498)
T TIGR03007 276 DVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEA 355 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHhhcccc---cCCCceeeeec
Q 010571 463 SSQTIENEVQILRQQKSAFEQEMERATSVQT---QGSGGVWRWIA 504 (507)
Q Consensus 463 ~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 504 (507)
+...|+++.+..++.-+.+.+.+++++..+. ....+.|+=|.
T Consensus 356 el~~L~Re~~~~~~~Y~~l~~r~eea~~~~~~~~~~~~~~i~vi~ 400 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLLTRRESAEVSKQMEVQDKAVSFRIID 400 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCCceEEEeC
No 474
>PRK11281 hypothetical protein; Provisional
Probab=70.83 E-value=33 Score=39.23 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh-------------hhhhhhHHHHH
Q 010571 388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-------------RSRCFKLEAQI 454 (507)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~-------------~~~~~~~e~~~ 454 (507)
.+...+.-+..-.+-....+..++.+++++.++...+++.+..++++..+++.... +.++.+++.++
T Consensus 58 ~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~L 137 (1113)
T PRK11281 58 DKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQL 137 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhcccccCCCce
Q 010571 455 AELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQTQGSGGV 499 (507)
Q Consensus 455 ~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (507)
++.++.+.... .++..-++.|.++.+..+.+++.+.......-+.
T Consensus 138 q~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~ 186 (1113)
T PRK11281 138 QNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGG 186 (1113)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCC
No 475
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.72 E-value=11 Score=27.05 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=0.0
Q ss_pred hHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 415 l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
+...|.+++..+.-.+.-+++.-+.+-.+++++.+++.+++.+.++++...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 476
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=70.53 E-value=81 Score=28.31 Aligned_cols=101 Identities=16% Similarity=0.253 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh-----------hhhhhhHHHHHH
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-----------RSRCFKLEAQIA 455 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~-----------~~~~~~~e~~~~ 455 (507)
+..+..++......++..+.......++++..+..+...-+.+.+.+++....+.++ .+++......+.
T Consensus 74 ~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~ 153 (207)
T PF05010_consen 74 LLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIA 153 (207)
T ss_pred HHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHH
Q 010571 456 ELQKMLESSQ-TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 456 e~~~~~~~~~-~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
+.+.+.+..- .|+..+...+-+.++++.++++
T Consensus 154 ~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 154 QVRSKHQAELLALQASLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=70.46 E-value=61 Score=27.67 Aligned_cols=104 Identities=16% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-HHH
Q 010571 390 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIE 468 (507)
Q Consensus 390 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~~e 468 (507)
+...|+.....+...+.............+..++..+....+++...-.+++.+.+.+...=....+....+...+ ++.
T Consensus 51 e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~ 130 (158)
T PF09744_consen 51 ELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELK 130 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccc
Q 010571 469 NEVQILRQQKSAFEQEMERATSVQT 493 (507)
Q Consensus 469 ~e~~~~~~~~~~~~~~~~~~~~~~~ 493 (507)
++...++++-..+-+.+.+.=++++
T Consensus 131 ~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 131 KEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>PRK11546 zraP zinc resistance protein; Provisional
Probab=70.38 E-value=22 Score=29.60 Aligned_cols=59 Identities=7% Similarity=0.044 Sum_probs=0.0
Q ss_pred HhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010571 431 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 431 ~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~~~~ 489 (507)
++.+..+.-.++-..+...+++++...+.+|+.+. --++++.++.+|++.|..++.+++
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
No 479
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.27 E-value=82 Score=28.28 Aligned_cols=107 Identities=10% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHhhHHHH-hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 010571 391 IDAIKEDKRVLELSLTEVR-TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN 469 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~ 469 (507)
...+.+.+-.+...++.++ .-...+.+.++++.+.+++.+.-++.+++-..+..+..+-+++.....-.-.|..-.+++
T Consensus 21 ~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~ 100 (246)
T KOG4657|consen 21 EKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQS 100 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHhhcccccCCC
Q 010571 470 EVQILRQQKSAFEQEMERATSVQTQGSG 497 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (507)
+++.++..+|.++.+..+.++.-.++++
T Consensus 101 elEvl~~n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 101 ELEVLRRNLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 480
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=70.23 E-value=26 Score=31.44 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHhhccchhhHHhHHHHHhhHhhh-hhhhhhHHHHHHHHHHHHHhHH------------------HHHHHHHHHHHhHHH
Q 010571 420 DEVNSTHSELSKELSSVQGQLVAE-RSRCFKLEAQIAELQKMLESSQ------------------TIENEVQILRQQKSA 480 (507)
Q Consensus 420 ~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~e~~~~e~~~~~~~~~------------------~~e~e~~~~~~~~~~ 480 (507)
+.+++++++...+.+.+..+..+. +..+.-+..+++.++=+.++.| +|+++.++++.++..
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~ 239 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDA 239 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHh
Q 010571 481 FEQEMERA 488 (507)
Q Consensus 481 ~~~~~~~~ 488 (507)
+..+++..
T Consensus 240 L~~e~~r~ 247 (289)
T COG4985 240 LRAELERQ 247 (289)
T ss_pred Hhhhhhhc
No 481
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=70.16 E-value=26 Score=37.03 Aligned_cols=105 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHH
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT 466 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~ 466 (507)
+...++....+..++...+..-.....-=...+++++..+..+.+-.+......+...+..++++.++..+.......++
T Consensus 271 ~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~ 350 (563)
T TIGR00634 271 LAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEA 350 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcc
Q 010571 467 IENEVQILRQQKSAFEQEMERATSV 491 (507)
Q Consensus 467 ~e~e~~~~~~~~~~~~~~~~~~~~~ 491 (507)
+++++++++++...+-+++-+.|..
T Consensus 351 L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 351 LEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=70.08 E-value=53 Score=26.04 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHh---------------HHHHHhhHhhhhhhhhhHH
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE---------------LSSVQGQLVAERSRCFKLE 451 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e---------------~~~~~~~~~~~~~~~~~~e 451 (507)
+..+++.+...-..+...+.....+...+...+.+.+..++++..- .+...+-...++++...++
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie 80 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLE 80 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 010571 452 AQIAELQKMLESSQTIENEVQILRQQK 478 (507)
Q Consensus 452 ~~~~e~~~~~~~~~~~e~e~~~~~~~~ 478 (507)
..+..+++++...++.-++++...++.
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PRK04406 hypothetical protein; Provisional
Probab=69.94 E-value=21 Score=26.12 Aligned_cols=57 Identities=9% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 010571 416 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQ 472 (507)
Q Consensus 416 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~ 472 (507)
.+.++.++..+.+++..+.=.+.-++.+.+.+.+.++++..++++++.+.+..++.+
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 484
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.74 E-value=17 Score=28.73 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571 411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 465 (507)
Q Consensus 411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~ 465 (507)
++.+|-..+..++.++.....++.+++.++..+-++-..|+.+.+.+++++.+..
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 485
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.66 E-value=42 Score=35.43 Aligned_cols=101 Identities=13% Similarity=0.230 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ- 465 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~- 465 (507)
+...+..+...-..+...+.....--..+...++.....+++.+++..++.+.++.+++.+.+.++.+.+++.++....
T Consensus 349 l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 349 LEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------HHHHHHHHHHHhHHHHHHHHHH
Q 010571 466 ------------TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 466 ------------~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
+...-......+++.+.+++++
T Consensus 429 ~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~ 462 (560)
T PF06160_consen 429 RLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQ 462 (560)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhc
No 486
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=69.56 E-value=11 Score=30.22 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHh
Q 010571 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 463 (507)
Q Consensus 412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~ 463 (507)
..+.+.+|...+.+..+.+.+|++-+..-.. +++.+.+..+.|.+.+|++
T Consensus 65 ~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL~~ 114 (115)
T PF06476_consen 65 KAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAELKE 114 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHhh
No 487
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=69.48 E-value=30 Score=37.63 Aligned_cols=85 Identities=24% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHH
Q 010571 406 TEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAF 481 (507)
Q Consensus 406 ~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~ 481 (507)
.........++.+++.++.+..+++-++...+++++..+.++.+.++.+.+++.+|...+ .++.++.-.....+.+
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~l 664 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESL 664 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhc
Q 010571 482 EQEMERATS 490 (507)
Q Consensus 482 ~~~~~~~~~ 490 (507)
+..+.+.++
T Consensus 665 e~~~~~~e~ 673 (769)
T PF05911_consen 665 ETRLKDLEA 673 (769)
T ss_pred hhhhhHHHH
No 488
>PRK04406 hypothetical protein; Provisional
Probab=69.48 E-value=33 Score=25.08 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhc
Q 010571 437 QGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATS 490 (507)
Q Consensus 437 ~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~~~~~ 490 (507)
....+....++.++|.+++-.+.-+.++. +.++++..+++++..+.+.+.+...
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 489
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=69.35 E-value=1.3e+02 Score=30.35 Aligned_cols=225 Identities=6% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCCCCeEeeCCCCCeEEeccCCCCCCccccceE------------EEECCEEEEEcCCCCCccCCceEEEECCCCceeEe
Q 010571 1 MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAA------------AVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 68 (507)
Q Consensus 1 ~~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~------------~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~ 68 (507)
+.-|-|.|||.++.-+++.+ .+|.-|.--.. +++++.++.+ ..-...+++++-.+--.++
T Consensus 285 ~~GdIylydP~td~lekldI--~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~------VSRGkaFi~~~~~~~~iqv 356 (668)
T COG4946 285 NAGDIYLYDPETDSLEKLDI--GLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIAL------VSRGKAFIMRPWDGYSIQV 356 (668)
T ss_pred cCCcEEEeCCCcCcceeeec--CCccccccccccccCHHHhhhhhccCCCcEEEE------EecCcEEEECCCCCeeEEc
Q ss_pred eeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEE
Q 010571 69 RLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT 148 (507)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~ 148 (507)
+.. .+..+.-...+++-++.|-...+. +.+||..++.-+.+ ..+.++.....+
T Consensus 357 ~~~------------------~~VrY~r~~~~~e~~vigt~dgD~-----l~iyd~~~~e~kr~----e~~lg~I~av~v 409 (668)
T COG4946 357 GKK------------------GGVRYRRIQVDPEGDVIGTNDGDK-----LGIYDKDGGEVKRI----EKDLGNIEAVKV 409 (668)
T ss_pred CCC------------------CceEEEEEccCCcceEEeccCCce-----EEEEecCCceEEEe----eCCccceEEEEE
Q ss_pred EECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCC
Q 010571 149 LVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT 228 (507)
Q Consensus 149 ~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~ 228 (507)
.-+++..+.+.. .-.++.+|+++++-+.+. -..-.--+-..+..+.-++.=+...+-.+..|.+||..+
T Consensus 410 s~dGK~~vvaNd------r~el~vididngnv~~id-----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 410 SPDGKKVVVAND------RFELWVIDIDNGNVRLID-----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred cCCCcEEEEEcC------ceEEEEEEecCCCeeEec-----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Q ss_pred CcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEE
Q 010571 229 NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 275 (507)
Q Consensus 229 ~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d 275 (507)
+.--. ...|..-...-+.--+++-+.+--...-...+|-.+||
T Consensus 479 ~Kiy~----vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fn 521 (668)
T COG4946 479 GKIYD----VTTPTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFN 521 (668)
T ss_pred CeEEE----ecCCcccccCcccCCCCcEEEEEeccccCCCCCeeEEE
No 490
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=69.25 E-value=66 Score=33.19 Aligned_cols=97 Identities=12% Similarity=0.187 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010571 394 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQI 473 (507)
Q Consensus 394 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~ 473 (507)
..++...+++.....+++..+...++.......++++.++.+..+-+...+...+.++.+..++++..+....-+++.-+
T Consensus 412 ~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~ 491 (607)
T KOG0240|consen 412 LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLT 491 (607)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHhhc
Q 010571 474 LRQQKSAFEQEMERATS 490 (507)
Q Consensus 474 ~~~~~~~~~~~~~~~~~ 490 (507)
+..++...-+..-+..+
T Consensus 492 al~el~~~~~~~~~~~~ 508 (607)
T KOG0240|consen 492 ALEELAVNYDQKSEEKE 508 (607)
T ss_pred HHHHHHHhhhHHHHHHh
No 491
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.22 E-value=27 Score=33.29 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 010571 427 SELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEMERATSVQT 493 (507)
Q Consensus 427 ~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~~e~e~~~~~~~~~~~~~~~~~~~~~~~ 493 (507)
+.+++..++.-++++.+++.+...++++.+..+++..+. .||++.+.+++..+-|..-.+++...-+
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
No 492
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=69.18 E-value=64 Score=26.61 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHh--------HHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE--------LSSVQGQLVAERSRCFKLEAQIAELQKMLE 462 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e--------~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~ 462 (507)
+..++.+...+.........+.+.|+..++..+-+...+.++ ...++.+++.+.-+...+++.-.+++++.+
T Consensus 25 L~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r~~~~vl~r~~L~allRkqAVvRrqi~eL~lq~~~i~ekR~~l~ke~~ 104 (147)
T PF02090_consen 25 LLQLQREEQKLDAEEEAIEEQRAGLQSLLDTQRAEGCVLSREELYALLRKQAVVRRQIQELNLQEQQIQEKRRQLEKEKQ 104 (147)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHH----------------HHHHHHHHHHHhHHHHHHHHHH
Q 010571 463 SSQ----------------TIENEVQILRQQKSAFEQEMER 487 (507)
Q Consensus 463 ~~~----------------~~e~e~~~~~~~~~~~~~~~~~ 487 (507)
+.+ ....+....+.++.+.|.|.||
T Consensus 105 ~~~~~r~~wlrK~dkY~rw~~~~kr~~r~~~l~qeE~E~EE 145 (147)
T PF02090_consen 105 EQQEQRKHWLRKEDKYDRWQQRQKRLRRLQQLRQEETEQEE 145 (147)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
No 493
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=69.16 E-value=98 Score=30.18 Aligned_cols=91 Identities=18% Similarity=0.272 Sum_probs=0.0
Q ss_pred hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH---
Q 010571 389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--- 465 (507)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~--- 465 (507)
.+++.++.+...+.+.+++.-.+...|-+.+++ .++-|.+-+.++|.+...-+++...+.+.--+|+..-
T Consensus 421 eelqsvqRELeVLSEQYSQKCLEnahLaqalEa-------erqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgd 493 (593)
T KOG4807|consen 421 EELQSVQRELEVLSEQYSQKCLENAHLAQALEA-------ERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGD 493 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccC
Q ss_pred ----------------------HHHHHHHHHHHhHHHHHHHHH
Q 010571 466 ----------------------TIENEVQILRQQKSAFEQEME 486 (507)
Q Consensus 466 ----------------------~~e~e~~~~~~~~~~~~~~~~ 486 (507)
-.+.|++=+.|+++.+.++++
T Consensus 494 GgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQ 536 (593)
T KOG4807|consen 494 GGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQ 536 (593)
T ss_pred CCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHH
No 494
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=69.15 E-value=56 Score=28.22 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 470 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e 470 (507)
+...+..+.+++..+..-.+....+.+.++..+...++.++.-.++...+..+++.++.++.++..+++-..+.-....+
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~ 155 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVH 155 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q ss_pred HHH
Q 010571 471 VQI 473 (507)
Q Consensus 471 ~~~ 473 (507)
.+.
T Consensus 156 ~~K 158 (203)
T KOG3433|consen 156 LEK 158 (203)
T ss_pred HHH
No 495
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=69.09 E-value=61 Score=34.55 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 010571 392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEV 471 (507)
Q Consensus 392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~ 471 (507)
+.--.++++++....+.+.+..+++..|+.++.++...+.++++..++....+.+..-++..-+.-++.-+...+..+.+
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHH
Q 010571 472 QILRQQKSAFEQ 483 (507)
Q Consensus 472 ~~~~~~~~~~~~ 483 (507)
+...++++..+.
T Consensus 155 ~~~~~~~q~~~R 166 (632)
T PF14817_consen 155 QGQVEQLQDIQR 166 (632)
T ss_pred HHHHHHHHHHHh
No 496
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=69.09 E-value=72 Score=27.17 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhh---hhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010571 399 RVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS---RCFKLEAQIAELQKMLESSQTIENEVQILR 475 (507)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~ 475 (507)
+.+...+.....+....+........++..+..+|.....++..++. -.++++.++.+++++..+..+--+..-.-.
T Consensus 2 eqi~~Im~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 2 EQIDKIMAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred hHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHhhcc
Q 010571 476 QQKSAFEQEMERATSV 491 (507)
Q Consensus 476 ~~~~~~~~~~~~~~~~ 491 (507)
+--..++..+..+..+
T Consensus 82 ~~~~ai~~al~~akak 97 (155)
T PF06810_consen 82 KKDSAIKSALKGAKAK 97 (155)
T ss_pred HHHHHHHHHHHHcCCC
No 497
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=69.06 E-value=71 Score=27.09 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 010571 410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERAT 489 (507)
Q Consensus 410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~ 489 (507)
.+....+..+..+...-..+++.+.+....+..+.+.+...+..+.+-.++..+..+|-.....-.+......++++.++
T Consensus 67 kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~~~~e~~~~~e~~Ee~E~EE 146 (152)
T PF07321_consen 67 KELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQEQAEARQQREYQEEQEQEE 146 (152)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=68.83 E-value=33 Score=35.19 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHH-HHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHH
Q 010571 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSS-VQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN 469 (507)
Q Consensus 391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~ 469 (507)
+..|+.+...+.........+.......+...+.++.+.++.++. .++-+...+....-++++.+.+.+++...+..-+
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~ 366 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLS 366 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHhHHHHHHHHHHhhccccc
Q 010571 470 EVQILRQQKSAFEQEMERATSVQTQ 494 (507)
Q Consensus 470 e~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
..-+.+.+...|+.+++-.++.-++
T Consensus 367 ~~~~~~~~l~~L~Re~~~~r~~ye~ 391 (458)
T COG3206 367 KLPKLQVQLRELEREAEAARSLYET 391 (458)
T ss_pred hchHhhhHHHHHHHHHHHHHHHHHH
No 499
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=68.79 E-value=44 Score=27.50 Aligned_cols=70 Identities=26% Similarity=0.253 Sum_probs=0.0
Q ss_pred hccchhhHHhHHHHHhhHhhhhhhhh-hHHHHHHHHH----HHHHhHH-HHHHHHHHHHHhHHHHHHHHHHhhccc
Q 010571 423 NSTHSELSKELSSVQGQLVAERSRCF-KLEAQIAELQ----KMLESSQ-TIENEVQILRQQKSAFEQEMERATSVQ 492 (507)
Q Consensus 423 ~~~~~~~~~e~~~~~~~~~~~~~~~~-~~e~~~~e~~----~~~~~~~-~~e~e~~~~~~~~~~~~~~~~~~~~~~ 492 (507)
+.-.+++.++++....+++.+-..++ +.+..+.+.+ +.....+ .++++.++..+++..+..++++.+.+.
T Consensus 15 e~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L~ 90 (131)
T PF11068_consen 15 EKWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQKLE 90 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 500
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=68.77 E-value=76 Score=31.68 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=0.0
Q ss_pred chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhh-----------------hhhhhhh
Q 010571 387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA-----------------ERSRCFK 449 (507)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~-----------------~~~~~~~ 449 (507)
+...+..++.-+..++..+.....+...++..|+.++..+.+..--+...+..++. +-.++.+
T Consensus 249 l~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~ 328 (384)
T PF03148_consen 249 LRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKE 328 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHH
Q 010571 450 LEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEM 485 (507)
Q Consensus 450 ~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~ 485 (507)
++.-+..++++|.+.+ .|.+-...+.+++......+
T Consensus 329 l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL 368 (384)
T PF03148_consen 329 LRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSL 368 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!