Query 010572
Match_columns 507
No_of_seqs 286 out of 1475
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 02:06:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1909 Ran GTPase-activating 99.9 7.5E-21 1.6E-25 190.2 15.2 263 214-486 20-296 (382)
2 KOG1909 Ran GTPase-activating 99.8 1.3E-20 2.9E-25 188.4 15.1 278 196-487 29-327 (382)
3 cd00116 LRR_RI Leucine-rich re 99.8 3E-19 6.6E-24 181.1 25.1 273 198-487 24-305 (319)
4 cd00116 LRR_RI Leucine-rich re 99.8 2.6E-19 5.6E-24 181.6 23.6 237 196-470 80-319 (319)
5 PLN00113 leucine-rich repeat r 99.7 3.2E-17 6.9E-22 191.1 12.2 303 118-470 23-344 (968)
6 COG5238 RNA1 Ran GTPase-activa 99.6 1.3E-14 2.8E-19 141.4 10.0 274 210-490 16-315 (388)
7 KOG4308 LRR-containing protein 99.5 3.1E-15 6.6E-20 160.7 4.6 280 199-493 89-465 (478)
8 KOG4308 LRR-containing protein 99.5 8.8E-15 1.9E-19 157.2 3.9 255 225-490 52-320 (478)
9 PLN00113 leucine-rich repeat r 99.5 1.6E-13 3.5E-18 160.1 10.7 235 197-470 140-392 (968)
10 KOG4194 Membrane glycoprotein 99.2 1.3E-12 2.7E-17 138.4 -1.7 63 173-239 124-187 (873)
11 KOG4194 Membrane glycoprotein 99.2 1.2E-11 2.5E-16 131.3 4.5 41 286-331 194-234 (873)
12 COG5238 RNA1 Ran GTPase-activa 99.2 8.2E-11 1.8E-15 115.1 10.0 197 281-482 22-236 (388)
13 KOG0444 Cytoskeletal regulator 99.0 3.1E-11 6.6E-16 128.8 -3.6 178 285-495 146-333 (1255)
14 KOG0618 Serine/threonine phosp 98.7 8.1E-09 1.8E-13 115.0 3.0 115 373-496 310-448 (1081)
15 PRK15370 E3 ubiquitin-protein 98.7 6.1E-08 1.3E-12 109.9 9.5 102 351-470 326-427 (754)
16 PRK15387 E3 ubiquitin-protein 98.6 1.3E-07 2.8E-12 107.1 11.4 34 290-332 283-316 (788)
17 KOG2120 SCF ubiquitin ligase, 98.6 8.3E-08 1.8E-12 95.4 8.6 200 225-486 185-388 (419)
18 PRK15387 E3 ubiquitin-protein 98.6 8.1E-08 1.8E-12 108.7 9.1 127 318-483 342-468 (788)
19 KOG0444 Cytoskeletal regulator 98.6 5.4E-09 1.2E-13 111.9 -1.8 251 192-496 98-381 (1255)
20 KOG3207 Beta-tubulin folding c 98.6 1.5E-08 3.3E-13 105.0 0.7 203 86-331 49-259 (505)
21 PRK15370 E3 ubiquitin-protein 98.6 1.6E-07 3.5E-12 106.5 8.8 201 198-470 200-400 (754)
22 KOG0618 Serine/threonine phosp 98.5 1.9E-08 4.1E-13 112.1 0.8 48 428-480 451-499 (1081)
23 KOG2120 SCF ubiquitin ligase, 98.3 2.8E-07 6E-12 91.8 3.3 194 226-475 137-354 (419)
24 KOG0472 Leucine-rich repeat pr 98.3 4.1E-07 8.9E-12 93.7 3.0 45 282-332 245-289 (565)
25 KOG3207 Beta-tubulin folding c 98.2 9.8E-08 2.1E-12 99.1 -2.3 111 197-329 121-233 (505)
26 PLN03210 Resistant to P. syrin 98.1 2.7E-06 5.9E-11 101.7 6.6 62 175-242 612-674 (1153)
27 PLN03210 Resistant to P. syrin 98.1 7E-06 1.5E-10 98.2 9.0 102 175-299 590-691 (1153)
28 KOG1259 Nischarin, modulator o 98.0 1.6E-06 3.5E-11 86.5 1.3 149 287-490 282-432 (490)
29 PF14580 LRR_9: Leucine-rich r 98.0 2.7E-06 5.8E-11 80.1 1.6 133 287-467 17-149 (175)
30 PF14580 LRR_9: Leucine-rich r 97.9 6.9E-06 1.5E-10 77.3 3.3 84 373-470 42-125 (175)
31 KOG4237 Extracellular matrix p 97.9 2.7E-06 5.8E-11 87.7 0.1 188 281-487 156-375 (498)
32 KOG0472 Leucine-rich repeat pr 97.7 1.6E-06 3.6E-11 89.3 -5.1 60 399-470 250-309 (565)
33 KOG4341 F-box protein containi 97.6 0.00015 3.3E-09 75.5 8.1 185 287-493 266-457 (483)
34 smart00368 LRR_RI Leucine rich 97.5 0.00011 2.4E-09 47.7 3.6 27 428-454 1-27 (28)
35 KOG4237 Extracellular matrix p 97.5 4.8E-05 1E-09 78.6 2.5 65 397-470 270-334 (498)
36 KOG0617 Ras suppressor protein 97.5 3.7E-06 7.9E-11 78.0 -5.6 86 223-332 31-116 (264)
37 KOG1859 Leucine-rich repeat pr 97.4 1.2E-05 2.5E-10 88.4 -3.1 122 284-454 182-306 (1096)
38 PLN03150 hypothetical protein; 97.4 0.00034 7.4E-09 78.6 7.2 107 291-440 420-526 (623)
39 KOG1259 Nischarin, modulator o 97.3 6.4E-05 1.4E-09 75.3 0.0 109 285-442 303-412 (490)
40 KOG0617 Ras suppressor protein 97.2 7.8E-06 1.7E-10 75.9 -6.2 128 285-441 29-162 (264)
41 KOG4242 Predicted myosin-I-bin 97.2 0.00053 1.1E-08 72.4 6.0 78 375-453 415-492 (553)
42 smart00368 LRR_RI Leucine rich 97.2 0.00043 9.2E-09 45.0 3.4 27 288-314 1-27 (28)
43 KOG4341 F-box protein containi 97.2 0.00066 1.4E-08 70.8 6.0 247 198-470 139-413 (483)
44 PLN03150 hypothetical protein; 97.1 0.00083 1.8E-08 75.5 7.1 86 373-470 442-527 (623)
45 PF13855 LRR_8: Leucine rich r 97.1 0.00012 2.7E-09 56.1 -0.1 60 374-441 2-61 (61)
46 KOG3665 ZYG-1-like serine/thre 97.0 0.0021 4.6E-08 72.8 8.4 116 286-416 145-265 (699)
47 KOG2982 Uncharacterized conser 96.8 0.0041 8.9E-08 62.6 7.6 64 373-443 199-263 (418)
48 COG4886 Leucine-rich repeat (L 96.6 0.0026 5.7E-08 66.9 5.4 42 284-331 158-199 (394)
49 COG4886 Leucine-rich repeat (L 96.6 0.00083 1.8E-08 70.7 1.6 147 289-470 140-289 (394)
50 KOG4242 Predicted myosin-I-bin 96.4 0.002 4.2E-08 68.3 3.0 108 373-486 354-495 (553)
51 KOG3735 Tropomodulin and leiom 96.4 0.0055 1.2E-07 62.4 5.6 117 373-491 198-316 (353)
52 PF13855 LRR_8: Leucine rich r 96.3 0.0012 2.6E-08 50.6 0.6 39 289-332 1-39 (61)
53 KOG1859 Leucine-rich repeat pr 96.3 0.00029 6.4E-09 77.7 -3.9 136 291-484 166-305 (1096)
54 KOG1947 Leucine rich repeat pr 96.3 0.019 4.1E-07 61.3 9.8 46 373-421 269-316 (482)
55 PF12799 LRR_4: Leucine Rich r 96.2 0.0061 1.3E-07 43.9 3.6 16 427-442 22-37 (44)
56 PF13516 LRR_6: Leucine Rich r 96.2 0.003 6.4E-08 39.3 1.6 22 429-450 2-23 (24)
57 KOG3665 ZYG-1-like serine/thre 96.1 0.019 4.2E-07 65.2 8.7 146 288-451 121-272 (699)
58 KOG0531 Protein phosphatase 1, 95.8 0.0016 3.6E-08 69.4 -1.2 220 196-470 94-317 (414)
59 PF13516 LRR_6: Leucine Rich r 95.8 0.0049 1.1E-07 38.3 1.4 23 288-310 1-23 (24)
60 PF12799 LRR_4: Leucine Rich r 95.8 0.017 3.7E-07 41.6 4.4 38 373-415 1-38 (44)
61 KOG0531 Protein phosphatase 1, 95.6 0.0025 5.4E-08 68.0 -0.9 86 285-387 114-200 (414)
62 KOG1947 Leucine rich repeat pr 95.6 0.031 6.8E-07 59.6 7.4 140 292-449 166-316 (482)
63 KOG2982 Uncharacterized conser 95.1 0.013 2.9E-07 59.0 2.5 165 286-470 68-261 (418)
64 KOG4579 Leucine-rich repeat (L 94.8 0.015 3.3E-07 52.6 1.8 61 373-443 53-114 (177)
65 KOG0532 Leucine-rich repeat (L 94.5 0.01 2.2E-07 64.4 0.0 135 282-445 114-250 (722)
66 KOG3735 Tropomodulin and leiom 94.2 0.07 1.5E-06 54.6 5.3 90 373-463 227-318 (353)
67 KOG0532 Leucine-rich repeat (L 92.4 0.0078 1.7E-07 65.3 -5.1 35 430-470 212-246 (722)
68 PF06881 Elongin_A: RNA polyme 92.3 0.32 6.9E-06 42.1 5.6 64 28-111 3-69 (109)
69 KOG4579 Leucine-rich repeat (L 91.8 0.091 2E-06 47.7 1.7 36 374-414 78-113 (177)
70 KOG3926 F-box proteins [Amino 91.8 0.1 2.2E-06 51.7 2.2 88 7-113 178-276 (332)
71 KOG2123 Uncharacterized conser 91.7 0.03 6.4E-07 56.2 -1.7 105 288-435 18-123 (388)
72 KOG4658 Apoptotic ATPase [Sign 91.5 0.16 3.4E-06 59.4 3.7 108 198-329 546-653 (889)
73 KOG2739 Leucine-rich acidic nu 90.1 0.12 2.6E-06 51.2 0.9 64 373-442 65-129 (260)
74 PRK15386 type III secretion pr 87.6 1.9 4.1E-05 46.1 7.8 134 223-411 50-187 (426)
75 PF08263 LRRNT_2: Leucine rich 86.6 0.43 9.2E-06 33.9 1.6 40 124-170 3-43 (43)
76 smart00367 LRR_CC Leucine-rich 86.0 0.83 1.8E-05 28.7 2.6 22 429-450 2-24 (26)
77 KOG1644 U2-associated snRNP A' 85.8 0.99 2.1E-05 43.5 4.1 88 373-469 64-151 (233)
78 KOG1644 U2-associated snRNP A' 84.3 0.82 1.8E-05 44.1 2.9 65 285-361 60-124 (233)
79 smart00367 LRR_CC Leucine-rich 83.6 1.1 2.5E-05 28.1 2.4 23 288-310 1-24 (26)
80 KOG2739 Leucine-rich acidic nu 83.3 0.52 1.1E-05 46.8 1.1 61 350-414 65-129 (260)
81 KOG3864 Uncharacterized conser 83.2 1.4 3E-05 42.5 3.9 85 373-469 101-187 (221)
82 PRK15386 type III secretion pr 82.4 2.6 5.7E-05 45.1 6.0 141 282-468 45-187 (426)
83 KOG3864 Uncharacterized conser 82.3 1.2 2.7E-05 42.8 3.2 59 373-438 125-185 (221)
84 PF13504 LRR_7: Leucine rich r 82.2 0.97 2.1E-05 25.7 1.5 12 290-301 2-13 (17)
85 KOG2123 Uncharacterized conser 72.9 0.86 1.9E-05 46.0 -0.9 39 286-331 38-76 (388)
86 PF00560 LRR_1: Leucine Rich R 67.9 2.1 4.5E-05 25.8 0.4 13 319-331 1-13 (22)
87 cd03717 SOCS_SOCS_like SOCS (s 67.5 13 0.00028 25.9 4.4 36 3-41 2-37 (39)
88 KOG4658 Apoptotic ATPase [Sign 64.4 5.7 0.00012 46.7 3.4 43 284-331 566-608 (889)
89 KOG3763 mRNA export factor TAP 61.5 9.7 0.00021 41.9 4.2 87 373-464 218-307 (585)
90 cd03742 SOCS_Rab40 SOCS (suppr 57.2 19 0.00042 25.9 3.8 36 2-40 1-36 (43)
91 KOG3763 mRNA export factor TAP 55.7 19 0.00041 39.7 5.2 85 401-492 218-305 (585)
92 cd03735 SOCS_SOCS1 SOCS (suppr 55.3 29 0.00062 25.0 4.4 37 2-41 1-37 (43)
93 smart00370 LRR Leucine-rich re 54.1 11 0.00024 23.3 2.0 14 318-331 2-15 (26)
94 smart00369 LRR_TYP Leucine-ric 54.1 11 0.00024 23.3 2.0 14 318-331 2-15 (26)
95 cd03737 SOCS_SOCS3 SOCS (suppr 52.5 24 0.00052 25.2 3.6 34 3-40 2-35 (42)
96 smart00365 LRR_SD22 Leucine-ri 46.4 17 0.00037 23.2 1.9 14 318-331 2-15 (26)
97 PF07525 SOCS_box: SOCS box; 39.9 32 0.00069 24.0 2.7 35 4-40 1-37 (40)
98 cd03587 SOCS SOCS (suppressors 39.2 66 0.0014 22.5 4.2 37 4-41 2-39 (41)
99 smart00253 SOCS suppressors of 35.9 87 0.0019 22.2 4.4 36 3-41 6-41 (43)
100 cd03736 SOCS_SOCS2 SOCS (suppr 35.4 85 0.0018 22.2 4.2 34 3-41 2-35 (41)
101 cd03734 SOCS_CIS1 SOCS (suppre 35.3 90 0.0019 22.2 4.3 34 3-41 2-35 (41)
102 cd03740 SOCS_SOCS6 SOCS (suppr 34.8 72 0.0016 22.6 3.8 37 3-42 2-38 (41)
103 cd03716 SOCS_ASB_like SOCS (su 33.8 93 0.002 21.9 4.3 36 3-41 2-40 (42)
104 smart00364 LRR_BAC Leucine-ric 32.8 27 0.00058 22.4 1.2 13 290-302 3-15 (26)
105 PF11879 DUF3399: Domain of un 32.6 19 0.0004 30.9 0.6 19 114-132 36-54 (104)
106 cd03745 SOCS_WSB2_SWIP2 SOCS ( 28.7 1E+02 0.0022 21.7 3.7 34 4-40 3-36 (39)
107 PF12937 F-box-like: F-box-lik 27.8 47 0.001 23.5 2.0 22 29-50 1-22 (47)
108 cd03746 SOCS_WSB1_SWIP1 SOCS ( 26.5 1.3E+02 0.0028 21.2 3.9 35 4-41 3-37 (40)
109 cd03733 SOCS_WSB_SWIP SOCS (su 24.7 1.4E+02 0.0031 20.8 3.9 34 4-40 3-36 (39)
110 cd03718 SOCS_SSB1_4 SOCS (supp 24.3 1.6E+02 0.0035 20.8 4.2 36 3-40 2-39 (42)
111 cd03722 SOCS_ASB3 SOCS (suppre 22.1 1.8E+02 0.0038 21.7 4.1 41 2-42 1-44 (51)
112 PF00646 F-box: F-box domain; 21.0 47 0.001 23.3 0.9 22 29-50 3-24 (48)
No 1
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.85 E-value=7.5e-21 Score=190.20 Aligned_cols=263 Identities=18% Similarity=0.192 Sum_probs=135.3
Q ss_pred HHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHH---HHHHHhCCCC
Q 010572 214 QALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVE---LVSFLSSGRS 290 (507)
Q Consensus 214 ~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~---L~~~L~~~~s 290 (507)
+.+.+.+ ....++++++|++|.|+.++++.++..|++.+ .+..-.++. -|+.--...++.. +.++|..++.
T Consensus 20 ~~v~~~~-~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~----~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~ 93 (382)
T KOG1909|consen 20 KDVEEEL-EPMDSLTKLDLSGNTFGTEAARAIAKVLASKK----ELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPK 93 (382)
T ss_pred hhHHHHh-cccCceEEEeccCCchhHHHHHHHHHHHhhcc----cceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCc
Confidence 3334433 34467777777777777777777777766542 122211111 1111111112221 4556666777
Q ss_pred CCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-c-----ccCCchhhcccCCCcCccccccch---
Q 010572 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-Y-----DRSGPLFSLGAGKSLQSLRLLNLS--- 361 (507)
Q Consensus 291 L~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~-----~~~~l~~~L~~~~~L~~L~ll~l~--- 361 (507)
|++||||+|.++..|++.+..-+ .+...|+.|.|.+|+++..... + .+- .....++-..|+.+...+|+
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll-~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~-~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELL-SSCTDLEELYLNNCGLGPEAGGRLGRALFELA-VNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred eeEeeccccccCccchHHHHHHH-HhccCHHHHhhhcCCCChhHHHHHHHHHHHHH-HHhccCCCcceEEEEeecccccc
Confidence 77777777777777777665544 3457777777777777721110 0 000 00012223334444444444
Q ss_pred hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 362 HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 362 ~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
.++.+++..++ .+|+++.++.|+|.+.|...++.++..+++|++|||.+|.++.+|...|+.+++..+.|++|+++++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 34444444444 3555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHc
Q 010572 440 LMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHN 486 (507)
Q Consensus 440 ~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~ 486 (507)
.+.++|+..+.+|++...++|+.|+|.+|. |+.+++..++.....
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe--It~da~~~la~~~~e 296 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNE--ITRDAALALAACMAE 296 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcch--hHHHHHHHHHHHHhc
Confidence 555555555555555444455555555554 244444444433333
No 2
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.85 E-value=1.3e-20 Score=188.42 Aligned_cols=278 Identities=18% Similarity=0.197 Sum_probs=213.4
Q ss_pred cCCcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCC---h---hHHHHHHHHhccCCcccccccceeccccc
Q 010572 196 ESKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLS---P---SFVEGICRSLCSKRKRIHKIENLSIDISS 268 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls---~---~~~~~L~~~L~~~~~~~~~l~~L~l~~~~ 268 (507)
...+++++|++|.+ .+..+.+++.+. +.+.|++.++++...+ + +++..+..+|...+ .++.++++.|.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~-~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~----~L~~ldLSDNA 103 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLA-SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP----KLQKLDLSDNA 103 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHh-hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC----ceeEeeccccc
Confidence 44678888887754 344455677765 4468888888876433 2 23344455554321 57788877766
Q ss_pred cccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhcc--------CCCCccEEECcCCCCCCcccccccC
Q 010572 269 FIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE--------ASSSLSILDLSGNSIGGWLSKYDRS 340 (507)
Q Consensus 269 ~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~--------~~~~L~~LdLS~N~L~~~l~~~~~~ 340 (507)
|.. +....+..+|+++.+|++|.|+||.|+..|...++.+|.+ .-+.|++++..+|.+....+.
T Consensus 104 ~G~----~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~---- 175 (382)
T KOG1909|consen 104 FGP----KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT---- 175 (382)
T ss_pred cCc----cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH----
Confidence 532 1224567788888899999999999999988888776632 337888899999988853322
Q ss_pred CchhhcccCCCcCccccccch---hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCCh
Q 010572 341 GPLFSLGAGKSLQSLRLLNLS---HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGV 415 (507)
Q Consensus 341 ~l~~~L~~~~~L~~L~ll~l~---~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~ 415 (507)
.++.++...+.|+.++...|+ .+..++..++. ++|++|||++|.++.+|..+|+++|+..+.|++|+++++.+..
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 234467777788888887776 56666777666 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC-CCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 416 ETAKFLSKLMPL-APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 416 ~g~~~L~~~L~~-n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
+|+..+.++++. +|+|+.|++++|.|+.+|+..++.++.. .+.|++|+|++|.++.++++...++..-...
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l~e~de~i~ei~~~~~~~ 327 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRLGEKDEGIDEIASKFDTA 327 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccccccchhHHHHHHhcccc
Confidence 999999988765 5789999999999999999999988876 6799999999999987888888887766443
No 3
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.85 E-value=3e-19 Score=181.08 Aligned_cols=273 Identities=22% Similarity=0.204 Sum_probs=174.3
Q ss_pred CcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCC--hhHHHHHHHHhccCCcccccccceeccccccccCCC
Q 010572 198 KLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLS--PSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (507)
Q Consensus 198 ~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls--~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~ 274 (507)
.|++|+++++.. +.++..++..+. ..++|++|+++++.++ +..+..+...+... ..++.|+++.+.+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~~~~--- 95 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG----CGLQELDLSDNALGP--- 95 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc----CceeEEEccCCCCCh---
Confidence 366777766543 333444444432 4466777777777776 45555554444431 346677766555421
Q ss_pred CcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCc
Q 010572 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (507)
Q Consensus 275 ~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~ 354 (507)
..+..+...... ++|++|++++|.+++.++..++..+....++|++|+|++|.|++.... .+...+..+..|++
T Consensus 96 -~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~----~~~~~~~~~~~L~~ 169 (319)
T cd00116 96 -DGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE----ALAKALRANRDLKE 169 (319)
T ss_pred -hHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH----HHHHHHHhCCCcCE
Confidence 112223333333 667888888887777777666666543226778888888877742110 01123444555666
Q ss_pred cccccch---hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCC-C
Q 010572 355 LRLLNLS---HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPL-A 428 (507)
Q Consensus 355 L~ll~l~---~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~-n 428 (507)
|.+.++. .+...++.++. ++|++|+|++|.+++.+...++..+..+.+|++|++++|.+++.+...++..+.. +
T Consensus 170 L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 170 LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred EECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 6665554 23344444443 6788888888888888888888888878888888888888888777777765543 4
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 429 PELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 429 ~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
+.|++|++++|.++++|+..+.+++... .+|+.+++++|.+ ++++++.+++..+..
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l--~~~~~~~~~~~~~~~ 305 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKF--GEEGAQLLAESLLEP 305 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCC--cHHHHHHHHHHHhhc
Confidence 5688888888888888888888887765 6788888888885 777777776555543
No 4
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.84 E-value=2.6e-19 Score=181.58 Aligned_cols=237 Identities=20% Similarity=0.229 Sum_probs=160.4
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
..+|++|+++++.........+..+..+ ++|++|++++|.+++.++..+...+... ...++.|+++.+.+..
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~---~~~L~~L~L~~n~l~~---- 151 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDL---PPALEKLVLGRNRLEG---- 151 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhC---CCCceEEEcCCCcCCc----
Confidence 4456666666554332222223333333 4566666666666665555555444332 0135555555544321
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
.....+...+..+++|++|+|++|.+++.+...++.++... ++|++|+|++|.|++
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~----------------------- 207 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTD----------------------- 207 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccCh-----------------------
Confidence 01112344455556666666666666666655555555333 566666666666553
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcC-CCCCCEEeccCCCCChHHHHHHHhhCCCCCCcc
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNRGGVETAKFLSKLMPLAPELV 432 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~-n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~ 432 (507)
.+...++..+. .+|++|++++|.+++.+...++..+.. +..|++|++++|.+++.+...+.+.+...++|+
T Consensus 208 ------~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~ 281 (319)
T cd00116 208 ------EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281 (319)
T ss_pred ------HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc
Confidence 23334444443 789999999999999999999987764 678999999999999999999999998889999
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 433 EVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 433 ~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+++++|.++++|++.++.+++.+.+.|+.||+.+|.|
T Consensus 282 ~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 282 ELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred EEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99999999999999999999999888999999999875
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.71 E-value=3.2e-17 Score=191.15 Aligned_cols=303 Identities=19% Similarity=0.180 Sum_probs=174.4
Q ss_pred hhhhhhhhhhhhhhhccCCcccccchhhhhccchhhcccccccccccccceecccCceeEEEEeccCcchhhhh-hhhcc
Q 010572 118 GCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETC-QLLRE 196 (507)
Q Consensus 118 ~cl~E~~e~~~~~~~~~~l~di~~~~~~l~~~~~~~~~~c~~~~l~~l~~~c~~~~~~v~~L~L~~~l~~~~~~-~ll~~ 196 (507)
+|+....|++++..|+.++.+ |...+.+|+ ...+||.| -++.|... ++|+.|+|....-.+.+. .+...
T Consensus 23 ~~~~~~~~~~~l~~~~~~~~~---~~~~~~~w~-~~~~~c~w-----~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l 92 (968)
T PLN00113 23 FSMLHAEELELLLSFKSSIND---PLKYLSNWN-SSADVCLW-----QGITCNNS-SRVVSIDLSGKNISGKISSAIFRL 92 (968)
T ss_pred ccCCCHHHHHHHHHHHHhCCC---CcccCCCCC-CCCCCCcC-----cceecCCC-CcEEEEEecCCCccccCChHHhCC
Confidence 455556899999999998876 767788895 34589999 37888753 479999997532122222 34456
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..|+.|+|+++.....+ -..+..++.+|++|+|++|.+++..+... ...++.|+++.+.+..
T Consensus 93 ~~L~~L~Ls~n~~~~~i---p~~~~~~l~~L~~L~Ls~n~l~~~~p~~~----------l~~L~~L~Ls~n~~~~----- 154 (968)
T PLN00113 93 PYIQTINLSNNQLSGPI---PDDIFTTSSSLRYLNLSNNNFTGSIPRGS----------IPNLETLDLSNNMLSG----- 154 (968)
T ss_pred CCCCEEECCCCccCCcC---ChHHhccCCCCCEEECcCCccccccCccc----------cCCCCEEECcCCcccc-----
Confidence 78999999987543221 12233466889999999998876544211 1246666666554321
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-cc------------cC---
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-YD------------RS--- 340 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~~------------~~--- 340 (507)
.+...+..+++|++|+|++|.+.......+ ...++|++|+|++|.+++.++. +. +.
T Consensus 155 ---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 155 ---EIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-----TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred ---cCChHHhcCCCCCEEECccCcccccCChhh-----hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 122334556666666666666654433322 2235666666666666543321 00 00
Q ss_pred CchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHH
Q 010572 341 GPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETA 418 (507)
Q Consensus 341 ~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~ 418 (507)
.+...++...+|++|.+.++. ..+.++..+. ++|++|+|++|.+.... ...+....+|++|+|++|.++...+
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPI----PPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred cCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccC----chhHhhccCcCEEECcCCeeccCCC
Confidence 000123334444444444432 2222333333 56677777766664321 1223334567777777777765544
Q ss_pred HHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 419 KFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 419 ~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
..+. ..++|+.|++++|.+....... +.. ..+|+.|+|++|.+
T Consensus 302 ~~~~----~l~~L~~L~l~~n~~~~~~~~~----~~~-l~~L~~L~L~~n~l 344 (968)
T PLN00113 302 ELVI----QLQNLEILHLFSNNFTGKIPVA----LTS-LPRLQVLQLWSNKF 344 (968)
T ss_pred hhHc----CCCCCcEEECCCCccCCcCChh----Hhc-CCCCCEEECcCCCC
Confidence 4333 3467888888888876543322 222 25688888888886
No 6
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.56 E-value=1.3e-14 Score=141.45 Aligned_cols=274 Identities=15% Similarity=0.199 Sum_probs=182.9
Q ss_pred hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHH---HHHHHh
Q 010572 210 EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVE---LVSFLS 286 (507)
Q Consensus 210 ~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~---L~~~L~ 286 (507)
..+.++....+.. +..++++|||+|.|+.+++..||..+.... .+..-.++. -|+....-.+... +..+|.
T Consensus 16 ~eDvk~v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~----~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLl 89 (388)
T COG5238 16 KEDVKGVVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVR----NLRVVNFSD-AFTGRDKDELYSNLVMLLKALL 89 (388)
T ss_pred cchhhHHHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhc----ceeEeehhh-hhhcccHHHHHHHHHHHHHHHh
Confidence 3466666666654 578999999999999999999998876532 111111111 1111111112222 467788
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCccc-ccccC--Cchh--hcccCCCcCccccccch
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLS-KYDRS--GPLF--SLGAGKSLQSLRLLNLS 361 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~-~~~~~--~l~~--~L~~~~~L~~L~ll~l~ 361 (507)
.||.|+..+||+|.++.+....+.+.+- ..+.|..|.|++|+++.... ++... .++. -..+.+.|++.....|+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is-~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLIS-SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHh-cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 8999999999999999999988887664 45899999999999983211 00000 0000 12233446666666665
Q ss_pred --hHHHH-HHhhhc--CCCcEEEeccCCCCchhHHHHHH-hhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 362 --HIAAS-LGKFFG--TSVQVLNIGAIGLGSSGFRVLQD-GVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 362 --~~~~~-L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~-aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
.|... .+..+. ..|+++.+..|+|.++|+..|+- ++....+|++|||.+|.++-.|...|+.++...+.|++|+
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 22222 233333 47889999999999999877664 5666788999999999999999999999998888889999
Q ss_pred ccCCCCChhHHHHHHHHHhcC-CCCccEEEecCCCCC-----------CCccHHHHHHHHHHcCCCe
Q 010572 436 AGYNLMPLESLTIICSALKVA-KGHLQRLDLTGNNWE-----------LQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 436 Ls~N~l~~~g~~~L~~aL~~~-~~~L~~LdL~~N~~~-----------~~~~~~~~l~~~~~~~~~i 490 (507)
+..|.++.+|+...-.+...- .++|..|-+..|... ...+.++.|..++.||.-|
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 999999999988777666442 356777777666541 1234455666666666554
No 7
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.54 E-value=3.1e-15 Score=160.74 Aligned_cols=280 Identities=19% Similarity=0.145 Sum_probs=223.9
Q ss_pred cCeeeccccc-ChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcc
Q 010572 199 LQSLVLRWIR-FEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (507)
Q Consensus 199 L~~L~Ls~~~-~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l 277 (507)
+..|.|.++. .+.+++.++.++.++ .+|+.|+|++|.++++++..++..++.+. +.++.|.+..+.....++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~-~~L~~L~l~~n~l~~~g~~~l~~~l~~~~---~~l~~L~l~~c~l~~~g~--- 161 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL-PTLGQLDLSGNNLGDEGARLLCEGLRLPQ---CLLQTLELVSCSLTSEGA--- 161 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc-ccHhHhhcccCCCccHhHHHHHhhcccch---HHHHHHHhhcccccccch---
Confidence 4555665553 345777788888655 79999999999999999999999999873 356667666555433222
Q ss_pred hHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhcc---CCCCccEEECcCCCCCCcccccccCCchhhcccCCC-cC
Q 010572 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLE---ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS-LQ 353 (507)
Q Consensus 278 ~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~---~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~-L~ 353 (507)
..++..|.++.+++.+|++.|.+...|...++.++.. +.+++++|.|++|.++. ..|..+..++....+ +.
T Consensus 162 -~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~----~~c~~l~~~l~~~~~~~~ 236 (478)
T KOG4308|consen 162 -APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTS----SSCALLDEVLASGESLLR 236 (478)
T ss_pred -HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcCh----HHHHHHHHHHhccchhhH
Confidence 2367788889999999999999999999999999986 77999999999999995 345555567766665 55
Q ss_pred ccccccch---hHHHHHHhhhc---CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhh---
Q 010572 354 SLRLLNLS---HIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKL--- 424 (507)
Q Consensus 354 ~L~ll~l~---~~~~~L~~~l~---~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~--- 424 (507)
.|++..|. .++..+...+. +++++++++.|.|++.|+..+++.+.....++.|.+++|.+++.++..+.+.
T Consensus 237 el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~ 316 (478)
T KOG4308|consen 237 ELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALER 316 (478)
T ss_pred HHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhh
Confidence 56666665 56778877775 6899999999999999999999999888899999999999999877665211
Q ss_pred --------------------------------------------------------------------------------
Q 010572 425 -------------------------------------------------------------------------------- 424 (507)
Q Consensus 425 -------------------------------------------------------------------------------- 424 (507)
T Consensus 317 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 396 (478)
T KOG4308|consen 317 KTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRL 396 (478)
T ss_pred cccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHh
Confidence
Q ss_pred ---CCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCeEEc
Q 010572 425 ---MPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILIL 493 (507)
Q Consensus 425 ---L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i~~~ 493 (507)
+..++.+.+++++.|...+++...+.+..+.+. .++.++++.|.+ ...+...+.+..+.++.|..+
T Consensus 397 ~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 465 (478)
T KOG4308|consen 397 AAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPI--TALGTEELQRALALNPGILAI 465 (478)
T ss_pred hhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChh--hhcchHHHHHHHhcCCCccee
Confidence 123667899999999999999999999999987 899999999984 777788888888888777544
No 8
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.50 E-value=8.8e-15 Score=157.20 Aligned_cols=255 Identities=19% Similarity=0.189 Sum_probs=186.6
Q ss_pred CCccEEEeecCCCChhH---HHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCC
Q 010572 225 ETLASLEFLHCKLSPSF---VEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHL 301 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~---~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L 301 (507)
+.++++.+.++..++.. ....+..+..+......+..+++..|.+.+- -...+++++..+++|..|+|+.|.+
T Consensus 52 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~----~~~~l~~~l~t~~~L~~L~l~~n~l 127 (478)
T KOG4308|consen 52 TTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDR----GAEELAQALKTLPTLGQLDLSGNNL 127 (478)
T ss_pred cchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccc----hHHHHHHHhcccccHhHhhcccCCC
Confidence 46677777777777666 2223344443321000144555554443221 1234788899999999999999999
Q ss_pred CchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch---hHHHHHHhhh------c
Q 010572 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS---HIAASLGKFF------G 372 (507)
Q Consensus 302 ~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~---~~~~~L~~~l------~ 372 (507)
++.|++.++.++..+.|.+++|++..|.+++. .+..+...+..+..++.+.+..|. .+...+++++ .
T Consensus 128 ~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~----g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~ 203 (478)
T KOG4308|consen 128 GDEGARLLCEGLRLPQCLLQTLELVSCSLTSE----GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPL 203 (478)
T ss_pred ccHhHHHHHhhcccchHHHHHHHhhccccccc----chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhccc
Confidence 99999999999988778999999999999863 333445566666667666666554 2333333332 2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCC-CCEEeccCCCCChHHHHHHHhhCCCC-CCccEEEccCCCCChhHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELK-LVNINISKNRGGVETAKFLSKLMPLA-PELVEVNAGYNLMPLESLTIIC 450 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~-L~~LdLs~N~i~~~g~~~L~~~L~~n-~~L~~L~Ls~N~l~~~g~~~L~ 450 (507)
++++.|+|..|.+++.+|..++.++..... ++.|+++.|.+++.|++.+...+... +++++++++.|.|++.|+..++
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 788999999999999999999999988766 88899999999999999999888776 6789999999999999999999
Q ss_pred HHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCe
Q 010572 451 SALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 451 ~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i 490 (507)
+.+.... .++.|.++.|.+ ++.++..+.+..+...+.
T Consensus 284 ~~l~~~~-~l~~l~l~~n~l--~~~~~~~~~~~l~~~~~~ 320 (478)
T KOG4308|consen 284 EVLVSCR-QLEELSLSNNPL--TDYGVELLLEALERKTPL 320 (478)
T ss_pred HHHhhhH-HHHHhhcccCcc--ccHHHHHHHHHhhhcccc
Confidence 9888764 899999999885 777777776666665555
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.46 E-value=1.6e-13 Score=160.13 Aligned_cols=235 Identities=19% Similarity=0.140 Sum_probs=105.8
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..|++|+++++.... ..+.-++++.+|++|+|++|.+.+..+..+.. + ..++.|+++.|.+..
T Consensus 140 ~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l-------~~L~~L~L~~n~l~~----- 202 (968)
T PLN00113 140 PNLETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-L-------TSLEFLTLASNQLVG----- 202 (968)
T ss_pred CCCCEEECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhhh-C-------cCCCeeeccCCCCcC-----
Confidence 456666666553221 11222345566666666666665444433311 1 234555554443211
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-cc-cC--------------
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-YD-RS-------------- 340 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~~-~~-------------- 340 (507)
.+...+..+++|++|+|++|.+.+.....+ ...++|++|+|++|.+++.++. +. ..
T Consensus 203 ---~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 203 ---QIPRELGQMKSLKWIYLGYNNLSGEIPYEI-----GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ---cCChHHcCcCCccEEECcCCccCCcCChhH-----hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 112234445555555555555554433322 1235555555555555443221 00 00
Q ss_pred CchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHH
Q 010572 341 GPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETA 418 (507)
Q Consensus 341 ~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~ 418 (507)
.+...+....+|++|.+.++. ..+.++..+. .+|+.|++++|.++... ...+....+|++|+|++|.++...+
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNS-LSGEIPELVIQLQNLEILHLFSNNFTGKI----PVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred cCchhHhhccCcCEEECcCCe-eccCCChhHcCCCCCcEEECCCCccCCcC----ChhHhcCCCCCEEECcCCCCcCcCC
Confidence 000022233334444443332 1122222222 45666666666554321 1223334456666666666654444
Q ss_pred HHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 419 KFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 419 ~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
..+. ..++|+.|++++|.+.......++ . ..+|+.|++++|.+
T Consensus 350 ~~l~----~~~~L~~L~Ls~n~l~~~~p~~~~----~-~~~L~~L~l~~n~l 392 (968)
T PLN00113 350 KNLG----KHNNLTVLDLSTNNLTGEIPEGLC----S-SGNLFKLILFSNSL 392 (968)
T ss_pred hHHh----CCCCCcEEECCCCeeEeeCChhHh----C-cCCCCEEECcCCEe
Confidence 3332 235667777777766543222222 1 24577777777765
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.20 E-value=1.3e-12 Score=138.44 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=35.4
Q ss_pred CceeEEEEeccCc-chhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCCh
Q 010572 173 GHYARCLRLQNAL-CVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSP 239 (507)
Q Consensus 173 ~~~v~~L~L~~~l-~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~ 239 (507)
.+|+..|.|+.-+ .+....++.....|++||||.|.... ++ -+.+ ..-.++++|+|++|.++.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~-i~--~~sf-p~~~ni~~L~La~N~It~ 187 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE-IP--KPSF-PAKVNIKKLNLASNRITT 187 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc-cc--CCCC-CCCCCceEEeeccccccc
Confidence 4578999998533 22222244445567888888773211 00 0011 111478888888888764
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.19 E-value=1.2e-11 Score=131.27 Aligned_cols=41 Identities=32% Similarity=0.285 Sum_probs=26.7
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
.+..+|..|.|++|.++.-..+. ++..+.|+.|||..|.|.
T Consensus 194 ~~lnsL~tlkLsrNrittLp~r~-----Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 194 DSLNSLLTLKLSRNRITTLPQRS-----FKRLPKLESLDLNRNRIR 234 (873)
T ss_pred cccchheeeecccCcccccCHHH-----hhhcchhhhhhcccccee
Confidence 34447777777777776655543 234577777777777765
No 12
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.19 E-value=8.2e-11 Score=115.14 Aligned_cols=197 Identities=19% Similarity=0.186 Sum_probs=118.7
Q ss_pred HHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-c--ccCCchhhcccCCCcCcccc
Q 010572 281 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-Y--DRSGPLFSLGAGKSLQSLRL 357 (507)
Q Consensus 281 L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~--~~~~l~~~L~~~~~L~~L~l 357 (507)
....+....++++++||+|-++.+.++.+|..+.. -.+|+...+|.-..+ .... + +-..+..++..|+.|...++
T Consensus 22 v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~-~~~L~vvnfsd~ftg-r~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 22 VVEELEMMDELVEVDLSGNTIGTEAMEELCNVIAN-VRNLRVVNFSDAFTG-RDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhh-hcceeEeehhhhhhc-ccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 34556667888888888888888888888877743 366666666644332 1100 0 00112235666777777777
Q ss_pred ccch---hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhc---CC------CCCCEEeccCCCCChHHHHHHHh
Q 010572 358 LNLS---HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVT---KE------LKLVNINISKNRGGVETAKFLSK 423 (507)
Q Consensus 358 l~l~---~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~---~n------~~L~~LdLs~N~i~~~g~~~L~~ 423 (507)
.+|. .....|..+++ +.|.+|.|++|++|+.+...|++||. .| +.|++.+.+.|++..-.++..+.
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence 7775 34445555555 66788888888888777777776642 12 23777777777766555555555
Q ss_pred hCCCCCCccEEEccCCCCChhHHHHHH-HHHhcCCCCccEEEecCCCCCCCccHHHHHHH
Q 010572 424 LMPLAPELVEVNAGYNLMPLESLTIIC-SALKVAKGHLQRLDLTGNNWELQPSHVSMLSE 482 (507)
Q Consensus 424 ~L~~n~~L~~L~Ls~N~l~~~g~~~L~-~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~ 482 (507)
.+....+|+++.+.+|.|.++|+..|+ ..+.- ..+|+.|||..|.| +-.|...|+.
T Consensus 180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtf--t~~gS~~La~ 236 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTF--TLEGSRYLAD 236 (388)
T ss_pred HHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccch--hhhhHHHHHH
Confidence 555555666666666666666666554 22222 23566666666664 4444444433
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.97 E-value=3.1e-11 Score=128.76 Aligned_cols=178 Identities=18% Similarity=0.178 Sum_probs=107.3
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIA 364 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~ 364 (507)
..+++.|-+||||+|.|..-.+.+ .....|++|+||+|.+.- +-+...+++++|.++..+.-.
T Consensus 146 finLtDLLfLDLS~NrLe~LPPQ~------RRL~~LqtL~Ls~NPL~h-----------fQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 146 FINLTDLLFLDLSNNRLEMLPPQI------RRLSMLQTLKLSNNPLNH-----------FQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred HHhhHhHhhhccccchhhhcCHHH------HHHhhhhhhhcCCChhhH-----------HHHhcCccchhhhhhhccccc
Confidence 345566777777777775544432 123667788888887752 134556667777776665211
Q ss_pred ---HHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 365 ---ASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 365 ---~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
..++..+. .+|..+|||.|.+.- +.+++-...+|+.||||+|.|+.-.+ ......+|++||||.|
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL~~-----~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNLPI-----VPECLYKLRNLRRLNLSGNKITELNM-----TEGEWENLETLNLSRN 278 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCCCc-----chHHHhhhhhhheeccCcCceeeeec-----cHHHHhhhhhhccccc
Confidence 22223332 678888999988863 44556667789999999999875321 1112246899999999
Q ss_pred CCChhHHHHHHHHHhcCCCCccEEEecCCCC---CCCccHHHHH--HHHHHcCCCeEEcCC
Q 010572 440 LMPLESLTIICSALKVAKGHLQRLDLTGNNW---ELQPSHVSML--SEFRHNGLPILILPT 495 (507)
Q Consensus 440 ~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~---~~~~~~~~~l--~~~~~~~~~i~~~~~ 495 (507)
+++.-- .|+-. -++|++|.+..|.+ +|++.+.++. ..|...+..+-.+|-
T Consensus 279 QLt~LP-----~avcK-L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE 333 (1255)
T KOG0444|consen 279 QLTVLP-----DAVCK-LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE 333 (1255)
T ss_pred hhccch-----HHHhh-hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch
Confidence 987311 11211 13577777777776 4566555543 555555444444443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.68 E-value=8.1e-09 Score=114.99 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=79.8
Q ss_pred CCCcEEEeccCCCCchhHHHHHHh----------------hcC-----CCCCCEEeccCCCCChHHHHHHHhhCCCCCCc
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDG----------------VTK-----ELKLVNINISKNRGGVETAKFLSKLMPLAPEL 431 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~a----------------L~~-----n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L 431 (507)
.+|++|+|..|.|.+---..++.. ++. ...|+.|.+.+|.+++.....|- ..+.|
T Consensus 310 ~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~----~~~hL 385 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV----NFKHL 385 (1081)
T ss_pred ceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc----cccce
Confidence 778999999999876433322211 110 11288899999999998776664 34689
Q ss_pred cEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC-CCCccHHH--HHHHHHHcCCCeEEcCCC
Q 010572 432 VEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW-ELQPSHVS--MLSEFRHNGLPILILPTL 496 (507)
Q Consensus 432 ~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~-~~~~~~~~--~l~~~~~~~~~i~~~~~~ 496 (507)
+.|+|++|.|+.--.. .++ +-..|++|+|+||.+ .+++..+. .|.-+.+++..|++.|-.
T Consensus 386 KVLhLsyNrL~~fpas----~~~-kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~ 448 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPAS----KLR-KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPEL 448 (1081)
T ss_pred eeeeecccccccCCHH----HHh-chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhh
Confidence 9999999988732221 222 235689999999998 45555544 678888999899888843
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.66 E-value=6.1e-08 Score=109.90 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=61.6
Q ss_pred CcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCC
Q 010572 351 SLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPE 430 (507)
Q Consensus 351 ~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~ 430 (507)
+|+.|.+.+|. + ..++..+..+|+.|+|++|.|+.. ...++ .+|++|+|++|.++.- +..+. +.
T Consensus 326 sL~~L~Ls~N~-L-t~LP~~l~~sL~~L~Ls~N~L~~L-----P~~lp--~~L~~LdLs~N~Lt~L-P~~l~------~s 389 (754)
T PRK15370 326 GLKTLEAGENA-L-TSLPASLPPELQVLDVSKNQITVL-----PETLP--PTITTLDVSRNALTNL-PENLP------AA 389 (754)
T ss_pred cceeccccCCc-c-ccCChhhcCcccEEECCCCCCCcC-----Chhhc--CCcCEEECCCCcCCCC-CHhHH------HH
Confidence 45666655553 1 113333346889999999888642 22232 4689999999988632 22221 24
Q ss_pred ccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 431 LVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 431 L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+.|++++|.|..-- ..+...+ ....++..|+|.+|.+
T Consensus 390 L~~LdLs~N~L~~LP-~sl~~~~-~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 390 LQIMQASRNNLVRLP-ESLPHFR-GEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHhhccCCcccCc-hhHHHHh-hcCCCccEEEeeCCCc
Confidence 888899999886311 1122222 2235788999999997
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.65 E-value=1.3e-07 Score=107.10 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=17.3
Q ss_pred CCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 290 sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
+|+.|+|++|+|..-.. ..++|+.|+|++|.|++
T Consensus 283 ~L~~L~Ls~N~Lt~LP~---------~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV---------LPPGLQELSVSDNQLAS 316 (788)
T ss_pred hcCEEECcCCccccccc---------cccccceeECCCCcccc
Confidence 45556666665543211 11456666666665553
No 17
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=8.3e-08 Score=95.43 Aligned_cols=200 Identities=19% Similarity=0.191 Sum_probs=130.3
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCC-CCCc
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HLDR 303 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N-~L~~ 303 (507)
..|++||||...++...+..+++. ..+++.|++.++++- ..++..+..|.+|..||||.+ +++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~-------C~kLk~lSlEg~~Ld--------D~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQ-------CSKLKNLSLEGLRLD--------DPIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHH-------HHhhhhccccccccC--------cHHHHHHhccccceeeccccccccch
Confidence 468999999998887777666432 235677776665532 246777888999999999874 5777
Q ss_pred hHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccC
Q 010572 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAI 383 (507)
Q Consensus 304 ~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n 383 (507)
.+++.+ +.+.+.|.+|+||+|.++... +.++...++.+|..|||+++
T Consensus 250 n~~~ll----~~scs~L~~LNlsWc~l~~~~-----------------------------Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 250 NALQLL----LSSCSRLDELNLSWCFLFTEK-----------------------------VTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred hHHHHH----HHhhhhHhhcCchHhhccchh-----------------------------hhHHHhhhchhhhhhhhhhh
Confidence 777654 345678899999998887421 12233444577888888876
Q ss_pred C--CCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCc
Q 010572 384 G--LGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHL 460 (507)
Q Consensus 384 ~--l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L 460 (507)
. ++.. .++-.......|.+||||+|. +++..+..+- +.+.|++|.++.+-.=+.- .+-+ +. ..++|
T Consensus 297 rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~----kf~~L~~lSlsRCY~i~p~--~~~~-l~-s~psl 365 (419)
T KOG2120|consen 297 RRNLQKS---HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF----KFNYLQHLSLSRCYDIIPE--TLLE-LN-SKPSL 365 (419)
T ss_pred Hhhhhhh---HHHHHHHhCCceeeeccccccccCchHHHHHH----hcchheeeehhhhcCCChH--Heee-ec-cCcce
Confidence 5 3332 444444567789999999864 6664444443 3367999999977653321 1111 22 24689
Q ss_pred cEEEecCCCCCCCccHHHHHHHHHHc
Q 010572 461 QRLDLTGNNWELQPSHVSMLSEFRHN 486 (507)
Q Consensus 461 ~~LdL~~N~~~~~~~~~~~l~~~~~~ 486 (507)
.+||..|+- ++....++.+...+
T Consensus 366 ~yLdv~g~v---sdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 366 VYLDVFGCV---SDTTMELLKEMLSH 388 (419)
T ss_pred EEEEecccc---CchHHHHHHHhCcc
Confidence 999998874 55556666665554
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.63 E-value=8.1e-08 Score=108.74 Aligned_cols=127 Identities=21% Similarity=0.206 Sum_probs=76.6
Q ss_pred CCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhh
Q 010572 318 SSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGV 397 (507)
Q Consensus 318 ~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL 397 (507)
.+|+.|+|++|.|++ ++. . ..+|+.|.+.+|. +. .++.. ...|+.|+|++|.|+.... +
T Consensus 342 ~~Lq~LdLS~N~Ls~-LP~--------l---p~~L~~L~Ls~N~-L~-~LP~l-~~~L~~LdLs~N~Lt~LP~------l 400 (788)
T PRK15387 342 SGLQELSVSDNQLAS-LPT--------L---PSELYKLWAYNNR-LT-SLPAL-PSGLKELIVSGNRLTSLPV------L 400 (788)
T ss_pred cccceEecCCCccCC-CCC--------C---Ccccceehhhccc-cc-cCccc-ccccceEEecCCcccCCCC------c
Confidence 467888888888774 111 0 1234455554443 11 12221 2578999999999874221 1
Q ss_pred cCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHH
Q 010572 398 TKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHV 477 (507)
Q Consensus 398 ~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~ 477 (507)
..+|+.|++++|.++.- +. . ..+|+.|++++|.|+. |.+.+.. ..+|+.|+|++|.+ .....
T Consensus 401 --~s~L~~LdLS~N~LssI-P~----l---~~~L~~L~Ls~NqLt~-----LP~sl~~-L~~L~~LdLs~N~L--s~~~~ 462 (788)
T PRK15387 401 --PSELKELMVSGNRLTSL-PM----L---PSGLLSLSVYRNQLTR-----LPESLIH-LSSETTVNLEGNPL--SERTL 462 (788)
T ss_pred --ccCCCEEEccCCcCCCC-Cc----c---hhhhhhhhhccCcccc-----cChHHhh-ccCCCeEECCCCCC--CchHH
Confidence 24699999999998631 11 1 1358889999999983 2233332 25799999999997 44444
Q ss_pred HHHHHH
Q 010572 478 SMLSEF 483 (507)
Q Consensus 478 ~~l~~~ 483 (507)
..+.+.
T Consensus 463 ~~L~~l 468 (788)
T PRK15387 463 QALREI 468 (788)
T ss_pred HHHHHH
Confidence 444443
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.58 E-value=5.4e-09 Score=111.92 Aligned_cols=251 Identities=21% Similarity=0.228 Sum_probs=124.9
Q ss_pred hhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceecccccccc
Q 010572 192 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIE 271 (507)
Q Consensus 192 ~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le 271 (507)
.+.....|+.||||.|. ....-..+ ...+++-.|+||+|++. .++..++-.|. .+-.|+++.+++ +
T Consensus 98 diF~l~dLt~lDLShNq----L~EvP~~L-E~AKn~iVLNLS~N~Ie-tIPn~lfinLt-------DLLfLDLS~NrL-e 163 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQ----LREVPTNL-EYAKNSIVLNLSYNNIE-TIPNSLFINLT-------DLLFLDLSNNRL-E 163 (1255)
T ss_pred hhcccccceeeecchhh----hhhcchhh-hhhcCcEEEEcccCccc-cCCchHHHhhH-------hHhhhccccchh-h
Confidence 45667788889998873 32222222 34478889999998874 34444544432 233455554442 2
Q ss_pred CCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEE-------------------------ECc
Q 010572 272 NCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSIL-------------------------DLS 326 (507)
Q Consensus 272 ~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~L-------------------------dLS 326 (507)
.+++. +..+..|+.|+||+|.|.-.-.+.+ ...++|+.| |||
T Consensus 164 ----~LPPQ----~RRL~~LqtL~Ls~NPL~hfQLrQL-----PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 164 ----MLPPQ----IRRLSMLQTLKLSNNPLNHFQLRQL-----PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred ----hcCHH----HHHHhhhhhhhcCCChhhHHHHhcC-----ccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 12333 2334456666677666654444332 112444444 444
Q ss_pred CCCCCCcccccccCCchhhcccCCCcCccccccch--hHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCC
Q 010572 327 GNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLV 404 (507)
Q Consensus 327 ~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~--~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~ 404 (507)
.|++.-. + ..+-...+|..|.+.+|. .+...... =.+|+.|+||.|+++. |..++....+|+
T Consensus 231 ~N~Lp~v-P--------ecly~l~~LrrLNLS~N~iteL~~~~~~--W~~lEtLNlSrNQLt~-----LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 231 ENNLPIV-P--------ECLYKLRNLRRLNLSGNKITELNMTEGE--WENLETLNLSRNQLTV-----LPDAVCKLTKLT 294 (1255)
T ss_pred ccCCCcc-h--------HHHhhhhhhheeccCcCceeeeeccHHH--Hhhhhhhccccchhcc-----chHHHhhhHHHH
Confidence 4444310 0 012222223333232222 00000000 0345555555555542 333344444566
Q ss_pred EEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC--hhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHH
Q 010572 405 NINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP--LESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSE 482 (507)
Q Consensus 405 ~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~--~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~ 482 (507)
.|.+.+|.++-+|. .+.+.+...|+++.+++|.+. ++| || . ...|++|.|+.|++=-=+++.-+|.+
T Consensus 295 kLy~n~NkL~FeGi---PSGIGKL~~Levf~aanN~LElVPEg---lc----R-C~kL~kL~L~~NrLiTLPeaIHlL~~ 363 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGI---PSGIGKLIQLEVFHAANNKLELVPEG---LC----R-CVKLQKLKLDHNRLITLPEAIHLLPD 363 (1255)
T ss_pred HHHhccCcccccCC---ccchhhhhhhHHHHhhccccccCchh---hh----h-hHHHHHhcccccceeechhhhhhcCC
Confidence 66666666555442 122333345777777777765 344 22 1 24799999999998223455556655
Q ss_pred HH----HcCCCeEEcCCC
Q 010572 483 FR----HNGLPILILPTL 496 (507)
Q Consensus 483 ~~----~~~~~i~~~~~~ 496 (507)
++ ++||.+|.+|-.
T Consensus 364 l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 364 LKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred cceeeccCCcCccCCCCc
Confidence 43 456677554443
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.5e-08 Score=105.00 Aligned_cols=203 Identities=17% Similarity=0.127 Sum_probs=107.6
Q ss_pred HHHHHHhcccCc---ccCCCC---CCcHHHHHHHHHHhhhhhhhhhhhhhhhhccCCcccccchhhhhccchhhcccccc
Q 010572 86 VWKKLFKTRWSG---FTDQIE---PVDWQQRYWEAHVQGCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHLA 159 (507)
Q Consensus 86 ~w~~~~~~~w~~---~~~~~~---~~~w~~~~~e~hl~~cl~E~~e~~~~~~~~~~l~di~~~~~~l~~~~~~~~~~c~~ 159 (507)
.|+|-|++|-|. +.+++- |.|..+.|-||.+++==+|+-+ +.+....+...| -+|.. .-..
T Consensus 49 dgk~YF~~q~P~GGSFik~~kV~~p~d~~~t~~ery~e~~s~~sd~-~~~~si~nK~vE---------~iGfD---ki~a 115 (505)
T KOG3207|consen 49 DGKRYFQTQHPNGGSFIKPGKVKFPTDLLRTFKERYYEKYSYSSDL-ESVLSISNKQVE---------FIGFD---KIAA 115 (505)
T ss_pred cceeeeeeecCCCccccCCccCCCCccHHHHHHHHHHHhhcCCcch-hhHhhhcCceeE---------EecHH---HHHH
Confidence 499999999999 788874 9999999999987765554333 222222111111 11111 0000
Q ss_pred cccccccceecccCceeEEEEeccCc--chhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCC
Q 010572 160 CDYSKLSYHCQQFGHYARCLRLQNAL--CVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKL 237 (507)
Q Consensus 160 ~~l~~l~~~c~~~~~~v~~L~L~~~l--~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~l 237 (507)
...++. .++.+.|++.- +.+.........+++.|||+.|.+. .|..++.. ...+++|+.|+|+.|.+
T Consensus 116 --------kQsn~k-kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i-~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 116 --------KQSNLK-KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKI-AEQLPSLENLNLSSNRL 184 (505)
T ss_pred --------HhhhHH-hhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHH-HHhcccchhcccccccc
Confidence 001111 25666666522 2221111223457889999988653 44455543 35678999999999875
Q ss_pred ChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCC
Q 010572 238 SPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS 317 (507)
Q Consensus 238 s~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~ 317 (507)
.--.-...-..+ ..++.|.+++|.+. .+++...+...|+|++|+|..|. +.+.+.... ...
T Consensus 185 ~~~~~s~~~~~l-------~~lK~L~l~~CGls-------~k~V~~~~~~fPsl~~L~L~~N~--~~~~~~~~~---~i~ 245 (505)
T KOG3207|consen 185 SNFISSNTTLLL-------SHLKQLVLNSCGLS-------WKDVQWILLTFPSLEVLYLEANE--IILIKATST---KIL 245 (505)
T ss_pred cCCccccchhhh-------hhhheEEeccCCCC-------HHHHHHHHHhCCcHHHhhhhccc--ccceecchh---hhh
Confidence 411110000001 11344444444431 23455566677777777777774 222211111 224
Q ss_pred CCccEEECcCCCCC
Q 010572 318 SSLSILDLSGNSIG 331 (507)
Q Consensus 318 ~~L~~LdLS~N~L~ 331 (507)
+.|++|||++|++-
T Consensus 246 ~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 246 QTLQELDLSNNNLI 259 (505)
T ss_pred hHHhhccccCCccc
Confidence 67777777777765
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.55 E-value=1.6e-07 Score=106.53 Aligned_cols=201 Identities=21% Similarity=0.255 Sum_probs=123.3
Q ss_pred CcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcc
Q 010572 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (507)
Q Consensus 198 ~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l 277 (507)
.++.|++++|.... +-..+. .+|++|+|++|.|+. .+..+. ..++.|.++.|.+.+ +
T Consensus 200 ~L~~L~Ls~N~Lts----LP~~l~---~nL~~L~Ls~N~Lts-LP~~l~----------~~L~~L~Ls~N~L~~-----L 256 (754)
T PRK15370 200 QITTLILDNNELKS----LPENLQ---GNIKTLYANSNQLTS-IPATLP----------DTIQEMELSINRITE-----L 256 (754)
T ss_pred CCcEEEecCCCCCc----CChhhc---cCCCEEECCCCcccc-CChhhh----------ccccEEECcCCccCc-----C
Confidence 57888888874332 211121 479999999998863 222211 136677777666432 3
Q ss_pred hHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcccc
Q 010572 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (507)
Q Consensus 278 ~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~l 357 (507)
+..+ .++|+.|+|++|+|..- .. .+ ..+|+.|+|++|.|+..-. .+. .+|+.|.+
T Consensus 257 P~~l------~s~L~~L~Ls~N~L~~L-P~----~l---~~sL~~L~Ls~N~Lt~LP~---------~lp--~sL~~L~L 311 (754)
T PRK15370 257 PERL------PSALQSLDLFHNKISCL-PE----NL---PEELRYLSVYDNSIRTLPA---------HLP--SGITHLNV 311 (754)
T ss_pred ChhH------hCCCCEEECcCCccCcc-cc----cc---CCCCcEEECCCCccccCcc---------cch--hhHHHHHh
Confidence 3332 14799999999998742 11 12 2579999999999885211 111 23555555
Q ss_pred ccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEcc
Q 010572 358 LNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAG 437 (507)
Q Consensus 358 l~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls 437 (507)
.+|. +. .++..+..+|+.|++++|.++.. ...++ .+|+.|+|++|.++. .+..+ .++|+.|+|+
T Consensus 312 s~N~-Lt-~LP~~l~~sL~~L~Ls~N~Lt~L-----P~~l~--~sL~~L~Ls~N~L~~-LP~~l------p~~L~~LdLs 375 (754)
T PRK15370 312 QSNS-LT-ALPETLPPGLKTLEAGENALTSL-----PASLP--PELQVLDVSKNQITV-LPETL------PPTITTLDVS 375 (754)
T ss_pred cCCc-cc-cCCccccccceeccccCCccccC-----Chhhc--CcccEEECCCCCCCc-CChhh------cCCcCEEECC
Confidence 5553 11 12222336799999999988743 22233 579999999999863 11111 1479999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 438 YNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 438 ~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+|.|..-- ..+. ..|+.|++++|.+
T Consensus 376 ~N~Lt~LP-----~~l~---~sL~~LdLs~N~L 400 (754)
T PRK15370 376 RNALTNLP-----ENLP---AALQIMQASRNNL 400 (754)
T ss_pred CCcCCCCC-----HhHH---HHHHHHhhccCCc
Confidence 99987421 1121 2588899999998
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.54 E-value=1.9e-08 Score=112.10 Aligned_cols=48 Identities=27% Similarity=0.392 Sum_probs=33.1
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC-CCCccHHHHH
Q 010572 428 APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW-ELQPSHVSML 480 (507)
Q Consensus 428 n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~-~~~~~~~~~l 480 (507)
.+.|+.+|+|.|+|+.-.+. +++. ..+||+|||+||.. ....+-.+.+
T Consensus 451 l~qL~~lDlS~N~L~~~~l~---~~~p--~p~LkyLdlSGN~~l~~d~~~l~~l 499 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLP---EALP--SPNLKYLDLSGNTRLVFDHKTLKVL 499 (1081)
T ss_pred cCcceEEecccchhhhhhhh---hhCC--CcccceeeccCCcccccchhhhHHh
Confidence 46799999999999864433 4443 36899999999985 3343334443
No 23
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.8e-07 Score=91.78 Aligned_cols=194 Identities=20% Similarity=0.191 Sum_probs=117.1
Q ss_pred CccEEEeecCCCChhHHHHHHHH----hccCC-------c------ccccccceeccccccccCCCCcchH-HHHHHHhC
Q 010572 226 TLASLEFLHCKLSPSFVEGICRS----LCSKR-------K------RIHKIENLSIDISSFIENCPSSVVV-ELVSFLSS 287 (507)
Q Consensus 226 ~L~~LdLs~~~ls~~~~~~L~~~----L~~~~-------~------~~~~l~~L~l~~~~~le~~~~~l~~-~L~~~L~~ 287 (507)
.=+.||+.+-.+.+.+..++.+. ++-+. . -...+|+++++.. .++. .+...|+.
T Consensus 137 lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s--------~it~stl~~iLs~ 208 (419)
T KOG2120|consen 137 LWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNS--------VITVSTLHGILSQ 208 (419)
T ss_pred ceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchh--------heeHHHHHHHHHH
Confidence 45778888888887777666432 11110 0 0112344443322 2222 24455677
Q ss_pred CCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCC-CCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N-~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
++.|+.|.|-+++|+|..+.-++ ++ .+|+.|+||.| +|+.. +++.
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iA----kN-~~L~~lnlsm~sG~t~n-----------------------------~~~l 254 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIA----KN-SNLVRLNLSMCSGFTEN-----------------------------ALQL 254 (419)
T ss_pred HHhhhhccccccccCcHHHHHHh----cc-ccceeeccccccccchh-----------------------------HHHH
Confidence 77777777777777776654443 33 77777777755 34421 1111
Q ss_pred HHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC--CChHHHHHHHhhCCCCCCccEEEccCCCC-
Q 010572 367 LGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR--GGVETAKFLSKLMPLAPELVEVNAGYNLM- 441 (507)
Q Consensus 367 L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~--i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l- 441 (507)
.+. +.|++|||++|.+..+-+..+...+ ..+|+.||||+.. +++. .++-+-+.+|+|.+||||.|..
T Consensus 255 ---l~~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 255 ---LLSSCSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred ---HHHhhhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeecccccccc
Confidence 111 5689999999999877665544333 4679999999874 5444 4445556789999999997654
Q ss_pred ChhHHHHHHHHHhcCCCCccEEEecCCCCCCCcc
Q 010572 442 PLESLTIICSALKVAKGHLQRLDLTGNNWELQPS 475 (507)
Q Consensus 442 ~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~ 475 (507)
.+ ++. .++.+- ..|++|.|+.|+- +.++
T Consensus 327 ~~-~~~---~~~~kf-~~L~~lSlsRCY~-i~p~ 354 (419)
T KOG2120|consen 327 KN-DCF---QEFFKF-NYLQHLSLSRCYD-IIPE 354 (419)
T ss_pred Cc-hHH---HHHHhc-chheeeehhhhcC-CChH
Confidence 55 433 233322 3699999999874 6654
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.27 E-value=4.1e-07 Score=93.67 Aligned_cols=45 Identities=36% Similarity=0.347 Sum_probs=36.5
Q ss_pred HHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 282 ~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
+..++..++|..|||.+|++..-..++ | + ..+|+.||+|+|.|++
T Consensus 245 ae~~~~L~~l~vLDLRdNklke~Pde~-c--l---LrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLKEVPDEI-C--L---LRSLERLDLSNNDISS 289 (565)
T ss_pred HHHhcccccceeeeccccccccCchHH-H--H---hhhhhhhcccCCcccc
Confidence 445778999999999999998876653 2 2 2679999999999995
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=9.8e-08 Score=99.07 Aligned_cols=111 Identities=21% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCcCeeecccccCh-hhHHHHHHHHhhCCCCccEEEeecCCCChh-HHHHHHHHhccCCcccccccceeccccccccCCC
Q 010572 197 SKLQSLVLRWIRFE-EHVQALCKLLIQNSETLASLEFLHCKLSPS-FVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~-~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~-~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~ 274 (507)
.+|+...|.+.... .+.+ .....+++++.||||.|-|... .+-.+++-|. .++.|.++.|.+.....
T Consensus 121 kkL~~IsLdn~~V~~~~~~----~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp-------~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE----EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLP-------SLENLNLSSNRLSNFIS 189 (505)
T ss_pred HhhhheeecCccccccchh----hhhhhCCcceeecchhhhHHhHHHHHHHHHhcc-------cchhcccccccccCCcc
Confidence 45666666654321 1111 2234568899999999987653 3445566554 36777777776532111
Q ss_pred CcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCC
Q 010572 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (507)
Q Consensus 275 ~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~ 329 (507)
...+ ...++||.|.|+.|+|+...+..+.. ..++|+.|+|+.|.
T Consensus 190 s~~~-------~~l~~lK~L~l~~CGls~k~V~~~~~----~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 190 SNTT-------LLLSHLKQLVLNSCGLSWKDVQWILL----TFPSLEVLYLEANE 233 (505)
T ss_pred ccch-------hhhhhhheEEeccCCCCHHHHHHHHH----hCCcHHHhhhhccc
Confidence 1111 14678889999999998887766643 35889999998885
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.14 E-value=2.7e-06 Score=101.66 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=30.9
Q ss_pred eeEEEEeccCcchhhhh-hhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHH
Q 010572 175 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFV 242 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~-~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~ 242 (507)
.++.|++....- ..++ ......+|++|+|+++..-... +. +..+++|++|+|++|..-.+.+
T Consensus 612 ~L~~L~L~~s~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~i----p~-ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 612 NLVKLQMQGSKL-EKLWDGVHSLTGLRNIDLRGSKNLKEI----PD-LSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred CCcEEECcCccc-cccccccccCCCCCEEECCCCCCcCcC----Cc-cccCCcccEEEecCCCCccccc
Confidence 567777754111 1111 1223456788888754211111 11 1345678888888776443333
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.10 E-value=7e-06 Score=98.16 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=52.3
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
.++.|++..... ..+.+-.....|++|+++++....-+.+ +..+.+|++|+|+++..-...+. +.
T Consensus 590 ~Lr~L~~~~~~l-~~lP~~f~~~~L~~L~L~~s~l~~L~~~-----~~~l~~Lk~L~Ls~~~~l~~ip~-ls-------- 654 (1153)
T PLN03210 590 KLRLLRWDKYPL-RCMPSNFRPENLVKLQMQGSKLEKLWDG-----VHSLTGLRNIDLRGSKNLKEIPD-LS-------- 654 (1153)
T ss_pred ccEEEEecCCCC-CCCCCcCCccCCcEEECcCccccccccc-----cccCCCCCEEECCCCCCcCcCCc-cc--------
Confidence 367777764221 1111112346789999987743322222 24678999999998753222221 10
Q ss_pred ccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCC
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC 299 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N 299 (507)
....++.|.+++|..+. .+...+..+++|+.|++++|
T Consensus 655 ~l~~Le~L~L~~c~~L~--------~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 655 MATNLETLKLSDCSSLV--------ELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred cCCcccEEEecCCCCcc--------ccchhhhccCCCCEEeCCCC
Confidence 01346666665543211 12233455556666666654
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.03 E-value=1.6e-06 Score=86.46 Aligned_cols=149 Identities=20% Similarity=0.149 Sum_probs=86.1
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
.-+-|++||||+|.+....-. . +-.+.++.|++|+|+|.... .++..
T Consensus 282 TWq~LtelDLS~N~I~~iDES-----v-KL~Pkir~L~lS~N~i~~v~----------nLa~L----------------- 328 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDES-----V-KLAPKLRRLILSQNRIRTVQ----------NLAEL----------------- 328 (490)
T ss_pred hHhhhhhccccccchhhhhhh-----h-hhccceeEEeccccceeeeh----------hhhhc-----------------
Confidence 345689999999998654321 1 12489999999999987310 11111
Q ss_pred HHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh-hH
Q 010572 367 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL-ES 445 (507)
Q Consensus 367 L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~-~g 445 (507)
.+|++||||+|.++..-.- -...-++++|+|+.|.|.+ |+ .+...-+|..||++.|+|.. +.
T Consensus 329 ------~~L~~LDLS~N~Ls~~~Gw-----h~KLGNIKtL~La~N~iE~-----LS-GL~KLYSLvnLDl~~N~Ie~lde 391 (490)
T KOG1259|consen 329 ------PQLQLLDLSGNLLAECVGW-----HLKLGNIKTLKLAQNKIET-----LS-GLRKLYSLVNLDLSSNQIEELDE 391 (490)
T ss_pred ------ccceEeecccchhHhhhhh-----HhhhcCEeeeehhhhhHhh-----hh-hhHhhhhheeccccccchhhHHH
Confidence 4567777777766542111 1122346777777776643 21 12222357777777777753 33
Q ss_pred HHHHHHHHhcCCCCccEEEecCCCCC-CCccHHHHHHHHHHcCCCe
Q 010572 446 LTIICSALKVAKGHLQRLDLTGNNWE-LQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 446 ~~~L~~aL~~~~~~L~~LdL~~N~~~-~~~~~~~~l~~~~~~~~~i 490 (507)
++.|. +-+-|+.+.|.+|++. +.+--.++|+.|.+.-..|
T Consensus 392 V~~IG-----~LPCLE~l~L~~NPl~~~vdYRTKVLa~FGERaSE~ 432 (490)
T KOG1259|consen 392 VNHIG-----NLPCLETLRLTGNPLAGSVDYRTKVLARFGERASEI 432 (490)
T ss_pred hcccc-----cccHHHHHhhcCCCccccchHHHHHHHHHhhhhhhe
Confidence 33222 1123777777777773 4445566777777765444
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.97 E-value=2.7e-06 Score=80.06 Aligned_cols=133 Identities=20% Similarity=0.143 Sum_probs=47.3
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
+...+++|+|++|.|..- +.+ -....+|+.||||+|.|+..- . +. .
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L----~~~l~~L~~L~Ls~N~I~~l~----------~------l~------------~ 62 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENL----GATLDKLEVLDLSNNQITKLE----------G------LP------------G 62 (175)
T ss_dssp ---------------------S------TT-TT--EEE-TTS--S--T----------T---------------------
T ss_pred cccccccccccccccccc--cch----hhhhcCCCEEECCCCCCcccc----------C------cc------------C
Confidence 345789999999999763 222 223478999999999998410 0 00 0
Q ss_pred HHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHH
Q 010572 367 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL 446 (507)
Q Consensus 367 L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~ 446 (507)
+ ..|++|++++|.|++.+. .+.. ..+.|++|+|++|+|.+-+. + ..++..++|++|+|.+|++.+..-
T Consensus 63 L-----~~L~~L~L~~N~I~~i~~-~l~~---~lp~L~~L~L~~N~I~~l~~--l-~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 63 L-----PRLKTLDLSNNRISSISE-GLDK---NLPNLQELYLSNNKISDLNE--L-EPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp ------TT--EEE--SS---S-CH-HHHH---H-TT--EEE-TTS---SCCC--C-GGGGG-TT--EEE-TT-GGGGSTT
T ss_pred h-----hhhhhcccCCCCCCcccc-chHH---hCCcCCEEECcCCcCCChHH--h-HHHHcCCCcceeeccCCcccchhh
Confidence 1 568899999999987642 2222 24579999999999866321 1 234456889999999999976432
Q ss_pred HHHHHHHhcCCCCccEEEecC
Q 010572 447 TIICSALKVAKGHLQRLDLTG 467 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~ 467 (507)
-.. .++.. -++|+.||-..
T Consensus 131 YR~-~vi~~-lP~Lk~LD~~~ 149 (175)
T PF14580_consen 131 YRL-FVIYK-LPSLKVLDGQD 149 (175)
T ss_dssp HHH-HHHHH--TT-SEETTEE
T ss_pred HHH-HHHHH-cChhheeCCEE
Confidence 211 12222 25799997543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.91 E-value=6.9e-06 Score=77.28 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=37.4
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
.+|++|||++|+|.... .++....|++|++++|.|+.-+.. +... .|+|++|+|++|.|.+-+- + ..
T Consensus 42 ~~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N~I~~i~~~-l~~~---lp~L~~L~L~~N~I~~l~~--l-~~ 108 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNNRISSISEG-LDKN---LPNLQELYLSNNKISDLNE--L-EP 108 (175)
T ss_dssp TT--EEE-TTS--S--T------T----TT--EEE--SS---S-CHH-HHHH----TT--EEE-TTS---SCCC--C-GG
T ss_pred cCCCEEECCCCCCcccc------CccChhhhhhcccCCCCCCccccc-hHHh---CCcCCEEECcCCcCCChHH--h-HH
Confidence 46899999999998632 366678899999999999875432 3222 3789999999999976331 1 23
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
|... ++|+.|+|.+|++
T Consensus 109 L~~l-~~L~~L~L~~NPv 125 (175)
T PF14580_consen 109 LSSL-PKLRVLSLEGNPV 125 (175)
T ss_dssp GGG--TT--EEE-TT-GG
T ss_pred HHcC-CCcceeeccCCcc
Confidence 4433 6899999999997
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.89 E-value=2.7e-06 Score=87.67 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=102.3
Q ss_pred HHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC-----ccccc-----------ccCCchh
Q 010572 281 LVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG-----WLSKY-----------DRSGPLF 344 (507)
Q Consensus 281 L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~-----~l~~~-----------~~~~l~~ 344 (507)
...++..+++|..|.|.+|.+.. +|++-......++.+-+..|.+-. |.+.+ -|.....
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r 230 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR 230 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH
Confidence 45678889999999999888743 555444556778888888887441 22110 0000000
Q ss_pred -------hcccCCC---cCccc----cccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEec
Q 010572 345 -------SLGAGKS---LQSLR----LLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI 408 (507)
Q Consensus 345 -------~L~~~~~---L~~L~----ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdL 408 (507)
.+...+. ++.+. .-+......+ ++++. .+|++|+|++|+|+..--..+. ....++.|.|
T Consensus 231 l~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP-~~cf~~L~~L~~lnlsnN~i~~i~~~aFe----~~a~l~eL~L 305 (498)
T KOG4237|consen 231 LYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICP-AKCFKKLPNLRKLNLSNNKITRIEDGAFE----GAAELQELYL 305 (498)
T ss_pred HHHHHhcccchhhhhhhHHhHHHhhccccCcCCcCh-HHHHhhcccceEeccCCCccchhhhhhhc----chhhhhhhhc
Confidence 0000000 11110 0000000000 12233 7889999999998754333332 3346888888
Q ss_pred cCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 409 SKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 409 s~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
..|+|....-+++ .....|+.|+|.+|+|+--.. -|+. +..+|.+|+|-+|.|.-.-..+.+-.=+.+++
T Consensus 306 ~~N~l~~v~~~~f----~~ls~L~tL~L~~N~it~~~~----~aF~-~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 306 TRNKLEFVSSGMF----QGLSGLKTLSLYDNQITTVAP----GAFQ-TLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred CcchHHHHHHHhh----hccccceeeeecCCeeEEEec----cccc-ccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 8988855443333 233569999999999985321 1233 23578999999999833333333333334443
No 32
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.69 E-value=1.6e-06 Score=89.33 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=38.9
Q ss_pred CCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 399 KELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 399 ~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
...+|.+|||.+|++..- +.-++. .++|..||+|+|.|+.-- ..|. +. +|+.|-|.||++
T Consensus 250 ~L~~l~vLDLRdNklke~-Pde~cl----LrsL~rLDlSNN~is~Lp-----~sLg-nl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLKEV-PDEICL----LRSLERLDLSNNDISSLP-----YSLG-NL-HLKFLALEGNPL 309 (565)
T ss_pred ccccceeeeccccccccC-chHHHH----hhhhhhhcccCCccccCC-----cccc-cc-eeeehhhcCCch
Confidence 345688888888887542 112221 146888899998887422 1232 22 788899999987
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.64 E-value=0.00015 Score=75.50 Aligned_cols=185 Identities=18% Similarity=0.144 Sum_probs=119.4
Q ss_pred CCCCCCEEEccC-CCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcc-cCCCcCccccccch---
Q 010572 287 SGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG-AGKSLQSLRLLNLS--- 361 (507)
Q Consensus 287 ~~~sL~~L~LS~-N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~-~~~~L~~L~ll~l~--- 361 (507)
.+.-+..+||-+ |.++|+++..++.. ...|+.|+.+++...+... -.+|+ .+.+|+.|.+..-+
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~----c~~lq~l~~s~~t~~~d~~-------l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACG----CHALQVLCYSSCTDITDEV-------LWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhh----hhHhhhhcccCCCCCchHH-------HHHHhcCCCceEEEeccccchhh
Confidence 344566666544 55788887766543 2568888888775542111 01333 23444444443333
Q ss_pred -hHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 362 -HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 362 -~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
.+...++.. ...|+.+++..+..+..+ .|+..-.....|++|-|+.+. |+++|...+...-.....|..+-|+..
T Consensus 335 d~~ft~l~rn-~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~ 411 (483)
T KOG4341|consen 335 DRGFTMLGRN-CPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNC 411 (483)
T ss_pred hhhhhhhhcC-Chhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCC
Confidence 223333221 178999999999987766 555544556789999999875 899999999876666667999999999
Q ss_pred CCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCeEEc
Q 010572 440 LMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILIL 493 (507)
Q Consensus 440 ~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i~~~ 493 (507)
+...+..- +-+..+ .+|+.++|.+++- +..+ .+..|..+-|.|.|.
T Consensus 412 p~i~d~~L---e~l~~c-~~Leri~l~~~q~-vtk~---~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 412 PLITDATL---EHLSIC-RNLERIELIDCQD-VTKE---AISRFATHLPNIKVH 457 (483)
T ss_pred CCchHHHH---HHHhhC-cccceeeeechhh-hhhh---hhHHHHhhCccceeh
Confidence 98765532 445544 4899999988874 5543 455566677777553
No 34
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=97.53 E-value=0.00011 Score=47.74 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=20.5
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHh
Q 010572 428 APELVEVNAGYNLMPLESLTIICSALK 454 (507)
Q Consensus 428 n~~L~~L~Ls~N~l~~~g~~~L~~aL~ 454 (507)
+++|++|||++|.|+++|+..||++|+
T Consensus 1 n~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 1 NPSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CCccCEEECCCCCCCHHHHHHHHHHhc
Confidence 356778888888888888888887775
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.51 E-value=4.8e-05 Score=78.60 Aligned_cols=65 Identities=22% Similarity=0.160 Sum_probs=43.4
Q ss_pred hcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 397 VTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 397 L~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
......|++||||+|.|+...-.++..+ ..+++|.|..|.|..-.-. +++ .-..|+.|+|.+|++
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~----a~l~eL~L~~N~l~~v~~~----~f~-~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGA----AELQELYLTRNKLEFVSSG----MFQ-GLSGLKTLSLYDNQI 334 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcch----hhhhhhhcCcchHHHHHHH----hhh-ccccceeeeecCCee
Confidence 4455678888888888877655555544 3678888888887642211 222 335788888888886
No 36
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.47 E-value=3.7e-06 Score=78.02 Aligned_cols=86 Identities=24% Similarity=0.269 Sum_probs=55.8
Q ss_pred CCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCC
Q 010572 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (507)
Q Consensus 223 ~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~ 302 (507)
++.+++.|.||+|.++.- ++.+++ | ..++.|.+..+++. ++...+++++.|+.|+++-|.+.
T Consensus 31 ~~s~ITrLtLSHNKl~~v-ppnia~-l-------~nlevln~~nnqie---------~lp~~issl~klr~lnvgmnrl~ 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVV-PPNIAE-L-------KNLEVLNLSNNQIE---------ELPTSISSLPKLRILNVGMNRLN 92 (264)
T ss_pred chhhhhhhhcccCceeec-CCcHHH-h-------hhhhhhhcccchhh---------hcChhhhhchhhhheecchhhhh
Confidence 346788889999987631 111111 1 12455555555532 24455788999999999998874
Q ss_pred chHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 303 ~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
.. -.++ +..+.|+.|||++|+++.
T Consensus 93 ~l-----prgf-gs~p~levldltynnl~e 116 (264)
T KOG0617|consen 93 IL-----PRGF-GSFPALEVLDLTYNNLNE 116 (264)
T ss_pred cC-----cccc-CCCchhhhhhcccccccc
Confidence 32 1222 457999999999999984
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=1.2e-05 Score=88.37 Aligned_cols=122 Identities=23% Similarity=0.163 Sum_probs=71.1
Q ss_pred HHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhH
Q 010572 284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHI 363 (507)
Q Consensus 284 ~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~ 363 (507)
.|.-.+.|++||||+|++.+-. .|+ -.|.|+.|||++|.+.-. +. +
T Consensus 182 SLqll~ale~LnLshNk~~~v~------~Lr-~l~~LkhLDlsyN~L~~v-p~---------------l----------- 227 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD------NLR-RLPKLKHLDLSYNCLRHV-PQ---------------L----------- 227 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH------HHH-hcccccccccccchhccc-cc---------------c-----------
Confidence 3555567778888888876643 222 247788888888877620 00 0
Q ss_pred HHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChH-HHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 364 AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE-TAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~-g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
..-+|.|+.|+|++|-++..- ++.+..+|+.||+|+|-|.+- -...|+.+ ..|+.|.|.+|++-
T Consensus 228 -----~~~gc~L~~L~lrnN~l~tL~------gie~LksL~~LDlsyNll~~hseL~pLwsL----s~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 228 -----SMVGCKLQLLNLRNNALTTLR------GIENLKSLYGLDLSYNLLSEHSELEPLWSL----SSLIVLWLEGNPLC 292 (1096)
T ss_pred -----chhhhhheeeeecccHHHhhh------hHHhhhhhhccchhHhhhhcchhhhHHHHH----HHHHHHhhcCCccc
Confidence 000256788888888775421 133445688888888876543 22333332 24777888888873
Q ss_pred --hhHHHHHHHHHh
Q 010572 443 --LESLTIICSALK 454 (507)
Q Consensus 443 --~~g~~~L~~aL~ 454 (507)
++--...++-+.
T Consensus 293 c~p~hRaataqYl~ 306 (1096)
T KOG1859|consen 293 CAPWHRAATAQYLH 306 (1096)
T ss_pred cCHHHHHHHHhHhc
Confidence 333334444444
No 38
>PLN03150 hypothetical protein; Provisional
Probab=97.36 E-value=0.00034 Score=78.55 Aligned_cols=107 Identities=23% Similarity=0.226 Sum_probs=54.1
Q ss_pred CCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhh
Q 010572 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKF 370 (507)
Q Consensus 291 L~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~ 370 (507)
++.|+|++|.+.+.....+ ....+|+.|+|++|.|++.++. .++..
T Consensus 420 v~~L~L~~n~L~g~ip~~i-----~~L~~L~~L~Ls~N~l~g~iP~--------~~~~l--------------------- 465 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-----SKLRHLQSINLSGNSIRGNIPP--------SLGSI--------------------- 465 (623)
T ss_pred EEEEECCCCCccccCCHHH-----hCCCCCCEEECCCCcccCcCCh--------HHhCC---------------------
Confidence 5666666666655444332 2346666666666666654331 11111
Q ss_pred hcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCC
Q 010572 371 FGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNL 440 (507)
Q Consensus 371 l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~ 440 (507)
+.|+.|+|++|.+... +.+.+....+|++|+|++|.++...+..+.... .++..+++++|.
T Consensus 466 --~~L~~LdLs~N~lsg~----iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~---~~~~~l~~~~N~ 526 (623)
T PLN03150 466 --TSLEVLDLSYNSFNGS----IPESLGQLTSLRILNLNGNSLSGRVPAALGGRL---LHRASFNFTDNA 526 (623)
T ss_pred --CCCCEEECCCCCCCCC----CchHHhcCCCCCEEECcCCcccccCChHHhhcc---ccCceEEecCCc
Confidence 4456666666665422 122233344566666666666555554444321 234455555554
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.26 E-value=6.4e-05 Score=75.26 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=71.3
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcc-cccccCCchhhcccCCCcCccccccchhH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL-SKYDRSGPLFSLGAGKSLQSLRLLNLSHI 363 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l-~~~~~~~l~~~L~~~~~L~~L~ll~l~~~ 363 (507)
+.-.|.++.|++|.|.+...+- ++ ..++|+.||||+|.++... +. .
T Consensus 303 vKL~Pkir~L~lS~N~i~~v~n--La-----~L~~L~~LDLS~N~Ls~~~Gwh------------------~-------- 349 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRTVQN--LA-----ELPQLQLLDLSGNLLAECVGWH------------------L-------- 349 (490)
T ss_pred hhhccceeEEeccccceeeehh--hh-----hcccceEeecccchhHhhhhhH------------------h--------
Confidence 4556889999999999877665 31 2488999999999887310 00 0
Q ss_pred HHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 364 AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
.+ .+++.|+|+.|.|.+.. +|...-+|..||+++|+|..-. .+ +.+...|.|+.+.|-+|++.
T Consensus 350 --KL-----GNIKtL~La~N~iE~LS------GL~KLYSLvnLDl~~N~Ie~ld--eV-~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 350 --KL-----GNIKTLKLAQNKIETLS------GLRKLYSLVNLDLSSNQIEELD--EV-NHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred --hh-----cCEeeeehhhhhHhhhh------hhHhhhhheeccccccchhhHH--Hh-cccccccHHHHHhhcCCCcc
Confidence 00 35677777777775421 2444556888888888875321 11 23445577888888888885
No 40
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.24 E-value=7.8e-06 Score=75.86 Aligned_cols=128 Identities=19% Similarity=0.159 Sum_probs=66.7
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIA 364 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~ 364 (507)
|.....++.|-||+|++.-..+. ++ ...+|+.|++++|.|+..-. .+++.+.|+.|.+.-|+ .
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppn-ia-----~l~nlevln~~nnqie~lp~---------~issl~klr~lnvgmnr--l 91 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPN-IA-----ELKNLEVLNLSNNQIEELPT---------SISSLPKLRILNVGMNR--L 91 (264)
T ss_pred ccchhhhhhhhcccCceeecCCc-HH-----HhhhhhhhhcccchhhhcCh---------hhhhchhhhheecchhh--h
Confidence 34456677888888888665443 22 23678888888888874221 23333333333332222 1
Q ss_pred HHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCC----CCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccC
Q 010572 365 ASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKE----LKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY 438 (507)
Q Consensus 365 ~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n----~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~ 438 (507)
..++.+++ +.|++|||.+|.+.... |+.| .+|+-|.|++|.+..- +..+ .+..+|+.|.+..
T Consensus 92 ~~lprgfgs~p~levldltynnl~e~~-------lpgnff~m~tlralyl~dndfe~l-p~dv----g~lt~lqil~lrd 159 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLTYNNLNENS-------LPGNFFYMTTLRALYLGDNDFEIL-PPDV----GKLTNLQILSLRD 159 (264)
T ss_pred hcCccccCCCchhhhhhcccccccccc-------CCcchhHHHHHHHHHhcCCCcccC-Chhh----hhhcceeEEeecc
Confidence 22334444 66788888887775421 2222 2456666666654210 1111 1224566666666
Q ss_pred CCC
Q 010572 439 NLM 441 (507)
Q Consensus 439 N~l 441 (507)
|.+
T Consensus 160 ndl 162 (264)
T KOG0617|consen 160 NDL 162 (264)
T ss_pred Cch
Confidence 655
No 41
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.20 E-value=0.00053 Score=72.41 Aligned_cols=78 Identities=19% Similarity=0.121 Sum_probs=36.8
Q ss_pred CcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHH
Q 010572 375 VQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSAL 453 (507)
Q Consensus 375 L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL 453 (507)
+.++.++.|.++. +.......+..++++..|++++|..++.|+..+.+++..|..++.+-.+.|..++.|...+.+++
T Consensus 415 l~el~ls~~~lka-~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~gl~p~~~~~ 492 (553)
T KOG4242|consen 415 LAELSLSPGPLKA-GLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPGLGPRNEER 492 (553)
T ss_pred ccCcccCCCcccc-cHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccccchhhhhc
Confidence 4444444444433 12233333444444555555555555555555555554444455555555555555544444443
No 42
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=97.20 E-value=0.00043 Score=45.00 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=24.8
Q ss_pred CCCCCEEEccCCCCCchHHHHHHHHhc
Q 010572 288 GRSLCSLKLRHCHLDRDFGRMVFSSLL 314 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~~~L~~~L~ 314 (507)
+++|++|||++|.|+++|++.+|++|.
T Consensus 1 n~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 1 NPSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CCccCEEECCCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999999874
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.16 E-value=0.00066 Score=70.83 Aligned_cols=247 Identities=19% Similarity=0.183 Sum_probs=128.7
Q ss_pred CcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCC-CChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 198 ~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~-ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
.|++|.+++-.. .+...+. .+..+++++++|++.+|. +++.....+.+. ...+.++.+.. |..
T Consensus 139 ~lk~LSlrG~r~-v~~sslr-t~~~~CpnIehL~l~gc~~iTd~s~~sla~~-------C~~l~~l~L~~-------c~~ 202 (483)
T KOG4341|consen 139 FLKELSLRGCRA-VGDSSLR-TFASNCPNIEHLALYGCKKITDSSLLSLARY-------CRKLRHLNLHS-------CSS 202 (483)
T ss_pred cccccccccccc-CCcchhh-HHhhhCCchhhhhhhcceeccHHHHHHHHHh-------cchhhhhhhcc-------cch
Confidence 456666654321 1222232 234566788888888776 344444444221 12344443332 122
Q ss_pred chHHHHHH-HhCCCCCCEEEccCCC-CCchHHHHHHHHhccCCCCccEEECcCCC-CCCc-c---c-------c---ccc
Q 010572 277 VVVELVSF-LSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGW-L---S-------K---YDR 339 (507)
Q Consensus 277 l~~~L~~~-L~~~~sL~~L~LS~N~-L~~~g~~~L~~~L~~~~~~L~~LdLS~N~-L~~~-l---~-------~---~~~ 339 (507)
++...... -..+++|++|++|.+. +++.|++.+..+. ..++++.+.+|. ++.. + . + .+|
T Consensus 203 iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~----~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c 278 (483)
T KOG4341|consen 203 ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC----KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC 278 (483)
T ss_pred hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc----hhhhhhhhcccccccHHHHHHHhccChHhhccchhhh
Confidence 34333333 3456788888888765 5666666554432 224444444331 1100 0 0 0 001
Q ss_pred CCchh-----hcccCCCcCccccccchhHHHHHHhhhc---CCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccC
Q 010572 340 SGPLF-----SLGAGKSLQSLRLLNLSHIAASLGKFFG---TSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISK 410 (507)
Q Consensus 340 ~~l~~-----~L~~~~~L~~L~ll~l~~~~~~L~~~l~---~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~ 410 (507)
..++. +-..+..|..|...+-..+....-.+++ .+|+.|-|+.|+ +++.|+..++. ....|+.+++..
T Consensus 279 ~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e~ 355 (483)
T KOG4341|consen 279 NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR---NCPHLERLDLEE 355 (483)
T ss_pred ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc---CChhhhhhcccc
Confidence 10000 0001111222332222222222223333 678888888887 78888777653 245688899888
Q ss_pred CCCChHHHHHHHhhCCCCCCccEEEccCCC-CChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 411 NRGGVETAKFLSKLMPLAPELVEVNAGYNL-MPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 411 N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~-l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
...+..+ .|.++-..++.|+.|.|+.+. ++|+|...+...-.. ...|+.|.|+.+..
T Consensus 356 ~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~-~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 356 CGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS-LEGLEVLELDNCPL 413 (483)
T ss_pred cceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc-ccccceeeecCCCC
Confidence 8766655 456666667789999999765 478887766543322 24677788877765
No 44
>PLN03150 hypothetical protein; Provisional
Probab=97.13 E-value=0.00083 Score=75.47 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=62.5
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|+.|+|++|.+.. .+...+.....|++|||++|.++......++. .++|+.|+|++|.+...-...+...
T Consensus 442 ~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~----L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 442 RHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ----LTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCCCchHHhc----CCCCCEEECcCCcccccCChHHhhc
Confidence 678999999998853 23333555678999999999998877776654 3689999999999975544433321
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
..++..+++.+|..
T Consensus 514 ----~~~~~~l~~~~N~~ 527 (623)
T PLN03150 514 ----LLHRASFNFTDNAG 527 (623)
T ss_pred ----cccCceEEecCCcc
Confidence 13467888888864
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.07 E-value=0.00012 Score=56.15 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=32.3
Q ss_pred CCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCC
Q 010572 374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLM 441 (507)
Q Consensus 374 ~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l 441 (507)
+|++|+|++|+|....- +++....+|++|++++|.++.-... ++...++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~----~~f~~l~~L~~L~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPP----DSFSNLPNLETLDLSNNNLTSIPPD----AFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECT----TTTTTGTTESEEEETSSSESEEETT----TTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCH----HHHcCCCCCCEeEccCCccCccCHH----HHcCCCCCCEEeCcCCcC
Confidence 46667777766654321 1223345566666666666543222 233445666666666654
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.97 E-value=0.0021 Score=72.80 Aligned_cols=116 Identities=22% Similarity=0.205 Sum_probs=68.2
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch-hHH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HIA 364 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~~ 364 (507)
..+|+|+.|.+++=.+..+....+| .++++|..||+|+.+++.. ..++..++|+.|..-|+. .-.
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc----~sFpNL~sLDIS~TnI~nl----------~GIS~LknLq~L~mrnLe~e~~ 210 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLC----ASFPNLRSLDISGTNISNL----------SGISRLKNLQVLSMRNLEFESY 210 (699)
T ss_pred hhCcccceEEecCceecchhHHHHh----hccCccceeecCCCCccCc----------HHHhccccHHHHhccCCCCCch
Confidence 4679999999999998777766666 4569999999999999852 134444555554444443 112
Q ss_pred HHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhh---cCCCCCCEEeccCCCCChH
Q 010572 365 ASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGV---TKELKLVNINISKNRGGVE 416 (507)
Q Consensus 365 ~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL---~~n~~L~~LdLs~N~i~~~ 416 (507)
..+-.-+. +.|++||+|.....+.- +.+-.-+ ...+.|+.||.|+..+..+
T Consensus 211 ~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 211 QDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hhHHHHhcccCCCeeeccccccccch-HHHHHHHHhcccCccccEEecCCcchhHH
Confidence 22323333 66677777665544332 1111111 1133566666665555444
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.0041 Score=62.62 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=34.9
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCCh-HHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGV-ETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~-~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
+++..+-+..|-|.++.... .-.+...+-.|+|+.|+|.+ +... ++...+.|+.|.++.|++.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek---~se~~p~~~~LnL~~~~idswasvD----~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEK---GSEPFPSLSCLNLGANNIDSWASVD----ALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchhhcc---cCCCCCcchhhhhcccccccHHHHH----HHcCCchhheeeccCCcccc
Confidence 55555666666554433221 12223345577777777754 2222 23344667777777777764
No 48
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.61 E-value=0.0026 Score=66.95 Aligned_cols=42 Identities=33% Similarity=0.263 Sum_probs=23.2
Q ss_pred HHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 284 ~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
.+..+++|+.|++++|++.+...... ....|+.|++++|.++
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~~~~------~~~~L~~L~ls~N~i~ 199 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPKLLS------NLSNLNNLDLSGNKIS 199 (394)
T ss_pred hhhccccccccccCCchhhhhhhhhh------hhhhhhheeccCCccc
Confidence 34556666666666666655443210 2255666666666665
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.60 E-value=0.00083 Score=70.70 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=90.7
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
.+|+.|++++|++...- ..+ ...+.|+.|++++|.++...+ ..+....|+.|.+.++. ...++
T Consensus 140 ~nL~~L~l~~N~i~~l~-----~~~-~~l~~L~~L~l~~N~l~~l~~---------~~~~~~~L~~L~ls~N~--i~~l~ 202 (394)
T COG4886 140 SNLKELDLSDNKIESLP-----SPL-RNLPNLKNLDLSFNDLSDLPK---------LLSNLSNLNNLDLSGNK--ISDLP 202 (394)
T ss_pred hhcccccccccchhhhh-----hhh-hccccccccccCCchhhhhhh---------hhhhhhhhhheeccCCc--cccCc
Confidence 38999999999997752 111 235999999999999985221 11134445666665554 11122
Q ss_pred hh--hcCCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhH
Q 010572 369 KF--FGTSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLES 445 (507)
Q Consensus 369 ~~--l~~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g 445 (507)
.. ....|++|++++|. +... ..+.....+..|.+++|++... -..+...++++.|+++.|.+.+-.
T Consensus 203 ~~~~~~~~L~~l~~~~N~~~~~~------~~~~~~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 203 PEIELLSALEELDLSNNSIIELL------SSLSNLKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred hhhhhhhhhhhhhhcCCcceecc------hhhhhcccccccccCCceeeec-----cchhccccccceeccccccccccc
Confidence 21 12457888888885 2221 1233445677777888877652 112233356889999999888643
Q ss_pred HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 446 LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 446 ~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
. +. +..+++.|++++|.+
T Consensus 272 ~------~~-~~~~l~~L~~s~n~~ 289 (394)
T COG4886 272 S------LG-SLTNLRELDLSGNSL 289 (394)
T ss_pred c------cc-ccCccCEEeccCccc
Confidence 2 21 235788899988876
No 50
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=96.44 E-value=0.002 Score=68.25 Aligned_cols=108 Identities=17% Similarity=0.009 Sum_probs=73.7
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCC---------------------------------CCEEeccCCCCChHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELK---------------------------------LVNINISKNRGGVETAK 419 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~---------------------------------L~~LdLs~N~i~~~g~~ 419 (507)
..+|+|.++.|.+..+|...+ .+..+.+ +..+.++.|.++. ++.
T Consensus 354 ~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~ 430 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLE 430 (553)
T ss_pred eeeeEeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHH
Confidence 568999999999887775544 3444444 4445555555432 334
Q ss_pred HHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHH-HHHHHHHc
Q 010572 420 FLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVS-MLSEFRHN 486 (507)
Q Consensus 420 ~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~-~l~~~~~~ 486 (507)
.+...+..++++..|++++|..++.|...|..+++.| |+++..-.+.|.. +..+.. .+.++..|
T Consensus 431 s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n-~rlr~ipds~n~p--~~~gl~p~~~~~p~n 495 (553)
T KOG4242|consen 431 SAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSN-CRLRPIPDSLNLP--EDPGLGPRNEERPLN 495 (553)
T ss_pred HHHHhhccCcccccccccCCCcccCCCCcCccccCCC-CccCCCCCCCCCc--cccccchhhhhcccc
Confidence 4445555667899999999999999999999998876 7888888877774 555544 44454444
No 51
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.36 E-value=0.0055 Score=62.44 Aligned_cols=117 Identities=13% Similarity=0.183 Sum_probs=85.4
Q ss_pred CCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
+.+++.+|+++. |.-.-.+.+++|+..+...+.--|.+-+.++..+.+++..++.|++|++|+++.|-|+..|...+-.
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~ 277 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR 277 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence 678888888776 5555667888888888888888888888888888888888888888999999999998888888888
Q ss_pred HHhcCCCCccEEEecCCCCC-CCccHHHHHHHHHHcCCCeE
Q 010572 452 ALKVAKGHLQRLDLTGNNWE-LQPSHVSMLSEFRHNGLPIL 491 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~~-~~~~~~~~l~~~~~~~~~i~ 491 (507)
+|+.+ .+|..|-. .|+-. .+.....-++-..+.+..|+
T Consensus 278 al~~n-~tl~el~~-dnqrq~lg~~vemeia~~leen~sll 316 (353)
T KOG3735|consen 278 ALQSN-KSLTELKN-DNQRQVLGNAVEMEIALELEENASLL 316 (353)
T ss_pred HHhcc-chhhHhhh-hhHHhhcccHHHHHHHHHHHhccccc
Confidence 88877 45766644 23321 23444444555555555553
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.34 E-value=0.0012 Score=50.57 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
++|++|+|++|+|..-.... +...++|++|+|++|.|+.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~-----f~~l~~L~~L~l~~N~l~~ 39 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDS-----FSNLPNLETLDLSNNNLTS 39 (61)
T ss_dssp TTESEEEETSSTESEECTTT-----TTTGTTESEEEETSSSESE
T ss_pred CcCcEEECCCCCCCccCHHH-----HcCCCCCCEeEccCCccCc
Confidence 45667777777666544321 2334667777777776653
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.33 E-value=0.00029 Score=77.73 Aligned_cols=136 Identities=21% Similarity=0.157 Sum_probs=84.3
Q ss_pred CCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhh
Q 010572 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKF 370 (507)
Q Consensus 291 L~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~ 370 (507)
|..-+.+.|.|.--. ++| .-.+.|+.|+||+|.++.. ++
T Consensus 166 L~~a~fsyN~L~~mD-----~SL-qll~ale~LnLshNk~~~v-----------------------------------~~ 204 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMD-----ESL-QLLPALESLNLSHNKFTKV-----------------------------------DN 204 (1096)
T ss_pred HhhhhcchhhHHhHH-----HHH-HHHHHhhhhccchhhhhhh-----------------------------------HH
Confidence 555667777764322 122 1237789999999999741 11
Q ss_pred hc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCCh-HHHHHHHhhCCCCCCccEEEccCCCCChh-HH
Q 010572 371 FG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGV-ETAKFLSKLMPLAPELVEVNAGYNLMPLE-SL 446 (507)
Q Consensus 371 l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~-~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~-g~ 446 (507)
+. +.|++|||++|++.... ..=+..++|+.|+|++|.++. .|.. +..+|+.||+|+|-|.+- -.
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp-----~l~~~gc~L~~L~lrnN~l~tL~gie-------~LksL~~LDlsyNll~~hseL 272 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVP-----QLSMVGCKLQLLNLRNNALTTLRGIE-------NLKSLYGLDLSYNLLSEHSEL 272 (1096)
T ss_pred HHhcccccccccccchhcccc-----ccchhhhhheeeeecccHHHhhhhHH-------hhhhhhccchhHhhhhcchhh
Confidence 12 66888899998876422 111223458999999998753 2222 235799999999999753 33
Q ss_pred HHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHH
Q 010572 447 TIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFR 484 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~ 484 (507)
..|. +|. .|+.|+|.||++-.-+..+...+.-.
T Consensus 273 ~pLw-sLs----~L~~L~LeGNPl~c~p~hRaataqYl 305 (1096)
T KOG1859|consen 273 EPLW-SLS----SLIVLWLEGNPLCCAPWHRAATAQYL 305 (1096)
T ss_pred hHHH-HHH----HHHHHhhcCCccccCHHHHHHHHhHh
Confidence 3333 343 48899999998744444444444333
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.31 E-value=0.019 Score=61.28 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=23.7
Q ss_pred CCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHH
Q 010572 373 TSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFL 421 (507)
Q Consensus 373 ~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L 421 (507)
+.|++|.+.+|. +++.|...++...+ .|++|+|+.+. +++.+...+
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~---~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCP---SLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcC---cccEEeeecCccchHHHHHHH
Confidence 345666655555 56666555554332 26666666554 334444433
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.20 E-value=0.0061 Score=43.94 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=7.8
Q ss_pred CCCCccEEEccCCCCC
Q 010572 427 LAPELVEVNAGYNLMP 442 (507)
Q Consensus 427 ~n~~L~~L~Ls~N~l~ 442 (507)
..++|+.|++++|.|.
T Consensus 22 ~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 22 NLPNLETLNLSNNPIS 37 (44)
T ss_dssp TCTTSSEEEETSSCCS
T ss_pred CCCCCCEEEecCCCCC
Confidence 3344555555555544
No 56
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.16 E-value=0.003 Score=39.26 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=13.2
Q ss_pred CCccEEEccCCCCChhHHHHHH
Q 010572 429 PELVEVNAGYNLMPLESLTIIC 450 (507)
Q Consensus 429 ~~L~~L~Ls~N~l~~~g~~~L~ 450 (507)
++|++|+|++|.|+++|++.||
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4566666666666666666665
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.08 E-value=0.019 Score=65.16 Aligned_cols=146 Identities=18% Similarity=0.133 Sum_probs=82.2
Q ss_pred CCCCCEEEccCCCCCchHH-HHHHHHhccCCCCccEEECcCCCCCC-cccccccCCchhhcccCCCcCccccccchhHHH
Q 010572 288 GRSLCSLKLRHCHLDRDFG-RMVFSSLLEASSSLSILDLSGNSIGG-WLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~-~~L~~~L~~~~~~L~~LdLS~N~L~~-~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~ 365 (507)
-.+|++||+++...-..|- +.++ ...|+|++|.+++=.+.. ++. ....+.++|.+|++++-. ..
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig----~~LPsL~sL~i~~~~~~~~dF~--------~lc~sFpNL~sLDIS~Tn--I~ 186 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIG----TMLPSLRSLVISGRQFDNDDFS--------QLCASFPNLRSLDISGTN--IS 186 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHh----hhCcccceEEecCceecchhHH--------HHhhccCccceeecCCCC--cc
Confidence 3579999999877665553 2232 235899999988766652 211 122333444444443321 00
Q ss_pred HHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChH--HHHHHHhhCCCCCCccEEEccCCCC
Q 010572 366 SLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE--TAKFLSKLMPLAPELVEVNAGYNLM 441 (507)
Q Consensus 366 ~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~--g~~~L~~~L~~n~~L~~L~Ls~N~l 441 (507)
.+ .+++ .+|++|.+.+-.+.+. ..+- .|-..++|++||+|...-... .+...-+.-...|+|+.||.|++.+
T Consensus 187 nl-~GIS~LknLq~L~mrnLe~e~~--~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 187 NL-SGISRLKNLQVLSMRNLEFESY--QDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred Cc-HHHhccccHHHHhccCCCCCch--hhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 11 1222 5666666666555441 2222 233466788888887653332 2333333334457888888888888
Q ss_pred ChhHHHHHHH
Q 010572 442 PLESLTIICS 451 (507)
Q Consensus 442 ~~~g~~~L~~ 451 (507)
..+-++.+.+
T Consensus 263 ~~~~le~ll~ 272 (699)
T KOG3665|consen 263 NEEILEELLN 272 (699)
T ss_pred hHHHHHHHHH
Confidence 8777776654
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.82 E-value=0.0016 Score=69.36 Aligned_cols=220 Identities=22% Similarity=0.146 Sum_probs=113.7
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
...+..|++.++.. +.+... +..+.+|++|+|++|.++.-..-. . ...++.|.+.+|.+....
T Consensus 94 ~~~l~~l~l~~n~i----~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~---~-------l~~L~~L~l~~N~i~~~~-- 156 (414)
T KOG0531|consen 94 LKSLEALDLYDNKI----EKIENL-LSSLVNLQVLDLSFNKITKLEGLS---T-------LTLLKELNLSGNLISDIS-- 156 (414)
T ss_pred ccceeeeeccccch----hhcccc-hhhhhcchheeccccccccccchh---h-------ccchhhheeccCcchhcc--
Confidence 45567777776632 222111 235678888888888776421100 0 112555555555432221
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
-+..++.|+.+++++|.+.+.... .+ ...++++.+++..|.+...-. +.....+..+
T Consensus 157 --------~~~~l~~L~~l~l~~n~i~~ie~~----~~-~~~~~l~~l~l~~n~i~~i~~----------~~~~~~l~~~ 213 (414)
T KOG0531|consen 157 --------GLESLKSLKLLDLSYNRIVDIEND----EL-SELISLEELDLGGNSIREIEG----------LDLLKKLVLL 213 (414)
T ss_pred --------CCccchhhhcccCCcchhhhhhhh----hh-hhccchHHHhccCCchhcccc----------hHHHHHHHHh
Confidence 233477888888888888665441 01 234788888888888873211 0000111111
Q ss_pred ccccchhHHHHHHhhhc--C--CCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCc
Q 010572 356 RLLNLSHIAASLGKFFG--T--SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPEL 431 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~--~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L 431 (507)
.+.++. ...+ ..+. . .|+++++++|++...+ +.+.....+..|++++|.++... .+...+.+
T Consensus 214 ~l~~n~--i~~~-~~l~~~~~~~L~~l~l~~n~i~~~~-----~~~~~~~~l~~l~~~~n~~~~~~------~~~~~~~~ 279 (414)
T KOG0531|consen 214 SLLDNK--ISKL-EGLNELVMLHLRELYLSGNRISRSP-----EGLENLKNLPVLDLSSNRISNLE------GLERLPKL 279 (414)
T ss_pred hccccc--ceec-cCcccchhHHHHHHhcccCcccccc-----ccccccccccccchhhccccccc------cccccchH
Confidence 222221 0000 0011 1 3778888888887643 44666777888888888875431 12223345
Q ss_pred cEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 432 VEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 432 ~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
..+.+..|.+.......=..... ...+++...+.+|..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 280 SELWLNDNKLALSEAISQEYITS-AAPTLVTLTLELNPI 317 (414)
T ss_pred HHhccCcchhcchhhhhcccccc-ccccccccccccCcc
Confidence 66666666665332111111011 124566677777765
No 59
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.81 E-value=0.0049 Score=38.28 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=18.4
Q ss_pred CCCCCEEEccCCCCCchHHHHHH
Q 010572 288 GRSLCSLKLRHCHLDRDFGRMVF 310 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~~~L~ 310 (507)
+++|++|+|++|+|+++|++.++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 57899999999999999999876
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.79 E-value=0.017 Score=41.59 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=29.9
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCCh
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGV 415 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~ 415 (507)
++|++|+|++|+|++.. ..+....+|++|++++|.|++
T Consensus 1 ~~L~~L~l~~N~i~~l~-----~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-----PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG-----GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccC-----chHhCCCCCCEEEecCCCCCC
Confidence 46899999999999754 236678899999999999975
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.59 E-value=0.0025 Score=67.98 Aligned_cols=86 Identities=27% Similarity=0.167 Sum_probs=49.0
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch-hH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HI 363 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~ 363 (507)
+..+++|++|+||+|.|++.-. + ...+.|+.|++++|.|+..- .+.....|+.+.+.+++ ..
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~--l-----~~l~~L~~L~l~~N~i~~~~----------~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG--L-----STLTLLKELNLSGNLISDIS----------GLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred hhhhhcchheeccccccccccc--h-----hhccchhhheeccCcchhcc----------CCccchhhhcccCCcchhhh
Confidence 6677888888888888877532 2 12355888888888887421 12223334444454444 11
Q ss_pred HHHHHhhhcCCCcEEEeccCCCCc
Q 010572 364 AASLGKFFGTSVQVLNIGAIGLGS 387 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~l~~ 387 (507)
.......-.+.++.+++.+|.+..
T Consensus 177 ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 177 IENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred hhhhhhhhccchHHHhccCCchhc
Confidence 111000111677778888887754
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.55 E-value=0.031 Score=59.57 Aligned_cols=140 Identities=18% Similarity=0.078 Sum_probs=77.7
Q ss_pred CEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCC-CCCcccccccCCchhhcccCCCcCccccccc----h---hH
Q 010572 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL----S---HI 363 (507)
Q Consensus 292 ~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~-L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l----~---~~ 363 (507)
..+....+.+...+...+. ...+.|+.|.++.+. ++... +......++.|+.|.+... . ..
T Consensus 166 ~~~~~~~~~~~~~~~~~l~----~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 234 (482)
T KOG1947|consen 166 LSLSCCGSLLLDKILLRLL----SSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLL 234 (482)
T ss_pred eeeecccccccHHHHHHHH----hhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhH
Confidence 3344444455555444332 224778888887773 33210 1113334455555554321 0 11
Q ss_pred HHHHHhhhcCCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCCCC
Q 010572 364 AASLGKFFGTSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNLM 441 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l 441 (507)
...+.... ..|+.|+++.+. +++.|...++.. ...|++|.++++. ++++|...++... +.|++|+++++..
T Consensus 235 ~~~~~~~~-~~L~~l~l~~~~~isd~~l~~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~~~~---~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 235 LLLLLSIC-RKLKSLDLSGCGLVTDIGLSALASR---CPNLETLSLSNCSNLTDEGLVSIAERC---PSLRELDLSGCHG 307 (482)
T ss_pred hhhhhhhc-CCcCccchhhhhccCchhHHHHHhh---CCCcceEccCCCCccchhHHHHHHHhc---CcccEEeeecCcc
Confidence 11122221 667777777777 777777777665 4467777777666 6777777766543 5577777776555
Q ss_pred -ChhHHHHH
Q 010572 442 -PLESLTII 449 (507)
Q Consensus 442 -~~~g~~~L 449 (507)
++.|...+
T Consensus 308 ~~d~~l~~~ 316 (482)
T KOG1947|consen 308 LTDSGLEAL 316 (482)
T ss_pred chHHHHHHH
Confidence 45565544
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.013 Score=59.05 Aligned_cols=165 Identities=19% Similarity=0.119 Sum_probs=86.8
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch--hH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HI 363 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~--~~ 363 (507)
...+.+++|||..|.|++=.- ++. +..+.+.|+.|+||.|.++..+... -...++|++|.+ |.. ..
T Consensus 68 ~~~~~v~elDL~~N~iSdWse--I~~-ile~lP~l~~LNls~N~L~s~I~~l--------p~p~~nl~~lVL-NgT~L~w 135 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSE--IGA-ILEQLPALTTLNLSCNSLSSDIKSL--------PLPLKNLRVLVL-NGTGLSW 135 (418)
T ss_pred HHhhhhhhhhcccchhccHHH--HHH-HHhcCccceEeeccCCcCCCccccC--------cccccceEEEEE-cCCCCCh
Confidence 456789999999999987432 332 3355699999999999998643320 011222333322 111 01
Q ss_pred HHHHHhhhc--CCCcEEEeccCCC-----CchhHHHHHHh---hcCC-----------------CCCCEEeccCCCCChH
Q 010572 364 AASLGKFFG--TSVQVLNIGAIGL-----GSSGFRVLQDG---VTKE-----------------LKLVNINISKNRGGVE 416 (507)
Q Consensus 364 ~~~L~~~l~--~~L~~L~Ls~n~l-----~~~G~~~L~~a---L~~n-----------------~~L~~LdLs~N~i~~~ 416 (507)
+. +..++. +.+++|.+|.|.+ .+.......-+ +..+ +++..+-+..|.+.+.
T Consensus 136 ~~-~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~ 214 (418)
T KOG2982|consen 136 TQ-STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTE 214 (418)
T ss_pred hh-hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccch
Confidence 00 001111 4456666666622 12211111111 1111 2233334444444433
Q ss_pred HHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 417 TAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 417 g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+. +.....|.+-.|+|+.|+|++...- ++|..- +.|..|.+..|++
T Consensus 215 s~e---k~se~~p~~~~LnL~~~~idswasv---D~Ln~f-~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 215 SSE---KGSEPFPSLSCLNLGANNIDSWASV---DALNGF-PQLVDLRVSENPL 261 (418)
T ss_pred hhc---ccCCCCCcchhhhhcccccccHHHH---HHHcCC-chhheeeccCCcc
Confidence 222 2223346678899999999875432 445433 5788888888886
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.82 E-value=0.015 Score=52.61 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=29.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcC-CCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~-n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
..|...+|++|.+.+.. +-+.. -..++.|||++|.|.+--.+ ++.. +.|+.||++.|.|..
T Consensus 53 ~el~~i~ls~N~fk~fp-----~kft~kf~t~t~lNl~~neisdvPeE-~Aam----~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFP-----KKFTIKFPTATTLNLANNEISDVPEE-LAAM----PALRSLNLRFNPLNA 114 (177)
T ss_pred ceEEEEecccchhhhCC-----HHHhhccchhhhhhcchhhhhhchHH-Hhhh----HHhhhcccccCcccc
Confidence 44555556655554322 11211 22455666666665543222 3322 456666666666653
No 65
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.52 E-value=0.01 Score=64.40 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=73.5
Q ss_pred HHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch
Q 010572 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS 361 (507)
Q Consensus 282 ~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~ 361 (507)
..++.++..|++|||+.|++.--... +| .+-|+.|-+++|+++..-. -++...+|..|....|.
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS~lp~~-lC------~lpLkvli~sNNkl~~lp~---------~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLSHLPDG-LC------DLPLKVLIVSNNKLTSLPE---------EIGLLPTLAHLDVSKNE 177 (722)
T ss_pred chhhhhhhHHHHhhhccchhhcCChh-hh------cCcceeEEEecCccccCCc---------ccccchhHHHhhhhhhh
Confidence 34566778899999999998765442 33 2679999999999984211 12222223333333332
Q ss_pred hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 362 HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 362 ~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
.. .+..-++ .+|+.|+++.|++.+.- +-+. ...|..||+|.|+|..-=+ -+.....|++|-|.+|
T Consensus 178 -i~-slpsql~~l~slr~l~vrRn~l~~lp-----~El~-~LpLi~lDfScNkis~iPv-----~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 178 -IQ-SLPSQLGYLTSLRDLNVRRNHLEDLP-----EELC-SLPLIRLDFSCNKISYLPV-----DFRKMRHLQVLQLENN 244 (722)
T ss_pred -hh-hchHHhhhHHHHHHHHHhhhhhhhCC-----HHHh-CCceeeeecccCceeecch-----hhhhhhhheeeeeccC
Confidence 11 1111111 45666666666654322 1111 3347777777777643211 1223355777777777
Q ss_pred CCChhH
Q 010572 440 LMPLES 445 (507)
Q Consensus 440 ~l~~~g 445 (507)
+|..--
T Consensus 245 PLqSPP 250 (722)
T KOG0532|consen 245 PLQSPP 250 (722)
T ss_pred CCCCCh
Confidence 776443
No 66
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=94.24 E-value=0.07 Score=54.59 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=73.6
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccC--CCCChhHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY--NLMPLESLTIIC 450 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~--N~l~~~g~~~L~ 450 (507)
+.++...|.+.+..+.-..+++..|..|.+|++|++++|.|++.|.-.+-+++..|.+|+++..-+ =.+|....+.++
T Consensus 227 t~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~al~~n~tl~el~~dnqrq~lg~~vemeia 306 (353)
T KOG3735|consen 227 THVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLRALQSNKSLTELKNDNQRQVLGNAVEMEIA 306 (353)
T ss_pred chhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHHHHhccchhhHhhhhhHHhhcccHHHHHHH
Confidence 667777888888888888889999999999999999999999999999999999999998876642 145777778888
Q ss_pred HHHhcCCCCccEE
Q 010572 451 SALKVAKGHLQRL 463 (507)
Q Consensus 451 ~aL~~~~~~L~~L 463 (507)
..|.++. +|-..
T Consensus 307 ~~leen~-sllk~ 318 (353)
T KOG3735|consen 307 LELEENA-SLLKF 318 (353)
T ss_pred HHHHhcc-ccccc
Confidence 8888874 34444
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.40 E-value=0.0078 Score=65.26 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=25.8
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 430 ELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 430 ~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.|..||+|+|.+.---+. ++.. .+|+.|-|..|.+
T Consensus 212 pLi~lDfScNkis~iPv~-----fr~m-~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 212 PLIRLDFSCNKISYLPVD-----FRKM-RHLQVLQLENNPL 246 (722)
T ss_pred ceeeeecccCceeecchh-----hhhh-hhheeeeeccCCC
Confidence 489999999999743221 3333 5799999999997
No 68
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=92.27 E-value=0.32 Score=42.12 Aligned_cols=64 Identities=25% Similarity=0.454 Sum_probs=50.2
Q ss_pred cccCCChhhHHHHHhcCCchhhhhhhccCCccccCCCCCCCcccccCcccccCCCccHHHHHHHhcccCc-ccCCCC--C
Q 010572 28 YVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG-FTDQIE--P 104 (507)
Q Consensus 28 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~w~~-~~~~~~--~ 104 (507)
.|.++|-+++.-|+.+.+|.-|..++..=| .+...++ .-|+++|+..-|. ...+.. +
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np-----~l~~~td---------------eLW~~~i~rdFp~~~~~~~~~~~ 62 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNP-----HLIEDTD---------------ELWKKLIKRDFPEESKRQKPKEP 62 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCC-----CcchhhH---------------HHHHHHHHhHCcChhhccccccc
Confidence 367899999999999999999999998877 6622221 3699999999987 222222 6
Q ss_pred CcHHHHH
Q 010572 105 VDWQQRY 111 (507)
Q Consensus 105 ~~w~~~~ 111 (507)
.+|.++|
T Consensus 63 ~~Wr~~Y 69 (109)
T PF06881_consen 63 ESWRELY 69 (109)
T ss_pred chHHHHH
Confidence 7999999
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.84 E-value=0.091 Score=47.69 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=17.1
Q ss_pred CCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCC
Q 010572 374 SVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGG 414 (507)
Q Consensus 374 ~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~ 414 (507)
+++.|||++|.|.+.-.+ + .....|+.||++.|.+.
T Consensus 78 t~t~lNl~~neisdvPeE-~----Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEE-L----AAMPALRSLNLRFNPLN 113 (177)
T ss_pred hhhhhhcchhhhhhchHH-H----hhhHHhhhcccccCccc
Confidence 455555555555443322 2 22334555555555554
No 70
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=91.77 E-value=0.1 Score=51.72 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhccCCCC--CCcccCCChhhHHHHHhcCCchhhhhhhccCCcccc-CCCCCCCcccccCcccccCCCc
Q 010572 7 LISLAALAVKRELLLGDDV--IPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDG-DDCGSPDYCFENGRKRGRYGNF 83 (507)
Q Consensus 7 l~~~c~~~~~~~~~~~~~~--~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
.+-+-.|.+..+..-.+.. -|.+.+||.|.+--|+-|||.. ..|...+-...| +.+..++
T Consensus 178 ~til~~qqv~~~iqi~~~~~~~ltl~dLP~e~vl~Il~rlsDh--~dL~s~aqa~etl~~l~~e~--------------- 240 (332)
T KOG3926|consen 178 ETILRWQQVLSQIQITEPDPAGLTLHDLPLECVLNILLRLSDH--RDLESLAQAWETLAKLSEER--------------- 240 (332)
T ss_pred HHHHHHHHHHHhhcccCCCcCCCCcccchHHHHHHHHHHccCc--chHHHHHHhhHHHHHHHHHH---------------
Confidence 4445667777777665553 4789999999999999999964 111111111111 1222222
Q ss_pred cHHHHHHHhcccCc--------ccCCCCCCcHHHHHHH
Q 010572 84 NTVWKKLFKTRWSG--------FTDQIEPVDWQQRYWE 113 (507)
Q Consensus 84 ~~~w~~~~~~~w~~--------~~~~~~~~~w~~~~~e 113 (507)
.-||.+|+-|... +.+.| ..|||||||.
T Consensus 241 -~iWkkLcqfHF~erQi~~~l~l~k~~-q~dWkqmyf~ 276 (332)
T KOG3926|consen 241 -RIWKKLCQFHFNERQIHTILILSKKG-QKDWKQMYFQ 276 (332)
T ss_pred -HHHHHHHHHHhhHHHHHHhhhhcccc-chhHHHHHHH
Confidence 2599999999876 22222 5799999953
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.67 E-value=0.03 Score=56.16 Aligned_cols=105 Identities=20% Similarity=0.224 Sum_probs=65.6
Q ss_pred CCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHH
Q 010572 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASL 367 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L 367 (507)
..+.+.||.-++.|.|.. +|+- .+.|+.|.||-|.|+..-+ +..|
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~k----Mp~lEVLsLSvNkIssL~p----------l~rC------------------ 62 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEK----MPLLEVLSLSVNKISSLAP----------LQRC------------------ 62 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHh----cccceeEEeeccccccchh----------HHHH------------------
Confidence 446778888889888864 3432 3889999999998875211 1111
Q ss_pred HhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEE
Q 010572 368 GKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 368 ~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
+.|++|.|+.|.|.+.. .|. -|...++|+.|+|..|. -+..|...=..+|...|+|+.||
T Consensus 63 -----trLkElYLRkN~I~sld--EL~-YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 63 -----TRLKELYLRKNCIESLD--ELE-YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -----HHHHHHHHHhcccccHH--HHH-HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 34566666666665532 221 13445677888887776 44455556566666667777665
No 72
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=91.46 E-value=0.16 Score=59.40 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=61.8
Q ss_pred CcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcc
Q 010572 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (507)
Q Consensus 198 ~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l 277 (507)
+|++|-+.++.. ....+...++..++.|+.|||++|.=..+.+..+ ..|. .++.|+++...+.
T Consensus 546 ~L~tLll~~n~~--~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li-------~LryL~L~~t~I~------- 608 (889)
T KOG4658|consen 546 KLRTLLLQRNSD--WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELV-------HLRYLDLSDTGIS------- 608 (889)
T ss_pred ccceEEEeecch--hhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhh-------hhhcccccCCCcc-------
Confidence 577777766531 1333344455677999999999864333333332 1111 2444544433321
Q ss_pred hHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCC
Q 010572 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (507)
Q Consensus 278 ~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~ 329 (507)
.+...|..++.|.+||+..+.-....+... ...++|++|.|-.-.
T Consensus 609 --~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~-----~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 609 --HLPSGLGNLKKLIYLNLEVTGRLESIPGIL-----LELQSLRVLRLPRSA 653 (889)
T ss_pred --ccchHHHHHHhhheeccccccccccccchh-----hhcccccEEEeeccc
Confidence 345557778889999998877543332211 224888988886554
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.05 E-value=0.12 Score=51.23 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=41.9
Q ss_pred CCCcEEEeccCCCCc-hhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 373 TSVQVLNIGAIGLGS-SGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~-~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
+.|++|.++.|.+.. .|...+++.. ..|++|+||+|.|.+ ...+ +-++..++|.+|++..|..+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~---P~l~~l~ls~Nki~~--lstl-~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKA---PNLKVLNLSGNKIKD--LSTL-RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcccccccceehhhhC---CceeEEeecCCcccc--cccc-chhhhhcchhhhhcccCCcc
Confidence 678888998886543 3445555543 678889999998875 1111 11222356888888887775
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=87.56 E-value=1.9 Score=46.10 Aligned_cols=134 Identities=15% Similarity=0.262 Sum_probs=70.2
Q ss_pred CCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCC-CC
Q 010572 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC-HL 301 (507)
Q Consensus 223 ~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N-~L 301 (507)
.+.++++|++++|.+..- +. . ...++.|.++.+.-+. .++. .+ .++|++|++++| ++
T Consensus 50 ~~~~l~~L~Is~c~L~sL--P~---------L-P~sLtsL~Lsnc~nLt----sLP~----~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 50 EARASGRLYIKDCDIESL--PV---------L-PNELTEITIENCNNLT----TLPG----SI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred HhcCCCEEEeCCCCCccc--CC---------C-CCCCcEEEccCCCCcc----cCCc----hh--hhhhhheEccCcccc
Confidence 446788888888865421 11 1 1246666665433211 1111 12 247889999987 44
Q ss_pred CchHHHHHHHHhccCCCCccEEECcCCCCCC--cccccccCCchhhcccCCCcCccccccch-hHHHHHHhhhcCCCcEE
Q 010572 302 DRDFGRMVFSSLLEASSSLSILDLSGNSIGG--WLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HIAASLGKFFGTSVQVL 378 (507)
Q Consensus 302 ~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~--~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~~~~L~~~l~~~L~~L 378 (507)
. .+ + .+|++|+|+.|.+.. .++ .+|++|.+-+.. .....++..+..+|++|
T Consensus 108 ~---------sL--P-~sLe~L~L~~n~~~~L~~LP--------------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L 161 (426)
T PRK15386 108 S---------GL--P-ESVRSLEIKGSATDSIKNVP--------------NGLTSLSINSYNPENQARIDNLISPSLKTL 161 (426)
T ss_pred c---------cc--c-cccceEEeCCCCCcccccCc--------------chHhheeccccccccccccccccCCcccEE
Confidence 2 11 2 668888887766542 111 123444432211 00111222344688888
Q ss_pred EeccCCCCchhHHHHHHhhcCCCCCCEEeccCC
Q 010572 379 NIGAIGLGSSGFRVLQDGVTKELKLVNINISKN 411 (507)
Q Consensus 379 ~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N 411 (507)
++++|.... +...|| .+|+.|+++.|
T Consensus 162 ~Is~c~~i~-----LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 162 SLTGCSNII-----LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EecCCCccc-----Cccccc--ccCcEEEeccc
Confidence 888877541 222344 47888888776
No 75
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=86.57 E-value=0.43 Score=33.92 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=27.3
Q ss_pred hhhhhhhhhccCCcccccchhhhhccchhh-cccccccccccccceec
Q 010572 124 AELVVLPSFRGLISDINISDTILNYIGYEQ-QMNHLACDYSKLSYHCQ 170 (507)
Q Consensus 124 ~e~~~~~~~~~~l~di~~~~~~l~~~~~~~-~~~c~~~~l~~l~~~c~ 170 (507)
+|++++..|+..|.. .|..++..|.... .++|.| -||.|.
T Consensus 3 ~d~~aLl~~k~~l~~--~~~~~l~~W~~~~~~~~C~W-----~GV~Cd 43 (43)
T PF08263_consen 3 QDRQALLAFKKSLNN--DPSGVLSSWNPSSDSDPCSW-----SGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHCTT---SC-CCCTT--TT--S-CCCS-----TTEEE-
T ss_pred HHHHHHHHHHHhccc--ccCcccccCCCcCCCCCeee-----ccEEeC
Confidence 789999999999984 1567899997653 799999 377773
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.03 E-value=0.83 Score=28.74 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=13.1
Q ss_pred CCccEEEccCCC-CChhHHHHHH
Q 010572 429 PELVEVNAGYNL-MPLESLTIIC 450 (507)
Q Consensus 429 ~~L~~L~Ls~N~-l~~~g~~~L~ 450 (507)
++|++|+|+++. ++|.|+..|+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 456666666653 6666665554
No 77
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=85.81 E-value=0.99 Score=43.54 Aligned_cols=88 Identities=14% Similarity=0.002 Sum_probs=46.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|..|.|++|+|+..+ ..|..+ ...|+.|-|.+|.|..-|- | .-+..+|+|+.|.+=.|++....--. +.+
T Consensus 64 ~rL~tLll~nNrIt~I~-p~L~~~---~p~l~~L~LtnNsi~~l~d--l-~pLa~~p~L~~Ltll~Npv~~k~~YR-~yv 135 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRID-PDLDTF---LPNLKTLILTNNSIQELGD--L-DPLASCPKLEYLTLLGNPVEHKKNYR-LYV 135 (233)
T ss_pred cccceEEecCCcceeec-cchhhh---ccccceEEecCcchhhhhh--c-chhccCCccceeeecCCchhcccCce-eEE
Confidence 66777777777776543 122222 3456777777776632110 1 11234467777777777776532111 111
Q ss_pred HhcCCCCccEEEecCCC
Q 010572 453 LKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~ 469 (507)
+.. -++|+.||..+-.
T Consensus 136 l~k-lp~l~~LDF~kVt 151 (233)
T KOG1644|consen 136 LYK-LPSLRTLDFQKVT 151 (233)
T ss_pred EEe-cCcceEeehhhhh
Confidence 211 2467777776544
No 78
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=84.32 E-value=0.82 Score=44.07 Aligned_cols=65 Identities=25% Similarity=0.136 Sum_probs=37.1
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS 361 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~ 361 (507)
|...+.|+.|.|++|.|...+.. |. +..++|.+|.|.+|+|-.... + .-+..++.|+.|++++|.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~-L~----~~~p~l~~L~LtnNsi~~l~d-l------~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPD-LD----TFLPNLKTLILTNNSIQELGD-L------DPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEecCCcceeeccc-hh----hhccccceEEecCcchhhhhh-c------chhccCCccceeeecCCc
Confidence 45566777777777777665543 21 224667777777777652100 0 034455566666666654
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.64 E-value=1.1 Score=28.09 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=19.2
Q ss_pred CCCCCEEEccCCC-CCchHHHHHH
Q 010572 288 GRSLCSLKLRHCH-LDRDFGRMVF 310 (507)
Q Consensus 288 ~~sL~~L~LS~N~-L~~~g~~~L~ 310 (507)
+++|++|+|++|. ++|.|+..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 4789999999985 9999988764
No 80
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.26 E-value=0.52 Score=46.84 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=34.8
Q ss_pred CCcCccccccc--h--hHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCC
Q 010572 350 KSLQSLRLLNL--S--HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGG 414 (507)
Q Consensus 350 ~~L~~L~ll~l--~--~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~ 414 (507)
+.|+.|.+.+| + .+...++... ++|++|+|++|+|.+. +.+ ..++....|..|++.+|..+
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki~~l--stl-~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKIKDL--STL-RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcccccccceehhhhC-CceeEEeecCCccccc--ccc-chhhhhcchhhhhcccCCcc
Confidence 34566666666 2 3333444433 7788888888888751 111 12333445778888777643
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.23 E-value=1.4 Score=42.46 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=66.2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccC-CCCChhHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGY-NLMPLESLTIIC 450 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~-N~l~~~g~~~L~ 450 (507)
..++.+|=+++.|.-+|+..|- ...+++.|.+-++. +.+.+.+.++.. .++|+.|+++. -.|++.|+..|-
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~----~l~~i~~l~l~~ck~~dD~~L~~l~~~---~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLR----DLRSIKSLSLANCKYFDDWCLERLGGL---APSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHh----ccchhhhheeccccchhhHHHHHhccc---ccchheeeccCCCeechhHHHHHH
Confidence 5689999999999999988754 45668888887765 888998888873 47899999995 568999987664
Q ss_pred HHHhcCCCCccEEEecCCC
Q 010572 451 SALKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 451 ~aL~~~~~~L~~LdL~~N~ 469 (507)
. + .+|+.|.|.+=.
T Consensus 174 ~-l----knLr~L~l~~l~ 187 (221)
T KOG3864|consen 174 K-L----KNLRRLHLYDLP 187 (221)
T ss_pred H-h----hhhHHHHhcCch
Confidence 2 2 468888886544
No 82
>PRK15386 type III secretion protein GogB; Provisional
Probab=82.39 E-value=2.6 Score=45.07 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=78.1
Q ss_pred HHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCC-CCCCcccccccCCchhhcccCCCcCccccccc
Q 010572 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNL 360 (507)
Q Consensus 282 ~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N-~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l 360 (507)
.+-+..+..+++|++++|.|..-. .+ + ++|++|.+++| .++. ++. .+ ..+|+.|.+.++
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~sLP------~L--P-~sLtsL~Lsnc~nLts-LP~--------~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIESLP------VL--P-NELTEITIENCNNLTT-LPG--------SI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCcccC------CC--C-CCCcEEEccCCCCccc-CCc--------hh--hhhhhheEccCc
Confidence 344667799999999999876532 11 3 68999999875 3331 110 11 123555555544
Q ss_pred hhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 361 SHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 361 ~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
..+ ..+..+|+.|+|+.+.....+ .||. +|+.|.+.+++ .... .+...+ -++|+.|++++|
T Consensus 105 s~L-----~sLP~sLe~L~L~~n~~~~L~------~LPs--sLk~L~I~~~n~~~~~---~lp~~L--PsSLk~L~Is~c 166 (426)
T PRK15386 105 PEI-----SGLPESVRSLEIKGSATDSIK------NVPN--GLTSLSINSYNPENQA---RIDNLI--SPSLKTLSLTGC 166 (426)
T ss_pred ccc-----cccccccceEEeCCCCCcccc------cCcc--hHhheecccccccccc---cccccc--CCcccEEEecCC
Confidence 211 123367888888766654321 1332 46777775432 1110 011111 136999999987
Q ss_pred CCChhHHHHHHHHHhcCCCCccEEEecCC
Q 010572 440 LMPLESLTIICSALKVAKGHLQRLDLTGN 468 (507)
Q Consensus 440 ~l~~~g~~~L~~aL~~~~~~L~~LdL~~N 468 (507)
.... +-..+ | .+|+.|+++.|
T Consensus 167 ~~i~-----LP~~L--P-~SLk~L~ls~n 187 (426)
T PRK15386 167 SNII-----LPEKL--P-ESLQSITLHIE 187 (426)
T ss_pred Cccc-----Ccccc--c-ccCcEEEeccc
Confidence 7542 11112 2 47899998766
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.29 E-value=1.2 Score=42.80 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=47.9
Q ss_pred CCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccC
Q 010572 373 TSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGY 438 (507)
Q Consensus 373 ~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~ 438 (507)
..|+.|.+.+|. ++|.|...|+. -..+|+.|+|++|. ||+.|...|.+. ++|+-|.+..
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~~l----knLr~L~l~~ 185 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLLKL----KNLRRLHLYD 185 (221)
T ss_pred chhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHHHh----hhhHHHHhcC
Confidence 778888898887 78888888877 35689999999885 999998887764 6788887763
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=82.20 E-value=0.97 Score=25.69 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=4.5
Q ss_pred CCCEEEccCCCC
Q 010572 290 SLCSLKLRHCHL 301 (507)
Q Consensus 290 sL~~L~LS~N~L 301 (507)
+|+.|+|++|+|
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 345555555544
No 85
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.90 E-value=0.86 Score=46.02 Aligned_cols=39 Identities=21% Similarity=0.057 Sum_probs=18.0
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
..++.|+.|.||-|+|..-..- ...+.|++|.|..|.|.
T Consensus 38 ~kMp~lEVLsLSvNkIssL~pl-------~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAPL-------QRCTRLKELYLRKNCIE 76 (388)
T ss_pred HhcccceeEEeeccccccchhH-------HHHHHHHHHHHHhcccc
Confidence 4455555555555555442221 11244555555555554
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=67.91 E-value=2.1 Score=25.84 Aligned_cols=13 Identities=54% Similarity=0.828 Sum_probs=11.3
Q ss_pred CccEEECcCCCCC
Q 010572 319 SLSILDLSGNSIG 331 (507)
Q Consensus 319 ~L~~LdLS~N~L~ 331 (507)
+|++|||++|+|+
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 5889999999888
No 87
>cd03717 SOCS_SOCS_like SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.
Probab=67.49 E-value=13 Score=25.94 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 010572 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (507)
Q Consensus 3 ~~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~ 41 (507)
.||+|..||-.+|-+++.. +.+. --.||+.+++.+.
T Consensus 2 ~~~sLq~LCR~~Ir~~~~~--~~i~-~LpLP~~Lk~yL~ 37 (39)
T cd03717 2 SVRSLQHLCRFVIRQCTRR--DLID-QLPLPRRLKDYLK 37 (39)
T ss_pred CCCCHHHHHHHHHHHHccc--cccc-cCCCCHHHHHHHH
Confidence 5799999999999999842 1111 1356677776654
No 88
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=64.37 E-value=5.7 Score=46.72 Aligned_cols=43 Identities=26% Similarity=0.159 Sum_probs=25.3
Q ss_pred HHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 284 FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 284 ~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
++..++.|..||||+|.=..+-++.+. ..-+|+.|+|++..+.
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP~~I~-----~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLPSSIG-----ELVHLRYLDLSDTGIS 608 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCChHHh-----hhhhhhcccccCCCcc
Confidence 355666777777776554444444332 2355667777776665
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.53 E-value=9.7 Score=41.87 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=52.5
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh---hHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL---ESLTII 449 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~---~g~~~L 449 (507)
..+..++|++|++-+.. .++..-...++|+.|+||+|..-......+.+. ....|++|-+.+|++-. .-.+.+
T Consensus 218 p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cceeeeecccchhhchh--hhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHHH
Confidence 77888999999986532 233322346789999999994333333444433 22358999999999953 222333
Q ss_pred HHHHhcCCCCccEEE
Q 010572 450 CSALKVAKGHLQRLD 464 (507)
Q Consensus 450 ~~aL~~~~~~L~~Ld 464 (507)
. ++++--++|..||
T Consensus 294 ~-~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 S-AIRELFPKLLRLD 307 (585)
T ss_pred H-HHHHhcchheeec
Confidence 3 5555444555553
No 90
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=57.19 E-value=19 Score=25.86 Aligned_cols=36 Identities=25% Similarity=0.166 Sum_probs=24.1
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHH
Q 010572 2 VKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDIL 40 (507)
Q Consensus 2 ~~~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~ 40 (507)
.++|||.++|-.+|.++...+ .+.. -.||.-+++.+
T Consensus 1 ~k~~SLQ~LCR~~I~~~t~~~--~I~~-LPLP~~Lk~yL 36 (43)
T cd03742 1 NKVLSLQDLCCRAIVSCTPVY--LIDK-LPLPVSIKSHL 36 (43)
T ss_pred CccccHHHHHHHHHHHhCCcc--hhhh-CCCCHHHHHHH
Confidence 378999999999999998421 1111 24556666653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.67 E-value=19 Score=39.72 Aligned_cols=85 Identities=26% Similarity=0.246 Sum_probs=51.6
Q ss_pred CCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCC--CCChhHHHHHHHHHhcCCCCccEEEecCCCC-CCCccHH
Q 010572 401 LKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYN--LMPLESLTIICSALKVAKGHLQRLDLTGNNW-ELQPSHV 477 (507)
Q Consensus 401 ~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N--~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~-~~~~~~~ 477 (507)
..+..++|++|++-.- ..++.+-...|+|..|+||.| .+..+- .+ ..++ .-.|++|.|.||++ +--..-.
T Consensus 218 p~i~sl~lsnNrL~~L--d~~sslsq~apklk~L~LS~N~~~~~~~~--el-~K~k--~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHL--DALSSLSQIAPKLKTLDLSHNHSKISSES--EL-DKLK--GLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred cceeeeecccchhhch--hhhhHHHHhcchhheeecccchhhhcchh--hh-hhhc--CCCHHHeeecCCccccchhhhH
Confidence 4688999999997432 233444445689999999999 444321 11 1222 34699999999998 1112224
Q ss_pred HHHHHHHHcCCCeEE
Q 010572 478 SMLSEFRHNGLPILI 492 (507)
Q Consensus 478 ~~l~~~~~~~~~i~~ 492 (507)
..+.++.+-=|-+++
T Consensus 291 ~yv~~i~~~FPKL~~ 305 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLR 305 (585)
T ss_pred HHHHHHHHhcchhee
Confidence 455555555444433
No 92
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=55.26 E-value=29 Score=25.00 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=25.1
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 010572 2 VKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (507)
Q Consensus 2 ~~~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~ 41 (507)
+.||+|-.||-..|.++... +.+-. ..||.-+++.+.
T Consensus 1 ~~~~sLQhLCR~tI~~~~~~--~~i~~-lpLP~~LKdyL~ 37 (43)
T cd03735 1 VRVRPLQELCRKSIVATFGR--ENLAR-IPLNPVLKDYLK 37 (43)
T ss_pred CCccCHHHHHHHHHHHhcCc--ccccc-CcCCHHHHHHHH
Confidence 46899999999999999641 11111 266777776654
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=54.12 E-value=11 Score=23.30 Aligned_cols=14 Identities=43% Similarity=0.593 Sum_probs=7.8
Q ss_pred CCccEEECcCCCCC
Q 010572 318 SSLSILDLSGNSIG 331 (507)
Q Consensus 318 ~~L~~LdLS~N~L~ 331 (507)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=54.12 E-value=11 Score=23.30 Aligned_cols=14 Identities=43% Similarity=0.593 Sum_probs=7.8
Q ss_pred CCccEEECcCCCCC
Q 010572 318 SSLSILDLSGNSIG 331 (507)
Q Consensus 318 ~~L~~LdLS~N~L~ 331 (507)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 95
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=52.53 E-value=24 Score=25.22 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHH
Q 010572 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDIL 40 (507)
Q Consensus 3 ~~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~ 40 (507)
++|||..||-.+|-++... .-.+++||-.+++.+
T Consensus 2 ~v~SLQHLCR~~In~~~~~----~~~~~~LP~~Lk~yL 35 (42)
T cd03737 2 SVSTLQHLCRKTVNGHLDS----YEKRTQLPLPIKEFL 35 (42)
T ss_pred CcccHHHHHHHHHHHhcCc----ccchhhccHHHHHHH
Confidence 5799999999999998741 112567777666553
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=46.38 E-value=17 Score=23.16 Aligned_cols=14 Identities=50% Similarity=0.586 Sum_probs=9.1
Q ss_pred CCccEEECcCCCCC
Q 010572 318 SSLSILDLSGNSIG 331 (507)
Q Consensus 318 ~~L~~LdLS~N~L~ 331 (507)
.+|+.|+|+.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 97
>PF07525 SOCS_box: SOCS box; InterPro: IPR001496 The SOCS box was first identified in SH2-domain-containing proteins of the suppressor of cytokines signalling (SOCS) family [] but was later also found in: the WSB (WD-40-repeat-containing proteins with a SOCS box) family, the SSB (SPRY domain-containing proteins with a SOCS box) family, the ASB (ankyrin-repeat-containing proteins with a SOCS box) family, and ras and ras-like GTPases []. The SOCS box found in these proteins is an about 50 amino acid carboxy-terminal domain composed of two blocks of well-conserved residues separated by between 2 and 10 non-conserved residues []. The C-terminal conserved region is an L/P-rich sequence of unknown function, whereas the N-terminal conserved region is a consensus BC box [], which binds to the Elongin BC complex [, ]. It has been proposed that this association could couple bound proteins to the ubiquitination or proteasomal compartments [].; GO: 0035556 intracellular signal transduction; PDB: 2XAI_A 2JZ3_A 2C9W_A 2FNJ_A 2IZV_A.
Probab=39.86 E-value=32 Score=23.99 Aligned_cols=35 Identities=37% Similarity=0.472 Sum_probs=20.5
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCcc--cCCChhhHHHH
Q 010572 4 APSLISLAALAVKRELLLGDDVIPYV--YELPADLFDIL 40 (507)
Q Consensus 4 ~p~l~~~c~~~~~~~~~~~~~~~p~~--~~l~~~~~~~~ 40 (507)
||||.++|-.+|.+.+... ..+.+ -.||+.+.+.+
T Consensus 1 p~sLq~LCR~~Ir~~l~~~--~~~~i~~LpLP~~L~~yL 37 (40)
T PF07525_consen 1 PPSLQHLCRLAIRRSLGKK--GLERIDKLPLPPRLKDYL 37 (40)
T ss_dssp ---HHHHHHHHHHHHSSCC--HGGGGGGSSS-HHHHHHH
T ss_pred CccHHHHHHHHHHHHhChh--hccccccCCCCHHHHHHH
Confidence 5899999999999998522 11234 34666666554
No 98
>cd03587 SOCS SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins with a SOCS box), and WSBs (WD40 repeat-containing proteins with a SOCS box), as well as, other miscellaneous proteins. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=39.16 E-value=66 Score=22.51 Aligned_cols=37 Identities=41% Similarity=0.442 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHHHHHhccCC-CCCCcccCCChhhHHHHH
Q 010572 4 APSLISLAALAVKRELLLGD-DVIPYVYELPADLFDILL 41 (507)
Q Consensus 4 ~p~l~~~c~~~~~~~~~~~~-~~~p~~~~l~~~~~~~~~ 41 (507)
+|+|.++|--+|-+++-... +.++. -.||..+++.+.
T Consensus 2 p~sLq~LCR~~Ir~~lg~~~~~~i~~-LpLP~~Lk~yL~ 39 (41)
T cd03587 2 PRSLQHLCRLAIRRCLGKRRLDLIDK-LPLPPRLKDYLL 39 (41)
T ss_pred CcCHHHHHHHHHHHHHCccccccccc-CCCCHHHHHHHc
Confidence 69999999999999984210 11111 256677776654
No 99
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=35.88 E-value=87 Score=22.25 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 010572 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (507)
Q Consensus 3 ~~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~ 41 (507)
.+|||..||--+|.+.+.. +.+ .--.||+.+++.+.
T Consensus 6 ~~~sLqhLCR~~I~~~~~~--~~i-~~LpLP~~lk~yL~ 41 (43)
T smart00253 6 NVPSLQHLCRFTIRRCTRT--DQI-KTLPLPPKLKDYLS 41 (43)
T ss_pred CCCCHHHHHHHHHHHHcCC--cCc-ccCCCCHHHHHHHH
Confidence 5699999999999999852 111 12356677776654
No 100
>cd03736 SOCS_SOCS2 SOCS (suppressors of cytokine signaling) box of SOCS2-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS2 has recently been shown to regulate neuronal differentiation by controlling expression of a neurogenic transcription factor, Neurogenin-1. SOCS2 binds to GH receptors and inhibits the activation of STAT5b induced by GH. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=35.45 E-value=85 Score=22.24 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 010572 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (507)
Q Consensus 3 ~~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~ 41 (507)
++|||..||=.+|.+... .++. -.||.-+++.+.
T Consensus 2 ~~~sLQhLCR~~I~~~~~----~i~~-LpLP~~Lk~yL~ 35 (41)
T cd03736 2 STPSLQHLCRITINKCTR----QIQE-LPLPTRLKDYLT 35 (41)
T ss_pred CCCCHHHHHHHHHHHhcC----CCCc-CCCCHHHHHHHH
Confidence 479999999999988643 3333 467777776654
No 101
>cd03734 SOCS_CIS1 SOCS (suppressors of cytokine signaling) box of CIS (cytokine-inducible SH2 protein) 1-like proteins. Together with the SOCS proteins, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. CIS1, like SOCS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. CIS1 binds to cytokine receptors at STAT5-docking sites, which prohibits recruitment of STAT5 to the receptor signaling complex and results in the down-regulation of activation by STAT5.
Probab=35.29 E-value=90 Score=22.20 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 010572 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (507)
Q Consensus 3 ~~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~ 41 (507)
++|||..||=.+|.+... .+. -..||+-+++.+.
T Consensus 2 ~~~sLQHLCR~~I~~~~~----~i~-~LpLP~~L~~yL~ 35 (41)
T cd03734 2 SARSLQHLCRLVINRLVT----DVD-CLPLPRRMADYLR 35 (41)
T ss_pred CCccHHHHHHHHHHHhcC----Ccc-cCCCCHHHHHHHH
Confidence 579999999999998873 222 2356677766654
No 102
>cd03740 SOCS_SOCS6 SOCS (suppressors of cytokine signaling) box of SOCS6-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=34.79 E-value=72 Score=22.60 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHHh
Q 010572 3 KAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLT 42 (507)
Q Consensus 3 ~~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~ 42 (507)
.||||..||-.+|.+.... +.+.. -.||..+.+.+.+
T Consensus 2 ~v~sLqhLCR~~Ir~~~~~--~~i~~-LpLP~~Lk~yL~~ 38 (41)
T cd03740 2 QVRSLQYLCRFVIRQYTRI--DLIQK-LPLPNKMKGYLLE 38 (41)
T ss_pred CcccHHHHHHHHHHHHcch--hhccc-CCCCHHHHHHHHc
Confidence 4699999999999998631 12222 3567777777654
No 103
>cd03716 SOCS_ASB_like SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable number of repeats. SSB proteins contain a central SPRY domain and a C-terminal SOCS. Recently, it has been shown that all four SSB proteins interact with the MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), and that SSB-1, SSB-2, and SSB-4 interact with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain.
Probab=33.83 E-value=93 Score=21.93 Aligned_cols=36 Identities=36% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCc-c--cCCChhhHHHHH
Q 010572 3 KAPSLISLAALAVKRELLLGDDVIPY-V--YELPADLFDILL 41 (507)
Q Consensus 3 ~~p~l~~~c~~~~~~~~~~~~~~~p~-~--~~l~~~~~~~~~ 41 (507)
.+|+|.++|--+|-+.+-.. .+. | -.||..+++.++
T Consensus 2 ~P~sLq~LCR~~Ir~~lg~~---~~~~i~~LplP~~Lk~yLl 40 (42)
T cd03716 2 TPRSLQHLCRLAIRRCLGRR---RLELIKKLPLPPRLKDYLL 40 (42)
T ss_pred CCCCHHHHHHHHHHHHhCcc---ccccCccCCCCHHHHHHHc
Confidence 46999999999999998522 111 3 256676666553
No 104
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=32.79 E-value=27 Score=22.38 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=6.8
Q ss_pred CCCEEEccCCCCC
Q 010572 290 SLCSLKLRHCHLD 302 (507)
Q Consensus 290 sL~~L~LS~N~L~ 302 (507)
+|+.|+.++|+|.
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555553
No 105
>PF11879 DUF3399: Domain of unknown function (DUF3399); InterPro: IPR024587 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The Shal potassium channel was found in Drosophila melanogaster (Fruit fly). Several vertebrate potassium channels with similar amino acid sequences were subsequently found and, together with the D. melanogaster Shal channel, now constitute the Kv4 family. These channels are the primary subunits contributing to transient, voltage-dependent potassium currents in the nervous system (A currents) and the heart (transient outward current), and are inhibited by free fatty acids []. This family can be further divided into 3 subfamilies, designated Kv4.1(KCND1), Kv4.2(KCND2) and Kv4.3(KCND3). This uncharacterised C-terminal domain is associated with the Shal (Kv4) potassium channel.
Probab=32.62 E-value=19 Score=30.90 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.6
Q ss_pred HHHhhhhhhhhhhhhhhhh
Q 010572 114 AHVQGCLDEAAELVVLPSF 132 (507)
Q Consensus 114 ~hl~~cl~E~~e~~~~~~~ 132 (507)
.||-+||+.|.+.|||-.-
T Consensus 36 hHLLhCLEKTT~hEFvdeq 54 (104)
T PF11879_consen 36 HHLLHCLEKTTNHEFVDEQ 54 (104)
T ss_pred HHHHHHHHHccCcchhHHH
Confidence 6999999999999998543
No 106
>cd03745 SOCS_WSB2_SWIP2 SOCS (suppressors of cytokine signaling) box of WSB2/SWiP2-like proteins. This family consists of WSB-2 (SOCS-box-containing WD-40 protein) and SWiP-2 (SOCS box and WD-repeats in Protein). No functional information is available for WSB2 or SWiP-2, but limited information is available for the isoforms WSB-1 and SWiP-1. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=28.74 E-value=1e+02 Score=21.66 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHH
Q 010572 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDIL 40 (507)
Q Consensus 4 ~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~ 40 (507)
+|||..||=..|-++...+ ...-..||..+.+.+
T Consensus 3 v~SLQHLCR~~I~~~~~~~---~~~~LPLP~~Lk~yL 36 (39)
T cd03745 3 LPSLRHLCRKALRHFLTTY---QVLALPIPKKMKEFL 36 (39)
T ss_pred cccHHHHHHHHHHHhcccc---ccccCCCcHHHHHHH
Confidence 5999999999999997421 111235667776654
No 107
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=27.79 E-value=47 Score=23.52 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=16.6
Q ss_pred ccCCChhhHHHHHhcCCchhhh
Q 010572 29 VYELPADLFDILLTCLPPLALQ 50 (507)
Q Consensus 29 ~~~l~~~~~~~~~~~l~~~~~~ 50 (507)
+..||+|.+.+|++.||+.-+-
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~ 22 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLL 22 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHH
Confidence 3579999999999999988444
No 108
>cd03746 SOCS_WSB1_SWIP1 SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh). The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=26.46 E-value=1.3e+02 Score=21.17 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=24.6
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHH
Q 010572 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDILL 41 (507)
Q Consensus 4 ~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~ 41 (507)
||+|..||=.+|-+++.. +.++. -.||+.+++.+.
T Consensus 3 v~sLQhLCR~~Ir~~~~~--~~i~~-LpLP~~Lk~YL~ 37 (40)
T cd03746 3 VASLQHLCRMAIRRVMPT--QQVKE-LPIPSKLLEFLT 37 (40)
T ss_pred CcCHHHHHHHHHHHHccc--ccccc-CCCCHHHHHHHh
Confidence 799999999999998852 12221 356777777654
No 109
>cd03733 SOCS_WSB_SWIP SOCS (suppressors of cytokine signaling) box of WSB/SWiP-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2), and SWiP-1 (SOCS box and WD-repeats in Protein), a WD40-containing protein that is expressed in embryonic structures of chickens and regulated by Sonic Hedgehog (Shh), as well as, their isoforms WSB-2 and SWiP-2. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=24.74 E-value=1.4e+02 Score=20.84 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHH
Q 010572 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDIL 40 (507)
Q Consensus 4 ~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~ 40 (507)
||||..||=.+|-+++.. +.++. -.||+.+++.+
T Consensus 3 v~sLqhLCR~~Ir~~~~~--~~i~~-LpLP~~Lk~YL 36 (39)
T cd03733 3 VSSLQHLCRMALRRVMTT--QQVLA-LPIPKKMKEFL 36 (39)
T ss_pred CCCHHHHHHHHHHHHccc--ccccc-CCCCHHHHHHH
Confidence 599999999999999852 11111 25666666554
No 110
>cd03718 SOCS_SSB1_4 SOCS (suppressors of cytokine signaling) box of SSB1 and SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 and SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF) and also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=24.33 E-value=1.6e+02 Score=20.82 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHHHhccCCCCCCccc--CCChhhHHHH
Q 010572 3 KAPSLISLAALAVKRELLLGDDVIPYVY--ELPADLFDIL 40 (507)
Q Consensus 3 ~~p~l~~~c~~~~~~~~~~~~~~~p~~~--~l~~~~~~~~ 40 (507)
++++|.++|-.+|-+.+-.. ....|. .||+-+++.+
T Consensus 2 ~P~sLq~LCR~~Ir~~lg~~--~~~~I~~LpLP~~Lk~yL 39 (42)
T cd03718 2 EPLPLMDLCRRRVRVALGRD--RLEEIEQLPLPPSLKNYL 39 (42)
T ss_pred CCCCHHHHHHHHHHHHhCcc--cccccccCCCCHHHHHHH
Confidence 45899999999999999522 112233 3556666554
No 111
>cd03722 SOCS_ASB3 SOCS (suppressors of cytokine signaling) box of ASB3-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ABS3 has been shown to be negative regulator of TNF-R2-mediated cellular responses to TNF-alpha by direct targeting of tumor necrosis factor receptor II (TNF-R2) for ubiquitination and proteasome-mediated degradation. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=22.12 E-value=1.8e+02 Score=21.70 Aligned_cols=41 Identities=29% Similarity=0.334 Sum_probs=27.0
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCCc-c--cCCChhhHHHHHh
Q 010572 2 VKAPSLISLAALAVKRELLLGDDVIPY-V--YELPADLFDILLT 42 (507)
Q Consensus 2 ~~~p~l~~~c~~~~~~~~~~~~~~~p~-~--~~l~~~~~~~~~~ 42 (507)
+.+|+|..||=-+|-+.+....-..|. + -+||+-+++.+.-
T Consensus 1 ~~~~sLqhLCRl~IR~~lg~~~l~~~~~i~~LpLP~~Lk~YL~y 44 (51)
T cd03722 1 ASVPSLTHLCRLEIRSSLKSERLRSDSFICQLPLPRSLQDYLLY 44 (51)
T ss_pred CCCccHHHHHHHHHHHHcchhhcccccccccCCCCHHHHHHHhh
Confidence 357999999999999987421101122 3 3667777777654
No 112
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=21.02 E-value=47 Score=23.34 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=17.0
Q ss_pred ccCCChhhHHHHHhcCCchhhh
Q 010572 29 VYELPADLFDILLTCLPPLALQ 50 (507)
Q Consensus 29 ~~~l~~~~~~~~~~~l~~~~~~ 50 (507)
+.+||.+.+..|+.+||+..+-
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~ 24 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLL 24 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHH
Confidence 5689999999999999998544
Done!