Query 010572
Match_columns 507
No_of_seqs 286 out of 1475
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:41:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 99.9 1.5E-24 5E-29 228.6 21.9 274 197-485 142-423 (461)
2 1z7x_W Ribonuclease inhibitor; 99.9 3.4E-24 1.2E-28 225.8 23.8 280 198-491 86-401 (461)
3 2ca6_A RAN GTPase-activating p 99.9 9.8E-24 3.3E-28 218.6 23.9 277 195-486 30-331 (386)
4 3goz_A Leucine-rich repeat-con 99.9 1.5E-24 5.1E-29 223.4 14.5 266 192-470 16-296 (362)
5 3goz_A Leucine-rich repeat-con 99.9 4.8E-24 1.6E-28 219.6 17.9 270 175-455 23-310 (362)
6 2ca6_A RAN GTPase-activating p 99.9 5.2E-23 1.8E-27 213.1 20.3 268 210-490 18-305 (386)
7 3un9_A NLR family member X1; l 99.9 3E-23 1E-27 215.7 16.2 223 225-488 72-298 (372)
8 3un9_A NLR family member X1; l 99.8 6.8E-21 2.3E-25 197.9 14.0 171 281-487 92-266 (372)
9 1io0_A Tropomodulin; LRR prote 99.8 2.3E-20 7.9E-25 175.0 14.3 148 277-456 24-176 (185)
10 1pgv_A TMD-1, tropomodulin TMD 99.8 1.7E-19 6E-24 170.9 13.0 135 278-469 30-168 (197)
11 1io0_A Tropomodulin; LRR prote 99.8 8.5E-19 2.9E-23 164.4 14.9 148 304-486 23-175 (185)
12 1pgv_A TMD-1, tropomodulin TMD 99.8 2E-18 7E-23 163.5 12.7 129 363-492 29-161 (197)
13 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-20 4.3E-25 190.5 -5.0 180 118-334 2-190 (313)
14 3rgz_A Protein brassinosteroid 99.7 1.1E-19 3.7E-24 205.2 -3.3 297 124-470 12-355 (768)
15 4eco_A Uncharacterized protein 99.6 4.4E-17 1.5E-21 180.2 3.3 82 123-208 29-116 (636)
16 4ecn_A Leucine-rich repeat pro 99.6 1.1E-16 3.8E-21 182.9 5.9 312 123-470 268-709 (876)
17 2ast_B S-phase kinase-associat 99.6 2.2E-15 7.4E-20 152.0 11.6 226 175-470 71-305 (336)
18 3v47_A TOLL-like receptor 5B a 99.6 1.1E-15 3.9E-20 160.4 8.4 181 285-487 208-424 (455)
19 3ogk_B Coronatine-insensitive 99.6 1.2E-14 4E-19 157.7 13.8 222 221-482 289-535 (592)
20 2p1m_B Transport inhibitor res 99.6 9.4E-14 3.2E-18 150.5 19.7 97 373-482 432-528 (594)
21 2z80_A TOLL-like receptor 2, v 99.5 4.6E-15 1.6E-19 151.4 6.0 276 175-489 53-332 (353)
22 2ast_B S-phase kinase-associat 99.5 6.7E-14 2.3E-18 141.0 14.1 207 174-444 93-308 (336)
23 2z66_A Variable lymphocyte rec 99.5 1.4E-15 4.7E-20 151.9 0.1 230 197-471 28-261 (306)
24 3ogk_B Coronatine-insensitive 99.5 2.3E-13 7.8E-18 147.5 17.4 245 196-466 111-411 (592)
25 3v47_A TOLL-like receptor 5B a 99.5 4.3E-15 1.5E-19 156.0 2.7 192 174-396 30-235 (455)
26 1ogq_A PGIP-2, polygalacturona 99.5 6.3E-16 2.1E-20 155.9 -4.6 228 197-470 50-280 (313)
27 3rgz_A Protein brassinosteroid 99.5 2.3E-15 7.7E-20 169.9 -0.6 85 373-470 632-716 (768)
28 2id5_A Lingo-1, leucine rich r 99.5 2.5E-14 8.5E-19 151.6 5.9 227 196-470 79-332 (477)
29 3o6n_A APL1; leucine-rich repe 99.5 1.7E-14 5.8E-19 149.1 4.0 112 196-332 68-179 (390)
30 4fmz_A Internalin; leucine ric 99.5 9.4E-13 3.2E-17 133.3 16.7 234 175-470 89-323 (347)
31 1xku_A Decorin; proteoglycan, 99.5 4.6E-14 1.6E-18 142.5 6.9 228 196-470 75-305 (330)
32 2p1m_B Transport inhibitor res 99.4 2.6E-12 8.8E-17 139.1 19.9 245 196-469 288-542 (594)
33 4fmz_A Internalin; leucine ric 99.4 2E-12 6.8E-17 130.9 17.7 148 285-470 151-299 (347)
34 1ozn_A Reticulon 4 receptor; N 99.4 1.2E-13 4.1E-18 136.6 7.9 218 197-485 32-252 (285)
35 4fcg_A Uncharacterized protein 99.4 3.4E-15 1.2E-19 151.7 -4.1 274 124-470 27-313 (328)
36 2z80_A TOLL-like receptor 2, v 99.4 3.8E-14 1.3E-18 144.6 3.6 235 197-470 52-289 (353)
37 1xku_A Decorin; proteoglycan, 99.4 1.1E-13 3.6E-18 139.8 6.5 224 197-470 52-275 (330)
38 3t6q_A CD180 antigen; protein- 99.4 9.8E-15 3.3E-19 159.1 -1.7 126 346-485 445-574 (606)
39 3o53_A Protein LRIM1, AGAP0063 99.4 3.9E-14 1.3E-18 142.8 2.7 213 197-470 34-249 (317)
40 2z81_A CD282 antigen, TOLL-lik 99.4 8.2E-13 2.8E-17 142.0 12.8 135 174-332 26-162 (549)
41 4glp_A Monocyte differentiatio 99.4 1.7E-13 5.9E-18 137.5 6.5 240 195-470 62-306 (310)
42 3oja_A Leucine-rich immune mol 99.4 4.5E-14 1.5E-18 151.3 1.7 148 289-470 99-249 (487)
43 3vq2_A TLR4, TOLL-like recepto 99.4 4.6E-14 1.6E-18 153.8 1.5 207 223-471 348-558 (606)
44 2id5_A Lingo-1, leucine rich r 99.4 4E-14 1.4E-18 150.1 -0.2 251 174-470 32-308 (477)
45 1wwl_A Monocyte differentiatio 99.4 1.1E-13 3.8E-18 139.1 2.8 233 197-470 43-286 (312)
46 3t6q_A CD180 antigen; protein- 99.4 2.3E-13 8E-18 148.2 5.6 264 175-480 279-546 (606)
47 3zyj_A Leucine-rich repeat-con 99.4 2.1E-13 7.1E-18 143.6 5.0 227 197-470 64-291 (440)
48 3zyi_A Leucine-rich repeat-con 99.4 1.3E-13 4.3E-18 145.7 2.9 228 197-471 75-303 (452)
49 3o6n_A APL1; leucine-rich repe 99.4 3.2E-13 1.1E-17 139.5 5.8 229 194-471 42-308 (390)
50 2z7x_B TOLL-like receptor 1, v 99.4 1.1E-12 3.6E-17 140.5 10.0 55 428-487 443-497 (520)
51 4glp_A Monocyte differentiatio 99.4 5.6E-13 1.9E-17 133.7 7.3 216 196-445 90-310 (310)
52 1wwl_A Monocyte differentiatio 99.4 1.7E-12 5.8E-17 130.4 10.8 214 195-470 93-308 (312)
53 1ozn_A Reticulon 4 receptor; N 99.4 2.6E-13 9E-18 134.1 4.4 217 174-454 32-251 (285)
54 1ziw_A TOLL-like receptor 3; i 99.4 1.3E-13 4.5E-18 152.4 2.4 141 285-442 141-285 (680)
55 3oja_B Anopheles plasmodium-re 99.4 2E-13 6.7E-18 149.6 3.5 112 196-332 74-185 (597)
56 3oja_B Anopheles plasmodium-re 99.3 2.4E-13 8.1E-18 148.9 4.0 249 175-470 76-357 (597)
57 2z7x_B TOLL-like receptor 1, v 99.3 1.4E-12 4.6E-17 139.6 9.6 236 197-470 190-456 (520)
58 2ft3_A Biglycan; proteoglycan, 99.3 2.1E-13 7.1E-18 137.9 2.8 89 373-470 217-306 (332)
59 2ra8_A Uncharacterized protein 99.3 2.2E-12 7.7E-17 133.3 10.5 208 225-453 107-331 (362)
60 2ra8_A Uncharacterized protein 99.3 9.7E-13 3.3E-17 136.1 7.6 188 280-484 130-331 (362)
61 2z62_A TOLL-like receptor 4, v 99.3 5.1E-13 1.7E-17 131.4 5.2 102 373-485 149-251 (276)
62 3o53_A Protein LRIM1, AGAP0063 99.3 1.5E-12 5E-17 131.2 8.3 204 212-470 21-226 (317)
63 2ft3_A Biglycan; proteoglycan, 99.3 3.9E-13 1.3E-17 135.9 3.7 259 175-469 55-331 (332)
64 3zyj_A Leucine-rich repeat-con 99.3 4.6E-13 1.6E-17 140.9 4.2 202 225-470 64-267 (440)
65 3zyi_A Leucine-rich repeat-con 99.3 5.6E-13 1.9E-17 140.7 4.6 201 225-470 75-278 (452)
66 1o6v_A Internalin A; bacterial 99.3 4.3E-12 1.5E-16 134.4 11.2 79 373-470 287-365 (466)
67 4eco_A Uncharacterized protein 99.3 1.8E-13 6E-18 151.3 0.1 246 195-470 247-525 (636)
68 2z81_A CD282 antigen, TOLL-lik 99.3 1E-11 3.4E-16 133.5 13.6 95 373-486 431-525 (549)
69 1o6v_A Internalin A; bacterial 99.3 1.5E-11 5E-16 130.3 14.6 148 285-470 239-387 (466)
70 1h6u_A Internalin H; cell adhe 99.3 7.2E-12 2.5E-16 125.9 11.1 190 196-470 40-229 (308)
71 4ecn_A Leucine-rich repeat pro 99.3 1.3E-12 4.4E-17 149.4 5.3 240 195-470 489-740 (876)
72 4fcg_A Uncharacterized protein 99.3 3.2E-13 1.1E-17 137.1 0.2 164 285-470 123-289 (328)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.1E-11 3.7E-16 134.4 11.9 177 286-490 350-529 (562)
74 1ziw_A TOLL-like receptor 3; i 99.3 3.3E-12 1.1E-16 141.1 8.0 257 174-470 25-284 (680)
75 3oja_A Leucine-rich immune mol 99.3 3.4E-12 1.2E-16 136.7 6.2 193 223-470 32-226 (487)
76 1p9a_G Platelet glycoprotein I 99.2 8E-12 2.7E-16 124.7 8.3 171 285-487 51-223 (290)
77 2o6q_A Variable lymphocyte rec 99.2 8.6E-12 2.9E-16 122.5 7.7 182 225-473 37-220 (270)
78 3j0a_A TOLL-like receptor 5; m 99.2 5.4E-13 1.8E-17 152.0 -1.1 85 373-470 290-374 (844)
79 2z66_A Variable lymphocyte rec 99.2 3.6E-13 1.2E-17 134.3 -2.4 206 225-470 28-235 (306)
80 3bz5_A Internalin-J, INLJ; leu 99.2 1.3E-11 4.4E-16 131.2 8.7 203 175-444 43-248 (457)
81 3j0a_A TOLL-like receptor 5; m 99.2 3.8E-13 1.3E-17 153.2 -4.0 260 172-470 22-326 (844)
82 3vq2_A TLR4, TOLL-like recepto 99.2 1.8E-12 6.1E-17 141.2 0.5 113 345-470 419-533 (606)
83 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 4.9E-12 1.7E-16 137.1 3.7 50 282-333 242-291 (562)
84 2z62_A TOLL-like receptor 4, v 99.2 2.9E-12 9.9E-17 126.0 0.5 149 285-455 96-252 (276)
85 1h6t_A Internalin B; cell adhe 99.2 1.3E-10 4.5E-15 115.8 12.1 167 225-470 46-212 (291)
86 1h6u_A Internalin H; cell adhe 99.2 2.3E-10 7.9E-15 114.9 13.6 165 225-470 41-207 (308)
87 3rfs_A Internalin B, repeat mo 99.1 7.7E-11 2.6E-15 115.9 9.5 85 373-470 133-217 (272)
88 3m19_A Variable lymphocyte rec 99.1 3.5E-11 1.2E-15 116.8 6.4 178 226-471 15-192 (251)
89 2z63_A TOLL-like receptor 4, v 99.1 3E-12 1E-16 137.9 -1.3 169 286-480 370-540 (570)
90 2o6q_A Variable lymphocyte rec 99.1 3.5E-11 1.2E-15 118.1 5.5 217 155-443 3-219 (270)
91 3bz5_A Internalin-J, INLJ; leu 99.1 1.7E-10 5.8E-15 122.6 10.7 180 175-416 65-248 (457)
92 3m19_A Variable lymphocyte rec 99.1 2.4E-10 8.1E-15 111.0 9.8 191 199-456 16-208 (251)
93 3g06_A SSPH2 (leucine-rich rep 99.1 6.3E-10 2.2E-14 122.8 14.2 89 373-485 221-309 (622)
94 3rfs_A Internalin B, repeat mo 99.1 1.4E-10 4.8E-15 114.0 8.1 193 196-470 40-234 (272)
95 4ezg_A Putative uncharacterize 99.1 2.3E-10 7.7E-15 107.1 8.8 131 285-470 62-193 (197)
96 4ezg_A Putative uncharacterize 99.1 1.6E-10 5.5E-15 108.1 7.5 129 287-470 42-171 (197)
97 1m9s_A Internalin B; cell inva 99.1 4.8E-10 1.6E-14 123.4 12.0 79 373-470 131-209 (605)
98 1xeu_A Internalin C; cellular 99.0 2.1E-10 7E-15 112.8 7.2 126 285-470 59-184 (263)
99 2z63_A TOLL-like receptor 4, v 99.0 2.6E-11 8.9E-16 130.5 -0.5 185 223-444 345-533 (570)
100 3cvr_A Invasion plasmid antige 99.0 1.4E-10 4.9E-15 126.7 3.6 95 373-485 160-255 (571)
101 1p9a_G Platelet glycoprotein I 99.0 5.4E-10 1.9E-14 111.3 7.3 190 197-456 31-223 (290)
102 1h6t_A Internalin B; cell adhe 99.0 1.7E-09 5.9E-14 107.7 9.9 79 373-470 112-190 (291)
103 1m9s_A Internalin B; cell inva 98.9 6.7E-10 2.3E-14 122.2 7.1 172 196-445 42-213 (605)
104 3g06_A SSPH2 (leucine-rich rep 98.9 5.3E-09 1.8E-13 115.4 12.7 213 174-470 61-273 (622)
105 3e6j_A Variable lymphocyte rec 98.9 1E-09 3.5E-14 105.3 6.0 39 289-332 40-78 (229)
106 1jl5_A Outer protein YOPM; leu 98.9 5.2E-09 1.8E-13 110.9 11.5 135 290-470 174-309 (454)
107 2xwt_C Thyrotropin receptor; s 98.9 1.9E-10 6.3E-15 110.6 -0.1 80 373-469 155-237 (239)
108 1jl5_A Outer protein YOPM; leu 98.9 8.3E-09 2.8E-13 109.4 11.8 98 197-331 131-228 (454)
109 1xeu_A Internalin C; cellular 98.9 5.3E-09 1.8E-13 102.6 9.3 149 224-445 40-188 (263)
110 2xot_A Amphoterin-induced prot 98.8 1E-09 3.5E-14 112.5 4.1 152 287-482 62-213 (361)
111 2o6s_A Variable lymphocyte rec 98.8 9E-10 3.1E-14 103.5 2.9 133 289-470 28-160 (208)
112 4g8a_A TOLL-like receptor 4; l 98.8 6.8E-10 2.3E-14 120.3 2.1 178 286-487 417-596 (635)
113 3cvr_A Invasion plasmid antige 98.8 1.5E-09 5E-14 118.7 4.3 192 175-451 60-252 (571)
114 3e6j_A Variable lymphocyte rec 98.8 5.4E-09 1.9E-13 100.3 7.4 169 290-490 20-191 (229)
115 4g8a_A TOLL-like receptor 4; l 98.8 3.9E-09 1.3E-13 114.3 6.2 185 198-444 53-239 (635)
116 2v9t_B SLIT homolog 2 protein 98.8 3.3E-09 1.1E-13 101.3 4.6 133 289-470 32-164 (220)
117 2v9t_B SLIT homolog 2 protein 98.7 3E-09 1E-13 101.5 3.4 146 257-454 32-178 (220)
118 2v70_A SLIT-2, SLIT homolog 2 98.7 6.3E-09 2.2E-13 99.3 5.4 134 289-470 32-165 (220)
119 2xwt_C Thyrotropin receptor; s 98.7 3.9E-09 1.3E-13 101.3 3.4 82 376-470 133-217 (239)
120 2je0_A Acidic leucine-rich nuc 98.7 2.4E-08 8.2E-13 88.6 7.9 133 288-466 16-148 (149)
121 2v70_A SLIT-2, SLIT homolog 2 98.7 5.3E-09 1.8E-13 99.8 3.8 166 227-454 13-179 (220)
122 2ell_A Acidic leucine-rich nuc 98.7 2.4E-08 8.2E-13 90.4 7.9 138 287-470 22-159 (168)
123 2je0_A Acidic leucine-rich nuc 98.7 1.2E-08 4.3E-13 90.5 5.8 130 257-438 17-149 (149)
124 1dce_A Protein (RAB geranylger 98.7 1.4E-09 4.8E-14 118.7 -0.6 60 373-442 486-546 (567)
125 3e4g_A ATP synthase subunit S, 98.7 2.3E-08 7.8E-13 92.8 7.1 109 373-492 61-171 (176)
126 2ell_A Acidic leucine-rich nuc 98.7 2.9E-09 9.8E-14 96.6 0.9 138 257-443 24-161 (168)
127 2xot_A Amphoterin-induced prot 98.7 7.9E-09 2.7E-13 105.9 3.7 164 225-444 39-204 (361)
128 2o6s_A Variable lymphocyte rec 98.6 2.1E-08 7.3E-13 94.0 5.4 128 291-470 9-136 (208)
129 4b8c_D Glucose-repressible alc 98.6 4.2E-08 1.4E-12 110.1 7.9 190 282-493 217-444 (727)
130 1a9n_A U2A', U2A'; complex (nu 98.6 6.5E-08 2.2E-12 88.5 7.6 137 286-470 16-152 (176)
131 1w8a_A SLIT protein; signaling 98.6 5.7E-08 2E-12 90.5 5.8 62 373-442 78-139 (192)
132 2o6r_A Variable lymphocyte rec 98.5 1.4E-07 4.8E-12 86.2 7.2 79 400-487 75-153 (177)
133 1dce_A Protein (RAB geranylger 98.5 3.4E-09 1.2E-13 115.7 -4.7 137 283-470 403-545 (567)
134 1ds9_A Outer arm dynein; leuci 98.5 3.3E-08 1.1E-12 92.3 2.3 137 283-470 42-184 (198)
135 3e4g_A ATP synthase subunit S, 98.5 2.3E-07 8E-12 86.0 7.2 67 375-445 87-156 (176)
136 1w8a_A SLIT protein; signaling 98.4 1.3E-07 4.4E-12 88.1 5.0 85 373-470 54-138 (192)
137 2wfh_A SLIT homolog 2 protein 98.4 2.3E-07 8E-12 86.6 5.1 38 289-332 31-68 (193)
138 2o6r_A Variable lymphocyte rec 98.4 3.2E-07 1.1E-11 83.7 5.6 124 289-456 28-153 (177)
139 1a9n_A U2A', U2A'; complex (nu 98.3 1.2E-06 4E-11 80.1 8.9 109 316-470 17-125 (176)
140 1ds9_A Outer arm dynein; leuci 98.3 4.5E-08 1.5E-12 91.4 -1.3 158 225-443 18-186 (198)
141 2wfh_A SLIT homolog 2 protein 98.3 6.3E-07 2.2E-11 83.6 6.3 126 292-470 13-138 (193)
142 4b8c_D Glucose-repressible alc 98.2 8.4E-07 2.9E-11 99.5 6.1 133 315-468 221-369 (727)
143 3g39_A Variable lymphocyte rec 98.1 8.6E-07 2.9E-11 80.9 3.3 105 373-490 30-134 (170)
144 2r9u_A Variable lymphocyte rec 98.1 1.3E-06 4.3E-11 80.2 3.9 105 373-490 33-137 (174)
145 3g39_A Variable lymphocyte rec 98.1 5.5E-06 1.9E-10 75.5 7.5 120 290-456 10-131 (170)
146 4ay9_X Follicle-stimulating ho 98.1 2.4E-07 8.1E-12 94.3 -2.5 181 197-415 30-216 (350)
147 4ay9_X Follicle-stimulating ho 98.1 4.2E-07 1.4E-11 92.5 -0.8 178 258-470 31-214 (350)
148 2r9u_A Variable lymphocyte rec 98.0 9.1E-06 3.1E-10 74.5 6.8 119 291-456 14-134 (174)
149 3sb4_A Hypothetical leucine ri 97.8 2.6E-05 8.9E-10 78.3 6.7 83 373-470 226-309 (329)
150 2ifg_A High affinity nerve gro 97.4 0.00013 4.4E-09 73.4 6.1 44 285-333 27-71 (347)
151 3rw6_A Nuclear RNA export fact 97.3 0.00016 5.6E-09 71.2 4.4 17 316-332 168-184 (267)
152 2ifg_A High affinity nerve gro 97.0 0.00053 1.8E-08 68.8 4.8 84 373-470 31-115 (347)
153 3rw6_A Nuclear RNA export fact 96.9 0.0026 8.7E-08 62.6 9.3 85 373-464 170-257 (267)
154 3sb4_A Hypothetical leucine ri 95.2 0.014 4.7E-07 58.2 4.6 77 373-464 250-327 (329)
155 4fdw_A Leucine rich hypothetic 94.4 0.044 1.5E-06 56.7 6.1 15 223-237 178-192 (401)
156 4fdw_A Leucine rich hypothetic 93.0 0.045 1.6E-06 56.6 3.1 86 373-470 271-357 (401)
157 4hfx_A Transcription elongatio 84.9 0.48 1.7E-05 39.0 2.6 58 32-111 13-71 (97)
158 2e31_A FBS1, F-box only protei 84.0 0.6 2.1E-05 46.3 3.4 71 27-118 49-125 (297)
159 3rfe_A Platelet glycoprotein I 78.8 0.99 3.4E-05 38.8 2.5 38 289-331 31-68 (130)
160 3rfe_A Platelet glycoprotein I 75.9 0.95 3.3E-05 38.9 1.6 12 430-441 56-67 (130)
161 2ovr_B FBW7, F-BOX/WD repeat p 53.8 13 0.00045 37.2 5.2 86 13-117 4-99 (445)
162 4gt6_A Cell surface protein; l 48.7 25 0.00084 35.2 6.3 80 373-470 311-390 (394)
163 1lm8_V VHL, VON hippel-lindau 43.5 18 0.00062 32.3 3.7 41 2-45 100-140 (160)
164 2jz3_A Suppressor of cytokine 36.0 51 0.0018 22.2 4.2 35 4-42 1-35 (40)
165 1fs1_A SKP2 F-BOX, cyclin A/CD 30.0 33 0.0011 23.8 2.6 24 27-50 7-30 (53)
166 3ukx_C Bimax2 peptide; arm rep 29.9 19 0.00064 21.7 1.0 11 72-82 5-15 (28)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1.5e-24 Score=228.62 Aligned_cols=274 Identities=18% Similarity=0.146 Sum_probs=169.7
Q ss_pred CCcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 197 SKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 197 ~~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
+.|++|+++++.. ..++..+...+. .+++|++|+|++|.+++.++..++..+.... +.++.|+++.+.+.+..
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~---~~L~~L~L~~n~l~~~~-- 215 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSP---CQLEALKLESCGVTSDN-- 215 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSC---CCCCEEECTTSCCBTTH--
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCC---CCceEEEccCCCCcHHH--
Confidence 3577777766643 334444444443 3467777777777777777777766655321 25677777666543211
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
...+..++..+++|++|+|++|.+++.|+..++.++.+..++|++|+|++|.|++... ..+..++..+++|++|
T Consensus 216 --~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 216 --CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC----GDLCRVLRAKESLKEL 289 (461)
T ss_dssp --HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH----HHHHHHHHHCTTCCEE
T ss_pred --HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH----HHHHHHHhhCCCcceE
Confidence 1235667778888888888888888888888887776667888888888888875211 1112245556666666
Q ss_pred ccccch---hHHHHHHhhhc---CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCC-C
Q 010572 356 RLLNLS---HIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPL-A 428 (507)
Q Consensus 356 ~ll~l~---~~~~~L~~~l~---~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~-n 428 (507)
.+.++. .+...++..+. ++|++|+|++|.+++.|+..++.++..+.+|++|+|++|.+++.++..+++++.. +
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 666654 34444544443 4666666666666666666666666666666666666666666666666665543 4
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 429 PELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 429 ~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
++|++|++++|.++++|+..+..++... .+|++|+|++|.+ +..++..+.+...
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~N~i--~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLAN-HSLRELDLSNNCL--GDAGILQLVESVR 423 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHC-CCCCEEECCSSSC--CHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhC-CCccEEECCCCCC--CHHHHHHHHHHhc
Confidence 4566666666666666666666666554 4566666666653 5555555544443
No 2
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=3.4e-24 Score=225.83 Aligned_cols=280 Identities=17% Similarity=0.190 Sum_probs=170.0
Q ss_pred CcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 198 KLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 198 ~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
.|++|+++++.. +.++..+...+ ..+++|++|+|++|.+++.++..++..+..+. +.++.|+++.+.+.+.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~---~~L~~L~L~~n~l~~~---- 157 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ---CRLEKLQLEYCSLSAA---- 157 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT---CCCCEEECTTSCCBGG----
T ss_pred ceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCC---CcceEEECCCCCCCHH----
Confidence 356666655532 23333333333 34456666666666666655555555544321 2355555554443221
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcc---------
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG--------- 347 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~--------- 347 (507)
....+..++..+++|++|+|++|.+++.++..++.++..+.++|++|+|++|.+++... ..+...+.
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC----RDLCGIVASKASLRELA 233 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH----HHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH----HHHHHHHHhCCCccEEe
Confidence 01224445555556666666666666555555555554444556666666665553110 00001122
Q ss_pred --------------------cCCCcCccccccch---hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCC-C
Q 010572 348 --------------------AGKSLQSLRLLNLS---HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKE-L 401 (507)
Q Consensus 348 --------------------~~~~L~~L~ll~l~---~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n-~ 401 (507)
.+++|++|.+.++. .++..++..+. ++|++|+|++|.+++.|...+++.+..+ .
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence 24445555555543 34444555554 6677777777777777777777766654 4
Q ss_pred CCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHH
Q 010572 402 KLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLS 481 (507)
Q Consensus 402 ~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~ 481 (507)
+|++|+|++|.+++.++..++..+..+++|++|++++|.+++.|+..++++++.+.++|++|+|++|.+ +++++..++
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i--~~~~~~~l~ 391 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV--SDSSCSSLA 391 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC--CHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC--ChhhHHHHH
Confidence 677777777777777777777777777889999999999999999999999987667899999999984 888888887
Q ss_pred HHHHcCCCeE
Q 010572 482 EFRHNGLPIL 491 (507)
Q Consensus 482 ~~~~~~~~i~ 491 (507)
+...+.+.+.
T Consensus 392 ~~l~~~~~L~ 401 (461)
T 1z7x_W 392 ATLLANHSLR 401 (461)
T ss_dssp HHHHHCCCCC
T ss_pred HHHHhCCCcc
Confidence 7766666653
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=9.8e-24 Score=218.58 Aligned_cols=277 Identities=16% Similarity=0.165 Sum_probs=204.4
Q ss_pred ccCCcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCC------hhHHHHHHHHhccCCcccccccceecccc
Q 010572 195 RESKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLS------PSFVEGICRSLCSKRKRIHKIENLSIDIS 267 (507)
Q Consensus 195 ~~~~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls------~~~~~~L~~~L~~~~~~~~~l~~L~l~~~ 267 (507)
....|++|+|+++.. ..+...+...+ ..+++|++|+|++|.++ +.++..++.++... ..++.|+++.+
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~----~~L~~L~Ls~n 104 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC----PKLHTVRLSDN 104 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC----TTCCEEECCSC
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC----CcccEEECCCC
Confidence 345788888887743 34444444444 45678888888887544 34666666666543 35778887776
Q ss_pred ccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCC---------CCccEEECcCCCCCC-ccccc
Q 010572 268 SFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEAS---------SSLSILDLSGNSIGG-WLSKY 337 (507)
Q Consensus 268 ~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~---------~~L~~LdLS~N~L~~-~l~~~ 337 (507)
.+.+.+ ...++..+..+++|++|+|++|.+++.++..++..+.. . ++|++|+|++|.|++ .+..
T Consensus 105 ~l~~~~----~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~- 178 (386)
T 2ca6_A 105 AFGPTA----QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE-LAVNKKAKNAPPLRSIICGRNRLENGSMKE- 178 (386)
T ss_dssp CCCTTT----HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHH-HHHHHHHHTCCCCCEEECCSSCCTGGGHHH-
T ss_pred cCCHHH----HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHH-HhhhhhcccCCCCcEEECCCCCCCcHHHHH-
Confidence 653321 12356677888888888888888888888777766532 3 688888888888873 2211
Q ss_pred ccCCchhhcccCCCcCccccccch---hHHHHHHh-hhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCC
Q 010572 338 DRSGPLFSLGAGKSLQSLRLLNLS---HIAASLGK-FFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKN 411 (507)
Q Consensus 338 ~~~~l~~~L~~~~~L~~L~ll~l~---~~~~~L~~-~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N 411 (507)
++.++..+++|++|.+.++. .++..+.. .+. ++|++|+|++|.|++.|+..++.++..+.+|++|+|++|
T Consensus 179 ----l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 179 ----WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp ----HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred ----HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 22356667778888777765 35555555 555 889999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhCCC--CCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHc
Q 010572 412 RGGVETAKFLSKLMPL--APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHN 486 (507)
Q Consensus 412 ~i~~~g~~~L~~~L~~--n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~ 486 (507)
.+++.|+..++..+.. +++|++|+|++|.|++.|+..+..++..+.++|+.|+|++|.+......+..+.+...+
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST 331 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhh
Confidence 9999999999998855 88999999999999999999999999655478999999999973222224555554444
No 4
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=1.5e-24 Score=223.40 Aligned_cols=266 Identities=20% Similarity=0.177 Sum_probs=214.0
Q ss_pred hhhccC-CcCeeecccccC-hhhHHHHHHHHhhCCC-CccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccc
Q 010572 192 QLLRES-KLQSLVLRWIRF-EEHVQALCKLLIQNSE-TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS 268 (507)
Q Consensus 192 ~ll~~~-~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~-~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~ 268 (507)
...... .|++|+++++.. +.+...++..+. +++ +|++|+|++|.+++.++..++..+... ...++.|+++.|.
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~---~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSLGFKNSDELVQILAAI---PANVTSLNLSGNF 91 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCGGGSCHHHHHHHHHTS---CTTCCEEECCSSC
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCCCHHHHHHHHHHHhcc---CCCccEEECcCCc
Confidence 334444 499999998854 445556666665 455 899999999999999999988887654 1368999998887
Q ss_pred cccCCCCcchHHHHHHHhCC-CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcc
Q 010572 269 FIENCPSSVVVELVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLG 347 (507)
Q Consensus 269 ~le~~~~~l~~~L~~~L~~~-~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~ 347 (507)
+.+. ....++.++..+ ++|++|+|++|.+++.++..++.++....++|++|+|++|.|++.... .+..++.
T Consensus 92 l~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~ 163 (362)
T 3goz_A 92 LSYK----SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD----ELIQILA 163 (362)
T ss_dssp GGGS----CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH----HHHHHHH
T ss_pred CChH----HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH----HHHHHHh
Confidence 6432 234577788888 899999999999999999999888765347999999999999953221 1223455
Q ss_pred cCC-CcCccccccch---hHHHHHHhhhc---CCCcEEEeccCCCCchhHHHHHHhhcC-CCCCCEEeccCCCCChHHHH
Q 010572 348 AGK-SLQSLRLLNLS---HIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTK-ELKLVNINISKNRGGVETAK 419 (507)
Q Consensus 348 ~~~-~L~~L~ll~l~---~~~~~L~~~l~---~~L~~L~Ls~n~l~~~G~~~L~~aL~~-n~~L~~LdLs~N~i~~~g~~ 419 (507)
... +|++|.+.++. .+...++..+. ++|++|+|++|.|++.|+..++.++.. +.+|++|+|++|.+++.|++
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 444 78888887775 45556666654 489999999999999999999999987 45899999999999999999
Q ss_pred HHHhhCCCCCCccEEEccCCC---CChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 420 FLSKLMPLAPELVEVNAGYNL---MPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 420 ~L~~~L~~n~~L~~L~Ls~N~---l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++.++..+++|++|+|++|. ++++++..+.+++... .+|+.|||++|.+
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l-~~L~~LdL~~N~l 296 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI-QKIILVDKNGKEI 296 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC-CEEEEECTTSCBC
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC-CceEEEecCCCcC
Confidence 999999999999999999998 8888999998888855 6799999999997
No 5
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=4.8e-24 Score=219.60 Aligned_cols=270 Identities=18% Similarity=0.133 Sum_probs=199.2
Q ss_pred eeEEEEeccCcchh----hh-hhhhccC-CcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHH
Q 010572 175 YARCLRLQNALCVE----ET-CQLLRES-KLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICR 247 (507)
Q Consensus 175 ~v~~L~L~~~l~~~----~~-~~ll~~~-~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~ 247 (507)
.++.|+|....-.. .+ ..+.... .|++|+++++.. +.+...++..+....++|++|+|++|.+++..+..++.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 48888887522111 11 1223344 789999988754 34455666665444478999999999999888888887
Q ss_pred HhccCCcccccccceeccccccccCCCCcchHHHHHHHhC-CCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECc
Q 010572 248 SLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSS-GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS 326 (507)
Q Consensus 248 ~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~-~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS 326 (507)
.+.... ..++.|+++.|.+.+.. ...+..++.. +++|++|+|++|.+++.|+..++.++....++|++|+|+
T Consensus 103 ~l~~~~---~~L~~L~Ls~N~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 103 TLAAIP---FTITVLDLGWNDFSSKS----SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175 (362)
T ss_dssp HHHTSC---TTCCEEECCSSCGGGSC----HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHhCC---CCccEEECcCCcCCcHH----HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec
Confidence 776531 35888888887764321 2346667777 468999999999999999988888886654589999999
Q ss_pred CCCCCCcccccccCCchhhcccC-CCcCccccccch---hHHHHHHhhhc---CCCcEEEeccCCCCchhHHHHHHhhcC
Q 010572 327 GNSIGGWLSKYDRSGPLFSLGAG-KSLQSLRLLNLS---HIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTK 399 (507)
Q Consensus 327 ~N~L~~~l~~~~~~~l~~~L~~~-~~L~~L~ll~l~---~~~~~L~~~l~---~~L~~L~Ls~n~l~~~G~~~L~~aL~~ 399 (507)
+|.|++... ..++.++..+ ++|++|.+.+|. .++..++.++. ++|++|+|++|.|++.|.+.++..+..
T Consensus 176 ~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 176 GNNLASKNC----AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp TSCGGGSCH----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred CCCCchhhH----HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 999885332 1223355556 478888887775 45556666654 589999999999999999888888888
Q ss_pred CCCCCEEeccCCC---CChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhc
Q 010572 400 ELKLVNINISKNR---GGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKV 455 (507)
Q Consensus 400 n~~L~~LdLs~N~---i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~ 455 (507)
..+|++|+|++|. ++..+...+.+.+..+++|+.||+++|.+++.+...++.+++.
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~~ 310 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE 310 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHHH
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHHH
Confidence 8889999999998 8888888888888888889999999999998887777777765
No 6
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=5.2e-23 Score=213.10 Aligned_cols=268 Identities=15% Similarity=0.102 Sum_probs=212.8
Q ss_pred hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchH---HHHHHHh
Q 010572 210 EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVV---ELVSFLS 286 (507)
Q Consensus 210 ~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~---~L~~~L~ 286 (507)
+.++..++..+. .+++|++|+|++|.+++.++..+...+... ..++.|+++.+.+.... ..++. .++.++.
T Consensus 18 ~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~----~~L~~L~Ls~~~~~~l~-~~~~~~~~~l~~~l~ 91 (386)
T 2ca6_A 18 TEDEKSVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASK----KDLEIAEFSDIFTGRVK-DEIPEALRLLLQALL 91 (386)
T ss_dssp SHHHHTTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTC----TTCCEEECCSCCTTSCG-GGSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhC----CCccEEeCcccccCccc-cchhHHHHHHHHHHh
Confidence 456666666664 458899999999999999999998887653 35888888765432111 12232 3567788
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccC---------CCcCcccc
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAG---------KSLQSLRL 357 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~---------~~L~~L~l 357 (507)
.+++|++|+|++|.+++.|+..+...+.. .++|++|+|++|.|++.... .+...+..+ ++|++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~----~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQAGA----KIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHHHHH----HHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHHHHH----HHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 99999999999999999999988887754 59999999999999843211 111133333 67888888
Q ss_pred ccch---hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHH-hhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCc
Q 010572 358 LNLS---HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQD-GVTKELKLVNINISKNRGGVETAKFLSKLMPLAPEL 431 (507)
Q Consensus 358 l~l~---~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~-aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L 431 (507)
.++. .+...++..+. .+|++|+|++|+|++.|+..++. ++....+|++|+|++|.+++.|+..+...+..+++|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 7775 45556666665 79999999999999999999888 888899999999999999999999999999999999
Q ss_pred cEEEccCCCCChhHHHHHHHHHhc-CCCCccEEEecCCCCCCCccHHHHHHHHH-HcCCCe
Q 010572 432 VEVNAGYNLMPLESLTIICSALKV-AKGHLQRLDLTGNNWELQPSHVSMLSEFR-HNGLPI 490 (507)
Q Consensus 432 ~~L~Ls~N~l~~~g~~~L~~aL~~-~~~~L~~LdL~~N~~~~~~~~~~~l~~~~-~~~~~i 490 (507)
++|+|++|.|++.|+..++.+++. +.++|+.|+|++|.+ +..++..+.+.. .+-+.+
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i--~~~g~~~l~~~l~~~l~~L 305 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI--ELDAVRTLKTVIDEKMPDL 305 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC--BHHHHHHHHHHHHHHCTTC
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC--CHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999975 236899999999995 777888776655 444555
No 7
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=215.70 Aligned_cols=223 Identities=21% Similarity=0.231 Sum_probs=176.9
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
.+|++|+|++|.+++..+..+...|.... ..++.|+++.|.+.+ .++.......++|++|+|++|.|++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~---~~L~~L~Ls~n~l~~-------~~~~~l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGR---HALDEVNLASCQLDP-------AGLRTLLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCS---SCEEEEECTTCCCCH-------HHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCC---CCceEEEecCCCCCH-------HHHHHHHHHHHhccHhhcCCCCCCHH
Confidence 56889999999999988888888877542 357888887766422 11112222334799999999999999
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEecc
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGA 382 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~ 382 (507)
|+..++.++..+.++|++|+|++|.|++ .++..++.++. ++|++|+|++
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~-----------------------------~~~~~l~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTA-----------------------------AGVAVLMEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHH-----------------------------HHHHHHHHHHHTCSSCCEEECTT
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCCh-----------------------------HHHHHHHHHHhcCCCcCEEeCCC
Confidence 9999999987777999999999999974 23445555554 7899999999
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccE
Q 010572 383 IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQR 462 (507)
Q Consensus 383 n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~ 462 (507)
|.|++.|+..|++++..+.+|++|+|++|.|++.|+..++.++..+++|++|+|++|.|++.|+..|+++...+.|.|+.
T Consensus 193 N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~ 272 (372)
T 3un9_A 193 TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARV 272 (372)
T ss_dssp SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEE
T ss_pred CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876654466999
Q ss_pred EE--ecCCCCCCCccHHHHHHHHHHcCC
Q 010572 463 LD--LTGNNWELQPSHVSMLSEFRHNGL 488 (507)
Q Consensus 463 Ld--L~~N~~~~~~~~~~~l~~~~~~~~ 488 (507)
+. +.+|.+ +.+....+.+++++-.
T Consensus 273 l~~ll~~~~~--~~~~~~~l~~l~~~~~ 298 (372)
T 3un9_A 273 VVSLTEGTAV--SEYWSVILSEVQRNLN 298 (372)
T ss_dssp ECCCC----C--HHHHHHHHHHHHHHST
T ss_pred hHhhhcCCcc--CHHHHHHHHHHHHHhh
Confidence 98 888874 7777778888887743
No 8
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.84 E-value=6.8e-21 Score=197.91 Aligned_cols=171 Identities=20% Similarity=0.267 Sum_probs=136.4
Q ss_pred HHHHHhCC-CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcccccc
Q 010572 281 LVSFLSSG-RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN 359 (507)
Q Consensus 281 L~~~L~~~-~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~ 359 (507)
++.+|... ++|++|+|++|.+++.|+..++.++ .+|++|+|++|.|++
T Consensus 92 l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L----~~L~~L~Ls~n~l~~--------------------------- 140 (372)
T 3un9_A 92 VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF----LRARKLGLQLNSLGP--------------------------- 140 (372)
T ss_dssp HHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH----HTEEEEECCSSCCCH---------------------------
T ss_pred HHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH----HhccHhhcCCCCCCH---------------------------
Confidence 34444433 4566666666666665555555444 245566666665553
Q ss_pred chhHHHHHHhhhc---CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEc
Q 010572 360 LSHIAASLGKFFG---TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA 436 (507)
Q Consensus 360 l~~~~~~L~~~l~---~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~L 436 (507)
.++..++.++. ++|++|+|++|.|++.|+..++.++..+.+|++|+|++|.|++.|+..|+.++..+++|++|+|
T Consensus 141 --~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 141 --EACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp --HHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred --HHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 35566666663 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 437 GYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 437 s~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
++|.|++.|+..++++++.+ ++|++|||++|.+ ++.++..++++.+.+
T Consensus 219 s~N~i~~~g~~~l~~~L~~~-~~L~~L~Ls~N~i--~~~g~~~L~~~~~~~ 266 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREH-PSLELLHLYFNEL--SSEGRQVLRDLGGAA 266 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHC-SSCCEEECTTSSC--CHHHHHHHHHCC---
T ss_pred CCCCCCHHHHHHHHHHHHhC-CCCCEEeccCCCC--CHHHHHHHHHHhcCC
Confidence 99999999999999999876 5799999999994 999999999887765
No 9
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.83 E-value=2.3e-20 Score=175.03 Aligned_cols=148 Identities=12% Similarity=0.169 Sum_probs=113.6
Q ss_pred chHHHHHHHhCCCCCCEEEccCC-CCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N-~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
+...++.++..+++|++|+|++| .++++|+..++.++.. .++|++|+|++|.|++
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~----------------------- 79 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSND----------------------- 79 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCH-----------------------
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCCh-----------------------
Confidence 34567888999999999999999 9999999999998865 4788888888888774
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEec--cCCCCChHHHHHHHhhCCCCCCc
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI--SKNRGGVETAKFLSKLMPLAPEL 431 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdL--s~N~i~~~g~~~L~~~L~~n~~L 431 (507)
.++.+++.++. ++|++|+|++|.|++.|+..|+++|..+.+|++|+| ++|.|+++|+..|++++..+++|
T Consensus 80 ------~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L 153 (185)
T 1io0_A 80 ------PVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTL 153 (185)
T ss_dssp ------HHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSC
T ss_pred ------HHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCc
Confidence 24445555554 667777777777777777777777777777777777 66777777777777777777777
Q ss_pred cEEEccCCCCChhHHHHHHHHHhcC
Q 010572 432 VEVNAGYNLMPLESLTIICSALKVA 456 (507)
Q Consensus 432 ~~L~Ls~N~l~~~g~~~L~~aL~~~ 456 (507)
++|+|++|.++++|+ ++++++.|
T Consensus 154 ~~L~L~~n~i~~~~~--i~~~L~~N 176 (185)
T 1io0_A 154 LKFGYHFTQQGPRLR--ASNAMMNN 176 (185)
T ss_dssp CEEECCCSSHHHHHH--HHHHHHHH
T ss_pred CEEeccCCCCChHHH--HHHHHHhh
Confidence 777777777777764 66666654
No 10
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.80 E-value=1.7e-19 Score=170.86 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=85.3
Q ss_pred hHHHHHHHhCCCCCCEEEccCC-CCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 278 VVELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 278 ~~~L~~~L~~~~sL~~L~LS~N-~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
...+..++..+++|++|+|++| .|+++|++.+|++|..+ +.|++|+|++|.|+
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~ig------------------------- 83 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAIS------------------------- 83 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCB-------------------------
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCC-------------------------
Confidence 3457888899999999999995 99999999999998644 66666666555554
Q ss_pred cccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEc
Q 010572 357 LLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA 436 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~L 436 (507)
+.|+++|+++|..|.+|++|+|+.|.|+++|+..|+++|+.|++|++|+|
T Consensus 84 ------------------------------d~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L 133 (197)
T 1pgv_A 84 ------------------------------DSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKA 133 (197)
T ss_dssp ------------------------------HHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEEC
T ss_pred ------------------------------hHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEEC
Confidence 44445555555555555555555555555555555555555555555555
Q ss_pred cCC---CCChhHHHHHHHHHhcCCCCccEEEecCCC
Q 010572 437 GYN---LMPLESLTIICSALKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 437 s~N---~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~ 469 (507)
++| .+|++|++.|+++|+.| ++|++|+|+.|.
T Consensus 134 ~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~ 168 (197)
T 1pgv_A 134 DNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFAS 168 (197)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCC
T ss_pred CCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCC
Confidence 432 44555555555555554 345555554443
No 11
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.79 E-value=8.5e-19 Score=164.36 Aligned_cols=148 Identities=14% Similarity=0.030 Sum_probs=128.1
Q ss_pred hHHHHHHHHhccCCCCccEEECcCC-CCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEe
Q 010572 304 DFGRMVFSSLLEASSSLSILDLSGN-SIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNI 380 (507)
Q Consensus 304 ~g~~~L~~~L~~~~~~L~~LdLS~N-~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~L 380 (507)
...+.++..+. ..++|++|+|++| .|++ .++..++.++. ++|++|+|
T Consensus 23 ~~~~~l~~~l~-~~~~L~~L~L~~n~~i~~-----------------------------~g~~~l~~~L~~~~~L~~L~L 72 (185)
T 1io0_A 23 DVEETLKRIQN-NDPDLEEVNLNNIMNIPV-----------------------------PTLKACAEALKTNTYVKKFSI 72 (185)
T ss_dssp CHHHHHHHHHT-TCTTCCEEECTTCTTCCH-----------------------------HHHHHHHHHHTTCCSCCEEEC
T ss_pred HHHHHHHHHHh-cCCCCCEEEecCCCCCCH-----------------------------HHHHHHHHHHHhCCCcCEEEC
Confidence 34455666664 4599999999999 9985 35566777766 88999999
Q ss_pred ccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEc--cCCCCChhHHHHHHHHHhcCCC
Q 010572 381 GAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA--GYNLMPLESLTIICSALKVAKG 458 (507)
Q Consensus 381 s~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~L--s~N~l~~~g~~~L~~aL~~~~~ 458 (507)
++|.|++.|+..|+++|..+.+|++|+|++|.|+++|+..|++++..+++|++|+| ++|.|+++|+..|+++++.+ .
T Consensus 73 s~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n-~ 151 (185)
T 1io0_A 73 VGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN-T 151 (185)
T ss_dssp TTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC-S
T ss_pred cCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC-C
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999999999987 6
Q ss_pred CccEEEecCCCCCCCccHHHHHHHHHHc
Q 010572 459 HLQRLDLTGNNWELQPSHVSMLSEFRHN 486 (507)
Q Consensus 459 ~L~~LdL~~N~~~~~~~~~~~l~~~~~~ 486 (507)
+|++|+|++|.+ +++++ +++..+.
T Consensus 152 ~L~~L~L~~n~i--~~~~~--i~~~L~~ 175 (185)
T 1io0_A 152 TLLKFGYHFTQQ--GPRLR--ASNAMMN 175 (185)
T ss_dssp SCCEEECCCSSH--HHHHH--HHHHHHH
T ss_pred CcCEEeccCCCC--ChHHH--HHHHHHh
Confidence 799999999985 66553 5554443
No 12
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.77 E-value=2e-18 Score=163.51 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=116.6
Q ss_pred HHHHHHhhhc--CCCcEEEeccC-CCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCC
Q 010572 363 IAASLGKFFG--TSVQVLNIGAI-GLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYN 439 (507)
Q Consensus 363 ~~~~L~~~l~--~~L~~L~Ls~n-~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N 439 (507)
..+.+...+. ++|++|+|++| .|+++|++.|+++|..|.+|++|+|++|.|+++|+..|+++|+.|++|++|+|+.|
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3345556555 88999999986 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcCCCCccEEEecCCCC-CCCccHHHHHHHHHHcCCCeEE
Q 010572 440 LMPLESLTIICSALKVAKGHLQRLDLTGNNW-ELQPSHVSMLSEFRHNGLPILI 492 (507)
Q Consensus 440 ~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~-~~~~~~~~~l~~~~~~~~~i~~ 492 (507)
.|+++|+..|+++|+.|. +|+.|+|++|.. .+++.++..++++.+.++.+.-
T Consensus 109 ~Ig~~Ga~ala~aL~~N~-tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~ 161 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQ-SIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLR 161 (197)
T ss_dssp BCCHHHHHHHHHHTTTTC-CCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCE
T ss_pred cCCHHHHHHHHHHHhhCC-ceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCe
Confidence 999999999999999985 599999987644 4799999999999999988853
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=1.3e-20 Score=190.45 Aligned_cols=180 Identities=14% Similarity=0.065 Sum_probs=112.9
Q ss_pred hhhhhhhhhhhhhhhccCCcccccchhhhhccchhhccccc--ccccccccceecccC--ceeEEEEeccCcchh--hhh
Q 010572 118 GCLDEAAELVVLPSFRGLISDINISDTILNYIGYEQQMNHL--ACDYSKLSYHCQQFG--HYARCLRLQNALCVE--ETC 191 (507)
Q Consensus 118 ~cl~E~~e~~~~~~~~~~l~di~~~~~~l~~~~~~~~~~c~--~~~l~~l~~~c~~~~--~~v~~L~L~~~l~~~--~~~ 191 (507)
.|.. +|++++.+|+.++.+ |. .+..|.. ..+||. | -+|.|...+ ++|+.|+|....-.+ .+.
T Consensus 2 ~c~~--~~~~aL~~~k~~~~~---~~-~l~~W~~-~~~~C~~~w-----~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~ 69 (313)
T 1ogq_A 2 LCNP--QDKQALLQIKKDLGN---PT-TLSSWLP-TTDCCNRTW-----LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP 69 (313)
T ss_dssp CSCH--HHHHHHHHHHHHTTC---CG-GGTTCCT-TSCTTTTCS-----TTEEECCSSSCCCEEEEEEECCCCSSCEECC
T ss_pred CCCH--HHHHHHHHHHHhcCC---cc-cccCCCC-CCCCCcCCC-----cceEeCCCCCCceEEEEECCCCCccCCcccC
Confidence 3666 799999999999976 65 6888953 457888 9 388998654 689999998633222 232
Q ss_pred -hhhccCCcCeeeccc-ccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceecccccc
Q 010572 192 -QLLRESKLQSLVLRW-IRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSF 269 (507)
Q Consensus 192 -~ll~~~~L~~L~Ls~-~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~ 269 (507)
.+....+|++|++++ +..... .+.-+.++++|++|+|++|.+++..+..+ .. ...++.|+++.+.+
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~----l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGAIPDFL----SQ----IKTLVTLDFSYNAL 137 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEECCGGG----GG----CTTCCEEECCSSEE
T ss_pred hhHhCCCCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCCcCCHHH----hC----CCCCCEEeCCCCcc
Confidence 345567889999883 432211 12223567889999999988865433322 10 12466666666554
Q ss_pred ccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCC-CccEEECcCCCCCCcc
Q 010572 270 IENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASS-SLSILDLSGNSIGGWL 334 (507)
Q Consensus 270 le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~-~L~~LdLS~N~L~~~l 334 (507)
... +...+..+++|++|+|++|.+.+.....+ .... .|++|+|++|.|++.+
T Consensus 138 ~~~--------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 138 SGT--------LPPSISSLPNLVGITFDGNRISGAIPDSY-----GSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp ESC--------CCGGGGGCTTCCEEECCSSCCEEECCGGG-----GCCCTTCCEEECCSSEEEEEC
T ss_pred CCc--------CChHHhcCCCCCeEECcCCcccCcCCHHH-----hhhhhcCcEEECcCCeeeccC
Confidence 321 12335667777777777777765443322 2223 7777777777776533
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=1.1e-19 Score=205.18 Aligned_cols=297 Identities=19% Similarity=0.158 Sum_probs=147.6
Q ss_pred hhhhhhhhhccCCcccccchhhhhccchhhcccccccccccccceecccCceeEEEEeccCcchhh---hh-hhhccCCc
Q 010572 124 AELVVLPSFRGLISDINISDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEE---TC-QLLRESKL 199 (507)
Q Consensus 124 ~e~~~~~~~~~~l~di~~~~~~l~~~~~~~~~~c~~~~l~~l~~~c~~~~~~v~~L~L~~~l~~~~---~~-~ll~~~~L 199 (507)
.|++++.+||+++.| |. .+.+|. ...+||.| -||.|. +++|+.|+|.+.--.+. +. ++....+|
T Consensus 12 ~~~~all~~k~~~~~---~~-~l~~W~-~~~~~C~w-----~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 12 REIHQLISFKDVLPD---KN-LLPDWS-SNKNPCTF-----DGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp HHHHHHHHHHTTCSC---TT-SSTTCC-TTSCGGGS-----TTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred HHHHHHHHHHhhCCC---cc-cccCCC-CCCCCcCC-----cceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 789999999999986 76 889995 45689999 489998 67899999986332232 22 23333444
Q ss_pred CeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHH--HHHHHhccCCcccccccceeccccccccCCCC--
Q 010572 200 QSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVE--GICRSLCSKRKRIHKIENLSIDISSFIENCPS-- 275 (507)
Q Consensus 200 ~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~--~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~-- 275 (507)
+.++++.+.... .+..++++++|++|+|++|.+++..+. .+. . ...++.|+++.+.+......
T Consensus 80 ~~l~~~~~~~~~-----l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~-------l~~L~~L~Ls~n~l~~~~~~~~ 146 (768)
T 3rgz_A 80 ESLFLSNSHING-----SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG-S-------CSGLKFLNVSSNTLDFPGKVSG 146 (768)
T ss_dssp CEEECTTSCEEE-----CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG-G-------CTTCCEEECCSSEEECCSSCCS
T ss_pred cccCCcCCCcCC-----CchhhccCCCCCEEECCCCcCCCcCCChHHHh-C-------CCCCCEEECcCCccCCcCCHHH
Confidence 444443331110 001124456666666666666544332 210 0 12344444444432210000
Q ss_pred ---------------c---chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCccccc
Q 010572 276 ---------------S---VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY 337 (507)
Q Consensus 276 ---------------~---l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~ 337 (507)
. ........+..+++|++|+|++|.+.+.... ...++|++|+|++|.+++.++
T Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~-- 217 (768)
T 3rgz_A 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-------SRCVNLEFLDVSSNNFSTGIP-- 217 (768)
T ss_dssp CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-------TTCTTCCEEECCSSCCCSCCC--
T ss_pred hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-------ccCCcCCEEECcCCcCCCCCc--
Confidence 0 0011111233444444444444444332110 123455555555555543222
Q ss_pred ccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHH------------------HHHHhh
Q 010572 338 DRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFR------------------VLQDGV 397 (507)
Q Consensus 338 ~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~------------------~L~~aL 397 (507)
.++..++|++|.+.++. +.+.++..+. ++|++|+|++|.+...... .+...+
T Consensus 218 -------~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 218 -------FLGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp -------BCTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCS
T ss_pred -------ccccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHH
Confidence 23334444554444443 1112223333 5566666666655321000 011111
Q ss_pred cCC-CCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 398 TKE-LKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 398 ~~n-~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
... .+|++|+|++|.++...+.. +...++|++|++++|.+...-.. .++.. ..+|++|+|++|.+
T Consensus 290 ~~~~~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~ip~---~~l~~-l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 290 SGACDTLTGLDLSGNHFYGAVPPF----FGSCSLLESLALSSNNFSGELPM---DTLLK-MRGLKVLDLSFNEF 355 (768)
T ss_dssp CTTCTTCSEEECCSSEEEECCCGG----GGGCTTCCEEECCSSEEEEECCH---HHHTT-CTTCCEEECCSSEE
T ss_pred HhhcCcCCEEECcCCcCCCccchH----HhcCCCccEEECCCCcccCcCCH---HHHhc-CCCCCEEeCcCCcc
Confidence 122 45777777777665433322 23346788888888877522111 12333 35789999998886
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=4.4e-17 Score=180.19 Aligned_cols=82 Identities=9% Similarity=-0.078 Sum_probs=51.5
Q ss_pred hhhhhhhhhhccCCccccc-----chhhhhccchhhcccccccccccccceecccCceeEEEEeccCcchhhhh-hhhcc
Q 010572 123 AAELVVLPSFRGLISDINI-----SDTILNYIGYEQQMNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETC-QLLRE 196 (507)
Q Consensus 123 ~~e~~~~~~~~~~l~di~~-----~~~~l~~~~~~~~~~c~~~~l~~l~~~c~~~~~~v~~L~L~~~l~~~~~~-~ll~~ 196 (507)
.+|++++..++..+..-.- +......|+ ...++|.|..- -||.|... ++|+.|+|.+.--.+.+. ++...
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~-~~~~~c~w~~~--~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L 104 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWN-FNKELDMWGAQ--PGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQL 104 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCC-CSSCGGGTTCC--TTEEECTT-CCEEEEECTTSCCEEEECGGGGGC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC-CCCCcccccCC--CCeEEcCC-CCEEEEEecCcccCCcCChHHhcC
Confidence 4677788888776654110 011233575 34688999322 28899755 689999998643333343 55667
Q ss_pred CCcCeeeccccc
Q 010572 197 SKLQSLVLRWIR 208 (507)
Q Consensus 197 ~~L~~L~Ls~~~ 208 (507)
.+|++|+|+++.
T Consensus 105 ~~L~~L~Ls~N~ 116 (636)
T 4eco_A 105 TELEVLALGSHG 116 (636)
T ss_dssp TTCCEEESCCGG
T ss_pred ccceEEECcCCc
Confidence 889999998873
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1.1e-16 Score=182.89 Aligned_cols=312 Identities=13% Similarity=0.062 Sum_probs=170.6
Q ss_pred hhhhhhhhhhccCCcccccchhhhhccchhh----ccc--cccccccc-------ccceecccCceeEEEEeccCcchhh
Q 010572 123 AAELVVLPSFRGLISDINISDTILNYIGYEQ----QMN--HLACDYSK-------LSYHCQQFGHYARCLRLQNALCVEE 189 (507)
Q Consensus 123 ~~e~~~~~~~~~~l~di~~~~~~l~~~~~~~----~~~--c~~~~l~~-------l~~~c~~~~~~v~~L~L~~~l~~~~ 189 (507)
..|++++..|+.++.+ | +|.... .++ |.|.-.+. -||.|.. .++|..|+|.+.--.+.
T Consensus 268 ~~d~~ALl~~k~~l~~---~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 268 IKDYKALKAIWEALDG---K-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp HHHHHHHHHHHHHTTG---G-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred hHHHHHHHHHHHHcCC---C-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence 4689999999998876 5 674432 233 89810011 3788876 46799999986433334
Q ss_pred hh-hhhccCCcCeeec-ccccChhh------------------------------------HHHH---------------
Q 010572 190 TC-QLLRESKLQSLVL-RWIRFEEH------------------------------------VQAL--------------- 216 (507)
Q Consensus 190 ~~-~ll~~~~L~~L~L-s~~~~~~~------------------------------------~~~l--------------- 216 (507)
+. ++.....|++|+| ++|...+. +..+
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 43 5566788999999 65521111 0000
Q ss_pred ---------------------HHHHhhCCCCccEEEeecCCCChh-----------------HHHHHHHHhccCCccccc
Q 010572 217 ---------------------CKLLIQNSETLASLEFLHCKLSPS-----------------FVEGICRSLCSKRKRIHK 258 (507)
Q Consensus 217 ---------------------~~~L~~~~~~L~~LdLs~~~ls~~-----------------~~~~L~~~L~~~~~~~~~ 258 (507)
++.-++++++|++|+|++|.|+++ .+..+ ... ....
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l----~f~--~L~~ 492 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL----SWS--NLKD 492 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC----CGG--GCTT
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhh----hhc--cCCC
Confidence 122345678999999999999983 22211 000 1234
Q ss_pred ccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC-CCc-hHHHHHHHH--hccCCCCccEEECcCCCCCCcc
Q 010572 259 IENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDR-DFGRMVFSS--LLEASSSLSILDLSGNSIGGWL 334 (507)
Q Consensus 259 l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~-L~~-~g~~~L~~~--L~~~~~~L~~LdLS~N~L~~~l 334 (507)
++.|+++.|.+.. . +...+..+++|++|+|++|+ +.+ ..+..+... -....++|+.|+|++|.|+ .+
T Consensus 493 L~~L~Ls~N~l~~----~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i 563 (876)
T 4ecn_A 493 LTDVELYNCPNMT----Q----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF 563 (876)
T ss_dssp CCEEEEESCTTCC----S----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred CCEEECcCCCCCc----c----ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence 7777777665432 1 22446777888888888887 776 444333211 1123467888888888877 22
Q ss_pred cc---cc-cCC----------chh--hcccCCCcCccccccchhHHHHHHhhhc--CC-CcEEEeccCCCCchhHHHHHH
Q 010572 335 SK---YD-RSG----------PLF--SLGAGKSLQSLRLLNLSHIAASLGKFFG--TS-VQVLNIGAIGLGSSGFRVLQD 395 (507)
Q Consensus 335 ~~---~~-~~~----------l~~--~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~-L~~L~Ls~n~l~~~G~~~L~~ 395 (507)
+. +. ... +.. .++..++|+.|.+.+|. +. .++..+. .. |++|+|++|.|+.. ..
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~-l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-----p~ 636 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ-IE-EIPEDFCAFTDQVEGLGFSHNKLKYI-----PN 636 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC-CS-CCCTTSCEECTTCCEEECCSSCCCSC-----CS
T ss_pred CChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc-cc-cchHHHhhccccCCEEECcCCCCCcC-----ch
Confidence 21 00 000 000 22333334444444433 11 3333333 44 77777777776631 12
Q ss_pred hhcC--CCCCCEEeccCCCCChHHHHHHHhhC-CCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 396 GVTK--ELKLVNINISKNRGGVETAKFLSKLM-PLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 396 aL~~--n~~L~~LdLs~N~i~~~g~~~L~~~L-~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+.. ...|++|+|++|.++...+.+.+..- ...++|+.|+|++|.|+.-. ..+-....+|+.|+|++|.+
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp-----~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP-----TELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC-----HHHHHTTCCCSEEECCSCCC
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC-----HHHHccCCCCCEEECCCCcC
Confidence 2222 22377777777777653221110000 02236788888888877321 11111235688888888876
No 17
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=2.2e-15 Score=151.98 Aligned_cols=226 Identities=18% Similarity=0.195 Sum_probs=145.3
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
.++.+++....-.+.........+|++|+++++..... + .+..+..+++|++|+|++|.+++..+..+..
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~--~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~------- 140 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS--T-LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK------- 140 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH--H-HHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-------
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH--H-HHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-------
Confidence 46667765422111112233456788888887743221 1 2233456788888888888888776665422
Q ss_pred ccccccceeccccccccCCCCcchH-HHHHHHhCCCCCCEEEccCC-CCCchHHHHHHHHhccCCC-CccEEECcCC--C
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVV-ELVSFLSSGRSLCSLKLRHC-HLDRDFGRMVFSSLLEASS-SLSILDLSGN--S 329 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~-~L~~~L~~~~sL~~L~LS~N-~L~~~g~~~L~~~L~~~~~-~L~~LdLS~N--~ 329 (507)
...++.|+++.+.. ++. .+...+..+++|++|+|++| .+++.+...... ..+ +|++|+|++| .
T Consensus 141 -~~~L~~L~L~~~~~-------l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 141 -NSNLVRLNLSGCSG-------FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA----HVSETITQLNLSGYRKN 208 (336)
T ss_dssp -CTTCSEEECTTCBS-------CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH----HSCTTCCEEECCSCGGG
T ss_pred -CCCCCEEECCCCCC-------CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH----hcccCCCEEEeCCCccc
Confidence 13467777665521 122 35556677788888888888 887776544332 236 7888888887 3
Q ss_pred CCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCC-CCchhHHHHHHhhcCCCCCCEE
Q 010572 330 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNI 406 (507)
Q Consensus 330 L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~L 406 (507)
+++ ..+...+. ++|++|+|++|. +++.+...+ ....+|++|
T Consensus 209 ~~~--------------------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L 252 (336)
T 2ast_B 209 LQK--------------------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF----FQLNYLQHL 252 (336)
T ss_dssp SCH--------------------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG----GGCTTCCEE
T ss_pred CCH--------------------------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH----hCCCCCCEe
Confidence 432 11112222 689999999999 777766544 445889999
Q ss_pred eccCC-CCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 407 NISKN-RGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 407 dLs~N-~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+|++| .+++.+...+ ...++|+.|++++| ++++++..+++. ++.|++++|.+
T Consensus 253 ~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~-i~~~~~~~l~~~-------l~~L~l~~n~l 305 (336)
T 2ast_B 253 SLSRCYDIIPETLLEL----GEIPTLKTLQVFGI-VPDGTLQLLKEA-------LPHLQINCSHF 305 (336)
T ss_dssp ECTTCTTCCGGGGGGG----GGCTTCCEEECTTS-SCTTCHHHHHHH-------STTSEESCCCS
T ss_pred eCCCCCCCCHHHHHHH----hcCCCCCEEeccCc-cCHHHHHHHHhh-------CcceEEecccC
Confidence 99999 5777665444 34688999999999 999888877643 45566888887
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.59 E-value=1.1e-15 Score=160.43 Aligned_cols=181 Identities=20% Similarity=0.167 Sum_probs=117.6
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccC----------------------------------CCCccEEECcCCCC
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEA----------------------------------SSSLSILDLSGNSI 330 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~----------------------------------~~~L~~LdLS~N~L 330 (507)
+..+++|++|+|++|++++..+..++..+... .++|++|+|++|.+
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence 44568899999999999999888776653210 13455555555555
Q ss_pred CCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEec
Q 010572 331 GGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI 408 (507)
Q Consensus 331 ~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdL 408 (507)
++..+. .++..++|+.|.+.++. +.+..+..+. ..|++|+|++|.++.... ..+....+|++|+|
T Consensus 288 ~~~~~~--------~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L 354 (455)
T 3v47_A 288 FALLKS--------VFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSIDS----RMFENLDKLEVLDL 354 (455)
T ss_dssp CEECTT--------TTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECG----GGGTTCTTCCEEEC
T ss_pred cccchh--------hcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCcCh----hHhcCcccCCEEEC
Confidence 432221 45556667777666654 1111122333 789999999999976532 33455678999999
Q ss_pred cCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 409 SKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 409 s~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
++|.++..++. .+...++|++|+|++|.|+..... ++.. ..+|+.|+|++|++.-.......+....+..
T Consensus 355 s~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~----~~~~-l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~ 424 (455)
T 3v47_A 355 SYNHIRALGDQ----SFLGLPNLKELALDTNQLKSVPDG----IFDR-LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 424 (455)
T ss_dssp CSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTT----TTTT-CTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred CCCcccccChh----hccccccccEEECCCCccccCCHh----Hhcc-CCcccEEEccCCCcccCCCcchHHHHHHHhC
Confidence 99999876543 344568899999999999863321 2332 3689999999999843333345555554433
No 19
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=1.2e-14 Score=157.68 Aligned_cols=222 Identities=13% Similarity=0.036 Sum_probs=152.2
Q ss_pred hhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEcc---
Q 010572 221 IQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLR--- 297 (507)
Q Consensus 221 ~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS--- 297 (507)
...+++|++|+|++|.+++..+..+...+ ..++.|.+. ..+. ..++......+++|++|+|+
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~-------~~L~~L~L~-~~~~-------~~~l~~~~~~~~~L~~L~L~~g~ 353 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKC-------PNLEVLETR-NVIG-------DRGLEVLAQYCKQLKRLRIERGA 353 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTC-------TTCCEEEEE-GGGH-------HHHHHHHHHHCTTCCEEEEECCC
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhC-------cCCCEEecc-CccC-------HHHHHHHHHhCCCCCEEEeecCc
Confidence 34456788888888888777765543322 246666655 2211 12344555678889999999
Q ss_pred --------CCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhccc-CCCcCcccccc----ch---
Q 010572 298 --------HCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGA-GKSLQSLRLLN----LS--- 361 (507)
Q Consensus 298 --------~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~-~~~L~~L~ll~----l~--- 361 (507)
.|.+++.|...++.. .++|++|+|+.|.+++.... .+.. +++|++|++.. +.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~l~~~~~~--------~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 354 DEQGMEDEEGLVSQRGLIALAQG----CQELEYMAVYVSDITNESLE--------SIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp CSSTTSSTTCCCCHHHHHHHHHH----CTTCSEEEEEESCCCHHHHH--------HHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred cccccccccCccCHHHHHHHHhh----CccCeEEEeecCCccHHHHH--------HHHhhCCCCcEEEEeecCCCccccC
Confidence 478888887766443 47899999988888853221 2332 56677777752 11
Q ss_pred ----hHHHHHHhhhcCCCcEEEeccCC--CCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 362 ----HIAASLGKFFGTSVQVLNIGAIG--LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 362 ----~~~~~L~~~l~~~L~~L~Ls~n~--l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
.+...+... -++|++|+|+.|. +++.+...++.. ..+|++|+|++|.+++.+...+... .++|+.|+
T Consensus 422 ~p~~~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~---~~~L~~L~ 494 (592)
T 3ogk_B 422 LPLDNGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQY---SPNVRWMLLGYVGESDEGLMEFSRG---CPNLQKLE 494 (592)
T ss_dssp CCCHHHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHHHS---CTTCCEEEECSCCSSHHHHHHHHTC---CTTCCEEE
T ss_pred chHHHHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHHHh---CccceEeeccCCCCCHHHHHHHHhc---CcccCeee
Confidence 133333221 1789999998644 888887777653 4569999999999999887766543 47899999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHH
Q 010572 436 AGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSE 482 (507)
Q Consensus 436 Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~ 482 (507)
+++|.|++.++..++..+ .+|+.|+|++|.+ +..+.+.+++
T Consensus 495 l~~n~l~~~~~~~~~~~l----~~L~~L~ls~n~i--t~~~~~~l~~ 535 (592)
T 3ogk_B 495 MRGCCFSERAIAAAVTKL----PSLRYLWVQGYRA--SMTGQDLMQM 535 (592)
T ss_dssp EESCCCBHHHHHHHHHHC----SSCCEEEEESCBC--CTTCTTGGGG
T ss_pred ccCCCCcHHHHHHHHHhc----CccCeeECcCCcC--CHHHHHHHHH
Confidence 999999998888776544 4799999999995 6666655543
No 20
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=9.4e-14 Score=150.46 Aligned_cols=97 Identities=10% Similarity=0.041 Sum_probs=79.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
++|++|+|++ .+++.+...++.. ..+|++|+|++|.+++.++..++.. +++|+.|+|++|.+++.|+..++..
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~---~~~L~~L~L~~~~i~~~~~~~l~~~---~~~L~~L~L~~n~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTY---AKKMEMLSVAFAGDSDLGMHHVLSG---CDSLRKLEIRDCPFGDKALLANASK 504 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHH---CTTCCEEEEESCCSSHHHHHHHHHH---CTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred CCccEEeecC-cccHHHHHHHHHh---chhccEeeccCCCCcHHHHHHHHhc---CCCcCEEECcCCCCcHHHHHHHHHh
Confidence 6799999977 8888888777763 4579999999999999999888665 4789999999999998888766544
Q ss_pred HhcCCCCccEEEecCCCCCCCccHHHHHHH
Q 010572 453 LKVAKGHLQRLDLTGNNWELQPSHVSMLSE 482 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~~~~~~~~~~l~~ 482 (507)
+ .+|+.|+|++|.+ ++++.+.+++
T Consensus 505 l----~~L~~L~l~~~~~--~~~~~~~l~~ 528 (594)
T 2p1m_B 505 L----ETMRSLWMSSCSV--SFGACKLLGQ 528 (594)
T ss_dssp G----GGSSEEEEESSCC--BHHHHHHHHH
T ss_pred C----CCCCEEeeeCCCC--CHHHHHHHHH
Confidence 4 4799999999985 7777777643
No 21
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.53 E-value=4.6e-15 Score=151.43 Aligned_cols=276 Identities=16% Similarity=0.138 Sum_probs=172.3
Q ss_pred eeEEEEeccCcchhhh-hhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCC
Q 010572 175 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~-~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~ 253 (507)
.++.|++.+..-.... ..+.....|++|+++++.... +.+..+.++++|++|+|++|.++.-....+ ..
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~----- 122 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT----IEEDSFSSLGSLEHLDLSYNYLSNLSSSWF-KP----- 122 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSSCCHHHH-TT-----
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc----cCHhhcCCCCCCCEEECCCCcCCcCCHhHh-CC-----
Confidence 5778888642211101 123345678888888774321 111123456788999999888875333222 11
Q ss_pred cccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC-CCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 254 ~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~-L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
...++.|+++.+.+.+... ...+..+++|++|+|++|+ ++...... ....++|++|+|++|.+++
T Consensus 123 --l~~L~~L~L~~n~l~~l~~-------~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 123 --LSSLTFLNLLGNPYKTLGE-------TSLFSHLTKLQILRVGNMDTFTKIQRKD-----FAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp --CTTCSEEECTTCCCSSSCS-------SCSCTTCTTCCEEEEEESSSCCEECTTT-----TTTCCEEEEEEEEETTCCE
T ss_pred --CccCCEEECCCCCCcccCc-------hhhhccCCCCcEEECCCCccccccCHHH-----ccCCCCCCEEECCCCCcCc
Confidence 1357778777766533111 0135677889999999884 65543322 1345888999999998886
Q ss_pred cccccccCCchhhcccCCCcCccccccch--hHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccC
Q 010572 333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLS--HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISK 410 (507)
Q Consensus 333 ~l~~~~~~~l~~~L~~~~~L~~L~ll~l~--~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~ 410 (507)
..+. .+...++|++|.+.++. ........ ..++|++|+|++|.++..+...+.. ......++.++|+.
T Consensus 189 ~~~~--------~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 189 YEPK--------SLKSIQNVSHLILHMKQHILLLEIFVD-VTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRN 258 (353)
T ss_dssp ECTT--------TTTTCSEEEEEEEECSCSTTHHHHHHH-HTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEES
T ss_pred cCHH--------HHhccccCCeecCCCCccccchhhhhh-hcccccEEECCCCcccccccccccc-ccccchhhcccccc
Confidence 4332 55566667777766665 11111111 1278999999999998765544432 23456799999999
Q ss_pred CCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCC
Q 010572 411 NRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLP 489 (507)
Q Consensus 411 N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~ 489 (507)
|.+++.+...+...+...++|++|++++|.|+.-.. .++.. ..+|++|+|++|++.-.......+....++...
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~----~~~~~-l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~ 332 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD----GIFDR-LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 332 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT----TTTTT-CTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTT
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH----HHHhc-CCCCCEEEeeCCCccCcCCCcHHHHHHHHhccc
Confidence 999999888888888888999999999999984221 11232 368999999999983333345556555555433
No 22
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=6.7e-14 Score=140.98 Aligned_cols=207 Identities=15% Similarity=0.160 Sum_probs=144.0
Q ss_pred ceeEEEEeccCcchhh-hhh-hhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecC-CCChhHHHHHHHHhc
Q 010572 174 HYARCLRLQNALCVEE-TCQ-LLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHC-KLSPSFVEGICRSLC 250 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~-~~~-ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~-~ls~~~~~~L~~~L~ 250 (507)
.+++.|++.+..-... +.. +....+|++|+++++..... .+..+..+++|++|+|++| .+++.++..++..+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHH----HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 4688899975332221 322 23356899999998854322 2222346789999999999 799887777666543
Q ss_pred cCCcccccccceecccc-ccccCCCCcchHHHHHHHhCCC-CCCEEEccCC--CCCchHHHHHHHHhccCCCCccEEECc
Q 010572 251 SKRKRIHKIENLSIDIS-SFIENCPSSVVVELVSFLSSGR-SLCSLKLRHC--HLDRDFGRMVFSSLLEASSSLSILDLS 326 (507)
Q Consensus 251 ~~~~~~~~l~~L~l~~~-~~le~~~~~l~~~L~~~L~~~~-sL~~L~LS~N--~L~~~g~~~L~~~L~~~~~~L~~LdLS 326 (507)
.++.|+++.+ .+.+ .++...+..++ +|++|+|++| .+++.+...... ..++|++|+|+
T Consensus 169 -------~L~~L~l~~~~~l~~-------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~----~~~~L~~L~l~ 230 (336)
T 2ast_B 169 -------RLDELNLSWCFDFTE-------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR----RCPNLVHLDLS 230 (336)
T ss_dssp -------TCCEEECCCCTTCCH-------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH----HCTTCSEEECT
T ss_pred -------CCCEEcCCCCCCcCh-------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh----hCCCCCEEeCC
Confidence 4788888776 4321 23566788899 9999999999 678776654432 35899999999
Q ss_pred CCC-CCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccC-CCCchhHHHHHHhhcCCCCCC
Q 010572 327 GNS-IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAI-GLGSSGFRVLQDGVTKELKLV 404 (507)
Q Consensus 327 ~N~-L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n-~l~~~G~~~L~~aL~~n~~L~ 404 (507)
+|. +++.... .+. .. ++|++|+|++| .+++.+... +....+|+
T Consensus 231 ~~~~l~~~~~~--------~l~---------------------~l--~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~ 275 (336)
T 2ast_B 231 DSVMLKNDCFQ--------EFF---------------------QL--NYLQHLSLSRCYDIIPETLLE----LGEIPTLK 275 (336)
T ss_dssp TCTTCCGGGGG--------GGG---------------------GC--TTCCEEECTTCTTCCGGGGGG----GGGCTTCC
T ss_pred CCCcCCHHHHH--------HHh---------------------CC--CCCCEeeCCCCCCCCHHHHHH----HhcCCCCC
Confidence 999 6642211 111 11 67889999998 677776533 44577899
Q ss_pred EEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh
Q 010572 405 NINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE 444 (507)
Q Consensus 405 ~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~ 444 (507)
+|+|++| +++++...+.+. |..|++++|.++..
T Consensus 276 ~L~l~~~-i~~~~~~~l~~~------l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 276 TLQVFGI-VPDGTLQLLKEA------LPHLQINCSHFTTI 308 (336)
T ss_dssp EEECTTS-SCTTCHHHHHHH------STTSEESCCCSCCT
T ss_pred EEeccCc-cCHHHHHHHHhh------CcceEEecccCccc
Confidence 9999999 888888877643 55567899999753
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.51 E-value=1.4e-15 Score=151.95 Aligned_cols=230 Identities=17% Similarity=0.107 Sum_probs=147.9
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhH--HHHHHHHhccCCcccccccceeccccccccCCC
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSF--VEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~--~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~ 274 (507)
..+++|+++++... .+-...+.++++|++|+|++|.++... ...+. . ...++.|+++.+.+.+
T Consensus 28 ~~l~~L~L~~n~l~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~-------~~~L~~L~Ls~n~i~~--- 92 (306)
T 2z66_A 28 SSATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-G-------TTSLKYLDLSFNGVIT--- 92 (306)
T ss_dssp TTCCEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-S-------CSCCCEEECCSCSEEE---
T ss_pred CCCCEEECCCCccC----ccCHhHhhccccCCEEECCCCccCcccCcccccc-c-------ccccCEEECCCCcccc---
Confidence 35777888766432 111122346678888888888877432 11111 1 1347777777665432
Q ss_pred CcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCc
Q 010572 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (507)
Q Consensus 275 ~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~ 354 (507)
+ ...+..+++|++|+|++|.+.+..... . ....++|++|+|++|.+++..+. .+...++|+.
T Consensus 93 --l----~~~~~~l~~L~~L~l~~n~l~~~~~~~---~-~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~ 154 (306)
T 2z66_A 93 --M----SSNFLGLEQLEHLDFQHSNLKQMSEFS---V-FLSLRNLIYLDISHTHTRVAFNG--------IFNGLSSLEV 154 (306)
T ss_dssp --E----EEEEETCTTCCEEECTTSEEESSTTTT---T-TTTCTTCCEEECTTSCCEECSTT--------TTTTCTTCCE
T ss_pred --C----hhhcCCCCCCCEEECCCCcccccccch---h-hhhccCCCEEECCCCcCCccchh--------hcccCcCCCE
Confidence 1 122566788999999999887654310 1 23458899999999988754332 4555666777
Q ss_pred cccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCcc
Q 010572 355 LRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELV 432 (507)
Q Consensus 355 L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~ 432 (507)
|.+.++.-....++..+. .+|++|+|++|.++.... ..+....+|++|+|++|.++...... +...++|+
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~ 226 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNNFFSLDTFP----YKCLNSLQ 226 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCSBCCSGG----GTTCTTCC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCCccCccChhh----ccCcccCC
Confidence 777666411112233333 789999999999987532 33455678999999999987654322 34567899
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCC
Q 010572 433 EVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 471 (507)
Q Consensus 433 ~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~ 471 (507)
.|++++|.+...... .+.....+|+.|+|++|.+.
T Consensus 227 ~L~L~~N~l~~~~~~----~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQ----ELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EEECTTSCCCBCSSS----SCCCCCTTCCEEECTTCCEE
T ss_pred EeECCCCCCcccCHH----HHHhhhccCCEEEccCCCee
Confidence 999999999865432 22222247999999999983
No 24
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=2.3e-13 Score=147.52 Aligned_cols=245 Identities=18% Similarity=0.151 Sum_probs=136.5
Q ss_pred cCCcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCC-CChhHHHHHHHHhccCCcccccccceeccccccccCC
Q 010572 196 ESKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 273 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~-ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~ 273 (507)
...|++|+|+++.. +.....+...+. .+|++|+|++|. +++.+...+...+. .++.|+++.+.+.+..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~---~~L~~L~L~~~~~~~~~~l~~~~~~~~-------~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARA---DDLETLKLDKCSGFTTDGLLSIVTHCR-------KIKTLLMEESSFSEKD 180 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHG---GGCCEEEEESCEEEEHHHHHHHHHHCT-------TCSEEECTTCEEECCC
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhcc---ccCcEEECcCCCCcCHHHHHHHHhhCC-------CCCEEECccccccCcc
Confidence 45789999987743 333333332221 249999999987 66666666655432 4788888877654322
Q ss_pred CCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCccccc-----------c-c--
Q 010572 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKY-----------D-R-- 339 (507)
Q Consensus 274 ~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~-----------~-~-- 339 (507)
. ..+...+..+++|++|+|++|.+++.+...+...+ ...++|++|+|++|.+++....+ . .
T Consensus 181 ~----~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 181 G----KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE 255 (592)
T ss_dssp S----HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCC
T ss_pred h----hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccccccc
Confidence 1 22556677889999999999999733333333222 34589999999999876411000 0 0
Q ss_pred ----CCchhhcccCC-----------------------CcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhH
Q 010572 340 ----SGPLFSLGAGK-----------------------SLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGF 390 (507)
Q Consensus 340 ----~~l~~~L~~~~-----------------------~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~ 390 (507)
......+...+ +|++|.+.++.-....+...+. ++|++|+|+ +.+++.|.
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l 334 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGL 334 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHH
T ss_pred ccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHH
Confidence 00000112222 2333333222201111111111 445555554 33444443
Q ss_pred HHHHHhhcCCCCCCEEecc-----------CCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCC
Q 010572 391 RVLQDGVTKELKLVNINIS-----------KNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGH 459 (507)
Q Consensus 391 ~~L~~aL~~n~~L~~LdLs-----------~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~ 459 (507)
..++.. ..+|++|+|+ .|.+++.+...+...+ ++|++|+++.|.+++++...++..+ .+
T Consensus 335 ~~~~~~---~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~----~~ 404 (592)
T 3ogk_B 335 EVLAQY---CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC---QELEYMAVYVSDITNESLESIGTYL----KN 404 (592)
T ss_dssp HHHHHH---CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC---TTCSEEEEEESCCCHHHHHHHHHHC----CS
T ss_pred HHHHHh---CCCCCEEEeecCccccccccccCccCHHHHHHHHhhC---ccCeEEEeecCCccHHHHHHHHhhC----CC
Confidence 333322 3457777777 4667777666655443 5677777777777777776665433 35
Q ss_pred ccEEEec
Q 010572 460 LQRLDLT 466 (507)
Q Consensus 460 L~~LdL~ 466 (507)
|+.|+|+
T Consensus 405 L~~L~l~ 411 (592)
T 3ogk_B 405 LCDFRLV 411 (592)
T ss_dssp CCEEEEE
T ss_pred CcEEEEe
Confidence 7777775
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.49 E-value=4.3e-15 Score=156.04 Aligned_cols=192 Identities=18% Similarity=0.144 Sum_probs=115.7
Q ss_pred ceeEEEEeccCcchhh-hhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccC
Q 010572 174 HYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~-~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~ 252 (507)
.+++.|+|....-... ...+....+|++|+++++...... -+..+.++++|++|+|++|.+++..+..+ .
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~-- 100 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYNQFLQLETGAF----N-- 100 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTCTTCEECTTTT----T--
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceE---CcccccccccCCEEeCCCCccCccChhhc----c--
Confidence 5688899875221111 113344668999999877432111 11123567899999999998875433222 1
Q ss_pred CcccccccceeccccccccCCCCcchHHHHH--HHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCC
Q 010572 253 RKRIHKIENLSIDISSFIENCPSSVVVELVS--FLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI 330 (507)
Q Consensus 253 ~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~--~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L 330 (507)
....++.|+++.+.+.+ .+.. ++..+++|++|+|++|.+.+..... +....++|++|+|++|.|
T Consensus 101 --~l~~L~~L~L~~n~l~~--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 101 --GLANLEVLTLTQCNLDG--------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS----FFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp --TCTTCCEEECTTSCCBT--------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCG----GGGGCTTCCEEECTTCCB
T ss_pred --CcccCCEEeCCCCCCCc--------cccCcccccCcccCCEEECCCCccCccCccc----ccCCCCcccEEeCCCCcc
Confidence 11347777777665421 1222 3778899999999999998764432 124468999999999999
Q ss_pred CCcccccccCCchhhccc--CCCcCccccccch-------hHHHHHHhh-hc-CCCcEEEeccCCCCchhHHHHHHh
Q 010572 331 GGWLSKYDRSGPLFSLGA--GKSLQSLRLLNLS-------HIAASLGKF-FG-TSVQVLNIGAIGLGSSGFRVLQDG 396 (507)
Q Consensus 331 ~~~l~~~~~~~l~~~L~~--~~~L~~L~ll~l~-------~~~~~L~~~-l~-~~L~~L~Ls~n~l~~~G~~~L~~a 396 (507)
++..+. .+.. ...++.|.+.++. ......+.. .. ++|++|+|++|.++......+...
T Consensus 167 ~~~~~~--------~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 167 KSICEE--------DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp SCCCTT--------TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred cccChh--------hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 864332 1211 1334555554443 111111111 12 689999999999998777766654
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.48 E-value=6.3e-16 Score=155.94 Aligned_cols=228 Identities=16% Similarity=0.166 Sum_probs=155.9
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeec-CCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH-CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~-~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
.++++|+++++...... ..+..+.++++|++|+|++ |.+.+..+..+. . ...++.|+++.+.+..
T Consensus 50 ~~l~~L~L~~~~l~~~~--~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~-~-------l~~L~~L~Ls~n~l~~---- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-K-------LTQLHYLYITHTNVSG---- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCE--ECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-G-------CTTCSEEEEEEECCEE----
T ss_pred ceEEEEECCCCCccCCc--ccChhHhCCCCCCeeeCCCCCcccccCChhHh-c-------CCCCCEEECcCCeeCC----
Confidence 46788998877443200 1112335678999999995 887765544331 1 2357888888776532
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCC-CcCc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK-SLQS 354 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~-~L~~ 354 (507)
.+...+..+++|++|+|++|.+.+..+..+ ...++|++|+|++|.|++.++. .+.... .|+.
T Consensus 116 ----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p~--------~l~~l~~~L~~ 178 (313)
T 1ogq_A 116 ----AIPDFLSQIKTLVTLDFSYNALSGTLPPSI-----SSLPNLVGITFDGNRISGAIPD--------SYGSFSKLFTS 178 (313)
T ss_dssp ----ECCGGGGGCTTCCEEECCSSEEESCCCGGG-----GGCTTCCEEECCSSCCEEECCG--------GGGCCCTTCCE
T ss_pred ----cCCHHHhCCCCCCEEeCCCCccCCcCChHH-----hcCCCCCeEECcCCcccCcCCH--------HHhhhhhcCcE
Confidence 123356789999999999999986544322 3469999999999999865543 455555 6777
Q ss_pred cccccchhHHHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 355 LRLLNLSHIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 355 L~ll~l~~~~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
|.+.++. +.+.++..+. .+|++|+|++|.++.. +...+....+|++|+|++|.++..... +...++|++
T Consensus 179 L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~ 248 (313)
T 1ogq_A 179 MTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNG 248 (313)
T ss_dssp EECCSSE-EEEECCGGGGGCCCSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCE
T ss_pred EECcCCe-eeccCChHHhCCcccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCE
Confidence 7777765 1112223333 4599999999998753 234456678899999999998754332 445678999
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+|++|.|..... .++... .+|+.|+|++|.+
T Consensus 249 L~Ls~N~l~~~~p----~~l~~l-~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 249 LDLRNNRIYGTLP----QGLTQL-KFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSCCEECCC----GGGGGC-TTCCEEECCSSEE
T ss_pred EECcCCcccCcCC----hHHhcC-cCCCEEECcCCcc
Confidence 9999999974322 234433 5899999999998
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.48 E-value=2.3e-15 Score=169.87 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=64.5
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|+.|||++|.++.. +...+.....|++|+|++|.+++..+..++. .++|++|||++|.+...... .
T Consensus 632 ~~L~~LdLs~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~----L~~L~~LdLs~N~l~g~ip~----~ 699 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGY----IPKEIGSMPYLFILNLGHNDISGSIPDEVGD----LRGLNILDLSSNKLDGRIPQ----A 699 (768)
T ss_dssp BCCCEEECCSSCCBSC----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGG----CTTCCEEECCSSCCEECCCG----G
T ss_pred ccccEEECcCCccccc----CCHHHhccccCCEEeCcCCccCCCCChHHhC----CCCCCEEECCCCcccCcCCh----H
Confidence 5689999999998632 3334556778999999999998776655543 47899999999999754322 2
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+..- ..|+.|||++|++
T Consensus 700 l~~l-~~L~~L~ls~N~l 716 (768)
T 3rgz_A 700 MSAL-TMLTEIDLSNNNL 716 (768)
T ss_dssp GGGC-CCCSEEECCSSEE
T ss_pred HhCC-CCCCEEECcCCcc
Confidence 3333 5799999999998
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.47 E-value=2.5e-14 Score=151.61 Aligned_cols=227 Identities=17% Similarity=0.117 Sum_probs=117.7
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
..+|++|+++++... .+....+.++++|++|+|++|.+.......+ . ....++.|.++.+.+....
T Consensus 79 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~----~l~~L~~L~l~~n~l~~~~-- 144 (477)
T 2id5_A 79 LFNLRTLGLRSNRLK----LIPLGVFTGLSNLTKLDISENKIVILLDYMF----Q----DLYNLKSLEVGDNDLVYIS-- 144 (477)
T ss_dssp CTTCCEEECCSSCCC----SCCTTSSTTCTTCCEEECTTSCCCEECTTTT----T----TCTTCCEEEECCTTCCEEC--
T ss_pred CccCCEEECCCCcCC----ccCcccccCCCCCCEEECCCCccccCChhHc----c----ccccCCEEECCCCccceeC--
Confidence 445666666655321 1111112345666666666666653321111 0 0123555555554432211
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCC-----
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK----- 350 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~----- 350 (507)
...+..+++|++|+|++|++.......+ ...++|+.|+|++|.+++.... .+....
T Consensus 145 ------~~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~~~~--------~~~~l~~L~~L 205 (477)
T 2id5_A 145 ------HRAFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAIRDY--------SFKRLYRLKVL 205 (477)
T ss_dssp ------TTSSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEECTT--------CSCSCTTCCEE
T ss_pred ------hhhccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEeChh--------hcccCccccee
Confidence 1234556777777777777766554322 3346777777777777642211 222222
Q ss_pred -------------------CcCccccccchhHHHHHH-hhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEec
Q 010572 351 -------------------SLQSLRLLNLSHIAASLG-KFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINI 408 (507)
Q Consensus 351 -------------------~L~~L~ll~l~~~~~~L~-~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdL 408 (507)
+|++|.+.++. +. .++ ..+. .+|++|+|++|.|+.... .++....+|++|+|
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L 279 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCN-LT-AVPYLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQL 279 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSC-CC-SCCHHHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEEC
T ss_pred eCCCCccccccCcccccCccccEEECcCCc-cc-ccCHHHhcCccccCeeECCCCcCCccCh----hhccccccCCEEEC
Confidence 33344333332 00 010 1122 566677777766664332 22334556777777
Q ss_pred cCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 409 SKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 409 s~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++|.++..... .+...++|+.|+|++|.|+.-... ++. ...+|+.|+|++|++
T Consensus 280 ~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~----~~~-~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 280 VGGQLAVVEPY----AFRGLNYLRVLNVSGNQLTTLEES----VFH-SVGNLETLILDSNPL 332 (477)
T ss_dssp CSSCCSEECTT----TBTTCTTCCEEECCSSCCSCCCGG----GBS-CGGGCCEEECCSSCE
T ss_pred CCCccceECHH----HhcCcccCCEEECCCCcCceeCHh----HcC-CCcccCEEEccCCCc
Confidence 77777654332 344557788888888888753321 222 224788899999887
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.46 E-value=1.7e-14 Score=149.08 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=60.8
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
..+|++|+++++.... +.+..+..+++|++|+|++|.+++..+..+ . ....++.|+++.+.+.+
T Consensus 68 l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~----~l~~L~~L~L~~n~l~~---- 131 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVF----Q----NVPLLTVLVLERNDLSS---- 131 (390)
T ss_dssp CCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCTTTT----T----TCTTCCEEECCSSCCCC----
T ss_pred cccCcEEECCCCcccc----cChhhccCCCCcCEEECCCCCCCcCCHHHh----c----CCCCCCEEECCCCccCc----
Confidence 4567888877663221 111122456778888888887764322111 0 01236666666655432
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
++. ..+..+++|++|+|++|.+....... + ...++|++|+|++|.+++
T Consensus 132 -l~~---~~~~~l~~L~~L~L~~n~l~~~~~~~----~-~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 132 -LPR---GIFHNTPKLTTLSMSNNNLERIEDDT----F-QATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp -CCT---TTTTTCTTCCEEECCSSCCCBCCTTT----T-SSCTTCCEEECCSSCCSB
T ss_pred -CCH---HHhcCCCCCcEEECCCCccCccChhh----c-cCCCCCCEEECCCCcCCc
Confidence 111 12455667777777777776544321 1 334667777777777663
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.46 E-value=9.4e-13 Score=133.34 Aligned_cols=234 Identities=18% Similarity=0.152 Sum_probs=105.3
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
.++.|++....- ..+..+....+|++|+++++....- .. +..+++|++|++++|........ +..
T Consensus 89 ~L~~L~L~~n~i-~~~~~~~~l~~L~~L~l~~n~i~~~----~~--~~~l~~L~~L~l~~n~~~~~~~~-----~~~--- 153 (347)
T 4fmz_A 89 KLTNLYIGTNKI-TDISALQNLTNLRELYLNEDNISDI----SP--LANLTKMYSLNLGANHNLSDLSP-----LSN--- 153 (347)
T ss_dssp TCCEEECCSSCC-CCCGGGTTCTTCSEEECTTSCCCCC----GG--GTTCTTCCEEECTTCTTCCCCGG-----GTT---
T ss_pred cCCEEEccCCcc-cCchHHcCCCcCCEEECcCCcccCc----hh--hccCCceeEEECCCCCCcccccc-----hhh---
Confidence 466666654211 1122233445677777776633211 11 24556777777777743322111 111
Q ss_pred ccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcc
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l 334 (507)
...++.|.++.+.+.+. + .+..+++|++|++++|.+.+... + ...++|+.|++++|.+++..
T Consensus 154 -l~~L~~L~l~~~~~~~~-----~-----~~~~l~~L~~L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 154 -MTGLNYLTVTESKVKDV-----T-----PIANLTDLYSLSLNYNQIEDISP------L-ASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp -CTTCCEEECCSSCCCCC-----G-----GGGGCTTCSEEECTTSCCCCCGG------G-GGCTTCCEEECCSSCCCCCG
T ss_pred -CCCCcEEEecCCCcCCc-----h-----hhccCCCCCEEEccCCccccccc------c-cCCCccceeecccCCCCCCc
Confidence 12355555555443221 1 14556666666666666655432 1 23356666666666665421
Q ss_pred cccccCCchhhcccCCCcCccccccchhHHHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCC
Q 010572 335 SKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRG 413 (507)
Q Consensus 335 ~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i 413 (507)
.+...++|++|.+.++. +. .+...-. ++|++|+|++|.++.. .++....+|++|++++|.+
T Consensus 216 ----------~~~~~~~L~~L~l~~n~-l~-~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 216 ----------PVANMTRLNSLKIGNNK-IT-DLSPLANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp ----------GGGGCTTCCEEECCSSC-CC-CCGGGTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCC
T ss_pred ----------hhhcCCcCCEEEccCCc-cC-CCcchhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCcc
Confidence 12233334444444332 00 0000001 4555555555555442 1233344555555555555
Q ss_pred ChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 414 GVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 414 ~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++. ..+...++|+.|++++|.+.+.+...+. . ..+|+.|+|++|.+
T Consensus 278 ~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~-l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 278 SDI------SVLNNLSQLNSLFLNNNQLGNEDMEVIG----G-LTNLTTLFLSQNHI 323 (347)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCGGGHHHHH----T-CTTCSEEECCSSSC
T ss_pred CCC------hhhcCCCCCCEEECcCCcCCCcChhHhh----c-cccCCEEEccCCcc
Confidence 442 1223334555555555555544433222 1 13455555555554
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.46 E-value=4.6e-14 Score=142.52 Aligned_cols=228 Identities=13% Similarity=0.080 Sum_probs=119.2
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
...|++|+++++.... +.+..+.++++|++|+|++|.++.- ... . ...++.|.++.+.+..
T Consensus 75 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~---------~-~~~L~~L~l~~n~l~~---- 135 (330)
T 1xku_A 75 LKNLHTLILINNKISK----ISPGAFAPLVKLERLYLSKNQLKEL-PEK---------M-PKTLQELRVHENEITK---- 135 (330)
T ss_dssp CTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCSBC-CSS---------C-CTTCCEEECCSSCCCB----
T ss_pred CCCCCEEECCCCcCCe----eCHHHhcCCCCCCEEECCCCcCCcc-Chh---------h-cccccEEECCCCcccc----
Confidence 4456666666553211 1111123455666666666665421 000 0 1235555555544321
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
+. ...+..+++|++|+|++|.+...+... ..+ ...++|++|+|++|.++..-. .+ ..+|++|
T Consensus 136 -~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~-~~l~~L~~L~l~~n~l~~l~~---------~~--~~~L~~L 197 (330)
T 1xku_A 136 -VR---KSVFNGLNQMIVVELGTNPLKSSGIEN--GAF-QGMKKLSYIRIADTNITTIPQ---------GL--PPSLTEL 197 (330)
T ss_dssp -BC---HHHHTTCTTCCEEECCSSCCCGGGBCT--TGG-GGCTTCCEEECCSSCCCSCCS---------SC--CTTCSEE
T ss_pred -cC---HhHhcCCccccEEECCCCcCCccCcCh--hhc-cCCCCcCEEECCCCccccCCc---------cc--cccCCEE
Confidence 11 234566677777777777776543211 122 334677777777777764211 11 1345555
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
.+.++. +....+..+. .+|++|+|++|.++..... .+....+|++|+|++|.++. +...+...++|++
T Consensus 198 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~ 267 (330)
T 1xku_A 198 HLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQV 267 (330)
T ss_dssp ECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCE
T ss_pred ECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChh----hccCCCCCCEEECCCCcCcc-----CChhhccCCCcCE
Confidence 555543 1111112222 6778888888877654321 23445678888888887762 2223445567888
Q ss_pred EEccCCCCChhHHHHHHHHHhc-CCCCccEEEecCCCC
Q 010572 434 VNAGYNLMPLESLTIICSALKV-AKGHLQRLDLTGNNW 470 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~-~~~~L~~LdL~~N~~ 470 (507)
|++++|.|+.-+...++..... ....|+.|++++|.+
T Consensus 268 L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp EECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred EECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 8888888876554333321111 124677788888876
No 32
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=2.6e-12 Score=139.14 Aligned_cols=245 Identities=13% Similarity=0.076 Sum_probs=162.6
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccc-cCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFI-ENCP 274 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~l-e~~~ 274 (507)
...|++|+++++.... .. ...++.++++|++|++++| +++.++..+...+. .++.|.+..+.-. +..+
T Consensus 288 ~~~L~~L~L~~~~l~~--~~-l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~-------~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQS--YD-LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK-------DLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp HTTCCEEECTTCCCCH--HH-HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT-------TCCEEEEECSCTTCSSCS
T ss_pred hCCCCEEEccCCCCCH--HH-HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC-------CCCEEEEecCcccccccC
Confidence 3578888887765321 11 2233456788899999888 77777766655432 3666765321100 0112
Q ss_pred CcchH-HHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECc--C----CCCCCcccccccCCchhhcc
Q 010572 275 SSVVV-ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLS--G----NSIGGWLSKYDRSGPLFSLG 347 (507)
Q Consensus 275 ~~l~~-~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS--~----N~L~~~l~~~~~~~l~~~L~ 347 (507)
..++. ++......+++|++|+++.|.+++.++..++.. .++|++|+|+ + |.+++.... ..+...+.
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~l~~~~~~---~~~~~l~~ 429 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN----RPNMTRFRLCIIEPKAPDYLTLEPLD---IGFGAIVE 429 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH----CTTCCEEEEEESSTTCCCTTTCCCTH---HHHHHHHH
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh----CCCcceeEeecccCCCcccccCCchh---hHHHHHHh
Confidence 22333 344444568999999999999999988776543 4789999999 4 455521000 00111345
Q ss_pred cCCCcCccccccch--hHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhC
Q 010572 348 AGKSLQSLRLLNLS--HIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLM 425 (507)
Q Consensus 348 ~~~~L~~L~ll~l~--~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L 425 (507)
.+++|+.|.+.+.- .+...++.. .++|++|+|++|.+++.|...++.. ..+|++|+|++|.+++.+...+...
T Consensus 430 ~~~~L~~L~L~~~l~~~~~~~l~~~-~~~L~~L~L~~~~i~~~~~~~l~~~---~~~L~~L~L~~n~~~~~~~~~~~~~- 504 (594)
T 2p1m_B 430 HCKDLRRLSLSGLLTDKVFEYIGTY-AKKMEMLSVAFAGDSDLGMHHVLSG---CDSLRKLEIRDCPFGDKALLANASK- 504 (594)
T ss_dssp HCTTCCEEECCSSCCHHHHHHHHHH-CTTCCEEEEESCCSSHHHHHHHHHH---CTTCCEEEEESCSCCHHHHHHTGGG-
T ss_pred hCCCccEEeecCcccHHHHHHHHHh-chhccEeeccCCCCcHHHHHHHHhc---CCCcCEEECcCCCCcHHHHHHHHHh-
Confidence 56677777775521 344444441 2789999999999999998887655 5679999999999988887765543
Q ss_pred CCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCC
Q 010572 426 PLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 426 ~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~ 469 (507)
.++|+.|++++|.++++|++.++..+ ++|+...+..+.
T Consensus 505 --l~~L~~L~l~~~~~~~~~~~~l~~~l----p~l~i~~~~~~~ 542 (594)
T 2p1m_B 505 --LETMRSLWMSSCSVSFGACKLLGQKM----PKLNVEVIDERG 542 (594)
T ss_dssp --GGGSSEEEEESSCCBHHHHHHHHHHC----TTEEEEEECSSS
T ss_pred --CCCCCEEeeeCCCCCHHHHHHHHHhC----CCCEEEEecCCC
Confidence 37899999999999999999887655 356666666554
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.44 E-value=2e-12 Score=130.92 Aligned_cols=148 Identities=20% Similarity=0.128 Sum_probs=66.7
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch-hH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HI 363 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~ 363 (507)
+..+++|++|++++|.+.+... + ...++|++|+|++|.+++.. .+...++|+.|.+.++. ..
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~------~-~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTP------I-ANLTDLYSLSLNYNQIEDIS----------PLASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG------G-GGCTTCSEEECTTSCCCCCG----------GGGGCTTCCEEECCSSCCCC
T ss_pred hhhCCCCcEEEecCCCcCCchh------h-ccCCCCCEEEccCCcccccc----------cccCCCccceeecccCCCCC
Confidence 4455555555555555554433 1 22355555555555555311 12233334444433332 00
Q ss_pred HHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 364 AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
...+.. .++|++|+|++|.++.... +....+|++|+|++|.++.. ..+...++|+.|++++|.+++
T Consensus 214 ~~~~~~--~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 214 ITPVAN--MTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CGGGGG--CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCC
T ss_pred Cchhhc--CCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCC
Confidence 000000 1455555555555554332 33344555555555555442 123344555555555555554
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 444 ESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 444 ~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.. ++... .+|+.|+|++|.+
T Consensus 280 ~~------~~~~l-~~L~~L~L~~n~l 299 (347)
T 4fmz_A 280 IS------VLNNL-SQLNSLFLNNNQL 299 (347)
T ss_dssp CG------GGGGC-TTCSEEECCSSCC
T ss_pred Ch------hhcCC-CCCCEEECcCCcC
Confidence 21 22222 3455555555553
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.43 E-value=1.2e-13 Score=136.56 Aligned_cols=218 Identities=15% Similarity=0.095 Sum_probs=126.2
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccc-cccCCCC
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISS-FIENCPS 275 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~-~le~~~~ 275 (507)
..+++|+++++.... +.+..+.++++|++|+|++|.+++.....+ .. ...++.|+++.+. +.+..
T Consensus 32 ~~l~~L~l~~n~i~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~----l~~L~~L~l~~n~~l~~~~-- 97 (285)
T 1ozn_A 32 AASQRIFLHGNRISH----VPAASFRACRNLTILWLHSNVLARIDAAAF----TG----LALLEQLDLSDNAQLRSVD-- 97 (285)
T ss_dssp TTCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTT----TT----CTTCCEEECCSCTTCCCCC--
T ss_pred CCceEEEeeCCcCCc----cCHHHcccCCCCCEEECCCCccceeCHhhc----CC----ccCCCEEeCCCCCCccccC--
Confidence 467888887764321 111123456788888888887654322111 00 1235555555443 21110
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
...+..+++|++|+|++|.+....... ....++|++|+|++|.|++...
T Consensus 98 ------~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~-------------------- 146 (285)
T 1ozn_A 98 ------PATFHGLGRLHTLHLDRCGLQELGPGL-----FRGLAALQYLYLQDNALQALPD-------------------- 146 (285)
T ss_dssp ------TTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------------------
T ss_pred ------HHHhcCCcCCCEEECCCCcCCEECHhH-----hhCCcCCCEEECCCCcccccCH--------------------
Confidence 123445566666666666665543321 1234566666666666653211
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
..+. .+|++|+|++|.++.... .++....+|++|+|++|.++...+. .+...++|+.
T Consensus 147 -------------~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~ 205 (285)
T 1ozn_A 147 -------------DTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHPH----AFRDLGRLMT 205 (285)
T ss_dssp -------------TTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCE
T ss_pred -------------hHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECCCCcccccCHh----HccCcccccE
Confidence 1111 578899999999875432 2344567899999999998876443 3445578999
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
|++++|.|+..... ++.. ..+|+.|+|++|.+.-.........-++.
T Consensus 206 L~l~~n~l~~~~~~----~~~~-l~~L~~L~l~~N~~~c~~~~~~~~~~l~~ 252 (285)
T 1ozn_A 206 LYLFANNLSALPTE----ALAP-LRALQYLRLNDNPWVCDCRARPLWAWLQK 252 (285)
T ss_dssp EECCSSCCSCCCHH----HHTT-CTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred eeCCCCcCCcCCHH----Hccc-CcccCEEeccCCCccCCCCcHHHHHHHHh
Confidence 99999999865432 3333 36799999999998333333334343333
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.43 E-value=3.4e-15 Score=151.74 Aligned_cols=274 Identities=11% Similarity=0.012 Sum_probs=146.9
Q ss_pred hhhhhhhhhccCCcccccchhhhhccc---hhhcccccccccccccceecc--------cCceeEEEEeccCcchhhhh-
Q 010572 124 AELVVLPSFRGLISDINISDTILNYIG---YEQQMNHLACDYSKLSYHCQQ--------FGHYARCLRLQNALCVEETC- 191 (507)
Q Consensus 124 ~e~~~~~~~~~~l~di~~~~~~l~~~~---~~~~~~c~~~~l~~l~~~c~~--------~~~~v~~L~L~~~l~~~~~~- 191 (507)
.|++++..|+.++.. .+.+.+..|. .....+|.| -++.|.. ...+|+.|+|...--. .+.
T Consensus 27 ~~~~aLl~~k~~~~~--~~~~~~~~w~~~~~~~~~~~~~-----~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 27 PYHDVLSQWQRHYNA--DRNRWHSAWRQANSNNPQIETR-----TGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp CHHHHHHHHHHHHHH--CCTTHHHHHHHHTTTCTTSCCS-----HHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred hHHHHHHHHHHhccC--Cchhhhhhhccccccccccccc-----CCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 677788888877632 1556777884 223467777 2455532 1235777777642211 111
Q ss_pred hhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceecccccccc
Q 010572 192 QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIE 271 (507)
Q Consensus 192 ~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le 271 (507)
.+....+|++|+++++... .+ +..++++++|++|+|++|.++ ..+..+ .. ...++.|+++.|.+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~l----p~~~~~l~~L~~L~Ls~n~l~-~lp~~l----~~----l~~L~~L~L~~n~~~~ 164 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-EL----PDTMQQFAGLETLTLARNPLR-ALPASI----AS----LNRLRELSIRACPELT 164 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CC----CSCGGGGTTCSEEEEESCCCC-CCCGGG----GG----CTTCCEEEEEEETTCC
T ss_pred hhhhCCCCCEEECCCCCcc-ch----hHHHhccCCCCEEECCCCccc-cCcHHH----hc----CcCCCEEECCCCCCcc
Confidence 2334556777777766432 11 111234567777777777665 222111 10 1235556655544322
Q ss_pred CCCCcchH-HHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCC
Q 010572 272 NCPSSVVV-ELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGK 350 (507)
Q Consensus 272 ~~~~~l~~-~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~ 350 (507)
.-...+.. .+...+..+++|++|+|++|+++.- .. .+ ...++|++|+|++|.|++... .+...
T Consensus 165 ~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~----~l-~~l~~L~~L~L~~N~l~~l~~---------~l~~l- 228 (328)
T 4fcg_A 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PA----SI-ANLQNLKSLKIRNSPLSALGP---------AIHHL- 228 (328)
T ss_dssp CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CG----GG-GGCTTCCEEEEESSCCCCCCG---------GGGGC-
T ss_pred ccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hH----hh-cCCCCCCEEEccCCCCCcCch---------hhccC-
Confidence 11100000 0011133466667777777666521 11 12 234666677777666664111 11111
Q ss_pred CcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCC
Q 010572 351 SLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPE 430 (507)
Q Consensus 351 ~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~ 430 (507)
++|++|+|++|.+... +...+....+|++|+|++|.+....+.. +...++
T Consensus 229 ----------------------~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~~p~~----~~~l~~ 278 (328)
T 4fcg_A 229 ----------------------PKLEELDLRGCTALRN----YPPIFGGRAPLKRLILKDCSNLLTLPLD----IHRLTQ 278 (328)
T ss_dssp ----------------------TTCCEEECTTCTTCCB----CCCCTTCCCCCCEEECTTCTTCCBCCTT----GGGCTT
T ss_pred ----------------------CCCCEEECcCCcchhh----hHHHhcCCCCCCEEECCCCCchhhcchh----hhcCCC
Confidence 5688888888877542 2233445677999999998876554433 334578
Q ss_pred ccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 431 LVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 431 L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+.|+|++|.+...-.. .+.. -.+|+.+++..|.+
T Consensus 279 L~~L~L~~n~~~~~iP~----~l~~-L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 279 LEKLDLRGCVNLSRLPS----LIAQ-LPANCIILVPPHLQ 313 (328)
T ss_dssp CCEEECTTCTTCCCCCG----GGGG-SCTTCEEECCGGGS
T ss_pred CCEEeCCCCCchhhccH----HHhh-ccCceEEeCCHHHH
Confidence 99999999887543222 2333 25689999888775
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.42 E-value=3.8e-14 Score=144.60 Aligned_cols=235 Identities=15% Similarity=0.050 Sum_probs=158.0
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..+++|+++++.... +....+.++++|++|+|++|.+++.....+ . ....++.|+++.+.+.+
T Consensus 52 ~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~----~l~~L~~L~Ls~n~l~~----- 114 (353)
T 2z80_A 52 EAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNGINTIEEDSF----S----SLGSLEHLDLSYNYLSN----- 114 (353)
T ss_dssp TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECTTTT----T----TCTTCCEEECCSSCCSS-----
T ss_pred ccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCccCccCHhhc----C----CCCCCCEEECCCCcCCc-----
Confidence 378999998874321 111123567899999999999875332211 1 12357888888776532
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCC-CCCcccccccCCchhhcccCCCcCcc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~-L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
++ ..++..+++|++|+|++|++...... ......++|++|+|++|. ++..... .+...++|++|
T Consensus 115 ~~---~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~--------~~~~l~~L~~L 179 (353)
T 2z80_A 115 LS---SSWFKPLSSLTFLNLLGNPYKTLGET----SLFSHLTKLQILRVGNMDTFTKIQRK--------DFAGLTFLEEL 179 (353)
T ss_dssp CC---HHHHTTCTTCSEEECTTCCCSSSCSS----CSCTTCTTCCEEEEEESSSCCEECTT--------TTTTCCEEEEE
T ss_pred CC---HhHhCCCccCCEEECCCCCCcccCch----hhhccCCCCcEEECCCCccccccCHH--------HccCCCCCCEE
Confidence 22 23568889999999999999854320 112456899999999995 5542221 45555666666
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
.+.++. ..+..+..+. .+|++|+|++|.++...... .....+|++|+|++|.++......+... ...+.++.
T Consensus 180 ~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~~-~~~~~l~~ 253 (353)
T 2z80_A 180 EIDASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIF----VDVTSSVECLELRDTDLDTFHFSELSTG-ETNSLIKK 253 (353)
T ss_dssp EEEETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHH----HHHTTTEEEEEEESCBCTTCCCC-------CCCCCCE
T ss_pred ECCCCC-cCccCHHHHhccccCCeecCCCCccccchhhh----hhhcccccEEECCCCccccccccccccc-cccchhhc
Confidence 665554 1111223333 78999999999997654222 2235689999999999887544433322 23457999
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++|+.|.+++.+...+.+.+... .+|+.|+|++|.+
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l-~~L~~L~Ls~N~l 289 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQI-SGLLELEFSRNQL 289 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTC-TTCCEEECCSSCC
T ss_pred cccccccccCcchhhhHHHHhcc-cCCCEEECCCCCC
Confidence 99999999999999998888765 6899999999998
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.42 E-value=1.1e-13 Score=139.83 Aligned_cols=224 Identities=15% Similarity=0.121 Sum_probs=148.3
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..+++|+++++.... +.+..+.++++|++|+|++|.+++..+..+ . ....++.|+++.+.+.+.
T Consensus 52 ~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~----~l~~L~~L~Ls~n~l~~l---- 115 (330)
T 1xku_A 52 PDTALLDLQNNKITE----IKDGDFKNLKNLHTLILINNKISKISPGAF----A----PLVKLERLYLSKNQLKEL---- 115 (330)
T ss_dssp TTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCCCBCTTTT----T----TCTTCCEEECCSSCCSBC----
T ss_pred CCCeEEECCCCcCCE----eChhhhccCCCCCEEECCCCcCCeeCHHHh----c----CCCCCCEEECCCCcCCcc----
Confidence 467889988774321 111123567899999999998875433222 1 113578888877765432
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+.. ..++|++|++++|.+.......+ ...++|++|+|++|.++.... ....+...++|+.|.
T Consensus 116 -~~~------~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~------~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 116 -PEK------MPKTLQELRVHENEITKVRKSVF-----NGLNQMIVVELGTNPLKSSGI------ENGAFQGMKKLSYIR 177 (330)
T ss_dssp -CSS------CCTTCCEEECCSSCCCBBCHHHH-----TTCTTCCEEECCSSCCCGGGB------CTTGGGGCTTCCEEE
T ss_pred -Chh------hcccccEEECCCCcccccCHhHh-----cCCccccEEECCCCcCCccCc------ChhhccCCCCcCEEE
Confidence 211 12689999999999988766433 346899999999999974211 011566667777777
Q ss_pred cccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEc
Q 010572 357 LLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNA 436 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~L 436 (507)
+.++.- ..++..+..+|++|+|++|.++.... ..+....+|++|+|++|.++......+ ...++|++|+|
T Consensus 178 l~~n~l--~~l~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L 247 (330)
T 1xku_A 178 IADTNI--TTIPQGLPPSLTELHLDGNKITKVDA----ASLKGLNNLAKLGLSFNSISAVDNGSL----ANTPHLRELHL 247 (330)
T ss_dssp CCSSCC--CSCCSSCCTTCSEEECTTSCCCEECT----GGGTTCTTCCEEECCSSCCCEECTTTG----GGSTTCCEEEC
T ss_pred CCCCcc--ccCCccccccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCceeChhhc----cCCCCCCEEEC
Confidence 766640 11222233789999999999986543 234556789999999999887544333 34578999999
Q ss_pred cCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 437 GYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 437 s~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++|.|..- ...+.. ..+|+.|+|++|.+
T Consensus 248 ~~N~l~~l-----p~~l~~-l~~L~~L~l~~N~i 275 (330)
T 1xku_A 248 NNNKLVKV-----PGGLAD-HKYIQVVYLHNNNI 275 (330)
T ss_dssp CSSCCSSC-----CTTTTT-CSSCCEEECCSSCC
T ss_pred CCCcCccC-----Chhhcc-CCCcCEEECCCCcC
Confidence 99999831 123333 36799999999987
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=9.8e-15 Score=159.09 Aligned_cols=126 Identities=15% Similarity=0.170 Sum_probs=72.8
Q ss_pred cccCCCcCccccccchhHHHHH--Hhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHH
Q 010572 346 LGAGKSLQSLRLLNLSHIAASL--GKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFL 421 (507)
Q Consensus 346 L~~~~~L~~L~ll~l~~~~~~L--~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L 421 (507)
+...++|+.|.+.++.-....+ ...+. ++|++|+|++|.++.... .++....+|++|+|++|.++..++..+
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ----HAFTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh----hhhccccCCCEEECCCCccCcCChhHh
Confidence 4445555555555554110001 11222 678888888888775432 234456678888888888887665444
Q ss_pred HhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 422 SKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 422 ~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
...++| .|++++|.++......+. .+ .+|+.|+|++|++.-.......+.-+..
T Consensus 521 ----~~l~~L-~L~L~~N~l~~~~~~~~~-~l----~~L~~L~l~~N~~~c~c~~~~~~~w~~~ 574 (606)
T 3t6q_A 521 ----SHLKGI-YLNLASNHISIILPSLLP-IL----SQQRTINLRQNPLDCTCSNIYFLEWYKE 574 (606)
T ss_dssp ----TTCCSC-EEECCSSCCCCCCGGGHH-HH----HTSSEEECTTCCEECSGGGHHHHHHHHH
T ss_pred ----Cccccc-EEECcCCcccccCHhhcc-cC----CCCCEEeCCCCCccccCCcHHHHHHHHh
Confidence 344678 888888888743322221 12 3689999999998323333333333333
No 39
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=3.9e-14 Score=142.81 Aligned_cols=213 Identities=19% Similarity=0.153 Sum_probs=128.6
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
.+|++|+++++.... +.+..+.++++|++|+|++|.+++... +.. ...++.|+++.+.+.+
T Consensus 34 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~----l~~L~~L~Ls~n~l~~----- 94 (317)
T 3o53_A 34 WNVKELDLSGNPLSQ----ISAADLAPFTKLELLNLSSNVLYETLD------LES----LSTLRTLDLNNNYVQE----- 94 (317)
T ss_dssp GGCSEEECTTSCCCC----CCHHHHTTCTTCCEEECTTSCCEEEEE------ETT----CTTCCEEECCSSEEEE-----
T ss_pred CCCCEEECcCCccCc----CCHHHhhCCCcCCEEECCCCcCCcchh------hhh----cCCCCEEECcCCcccc-----
Confidence 367788887764322 122223466788888888887764321 111 1346677776665432
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+...++|++|++++|.+.+... ...++|++|+|++|.|++..+. .+...++|+.|.
T Consensus 95 --------l~~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~N~l~~~~~~--------~~~~l~~L~~L~ 150 (317)
T 3o53_A 95 --------LLVGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITMLRDL--------DEGCRSRVQYLD 150 (317)
T ss_dssp --------EEECTTCCEEECCSSCCSEEEE--------CCCSSCEEEECCSSCCCSGGGB--------CTGGGSSEEEEE
T ss_pred --------ccCCCCcCEEECCCCccCCcCc--------cccCCCCEEECCCCCCCCccch--------hhhccCCCCEEE
Confidence 1234778888888888876543 1246788888888888753221 334445566666
Q ss_pred cccchhHHHHHHhhh--c-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 357 LLNLSHIAASLGKFF--G-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 357 ll~l~~~~~~L~~~l--~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
+.++. +.......+ . .+|++|+|++|.|+... ......+|++|+|++|.++.-... +...++|+.
T Consensus 151 Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~l~~~-----~~~l~~L~~ 218 (317)
T 3o53_A 151 LKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTW 218 (317)
T ss_dssp CTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEECGG-----GGGGTTCSE
T ss_pred CCCCC-CCcccHHHHhhccCcCCEEECCCCcCcccc------cccccccCCEEECCCCcCCcchhh-----hcccCcccE
Confidence 55554 000001111 1 67888999988887641 122356788999999988754322 233467899
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+|++|.|+. +...+.. ..+|+.|+|++|.+
T Consensus 219 L~L~~N~l~~-----l~~~~~~-l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 219 ISLRNNKLVL-----IEKALRF-SQNLEHFDLRGNGF 249 (317)
T ss_dssp EECTTSCCCE-----ECTTCCC-CTTCCEEECTTCCC
T ss_pred EECcCCcccc-----hhhHhhc-CCCCCEEEccCCCc
Confidence 9999998874 1123333 35788999999887
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.41 E-value=8.2e-13 Score=141.97 Aligned_cols=135 Identities=15% Similarity=0.102 Sum_probs=73.9
Q ss_pred ceeEEEEeccCcchhhh-hhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccC
Q 010572 174 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~~-~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~ 252 (507)
..++.|+|...--.... ..+....+|++|+++++.... +.+..+.++++|++|+|++|.+++.....+ ..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~---- 96 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSSSWF-GP---- 96 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCHHHH-TT----
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCHHHh-cc----
Confidence 35777777642211111 123345678888887764321 111123456788888888888776544433 11
Q ss_pred CcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC-CCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 253 ~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~-L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
...++.|+++.+.+..... ...+..+++|++|+|++|. ++...... + ...++|++|+|++|.++
T Consensus 97 ---l~~L~~L~Ls~n~l~~~~~-------~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~-~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 97 ---LSSLKYLNLMGNPYQTLGV-------TSLFPNLTNLQTLRIGNVETFSEIRRID----F-AGLTSLNELEIKALSLR 161 (549)
T ss_dssp ---CTTCCEEECTTCCCSSSCS-------SCSCTTCTTCCEEEEEESSSCCEECTTT----T-TTCCEEEEEEEEETTCC
T ss_pred ---CCCCcEEECCCCcccccch-------hhhhhccCCccEEECCCCccccccCHhh----h-hcccccCeeeccCCccc
Confidence 1246777777665432111 1234566777777777777 33322211 1 33577777777777777
Q ss_pred C
Q 010572 332 G 332 (507)
Q Consensus 332 ~ 332 (507)
+
T Consensus 162 ~ 162 (549)
T 2z81_A 162 N 162 (549)
T ss_dssp E
T ss_pred c
Confidence 4
No 41
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=137.46 Aligned_cols=240 Identities=14% Similarity=0.071 Sum_probs=149.6
Q ss_pred ccCCcCeeecccccC-hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCC
Q 010572 195 RESKLQSLVLRWIRF-EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 273 (507)
Q Consensus 195 ~~~~L~~L~Ls~~~~-~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~ 273 (507)
....++.+.+++... +..+..+...+. ..+|++|+|++|.+++..+..++. .....++.|+++.+.+....
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~------~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLA--YSRLKELTLEDLKITGTMPPLPLE------ATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHH--HSCCCEEEEESCCCBSCCCCCSSS------CCCBCCSSCEEESCCCSSTT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcc--cCceeEEEeeCCEeccchhhhhhh------ccCCCCCEEEeecccccchh
Confidence 344567787776543 344444444432 256999999999988655433211 01245788888877754311
Q ss_pred CCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcC
Q 010572 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ 353 (507)
Q Consensus 274 ~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~ 353 (507)
. .++ ...+..+++|++|+|++|.+....... ....++|++|+|++|.+.+..... ....++..++|+
T Consensus 134 ~-~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~~~~l~~L~ 200 (310)
T 4glp_A 134 S-WLA---ELQQWLKPGLKVLSIAQAHSPAFSCEQ-----VRAFPALTSLDLSDNPGLGERGLM----AALCPHKFPAIQ 200 (310)
T ss_dssp S-SHH---HHHTTBCSCCCEEEEECCSSCCCCTTS-----CCCCTTCCEEECCSCTTCHHHHHH----TTSCTTSSCCCC
T ss_pred h-hhH---HHHhhhccCCCEEEeeCCCcchhhHHH-----hccCCCCCEEECCCCCCccchhhh----HHHhhhcCCCCC
Confidence 1 011 123457899999999999997755432 245689999999999987421100 001234556677
Q ss_pred ccccccch-hHHHHHHhhh-c--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCC
Q 010572 354 SLRLLNLS-HIAASLGKFF-G--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAP 429 (507)
Q Consensus 354 ~L~ll~l~-~~~~~L~~~l-~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~ 429 (507)
+|.+.++. .....++..+ + .+|++|+|++|.|+..+...+.. +....+|++|+|++|.++. . ...+ .+
T Consensus 201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~-~~~~~~L~~L~Ls~N~l~~-l----p~~~--~~ 272 (310)
T 4glp_A 201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR-CMWSSALNSLNLSFAGLEQ-V----PKGL--PA 272 (310)
T ss_dssp SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS-CCCCTTCCCEECCSSCCCS-C----CSCC--CS
T ss_pred EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh-ccCcCcCCEEECCCCCCCc-h----hhhh--cC
Confidence 77777665 1112222222 2 88999999999998653111111 1112589999999999983 2 1222 26
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 430 ELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 430 ~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+|++|+|++|.|..-. .+. ...+|+.|+|++|++
T Consensus 273 ~L~~L~Ls~N~l~~~~------~~~-~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 273 KLRVLDLSSNRLNRAP------QPD-ELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCEECCSCCCCSCC------CTT-SCCCCSCEECSSTTT
T ss_pred CCCEEECCCCcCCCCc------hhh-hCCCccEEECcCCCC
Confidence 8999999999998521 122 236899999999997
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=4.5e-14 Score=151.33 Aligned_cols=148 Identities=20% Similarity=0.156 Sum_probs=76.8
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
++|++|+|++|.+.+... ...++|++|+|++|.|++..+. .++..++|+.|.+.+|. +.+..+
T Consensus 99 ~~L~~L~L~~N~l~~~~~--------~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~Ls~N~-l~~~~~ 161 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITMLRDL--------DEGCRSRVQYLDLKLNE-IDTVNF 161 (487)
T ss_dssp TTCCEEECCSSCCCCEEE--------CCCSSCEEEECCSSCCCSGGGB--------CGGGGSSEEEEECTTSC-CCEEEG
T ss_pred CCcCEEECcCCcCCCCCc--------cccCCCCEEECCCCCCCCCCch--------hhcCCCCCCEEECCCCC-CCCcCh
Confidence 556666666666655432 1235566666666666543221 23333444444444443 000011
Q ss_pred hhh--c-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhH
Q 010572 369 KFF--G-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLES 445 (507)
Q Consensus 369 ~~l--~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g 445 (507)
..+ . ++|++|+|++|.|+... ......+|++|+|++|.++..... +...++|+.|+|++|.|..
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~-- 228 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRNNKLVL-- 228 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEECGG-----GGGGTTCSEEECTTSCCCE--
T ss_pred HHHhhhCCcccEEecCCCcccccc------ccccCCCCCEEECCCCCCCCCCHh-----HcCCCCccEEEecCCcCcc--
Confidence 111 1 56777777777776531 122345677777777777653322 2233567777777777763
Q ss_pred HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 446 LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 446 ~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+...+.. ..+|+.|+|++|.+
T Consensus 229 ---lp~~l~~-l~~L~~L~l~~N~l 249 (487)
T 3oja_A 229 ---IEKALRF-SQNLEHFDLRGNGF 249 (487)
T ss_dssp ---ECTTCCC-CTTCCEEECTTCCB
T ss_pred ---cchhhcc-CCCCCEEEcCCCCC
Confidence 1112222 24677777777775
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.39 E-value=4.6e-14 Score=153.80 Aligned_cols=207 Identities=17% Similarity=0.125 Sum_probs=132.2
Q ss_pred CCCCccEEEeecCCCChhH--HHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC
Q 010572 223 NSETLASLEFLHCKLSPSF--VEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300 (507)
Q Consensus 223 ~~~~L~~LdLs~~~ls~~~--~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~ 300 (507)
.+++|++|++++|.+++.. ...+ .. ...++.|+++.+.+... ...+..+++|++|+|++|.
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~-~~-------~~~L~~L~L~~n~l~~~---------~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSD-LG-------TNSLRHLDLSFNGAIIM---------SANFMGLEELQHLDFQHST 410 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHH-HC-------CSCCCEEECCSCSEEEE---------CCCCTTCTTCCEEECTTSE
T ss_pred cCCCCCEEECcCCccCCCcchhhhh-cc-------CCcccEeECCCCccccc---------hhhccCCCCCCeeECCCCc
Confidence 4566777777776665331 1111 11 12356666665543221 1234567788888888888
Q ss_pred CCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEE
Q 010572 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVL 378 (507)
Q Consensus 301 L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L 378 (507)
+.+..... . ....++|++|+|++|.+++..+. .+...++|+.|.+.++.-....++..+. ++|++|
T Consensus 411 l~~~~~~~---~-~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 411 LKRVTEFS---A-FLSLEKLLYLDISYTNTKIDFDG--------IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp EESTTTTT---T-TTTCTTCCEEECTTSCCEECCTT--------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred cCCccChh---h-hhccccCCEEECcCCCCCccchh--------hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 76654311 1 23457888888888888764432 5566677777777776511112334444 889999
Q ss_pred EeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCC
Q 010572 379 NIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKG 458 (507)
Q Consensus 379 ~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~ 458 (507)
+|++|.++.... ..+....+|++|+|++|.++...+. .+...++|+.|++++|.|+.-. ..+.....
T Consensus 479 ~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~p-----~~~~~l~~ 545 (606)
T 3vq2_A 479 DLSKCQLEQISW----GVFDTLHRLQLLNMSHNNLLFLDSS----HYNQLYSLSTLDCSFNRIETSK-----GILQHFPK 545 (606)
T ss_dssp ECTTSCCCEECT----TTTTTCTTCCEEECCSSCCSCEEGG----GTTTCTTCCEEECTTSCCCCEE-----SCGGGSCT
T ss_pred ECCCCcCCccCh----hhhcccccCCEEECCCCcCCCcCHH----HccCCCcCCEEECCCCcCcccC-----HhHhhhcc
Confidence 999999986432 3345567899999999999876543 3445578999999999998422 11333323
Q ss_pred CccEEEecCCCCC
Q 010572 459 HLQRLDLTGNNWE 471 (507)
Q Consensus 459 ~L~~LdL~~N~~~ 471 (507)
+|+.|++++|++.
T Consensus 546 ~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 546 SLAFFNLTNNSVA 558 (606)
T ss_dssp TCCEEECCSCCCC
T ss_pred cCcEEEccCCCcc
Confidence 6999999999983
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=4e-14 Score=150.06 Aligned_cols=251 Identities=17% Similarity=0.100 Sum_probs=154.7
Q ss_pred ceeEEEEeccCcchhh-hhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccC
Q 010572 174 HYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~-~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~ 252 (507)
..++.|+|....-... ...+....+|++|+|+++.... +.+..+.++++|++|+|++|.++.-.... +.
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~-- 101 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA----VEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FT-- 101 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCSCCTTS----ST--
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE----eChhhhhCCccCCEEECCCCcCCccCccc----cc--
Confidence 3577787764221111 1133445678999998774321 11122356788999999998876422110 10
Q ss_pred CcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 253 ~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
....++.|+++.+.+... ....+..+++|++|+|++|.+...+... +...++|++|+|++|.|++
T Consensus 102 --~l~~L~~L~Ls~n~i~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 102 --GLSNLTKLDISENKIVIL--------LDYMFQDLYNLKSLEVGDNDLVYISHRA-----FSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp --TCTTCCEEECTTSCCCEE--------CTTTTTTCTTCCEEEECCTTCCEECTTS-----STTCTTCCEEEEESCCCSS
T ss_pred --CCCCCCEEECCCCccccC--------ChhHccccccCCEEECCCCccceeChhh-----ccCCCCCCEEECCCCcCcc
Confidence 123577787777665321 1234577889999999999998765432 2346899999999999985
Q ss_pred cccccccCCchhhcccCCCcCccccccch-----------------------hHHHHHHhh-hc-CCCcEEEeccCCCCc
Q 010572 333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLS-----------------------HIAASLGKF-FG-TSVQVLNIGAIGLGS 387 (507)
Q Consensus 333 ~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-----------------------~~~~~L~~~-l~-~~L~~L~Ls~n~l~~ 387 (507)
.... .+...++|+.|.+.++. .....++.. +. .+|++|+|++|.|+.
T Consensus 167 ~~~~--------~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 167 IPTE--------ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp CCHH--------HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred cChh--------HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 3221 34444455555544432 000111111 11 478888888888876
Q ss_pred hhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecC
Q 010572 388 SGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTG 467 (507)
Q Consensus 388 ~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~ 467 (507)
.... ++....+|++|+|++|.++.... ..+...++|++|+|++|.+...... ++.. ..+|+.|+|++
T Consensus 239 ~~~~----~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~-l~~L~~L~L~~ 305 (477)
T 2id5_A 239 VPYL----AVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGGQLAVVEPY----AFRG-LNYLRVLNVSG 305 (477)
T ss_dssp CCHH----HHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCSSCCSEECTT----TBTT-CTTCCEEECCS
T ss_pred cCHH----HhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCCCccceECHH----HhcC-cccCCEEECCC
Confidence 5433 34456789999999999876543 2345567899999999999864322 3332 36899999999
Q ss_pred CCC
Q 010572 468 NNW 470 (507)
Q Consensus 468 N~~ 470 (507)
|.+
T Consensus 306 N~l 308 (477)
T 2id5_A 306 NQL 308 (477)
T ss_dssp SCC
T ss_pred CcC
Confidence 988
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.37 E-value=1.1e-13 Score=139.09 Aligned_cols=233 Identities=16% Similarity=0.165 Sum_probs=142.2
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCC-----hhHHHHHHHHhccCCcccccccceecccccccc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLS-----PSFVEGICRSLCSKRKRIHKIENLSIDISSFIE 271 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls-----~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le 271 (507)
..|++|+++++.. .-...+.. .|++|+|++|.++ +.........+.- ..++.|+++.+.+.+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~-------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~ 109 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD-------IIKSLSLKRLTVRAARIPSRILFGALRVLGI-----SGLQELTLENLEVTG 109 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH-------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTT-----SCCCEEEEEEEBCBS
T ss_pred CCceeEeeccccc-ccHHHHHH-------HHhhcccccccccCCCcCHHHHHHHHHhcCc-----CCccEEEccCCcccc
Confidence 3567777776644 11112211 1555666666553 3322222222221 358888888877543
Q ss_pred CCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCC
Q 010572 272 NCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS 351 (507)
Q Consensus 272 ~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~ 351 (507)
... ..+ ++..+++|++|+|++|.+.+. ...+........++|++|+|++|.|++..+. .++..++
T Consensus 110 ~~~----~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~--------~~~~l~~ 174 (312)
T 1wwl_A 110 TAP----PPL--LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE--------QVRVFPA 174 (312)
T ss_dssp CCC----CCS--SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT--------TCCCCSS
T ss_pred hhH----HHH--HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH--------HhccCCC
Confidence 211 111 136789999999999999887 3323221111238999999999999874432 5666777
Q ss_pred cCccccccch-hHHHHHHhhh--c--CCCcEEEeccCCCCchhHHHHHHh-hcCCCCCCEEeccCCCCChHHHHHHHhhC
Q 010572 352 LQSLRLLNLS-HIAASLGKFF--G--TSVQVLNIGAIGLGSSGFRVLQDG-VTKELKLVNINISKNRGGVETAKFLSKLM 425 (507)
Q Consensus 352 L~~L~ll~l~-~~~~~L~~~l--~--~~L~~L~Ls~n~l~~~G~~~L~~a-L~~n~~L~~LdLs~N~i~~~g~~~L~~~L 425 (507)
|+.|.+.+|. .+...+...+ . ++|++|+|++|.|+..+ .+... .....+|++|+|++|.+++.+.. ...
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~ 249 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAAGA---PSC 249 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCSSCCC---SCC
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCcccch---hhh
Confidence 8888887776 2222232222 3 88999999999998543 22222 23456899999999998774310 122
Q ss_pred CCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 426 PLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 426 ~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
...++|+.|+|++|.|+.- ...+. .+|+.|||++|.+
T Consensus 250 ~~l~~L~~L~Ls~N~l~~i-----p~~~~---~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQV-----PKGLP---AKLSVLDLSYNRL 286 (312)
T ss_dssp CCCTTCCEEECTTSCCSSC-----CSSCC---SEEEEEECCSSCC
T ss_pred hhcCCCCEEECCCCccChh-----hhhcc---CCceEEECCCCCC
Confidence 2346799999999998731 11111 4789999999987
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.37 E-value=2.3e-13 Score=148.19 Aligned_cols=264 Identities=18% Similarity=0.131 Sum_probs=172.4
Q ss_pred eeEEEEeccCcchhhhh-hhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCC
Q 010572 175 YARCLRLQNALCVEETC-QLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~-~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~ 253 (507)
.++.|++....-. ++. .+.....|++|+++++.... +.+..+.++++|++|++++|.+........+..
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~----- 348 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN----LCQISASNFPSLTHLSIKGNTKRLELGTGCLEN----- 348 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB----GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT-----
T ss_pred CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc----CchhhhhccCcCCEEECCCCCcccccchhhhhc-----
Confidence 5888888752211 222 23345689999999885332 222234567899999999998764332211111
Q ss_pred cccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 254 ~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
...++.|+++.+.+.+... ....+..+++|++|+|++|.+.+.....+ ...++|++|+|++|.+++.
T Consensus 349 --l~~L~~L~l~~n~l~~~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 349 --LENLRELDLSHDDIETSDC------CNLQLRNLSHLQSLNLSYNEPLSLKTEAF-----KECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp --CTTCCEEECCSSCCCEEEE------STTTTTTCTTCCEEECCSCSCEEECTTTT-----TTCTTCSEEECTTCCEECC
T ss_pred --cCcCCEEECCCCccccccC------cchhcccCCCCCEEECCCCcCCcCCHHHh-----cCCccCCeEECCCCcCCCc
Confidence 2357788887776533210 02246778999999999999987654322 3458999999999999864
Q ss_pred ccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCC
Q 010572 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKN 411 (507)
Q Consensus 334 l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N 411 (507)
.+. ..+...++|+.|.+.++. .....+..+. ++|++|+|++|.++..... ....+....+|++|+|++|
T Consensus 416 ~~~-------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 416 DAQ-------SPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TTC-------CTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTS
T ss_pred ccc-------hhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCC
Confidence 321 135566677777776664 1112223333 7899999999999752211 1123556778999999999
Q ss_pred CCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC-CCCccHHHHH
Q 010572 412 RGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW-ELQPSHVSML 480 (507)
Q Consensus 412 ~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~-~~~~~~~~~l 480 (507)
.++...+. .+...++|++|+|++|.+...+.. ++.. ...| .|+|++|.+ ++.++....+
T Consensus 487 ~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~-l~~L-~L~L~~N~l~~~~~~~~~~l 546 (606)
T 3t6q_A 487 DLSSIDQH----AFTSLKMMNHVDLSHNRLTSSSIE----ALSH-LKGI-YLNLASNHISIILPSLLPIL 546 (606)
T ss_dssp CCCEECTT----TTTTCTTCCEEECCSSCCCGGGGG----GGTT-CCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred ccCccChh----hhccccCCCEEECCCCccCcCChh----HhCc-cccc-EEECcCCcccccCHhhcccC
Confidence 99876543 344568899999999999976643 3443 3578 999999998 3444444444
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.37 E-value=2.1e-13 Score=143.56 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=147.4
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..++.|+|+++.... +.+..+.++++|++|+|++|.++......+ .. ...++.|+++.+.+.+.
T Consensus 64 ~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~----~~----l~~L~~L~L~~n~l~~~---- 127 (440)
T 3zyj_A 64 TNTRLLNLHENQIQI----IKVNSFKHLRHLEILQLSRNHIRTIEIGAF----NG----LANLNTLELFDNRLTTI---- 127 (440)
T ss_dssp TTCSEEECCSCCCCE----ECTTTTSSCSSCCEEECCSSCCCEECGGGG----TT----CSSCCEEECCSSCCSSC----
T ss_pred CCCcEEEccCCcCCe----eCHHHhhCCCCCCEEECCCCcCCccChhhc----cC----CccCCEEECCCCcCCee----
Confidence 457888888764321 111123467889999999988875332211 11 13477788777665332
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+ ..++..+++|++|+|++|.+....... ....++|++|+|++|+..+.+.. .++....+|+.|.
T Consensus 128 -~---~~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~~-------~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 128 -P---NGAFVYLSKLKELWLRNNPIESIPSYA-----FNRIPSLRRLDLGELKRLSYISE-------GAFEGLSNLRYLN 191 (440)
T ss_dssp -C---TTTSCSCSSCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEECT-------TTTTTCSSCCEEE
T ss_pred -C---HhHhhccccCceeeCCCCcccccCHHH-----hhhCcccCEeCCCCCCCcceeCc-------chhhcccccCeec
Confidence 1 124567889999999999988654422 24568899999998654432211 1455566677777
Q ss_pred cccchhHHHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 357 LLNLSHIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
+.++. + ..++.... .+|++|+|++|.|+.... ..+....+|++|+|++|.++..... ++...++|+.|+
T Consensus 192 L~~n~-l-~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~ 261 (440)
T 3zyj_A 192 LAMCN-L-REIPNLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQVIERN----AFDNLQSLVEIN 261 (440)
T ss_dssp CTTSC-C-SSCCCCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTT----SSTTCTTCCEEE
T ss_pred CCCCc-C-ccccccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCCceeEEChh----hhcCCCCCCEEE
Confidence 66664 0 01222112 789999999999986532 3455667899999999999876443 445568899999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 436 AGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 436 Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|++|.|...... ++. ...+|+.|+|++|.|
T Consensus 262 L~~N~l~~~~~~----~~~-~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 262 LAHNNLTLLPHD----LFT-PLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTSCCCCCCTT----TTS-SCTTCCEEECCSSCE
T ss_pred CCCCCCCccChh----Hhc-cccCCCEEEcCCCCc
Confidence 999999854322 222 236899999999998
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.36 E-value=1.3e-13 Score=145.73 Aligned_cols=228 Identities=14% Similarity=0.058 Sum_probs=148.9
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..+++|+|+++.... +.+..+.++++|++|+|++|.+++.....+ . ....++.|+++.+.+...
T Consensus 75 ~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~----~l~~L~~L~L~~n~l~~~---- 138 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEVGAF----N----GLASLNTLELFDNWLTVI---- 138 (452)
T ss_dssp TTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTT----T----TCTTCCEEECCSSCCSBC----
T ss_pred CCccEEECcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcChhhc----c----CcccCCEEECCCCcCCcc----
Confidence 467888888774321 111223567889999999998875332211 1 123577788777765332
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+ ..++..+++|++|+|++|.+....... ....++|++|+|++|+.-+.+.. ..+....+|+.|.
T Consensus 139 -~---~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~l~~~~~l~~i~~-------~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 139 -P---SGAFEYLSKLRELWLRNNPIESIPSYA-----FNRVPSLMRLDLGELKKLEYISE-------GAFEGLFNLKYLN 202 (452)
T ss_dssp -C---TTTSSSCTTCCEEECCSCCCCEECTTT-----TTTCTTCCEEECCCCTTCCEECT-------TTTTTCTTCCEEE
T ss_pred -C---hhhhcccCCCCEEECCCCCcceeCHhH-----HhcCCcccEEeCCCCCCccccCh-------hhccCCCCCCEEE
Confidence 1 123567889999999999998654321 24568999999998554432221 1455566677777
Q ss_pred cccchhHHHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 357 LLNLSHIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
+.++. +. .++.... .+|++|+|++|.|+.... ..+....+|++|+|++|.++..... .+...++|+.|+
T Consensus 203 L~~n~-l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~ 272 (452)
T 3zyi_A 203 LGMCN-IK-DMPNLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNSQVSLIERN----AFDGLASLVELN 272 (452)
T ss_dssp CTTSC-CS-SCCCCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEE
T ss_pred CCCCc-cc-ccccccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCCCcCceECHH----HhcCCCCCCEEE
Confidence 66664 00 1111112 789999999999986532 3455667899999999999875443 344567899999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCC
Q 010572 436 AGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 471 (507)
Q Consensus 436 Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~ 471 (507)
|++|.|..-... .+. +..+|+.|+|++|.|.
T Consensus 273 L~~N~l~~~~~~----~~~-~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 273 LAHNNLSSLPHD----LFT-PLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCSSCCSCCCTT----SST-TCTTCCEEECCSSCEE
T ss_pred CCCCcCCccChH----Hhc-cccCCCEEEccCCCcC
Confidence 999999853321 222 2368999999999983
No 49
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.36 E-value=3.2e-13 Score=139.48 Aligned_cols=229 Identities=15% Similarity=0.120 Sum_probs=141.2
Q ss_pred hccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCC
Q 010572 194 LRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENC 273 (507)
Q Consensus 194 l~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~ 273 (507)
.....++.|+++++.... +-..++..+++|++|+|++|.+++.....+ . ....++.|+++.+.+.+.
T Consensus 42 ~~l~~l~~l~l~~~~l~~----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~----~l~~L~~L~L~~n~l~~~- 108 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK----LPAALLDSFRQVELLNLNDLQIEEIDTYAF----A----YAHTIQKLYMGFNAIRYL- 108 (390)
T ss_dssp GGGCCCSEEEEESCEESE----ECTHHHHHCCCCSEEECTTSCCCEECTTTT----T----TCTTCCEEECCSSCCCCC-
T ss_pred cccCCceEEEecCCchhh----CChhHhcccccCcEEECCCCcccccChhhc----c----CCCCcCEEECCCCCCCcC-
Confidence 345678899988764221 111223456899999999999875332221 1 123578888887765332
Q ss_pred CCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcC
Q 010572 274 PSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQ 353 (507)
Q Consensus 274 ~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~ 353 (507)
+ ..++..+++|++|+|++|++...... .....++|++|+|++|.|++..+. ++...++|+
T Consensus 109 ----~---~~~~~~l~~L~~L~L~~n~l~~l~~~-----~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~ 168 (390)
T 3o6n_A 109 ----P---PHVFQNVPLLTVLVLERNDLSSLPRG-----IFHNTPKLTTLSMSNNNLERIEDD--------TFQATTSLQ 168 (390)
T ss_dssp ----C---TTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSCCCBCCTT--------TTSSCTTCC
T ss_pred ----C---HHHhcCCCCCCEEECCCCccCcCCHH-----HhcCCCCCcEEECCCCccCccChh--------hccCCCCCC
Confidence 1 23467889999999999999865432 224568999999999999853321 233333333
Q ss_pred ccccccch--hH-HH-----------------------------------HHHhhhcCCCcEEEeccCCCCchhHHHHHH
Q 010572 354 SLRLLNLS--HI-AA-----------------------------------SLGKFFGTSVQVLNIGAIGLGSSGFRVLQD 395 (507)
Q Consensus 354 ~L~ll~l~--~~-~~-----------------------------------~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~ 395 (507)
.|.+.++. .. .. .++.....+|++|+|++|.+++. .
T Consensus 169 ~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~------~ 242 (390)
T 3o6n_A 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT------A 242 (390)
T ss_dssp EEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC------G
T ss_pred EEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc------H
Confidence 33333322 00 00 00000113566777777777653 2
Q ss_pred hhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCC
Q 010572 396 GVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWE 471 (507)
Q Consensus 396 aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~ 471 (507)
.+....+|++|+|++|.++...+. .+...++|++|+|++|.++.-.. .. .+..+|+.|+|++|.+.
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~-----~~-~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYH----PFVKMQRLERLYISNNRLVALNL-----YG-QPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESG----GGTTCSSCCEEECCSSCCCEEEC-----SS-SCCTTCCEEECCSSCCC
T ss_pred HHcCCCCccEEECCCCcCCCcChh----HccccccCCEEECCCCcCcccCc-----cc-CCCCCCCEEECCCCcce
Confidence 355567788888888888765433 33445789999999998875321 11 23368999999999873
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=140.46 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=30.2
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 428 APELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 428 n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
.++|++|++++|.|+.-... ++.. ..+|+.|+|++|++.-.......+.....+.
T Consensus 443 l~~L~~L~L~~N~l~~l~~~----~~~~-l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~ 497 (520)
T 2z7x_B 443 LEALQELNVASNQLKSVPDG----IFDR-LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 497 (520)
T ss_dssp CTTCCEEECCSSCCCCCCTT----TTTT-CTTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred CCCCCEEECCCCcCCccCHH----Hhcc-CCcccEEECcCCCCcccCCchHHHHHHHHhc
Confidence 45677777777777632211 2322 2568888888888732223344435555444
No 51
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=5.6e-13 Score=133.74 Aligned_cols=216 Identities=18% Similarity=0.083 Sum_probs=116.1
Q ss_pred cCCcCeeecccccChhhHHHHHHHHh-hCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLI-QNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~-~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~ 274 (507)
...|++|+++++...... ...+. ...++|++|+|++|.+++.....-...+.. ...++.|.++.+.+....
T Consensus 90 ~~~L~~L~l~~n~l~~~~---~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~- 161 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTM---PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL----KPGLKVLSIAQAHSPAFS- 161 (310)
T ss_dssp HSCCCEEEEESCCCBSCC---CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB----CSCCCEEEEECCSSCCCC-
T ss_pred cCceeEEEeeCCEeccch---hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh----ccCCCEEEeeCCCcchhh-
Confidence 345777777666322111 00111 345677777777777765322110011111 124666666665542211
Q ss_pred CcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCc
Q 010572 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (507)
Q Consensus 275 ~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~ 354 (507)
...+..+++|++|+|++|++.+....... ......++|++|+|++|.|+..... ....++..++|++
T Consensus 162 -------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~-----~~~l~~~l~~L~~ 228 (310)
T 4glp_A 162 -------CEQVRAFPALTSLDLSDNPGLGERGLMAA-LCPHKFPAIQNLALRNTGMETPTGV-----CAALAAAGVQPHS 228 (310)
T ss_dssp -------TTSCCCCTTCCEEECCSCTTCHHHHHHTT-SCTTSSCCCCSCBCCSSCCCCHHHH-----HHHHHHHTCCCSS
T ss_pred -------HHHhccCCCCCEEECCCCCCccchhhhHH-HhhhcCCCCCEEECCCCCCCchHHH-----HHHHHhcCCCCCE
Confidence 12345667777777777776443221110 0112346677777777777631100 0001344455666
Q ss_pred cccccch--hH-HHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCC
Q 010572 355 LRLLNLS--HI-AASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPE 430 (507)
Q Consensus 355 L~ll~l~--~~-~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~ 430 (507)
|.+.+|. .. ...+..... ++|++|+|++|+|+.. ...+. .+|++|+|++|.|+.- ..+...++
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-----p~~~~--~~L~~L~Ls~N~l~~~------~~~~~l~~ 295 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-----PKGLP--AKLRVLDLSSNRLNRA------PQPDELPE 295 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-----CSCCC--SCCSCEECCSCCCCSC------CCTTSCCC
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-----hhhhc--CCCCEEECCCCcCCCC------chhhhCCC
Confidence 6665554 00 011111111 5899999999999842 22232 6899999999999862 11344578
Q ss_pred ccEEEccCCCCChhH
Q 010572 431 LVEVNAGYNLMPLES 445 (507)
Q Consensus 431 L~~L~Ls~N~l~~~g 445 (507)
|+.|+|++|+|+++|
T Consensus 296 L~~L~L~~N~l~~~g 310 (310)
T 4glp_A 296 VDNLTLDGNPFLVPG 310 (310)
T ss_dssp CSCEECSSTTTSCCC
T ss_pred ccEEECcCCCCCCCC
Confidence 999999999998865
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.36 E-value=1.7e-12 Score=130.42 Aligned_cols=214 Identities=16% Similarity=0.120 Sum_probs=137.5
Q ss_pred ccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCC
Q 010572 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCP 274 (507)
Q Consensus 195 ~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~ 274 (507)
...+|++|+++++........ ..+...+++|++|+|++|.+++. +..+ ..+... ....++.|+++.+.+....
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~--~~~~L~~L~L~~N~l~~~~- 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPP--PLLEATGPDLNILNLRNVSWATR-DAWL-AELQQW--LKPGLKVLSIAQAHSLNFS- 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCC--CSSSCCSCCCSEEEEESCBCSSS-SSHH-HHHHTT--CCTTCCEEEEESCSCCCCC-
T ss_pred CcCCccEEEccCCcccchhHH--HHHHhcCCCccEEEccCCCCcch-hHHH-HHHHHh--hcCCCcEEEeeCCCCccch-
Confidence 467899999988754321100 01125678999999999999876 3222 222110 0135888888887764321
Q ss_pred CcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCc
Q 010572 275 SSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQS 354 (507)
Q Consensus 275 ~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~ 354 (507)
...+..+++|++|+|++|++.+.... .........++|++|+|++|.|++...
T Consensus 166 -------~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------- 218 (312)
T 1wwl_A 166 -------CEQVRVFPALSTLDLSDNPELGERGL-ISALCPLKFPTLQVLALRNAGMETPSG------------------- 218 (312)
T ss_dssp -------TTTCCCCSSCCEEECCSCTTCHHHHH-HHHSCTTSCTTCCEEECTTSCCCCHHH-------------------
T ss_pred -------HHHhccCCCCCEEECCCCCcCcchHH-HHHHHhccCCCCCEEECCCCcCcchHH-------------------
Confidence 13467889999999999998664321 111112456999999999999984110
Q ss_pred cccccchhHHHHHHhhh-c-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCcc
Q 010572 355 LRLLNLSHIAASLGKFF-G-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELV 432 (507)
Q Consensus 355 L~ll~l~~~~~~L~~~l-~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~ 432 (507)
... ..+ . .+|++|+|++|.|+..+.. .......+|++|+|++|.++. . ...+. ++|+
T Consensus 219 --------~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~l~~L~~L~Ls~N~l~~-i----p~~~~--~~L~ 277 (312)
T 1wwl_A 219 --------VCS---ALAAARVQLQGLDLSHNSLRDAAGA---PSCDWPSQLNSLNLSFTGLKQ-V----PKGLP--AKLS 277 (312)
T ss_dssp --------HHH---HHHHTTCCCSEEECTTSCCCSSCCC---SCCCCCTTCCEEECTTSCCSS-C----CSSCC--SEEE
T ss_pred --------HHH---HHHhcCCCCCEEECCCCcCCcccch---hhhhhcCCCCEEECCCCccCh-h----hhhcc--CCce
Confidence 000 111 1 6899999999999764300 112224679999999999872 1 22222 5799
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 433 EVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 433 ~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.|+|++|.|++.. .+.. ..+|+.|+|++|++
T Consensus 278 ~L~Ls~N~l~~~p------~~~~-l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 278 VLDLSYNRLDRNP------SPDE-LPQVGNLSLKGNPF 308 (312)
T ss_dssp EEECCSSCCCSCC------CTTT-SCEEEEEECTTCTT
T ss_pred EEECCCCCCCCCh------hHhh-CCCCCEEeccCCCC
Confidence 9999999998642 1222 36799999999997
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.35 E-value=2.6e-13 Score=134.07 Aligned_cols=217 Identities=13% Similarity=0.035 Sum_probs=141.0
Q ss_pred ceeEEEEeccCcchhhh-hhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCC-CChhHHHHHHHHhcc
Q 010572 174 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSPSFVEGICRSLCS 251 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~~-~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~-ls~~~~~~L~~~L~~ 251 (507)
..++.|++....-.... ..+....+|++|+++++.... +.+..+..+++|++|+|++|. ++......+ .
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~----~- 102 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR----IDAAAFTGLALLEQLDLSDNAQLRSVDPATF----H- 102 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSCTTCCCCCTTTT----T-
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce----eCHhhcCCccCCCEEeCCCCCCccccCHHHh----c-
Confidence 45888888742211111 123445689999998874321 111223567899999999997 554322111 1
Q ss_pred CCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 252 KRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 252 ~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
....++.|.++.+.+.+.. ...+..+++|++|+|++|.+....... ....++|++|+|++|.|+
T Consensus 103 ---~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 103 ---GLGRLHTLHLDRCGLQELG--------PGLFRGLAALQYLYLQDNALQALPDDT-----FRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp ---TCTTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCC
T ss_pred ---CCcCCCEEECCCCcCCEEC--------HhHhhCCcCCCEEECCCCcccccCHhH-----hccCCCccEEECCCCccc
Confidence 1235788888777654321 234677899999999999998765432 245689999999999998
Q ss_pred CcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCC
Q 010572 332 GWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKN 411 (507)
Q Consensus 332 ~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N 411 (507)
+.... .+... .+|++|+|++|.++.... .++....+|++|+|++|
T Consensus 167 ~~~~~--------~~~~l-----------------------~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 167 SVPER--------AFRGL-----------------------HSLDRLLLHQNRVAHVHP----HAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp EECTT--------TTTTC-----------------------TTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSS
T ss_pred ccCHH--------HhcCc-----------------------cccCEEECCCCcccccCH----hHccCcccccEeeCCCC
Confidence 52211 11111 568899999999986542 33455678999999999
Q ss_pred CCChHHHHHHHhhCCCCCCccEEEccCCCCCh-hHHHHHHHHHh
Q 010572 412 RGGVETAKFLSKLMPLAPELVEVNAGYNLMPL-ESLTIICSALK 454 (507)
Q Consensus 412 ~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~-~g~~~L~~aL~ 454 (507)
.++......+. ..++|+.|++++|++.. -....+.+-++
T Consensus 212 ~l~~~~~~~~~----~l~~L~~L~l~~N~~~c~~~~~~~~~~l~ 251 (285)
T 1ozn_A 212 NLSALPTEALA----PLRALQYLRLNDNPWVCDCRARPLWAWLQ 251 (285)
T ss_dssp CCSCCCHHHHT----TCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred cCCcCCHHHcc----cCcccCEEeccCCCccCCCCcHHHHHHHH
Confidence 99876655443 45789999999999963 23333334444
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.35 E-value=1.3e-13 Score=152.39 Aligned_cols=141 Identities=22% Similarity=0.168 Sum_probs=70.6
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch---
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS--- 361 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~--- 361 (507)
+..+++|++|+|++|.+.+.....+. .. ..++|++|+|++|.+++..+. .+....+|+.|.+.++.
T Consensus 141 ~~~l~~L~~L~L~~n~l~~~~~~~~~--~~-~~~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~l~~~~l~~ 209 (680)
T 1ziw_A 141 QVQLENLQELLLSNNKIQALKSEELD--IF-ANSSLKKLELSSNQIKEFSPG--------CFHAIGRLFGLFLNNVQLGP 209 (680)
T ss_dssp SSCCTTCCEEECCSSCCCCBCHHHHG--GG-TTCEESEEECTTCCCCCBCTT--------GGGGSSEECEEECTTCCCHH
T ss_pred hcccccCCEEEccCCcccccCHHHhh--cc-ccccccEEECCCCcccccChh--------hhhhhhhhhhhhccccccCh
Confidence 45567777777777777665544321 11 236777777777777653321 33344445554444433
Q ss_pred hHHHHHHhhhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCC
Q 010572 362 HIAASLGKFFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNL 440 (507)
Q Consensus 362 ~~~~~L~~~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~ 440 (507)
.....++..+. +.|++|+|++|.++..+...+... ...+|++|+|++|.++...... +...++|++|++++|.
T Consensus 210 ~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l--~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL--KWTNLTMLDLSYNNLNVVGNDS----FAWLPQLEYFFLEYNN 283 (680)
T ss_dssp HHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG--GGSCCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSCC
T ss_pred hhHHHHHHHhhhccccEEEccCCcccccChhHhhcc--CcCCCCEEECCCCCcCccCccc----ccCcccccEeeCCCCc
Confidence 22233333333 566666666666654332222110 1123666666666655433222 2233455555555555
Q ss_pred CC
Q 010572 441 MP 442 (507)
Q Consensus 441 l~ 442 (507)
+.
T Consensus 284 l~ 285 (680)
T 1ziw_A 284 IQ 285 (680)
T ss_dssp BS
T ss_pred cC
Confidence 54
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=2e-13 Score=149.59 Aligned_cols=112 Identities=15% Similarity=0.154 Sum_probs=76.1
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
...|++|+++++... ++.+..+.++++|++|+|++|.+++.....+ . ....++.|+++.+.+..
T Consensus 74 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~-------~l~~L~~L~L~~n~l~~---- 137 (597)
T 3oja_B 74 FRQVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-Q-------NVPLLTVLVLERNDLSS---- 137 (597)
T ss_dssp CCCCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTT-T-------TCTTCCEEECCSSCCCC----
T ss_pred CCCCcEEECCCCCCC----CCChHHhcCCCCCCEEECCCCcCCCCCHHHH-c-------CCCCCCEEEeeCCCCCC----
Confidence 567899999877432 1222223567899999999998876332211 0 12347788888776542
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
++. ..+..+++|++|+|++|.+.......+ ...++|++|+|++|.|++
T Consensus 138 -l~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 138 -LPR---GIFHNTPKLTTLSMSNNNLERIEDDTF-----QATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp -CCT---TTTTTCTTCCEEECCSSCCCBCCTTTT-----TTCTTCCEEECTTSCCSB
T ss_pred -CCH---HHhccCCCCCEEEeeCCcCCCCChhhh-----hcCCcCcEEECcCCCCCC
Confidence 221 235778999999999999987655322 446899999999999985
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=2.4e-13 Score=148.93 Aligned_cols=249 Identities=18% Similarity=0.074 Sum_probs=118.8
Q ss_pred eeEEEEeccCcchhhh-hhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCC
Q 010572 175 YARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~-~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~ 253 (507)
+++.|+|....-.... ..+.....|++|+|+++... ++.+..++++++|++|+|++|.++.-.. .++.
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~------ 144 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR----YLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFH------ 144 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTT------
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC----CCCHHHHcCCCCCCEEEeeCCCCCCCCH-HHhc------
Confidence 4666776532111111 12333557788888766322 1222233566778888888887763111 1000
Q ss_pred cccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 254 ~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
....++.|+++.+.+.... ...+..+++|++|+|++|.+.+.... ..++|+.|++++|.+++.
T Consensus 145 -~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~--------~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 145 -NTPKLTTLSMSNNNLERIE--------DDTFQATTSLQNLQLSSNRLTHVDLS--------LIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp -TCTTCCEEECCSSCCCBCC--------TTTTTTCTTCCEEECTTSCCSBCCGG--------GCTTCSEEECCSSCCSEE
T ss_pred -cCCCCCEEEeeCCcCCCCC--------hhhhhcCCcCcEEECcCCCCCCcChh--------hhhhhhhhhcccCccccc
Confidence 1134666666666543211 12345667777777777777664321 124444444444444421
Q ss_pred c-------------------ccc---------ccCCch--hhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEec
Q 010572 334 L-------------------SKY---------DRSGPL--FSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIG 381 (507)
Q Consensus 334 l-------------------~~~---------~~~~l~--~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls 381 (507)
. ..+ +...+. ..+...++|+.|.+.+|. +.+..+..+. ++|++|+|+
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECT
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECC
Confidence 0 000 000000 023333444444444443 1111122222 556666666
Q ss_pred cCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCcc
Q 010572 382 AIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQ 461 (507)
Q Consensus 382 ~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~ 461 (507)
+|.++... .......+|++|+|++|.++.- +..+.. .++|+.|+|++|.|.... +. ...+|+
T Consensus 287 ~N~l~~l~-----~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~----l~~L~~L~L~~N~l~~~~-------~~-~~~~L~ 348 (597)
T 3oja_B 287 NNRLVALN-----LYGQPIPTLKVLDLSHNHLLHV-ERNQPQ----FDRLENLYLDHNSIVTLK-------LS-THHTLK 348 (597)
T ss_dssp TSCCCEEE-----CSSSCCTTCCEEECCSSCCCCC-GGGHHH----HTTCSEEECCSSCCCCCC-------CC-TTCCCS
T ss_pred CCCCCCCC-----cccccCCCCcEEECCCCCCCcc-Cccccc----CCCCCEEECCCCCCCCcC-------hh-hcCCCC
Confidence 66665421 1112244567777777766531 112222 256777777777775432 22 124688
Q ss_pred EEEecCCCC
Q 010572 462 RLDLTGNNW 470 (507)
Q Consensus 462 ~LdL~~N~~ 470 (507)
.|+|++|+|
T Consensus 349 ~L~l~~N~~ 357 (597)
T 3oja_B 349 NLTLSHNDW 357 (597)
T ss_dssp EEECCSSCE
T ss_pred EEEeeCCCC
Confidence 888888876
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=139.62 Aligned_cols=236 Identities=14% Similarity=0.099 Sum_probs=145.3
Q ss_pred CCcCeeecccccC---hhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccC-
Q 010572 197 SKLQSLVLRWIRF---EEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIEN- 272 (507)
Q Consensus 197 ~~L~~L~Ls~~~~---~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~- 272 (507)
..|+.|+++++.. ...+.+..+.+ ..+++|++|+++++.+++..+..+...+..+ .++.|+++.+.+.+.
T Consensus 190 ~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~-----~L~~L~l~~n~l~~~~ 263 (520)
T 2z7x_B 190 ANLELSNIKCVLEDNKCSYFLSILAKL-QTNPKLSNLTLNNIETTWNSFIRILQLVWHT-----TVWYFSISNVKLQGQL 263 (520)
T ss_dssp SEEEECCEEECCSTTTTHHHHHHHHGG-GGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS-----SCSEEEEEEEEEESCC
T ss_pred cceeeccccccccccccceeecchhhh-ccccchhhccccccccCHHHHHHHHHHhhhC-----cccEEEeecccccCcc
Confidence 3456666665531 11233334433 4567888888888888877776665543321 345555444433210
Q ss_pred ----------------------CCCcch-HHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCC
Q 010572 273 ----------------------CPSSVV-VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNS 329 (507)
Q Consensus 273 ----------------------~~~~l~-~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~ 329 (507)
+...++ ..+.. +...++|++|++++|++.+... ....++|++|+|++|.
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~-~~~~~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE-IFSNMNIKNFTVSGTRMVHMLC-------PSKISPFLHLDFSNNL 335 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHH-HHHTCCCSEEEEESSCCCCCCC-------CSSCCCCCEEECCSSC
T ss_pred ccchhhcccccCceeEeccccccceecchhhhhc-ccccCceeEEEcCCCccccccc-------hhhCCcccEEEeECCc
Confidence 000122 22222 2234578888888888765431 1345889999999999
Q ss_pred CCCcccccccCCchhhcccCCCcCccccccch-hHHHHHHhhhc--CCCcEEEeccCCCCc-hhHHHHHHhhcCCCCCCE
Q 010572 330 IGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HIAASLGKFFG--TSVQVLNIGAIGLGS-SGFRVLQDGVTKELKLVN 405 (507)
Q Consensus 330 L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~~~~L~~~l~--~~L~~L~Ls~n~l~~-~G~~~L~~aL~~n~~L~~ 405 (507)
+++..+. .+...++|+.|.+.++. .....++..+. ++|++|+|++|.++. ... ..+....+|++
T Consensus 336 l~~~~~~--------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~----~~~~~l~~L~~ 403 (520)
T 2z7x_B 336 LTDTVFE--------NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK----GDCSWTKSLLS 403 (520)
T ss_dssp CCTTTTT--------TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG----CSCCCCTTCCE
T ss_pred cChhhhh--------hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc----chhccCccCCE
Confidence 9874442 45666777777777765 23334445454 889999999999976 221 12334568999
Q ss_pred EeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 406 INISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 406 LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+|++|.+++..... +. ++|+.|++++|.|+. +...+. ...+|+.|+|++|.+
T Consensus 404 L~Ls~N~l~~~~~~~----l~--~~L~~L~Ls~N~l~~-----ip~~~~-~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 404 LNMSSNILTDTIFRC----LP--PRIKVLDLHSNKIKS-----IPKQVV-KLEALQELNVASNQL 456 (520)
T ss_dssp EECCSSCCCGGGGGS----CC--TTCCEEECCSSCCCC-----CCGGGG-GCTTCCEEECCSSCC
T ss_pred EECcCCCCCcchhhh----hc--ccCCEEECCCCcccc-----cchhhh-cCCCCCEEECCCCcC
Confidence 999999998654322 11 579999999999983 112233 236799999999998
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.34 E-value=2.1e-13 Score=137.93 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=55.9
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
++|++|+|++|.++.... ..+....+|++|+|++|.++. +...+...++|+.|++++|.|+..+...++..
T Consensus 217 ~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIEN----GSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp TTCSCCBCCSSCCCCCCT----TGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred CCCCEEECCCCcCCcCCh----hHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 677888888888765432 123445678888888888762 12223445678888888888876655433322
Q ss_pred H-hcCCCCccEEEecCCCC
Q 010572 453 L-KVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L-~~~~~~L~~LdL~~N~~ 470 (507)
. ......|+.|++.+|.+
T Consensus 288 ~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp SCCSSSCCBSEEECCSSSS
T ss_pred ccccccccccceEeecCcc
Confidence 1 11124678888888876
No 59
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.34 E-value=2.2e-12 Score=133.32 Aligned_cols=208 Identities=17% Similarity=0.125 Sum_probs=100.9
Q ss_pred CCccEEEeecCCCCh----hHHHHHHHHhccCCcccccccceeccccccccCCCCc-c-hHHHHHHHhCCCCCCEEEccC
Q 010572 225 ETLASLEFLHCKLSP----SFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS-V-VVELVSFLSSGRSLCSLKLRH 298 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~----~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~-l-~~~L~~~L~~~~sL~~L~LS~ 298 (507)
..++.|.+....+.+ +.++.|++++.. ...++.|.+....+ +.+... + ..++..++...|+|++|+|++
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~----l~~L~~L~l~~~~~-e~~~is~~~~~~L~~ll~~~P~L~~L~L~g 181 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEK----FAHFEGLFWGDIDF-EEQEISWIEQVDLSPVLDAMPLLNNLKIKG 181 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHH----HTTCSEEEECCCCT-TTCCGGGCBCCBCHHHHHTCTTCCEEEEEC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhh----cchhhheeecCcch-hhcccccccccCHHHHHhcCCCCcEEEEeC
Confidence 357888888766652 244555443221 12466666543321 100000 0 012456677888888888887
Q ss_pred CC-CCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcccccc---ch---hHHHHHHhhh
Q 010572 299 CH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLN---LS---HIAASLGKFF 371 (507)
Q Consensus 299 N~-L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~---l~---~~~~~L~~~l 371 (507)
|. +.-. .+ . .++|++|+|+.|.++..... ..+....++|++|.+.. +. .+...++..+
T Consensus 182 ~~~l~l~-------~~-~-~~~L~~L~L~~~~l~~~~l~------~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 182 TNNLSIG-------KK-P-RPNLKSLEIISGGLPDSVVE------DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp CBTCBCC-------SC-B-CTTCSEEEEECSBCCHHHHH------HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred CCCceec-------cc-c-CCCCcEEEEecCCCChHHHH------HHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 72 2110 11 2 47888888888877642110 00111334444444311 00 0111222222
Q ss_pred c----CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHH
Q 010572 372 G----TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLT 447 (507)
Q Consensus 372 ~----~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~ 447 (507)
. ++|++|+|++|.+++.++..++++ +..++|++|+|+.|.+++.|++.+...+..+++|+.|+|+.|.|+++|++
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 1 455555555555555555544443 23445555555555555555555554444444555555555555555555
Q ss_pred HHHHHH
Q 010572 448 IICSAL 453 (507)
Q Consensus 448 ~L~~aL 453 (507)
.|++++
T Consensus 326 ~l~~al 331 (362)
T 2ra8_A 326 ELQKSL 331 (362)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 555444
No 60
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.34 E-value=9.7e-13 Score=136.07 Aligned_cols=188 Identities=12% Similarity=0.073 Sum_probs=130.8
Q ss_pred HHHHHHhCCCCCCEEEccCCCCCchHH-----HHHHHHhccCCCCccEEECcCCC-CCCcccccccCCchhhcccCCCcC
Q 010572 280 ELVSFLSSGRSLCSLKLRHCHLDRDFG-----RMVFSSLLEASSSLSILDLSGNS-IGGWLSKYDRSGPLFSLGAGKSLQ 353 (507)
Q Consensus 280 ~L~~~L~~~~sL~~L~LS~N~L~~~g~-----~~L~~~L~~~~~~L~~LdLS~N~-L~~~l~~~~~~~l~~~L~~~~~L~ 353 (507)
.+..++...++|+.|.+.++...+..+ ..+... ....++|++|+|++|. +. +. .+ ...+|+
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~l-l~~~P~L~~L~L~g~~~l~--l~---------~~-~~~~L~ 196 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPV-LDAMPLLNNLKIKGTNNLS--IG---------KK-PRPNLK 196 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHH-HHTCTTCCEEEEECCBTCB--CC---------SC-BCTTCS
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHH-HhcCCCCcEEEEeCCCCce--ec---------cc-cCCCCc
Confidence 345556667899999998765432111 012222 2445899999999872 21 11 12 245677
Q ss_pred ccccccch---hHHHHHHhhhcCCCcEEEecc---CCCCchhHHHHHHhhc--CCCCCCEEeccCCCCChHHHHHHHhhC
Q 010572 354 SLRLLNLS---HIAASLGKFFGTSVQVLNIGA---IGLGSSGFRVLQDGVT--KELKLVNINISKNRGGVETAKFLSKLM 425 (507)
Q Consensus 354 ~L~ll~l~---~~~~~L~~~l~~~L~~L~Ls~---n~l~~~G~~~L~~aL~--~n~~L~~LdLs~N~i~~~g~~~L~~~L 425 (507)
+|.+.... .....++..--++|++|+|+. +..++.+.+.++..+. ..++|++|+|++|.+++.++..++.+
T Consensus 197 ~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a- 275 (362)
T 2ra8_A 197 SLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES- 275 (362)
T ss_dssp EEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-
T ss_pred EEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-
Confidence 77765443 444555433237899999864 2235555666776665 35789999999999999998888876
Q ss_pred CCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHH
Q 010572 426 PLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFR 484 (507)
Q Consensus 426 ~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~ 484 (507)
..+++|++|+|++|.|++.|++.|+.+++.. ++|+.|+|+.|. +++++++.|++..
T Consensus 276 ~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l-~~L~~L~L~~n~--i~d~~~~~l~~al 331 (362)
T 2ra8_A 276 DILPQLETMDISAGVLTDEGARLLLDHVDKI-KHLKFINMKYNY--LSDEMKKELQKSL 331 (362)
T ss_dssp SSGGGCSEEECCSSCCBHHHHHHHHTTHHHH-TTCSEEECCSBB--CCHHHHHHHHHHC
T ss_pred ccCCCCCEEECCCCCCChHHHHHHHhhcccC-CcceEEECCCCc--CCHHHHHHHHHHc
Confidence 3567899999999999999999998877644 689999999997 5888999888754
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.34 E-value=5.1e-13 Score=131.39 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=65.9
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCC-EEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLV-NINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~-~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
++|++|+|++|.++......+.. +.....|. +|++++|.++...... ....+|++|++++|.|+.... .
T Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~l~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~----~ 218 (276)
T 2z62_A 149 TNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGA-----FKEIRLKELALDTNQLKSVPD----G 218 (276)
T ss_dssp TTCCEEECCSSCCCEECGGGGHH-HHTCTTCCEEEECCSSCCCEECTTS-----SCSCCEEEEECCSSCCSCCCT----T
T ss_pred CCCCEEECCCCCCCcCCHHHhhh-hhhccccceeeecCCCcccccCccc-----cCCCcccEEECCCCceeecCH----h
Confidence 78999999999998765444433 33333444 8999999987643221 223479999999999985332 1
Q ss_pred HHhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 452 ALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
++.. ..+|+.|+|++|++.-.....+.+.....
T Consensus 219 ~~~~-l~~L~~L~l~~N~~~c~c~~l~~l~~~~~ 251 (276)
T 2z62_A 219 IFDR-LTSLQKIWLHTNPWDCSCPRIDYLSRWLN 251 (276)
T ss_dssp TTTT-CCSCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred Hhcc-cccccEEEccCCcccccCCchHHHHHHHH
Confidence 2232 36899999999998333222344433333
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.33 E-value=1.5e-12 Score=131.22 Aligned_cols=204 Identities=18% Similarity=0.163 Sum_probs=140.8
Q ss_pred hHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCC
Q 010572 212 HVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSL 291 (507)
Q Consensus 212 ~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL 291 (507)
.+......+....++|++|+|++|.+++..+..+. . ...++.|+++.+.+.+. . .+..+++|
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~-------l~~L~~L~Ls~n~l~~~-----~-----~~~~l~~L 82 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-P-------FTKLELLNLSSNVLYET-----L-----DLESLSTL 82 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHT-T-------CTTCCEEECTTSCCEEE-----E-----EETTCTTC
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhh-C-------CCcCCEEECCCCcCCcc-----h-----hhhhcCCC
Confidence 34444444445667999999999999876554431 1 23588888887765321 1 16778999
Q ss_pred CEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhh
Q 010572 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFF 371 (507)
Q Consensus 292 ~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l 371 (507)
++|+|++|.+++.. ..++|++|+|++|.|++... ...++|+.|.+.++. +....+..+
T Consensus 83 ~~L~Ls~n~l~~l~----------~~~~L~~L~l~~n~l~~~~~-----------~~~~~L~~L~l~~N~-l~~~~~~~~ 140 (317)
T 3o53_A 83 RTLDLNNNYVQELL----------VGPSIETLHAANNNISRVSC-----------SRGQGKKNIYLANNK-ITMLRDLDE 140 (317)
T ss_dssp CEEECCSSEEEEEE----------ECTTCCEEECCSSCCSEEEE-----------CCCSSCEEEECCSSC-CCSGGGBCT
T ss_pred CEEECcCCcccccc----------CCCCcCEEECCCCccCCcCc-----------cccCCCCEEECCCCC-CCCccchhh
Confidence 99999999987633 24899999999999986322 123456677666664 111111222
Q ss_pred c--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHH
Q 010572 372 G--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTII 449 (507)
Q Consensus 372 ~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L 449 (507)
. +.|++|+|++|.++......+. ....+|++|+|++|.++.. ......++|++|+|++|.|+.-..
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~---~~l~~L~~L~L~~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~l~~--- 208 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELA---ASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMGP--- 208 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGG---GGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEECG---
T ss_pred hccCCCCEEECCCCCCCcccHHHHh---hccCcCCEEECCCCcCccc------ccccccccCCEEECCCCcCCcchh---
Confidence 2 7899999999999876543332 2346899999999999764 122235789999999999985432
Q ss_pred HHHHhcCCCCccEEEecCCCC
Q 010572 450 CSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 450 ~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+... .+|+.|+|++|.+
T Consensus 209 --~~~~l-~~L~~L~L~~N~l 226 (317)
T 3o53_A 209 --EFQSA-AGVTWISLRNNKL 226 (317)
T ss_dssp --GGGGG-TTCSEEECTTSCC
T ss_pred --hhccc-CcccEEECcCCcc
Confidence 13332 5799999999997
No 63
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.33 E-value=3.9e-13 Score=135.93 Aligned_cols=259 Identities=14% Similarity=0.048 Sum_probs=147.1
Q ss_pred eeEEEEeccCcchhh-hhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCC
Q 010572 175 YARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~-~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~ 253 (507)
.++.|++.+..-... ...+....+|++|+++++... .+.+..+.++++|++|+|++|.++. .+..
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~--------- 120 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS----KIHEKAFSPLRKLQKLYISKNHLVE-IPPN--------- 120 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC----EECGGGSTTCTTCCEEECCSSCCCS-CCSS---------
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC----ccCHhHhhCcCCCCEEECCCCcCCc-cCcc---------
Confidence 467777764211110 112334567788888776432 1112223466788888888887762 1100
Q ss_pred cccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 254 ~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
. ...++.|+++.+.+... + ...+..+++|++|+|++|.++..+... ..+ ... +|++|++++|.|++.
T Consensus 121 ~-~~~L~~L~l~~n~i~~~-----~---~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~-~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 121 L-PSSLVELRIHDNRIRKV-----P---KGVFSGLRNMNCIEMGGNPLENSGFEP--GAF-DGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp C-CTTCCEEECCSSCCCCC-----C---SGGGSSCSSCCEEECCSCCCBGGGSCT--TSS-CSC-CCSCCBCCSSBCSSC
T ss_pred c-cccCCEEECCCCccCcc-----C---HhHhCCCccCCEEECCCCccccCCCCc--ccc-cCC-ccCEEECcCCCCCcc
Confidence 0 13467777776654321 1 124577888888999888887544321 111 222 666777777666631
Q ss_pred cccc---------ccCCc----hhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhc
Q 010572 334 LSKY---------DRSGP----LFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVT 398 (507)
Q Consensus 334 l~~~---------~~~~l----~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~ 398 (507)
-..+ +...+ ...+....+|+.|.+.++. +.......+. .+|++|+|++|.++. +...+.
T Consensus 188 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~ 261 (332)
T 2ft3_A 188 PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSR-----VPAGLP 261 (332)
T ss_dssp CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCB-----CCTTGG
T ss_pred CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCee-----cChhhh
Confidence 1100 00000 0134555566666666654 1111111233 789999999999984 333466
Q ss_pred CCCCCCEEeccCCCCChHHHHHHHhhCC--CCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCC
Q 010572 399 KELKLVNINISKNRGGVETAKFLSKLMP--LAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 399 ~n~~L~~LdLs~N~i~~~g~~~L~~~L~--~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~ 469 (507)
...+|++|+|++|.++..+...++.... ..+.|+.|++++|++...++.. .++.. ..+|+.|+|++|.
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~--~~~~~-l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP--ATFRC-VTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG--GGGTT-BCCSTTEEC----
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc--ccccc-cchhhhhhccccc
Confidence 6788999999999999877666654321 1356999999999998433221 23433 3579999999885
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.32 E-value=4.6e-13 Score=140.88 Aligned_cols=202 Identities=17% Similarity=0.119 Sum_probs=141.6
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
.++++|+|++|.++......+ . ....++.|+++.+.+.+ +. ..++..+++|++|+|++|+|...
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~----~----~l~~L~~L~Ls~n~i~~-----i~---~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSF----K----HLRHLEILQLSRNHIRT-----IE---IGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTT----S----SCSSCCEEECCSSCCCE-----EC---GGGGTTCSSCCEEECCSSCCSSC
T ss_pred CCCcEEEccCCcCCeeCHHHh----h----CCCCCCEEECCCCcCCc-----cC---hhhccCCccCCEEECCCCcCCee
Confidence 579999999999875433221 1 12357888888776533 11 23567889999999999999865
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEecc
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGA 382 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~ 382 (507)
.... ....++|++|+|++|.|+..... .+...++|+.|.+.++......-...+. .+|++|+|++
T Consensus 128 ~~~~-----~~~l~~L~~L~L~~N~i~~~~~~--------~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 128 PNGA-----FVYLSKLKELWLRNNPIESIPSY--------AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CTTT-----SCSCSSCCEEECCSCCCCEECTT--------TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CHhH-----hhccccCceeeCCCCcccccCHH--------HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 4422 24568999999999999853221 5566677777777664311100011233 7899999999
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccE
Q 010572 383 IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQR 462 (507)
Q Consensus 383 n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~ 462 (507)
|.|+... .+....+|++|+|++|.++..... .+...++|+.|+|++|.|..... .++.. ..+|+.
T Consensus 195 n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~----~~~~~-l~~L~~ 259 (440)
T 3zyj_A 195 CNLREIP------NLTPLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQVIER----NAFDN-LQSLVE 259 (440)
T ss_dssp SCCSSCC------CCTTCSSCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECT----TSSTT-CTTCCE
T ss_pred CcCcccc------ccCCCcccCEEECCCCccCccChh----hhccCccCCEEECCCCceeEECh----hhhcC-CCCCCE
Confidence 9998643 255567899999999999875443 44556789999999999986443 23333 368999
Q ss_pred EEecCCCC
Q 010572 463 LDLTGNNW 470 (507)
Q Consensus 463 LdL~~N~~ 470 (507)
|+|++|.+
T Consensus 260 L~L~~N~l 267 (440)
T 3zyj_A 260 INLAHNNL 267 (440)
T ss_dssp EECTTSCC
T ss_pred EECCCCCC
Confidence 99999998
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.32 E-value=5.6e-13 Score=140.71 Aligned_cols=201 Identities=20% Similarity=0.141 Sum_probs=141.3
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
.++++|+|++|.++......+ . ....++.|+++.+.+.+.. ...+..+++|++|+|++|.|...
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~----~----~l~~L~~L~Ls~n~i~~~~--------~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTF----R----HLHHLEVLQLGRNSIRQIE--------VGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTT----T----TCTTCCEEECCSSCCCEEC--------TTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCccEEECcCCcCceECHHHc----C----CCCCCCEEECCCCccCCcC--------hhhccCcccCCEEECCCCcCCcc
Confidence 579999999999876433222 1 1235788888877653321 23467789999999999999875
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH-hhhc--CCCcEEEec
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG-KFFG--TSVQVLNIG 381 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~-~~l~--~~L~~L~Ls 381 (507)
.... ....++|++|+|++|.|+..... .+...++|+.|.+.++.... .+. ..+. .+|++|+|+
T Consensus 139 ~~~~-----~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~l~~~~~l~-~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 139 PSGA-----FEYLSKLRELWLRNNPIESIPSY--------AFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CTTT-----SSSCTTCCEEECCSCCCCEECTT--------TTTTCTTCCEEECCCCTTCC-EECTTTTTTCTTCCEEECT
T ss_pred Chhh-----hcccCCCCEEECCCCCcceeCHh--------HHhcCCcccEEeCCCCCCcc-ccChhhccCCCCCCEEECC
Confidence 5432 24568999999999999853221 55666777777776643110 111 1222 789999999
Q ss_pred cCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCcc
Q 010572 382 AIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQ 461 (507)
Q Consensus 382 ~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~ 461 (507)
+|.|+... .+....+|++|+|++|.++..... .+...++|+.|+|++|.|...... ++.. ..+|+
T Consensus 205 ~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~----~~~~-l~~L~ 269 (452)
T 3zyi_A 205 MCNIKDMP------NLTPLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQVSLIERN----AFDG-LASLV 269 (452)
T ss_dssp TSCCSSCC------CCTTCTTCCEEECTTSCCSEECGG----GGTTCTTCCEEECTTSCCCEECTT----TTTT-CTTCC
T ss_pred CCcccccc------cccccccccEEECcCCcCcccCcc----cccCccCCCEEEeCCCcCceECHH----HhcC-CCCCC
Confidence 99998642 255667899999999999875443 344557899999999999864322 2332 36899
Q ss_pred EEEecCCCC
Q 010572 462 RLDLTGNNW 470 (507)
Q Consensus 462 ~LdL~~N~~ 470 (507)
.|+|++|.+
T Consensus 270 ~L~L~~N~l 278 (452)
T 3zyi_A 270 ELNLAHNNL 278 (452)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 999999998
No 66
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.32 E-value=4.3e-12 Score=134.44 Aligned_cols=79 Identities=14% Similarity=0.031 Sum_probs=51.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
+.|++|+|++|.++.... +....+|++|+|++|.+++..+ +...++|+.|++++|.+.+. ..
T Consensus 287 ~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------~~ 348 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDV------SS 348 (466)
T ss_dssp TTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC------GG
T ss_pred CccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCc------hh
Confidence 567777777777665321 3445677777777777766543 23446788888888887753 12
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|++++|.+
T Consensus 349 l~~-l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 349 LAN-LTNINWLSAGHNQI 365 (466)
T ss_dssp GTT-CTTCCEEECCSSCC
T ss_pred hcc-CCCCCEEeCCCCcc
Confidence 332 35788888888886
No 67
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.31 E-value=1.8e-13 Score=151.32 Aligned_cols=246 Identities=14% Similarity=0.103 Sum_probs=132.1
Q ss_pred ccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCC-CCh-hHHHHHHHHhccCCcccccccceeccccccccC
Q 010572 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 272 (507)
Q Consensus 195 ~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~-ls~-~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~ 272 (507)
....|++|+++++.... ..+..+.++++|++|+|++|. +++ ..+..+.. |... .....++.|+++.+.+.+
T Consensus 247 ~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-L~~~-~~l~~L~~L~L~~n~l~~- 319 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLINVACNRGISGEQLKDDWQA-LADA-PVGEKIQIIYIGYNNLKT- 319 (636)
T ss_dssp GCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH-HHHS-GGGGTCCEEECCSSCCSS-
T ss_pred ccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEECcCCCCCccccchHHHHh-hhcc-ccCCCCCEEECCCCcCCc-
Confidence 56789999998874322 122334577899999999998 988 66655532 2000 001347778877766531
Q ss_pred CCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-c-ccCC---------
Q 010572 273 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-Y-DRSG--------- 341 (507)
Q Consensus 273 ~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~-~~~~--------- 341 (507)
++. ...+..+++|++|+|++|.+.+... .+ ...++|++|+|++|.|+. ++. + ....
T Consensus 320 ----ip~--~~~l~~l~~L~~L~L~~N~l~g~ip-----~~-~~l~~L~~L~L~~N~l~~-lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 320 ----FPV--ETSLQKMKKLGMLECLYNQLEGKLP-----AF-GSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp ----CCC--HHHHTTCTTCCEEECCSCCCEEECC-----CC-EEEEEESEEECCSSEEEE-CCTTSEEECTTCCEEECCS
T ss_pred ----cCc--hhhhccCCCCCEEeCcCCcCccchh-----hh-CCCCCCCEEECCCCcccc-ccHhhhhhcccCcEEEccC
Confidence 221 1256778888888888888874433 12 233667777777776651 111 0 0000
Q ss_pred -----chhhcccC--CCcCccccccchhHHHHHHhhh--------c-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCE
Q 010572 342 -----PLFSLGAG--KSLQSLRLLNLSHIAASLGKFF--------G-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVN 405 (507)
Q Consensus 342 -----l~~~L~~~--~~L~~L~ll~l~~~~~~L~~~l--------~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~ 405 (507)
+...+... .+|+.|.+.++. +.+.++..+ . .+|++|+|++|.|+..... ......+|++
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~----~~~~l~~L~~ 461 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE----LFSTGSPLSS 461 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH----HHHTTCCCSE
T ss_pred CcCcccchhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH----HHccCCCCCE
Confidence 00011111 133444443332 111111111 1 4677777777777643211 1123456788
Q ss_pred EeccCCCCChHHHHHHHhh---CCCCCCccEEEccCCCCChhHHHHHHHHHh-cCCCCccEEEecCCCC
Q 010572 406 INISKNRGGVETAKFLSKL---MPLAPELVEVNAGYNLMPLESLTIICSALK-VAKGHLQRLDLTGNNW 470 (507)
Q Consensus 406 LdLs~N~i~~~g~~~L~~~---L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~-~~~~~L~~LdL~~N~~ 470 (507)
|+|++|.++.-....+... ++..++|+.|+|++|.|+. +...+. ....+|+.|+|++|.+
T Consensus 462 L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp EECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCCCC
Confidence 8888887762111111100 1111278888888888873 112332 1336799999999987
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.31 E-value=1e-11 Score=133.47 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=60.4
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
.+|++|+|++|+|+.. ......|++|+|++|+++.- .. . ...++|+.|+|++|.|..... .+
T Consensus 431 ~~L~~L~Ls~N~l~~~--------~~~l~~L~~L~Ls~N~l~~i-p~-~----~~l~~L~~L~Ls~N~l~~~~~----~~ 492 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSF--------SLFLPRLQELYISRNKLKTL-PD-A----SLFPVLLVMKISRNQLKSVPD----GI 492 (549)
T ss_dssp TTCSEEECCSSCCSCC--------CCCCTTCCEEECCSSCCSSC-CC-G----GGCTTCCEEECCSSCCCCCCT----TG
T ss_pred CCceEEECCCCChhhh--------cccCChhcEEECCCCccCcC-CC-c----ccCccCCEEecCCCccCCcCH----HH
Confidence 4677777777777642 12456799999999988621 11 1 234679999999999975322 12
Q ss_pred HhcCCCCccEEEecCCCCCCCccHHHHHHHHHHc
Q 010572 453 LKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHN 486 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~ 486 (507)
+... .+|+.|+|++|++.-.-.....+.+..+.
T Consensus 493 ~~~l-~~L~~L~l~~N~~~~~~~~~~~l~~~l~~ 525 (549)
T 2z81_A 493 FDRL-TSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525 (549)
T ss_dssp GGGC-TTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred HhcC-cccCEEEecCCCccCCCccHHHHHHHHHh
Confidence 3333 57999999999982222224555555544
No 69
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.31 E-value=1.5e-11 Score=130.33 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=102.2
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch-hH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS-HI 363 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~ 363 (507)
+..+++|++|+|++|.+.+... + ...++|++|+|++|.+++.. .+...++|+.|.+.++. ..
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP------L-SGLTKLTELKLGANQISNIS----------PLAGLTALTNLELNENQLED 301 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG------G-TTCTTCSEEECCSSCCCCCG----------GGTTCTTCSEEECCSSCCSC
T ss_pred hhcCCCCCEEECCCCccccchh------h-hcCCCCCEEECCCCccCccc----------cccCCCccCeEEcCCCcccC
Confidence 4556677777777777665433 1 33466777777777766421 24455667777776665 11
Q ss_pred HHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 364 AASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 364 ~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
...+.. -++|++|+|++|.++.... +....+|++|++++|.+++. ..+...++|+.|++++|.+.+
T Consensus 302 ~~~~~~--l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 302 ISPISN--LKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDV------SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CGGGGG--CTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCB
T ss_pred chhhcC--CCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCc------hhhccCCCCCEEeCCCCccCc
Confidence 111111 1889999999999987542 45678899999999999875 245567899999999999987
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 444 ESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 444 ~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
... +.. ..+|+.|++++|.+
T Consensus 368 ~~~------~~~-l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 368 LTP------LAN-LTRITQLGLNDQAW 387 (466)
T ss_dssp CGG------GTT-CTTCCEEECCCEEE
T ss_pred cch------hhc-CCCCCEEeccCCcc
Confidence 542 333 36899999999987
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.30 E-value=7.2e-12 Score=125.90 Aligned_cols=190 Identities=21% Similarity=0.195 Sum_probs=113.5
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
...|++|+++++.... +. . +..+++|++|+|++|.+++-.. +.. ...++.|+++.+.+.+
T Consensus 40 l~~L~~L~l~~~~i~~-l~----~-~~~l~~L~~L~L~~n~i~~~~~------~~~----l~~L~~L~L~~n~l~~---- 99 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE----G-VQYLNNLIGLELKDNQITDLAP------LKN----LTKITELELSGNPLKN---- 99 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT----T-GGGCTTCCEEECCSSCCCCCGG------GTT----CCSCCEEECCSCCCSC----
T ss_pred cCCcCEEEeeCCCccC-ch----h-hhccCCCCEEEccCCcCCCChh------Hcc----CCCCCEEEccCCcCCC----
Confidence 3456777776653221 11 1 2345677777777776654222 111 1235555555554322
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
+ ..+..+++|++|+|++|.+.+... + ...++|++|+|++|.|++..
T Consensus 100 -~-----~~~~~l~~L~~L~l~~n~l~~~~~------l-~~l~~L~~L~l~~n~l~~~~--------------------- 145 (308)
T 1h6u_A 100 -V-----SAIAGLQSIKTLDLTSTQITDVTP------L-AGLSNLQVLYLDLNQITNIS--------------------- 145 (308)
T ss_dssp -C-----GGGTTCTTCCEEECTTSCCCCCGG------G-TTCTTCCEEECCSSCCCCCG---------------------
T ss_pred -c-----hhhcCCCCCCEEECCCCCCCCchh------h-cCCCCCCEEECCCCccCcCc---------------------
Confidence 1 124555666666666666655321 1 23466666666666665311
Q ss_pred ccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 356 RLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
.+.. -..|++|+|++|.+++... +....+|++|+|++|.+++... +...++|++|+
T Consensus 146 ----------~l~~--l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~ 201 (308)
T 1h6u_A 146 ----------PLAG--LTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISDISP------LASLPNLIEVH 201 (308)
T ss_dssp ----------GGGG--CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEE
T ss_pred ----------cccC--CCCccEEEccCCcCCCChh------hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEE
Confidence 0100 1678899999999876442 4556789999999999876543 34557899999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 436 AGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 436 Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+++|.+.+.. .+.. ..+|+.|+|++|.+
T Consensus 202 L~~N~l~~~~------~l~~-l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 202 LKNNQISDVS------PLAN-TSNLFIVTLTNQTI 229 (308)
T ss_dssp CTTSCCCBCG------GGTT-CTTCCEEEEEEEEE
T ss_pred ccCCccCccc------cccC-CCCCCEEEccCCee
Confidence 9999998654 1333 36799999999987
No 71
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=1.3e-12 Score=149.38 Aligned_cols=240 Identities=15% Similarity=0.100 Sum_probs=149.4
Q ss_pred ccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCC-CCh-hHHHHHHHHhccCCcccccccceeccccccccC
Q 010572 195 RESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCK-LSP-SFVEGICRSLCSKRKRIHKIENLSIDISSFIEN 272 (507)
Q Consensus 195 ~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~-ls~-~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~ 272 (507)
...+|++|+|+++..... .+..+.++++|++|+|++|. +++ ..+..+. .+...-.....++.|+++.+.+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~~~~~~l~~L~~L~Ls~N~L~~- 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLEE- 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCS----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHHHCTTTTTTCCEEECCSSCCCB-
T ss_pred cCCCCCEEECcCCCCCcc----ChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhhhcccccCCccEEEeeCCcCCc-
Confidence 566788999887743221 22334567889999999997 887 5555542 222000011357888887776531
Q ss_pred CCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCC-
Q 010572 273 CPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKS- 351 (507)
Q Consensus 273 ~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~- 351 (507)
++. ...+..+++|++|+|++|.+..- . . ....++|+.|+|++|.|+ .++. .+....+
T Consensus 563 ----ip~--~~~l~~L~~L~~L~Ls~N~l~~l-p-----~-~~~L~~L~~L~Ls~N~l~-~lp~--------~l~~l~~~ 620 (876)
T 4ecn_A 563 ----FPA--SASLQKMVKLGLLDCVHNKVRHL-E-----A-FGTNVKLTDLKLDYNQIE-EIPE--------DFCAFTDQ 620 (876)
T ss_dssp ----CCC--HHHHTTCTTCCEEECTTSCCCBC-C-----C-CCTTSEESEEECCSSCCS-CCCT--------TSCEECTT
T ss_pred ----cCC--hhhhhcCCCCCEEECCCCCcccc-h-----h-hcCCCcceEEECcCCccc-cchH--------HHhhcccc
Confidence 222 12577888999999999998832 2 2 245688999999999988 3332 4555556
Q ss_pred cCccccccchhHHHHHHhhhc----CCCcEEEeccCCCCchhHHHHHHhhc--CCCCCCEEeccCCCCChHHHHHHHhhC
Q 010572 352 LQSLRLLNLSHIAASLGKFFG----TSVQVLNIGAIGLGSSGFRVLQDGVT--KELKLVNINISKNRGGVETAKFLSKLM 425 (507)
Q Consensus 352 L~~L~ll~l~~~~~~L~~~l~----~~L~~L~Ls~n~l~~~G~~~L~~aL~--~n~~L~~LdLs~N~i~~~g~~~L~~~L 425 (507)
|+.|.+.+|. +. .++..+. .+|+.|+|++|.++...- .+...+. ...+|++|+|++|.++.-....+.
T Consensus 621 L~~L~Ls~N~-L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~--- 694 (876)
T 4ecn_A 621 VEGLGFSHNK-LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGINASTVTLSYNEIQKFPTELFA--- 694 (876)
T ss_dssp CCEEECCSSC-CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS-SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHH---
T ss_pred CCEEECcCCC-CC-cCchhhhccccCCCCEEECcCCcCCCccc-cchhhhccccCCCcCEEEccCCcCCccCHHHHc---
Confidence 7777777765 11 3444333 349999999999974320 1111111 234799999999999843333222
Q ss_pred CCCCCccEEEccCCCCChhHHHHHHHHHhc---CCCCccEEEecCCCC
Q 010572 426 PLAPELVEVNAGYNLMPLESLTIICSALKV---AKGHLQRLDLTGNNW 470 (507)
Q Consensus 426 ~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~---~~~~L~~LdL~~N~~ 470 (507)
..++|+.|+|++|.|+.-.. .+...... +..+|+.|+|++|.+
T Consensus 695 -~l~~L~~L~Ls~N~L~~ip~-~~~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 695 -TGSPISTIILSNNLMTSIPE-NSLKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp -TTCCCSEEECCSCCCSCCCT-TSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred -cCCCCCEEECCCCcCCccCh-HHhccccccccccCCccEEECCCCCC
Confidence 34789999999999983110 00000000 001799999999998
No 72
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.28 E-value=3.2e-13 Score=137.12 Aligned_cols=164 Identities=18% Similarity=0.062 Sum_probs=107.0
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc-cccCCchhhcccCCCcCccccccchhH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK-YDRSGPLFSLGAGKSLQSLRLLNLSHI 363 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~-~~~~~l~~~L~~~~~L~~L~ll~l~~~ 363 (507)
+..+++|++|+|++|.+..- .. .+ ...++|++|+|++|++.+.++. +........+...++|+.|.+.++. +
T Consensus 123 ~~~l~~L~~L~Ls~n~l~~l-p~----~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l 195 (328)
T 4fcg_A 123 MQQFAGLETLTLARNPLRAL-PA----SI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-I 195 (328)
T ss_dssp GGGGTTCSEEEEESCCCCCC-CG----GG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-C
T ss_pred HhccCCCCEEECCCCccccC-cH----HH-hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-c
Confidence 45677888888888888732 21 22 3457888888888777654432 1000111134445666666666554 1
Q ss_pred HHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCC
Q 010572 364 AASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLM 441 (507)
Q Consensus 364 ~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l 441 (507)
. .++..+. .+|++|+|++|.++.. ...+....+|++|+|++|.+....+ ..+...++|+.|+|++|.+
T Consensus 196 ~-~lp~~l~~l~~L~~L~L~~N~l~~l-----~~~l~~l~~L~~L~Ls~n~~~~~~p----~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 196 R-SLPASIANLQNLKSLKIRNSPLSAL-----GPAIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp C-CCCGGGGGCTTCCEEEEESSCCCCC-----CGGGGGCTTCCEEECTTCTTCCBCC----CCTTCCCCCCEEECTTCTT
T ss_pred C-cchHhhcCCCCCCEEEccCCCCCcC-----chhhccCCCCCEEECcCCcchhhhH----HHhcCCCCCCEEECCCCCc
Confidence 1 3333343 7899999999999842 2345667889999999998776533 2345567899999999887
Q ss_pred ChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 442 PLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 442 ~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
...-.. .+.. ..+|+.|+|++|.+
T Consensus 266 ~~~~p~----~~~~-l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 266 LLTLPL----DIHR-LTQLEKLDLRGCVN 289 (328)
T ss_dssp CCBCCT----TGGG-CTTCCEEECTTCTT
T ss_pred hhhcch----hhhc-CCCCCEEeCCCCCc
Confidence 643221 2333 36899999999987
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.28 E-value=1.1e-11 Score=134.41 Aligned_cols=177 Identities=19% Similarity=0.153 Sum_probs=104.2
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~ 365 (507)
...++|++|+|++|.+.+..... + ...++|++|+|++|.|++... +...+...++|+.|.+.+|. ...
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~----~-~~l~~L~~L~L~~N~l~~~~~------~~~~~~~l~~L~~L~l~~N~-l~~ 417 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG----C-STLKRLQTLILQRNGLKNFFK------VALMTKNMSSLETLDVSLNS-LNS 417 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT----C-CSCSSCCEEECCSSCCCBTTH------HHHTTTTCTTCCEEECTTSC-CBS
T ss_pred cCCCCceEEECCCCccccchhhh----h-cccCCCCEEECCCCCcCCccc------chhhhcCCCCCCEEECCCCc-CCC
Confidence 45567777777777776643321 1 345677777777777764110 01134555666666666554 111
Q ss_pred HHHh-hhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 366 SLGK-FFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 366 ~L~~-~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
.++. .+. ..|++|+|++|.++.... ..++ .+|++|+|++|.++. +...+...++|++|+|++|.|.
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~--~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVF----RCLP--PKVKVLDLHNNRIMS-----IPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGG----SSCC--TTCSEEECCSSCCCC-----CCTTTTSSCCCSEEECCSSCCC
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchh----hhhc--CcCCEEECCCCcCcc-----cChhhcCCCCCCEEECCCCCCC
Confidence 1111 122 678888888888864321 1121 579999999999873 2222335578999999999998
Q ss_pred hhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCe
Q 010572 443 LESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 443 ~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i 490 (507)
.-... ++.. ..+|+.|+|++|+|.-.-.....+..........
T Consensus 487 ~l~~~----~~~~-l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~ 529 (562)
T 3a79_B 487 SVPDG----VFDR-LTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 529 (562)
T ss_dssp CCCTT----STTT-CTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTT
T ss_pred CCCHH----HHhc-CCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCc
Confidence 42211 2333 3579999999999833333445555455554443
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.28 E-value=3.3e-12 Score=141.14 Aligned_cols=257 Identities=20% Similarity=0.128 Sum_probs=151.7
Q ss_pred ceeEEEEeccCcchhhh-hhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccC
Q 010572 174 HYARCLRLQNALCVEET-CQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSK 252 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~~-~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~ 252 (507)
..++.|+|....-.... ..+....+|++|+++++.... +.+..+.++++|++|+|++|.++.-....+ .
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~-- 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTF----A-- 94 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTT----T--
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhh----c--
Confidence 45777888642211111 123445678888887664321 111122355788888888887763211111 0
Q ss_pred CcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 253 RKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 253 ~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
....++.|+++.+.+.+.. ...+..+++|++|+|++|.+.+..... ....++|++|+|++|.|++
T Consensus 95 --~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 95 --FCTNLTELHLMSNSIQKIK--------NNPFVKQKNLITLDLSHNGLSSTKLGT-----QVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp --TCTTCSEEECCSSCCCCCC--------SCTTTTCTTCCEEECCSSCCSCCCCCS-----SSCCTTCCEEECCSSCCCC
T ss_pred --cCCCCCEEECCCCccCccC--------hhHccccCCCCEEECCCCcccccCchh-----hcccccCCEEEccCCcccc
Confidence 1134677777766543211 123566778888888888887654321 1345788888888888875
Q ss_pred cccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccC
Q 010572 333 WLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISK 410 (507)
Q Consensus 333 ~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~ 410 (507)
.... ......+.+|+.|.+.++. ..+..+..+. ..|+.|++++|.++......++..+. ..+|++|++++
T Consensus 160 ~~~~------~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~-~~~L~~L~L~~ 231 (680)
T 1ziw_A 160 LKSE------ELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA-NTSIRNLSLSN 231 (680)
T ss_dssp BCHH------HHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHT-TSCCCEEECTT
T ss_pred cCHH------HhhccccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhh-hccccEEEccC
Confidence 3221 0012233456666665553 1111112222 56788888888887666666665553 47899999999
Q ss_pred CCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 411 NRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 411 N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|.++......+... ..++|++|++++|.+...+.. ++.. ..+|+.|+|++|.+
T Consensus 232 n~l~~~~~~~~~~l--~~~~L~~L~Ls~n~l~~~~~~----~~~~-l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 232 SQLSTTSNTTFLGL--KWTNLTMLDLSYNNLNVVGND----SFAW-LPQLEYFFLEYNNI 284 (680)
T ss_dssp SCCCEECTTTTGGG--GGSCCCEEECTTSCCCEECTT----TTTT-CTTCCEEECCSCCB
T ss_pred CcccccChhHhhcc--CcCCCCEEECCCCCcCccCcc----cccC-cccccEeeCCCCcc
Confidence 99887665554432 124599999999999864422 2332 36899999999987
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.25 E-value=3.4e-12 Score=136.70 Aligned_cols=193 Identities=18% Similarity=0.164 Sum_probs=130.8
Q ss_pred CCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCC
Q 010572 223 NSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLD 302 (507)
Q Consensus 223 ~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~ 302 (507)
..++|++|+|++|.+++..+..+ .. ...++.|+++.|.+.+. .+ +..+++|++|+|++|.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~----~~----l~~L~~L~Ls~N~l~~~-----~~-----l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADL----AP----FTKLELLNLSSNVLYET-----LD-----LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGG----TT----CTTCCEEECTTSCCEEE-----EE-----CTTCTTCCEEECCSSEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHH----hC----CCCCCEEEeeCCCCCCC-----cc-----cccCCCCCEEEecCCcCC
Confidence 33478888888887775332221 11 13467777776654321 11 577899999999999997
Q ss_pred chHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEe
Q 010572 303 RDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNI 380 (507)
Q Consensus 303 ~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~L 380 (507)
+.. +.++|++|+|++|.|++.... ..++|+.|.+.+|. +.+..+..+. ++|++|+|
T Consensus 94 ~l~----------~~~~L~~L~L~~N~l~~~~~~-----------~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 94 ELL----------VGPSIETLHAANNNISRVSCS-----------RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp EEE----------ECTTCCEEECCSSCCCCEEEC-----------CCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEEC
T ss_pred CCC----------CCCCcCEEECcCCcCCCCCcc-----------ccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEEC
Confidence 632 238999999999999963321 23456777776664 1112222333 78999999
Q ss_pred ccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCc
Q 010572 381 GAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHL 460 (507)
Q Consensus 381 s~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L 460 (507)
++|.|+......+.. ...+|++|+|++|.++.. ......++|+.|+|++|.|+.-.. .+.. ..+|
T Consensus 152 s~N~l~~~~~~~l~~---~l~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~-l~~L 216 (487)
T 3oja_A 152 KLNEIDTVNFAELAA---SSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMGP-----EFQS-AAGV 216 (487)
T ss_dssp TTSCCCEEEGGGGGG---GTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEECG-----GGGG-GTTC
T ss_pred CCCCCCCcChHHHhh---hCCcccEEecCCCccccc------cccccCCCCCEEECCCCCCCCCCH-----hHcC-CCCc
Confidence 999998765333322 346899999999999865 123346789999999999986332 1332 2589
Q ss_pred cEEEecCCCC
Q 010572 461 QRLDLTGNNW 470 (507)
Q Consensus 461 ~~LdL~~N~~ 470 (507)
+.|+|++|.+
T Consensus 217 ~~L~Ls~N~l 226 (487)
T 3oja_A 217 TWISLRNNKL 226 (487)
T ss_dssp SEEECTTSCC
T ss_pred cEEEecCCcC
Confidence 9999999997
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.25 E-value=8e-12 Score=124.69 Aligned_cols=171 Identities=17% Similarity=0.052 Sum_probs=93.9
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIA 364 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~ 364 (507)
+..+++|++|+|++|.++..... ...++|++|+|++|.|+.. +. .+...++|+.|.+.+|. +.
T Consensus 51 ~~~l~~L~~L~L~~n~l~~~~~~-------~~l~~L~~L~Ls~N~l~~l-~~--------~~~~l~~L~~L~l~~N~-l~ 113 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRAELTKLQVD-------GTLPVLGTLDLSHNQLQSL-PL--------LGQTLPALTVLDVSFNR-LT 113 (290)
T ss_dssp GTTCTTCCEEECTTSCCCEEECC-------SCCTTCCEEECCSSCCSSC-CC--------CTTTCTTCCEEECCSSC-CC
T ss_pred hhcCCCCCEEECCCCccCcccCC-------CCCCcCCEEECCCCcCCcC-ch--------hhccCCCCCEEECCCCc-Cc
Confidence 34455555666665555543221 2235555666665555521 10 22333344444444432 00
Q ss_pred HHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 365 ASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 365 ~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
...+..+. .+|++|+|++|.|+... .+++....+|++|+|++|.++.-.. .++...++|+.|+|++|.|.
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGNELKTLP----PGLLTPTPKLEKLSLANNNLTELPA----GLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECTTSCCSCCCT----TTTTTCTTCCEEECCSSCCC
T ss_pred ccCHHHHcCCCCCCEEECCCCCCCccC----hhhcccccCCCEEECCCCcCCccCH----HHhcCcCCCCEEECCCCcCC
Confidence 00011122 67889999999987532 2234456789999999998874322 23445578999999999997
Q ss_pred hhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 443 LESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 443 ~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
.-. ..+... .+|+.|+|++|+|.-..+. ..+.....++
T Consensus 186 ~ip-----~~~~~~-~~L~~l~L~~Np~~C~c~~-~~l~~wl~~~ 223 (290)
T 1p9a_G 186 TIP-----KGFFGS-HLLPFAFLHGNPWLCNCEI-LYFRRWLQDN 223 (290)
T ss_dssp CCC-----TTTTTT-CCCSEEECCSCCBCCSGGG-HHHHHHHHHT
T ss_pred ccC-----hhhccc-ccCCeEEeCCCCccCcCcc-HHHHHHHHhC
Confidence 311 122222 4799999999998433333 3344444443
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.24 E-value=8.6e-12 Score=122.54 Aligned_cols=182 Identities=18% Similarity=0.167 Sum_probs=106.2
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
.++++|+|++|.++.-.... +. ....++.|+++.+.+.+ ++. .++..+++|++|+|++|.+...
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~----~~----~l~~L~~L~l~~n~l~~-----i~~---~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKA----FH----RLTKLRLLYLNDNKLQT-----LPA---GIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTS----SS----SCTTCCEEECCSSCCSC-----CCT---TTTSSCTTCCEEECCSSCCCCC
T ss_pred CCCCEEECcCCCCCeeCHHH----hc----CCCCCCEEECCCCccCe-----eCh---hhhcCCCCCCEEECCCCcCCcC
Confidence 46888888888765321110 00 01234555555444321 111 1234455666666666666543
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEecc
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGA 382 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~ 382 (507)
.... ....++|++|+|++|.|++..+ ..+. .+|++|+|++
T Consensus 101 ~~~~-----~~~l~~L~~L~l~~n~l~~~~~---------------------------------~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 101 PIGV-----FDQLVNLAELRLDRNQLKSLPP---------------------------------RVFDSLTKLTYLSLGY 142 (270)
T ss_dssp CTTT-----TTTCSSCCEEECCSSCCCCCCT---------------------------------TTTTTCTTCCEEECCS
T ss_pred CHhH-----cccccCCCEEECCCCccCeeCH---------------------------------HHhCcCcCCCEEECCC
Confidence 3211 1234566666666666654211 1111 6789999999
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccE
Q 010572 383 IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQR 462 (507)
Q Consensus 383 n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~ 462 (507)
|.|+.... .++....+|++|+|++|.++..... .+...++|++|+|++|.|..-.. .++.. ..+|+.
T Consensus 143 n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~----~~~~~-l~~L~~ 209 (270)
T 2o6q_A 143 NELQSLPK----GVFDKLTSLKELRLYNNQLKRVPEG----AFDKLTELKTLKLDNNQLKRVPE----GAFDS-LEKLKM 209 (270)
T ss_dssp SCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCCSCCCT----TTTTT-CTTCCE
T ss_pred CcCCccCH----hHccCCcccceeEecCCcCcEeChh----HhccCCCcCEEECCCCcCCcCCH----HHhcc-ccCCCE
Confidence 99876432 2244567899999999998764332 34455789999999999975332 12332 357999
Q ss_pred EEecCCCCCCC
Q 010572 463 LDLTGNNWELQ 473 (507)
Q Consensus 463 LdL~~N~~~~~ 473 (507)
|+|++|+|.-.
T Consensus 210 L~l~~N~~~c~ 220 (270)
T 2o6q_A 210 LQLQENPWDCT 220 (270)
T ss_dssp EECCSSCBCCS
T ss_pred EEecCCCeeCC
Confidence 99999998433
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.24 E-value=5.4e-13 Score=151.96 Aligned_cols=85 Identities=20% Similarity=0.150 Sum_probs=56.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|++|+|++|.|+.... .++....+|++|+|++|.++.... ..+...++|+.|++++|.|+.-... +
T Consensus 290 ~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~~----~ 357 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIAD----EAFYGLDNLQVLNLSYNLLGELYS----SNFYGLPKVAYIDLQKNHIAIIQDQ----T 357 (844)
T ss_dssp CCCCEEEEESCCCCEECT----TTTTTCSSCCEEEEESCCCSCCCS----CSCSSCTTCCEEECCSCCCCCCCSS----C
T ss_pred CCCCEEECCCCcCCCCCh----HHhcCCCCCCEEECCCCCCCccCH----HHhcCCCCCCEEECCCCCCCccChh----h
Confidence 667777777777765432 234445678888888888764322 2344557788889988888653321 2
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|+|++|.+
T Consensus 358 ~~~-l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 358 FKF-LEKLQTLDLRDNAL 374 (844)
T ss_dssp SCS-CCCCCEEEEETCCS
T ss_pred hcC-CCCCCEEECCCCCC
Confidence 322 36899999999987
No 79
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.23 E-value=3.6e-13 Score=134.29 Aligned_cols=206 Identities=17% Similarity=0.092 Sum_probs=136.5
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
++|++|+|++|.++.-. ...+.. ...++.|+++.+.+..... . ...+..+++|++|+|++|.+...
T Consensus 28 ~~l~~L~L~~n~l~~i~-~~~~~~-------l~~L~~L~L~~n~l~~~~~--~----~~~~~~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 28 SSATRLELESNKLQSLP-HGVFDK-------LTQLTKLSLSSNGLSFKGC--C----SQSDFGTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp TTCCEEECCSSCCCCCC-TTTTTT-------CTTCSEEECCSSCCCEEEE--E----EHHHHSCSCCCEEECCSCSEEEE
T ss_pred CCCCEEECCCCccCccC-HhHhhc-------cccCCEEECCCCccCcccC--c----ccccccccccCEEECCCCccccC
Confidence 58999999999887321 111111 2357788887766432111 0 12345689999999999998753
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEecc
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGA 382 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~ 382 (507)
.. .+ ...++|++|+|++|.+++.... ..+...++|+.|.+.++. .....+..+. .+|++|+|++
T Consensus 94 ~~-----~~-~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 94 SS-----NF-LGLEQLEHLDFQHSNLKQMSEF-------SVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp EE-----EE-ETCTTCCEEECTTSEEESSTTT-------TTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTT
T ss_pred hh-----hc-CCCCCCCEEECCCCcccccccc-------hhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCC
Confidence 22 22 3468999999999999853210 145556667777776654 1111222333 7899999999
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccE
Q 010572 383 IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQR 462 (507)
Q Consensus 383 n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~ 462 (507)
|.++... +...+....+|++|+|++|.++...+. .+...++|++|+|++|.+...... .+.. ..+|+.
T Consensus 160 n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~----~~~~-l~~L~~ 227 (306)
T 2z66_A 160 NSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTF----PYKC-LNSLQV 227 (306)
T ss_dssp CEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCSBCCSG----GGTT-CTTCCE
T ss_pred Ccccccc---chhHHhhCcCCCEEECCCCCcCCcCHH----HhcCCCCCCEEECCCCccCccChh----hccC-cccCCE
Confidence 9986421 223345567899999999999875443 344567899999999999864322 2332 368999
Q ss_pred EEecCCCC
Q 010572 463 LDLTGNNW 470 (507)
Q Consensus 463 LdL~~N~~ 470 (507)
|+|++|.+
T Consensus 228 L~L~~N~l 235 (306)
T 2z66_A 228 LDYSLNHI 235 (306)
T ss_dssp EECTTSCC
T ss_pred eECCCCCC
Confidence 99999997
No 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.22 E-value=1.3e-11 Score=131.22 Aligned_cols=203 Identities=15% Similarity=0.098 Sum_probs=120.5
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
+++.|++....-. .+..+....+|++|+++++.... + + ++.+++|++|+|++|.+++.. +..
T Consensus 43 ~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~Ls~n~l~~----~-~--~~~l~~L~~L~Ls~N~l~~~~-------~~~--- 104 (457)
T 3bz5_A 43 TLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNITT----L-D--LSQNTNLTYLACDSNKLTNLD-------VTP--- 104 (457)
T ss_dssp TCCEEECCSSCCC-CCTTGGGCTTCSEEECCSSCCSC----C-C--CTTCTTCSEEECCSSCCSCCC-------CTT---
T ss_pred CCCEEEccCCCcc-cChhhcccCCCCEEEccCCcCCe----E-c--cccCCCCCEEECcCCCCceee-------cCC---
Confidence 4677777642111 11233345577778877764322 1 1 345677888888888776531 111
Q ss_pred ccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcc
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l 334 (507)
...++.|+++.+.+.+. + +..+++|++|+|++|++.+.. + ...++|++|++++|...+.+
T Consensus 105 -l~~L~~L~L~~N~l~~l-----~------~~~l~~L~~L~l~~N~l~~l~-------l-~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 105 -LTKLTYLNCDTNKLTKL-----D------VSQNPLLTYLNCARNTLTEID-------V-SHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp -CTTCCEEECCSSCCSCC-----C------CTTCTTCCEEECTTSCCSCCC-------C-TTCTTCCEEECTTCSCCCCC
T ss_pred -CCcCCEEECCCCcCCee-----c------CCCCCcCCEEECCCCccceec-------c-ccCCcCCEEECCCCCccccc
Confidence 13466777766654321 1 456677888888888877631 1 34577888888877543321
Q ss_pred cccccCCchhhcccCCCcCccccccch-hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCC
Q 010572 335 SKYDRSGPLFSLGAGKSLQSLRLLNLS-HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKN 411 (507)
Q Consensus 335 ~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N 411 (507)
.+...++|+.|.+.++. .. ++ +. +.|++|++++|.++... +....+|++|+|++|
T Consensus 165 ----------~~~~l~~L~~L~ls~n~l~~---l~--l~~l~~L~~L~l~~N~l~~~~-------l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 165 ----------DVTPQTQLTTLDCSFNKITE---LD--VSQNKLLNRLNCDTNNITKLD-------LNQNIQLTFLDCSSN 222 (457)
T ss_dssp ----------CCTTCTTCCEEECCSSCCCC---CC--CTTCTTCCEEECCSSCCSCCC-------CTTCTTCSEEECCSS
T ss_pred ----------ccccCCcCCEEECCCCccce---ec--cccCCCCCEEECcCCcCCeec-------cccCCCCCEEECcCC
Confidence 23334455555555553 11 11 22 67888888888887642 445667888888888
Q ss_pred CCChHHHHHHHhhCCCCCCccEEEccCCCCChh
Q 010572 412 RGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE 444 (507)
Q Consensus 412 ~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~ 444 (507)
.++.-. +...++|+.|++++|.|+..
T Consensus 223 ~l~~ip-------~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 223 KLTEID-------VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCSCCC-------CTTCTTCSEEECCSSCCSCC
T ss_pred cccccC-------ccccCCCCEEEeeCCcCCCc
Confidence 877621 44556788888888888753
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.21 E-value=3.8e-13 Score=153.18 Aligned_cols=260 Identities=16% Similarity=0.106 Sum_probs=165.2
Q ss_pred cCceeEEEEeccCcchhh-hhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhc
Q 010572 172 FGHYARCLRLQNALCVEE-TCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLC 250 (507)
Q Consensus 172 ~~~~v~~L~L~~~l~~~~-~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~ 250 (507)
....++.|+|....-... ...+....+|++|+++++..... +-+..+.++++|++|+|++|.++...+..+ .
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~---i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~----~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT---IDKEAFRNLPNLRILDLGSSKIYFLHPDAF----Q 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE---ECTTTTSSCTTCCEEECTTCCCCEECTTSS----C
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc---cCHHHhcCCCCCCEEECCCCcCcccCHhHc----c
Confidence 335689999975221111 12345567899999988732111 101223577899999999999876433221 1
Q ss_pred cCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCC
Q 010572 251 SKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSI 330 (507)
Q Consensus 251 ~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L 330 (507)
....++.|+++.|.+.+... . ..++..+++|++|+|++|.+...+.. .. ....++|++|+|++|.|
T Consensus 95 ----~l~~L~~L~Ls~n~l~~~~~----~--~~~~~~L~~L~~L~Ls~N~l~~~~~~---~~-~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 95 ----GLFHLFELRLYFCGLSDAVL----K--DGYFRNLKALTRLDLSKNQIRSLYLH---PS-FGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp ----SCSSCCCEECTTCCCSSCCS----T--TCCCSSCSSCCEEEEESCCCCCCCCC---GG-GGTCSSCCEEEEESSCC
T ss_pred ----CCcccCEeeCcCCCCCcccc----c--CccccccCCCCEEECCCCcccccccc---hh-HhhCCCCCEEECCCCcC
Confidence 12357888888776533111 0 12367889999999999999875431 11 24569999999999999
Q ss_pred CCcccccccCCchhhcccC--CCcCccccccchhHHHHHHh-------hhc-CCCcEEEeccCCCCchhHHHHHHhhcC-
Q 010572 331 GGWLSKYDRSGPLFSLGAG--KSLQSLRLLNLSHIAASLGK-------FFG-TSVQVLNIGAIGLGSSGFRVLQDGVTK- 399 (507)
Q Consensus 331 ~~~l~~~~~~~l~~~L~~~--~~L~~L~ll~l~~~~~~L~~-------~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~- 399 (507)
++..+. .+... ++|+.|.+.++. ..+..+. .+. .+|++|+|++|.++......+...+..
T Consensus 161 ~~~~~~--------~l~~l~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 161 FLVCEH--------ELEPLQGKTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp CCCCSG--------GGHHHHHCSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred CeeCHH--------HcccccCCccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 864322 22222 456666665554 1111111 111 359999999999877655555443211
Q ss_pred ---------------------------------CCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHH
Q 010572 400 ---------------------------------ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL 446 (507)
Q Consensus 400 ---------------------------------n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~ 446 (507)
..+|++|+|++|.++.... ..+...++|+.|+|++|.++....
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS----RVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS----CCSSSCCCCCEEEEESCCCCEECT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh----hhhhcCCCCCEEECCCCcCCCCCh
Confidence 2469999999999876432 345566889999999999986432
Q ss_pred HHHHHHHhcCCCCccEEEecCCCC
Q 010572 447 TIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++.. ..+|+.|+|++|.+
T Consensus 308 ----~~~~~-l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 308 ----EAFYG-LDNLQVLNLSYNLL 326 (844)
T ss_dssp ----TTTTT-CSSCCEEEEESCCC
T ss_pred ----HHhcC-CCCCCEEECCCCCC
Confidence 23333 35899999999997
No 82
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.20 E-value=1.8e-12 Score=141.18 Aligned_cols=113 Identities=15% Similarity=0.083 Sum_probs=73.9
Q ss_pred hcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHH
Q 010572 345 SLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLS 422 (507)
Q Consensus 345 ~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~ 422 (507)
.+...++|+.|.+.++. .....+..+. ++|++|+|++|.++... +...+....+|++|+|++|.++...+.
T Consensus 419 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~--- 491 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQISWG--- 491 (606)
T ss_dssp TTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTT---
T ss_pred hhhccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCccChh---
Confidence 34445556666655554 1111222333 77888888888876421 223344567899999999999875443
Q ss_pred hhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 423 KLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 423 ~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+...++|++|+|++|.+...... ++.. ..+|+.|+|++|.+
T Consensus 492 -~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~-l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 492 -VFDTLHRLQLLNMSHNNLLFLDSS----HYNQ-LYSLSTLDCSFNRI 533 (606)
T ss_dssp -TTTTCTTCCEEECCSSCCSCEEGG----GTTT-CTTCCEEECTTSCC
T ss_pred -hhcccccCCEEECCCCcCCCcCHH----HccC-CCcCCEEECCCCcC
Confidence 344567899999999999864322 2332 35799999999998
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.19 E-value=4.9e-12 Score=137.06 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=34.7
Q ss_pred HHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 282 ~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
...+...++|++|+|+++.+.+.....+...+. .++|++|++++|.+++.
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ 291 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITER 291 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSC
T ss_pred HHHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeecc
Confidence 345667778888888888887777666655442 25788888888877753
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.17 E-value=2.9e-12 Score=125.96 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=83.6
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc-ccccccCCchhhcccCCCcCccccccch--
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW-LSKYDRSGPLFSLGAGKSLQSLRLLNLS-- 361 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~-l~~~~~~~l~~~L~~~~~L~~L~ll~l~-- 361 (507)
+..+++|++|++++|.+....... ....++|++|+|++|.|++. ++. .+...++|++|.+.++.
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~l~~--------~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFP-----IGHLKTLKELNVAHNLIQSFKLPE--------YFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCC-----CTTCTTCCEEECCSSCCCCCCCCG--------GGGGCTTCCEEECCSSCCC
T ss_pred hcCCccccEEECCCCCccccCchh-----cccCCCCCEEECcCCccceecCch--------hhccCCCCCEEECCCCCCC
Confidence 344556666666666655433211 12345566666666666531 111 34444445555554443
Q ss_pred -hHHHHHHhhhc-CCCc-EEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccC
Q 010572 362 -HIAASLGKFFG-TSVQ-VLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY 438 (507)
Q Consensus 362 -~~~~~L~~~l~-~~L~-~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~ 438 (507)
.....+..... ..+. +|++++|.++..... .....+|++|+|++|.++.... .++...++|+.|++++
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-----~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-----AFKEIRLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCEECTT-----SSCSCCEEEEECCSSCCSCCCT----TTTTTCCSCCEEECCS
T ss_pred cCCHHHhhhhhhccccceeeecCCCcccccCcc-----ccCCCcccEEECCCCceeecCH----hHhcccccccEEEccC
Confidence 00111111111 2233 899999999864321 2234479999999999885432 3345568899999999
Q ss_pred CCCChhH--HHHHHHHHhc
Q 010572 439 NLMPLES--LTIICSALKV 455 (507)
Q Consensus 439 N~l~~~g--~~~L~~aL~~ 455 (507)
|++..+. ...+...++.
T Consensus 234 N~~~c~c~~l~~l~~~~~~ 252 (276)
T 2z62_A 234 NPWDCSCPRIDYLSRWLNK 252 (276)
T ss_dssp SCBCCCTTTTHHHHHHHHH
T ss_pred CcccccCCchHHHHHHHHh
Confidence 9998543 4555555554
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.16 E-value=1.3e-10 Score=115.77 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=104.6
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
++|++|++++|.+..- + .+.. ...++.|+++.+.+.+ ++ . +..+++|++|+|++|.+.+-
T Consensus 46 ~~L~~L~l~~~~i~~~--~----~~~~----l~~L~~L~L~~n~l~~-----~~----~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--Q----GIQY----LPNVTKLFLNGNKLTD-----IK----P-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HTCCEEECTTSCCCCC--T----TGGG----CTTCCEEECCSSCCCC-----CG----G-GTTCTTCCEEECCSSCCCCG
T ss_pred CcccEEEccCCCcccC--h----hHhc----CCCCCEEEccCCccCC-----Cc----c-cccCCCCCEEECCCCcCCCC
Confidence 5678888888776532 1 1111 1235555555554322 11 1 45566666666666666553
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCC
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIG 384 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~ 384 (507)
. .+ ...++|++|+|++|.|++. . .+.. -.+|++|+|++|.
T Consensus 106 ~------~l-~~l~~L~~L~L~~n~i~~~-~---------~l~~-----------------------l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 106 S------SL-KDLKKLKSLSLEHNGISDI-N---------GLVH-----------------------LPQLESLYLGNNK 145 (291)
T ss_dssp G------GG-TTCTTCCEEECTTSCCCCC-G---------GGGG-----------------------CTTCCEEECCSSC
T ss_pred h------hh-ccCCCCCEEECCCCcCCCC-h---------hhcC-----------------------CCCCCEEEccCCc
Confidence 2 12 3346666666666666541 0 0111 1678889999998
Q ss_pred CCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEE
Q 010572 385 LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLD 464 (507)
Q Consensus 385 l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~Ld 464 (507)
++.. ..+....+|++|+|++|.+++... +...++|++|++++|.|++-. ++.. ..+|+.|+
T Consensus 146 l~~~------~~l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~L~~N~i~~l~------~l~~-l~~L~~L~ 206 (291)
T 1h6t_A 146 ITDI------TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDLR------ALAG-LKNLDVLE 206 (291)
T ss_dssp CCCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBCG------GGTT-CTTCSEEE
T ss_pred CCcc------hhhccCCCCCEEEccCCccccchh------hcCCCccCEEECCCCcCCCCh------hhcc-CCCCCEEE
Confidence 8764 345667789999999999877543 445678999999999998632 2443 36799999
Q ss_pred ecCCCC
Q 010572 465 LTGNNW 470 (507)
Q Consensus 465 L~~N~~ 470 (507)
|++|.+
T Consensus 207 l~~n~i 212 (291)
T 1h6t_A 207 LFSQEC 212 (291)
T ss_dssp EEEEEE
T ss_pred CcCCcc
Confidence 999986
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.16 E-value=2.3e-10 Score=114.86 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=106.4
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
++|++|++++|.+..- + .+.. ...++.|+++.+.+.+ ++ . +..+++|++|+|++|.+.+.
T Consensus 41 ~~L~~L~l~~~~i~~l--~----~~~~----l~~L~~L~L~~n~i~~-----~~----~-~~~l~~L~~L~L~~n~l~~~ 100 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI--E----GVQY----LNNLIGLELKDNQITD-----LA----P-LKNLTKITELELSGNPLKNV 100 (308)
T ss_dssp HTCCEEECTTSCCCCC--T----TGGG----CTTCCEEECCSSCCCC-----CG----G-GTTCCSCCEEECCSCCCSCC
T ss_pred CCcCEEEeeCCCccCc--h----hhhc----cCCCCEEEccCCcCCC-----Ch----h-HccCCCCCEEEccCCcCCCc
Confidence 4678888887766531 0 1111 1235555555544322 11 1 45556666666666666553
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEecc
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGA 382 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~ 382 (507)
. .+ ...++|++|+|++|.|++.. . +. ++|++|+|++
T Consensus 101 ~------~~-~~l~~L~~L~l~~n~l~~~~----------------------------------~-l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 101 S------AI-AGLQSIKTLDLTSTQITDVT----------------------------------P-LAGLSNLQVLYLDL 138 (308)
T ss_dssp G------GG-TTCTTCCEEECTTSCCCCCG----------------------------------G-GTTCTTCCEEECCS
T ss_pred h------hh-cCCCCCCEEECCCCCCCCch----------------------------------h-hcCCCCCCEEECCC
Confidence 2 12 23466666666666665310 0 11 6789999999
Q ss_pred CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccE
Q 010572 383 IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQR 462 (507)
Q Consensus 383 n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~ 462 (507)
|.++.... +....+|++|+|++|.+++... +...++|++|++++|.+++... +... .+|+.
T Consensus 139 n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~------l~~l-~~L~~ 199 (308)
T 1h6u_A 139 NQITNISP------LAGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISDISP------LASL-PNLIE 199 (308)
T ss_dssp SCCCCCGG------GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG------GGGC-TTCCE
T ss_pred CccCcCcc------ccCCCCccEEEccCCcCCCChh------hcCCCCCCEEECCCCccCcChh------hcCC-CCCCE
Confidence 99987543 5567889999999999987433 4566889999999999986442 4433 68999
Q ss_pred EEecCCCC
Q 010572 463 LDLTGNNW 470 (507)
Q Consensus 463 LdL~~N~~ 470 (507)
|+|++|.+
T Consensus 200 L~L~~N~l 207 (308)
T 1h6u_A 200 VHLKNNQI 207 (308)
T ss_dssp EECTTSCC
T ss_pred EEccCCcc
Confidence 99999997
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.15 E-value=7.7e-11 Score=115.94 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=55.2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
.+|++|+|++|.++.... ..+....+|++|+|++|.++.... ..+...++|++|++++|.|..... .+
T Consensus 133 ~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~ 200 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPK----GVFDKLTNLTELDLSYNQLQSLPE----GVFDKLTQLKDLRLYQNQLKSVPD----GV 200 (272)
T ss_dssp TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TT
T ss_pred CCCCEEECCCCccCccCH----HHhccCccCCEEECCCCCcCccCH----HHhcCCccCCEEECCCCcCCccCH----HH
Confidence 567888888888764331 223445678888888888775432 223445678888888888874322 12
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|+|++|.+
T Consensus 201 ~~~-l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 201 FDR-LTSLQYIWLHDNPW 217 (272)
T ss_dssp TTT-CTTCCEEECCSSCB
T ss_pred HhC-CcCCCEEEccCCCc
Confidence 232 35788888888887
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.14 E-value=3.5e-11 Score=116.84 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=103.7
Q ss_pred CccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchH
Q 010572 226 TLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDF 305 (507)
Q Consensus 226 ~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g 305 (507)
..++++++++.++.- +. .. ...++.|+++.+.+.... ...+..+++|++|+|++|.+.+..
T Consensus 15 ~~~~l~~~~~~l~~~-p~---------~~-~~~l~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 15 GKKEVDCQGKSLDSV-PS---------GI-PADTEKLDLQSTGLATLS--------DATFRGLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp GGTEEECTTCCCSSC-CS---------CC-CTTCCEEECTTSCCCCCC--------TTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCeEEecCCCCcccc-CC---------CC-CCCCCEEEccCCCcCccC--------HhHhcCcccCCEEECCCCcCCccC
Confidence 456677777665420 00 01 124666766666543211 123556777777777777777654
Q ss_pred HHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCC
Q 010572 306 GRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGL 385 (507)
Q Consensus 306 ~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l 385 (507)
... ....++|++|+|++|.|++.... .+... .+|++|+|++|.|
T Consensus 76 ~~~-----~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l-----------------------~~L~~L~L~~N~l 119 (251)
T 3m19_A 76 AGV-----FDDLTELGTLGLANNQLASLPLG--------VFDHL-----------------------TQLDKLYLGGNQL 119 (251)
T ss_dssp TTT-----TTTCTTCCEEECTTSCCCCCCTT--------TTTTC-----------------------TTCCEEECCSSCC
T ss_pred HhH-----hccCCcCCEEECCCCcccccChh--------Hhccc-----------------------CCCCEEEcCCCcC
Confidence 321 13457777777777777642211 11111 5677888888887
Q ss_pred CchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEe
Q 010572 386 GSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDL 465 (507)
Q Consensus 386 ~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL 465 (507)
+.... ..+....+|++|+|++|.++.... ..+...++|++|+|++|.|..... .++.. ..+|+.|+|
T Consensus 120 ~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~-l~~L~~L~l 186 (251)
T 3m19_A 120 KSLPS----GVFDRLTKLKELRLNTNQLQSIPA----GAFDKLTNLQTLSLSTNQLQSVPH----GAFDR-LGKLQTITL 186 (251)
T ss_dssp CCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTT-CTTCCEEEC
T ss_pred CCcCh----hHhccCCcccEEECcCCcCCccCH----HHcCcCcCCCEEECCCCcCCccCH----HHHhC-CCCCCEEEe
Confidence 64321 123445678888888888765332 234445678888888888874322 12332 257888888
Q ss_pred cCCCCC
Q 010572 466 TGNNWE 471 (507)
Q Consensus 466 ~~N~~~ 471 (507)
++|.+.
T Consensus 187 ~~N~~~ 192 (251)
T 3m19_A 187 FGNQFD 192 (251)
T ss_dssp CSCCBC
T ss_pred eCCcee
Confidence 888873
No 89
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.14 E-value=3e-12 Score=137.88 Aligned_cols=169 Identities=16% Similarity=0.116 Sum_probs=98.1
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~ 365 (507)
..+++|++|+|++|.+...... ....++|++|+|++|.+++..+. ..+...++|+.|.+.++. ...
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~-------~~~~~l~~L~~L~l~~n~-l~~ 435 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSN------FLGLEQLEHLDFQHSNLKQMSEF-------SVFLSLRNLIYLDISHTH-TRV 435 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEE------EETCTTCCEEECTTSEEESCTTS-------CTTTTCTTCCEEECTTSC-CEE
T ss_pred cccCccCEEECCCCcccccccc------ccccCCCCEEEccCCccccccch-------hhhhcCCCCCEEeCcCCc-ccc
Confidence 3444555555555554432211 12234555555555555432110 134455566666665553 111
Q ss_pred HHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 366 SLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 366 ~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
..+..+. ++|++|+|++|.+++.. +...+....+|++|+|++|.++...+.. +...++|++|++++|.+..
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSC
T ss_pred cchhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccccCChhh----hhcccCCCEEeCCCCcCCC
Confidence 1222333 78999999999886321 2234555678999999999998765443 4455789999999999976
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHH
Q 010572 444 ESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSML 480 (507)
Q Consensus 444 ~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l 480 (507)
... +++.. ..+|+.|+|++|++.-.-.....+
T Consensus 509 ~~~----~~~~~-l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 509 VPD----GIFDR-LTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CCT----TTTTT-CTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCH----HHhhc-ccCCcEEEecCCcccCCCcchHHH
Confidence 432 12333 368999999999983333333444
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.12 E-value=3.5e-11 Score=118.14 Aligned_cols=217 Identities=13% Similarity=0.050 Sum_probs=138.2
Q ss_pred ccccccccccccceecccCceeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeec
Q 010572 155 MNHLACDYSKLSYHCQQFGHYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLH 234 (507)
Q Consensus 155 ~~c~~~~l~~l~~~c~~~~~~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~ 234 (507)
++|.| .+..|.-.. ..+.+++...--. .+.... ...+++|+++++... .+.+..+.++++|++|+|++
T Consensus 3 ~~C~~-----~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~-~~~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~ 70 (270)
T 2o6q_A 3 ALCKK-----DGGVCSCNN-NKNSVDCSSKKLT-AIPSNI-PADTKKLDLQSNKLS----SLPSKAFHRLTKLRLLYLND 70 (270)
T ss_dssp CCBGG-----GTCSBEEET-TTTEEECTTSCCS-SCCSCC-CTTCSEEECCSSCCS----CCCTTSSSSCTTCCEEECCS
T ss_pred ccCCC-----CCCCCEeCC-CCCEEEccCCCCC-ccCCCC-CCCCCEEECcCCCCC----eeCHHHhcCCCCCCEEECCC
Confidence 67888 355554322 2455666531110 111111 146899999887432 12122235678999999999
Q ss_pred CCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhc
Q 010572 235 CKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLL 314 (507)
Q Consensus 235 ~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~ 314 (507)
|.++.-... + +. ....++.|+++.+.+.+. + ...+..+++|++|+|++|.+....... .
T Consensus 71 n~l~~i~~~-~---~~----~l~~L~~L~l~~n~l~~~-----~---~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~ 129 (270)
T 2o6q_A 71 NKLQTLPAG-I---FK----ELKNLETLWVTDNKLQAL-----P---IGVFDQLVNLAELRLDRNQLKSLPPRV-----F 129 (270)
T ss_dssp SCCSCCCTT-T---TS----SCTTCCEEECCSSCCCCC-----C---TTTTTTCSSCCEEECCSSCCCCCCTTT-----T
T ss_pred CccCeeChh-h---hc----CCCCCCEEECCCCcCCcC-----C---HhHcccccCCCEEECCCCccCeeCHHH-----h
Confidence 988632111 0 01 123578888887765432 1 124577899999999999998865432 2
Q ss_pred cCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHH
Q 010572 315 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQ 394 (507)
Q Consensus 315 ~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~ 394 (507)
...++|++|+|++|.|++.... .+... .+|++|+|++|.|+....
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l-----------------------~~L~~L~L~~n~l~~~~~---- 174 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKG--------VFDKL-----------------------TSLKELRLYNNQLKRVPE---- 174 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT--------TTTTC-----------------------TTCCEEECCSSCCSCCCT----
T ss_pred CcCcCCCEEECCCCcCCccCHh--------HccCC-----------------------cccceeEecCCcCcEeCh----
Confidence 4569999999999999853211 11111 568899999999876442
Q ss_pred HhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 395 DGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 395 ~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
.++....+|++|+|++|.++.... .++...++|+.|+|++|++.-
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPE----GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCH----HHhccccCCCEEEecCCCeeC
Confidence 234456789999999999875433 234456789999999999864
No 91
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.11 E-value=1.7e-10 Score=122.57 Aligned_cols=180 Identities=17% Similarity=0.064 Sum_probs=102.1
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
.++.|++....-.+ + ++....+|++|+++++.... + + ++++++|++|+|++|.+++-. +..
T Consensus 65 ~L~~L~Ls~n~l~~-~-~~~~l~~L~~L~Ls~N~l~~----~-~--~~~l~~L~~L~L~~N~l~~l~-------~~~--- 125 (457)
T 3bz5_A 65 GLTKLICTSNNITT-L-DLSQNTNLTYLACDSNKLTN----L-D--VTPLTKLTYLNCDTNKLTKLD-------VSQ--- 125 (457)
T ss_dssp TCSEEECCSSCCSC-C-CCTTCTTCSEEECCSSCCSC----C-C--CTTCTTCCEEECCSSCCSCCC-------CTT---
T ss_pred CCCEEEccCCcCCe-E-ccccCCCCCEEECcCCCCce----e-e--cCCCCcCCEEECCCCcCCeec-------CCC---
Confidence 46677776421111 1 22334567777777764322 1 1 345677888888887776521 111
Q ss_pred ccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC-CCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH-LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~-L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
...++.|+++.+.+.+. -+..+++|++|++++|. ++... ....++|++|+|++|.|++.
T Consensus 126 -l~~L~~L~l~~N~l~~l-----------~l~~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 126 -NPLLTYLNCARNTLTEI-----------DVSHNTQLTELDCHLNKKITKLD--------VTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp -CTTCCEEECTTSCCSCC-----------CCTTCTTCCEEECTTCSCCCCCC--------CTTCTTCCEEECCSSCCCCC
T ss_pred -CCcCCEEECCCCcccee-----------ccccCCcCCEEECCCCCcccccc--------cccCCcCCEEECCCCcccee
Confidence 13466777666654331 14566778888888874 33321 13457788888888877751
Q ss_pred ccccccCCchhhcccCCCcCccccccch-hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccC
Q 010572 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLS-HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISK 410 (507)
Q Consensus 334 l~~~~~~~l~~~L~~~~~L~~L~ll~l~-~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~ 410 (507)
.+..+++|+.|.+.++. ... .+. +.|++|+|++|+++... +....+|++|++++
T Consensus 186 -----------~l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~ip-------~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 186 -----------DVSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTEID-------VTPLTQLTYFDCSV 242 (457)
T ss_dssp -----------CCTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCS
T ss_pred -----------ccccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccccC-------ccccCCCCEEEeeC
Confidence 13334455555555543 110 122 67788888888776532 34456678888888
Q ss_pred CCCChH
Q 010572 411 NRGGVE 416 (507)
Q Consensus 411 N~i~~~ 416 (507)
|.++..
T Consensus 243 N~l~~~ 248 (457)
T 3bz5_A 243 NPLTEL 248 (457)
T ss_dssp SCCSCC
T ss_pred CcCCCc
Confidence 877653
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.09 E-value=2.4e-10 Score=110.97 Aligned_cols=191 Identities=13% Similarity=0.064 Sum_probs=127.3
Q ss_pred cCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcch
Q 010572 199 LQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVV 278 (507)
Q Consensus 199 L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~ 278 (507)
.++++++++... .+-.. -..++++|+|++|.+++.....+ . ....++.|+++.+.+.+..
T Consensus 16 ~~~l~~~~~~l~----~~p~~---~~~~l~~L~L~~n~l~~~~~~~~----~----~l~~L~~L~L~~n~l~~~~----- 75 (251)
T 3m19_A 16 KKEVDCQGKSLD----SVPSG---IPADTEKLDLQSTGLATLSDATF----R----GLTKLTWLNLDYNQLQTLS----- 75 (251)
T ss_dssp GTEEECTTCCCS----SCCSC---CCTTCCEEECTTSCCCCCCTTTT----T----TCTTCCEEECTTSCCCCCC-----
T ss_pred CeEEecCCCCcc----ccCCC---CCCCCCEEEccCCCcCccCHhHh----c----CcccCCEEECCCCcCCccC-----
Confidence 366777766322 11111 12579999999999876433221 1 1245888888877754321
Q ss_pred HHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccc
Q 010572 279 VELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLL 358 (507)
Q Consensus 279 ~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll 358 (507)
...+..+++|++|+|++|++....... ....++|++|+|++|.|++.... .+...
T Consensus 76 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l--------- 130 (251)
T 3m19_A 76 ---AGVFDDLTELGTLGLANNQLASLPLGV-----FDHLTQLDKLYLGGNQLKSLPSG--------VFDRL--------- 130 (251)
T ss_dssp ---TTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCTT--------TTTTC---------
T ss_pred ---HhHhccCCcCCEEECCCCcccccChhH-----hcccCCCCEEEcCCCcCCCcChh--------HhccC---------
Confidence 234677899999999999998755432 24568999999999999853221 11111
Q ss_pred cchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccC
Q 010572 359 NLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGY 438 (507)
Q Consensus 359 ~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~ 438 (507)
.+|++|+|++|+|+.... .++....+|++|+|++|.++.... ..+...++|+.|+|++
T Consensus 131 --------------~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 131 --------------TKLKELRLNTNQLQSIPA----GAFDKLTNLQTLSLSTNQLQSVPH----GAFDRLGKLQTITLFG 188 (251)
T ss_dssp --------------TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS
T ss_pred --------------CcccEEECcCCcCCccCH----HHcCcCcCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeC
Confidence 568999999999985432 234556789999999999886443 3445567899999999
Q ss_pred CCCChh--HHHHHHHHHhcC
Q 010572 439 NLMPLE--SLTIICSALKVA 456 (507)
Q Consensus 439 N~l~~~--g~~~L~~aL~~~ 456 (507)
|.+..+ ....+..-++.+
T Consensus 189 N~~~c~~~~~~~l~~~~~~~ 208 (251)
T 3m19_A 189 NQFDCSRCEILYLSQWIREN 208 (251)
T ss_dssp CCBCTTSTTHHHHHHHHHHS
T ss_pred CceeCCccccHHHHHHHHhc
Confidence 999765 344455555544
No 93
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.08 E-value=6.3e-10 Score=122.77 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=63.4
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
++|++|+|++|.|+... ....+|++|+|++|.|+.-. . ..++|+.|+|++|.|..- ...
T Consensus 221 ~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp-----~---~~~~L~~L~Ls~N~L~~l-----p~~ 279 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLP-----M---LPSGLLSLSVYRNQLTRL-----PES 279 (622)
T ss_dssp TTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCC-----C---CCTTCCEEECCSSCCCSC-----CGG
T ss_pred CCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCC-----c---ccccCcEEeCCCCCCCcC-----CHH
Confidence 67999999999987632 22367999999999987421 1 346799999999999832 123
Q ss_pred HhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 453 LKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
+... .+|+.|+|++|.+ .......+..+..
T Consensus 280 l~~l-~~L~~L~L~~N~l--~~~~~~~l~~L~~ 309 (622)
T 3g06_A 280 LIHL-SSETTVNLEGNPL--SERTLQALREITS 309 (622)
T ss_dssp GGGS-CTTCEEECCSCCC--CHHHHHHHHHHHH
T ss_pred Hhhc-cccCEEEecCCCC--CCcCHHHHHhccc
Confidence 4433 6799999999996 5555555555554
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.08 E-value=1.4e-10 Score=114.05 Aligned_cols=193 Identities=15% Similarity=0.070 Sum_probs=108.5
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
...|++|+++++... .+.+ +..+++|++|+|++|.+++-. .+.. ...++.|.++.+.+.+.
T Consensus 40 l~~L~~L~l~~~~i~-~~~~-----l~~l~~L~~L~l~~n~l~~~~------~l~~----l~~L~~L~L~~n~l~~~--- 100 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQG-----IQYLPNVRYLALGGNKLHDIS------ALKE----LTNLTYLILTGNQLQSL--- 100 (272)
T ss_dssp HTTCCEEECTTSCCC-CCTT-----GGGCTTCCEEECTTSCCCCCG------GGTT----CTTCCEEECTTSCCCCC---
T ss_pred ccceeeeeeCCCCcc-cccc-----cccCCCCcEEECCCCCCCCch------hhcC----CCCCCEEECCCCccCcc---
Confidence 455666776655321 1111 234567777777777665411 1111 12355555554443221
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
+ ...+..+++|++|+|++|++....... ....++|++|+|++|.|++..+
T Consensus 101 --~---~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~-------------------- 150 (272)
T 3rfs_A 101 --P---NGVFDKLTNLKELVLVENQLQSLPDGV-----FDKLTNLTYLNLAHNQLQSLPK-------------------- 150 (272)
T ss_dssp --C---TTTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCT--------------------
T ss_pred --C---hhHhcCCcCCCEEECCCCcCCccCHHH-----hccCCCCCEEECCCCccCccCH--------------------
Confidence 0 112344555666666666655433211 1233556666666665553211
Q ss_pred ccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccE
Q 010572 356 RLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVE 433 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~ 433 (507)
..+. .+|++|+|++|.++.... ..+....+|++|+|++|.++.... ..+...++|+.
T Consensus 151 -------------~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~ 209 (272)
T 3rfs_A 151 -------------GVFDKLTNLTELDLSYNQLQSLPE----GVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQY 209 (272)
T ss_dssp -------------TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCE
T ss_pred -------------HHhccCccCCEEECCCCCcCccCH----HHhcCCccCCEEECCCCcCCccCH----HHHhCCcCCCE
Confidence 1111 678999999999985432 224456789999999999886433 34455688999
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 434 VNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 434 L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|++++|.+... ...|+.|++..|.+
T Consensus 210 L~l~~N~~~~~------------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 210 IWLHDNPWDCT------------CPGIRYLSEWINKH 234 (272)
T ss_dssp EECCSSCBCCC------------TTTTHHHHHHHHHT
T ss_pred EEccCCCcccc------------CcHHHHHHHHHHhC
Confidence 99999998632 13577777777765
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.08 E-value=2.3e-10 Score=107.10 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=86.4
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIA 364 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~ 364 (507)
+..+++|++|+|++|.+.+-. .+ ...++|++|+|++|.|++.... .++..
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~------~l-~~l~~L~~L~l~~n~l~~~~~~--------~l~~l--------------- 111 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN------PI-SGLSNLERLRIMGKDVTSDKIP--------NLSGL--------------- 111 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG------GG-TTCTTCCEEEEECTTCBGGGSC--------CCTTC---------------
T ss_pred HhcCCCCCEEEccCCCCCcch------hh-hcCCCCCEEEeECCccCcccCh--------hhcCC---------------
Confidence 345677888888888776542 12 3457888888888888752221 11111
Q ss_pred HHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 365 ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 365 ~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
++|++|+|++|.+++.+... +....+|++|+|++|. +++.. .+...++|+.|++++|.+++
T Consensus 112 --------~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 112 --------TSLTLLDISHSAHDDSILTK----INTLPKVNSIDLSYNGAITDIM------PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp --------TTCCEEECCSSBCBGGGHHH----HTTCSSCCEEECCSCTBCCCCG------GGGGCSSCCEEECTTBCCCC
T ss_pred --------CCCCEEEecCCccCcHhHHH----HhhCCCCCEEEccCCCCccccH------hhcCCCCCCEEECCCCCCcC
Confidence 56788888888888755443 3456788899998887 76641 34455788999999998876
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 444 ESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 444 ~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
-. .+... .+|+.|++++|++
T Consensus 174 ~~------~l~~l-~~L~~L~l~~N~i 193 (197)
T 4ezg_A 174 YR------GIEDF-PKLNQLYAFSQTI 193 (197)
T ss_dssp CT------TGGGC-SSCCEEEECBC--
T ss_pred hH------HhccC-CCCCEEEeeCccc
Confidence 32 33333 5789999998886
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.07 E-value=1.6e-10 Score=108.13 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=96.5
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
.+++|++|++++|.+.+-. ++ ...++|++|+|++|.++..- .+..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~------~l-~~l~~L~~L~l~~n~~~~~~----------~l~~------------------ 86 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT------GI-EYAHNIKDLTINNIHATNYN----------PISG------------------ 86 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT------TG-GGCTTCSEEEEESCCCSCCG----------GGTT------------------
T ss_pred hcCCccEEeccCCCccChH------HH-hcCCCCCEEEccCCCCCcch----------hhhc------------------
Confidence 3468999999999998632 12 34589999999999776410 1100
Q ss_pred HHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCC-CChhH
Q 010572 367 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNL-MPLES 445 (507)
Q Consensus 367 L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~-l~~~g 445 (507)
-+.|++|+|++|.++..+... +....+|++|+|++|.+++.++..++ ..++|++|++++|. +++-.
T Consensus 87 -----l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~----~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 87 -----LSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKIN----TLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp -----CTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHT----TCSSCCEEECCSCTBCCCCG
T ss_pred -----CCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHh----hCCCCCEEEccCCCCccccH
Confidence 157899999999998654332 44567899999999999987777665 45789999999998 87642
Q ss_pred HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 446 LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 446 ~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+... .+|+.|+|++|.+
T Consensus 154 ------~l~~l-~~L~~L~l~~n~i 171 (197)
T 4ezg_A 154 ------PLKTL-PELKSLNIQFDGV 171 (197)
T ss_dssp ------GGGGC-SSCCEEECTTBCC
T ss_pred ------hhcCC-CCCCEEECCCCCC
Confidence 34443 6899999999997
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.06 E-value=4.8e-10 Score=123.36 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=58.5
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
.+|+.|+|++|.|+.. ..+....+|++|+|++|.+++... +...++|+.|+|++|.|++- ..
T Consensus 131 ~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~i~~l------~~ 192 (605)
T 1m9s_A 131 PQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDL------RA 192 (605)
T ss_dssp TTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBC------GG
T ss_pred CccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCchh------hccCCCCCEEECcCCCCCCC------hH
Confidence 6788888888888764 345667788889998888876543 44557888899998888763 12
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|+|++|.+
T Consensus 193 l~~-l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 193 LAG-LKNLDVLELFSQEC 209 (605)
T ss_dssp GTT-CTTCSEEECCSEEE
T ss_pred Hcc-CCCCCEEEccCCcC
Confidence 443 35788888888876
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.04 E-value=2.1e-10 Score=112.78 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=83.1
Q ss_pred HhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHH
Q 010572 285 LSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIA 364 (507)
Q Consensus 285 L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~ 364 (507)
+..+++|++|+|++|++.+... + ...++|++|+|++|.|++.-.
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~------l-~~l~~L~~L~L~~N~l~~l~~----------------------------- 102 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP------L-KDLTKLEELSVNRNRLKNLNG----------------------------- 102 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG------G-TTCSSCCEEECCSSCCSCCTT-----------------------------
T ss_pred HhhCCCCCEEECCCCccCCChh------h-ccCCCCCEEECCCCccCCcCc-----------------------------
Confidence 4555666666666666665433 1 234666666666666654100
Q ss_pred HHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh
Q 010572 365 ASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE 444 (507)
Q Consensus 365 ~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~ 444 (507)
+ ...+|++|+|++|.|+.. ..+....+|++|+|++|.+++.. .+...++|+.|+|++|.|.+.
T Consensus 103 --~---~~~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~------~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 103 --I---PSACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp --C---CCSSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG------GGGGCTTCCEEECTTSCCCBC
T ss_pred --c---ccCcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh------HHccCCCCCEEECCCCcCcch
Confidence 0 015678888888888764 23556778899999999887642 344557889999999988865
Q ss_pred HHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 445 SLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 445 g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
..+.. ..+|+.|+|++|.+
T Consensus 166 ------~~l~~-l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 ------GGLTR-LKKVNWIDLTGQKC 184 (263)
T ss_dssp ------TTSTT-CCCCCEEEEEEEEE
T ss_pred ------HHhcc-CCCCCEEeCCCCcc
Confidence 23443 35788999988886
No 99
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.01 E-value=2.6e-11 Score=130.55 Aligned_cols=185 Identities=15% Similarity=0.099 Sum_probs=126.2
Q ss_pred CCCCccEEEeecCCCChhH--HHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCC
Q 010572 223 NSETLASLEFLHCKLSPSF--VEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCH 300 (507)
Q Consensus 223 ~~~~L~~LdLs~~~ls~~~--~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~ 300 (507)
.+++|++|++++|.++... ...+ .. ...++.|+++.+.+.+ ++ ..+..+++|++|+|++|.
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~-~~-------~~~L~~L~l~~n~l~~-----~~----~~~~~l~~L~~L~l~~n~ 407 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSD-FG-------TTSLKYLDLSFNGVIT-----MS----SNFLGLEQLEHLDFQHSN 407 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHH-HT-------CSCCCEEECCSCSEEE-----EE----EEEETCTTCCEEECTTSE
T ss_pred cCCCCCEEeCcCCccCccccccccc-cc-------cCccCEEECCCCcccc-----cc----ccccccCCCCEEEccCCc
Confidence 4567888888888776432 1111 11 1346777777665432 11 115678999999999999
Q ss_pred CCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEE
Q 010572 301 LDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVL 378 (507)
Q Consensus 301 L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L 378 (507)
+.+..... .....++|++|+|++|.+++..+. .+...++|+.|.+.++.-..+.++..+. ++|++|
T Consensus 408 l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 408 LKQMSEFS----VFLSLRNLIYLDISHTHTRVAFNG--------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp EESCTTSC----TTTTCTTCCEEECTTSCCEECCTT--------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred cccccchh----hhhcCCCCCEEeCcCCcccccchh--------hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 87754311 124568999999999999864432 5566677888877777511123334444 889999
Q ss_pred EeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh
Q 010572 379 NIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE 444 (507)
Q Consensus 379 ~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~ 444 (507)
+|++|.++..+. ..+....+|++|+|++|.++.... ..+...++|+.|++++|++..+
T Consensus 476 ~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 476 DLSQCQLEQLSP----TAFNSLSSLQVLNMASNQLKSVPD----GIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp ECTTSCCCEECT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBCCC
T ss_pred ECCCCccccCCh----hhhhcccCCCEEeCCCCcCCCCCH----HHhhcccCCcEEEecCCcccCC
Confidence 999999986532 234556789999999999987543 2445668899999999999753
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.98 E-value=1.4e-10 Score=126.70 Aligned_cols=95 Identities=16% Similarity=0.002 Sum_probs=53.8
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHh-hCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSK-LMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~-~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
++|++|+|++|.|+.... +. .+|++|+|++|.|+.-.. +.. +....+.|+.|+|++|.|+. |..
T Consensus 160 ~~L~~L~Ls~N~L~~lp~------l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~-----lp~ 224 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTFLPE------LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITH-----IPE 224 (571)
T ss_dssp TTCCEEECCSSCCSCCCC------CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCC-----CCG
T ss_pred CCcCEEECCCCCCCCcch------hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCccee-----cCH
Confidence 567888888888765332 22 678888888887763211 111 11111223888888888873 112
Q ss_pred HHhcCCCCccEEEecCCCCCCCccHHHHHHHHHH
Q 010572 452 ALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRH 485 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~ 485 (507)
.+.. ..+|+.|+|++|.+ ....-..+..+..
T Consensus 225 ~l~~-l~~L~~L~L~~N~l--~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 225 NILS-LDPTCTIILEDNPL--SSRIRESLSQQTA 255 (571)
T ss_dssp GGGG-SCTTEEEECCSSSC--CHHHHHHHHHHHH
T ss_pred HHhc-CCCCCEEEeeCCcC--CCcCHHHHHHhhc
Confidence 2322 35688888888875 4444555555444
No 101
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.97 E-value=5.4e-10 Score=111.32 Aligned_cols=190 Identities=13% Similarity=-0.005 Sum_probs=105.2
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..++.|+++++.... +.+..+.++.+|++|+|++|.++.-... .....++.|+++.+.+..
T Consensus 31 ~~l~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------~~l~~L~~L~Ls~N~l~~----- 91 (290)
T 1p9a_G 31 KDTTILHLSENLLYT----FSLATLMPYTRLTQLNLDRAELTKLQVD----------GTLPVLGTLDLSHNQLQS----- 91 (290)
T ss_dssp TTCCEEECTTSCCSE----EEGGGGTTCTTCCEEECTTSCCCEEECC----------SCCTTCCEEECCSSCCSS-----
T ss_pred CCCCEEEcCCCcCCc----cCHHHhhcCCCCCEEECCCCccCcccCC----------CCCCcCCEEECCCCcCCc-----
Confidence 356777777664321 1111234556777777777766531110 001235555555444321
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccc
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLR 356 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ 356 (507)
+ ...+..+++|++|+|++|+|+...... +...++|++|+|++|.|++..+
T Consensus 92 l----~~~~~~l~~L~~L~l~~N~l~~l~~~~-----~~~l~~L~~L~L~~N~l~~~~~--------------------- 141 (290)
T 1p9a_G 92 L----PLLGQTLPALTVLDVSFNRLTSLPLGA-----LRGLGELQELYLKGNELKTLPP--------------------- 141 (290)
T ss_dssp C----CCCTTTCTTCCEEECCSSCCCCCCSST-----TTTCTTCCEEECTTSCCCCCCT---------------------
T ss_pred C----chhhccCCCCCEEECCCCcCcccCHHH-----HcCCCCCCEEECCCCCCCccCh---------------------
Confidence 1 112344555666666666655432211 1233556666666666553211
Q ss_pred cccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEE
Q 010572 357 LLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEV 434 (507)
Q Consensus 357 ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L 434 (507)
..+. .+|++|+|++|+|+.... +++....+|++|+|++|.++. +...+...++|+.|
T Consensus 142 ------------~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 142 ------------GLLTPTPKLEKLSLANNNLTELPA----GLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFA 200 (290)
T ss_dssp ------------TTTTTCTTCCEEECTTSCCSCCCT----TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEE
T ss_pred ------------hhcccccCCCEEECCCCcCCccCH----HHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeE
Confidence 1111 678999999999975321 233456789999999999873 22334455689999
Q ss_pred EccCCCCCh-hHHHHHHHHHhcC
Q 010572 435 NAGYNLMPL-ESLTIICSALKVA 456 (507)
Q Consensus 435 ~Ls~N~l~~-~g~~~L~~aL~~~ 456 (507)
+|++|++.- -+...+..-++++
T Consensus 201 ~L~~Np~~C~c~~~~l~~wl~~~ 223 (290)
T 1p9a_G 201 FLHGNPWLCNCEILYFRRWLQDN 223 (290)
T ss_dssp ECCSCCBCCSGGGHHHHHHHHHT
T ss_pred EeCCCCccCcCccHHHHHHHHhC
Confidence 999999963 3344455556554
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.95 E-value=1.7e-09 Score=107.66 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=64.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
.+|++|+|++|.++.. ..+....+|++|+|++|.++.. ..+...++|++|++++|.|++...
T Consensus 112 ~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~------ 173 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP------ 173 (291)
T ss_dssp TTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG------
T ss_pred CCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchh------
Confidence 6799999999999874 2456678899999999999874 345566889999999999987542
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|+|++|.+
T Consensus 174 l~~-l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 174 LAG-LTKLQNLYLSKNHI 190 (291)
T ss_dssp GTT-CTTCCEEECCSSCC
T ss_pred hcC-CCccCEEECCCCcC
Confidence 333 36899999999997
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.94 E-value=6.7e-10 Score=122.20 Aligned_cols=172 Identities=19% Similarity=0.094 Sum_probs=102.9
Q ss_pred cCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCC
Q 010572 196 ESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPS 275 (507)
Q Consensus 196 ~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~ 275 (507)
..+|+.|+++++.... +. . +..+++|++|+|++|.+++... +.. ...++.|+++.+.+.+.
T Consensus 42 L~~L~~L~l~~n~i~~-l~----~-l~~l~~L~~L~Ls~N~l~~~~~------l~~----l~~L~~L~Ls~N~l~~l--- 102 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ----G-IQYLPNVTKLFLNGNKLTDIKP------LTN----LKNLGWLFLDENKIKDL--- 102 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT----T-GGGCTTCCEEECTTSCCCCCGG------GGG----CTTCCEEECCSSCCCCC---
T ss_pred CCCCCEEECcCCCCCC-Ch----H-HccCCCCCEEEeeCCCCCCChh------hcc----CCCCCEEECcCCCCCCC---
Confidence 4556777776653211 11 1 2456788888888887765332 111 13466666666654321
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcc
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSL 355 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L 355 (507)
..+..+++|++|+|++|.|.+.. .+ ...++|+.|+|++|.|++. . .+..+
T Consensus 103 -------~~l~~l~~L~~L~Ls~N~l~~l~------~l-~~l~~L~~L~Ls~N~l~~l-~---------~l~~l------ 152 (605)
T 1m9s_A 103 -------SSLKDLKKLKSLSLEHNGISDIN------GL-VHLPQLESLYLGNNKITDI-T---------VLSRL------ 152 (605)
T ss_dssp -------TTSTTCTTCCEEECTTSCCCCCG------GG-GGCTTCSEEECCSSCCCCC-G---------GGGSC------
T ss_pred -------hhhccCCCCCEEEecCCCCCCCc------cc-cCCCccCEEECCCCccCCc-h---------hhccc------
Confidence 13566777888888888877632 22 3457788888888877652 1 11111
Q ss_pred ccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 356 RLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 356 ~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
++|++|+|++|.|..... +....+|++|+|++|.|++. ..+...++|+.|+
T Consensus 153 -----------------~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 153 -----------------TKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLE 203 (605)
T ss_dssp -----------------TTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEE
T ss_pred -----------------CCCCEEECcCCcCCCchh------hccCCCCCEEECcCCCCCCC------hHHccCCCCCEEE
Confidence 457777777777765432 44556777778877777653 2344556777788
Q ss_pred ccCCCCChhH
Q 010572 436 AGYNLMPLES 445 (507)
Q Consensus 436 Ls~N~l~~~g 445 (507)
|++|.+...+
T Consensus 204 L~~N~l~~~p 213 (605)
T 1m9s_A 204 LFSQECLNKP 213 (605)
T ss_dssp CCSEEEECCC
T ss_pred ccCCcCcCCc
Confidence 8777776543
No 104
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.91 E-value=5.3e-09 Score=115.39 Aligned_cols=213 Identities=18% Similarity=0.041 Sum_probs=132.3
Q ss_pred ceeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCC
Q 010572 174 HYARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKR 253 (507)
Q Consensus 174 ~~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~ 253 (507)
.+++.|+|.+..-. .+.. ...+|++|++++|.... +-..+++|++|+|++|.++.-..
T Consensus 61 ~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~l~~--------lp~~l~~L~~L~Ls~N~l~~l~~----------- 118 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQLTS--------LPVLPPGLLELSIFSNPLTHLPA----------- 118 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCCCSC--------CCCCCTTCCEEEECSCCCCCCCC-----------
T ss_pred CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCcCCc--------CCCCCCCCCEEECcCCcCCCCCC-----------
Confidence 35677777642111 1111 23567888887774321 11144678888888887764100
Q ss_pred cccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 254 KRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 254 ~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
....++.|.++.|.+.. ++. ..++|++|+|++|++..-. ....+|+.|+|++|.|++.
T Consensus 119 -~l~~L~~L~L~~N~l~~-----lp~-------~l~~L~~L~Ls~N~l~~l~---------~~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQLTS-----LPV-------LPPGLQELSVSDNQLASLP---------ALPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp -CCTTCCEEECCSSCCSC-----CCC-------CCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSCC
T ss_pred -CCCCcCEEECCCCCCCc-----CCC-------CCCCCCEEECcCCcCCCcC---------CccCCCCEEECCCCCCCCC
Confidence 12346777777665432 111 1377888888888886532 1236788888888888751
Q ss_pred ccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCC
Q 010572 334 LSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRG 413 (507)
Q Consensus 334 l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i 413 (507)
- ....+|+.|.+.+|. +. .++. ..++|+.|++++|.|+... ....+|++|+|++|.|
T Consensus 177 ~------------~~~~~L~~L~Ls~N~-l~-~l~~-~~~~L~~L~L~~N~l~~l~--------~~~~~L~~L~Ls~N~L 233 (622)
T 3g06_A 177 P------------MLPSGLQELSVSDNQ-LA-SLPT-LPSELYKLWAYNNRLTSLP--------ALPSGLKELIVSGNRL 233 (622)
T ss_dssp C------------CCCTTCCEEECCSSC-CS-CCCC-CCTTCCEEECCSSCCSSCC--------CCCTTCCEEECCSSCC
T ss_pred c------------ccCCCCcEEECCCCC-CC-CCCC-ccchhhEEECcCCcccccC--------CCCCCCCEEEccCCcc
Confidence 1 123456666666654 10 1111 1278999999999998532 1136799999999998
Q ss_pred ChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 414 GVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 414 ~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+.-. ...++|+.|+|++|.|+.-. ....+|+.|+|++|.+
T Consensus 234 ~~lp--------~~l~~L~~L~Ls~N~L~~lp---------~~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 234 TSLP--------VLPSELKELMVSGNRLTSLP---------MLPSGLLSLSVYRNQL 273 (622)
T ss_dssp SCCC--------CCCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCC
T ss_pred CcCC--------CCCCcCcEEECCCCCCCcCC---------cccccCcEEeCCCCCC
Confidence 7521 23467999999999998421 1236899999999998
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.90 E-value=1e-09 Score=105.32 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
++|++|+|++|.+....... +...++|++|+|++|.|+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~-----~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGV-----FDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEEcCCCccCccCHHH-----hhCccCCcEEECCCCCCCC
Confidence 56777777777776643321 1334677777777777753
No 106
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.89 E-value=5.2e-09 Score=110.93 Aligned_cols=135 Identities=18% Similarity=0.078 Sum_probs=73.0
Q ss_pred CCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHh
Q 010572 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGK 369 (507)
Q Consensus 290 sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~ 369 (507)
+|++|+|++|++..-. .+ ...++|++|++++|.|++. +. . ..+|+.|.+.++. .. .++.
T Consensus 174 ~L~~L~L~~n~l~~l~------~~-~~l~~L~~L~l~~N~l~~l-~~--------~---~~~L~~L~l~~n~-l~-~lp~ 232 (454)
T 1jl5_A 174 SLEFIAAGNNQLEELP------EL-QNLPFLTAIYADNNSLKKL-PD--------L---PLSLESIVAGNNI-LE-ELPE 232 (454)
T ss_dssp TCCEEECCSSCCSSCC------CC-TTCTTCCEEECCSSCCSSC-CC--------C---CTTCCEEECCSSC-CS-SCCC
T ss_pred cccEEECcCCcCCcCc------cc-cCCCCCCEEECCCCcCCcC-CC--------C---cCcccEEECcCCc-CC-cccc
Confidence 5666666666665421 11 3346666666666666641 10 0 1235555555543 11 2222
Q ss_pred hhc-CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHH
Q 010572 370 FFG-TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTI 448 (507)
Q Consensus 370 ~l~-~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~ 448 (507)
.-. +.|++|++++|.++... . ...+|++|++++|.++.- .. ..++|+.|++++|.++.-.
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~-----~---~~~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~ls~N~l~~l~--- 293 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLP-----D---LPPSLEALNVRDNYLTDL-----PE---LPQSLTFLDVSENIFSGLS--- 293 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCC-----S---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSEES---
T ss_pred cCCCCCCCEEECCCCcCCccc-----c---cccccCEEECCCCccccc-----Cc---ccCcCCEEECcCCccCccc---
Confidence 112 67888888888776421 0 125688888888877641 11 1246888888888887511
Q ss_pred HHHHHhcCCCCccEEEecCCCC
Q 010572 449 ICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 449 L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.-..+|+.|++++|.+
T Consensus 294 ------~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 294 ------ELPPNLYYLNASSNEI 309 (454)
T ss_dssp ------CCCTTCCEEECCSSCC
T ss_pred ------CcCCcCCEEECcCCcC
Confidence 0013566666666654
No 107
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.88 E-value=1.9e-10 Score=110.65 Aligned_cols=80 Identities=14% Similarity=0.019 Sum_probs=47.4
Q ss_pred CCCc-EEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCC-CCccEEEccCCCCChhHHHHH
Q 010572 373 TSVQ-VLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLA-PELVEVNAGYNLMPLESLTII 449 (507)
Q Consensus 373 ~~L~-~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n-~~L~~L~Ls~N~l~~~g~~~L 449 (507)
..|+ +|+|++|+++..... +.. ..+|++|+|++|+ ++.-... ++... ++|+.|++++|.|+.-...
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~----~~~-~~~L~~L~L~~n~~l~~i~~~----~~~~l~~~L~~L~l~~N~l~~l~~~-- 223 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGY----AFN-GTKLDAVYLNKNKYLTVIDKD----AFGGVYSGPSLLDVSQTSVTALPSK-- 223 (239)
T ss_dssp BSSEEEEECCSCCCCEECTT----TTT-TCEEEEEECTTCTTCCEECTT----TTTTCSBCCSEEECTTCCCCCCCCT--
T ss_pred hcceeEEEcCCCCCcccCHh----hcC-CCCCCEEEcCCCCCcccCCHH----HhhccccCCcEEECCCCccccCChh--
Confidence 5677 788888877654321 112 2568888888884 7643222 23334 6788888888887642211
Q ss_pred HHHHhcCCCCccEEEecCCC
Q 010572 450 CSALKVAKGHLQRLDLTGNN 469 (507)
Q Consensus 450 ~~aL~~~~~~L~~LdL~~N~ 469 (507)
.-.+|+.|++.++.
T Consensus 224 ------~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 224 ------GLEHLKELIARNTW 237 (239)
T ss_dssp ------TCTTCSEEECTTC-
T ss_pred ------HhccCceeeccCcc
Confidence 12467888876653
No 108
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.86 E-value=8.3e-09 Score=109.40 Aligned_cols=98 Identities=16% Similarity=0.095 Sum_probs=55.2
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCc
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSS 276 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~ 276 (507)
..|++|+++++.... + +. +.++++|++|++++|.+++ ++. . ...++.|+++.+.+.+
T Consensus 131 ~~L~~L~L~~n~l~~-l----p~-~~~l~~L~~L~l~~N~l~~--lp~---------~-~~~L~~L~L~~n~l~~----- 187 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-L----PE-LQNSSFLKIIDVDNNSLKK--LPD---------L-PPSLEFIAAGNNQLEE----- 187 (454)
T ss_dssp TTCCEEECCSSCCSS-C----CC-CTTCTTCCEEECCSSCCSC--CCC---------C-CTTCCEEECCSSCCSS-----
T ss_pred CCCCEEECcCCCCCC-C----cc-cCCCCCCCEEECCCCcCcc--cCC---------C-cccccEEECcCCcCCc-----
Confidence 467788877764321 1 12 3466778888888887763 100 0 1246666666655432
Q ss_pred chHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 277 VVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 277 l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
++ .+..+++|++|++++|.+.+-. ....+|++|+|++|.++
T Consensus 188 l~-----~~~~l~~L~~L~l~~N~l~~l~---------~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 188 LP-----ELQNLPFLTAIYADNNSLKKLP---------DLPLSLESIVAGNNILE 228 (454)
T ss_dssp CC-----CCTTCTTCCEEECCSSCCSSCC---------CCCTTCCEEECCSSCCS
T ss_pred Cc-----cccCCCCCCEEECCCCcCCcCC---------CCcCcccEEECcCCcCC
Confidence 11 1455667777777777765411 11246666666666665
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.86 E-value=5.3e-09 Score=102.61 Aligned_cols=149 Identities=14% Similarity=0.049 Sum_probs=110.4
Q ss_pred CCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCc
Q 010572 224 SETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDR 303 (507)
Q Consensus 224 ~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~ 303 (507)
+.+|++|++++|.++.-. .+.. ...++.|+++.+.+.+ ++. +..+++|++|+|++|++.+
T Consensus 40 l~~L~~L~l~~n~i~~l~------~l~~----l~~L~~L~L~~N~i~~-----~~~-----l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA------GMQF----FTNLKELHLSHNQISD-----LSP-----LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HTTCSEEECTTSCCCCCT------TGGG----CTTCCEEECCSSCCCC-----CGG-----GTTCSSCCEEECCSSCCSC
T ss_pred cCcCcEEECcCCCcccch------HHhh----CCCCCEEECCCCccCC-----Chh-----hccCCCCCEEECCCCccCC
Confidence 378999999999987521 2221 2458888888776543 221 6789999999999999987
Q ss_pred hHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccC
Q 010572 304 DFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAI 383 (507)
Q Consensus 304 ~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n 383 (507)
-.. + .. .+|++|+|++|.|++. . .+... ++|++|+|++|
T Consensus 100 l~~------~-~~-~~L~~L~L~~N~l~~~-~---------~l~~l-----------------------~~L~~L~Ls~N 138 (263)
T 1xeu_A 100 LNG------I-PS-ACLSRLFLDNNELRDT-D---------SLIHL-----------------------KNLEILSIRNN 138 (263)
T ss_dssp CTT------C-CC-SSCCEEECCSSCCSBS-G---------GGTTC-----------------------TTCCEEECTTS
T ss_pred cCc------c-cc-CcccEEEccCCccCCC-h---------hhcCc-----------------------ccccEEECCCC
Confidence 432 2 22 8999999999999852 0 11111 56889999999
Q ss_pred CCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhH
Q 010572 384 GLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLES 445 (507)
Q Consensus 384 ~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g 445 (507)
+|++.. .+....+|++|+|++|.+++. ..+...++|+.|++++|.+...+
T Consensus 139 ~i~~~~------~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 139 KLKSIV------MLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCCBCG------GGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCCCCh------HHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccCCc
Confidence 998752 456678899999999999876 45667788999999999987554
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.85 E-value=1e-09 Score=112.46 Aligned_cols=152 Identities=19% Similarity=0.115 Sum_probs=86.3
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
.+++|++|+|++|+|....... + ...++|++|+|++|.|+..... .+...
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~----~-~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l----------------- 111 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEA----F-VPVPNLRYLDLSSNHLHTLDEF--------LFSDL----------------- 111 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTT----T-TTCTTCCEEECCSSCCCEECTT--------TTTTC-----------------
T ss_pred cccccCEEECCCCcCCccChhh----c-cCCCCCCEEECCCCcCCcCCHH--------HhCCC-----------------
Confidence 4566666666666665543221 1 2345666666666666531110 11111
Q ss_pred HHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHH
Q 010572 367 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL 446 (507)
Q Consensus 367 L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~ 446 (507)
.+|++|+|++|.|+... ..++....+|++|+|++|.|+.-....+. .+...++|+.|+|++|.|..-..
T Consensus 112 ------~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 112 ------QALEVLLLYNNHIVVVD----RNAFEDMAQLQKLYLSQNQISRFPVELIK-DGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp ------TTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCSCCGGGTC-----CTTCCEEECCSSCCCCCCH
T ss_pred ------cCCCEEECCCCcccEEC----HHHhCCcccCCEEECCCCcCCeeCHHHhc-CcccCCcCCEEECCCCCCCccCH
Confidence 67888999999987543 22345567899999999998763322221 01335789999999999986443
Q ss_pred HHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHH
Q 010572 447 TIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSE 482 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~ 482 (507)
..+.. +. .-.|+.|+|.+|.|.-.-.....+..
T Consensus 181 ~~~~~-l~--~~~l~~l~l~~N~~~C~C~l~~~~~~ 213 (361)
T 2xot_A 181 TDLQK-LP--AWVKNGLYLHNNPLECDCKLYQLFSH 213 (361)
T ss_dssp HHHHH-SC--HHHHTTEECCSSCEECCHHHHHHHHH
T ss_pred HHhhh-cc--HhhcceEEecCCCccCCcCcHHHHHH
Confidence 33321 11 01257899999987333333333333
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.84 E-value=9e-10 Score=103.51 Aligned_cols=133 Identities=19% Similarity=0.138 Sum_probs=70.9
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
++|++|+|++|++....... ....++|++|+|++|.|++.... .+...
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l------------------- 75 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGV-----FDELTSLTQLYLGGNKLQSLPNG--------VFNKL------------------- 75 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCTT--------TTTTC-------------------
T ss_pred CCCcEEEcCCCccCcCChhh-----hcccccCcEEECCCCccCccChh--------hcCCC-------------------
Confidence 46777888888776544321 23457778888887777642111 11111
Q ss_pred hhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHH
Q 010572 369 KFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTI 448 (507)
Q Consensus 369 ~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~ 448 (507)
.+|++|+|++|.|+.... ..+....+|++|+|++|.++.... .++...++|++|++++|.|+....
T Consensus 76 ----~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~-- 141 (208)
T 2o6s_A 76 ----TSLTYLNLSTNQLQSLPN----GVFDKLTQLKELALNTNQLQSLPD----GVFDKLTQLKDLRLYQNQLKSVPD-- 141 (208)
T ss_dssp ----TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT--
T ss_pred ----CCcCEEECCCCcCCccCH----hHhcCccCCCEEEcCCCcCcccCH----hHhccCCcCCEEECCCCccceeCH--
Confidence 445666666666653221 123334556666666666654221 123334566667776666653221
Q ss_pred HHHHHhcCCCCccEEEecCCCC
Q 010572 449 ICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 449 L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++.. ..+|+.|+|++|.+
T Consensus 142 --~~~~~-l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 142 --GVFDR-LTSLQYIWLHDNPW 160 (208)
T ss_dssp --TTTTT-CTTCCEEECCSCCB
T ss_pred --HHhcc-CCCccEEEecCCCe
Confidence 11222 24566777776665
No 112
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.83 E-value=6.8e-10 Score=120.28 Aligned_cols=178 Identities=17% Similarity=0.119 Sum_probs=111.1
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~ 365 (507)
..+++|+.++++.|+........ ......+++.++++.|.+++.... .+....+++.|.+.++.....
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~----~~~~l~~l~~l~ls~n~l~~~~~~--------~~~~~~~L~~L~Ls~N~~~~~ 484 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTHTRVAFNG--------IFNGLSSLEVLKMAGNSFQEN 484 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSC----TTTTCTTCCEEECTTSCCEECCTT--------TTTTCTTCCEEECTTCEEGGG
T ss_pred cccccccchhhhhcccccccccc----cccccccccccccccccccccccc--------ccccchhhhhhhhhhcccccc
Confidence 44566777777766654432211 123346777888888877643221 344445566666665542222
Q ss_pred HHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 366 SLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 366 ~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
.++..+. .+|++|+|++|+|+... ..++....+|++|+|++|+|+.-... .+...++|++|+|++|.|..
T Consensus 485 ~~~~~~~~l~~L~~L~Ls~N~L~~l~----~~~f~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 485 FLPDIFTELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMSHNNFFSLDTF----PYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCCBCCCG----GGTTCTTCCEEECTTSCCCB
T ss_pred cCchhhhhccccCEEECCCCccCCcC----hHHHcCCCCCCEEECCCCcCCCCChh----HHhCCCCCCEEECCCCcCCC
Confidence 2233343 78999999999998643 23345567899999999998764333 34455789999999999975
Q ss_pred hHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcC
Q 010572 444 ESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNG 487 (507)
Q Consensus 444 ~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~ 487 (507)
.... ++.....+|+.|+|++|+|.=.-+.+....-+..+.
T Consensus 557 ~~~~----~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~ 596 (635)
T 4g8a_A 557 SKKQ----ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 596 (635)
T ss_dssp CCSS----CTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTT
T ss_pred CCHH----HHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCC
Confidence 4322 233222579999999999843444444444444443
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.82 E-value=1.5e-09 Score=118.65 Aligned_cols=192 Identities=14% Similarity=0.060 Sum_probs=97.5
Q ss_pred eeEEEEeccCcchhhhhhhhccCCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCc
Q 010572 175 YARCLRLQNALCVEETCQLLRESKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRK 254 (507)
Q Consensus 175 ~v~~L~L~~~l~~~~~~~ll~~~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~ 254 (507)
.++.|+|.+..-.+ +..-. ..+|++|++++|... .+ + ..+++|++|+|++|.+++ .+. + .
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~-~i----p---~~l~~L~~L~Ls~N~l~~-ip~-l----~---- 119 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALI-SL----P---ELPASLEYLDACDNRLST-LPE-L----P---- 119 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCS-CC----C---CCCTTCCEEECCSSCCSC-CCC-C----C----
T ss_pred CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCc-cc----c---cccCCCCEEEccCCCCCC-cch-h----h----
Confidence 46667775421111 21101 145777777766432 11 1 234677777777777654 111 1 0
Q ss_pred ccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcc
Q 010572 255 RIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWL 334 (507)
Q Consensus 255 ~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l 334 (507)
..++.|+++.|.+.. ++. .+++|++|+|++|.|+.-.. ..++|++|+|++|.|++ +
T Consensus 120 --~~L~~L~Ls~N~l~~-----lp~-------~l~~L~~L~Ls~N~l~~lp~---------~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 120 --ASLKHLDVDNNQLTM-----LPE-------LPALLEYINADNNQLTMLPE---------LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp --TTCCEEECCSSCCSC-----CCC-------CCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSC-C
T ss_pred --cCCCEEECCCCcCCC-----CCC-------cCccccEEeCCCCccCcCCC---------cCCCcCEEECCCCCCCC-c
Confidence 135566665555422 111 34566777777776654221 23566777777776664 1
Q ss_pred cccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhh-cCCCCCCEEeccCCCC
Q 010572 335 SKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGV-TKELKLVNINISKNRG 413 (507)
Q Consensus 335 ~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL-~~n~~L~~LdLs~N~i 413 (507)
+ . +.++|+.|+|++|+|+.... +...| .....|++|+|++|.|
T Consensus 176 p---------------------------------~-l~~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 176 P---------------------------------E-LPESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp C---------------------------------C-CCTTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCC
T ss_pred c---------------------------------h-hhCCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcc
Confidence 1 1 12456777777777764332 21111 1112237777777777
Q ss_pred ChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 414 GVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 414 ~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
+. +...+...++|+.|+|++|.|.......+..
T Consensus 220 ~~-----lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 220 TH-----IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-----CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred ee-----cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 63 1122223466777777777777666555554
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.81 E-value=5.4e-09 Score=100.26 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=114.2
Q ss_pred CCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH-
Q 010572 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG- 368 (507)
Q Consensus 290 sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~- 368 (507)
+.+.++.+++.++.-.. ...++|++|+|++|.|++..+. .+....+|+.|.+.+|. + ..+.
T Consensus 20 s~~~v~c~~~~l~~ip~--------~~~~~L~~L~Ls~n~i~~~~~~--------~~~~l~~L~~L~L~~N~-l-~~i~~ 81 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA--------GIPTNAQILYLHDNQITKLEPG--------VFDSLINLKELYLGSNQ-L-GALPV 81 (229)
T ss_dssp ETTEEECTTSCCSSCCS--------CCCTTCSEEECCSSCCCCCCTT--------TTTTCTTCCEEECCSSC-C-CCCCT
T ss_pred eCCEeEccCCCcCccCC--------CCCCCCCEEEcCCCccCccCHH--------HhhCccCCcEEECCCCC-C-CCcCh
Confidence 46778889888876432 1138899999999999974432 56666777887777765 1 1111
Q ss_pred hhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHH
Q 010572 369 KFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL 446 (507)
Q Consensus 369 ~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~ 446 (507)
..+. .+|++|+|++|.|+.... ..+....+|++|+|++|.|+.- ...+...++|+.|+|++|.|..-..
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPS----AVFDRLVHLKELFMCCNKLTEL-----PRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCSC-----CTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred hhcccCCCcCEEECCCCcCCccCh----hHhCcchhhCeEeccCCccccc-----CcccccCCCCCEEECCCCcCCccCH
Confidence 2223 789999999999985432 2344567899999999999732 2233456789999999999984321
Q ss_pred HHHHHHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCe
Q 010572 447 TIICSALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i 490 (507)
.++.. ..+|+.|+|++|.+.-.......+..+.....+.
T Consensus 153 ----~~~~~-l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~ 191 (229)
T 3e6j_A 153 ----GAFDR-LSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSI 191 (229)
T ss_dssp ----TTTTT-CTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred ----HHHhC-CCCCCEEEeeCCCccCCcchhHHHHHHHHhCccc
Confidence 22333 3689999999999843333344555555544333
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.78 E-value=3.9e-09 Score=114.27 Aligned_cols=185 Identities=16% Similarity=0.098 Sum_probs=86.9
Q ss_pred CcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcc
Q 010572 198 KLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSV 277 (507)
Q Consensus 198 ~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l 277 (507)
.+++|+|++|... .+-+.-+.++++|++|+|++|.++.-..
T Consensus 53 ~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~----------------------------------- 93 (635)
T 4g8a_A 53 STKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIED----------------------------------- 93 (635)
T ss_dssp TCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECT-----------------------------------
T ss_pred CCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcCh-----------------------------------
Confidence 5788888877432 1111123466788888888886642110
Q ss_pred hHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcccc
Q 010572 278 VVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (507)
Q Consensus 278 ~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~l 357 (507)
.++..+++|++|+|++|+|..-.... +...++|++|+|++|.|++.... +++..++|+.|.+
T Consensus 94 -----~~f~~L~~L~~L~Ls~N~l~~l~~~~-----f~~L~~L~~L~Ls~N~l~~l~~~--------~~~~L~~L~~L~L 155 (635)
T 4g8a_A 94 -----GAYQSLSHLSTLILTGNPIQSLALGA-----FSGLSSLQKLVAVETNLASLENF--------PIGHLKTLKELNV 155 (635)
T ss_dssp -----TTTTTCTTCCEEECTTCCCCEECGGG-----GTTCTTCCEEECTTSCCCCSTTC--------CCTTCTTCCEEEC
T ss_pred -----hHhcCCCCCCEEEccCCcCCCCCHHH-----hcCCCCCCEEECCCCcCCCCChh--------hhhcCcccCeecc
Confidence 12234455555555555554432211 12335555555555555432111 2333333444443
Q ss_pred ccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEE
Q 010572 358 LNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVN 435 (507)
Q Consensus 358 l~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~ 435 (507)
.+|.--...++.++. ..|++|+|++|.|.......+...-.....+..++++.|.++..... ......+..++
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-----~~~~~~~~~l~ 230 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-----AFKEIRLHKLT 230 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-----TTTTCEEEEEE
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc-----cccchhhhhhh
Confidence 333200000112222 56777777777776543333332111122355677777776542211 11122356677
Q ss_pred ccCCCCChh
Q 010572 436 AGYNLMPLE 444 (507)
Q Consensus 436 Ls~N~l~~~ 444 (507)
++.|.....
T Consensus 231 l~~n~~~~~ 239 (635)
T 4g8a_A 231 LRNNFDSLN 239 (635)
T ss_dssp EESCCSSHH
T ss_pred hhccccccc
Confidence 776666543
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.77 E-value=3.3e-09 Score=101.27 Aligned_cols=133 Identities=12% Similarity=0.052 Sum_probs=92.4
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
++|++|+|++|+|....... +...++|++|+|++|.|++..+. ++...
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~-----~~~l~~L~~L~Ls~N~i~~~~~~--------~~~~l------------------- 79 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGA-----FSPYKKLRRIDLSNNQISELAPD--------AFQGL------------------- 79 (220)
T ss_dssp TTCCEEECCSSCCCEECTTS-----STTCTTCCEEECCSSCCCEECTT--------TTTTC-------------------
T ss_pred cCCCEEECCCCcCCCcCHhH-----hhCCCCCCEEECCCCcCCCcCHH--------HhhCC-------------------
Confidence 68999999999998755421 24468999999999999853221 11111
Q ss_pred hhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHH
Q 010572 369 KFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTI 448 (507)
Q Consensus 369 ~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~ 448 (507)
.+|++|+|++|.|+.... ..+....+|++|+|++|.|+..... .+...++|+.|+|++|.|......
T Consensus 80 ----~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~- 146 (220)
T 2v9t_B 80 ----RSLNSLVLYGNKITELPK----SLFEGLFSLQLLLLNANKINCLRVD----AFQDLHNLNLLSLYDNKLQTIAKG- 146 (220)
T ss_dssp ----SSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTT-
T ss_pred ----cCCCEEECCCCcCCccCH----hHccCCCCCCEEECCCCCCCEeCHH----HcCCCCCCCEEECCCCcCCEECHH-
Confidence 567888999998875321 1234456799999999998765432 344557899999999998754321
Q ss_pred HHHHHhcCCCCccEEEecCCCC
Q 010572 449 ICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 449 L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
++.. ..+|+.|+|++|.|
T Consensus 147 ---~~~~-l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 147 ---TFSP-LRAIQTMHLAQNPF 164 (220)
T ss_dssp ---TTTT-CTTCCEEECCSSCE
T ss_pred ---HHhC-CCCCCEEEeCCCCc
Confidence 2332 35799999999988
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.75 E-value=3e-09 Score=101.51 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=100.4
Q ss_pred ccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc
Q 010572 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (507)
Q Consensus 257 ~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~ 336 (507)
..++.|.++.+.+... + ...+..+++|++|+|++|++....... + ...++|++|+|++|.|+.....
T Consensus 32 ~~l~~L~l~~n~i~~i-----~---~~~~~~l~~L~~L~Ls~N~i~~~~~~~----~-~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVI-----P---PGAFSPYKKLRRIDLSNNQISELAPDA----F-QGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp TTCCEEECCSSCCCEE-----C---TTSSTTCTTCCEEECCSSCCCEECTTT----T-TTCSSCCEEECCSSCCCCCCTT
T ss_pred cCCCEEECCCCcCCCc-----C---HhHhhCCCCCCEEECCCCcCCCcCHHH----h-hCCcCCCEEECCCCcCCccCHh
Confidence 3578888887765432 1 124677899999999999998764432 2 4569999999999999852211
Q ss_pred cccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChH
Q 010572 337 YDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE 416 (507)
Q Consensus 337 ~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~ 416 (507)
.+... .+|++|+|++|.|+.... .++....+|++|+|++|.++..
T Consensus 99 --------~f~~l-----------------------~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 99 --------LFEGL-----------------------FSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp --------TTTTC-----------------------TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCC
T ss_pred --------HccCC-----------------------CCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCCCcCCEE
Confidence 11111 568899999999976432 2355567899999999998765
Q ss_pred HHHHHHhhCCCCCCccEEEccCCCCCh-hHHHHHHHHHh
Q 010572 417 TAKFLSKLMPLAPELVEVNAGYNLMPL-ESLTIICSALK 454 (507)
Q Consensus 417 g~~~L~~~L~~n~~L~~L~Ls~N~l~~-~g~~~L~~aL~ 454 (507)
... .+...++|+.|+|++|++.- -...-+.+-++
T Consensus 144 ~~~----~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~ 178 (220)
T 2v9t_B 144 AKG----TFSPLRAIQTMHLAQNPFICDCHLKWLADYLH 178 (220)
T ss_dssp CTT----TTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred CHH----HHhCCCCCCEEEeCCCCcCCCCccHHHHHHHH
Confidence 432 34455789999999999953 23344444444
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.74 E-value=6.3e-09 Score=99.26 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=89.4
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
+.+++|+|++|+|....... .....++|++|+|++|.|++.... ++...
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~----~~~~l~~L~~L~L~~N~i~~i~~~--------~~~~l------------------- 80 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATG----IFKKLPQLRKINFSNNKITDIEEG--------AFEGA------------------- 80 (220)
T ss_dssp TTCSEEECCSSCCCEECCCC----CGGGCTTCCEEECCSSCCCEECTT--------TTTTC-------------------
T ss_pred CCCCEEEcCCCcCCccCchh----hhccCCCCCEEECCCCcCCEECHH--------HhCCC-------------------
Confidence 45788999999887653211 123458888999998888752211 11111
Q ss_pred hhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHH
Q 010572 369 KFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTI 448 (507)
Q Consensus 369 ~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~ 448 (507)
.+|++|+|++|.|+.... .++....+|++|+|++|.|+..... .+...++|+.|+|++|.|..-..
T Consensus 81 ----~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~-- 146 (220)
T 2v70_A 81 ----SGVNEILLTSNRLENVQH----KMFKGLESLKTLMLRSNRITCVGND----SFIGLSSVRLLSLYDNQITTVAP-- 146 (220)
T ss_dssp ----TTCCEEECCSSCCCCCCG----GGGTTCSSCCEEECTTSCCCCBCTT----SSTTCTTCSEEECTTSCCCCBCT--
T ss_pred ----CCCCEEECCCCccCccCH----hHhcCCcCCCEEECCCCcCCeECHh----HcCCCccCCEEECCCCcCCEECH--
Confidence 567888999998875432 2345567899999999988764332 34455789999999999875322
Q ss_pred HHHHHhcCCCCccEEEecCCCC
Q 010572 449 ICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 449 L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++.. ..+|+.|+|++|.|
T Consensus 147 --~~~~~-l~~L~~L~L~~N~l 165 (220)
T 2v70_A 147 --GAFDT-LHSLSTLNLLANPF 165 (220)
T ss_dssp --TTTTT-CTTCCEEECCSCCE
T ss_pred --HHhcC-CCCCCEEEecCcCC
Confidence 12332 35799999999988
No 119
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.72 E-value=3.9e-09 Score=101.28 Aligned_cols=82 Identities=12% Similarity=-0.021 Sum_probs=56.3
Q ss_pred cEEEeccC-CCCchhHHHHHHhhcCCCCCC-EEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCC-CChhHHHHHHHH
Q 010572 376 QVLNIGAI-GLGSSGFRVLQDGVTKELKLV-NINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNL-MPLESLTIICSA 452 (507)
Q Consensus 376 ~~L~Ls~n-~l~~~G~~~L~~aL~~n~~L~-~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~-l~~~g~~~L~~a 452 (507)
++|++++| .++..... ++....+|+ +|++++|.++.-.. .++.. ++|+.|++++|. ++.-... +
T Consensus 133 ~~L~l~~N~~l~~i~~~----~~~~l~~L~~~L~l~~n~l~~i~~----~~~~~-~~L~~L~L~~n~~l~~i~~~----~ 199 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVN----AFQGLCNETLTLKLYNNGFTSVQG----YAFNG-TKLDAVYLNKNKYLTVIDKD----A 199 (239)
T ss_dssp EEEEEESCTTCCEECTT----TTTTTBSSEEEEECCSCCCCEECT----TTTTT-CEEEEEECTTCTTCCEECTT----T
T ss_pred cEEECCCCcchhhcCcc----cccchhcceeEEEcCCCCCcccCH----hhcCC-CCCCEEEcCCCCCcccCCHH----H
Confidence 39999999 88764322 244466899 99999999874332 12222 579999999995 8743211 2
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.....+|+.|+|++|.+
T Consensus 200 ~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp TTTCSBCCSEEECTTCCC
T ss_pred hhccccCCcEEECCCCcc
Confidence 222115799999999998
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.71 E-value=2.4e-08 Score=88.61 Aligned_cols=133 Identities=14% Similarity=0.037 Sum_probs=84.3
Q ss_pred CCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHH
Q 010572 288 GRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASL 367 (507)
Q Consensus 288 ~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L 367 (507)
.++|++|++++|.+.+.... ......++|++|+|++|.|++. . .+...
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~n~l~~~-~---------~~~~l------------------ 63 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE----GLTDEFEELEFLSTINVGLTSI-A---------NLPKL------------------ 63 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC----SCCTTCTTCCEEECTTSCCCCC-T---------TCCCC------------------
T ss_pred CccCeEEEccCCcCChhHHH----HHHhhcCCCcEEECcCCCCCCc-h---------hhhcC------------------
Confidence 36789999999988732221 1124458899999999988752 1 11111
Q ss_pred HhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHH
Q 010572 368 GKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLT 447 (507)
Q Consensus 368 ~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~ 447 (507)
++|++|+|++|.++.. +...+....+|++|++++|.+++... ...+...++|++|++++|.++.....
T Consensus 64 -----~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~~ 131 (149)
T 2je0_A 64 -----NKLKKLELSDNRVSGG----LEVLAEKCPNLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNCEVTNLNDY 131 (149)
T ss_dssp -----TTCCEEECCSSCCCSC----THHHHHHCTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTCGGGGSTTH
T ss_pred -----CCCCEEECCCCcccch----HHHHhhhCCCCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCCcccchHHH
Confidence 5678888888888763 22333345678999999998876321 12344557889999999988754321
Q ss_pred HHHHHHhcCCCCccEEEec
Q 010572 448 IICSALKVAKGHLQRLDLT 466 (507)
Q Consensus 448 ~L~~aL~~~~~~L~~LdL~ 466 (507)
....+... .+|+.||++
T Consensus 132 -~~~~~~~l-~~L~~L~l~ 148 (149)
T 2je0_A 132 -RENVFKLL-PQLTYLDGY 148 (149)
T ss_dssp -HHHHHHHC-TTCCEETTB
T ss_pred -HHHHHHHC-CCcccccCC
Confidence 01223322 468888875
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.71 E-value=5.3e-09 Score=99.82 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=110.6
Q ss_pred ccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHH
Q 010572 227 LASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFG 306 (507)
Q Consensus 227 L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~ 306 (507)
-++++++++.++. .+. .. ...++.|.++.+.+..... ..++..+++|++|+|++|+|.....
T Consensus 13 ~~~l~~s~n~l~~-iP~---------~~-~~~~~~L~L~~N~l~~~~~-------~~~~~~l~~L~~L~L~~N~i~~i~~ 74 (220)
T 2v70_A 13 GTTVDCSNQKLNK-IPE---------HI-PQYTAELRLNNNEFTVLEA-------TGIFKKLPQLRKINFSNNKITDIEE 74 (220)
T ss_dssp TTEEECCSSCCSS-CCS---------CC-CTTCSEEECCSSCCCEECC-------CCCGGGCTTCCEEECCSSCCCEECT
T ss_pred CCEeEeCCCCccc-Ccc---------CC-CCCCCEEEcCCCcCCccCc-------hhhhccCCCCCEEECCCCcCCEECH
Confidence 4678888887763 110 01 2346788888777543211 1235778999999999999987654
Q ss_pred HHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCC
Q 010572 307 RMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLG 386 (507)
Q Consensus 307 ~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~ 386 (507)
.. +...++|++|+|++|.|++..+. ++... .+|++|+|++|.|+
T Consensus 75 ~~-----~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l-----------------------~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 75 GA-----FEGASGVNEILLTSNRLENVQHK--------MFKGL-----------------------ESLKTLMLRSNRIT 118 (220)
T ss_dssp TT-----TTTCTTCCEEECCSSCCCCCCGG--------GGTTC-----------------------SSCCEEECTTSCCC
T ss_pred HH-----hCCCCCCCEEECCCCccCccCHh--------HhcCC-----------------------cCCCEEECCCCcCC
Confidence 22 24568999999999999863221 11111 56889999999997
Q ss_pred chhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh-HHHHHHHHHh
Q 010572 387 SSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE-SLTIICSALK 454 (507)
Q Consensus 387 ~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~-g~~~L~~aL~ 454 (507)
.... .++....+|++|+|++|.++..... .+...++|+.|+|++|.+..+ ....+..-++
T Consensus 119 ~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 119 CVGN----DSFIGLSSVRLLSLYDNQITTVAPG----AFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp CBCT----TSSTTCTTCSEEECTTSCCCCBCTT----TTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred eECH----hHcCCCccCCEEECCCCcCCEECHH----HhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 6432 2344567899999999999875433 344567899999999999632 3333444443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.71 E-value=2.4e-08 Score=90.43 Aligned_cols=138 Identities=16% Similarity=0.024 Sum_probs=93.5
Q ss_pred CCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHH
Q 010572 287 SGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAAS 366 (507)
Q Consensus 287 ~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~ 366 (507)
..++|++|+|++|.+.+..... .....++|++|+|++|.|++. . .+...
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~----~~~~l~~L~~L~l~~n~l~~~-~---------~~~~l----------------- 70 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEG----LTAEFVNLEFLSLINVGLISV-S---------NLPKL----------------- 70 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSS----CCGGGGGCCEEEEESSCCCCC-S---------SCCCC-----------------
T ss_pred CcccCCEEECCCCCCChhhHHH----HHHhCCCCCEEeCcCCCCCCh-h---------hhccC-----------------
Confidence 3478999999999997322211 123358899999999999853 1 11111
Q ss_pred HHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHH
Q 010572 367 LGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESL 446 (507)
Q Consensus 367 L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~ 446 (507)
++|++|+|++|.++.. +...+....+|++|+|++|.+++... ...+...++|++|++++|.+.....
T Consensus 71 ------~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 71 ------PKLKKLELSENRIFGG----LDMLAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp ------SSCCEEEEESCCCCSC----CCHHHHHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred ------CCCCEEECcCCcCchH----HHHHHhhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcchHH
Confidence 5688999999999763 22223346789999999999887321 0344566889999999999976432
Q ss_pred HHHHHHHhcCCCCccEEEecCCCC
Q 010572 447 TIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 447 ~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
. ...++.. ..+|+.|++++|.+
T Consensus 138 ~-~~~~~~~-l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 138 Y-RESVFKL-LPQLTYLDGYDRED 159 (168)
T ss_dssp H-HHHHHTT-CSSCCEETTEETTS
T ss_pred H-HHHHHHh-CccCcEecCCCCCh
Confidence 1 1123433 35899999999986
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.70 E-value=1.2e-08 Score=90.45 Aligned_cols=130 Identities=17% Similarity=0.133 Sum_probs=92.6
Q ss_pred ccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc
Q 010572 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (507)
Q Consensus 257 ~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~ 336 (507)
..++.|+++.+.+.+ ..+ ...+..+++|++|+|++|.+.+. ..+ ...++|++|+|++|.|++.++.
T Consensus 17 ~~l~~L~l~~n~l~~---~~~----~~~~~~l~~L~~L~l~~n~l~~~------~~~-~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 17 SDVKELVLDNSRSNE---GKL----EGLTDEFEELEFLSTINVGLTSI------ANL-PKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp GGCSEEECTTCBCBT---TBC----CSCCTTCTTCCEEECTTSCCCCC------TTC-CCCTTCCEEECCSSCCCSCTHH
T ss_pred ccCeEEEccCCcCCh---hHH----HHHHhhcCCCcEEECcCCCCCCc------hhh-hcCCCCCEEECCCCcccchHHH
Confidence 468888888877541 112 22357789999999999999886 223 4569999999999999864321
Q ss_pred cccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChH
Q 010572 337 YDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE 416 (507)
Q Consensus 337 ~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~ 416 (507)
. +.. -++|++|+|++|.++... ....+....+|++|++++|.++..
T Consensus 83 --------~---------------------~~~--l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 83 --------L---------------------AEK--CPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp --------H---------------------HHH--CTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGS
T ss_pred --------H---------------------hhh--CCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccch
Confidence 0 000 167899999999998743 224466678899999999998765
Q ss_pred HH---HHHHhhCCCCCCccEEEccC
Q 010572 417 TA---KFLSKLMPLAPELVEVNAGY 438 (507)
Q Consensus 417 g~---~~L~~~L~~n~~L~~L~Ls~ 438 (507)
.. ..+.. .++|+.|+++.
T Consensus 129 ~~~~~~~~~~----l~~L~~L~l~d 149 (149)
T 2je0_A 129 NDYRENVFKL----LPQLTYLDGYD 149 (149)
T ss_dssp TTHHHHHHHH----CTTCCEETTBC
T ss_pred HHHHHHHHHH----CCCcccccCCC
Confidence 44 33433 47899999873
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.70 E-value=1.4e-09 Score=118.70 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHH-HHHHHhhCCCCCCccEEEccCCCCC
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVET-AKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g-~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
++|+.|+|++|.|+.. . .+....+|++|+|++|.|+... +.. +...++|+.|+|++|.|.
T Consensus 486 ~~L~~L~Ls~N~l~~l-----p-~l~~l~~L~~L~Ls~N~l~~~~~p~~----l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 486 RCLEVLQASDNALENV-----D-GVANLPRLQELLLCNNRLQQSAAIQP----LVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp TTCCEEECCSSCCCCC-----G-GGTTCSSCCEEECCSSCCCSSSTTGG----GGGCTTCCEEECTTSGGG
T ss_pred CCCCEEECCCCCCCCC-----c-ccCCCCCCcEEECCCCCCCCCCCcHH----HhcCCCCCEEEecCCcCC
Confidence 4566666777666542 1 3444556777777777665532 222 223456677777777664
No 125
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.68 E-value=2.3e-08 Score=92.82 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=83.2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCCC-CChhHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNL-MPLESLTIIC 450 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N~-l~~~g~~~L~ 450 (507)
-.|++|||++|.|+++|.+.| ....+|++|+|++|. |+|.|.+.|+..-...++|++|+|++|. |+|+|++.|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 468999999999999998776 356789999999995 9999999998631012469999999975 9999998664
Q ss_pred HHHhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCeEE
Q 010572 451 SALKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPILI 492 (507)
Q Consensus 451 ~aL~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i~~ 492 (507)
. ..+|++|+|+++.- +++.+ -....++++-|.+.|
T Consensus 137 ----~-~~~L~~L~L~~c~~-Itd~g-l~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 137 ----H-FRNLKYLFLSDLPG-VKEKE-KIVQAFKTSLPSLEL 171 (176)
T ss_dssp ----G-CTTCCEEEEESCTT-CCCHH-HHHHHHHHHCTTCEE
T ss_pred ----c-CCCCCEEECCCCCC-CCchH-HHHHHHHHHCCCcEE
Confidence 3 36899999999974 56543 234455555555544
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.68 E-value=2.9e-09 Score=96.61 Aligned_cols=138 Identities=18% Similarity=0.101 Sum_probs=97.3
Q ss_pred ccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccc
Q 010572 257 HKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSK 336 (507)
Q Consensus 257 ~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~ 336 (507)
..++.|+++.+.+.+ ..+ ...+..+++|++|+|++|.+.+. ..+ ...++|++|+|++|.|++.++.
T Consensus 24 ~~L~~L~l~~n~l~~---~~i----~~~~~~l~~L~~L~l~~n~l~~~------~~~-~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 24 AAVRELVLDNCKSND---GKI----EGLTAEFVNLEFLSLINVGLISV------SNL-PKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp TSCSEEECCSCBCBT---TBC----SSCCGGGGGCCEEEEESSCCCCC------SSC-CCCSSCCEEEEESCCCCSCCCH
T ss_pred ccCCEEECCCCCCCh---hhH----HHHHHhCCCCCEEeCcCCCCCCh------hhh-ccCCCCCEEECcCCcCchHHHH
Confidence 458889888877541 112 22356678999999999999876 223 4569999999999999864321
Q ss_pred cccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChH
Q 010572 337 YDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVE 416 (507)
Q Consensus 337 ~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~ 416 (507)
. ... -++|++|+|++|.|+.... ...+....+|++|++++|.++..
T Consensus 90 --------~------------------~~~-----l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 90 --------L------------------AEK-----LPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp --------H------------------HHH-----CTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTS
T ss_pred --------H------------------Hhh-----CCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcch
Confidence 0 000 1678999999999987421 13455677899999999998765
Q ss_pred HHHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 417 TAKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 417 g~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
.. .....+...++|+.|+++.|.+..
T Consensus 136 ~~-~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 136 ND-YRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp TT-HHHHHHTTCSSCCEETTEETTSCB
T ss_pred HH-HHHHHHHhCccCcEecCCCCChhh
Confidence 43 112234456889999999998853
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.67 E-value=7.9e-09 Score=105.87 Aligned_cols=164 Identities=18% Similarity=0.097 Sum_probs=107.8
Q ss_pred CCccEEEeecCCCChhHHHHHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCch
Q 010572 225 ETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRD 304 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~ 304 (507)
..+++|+|++|.+++-....+ . . ....++.|.++.+++.+. + ..++..+++|++|+|++|+|...
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~----~-~--~l~~L~~L~L~~N~i~~i-----~---~~~~~~l~~L~~L~Ls~N~l~~~ 103 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWT----P-T--RLTNLHSLLLSHNHLNFI-----S---SEAFVPVPNLRYLDLSSNHLHTL 103 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSS----S-S--CCTTCCEEECCSSCCCEE-----C---TTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCEEECCCCCCCccChhhh----h-h--cccccCEEECCCCcCCcc-----C---hhhccCCCCCCEEECCCCcCCcC
Confidence 468999999999876332111 0 0 124578888887765432 1 12467889999999999999875
Q ss_pred HHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCC
Q 010572 305 FGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIG 384 (507)
Q Consensus 305 g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~ 384 (507)
.... +...++|++|+|++|.|++..+. ++... ..|++|+|++|.
T Consensus 104 ~~~~-----~~~l~~L~~L~L~~N~i~~~~~~--------~~~~l-----------------------~~L~~L~L~~N~ 147 (361)
T 2xot_A 104 DEFL-----FSDLQALEVLLLYNNHIVVVDRN--------AFEDM-----------------------AQLQKLYLSQNQ 147 (361)
T ss_dssp CTTT-----TTTCTTCCEEECCSSCCCEECTT--------TTTTC-----------------------TTCCEEECCSSC
T ss_pred CHHH-----hCCCcCCCEEECCCCcccEECHH--------HhCCc-----------------------ccCCEEECCCCc
Confidence 4322 24569999999999999853221 11111 567888888888
Q ss_pred CCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCC--ccEEEccCCCCChh
Q 010572 385 LGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPE--LVEVNAGYNLMPLE 444 (507)
Q Consensus 385 l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~--L~~L~Ls~N~l~~~ 444 (507)
|+......+. .+....+|++|+|++|.|+.-....+... +. |+.|+|++|++.-+
T Consensus 148 l~~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l----~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 148 ISRFPVELIK-DGNKLPKLMLLDLSSNKLKKLPLTDLQKL----PAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCSCCGGGTC-----CTTCCEEECCSSCCCCCCHHHHHHS----CHHHHTTEECCSSCEECC
T ss_pred CCeeCHHHhc-CcccCCcCCEEECCCCCCCccCHHHhhhc----cHhhcceEEecCCCccCC
Confidence 8764322211 11345679999999999887655555543 33 57889999998743
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.63 E-value=2.1e-08 Score=94.04 Aligned_cols=128 Identities=18% Similarity=0.076 Sum_probs=87.7
Q ss_pred CCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhh
Q 010572 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKF 370 (507)
Q Consensus 291 L~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~ 370 (507)
-+.++.+++.+..... ....+|++|+|++|.|++.... .+...
T Consensus 9 ~~~v~c~~~~l~~~p~--------~~~~~l~~L~l~~n~l~~~~~~--------~~~~l--------------------- 51 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPT--------GIPAQTTYLDLETNSLKSLPNG--------VFDEL--------------------- 51 (208)
T ss_dssp TTEEECCSSCCSSCCS--------CCCTTCSEEECCSSCCCCCCTT--------TTTTC---------------------
T ss_pred CCEEEecCCCccCCCC--------CCCCCCcEEEcCCCccCcCChh--------hhccc---------------------
Confidence 3567777777765321 1236899999999999853221 11111
Q ss_pred hcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHH
Q 010572 371 FGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIIC 450 (507)
Q Consensus 371 l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~ 450 (507)
.+|++|+|++|.|+.... ..+....+|++|+|++|.++.... ..+...++|++|++++|.|+....
T Consensus 52 --~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~---- 117 (208)
T 2o6s_A 52 --TSLTQLYLGGNKLQSLPN----GVFNKLTSLTYLNLSTNQLQSLPN----GVFDKLTQLKELALNTNQLQSLPD---- 117 (208)
T ss_dssp --TTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----
T ss_pred --ccCcEEECCCCccCccCh----hhcCCCCCcCEEECCCCcCCccCH----hHhcCccCCCEEEcCCCcCcccCH----
Confidence 568999999999975321 234456789999999999875432 234556789999999999985332
Q ss_pred HHHhcCCCCccEEEecCCCC
Q 010572 451 SALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 451 ~aL~~~~~~L~~LdL~~N~~ 470 (507)
.++.. ..+|+.|+|++|.+
T Consensus 118 ~~~~~-l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 118 GVFDK-LTQLKDLRLYQNQL 136 (208)
T ss_dssp TTTTT-CTTCCEEECCSSCC
T ss_pred hHhcc-CCcCCEEECCCCcc
Confidence 12332 36899999999988
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.61 E-value=4.2e-08 Score=110.11 Aligned_cols=190 Identities=16% Similarity=0.082 Sum_probs=96.2
Q ss_pred HHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccch
Q 010572 282 VSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLS 361 (507)
Q Consensus 282 ~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~ 361 (507)
...+..+++|+.|+|++|.+..-.. .+. ..++|++|+|++|.|+ .++. .++...+|+.|.+.+|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~-~l~~L~~L~Ls~N~l~-~lp~--------~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISA-----NIF-KYDFLTRLYLNGNSLT-ELPA--------EIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCG-----GGG-GCCSCSCCBCTTSCCS-CCCG--------GGGGGTTCCEEECTTSC
T ss_pred hhhhccCCCCcEEECCCCCCCCCCh-----hhc-CCCCCCEEEeeCCcCc-ccCh--------hhhCCCCCCEEeCcCCc
Confidence 3456778889999999999874322 122 3588999999999998 3332 45566667777776665
Q ss_pred hHHHHHHhhhc--CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhh--------C------
Q 010572 362 HIAASLGKFFG--TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKL--------M------ 425 (507)
Q Consensus 362 ~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~--------L------ 425 (507)
+. .++..+. .+|++|+|++|.|+. |...+....+|++|+|++|.++......+... +
T Consensus 282 -l~-~lp~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 282 -LT-SLPAELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp -CS-SCCSSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred -CC-ccChhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 11 3444444 789999999999974 23335566789999999999987666554321 1
Q ss_pred -CCCCCccEEEccCCCCChhHHHHHHHHHhc---CCCCccEEEecCCCCC--CC--------cc----H----HHHHHHH
Q 010572 426 -PLAPELVEVNAGYNLMPLESLTIICSALKV---AKGHLQRLDLTGNNWE--LQ--------PS----H----VSMLSEF 483 (507)
Q Consensus 426 -~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~---~~~~L~~LdL~~N~~~--~~--------~~----~----~~~l~~~ 483 (507)
..-..|+.|+++.|.........|...... ....++...++.|.+. +. +. + ..++.++
T Consensus 355 ~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I 434 (727)
T 4b8c_D 355 IPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQI 434 (727)
T ss_dssp CCCCCC-----------------------------------------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHH
T ss_pred CcCccccceeEeecccccccccCCccccccchhhcccccceeeeeccccccccCccccccccchhhhhhhhhhhHHHHHH
Confidence 111247888888772111111111111110 1123445566777651 11 11 1 2355777
Q ss_pred HHcCCCeEEc
Q 010572 484 RHNGLPILIL 493 (507)
Q Consensus 484 ~~~~~~i~~~ 493 (507)
.+.++.|+++
T Consensus 435 ~~~~pDIIcL 444 (727)
T 4b8c_D 435 LSYDSDLLCL 444 (727)
T ss_dssp HHSCCSSEEE
T ss_pred HHcCCCeEEE
Confidence 7888899876
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.60 E-value=6.5e-08 Score=88.53 Aligned_cols=137 Identities=12% Similarity=0.023 Sum_probs=81.7
Q ss_pred hCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHH
Q 010572 286 SSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAA 365 (507)
Q Consensus 286 ~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~ 365 (507)
...++|++|+|++|++..- . .+....++|+.|+|++|.|++. . .+...
T Consensus 16 ~~~~~L~~L~l~~n~l~~i--~----~~~~~~~~L~~L~Ls~N~l~~~-~---------~l~~l---------------- 63 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI--E----NLGATLDQFDAIDFSDNEIRKL-D---------GFPLL---------------- 63 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC--C----CGGGGTTCCSEEECCSSCCCEE-C---------CCCCC----------------
T ss_pred CCcCCceEEEeeCCCCchh--H----HhhhcCCCCCEEECCCCCCCcc-c---------ccccC----------------
Confidence 4466888899999888753 1 1223334889999999888752 1 11111
Q ss_pred HHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhH
Q 010572 366 SLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLES 445 (507)
Q Consensus 366 ~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g 445 (507)
++|++|+|++|.|+...... +....+|++|+|++|.|+.-.. + ..+...++|+.|++++|.+....
T Consensus 64 -------~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~--~-~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 64 -------RRLKTLLVNNNRICRIGEGL----DQALPDLTELILTNNSLVELGD--L-DPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp -------SSCCEEECCSSCCCEECSCH----HHHCTTCCEEECCSCCCCCGGG--G-GGGGGCTTCCEEECCSSGGGGST
T ss_pred -------CCCCEEECCCCcccccCcch----hhcCCCCCEEECCCCcCCcchh--h-HhhhcCCCCCEEEecCCCCCCcH
Confidence 45677788888876532111 1335578888888888765321 0 12334567888888888886432
Q ss_pred HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 446 LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 446 ~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
... ..++.. .++|+.||+++|..
T Consensus 130 ~~~-~~~~~~-l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 130 HYR-LYVIYK-VPQVRVLDFQKVKL 152 (176)
T ss_dssp THH-HHHHHH-CTTCSEETTEECCH
T ss_pred hHH-HHHHHH-CCccceeCCCcCCH
Confidence 110 112222 24688888888763
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.55 E-value=5.7e-08 Score=90.48 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=33.4
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
..|++|+|++|.|+.... .++....+|++|+|++|.++...+ ..+...++|++|+|++|.+.
T Consensus 78 ~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISN----KMFLGLHQLKTLNLYDNQISCVMP----GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECCSCCCCEECS----SSSTTCTTCCEEECCSSCCCEECT----TSSTTCTTCCEEECTTCCBC
T ss_pred ccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCCeeCH----HHhhcCCCCCEEEeCCCCcc
Confidence 456666666666654321 123334556666666666654322 22333455666666666665
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.51 E-value=1.4e-07 Score=86.17 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=33.1
Q ss_pred CCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCCCCCccHHHH
Q 010572 400 ELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNWELQPSHVSM 479 (507)
Q Consensus 400 n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~~~~~~~~~~ 479 (507)
..+|++|+|++|.++.... ..+...++|+.|++++|.|+.-.. .++.. ..+|+.|+|++|.+.-.......
T Consensus 75 l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~-l~~L~~L~l~~N~~~~~~~~l~~ 145 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPN----GVFDKLTQLKELALDTNQLKSVPD----GIFDR-LTSLQKIWLHTNPWDCSCPRIDY 145 (177)
T ss_dssp CTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTT-CTTCCEEECCSSCBCCCHHHHHH
T ss_pred CCccCEEECCCCCccccCH----HHhhCCcccCEEECcCCcceEeCH----HHhcC-CcccCEEEecCCCeeccCccHHH
Confidence 3345555555555443211 112233455555555555542111 11111 23456666666655222222344
Q ss_pred HHHHHHcC
Q 010572 480 LSEFRHNG 487 (507)
Q Consensus 480 l~~~~~~~ 487 (507)
+.+..++.
T Consensus 146 l~~~~~~~ 153 (177)
T 2o6r_A 146 LSRWLNKN 153 (177)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhC
Confidence 44444433
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.50 E-value=3.4e-09 Score=115.71 Aligned_cols=137 Identities=19% Similarity=0.161 Sum_probs=90.9
Q ss_pred HHHhCCCCCCEEE-ccCCCCCchHHHHHH----HHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCcccc
Q 010572 283 SFLSSGRSLCSLK-LRHCHLDRDFGRMVF----SSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRL 357 (507)
Q Consensus 283 ~~L~~~~sL~~L~-LS~N~L~~~g~~~L~----~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~l 357 (507)
..+..+++|+.|+ ++.|.+.+-....+. ..+ +...|+.|+|++|.|++ ++. ++
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~-lp~---------~~---------- 460 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHKDLTV-LCH---------LE---------- 460 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSS-CCC---------GG----------
T ss_pred HHHHHHHhcccCcchhhcccchhhhhhhhccccccc--CccCceEEEecCCCCCC-CcC---------cc----------
Confidence 3455556666676 555544322111110 111 12469999999999985 110 00
Q ss_pred ccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEcc
Q 010572 358 LNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAG 437 (507)
Q Consensus 358 l~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls 437 (507)
. -.+|+.|+|++|.|+. +...+....+|++|+|++|.|+.- . .+...++|+.|+|+
T Consensus 461 -----------~--l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-----p-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 461 -----------Q--LLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-----D-GVANLPRLQELLLC 516 (567)
T ss_dssp -----------G--GTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GGTTCSSCCEEECC
T ss_pred -----------c--cccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCC-----c-ccCCCCCCcEEECC
Confidence 0 0578999999999984 233566678999999999999862 2 45566899999999
Q ss_pred CCCCChhH-HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 438 YNLMPLES-LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 438 ~N~l~~~g-~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
+|.|+... . ..+.. ..+|+.|+|++|.+
T Consensus 517 ~N~l~~~~~p----~~l~~-l~~L~~L~L~~N~l 545 (567)
T 1dce_A 517 NNRLQQSAAI----QPLVS-CPRLVLLNLQGNSL 545 (567)
T ss_dssp SSCCCSSSTT----GGGGG-CTTCCEEECTTSGG
T ss_pred CCCCCCCCCc----HHHhc-CCCCCEEEecCCcC
Confidence 99998542 2 22333 36899999999998
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.49 E-value=3.3e-08 Score=92.27 Aligned_cols=137 Identities=19% Similarity=0.155 Sum_probs=92.9
Q ss_pred HHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchh
Q 010572 283 SFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSH 362 (507)
Q Consensus 283 ~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~ 362 (507)
..+..+++|++|+|++|.+.+-. .+ ...++|++|+|++|.|+. ++.
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~--~~-----~~l~~L~~L~l~~n~l~~-l~~-------------------------- 87 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS--SL-----SGMENLRILSLGRNLIKK-IEN-------------------------- 87 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC--CH-----HHHTTCCEEEEEEEEECS-CSS--------------------------
T ss_pred HHHhcCCCCCEEECCCCCCcccc--cc-----ccCCCCCEEECCCCCccc-ccc--------------------------
Confidence 35677888999999999887732 22 223789999999988863 110
Q ss_pred HHHHHHhhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCC
Q 010572 363 IAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMP 442 (507)
Q Consensus 363 ~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~ 442 (507)
....+ ++|++|+|++|.|+... .+....+|++|+|++|.++.-... ..+...++|++|++++|.+.
T Consensus 88 ~~~~~-----~~L~~L~L~~N~l~~l~------~~~~l~~L~~L~l~~N~i~~~~~~---~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 88 LDAVA-----DTLEELWISYNQIASLS------GIEKLVNLRVLYMSNNKITNWGEI---DKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHH-----HHCSEEEEEEEECCCHH------HHHHHHHSSEEEESEEECCCHHHH---HHHTTTTTCSEEEECSCHHH
T ss_pred hhhcC-----CcCCEEECcCCcCCcCC------ccccCCCCCEEECCCCcCCchhHH---HHHhcCCCCCEEEecCCccc
Confidence 11111 46899999999998642 233456799999999999874431 12344578999999999986
Q ss_pred hhH------HHHHHHHHhcCCCCccEEEecCCCC
Q 010572 443 LES------LTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 443 ~~g------~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
... ......++... .+|+.|| +|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~l-~~L~~Ld--~~~i 184 (198)
T 1ds9_A 154 NDYKENNATSEYRIEVVKRL-PNLKKLD--GMPV 184 (198)
T ss_dssp HHHHTTTTHHHHHHHHHHHC-SSCSEEC--CGGG
T ss_pred cccccccchHHHHHHHHHhC-CCcEEEC--Cccc
Confidence 542 22333445543 6799987 7776
No 135
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=2.3e-07 Score=86.00 Aligned_cols=67 Identities=7% Similarity=-0.048 Sum_probs=30.3
Q ss_pred CcEEEeccCC-CCchhHHHHHHhhcCCCCCCEEeccCCC-CChHHHHHHHhhCCCCCCccEEEccCCC-CChhH
Q 010572 375 VQVLNIGAIG-LGSSGFRVLQDGVTKELKLVNINISKNR-GGVETAKFLSKLMPLAPELVEVNAGYNL-MPLES 445 (507)
Q Consensus 375 L~~L~Ls~n~-l~~~G~~~L~~aL~~n~~L~~LdLs~N~-i~~~g~~~L~~~L~~n~~L~~L~Ls~N~-l~~~g 445 (507)
|++|+|++|. |+|.|.+.|+..-....+|++|+|++|. ||+.|...|+. .++|++|+++++. +++.|
T Consensus 87 L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~----~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 87 VEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH----FRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG----CTTCCEEEEESCTTCCCHH
T ss_pred CCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc----CCCCCEEECCCCCCCCchH
Confidence 4444444442 4444444444310001235555555543 55555554432 2455555555543 55544
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.44 E-value=1.3e-07 Score=88.07 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=53.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|++|+|++|.|+... ..++....+|++|+|++|.|+.... ..+...++|+.|+|++|.|...... +
T Consensus 54 ~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~----~ 121 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGENKIKEISN----KMFLGLHQLKTLNLYDNQISCVMPG----S 121 (192)
T ss_dssp TTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSCCCCEECS----SSSTTCTTCCEEECCSSCCCEECTT----S
T ss_pred CCCCEEECCCCCCCCcC----HhHcCCcccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCCeeCHH----H
Confidence 45677777777776432 2234455678888888888775432 2334456788888888888743211 2
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
+.. ..+|+.|+|++|.|
T Consensus 122 ~~~-l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 122 FEH-LNSLTSLNLASNPF 138 (192)
T ss_dssp STT-CTTCCEEECTTCCB
T ss_pred hhc-CCCCCEEEeCCCCc
Confidence 222 25688888888887
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.37 E-value=2.3e-07 Score=86.61 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=19.5
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCC
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGG 332 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~ 332 (507)
++|++|+|++|.|..-. . .+ ....+|++|+|++|.|++
T Consensus 31 ~~l~~L~L~~n~i~~ip-~----~~-~~l~~L~~L~Ls~N~i~~ 68 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-K----EL-SNYKHLTLIDLSNNRIST 68 (193)
T ss_dssp TTCCEEECCSSCCCSCC-G----GG-GGCTTCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCchhH-H----Hh-hcccCCCEEECCCCcCCE
Confidence 35666666666665321 1 12 234556666666666553
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.36 E-value=3.2e-07 Score=83.75 Aligned_cols=124 Identities=16% Similarity=0.086 Sum_probs=83.1
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHH
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLG 368 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~ 368 (507)
++|++|+|++|++....... ....++|++|+|++|.|++.... .+...
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l------------------- 75 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGV-----FDKLTQLTKLSLSQNQIQSLPDG--------VFDKL------------------- 75 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCTT--------TTTTC-------------------
T ss_pred CCCcEEEeCCCcccEeCHHH-----hcCcccccEEECCCCcceEeChh--------HccCC-------------------
Confidence 57899999999987644321 23458899999999988752211 11110
Q ss_pred hhhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh--HH
Q 010572 369 KFFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE--SL 446 (507)
Q Consensus 369 ~~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~--g~ 446 (507)
.+|++|+|++|.|+.... ..+....+|++|+|++|.++.-.. ..+...++|+.|++++|.+... .+
T Consensus 76 ----~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 76 ----TKLTILYLHENKLQSLPN----GVFDKLTQLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp ----TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred ----CccCEEECCCCCccccCH----HHhhCCcccCEEECcCCcceEeCH----HHhcCCcccCEEEecCCCeeccCccH
Confidence 568889999998875321 224456789999999999874322 2344567899999999999753 35
Q ss_pred HHHHHHHhcC
Q 010572 447 TIICSALKVA 456 (507)
Q Consensus 447 ~~L~~aL~~~ 456 (507)
..+..-+...
T Consensus 144 ~~l~~~~~~~ 153 (177)
T 2o6r_A 144 DYLSRWLNKN 153 (177)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhC
Confidence 5565555543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.34 E-value=1.2e-06 Score=80.07 Aligned_cols=109 Identities=17% Similarity=0.081 Sum_probs=79.5
Q ss_pred CCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEEeccCCCCchhHHHHHH
Q 010572 316 ASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLNIGAIGLGSSGFRVLQD 395 (507)
Q Consensus 316 ~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~Ls~n~l~~~G~~~L~~ 395 (507)
+.++|++|+|++|.|+.. +. + ..+.++|++|+|++|.|+.. .
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~------------------------------~-~~~~~~L~~L~Ls~N~l~~~------~ 58 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN------------------------------L-GATLDQFDAIDFSDNEIRKL------D 58 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC------------------------------G-GGGTTCCSEEECCSSCCCEE------C
T ss_pred CcCCceEEEeeCCCCchh-HH------------------------------h-hhcCCCCCEEECCCCCCCcc------c
Confidence 358899999999999841 10 0 00114799999999999864 4
Q ss_pred hhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 396 GVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 396 aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
.+....+|++|+|++|.++.-....+.. .++|+.|+|++|.|++-.. + ..+.. ..+|+.|+|++|.+
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----l~~L~~L~L~~N~i~~~~~--~-~~l~~-l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQA----LPDLTELILTNNSLVELGD--L-DPLAS-LKSLTYLCILRNPV 125 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHH----CTTCCEEECCSCCCCCGGG--G-GGGGG-CTTCCEEECCSSGG
T ss_pred ccccCCCCCEEECCCCcccccCcchhhc----CCCCCEEECCCCcCCcchh--h-Hhhhc-CCCCCEEEecCCCC
Confidence 5667788999999999998643333333 3789999999999986331 0 13443 36899999999998
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.32 E-value=4.5e-08 Score=91.38 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=106.0
Q ss_pred CCccEEEeecCCCChhHHH-----HHHHHhccCCcccccccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCC
Q 010572 225 ETLASLEFLHCKLSPSFVE-----GICRSLCSKRKRIHKIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHC 299 (507)
Q Consensus 225 ~~L~~LdLs~~~ls~~~~~-----~L~~~L~~~~~~~~~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N 299 (507)
..++.++++++.+++.... ..+..+ ..++.|+++.+.+.+ ++ .+..+++|++|+|++|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l-------~~L~~L~ls~n~l~~-----l~-----~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTL-------KACKHLALSTNNIEK-----IS-----SLSGMENLRILSLGRN 80 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHT-------TTCSEEECSEEEESC-----CC-----CHHHHTTCCEEEEEEE
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcC-------CCCCEEECCCCCCcc-----cc-----ccccCCCCCEEECCCC
Confidence 5677777777777665432 122222 358888888877643 22 3456789999999999
Q ss_pred CCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhcCCCcEEE
Q 010572 300 HLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFGTSVQVLN 379 (507)
Q Consensus 300 ~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~~~L~~L~ 379 (507)
.+..-.. ... ..++|++|+|++|.|++. + .+... ++|++|+
T Consensus 81 ~l~~l~~--~~~----~~~~L~~L~L~~N~l~~l-~------------------------------~~~~l--~~L~~L~ 121 (198)
T 1ds9_A 81 LIKKIEN--LDA----VADTLEELWISYNQIASL-S------------------------------GIEKL--VNLRVLY 121 (198)
T ss_dssp EECSCSS--HHH----HHHHCSEEEEEEEECCCH-H------------------------------HHHHH--HHSSEEE
T ss_pred Ccccccc--hhh----cCCcCCEEECcCCcCCcC-C------------------------------ccccC--CCCCEEE
Confidence 9985321 211 237899999999999751 0 01111 5689999
Q ss_pred eccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHH------HHHHHhhCCCCCCccEEEccCCCCCh
Q 010572 380 IGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVET------AKFLSKLMPLAPELVEVNAGYNLMPL 443 (507)
Q Consensus 380 Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g------~~~L~~~L~~n~~L~~L~Ls~N~l~~ 443 (507)
|++|.|+..+.- ..+....+|++|++++|.++... ......++...++|+.|| +|.+.+
T Consensus 122 l~~N~i~~~~~~---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 122 MSNNKITNWGEI---DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ESEEECCCHHHH---HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCcCCchhHH---HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999999875431 34556778999999999986653 233344455568899987 777765
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.31 E-value=6.3e-07 Score=83.63 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=75.1
Q ss_pred CEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhh
Q 010572 292 CSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFF 371 (507)
Q Consensus 292 ~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l 371 (507)
+.+++++|+|+.-.. . ...+|++|+|++|.|+.. +. .+...
T Consensus 13 ~~l~~~~~~l~~ip~-----~---~~~~l~~L~L~~n~i~~i-p~--------~~~~l---------------------- 53 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-----G---IPRDVTELYLDGNQFTLV-PK--------ELSNY---------------------- 53 (193)
T ss_dssp TEEECTTSCCSSCCS-----C---CCTTCCEEECCSSCCCSC-CG--------GGGGC----------------------
T ss_pred CEEEcCCCCCCcCCC-----C---CCCCCCEEECCCCcCchh-HH--------Hhhcc----------------------
Confidence 567888887765321 1 125788888888888631 10 11111
Q ss_pred cCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 372 GTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 372 ~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
.+|++|+|++|.|+.... .++.....|++|+|++|.|+..... ++...++|+.|+|++|.|..-.. .
T Consensus 54 -~~L~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N~l~~i~~~----~f~~l~~L~~L~L~~N~l~~~~~----~ 120 (193)
T 2wfh_A 54 -KHLTLIDLSNNRISTLSN----QSFSNMTQLLTLILSYNRLRCIPPR----TFDGLKSLRLLSLHGNDISVVPE----G 120 (193)
T ss_dssp -TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTT----TTTTCTTCCEEECCSSCCCBCCT----T
T ss_pred -cCCCEEECCCCcCCEeCH----hHccCCCCCCEEECCCCccCEeCHH----HhCCCCCCCEEECCCCCCCeeCh----h
Confidence 457777777777765321 2344456788888888877654322 33445678888888888763221 1
Q ss_pred HHhcCCCCccEEEecCCCC
Q 010572 452 ALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~ 470 (507)
++.. ..+|+.|+|++|.|
T Consensus 121 ~~~~-l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 121 AFND-LSALSHLAIGANPL 138 (193)
T ss_dssp TTTT-CTTCCEEECCSSCE
T ss_pred hhhc-CccccEEEeCCCCe
Confidence 2222 24678888888877
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.22 E-value=8.4e-07 Score=99.50 Aligned_cols=133 Identities=18% Similarity=0.089 Sum_probs=82.6
Q ss_pred cCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhhhc--CCCcEEEeccCCCCchhHHH
Q 010572 315 EASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKFFG--TSVQVLNIGAIGLGSSGFRV 392 (507)
Q Consensus 315 ~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~l~--~~L~~L~Ls~n~l~~~G~~~ 392 (507)
.....|+.|+|++|.|.. ++. .+....+|+.|.+.+|. +. .++..+. .+|++|+|++|.|+.
T Consensus 221 ~~l~~L~~L~Ls~n~l~~-l~~--------~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l~~L~~L~Ls~N~l~~----- 284 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFN-ISA--------NIFKYDFLTRLYLNGNS-LT-ELPAEIKNLSNLRVLDLSHNRLTS----- 284 (727)
T ss_dssp -CCCCCCEEECTTSCCSC-CCG--------GGGGCCSCSCCBCTTSC-CS-CCCGGGGGGTTCCEEECTTSCCSS-----
T ss_pred ccCCCCcEEECCCCCCCC-CCh--------hhcCCCCCCEEEeeCCc-Cc-ccChhhhCCCCCCEEeCcCCcCCc-----
Confidence 456899999999999984 221 33355667777776665 11 3444444 889999999999983
Q ss_pred HHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH--------HHhcC------CC
Q 010572 393 LQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS--------ALKVA------KG 458 (507)
Q Consensus 393 L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~--------aL~~~------~~ 458 (507)
|...+....+|++|+|++|.|+. +...+...++|+.|+|++|.|.......+.. -|..+ ..
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cChhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 23345556789999999999873 2233556678999999999998644333321 12221 13
Q ss_pred CccEEEecCC
Q 010572 459 HLQRLDLTGN 468 (507)
Q Consensus 459 ~L~~LdL~~N 468 (507)
.|+.|+++.|
T Consensus 360 ~l~~l~l~~n 369 (727)
T 4b8c_D 360 ERRFIEINTD 369 (727)
T ss_dssp C---------
T ss_pred ccceeEeecc
Confidence 5777888777
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.14 E-value=8.6e-07 Score=80.92 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=68.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..+++|+|++|.|+... ...+....+|++|+|++|.|+.-.. .++...++|++|+|++|.|..-.. .+
T Consensus 30 ~~l~~L~L~~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~----~~ 97 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLE----PGVFDRLTQLTRLDLDNNQLTVLPA----GVFDKLTQLTQLSLNDNQLKSIPR----GA 97 (170)
T ss_dssp TTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TT
T ss_pred CCCcEEEcCCCcCCccC----hhhhcCcccCCEEECCCCCcCccCh----hhccCCCCCCEEECCCCccCEeCH----HH
Confidence 56788999999987532 2234456679999999999875332 233455789999999999974221 12
Q ss_pred HhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCe
Q 010572 453 LKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i 490 (507)
+.. ..+|+.|+|++|.|.-.......+.......+.+
T Consensus 98 ~~~-l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~ 134 (170)
T 3g39_A 98 FDN-LKSLTHIWLLNNPWDCACSDILYLSRWISQHPGL 134 (170)
T ss_dssp TTT-CTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred hcC-CCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcce
Confidence 332 3579999999999843433344455555554444
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.12 E-value=1.3e-06 Score=80.24 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=69.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
..|++|+|++|.|+... ...+....+|++|+|++|.|+.--. .++...++|+.|+|++|.|..-.. .+
T Consensus 33 ~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~~l~~L~~L~L~~N~l~~l~~----~~ 100 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE----PGVFDHLVNLQQLYFNSNKLTAIPT----GVFDKLTQLTQLDLNDNHLKSIPR----GA 100 (174)
T ss_dssp TTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TT
T ss_pred CCCcEEEeCCCCccccC----HHHhcCCcCCCEEECCCCCCCccCh----hHhCCcchhhEEECCCCccceeCH----HH
Confidence 56788999999987532 2234456779999999999875321 233455789999999999974211 12
Q ss_pred HhcCCCCccEEEecCCCCCCCccHHHHHHHHHHcCCCe
Q 010572 453 LKVAKGHLQRLDLTGNNWELQPSHVSMLSEFRHNGLPI 490 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~~~~~~~~~~l~~~~~~~~~i 490 (507)
+.. ..+|+.|+|++|.|.-.......+.........+
T Consensus 101 ~~~-l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~ 137 (174)
T 2r9u_A 101 FDN-LKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSI 137 (174)
T ss_dssp TTT-CTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred hcc-ccCCCEEEeCCCCcccccccHHHHHHHHHhcccc
Confidence 332 3579999999999854444445555555555444
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.09 E-value=5.5e-06 Score=75.51 Aligned_cols=120 Identities=12% Similarity=-0.008 Sum_probs=73.2
Q ss_pred CCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHh
Q 010572 290 SLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGK 369 (507)
Q Consensus 290 sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~ 369 (507)
+.+.+++++|+|..-.. . ....|++|+|++|.|++..+. .+...
T Consensus 10 ~~~~l~~s~n~l~~ip~-----~---~~~~l~~L~L~~N~i~~~~~~--------~~~~l-------------------- 53 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-----G---IPTTTQVLYLYDNQITKLEPG--------VFDRL-------------------- 53 (170)
T ss_dssp ETTEEECTTSCCSSCCS-----C---CCTTCSEEECCSSCCCCCCTT--------TTTTC--------------------
T ss_pred CCCEEEeCCCCcCccCc-----c---CCCCCcEEEcCCCcCCccChh--------hhcCc--------------------
Confidence 35678888887765321 1 126788888888888753221 11110
Q ss_pred hhcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh--HHH
Q 010572 370 FFGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE--SLT 447 (507)
Q Consensus 370 ~l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~--g~~ 447 (507)
..|++|+|++|+|+.... +++....+|++|+|++|.|+.-.. .++...++|+.|+|++|++.-. ...
T Consensus 54 ---~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~~~c~c~~l~ 122 (170)
T 3g39_A 54 ---TQLTRLDLDNNQLTVLPA----GVFDKLTQLTQLSLNDNQLKSIPR----GAFDNLKSLTHIWLLNNPWDCACSDIL 122 (170)
T ss_dssp ---TTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCBCTTBGGGH
T ss_pred ---ccCCEEECCCCCcCccCh----hhccCCCCCCEEECCCCccCEeCH----HHhcCCCCCCEEEeCCCCCCCCchhHH
Confidence 457778888888764321 123345678888888888764322 2344557788889998888644 355
Q ss_pred HHHHHHhcC
Q 010572 448 IICSALKVA 456 (507)
Q Consensus 448 ~L~~aL~~~ 456 (507)
.+..-+++.
T Consensus 123 ~l~~~l~~~ 131 (170)
T 3g39_A 123 YLSRWISQH 131 (170)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 555555543
No 146
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.06 E-value=2.4e-07 Score=94.29 Aligned_cols=181 Identities=14% Similarity=0.053 Sum_probs=87.6
Q ss_pred CCcCeeecccccChhhHHHHHHHHhhCCCCccEEEeecCCCChhHHHHHHHHhccCCcccccccc-eeccccccccCCCC
Q 010572 197 SKLQSLVLRWIRFEEHVQALCKLLIQNSETLASLEFLHCKLSPSFVEGICRSLCSKRKRIHKIEN-LSIDISSFIENCPS 275 (507)
Q Consensus 197 ~~L~~L~Ls~~~~~~~~~~l~~~L~~~~~~L~~LdLs~~~ls~~~~~~L~~~L~~~~~~~~~l~~-L~l~~~~~le~~~~ 275 (507)
..+++|+|++|... .+-+..+.++++|++|+|++|.+.+......+..| ..+.. +.+..+++..
T Consensus 30 ~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L-------~~l~~~l~~~~N~l~~---- 94 (350)
T 4ay9_X 30 RNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL-------PKLHEIRIEKANNLLY---- 94 (350)
T ss_dssp TTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC-------TTCCEEEEEEETTCCE----
T ss_pred CCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc-------hhhhhhhcccCCcccc----
Confidence 46889999887432 11111235678999999999986432211100000 11111 2222222211
Q ss_pred cchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcC-CCCCCcccccccCCchhhcccC-CCcC
Q 010572 276 SVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSG-NSIGGWLSKYDRSGPLFSLGAG-KSLQ 353 (507)
Q Consensus 276 ~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~-N~L~~~l~~~~~~~l~~~L~~~-~~L~ 353 (507)
++ ..++..+++|++|++++|++....... . .....+..|++++ |.++..... ++... ..++
T Consensus 95 -l~---~~~f~~l~~L~~L~l~~n~l~~~~~~~----~-~~~~~l~~l~l~~~~~i~~l~~~--------~f~~~~~~l~ 157 (350)
T 4ay9_X 95 -IN---PEAFQNLPNLQYLLISNTGIKHLPDVH----K-IHSLQKVLLDIQDNINIHTIERN--------SFVGLSFESV 157 (350)
T ss_dssp -EC---TTSBCCCTTCCEEEEEEECCSSCCCCT----T-CCBSSCEEEEEESCTTCCEECTT--------SSTTSBSSCE
T ss_pred -cC---chhhhhccccccccccccccccCCchh----h-cccchhhhhhhcccccccccccc--------chhhcchhhh
Confidence 11 124567788888888888886543211 1 1235677777765 455521110 11111 1233
Q ss_pred ccccccchhHHHHHHh-hhc-CCCcEEEecc-CCCCchhHHHHHHhhcCCCCCCEEeccCCCCCh
Q 010572 354 SLRLLNLSHIAASLGK-FFG-TSVQVLNIGA-IGLGSSGFRVLQDGVTKELKLVNINISKNRGGV 415 (507)
Q Consensus 354 ~L~ll~l~~~~~~L~~-~l~-~~L~~L~Ls~-n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~ 415 (507)
.|.+.+|. + ..+.. ++. ..+++|++++ |.++.... +++....+|++|||++|+|+.
T Consensus 158 ~L~L~~N~-i-~~i~~~~f~~~~L~~l~l~~~n~l~~i~~----~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 158 ILWLNKNG-I-QEIHNSAFNGTQLDELNLSDNNNLEELPN----DVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EEECCSSC-C-CEECTTSSTTEEEEEEECTTCTTCCCCCT----TTTTTEECCSEEECTTSCCCC
T ss_pred hhcccccc-c-cCCChhhccccchhHHhhccCCcccCCCH----HHhccCcccchhhcCCCCcCc
Confidence 34433332 0 01111 111 5577777764 55554321 122334567778888777753
No 147
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.06 E-value=4.2e-07 Score=92.45 Aligned_cols=178 Identities=12% Similarity=0.022 Sum_probs=79.1
Q ss_pred cccceeccccccccCCCCcchHHHHHHHhCCCCCCEEEccCCCCCchHHHHHHHHhccCCCCcc-EEECcCCCCCCcccc
Q 010572 258 KIENLSIDISSFIENCPSSVVVELVSFLSSGRSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLS-ILDLSGNSIGGWLSK 336 (507)
Q Consensus 258 ~l~~L~l~~~~~le~~~~~l~~~L~~~L~~~~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~-~LdLS~N~L~~~l~~ 336 (507)
.++.|+++.+++.. ++. .++..+++|++|+|++|++...... ..+.+.+++. .+.++.|+|+...+.
T Consensus 31 ~l~~L~Ls~N~i~~-----i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 31 NAIELRFVLTKLRV-----IQK---GAFSGFGDLEKIEISQNDVLEVIEA----DVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TCSEEEEESCCCSE-----ECT---TSSTTCTTCCEEEEECCTTCCEECT----TSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCEEEccCCcCCC-----cCH---HHHcCCCCCCEEECcCCCCCCccCh----hHhhcchhhhhhhcccCCcccccCch
Confidence 35666666555422 111 2345566677777777765332111 0112334444 345556666642211
Q ss_pred cccCCchhhcccCCCcCccccccch-hHHHHHHhhhc-CCCcEEEecc-CCCCchhHHHHHHhhcC-CCCCCEEeccCCC
Q 010572 337 YDRSGPLFSLGAGKSLQSLRLLNLS-HIAASLGKFFG-TSVQVLNIGA-IGLGSSGFRVLQDGVTK-ELKLVNINISKNR 412 (507)
Q Consensus 337 ~~~~~l~~~L~~~~~L~~L~ll~l~-~~~~~L~~~l~-~~L~~L~Ls~-n~l~~~G~~~L~~aL~~-n~~L~~LdLs~N~ 412 (507)
++...++|+.|.+.++. ...... .... ..+..|++.+ +.++...... +.. ...+++|+|++|.
T Consensus 99 --------~f~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~~~~----f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 99 --------AFQNLPNLQYLLISNTGIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNS----FVGLSFESVILWLNKNG 165 (350)
T ss_dssp --------SBCCCTTCCEEEEEEECCSSCCCC-TTCCBSSCEEEEEESCTTCCEECTTS----STTSBSSCEEEECCSSC
T ss_pred --------hhhhccccccccccccccccCCch-hhcccchhhhhhhccccccccccccc----hhhcchhhhhhcccccc
Confidence 44555556666655543 000000 0011 3445555543 3444322111 111 1246677777777
Q ss_pred CChHHHHHHHhhCCCCCCccEEEccC-CCCChhHHHHHHHHHhcCCCCccEEEecCCCC
Q 010572 413 GGVETAKFLSKLMPLAPELVEVNAGY-NLMPLESLTIICSALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 413 i~~~g~~~L~~~L~~n~~L~~L~Ls~-N~l~~~g~~~L~~aL~~~~~~L~~LdL~~N~~ 470 (507)
|+.-... .-...+|++|+++. |.++.-.. .++.. ..+|+.|||++|.+
T Consensus 166 i~~i~~~-----~f~~~~L~~l~l~~~n~l~~i~~----~~f~~-l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 166 IQEIHNS-----AFNGTQLDELNLSDNNNLEELPN----DVFHG-ASGPVILDISRTRI 214 (350)
T ss_dssp CCEECTT-----SSTTEEEEEEECTTCTTCCCCCT----TTTTT-EECCSEEECTTSCC
T ss_pred ccCCChh-----hccccchhHHhhccCCcccCCCH----HHhcc-CcccchhhcCCCCc
Confidence 6542111 11223466677653 55543110 11221 24577777777766
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.98 E-value=9.1e-06 Score=74.45 Aligned_cols=119 Identities=12% Similarity=0.008 Sum_probs=73.0
Q ss_pred CCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCCCcccccccCCchhhcccCCCcCccccccchhHHHHHHhh
Q 010572 291 LCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGWLSKYDRSGPLFSLGAGKSLQSLRLLNLSHIAASLGKF 370 (507)
Q Consensus 291 L~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~l~~~~~~~l~~~L~~~~~L~~L~ll~l~~~~~~L~~~ 370 (507)
-+.+++++|+|+.-.. .+ ...|++|+|++|.|++..+. .+...
T Consensus 14 ~~~l~~~~n~l~~iP~-----~~---~~~L~~L~Ls~N~l~~~~~~--------~~~~l--------------------- 56 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-----GI---PTDKQRLWLNNNQITKLEPG--------VFDHL--------------------- 56 (174)
T ss_dssp SSEEECCSSCCSSCCS-----CC---CTTCSEEECCSSCCCCCCTT--------TTTTC---------------------
T ss_pred CcEEEeCCCCCCccCC-----Cc---CCCCcEEEeCCCCccccCHH--------HhcCC---------------------
Confidence 4678888888765321 11 26788888888888753221 11110
Q ss_pred hcCCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh--HHHH
Q 010572 371 FGTSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE--SLTI 448 (507)
Q Consensus 371 l~~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~--g~~~ 448 (507)
..|++|+|++|+|+.... ..+....+|++|+|++|.|+.-.. .++...++|+.|+|++|.+.-. .+..
T Consensus 57 --~~L~~L~Ls~N~l~~i~~----~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~N~~~c~~~~~~~ 126 (174)
T 2r9u_A 57 --VNLQQLYFNSNKLTAIPT----GVFDKLTQLTQLDLNDNHLKSIPR----GAFDNLKSLTHIYLYNNPWDCECRDIMY 126 (174)
T ss_dssp --TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCBCTTBGGGHH
T ss_pred --cCCCEEECCCCCCCccCh----hHhCCcchhhEEECCCCccceeCH----HHhccccCCCEEEeCCCCcccccccHHH
Confidence 457778888888764211 123345678888888888874321 2344557899999999988743 3555
Q ss_pred HHHHHhcC
Q 010572 449 ICSALKVA 456 (507)
Q Consensus 449 L~~aL~~~ 456 (507)
+..-++..
T Consensus 127 l~~~~~~~ 134 (174)
T 2r9u_A 127 LRNWVADH 134 (174)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 55555554
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=2.6e-05 Score=78.29 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=55.2
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCcc-EEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELV-EVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~-~L~Ls~N~l~~~g~~~L~~ 451 (507)
..|++|+|++|.++..+.. +.....+|++|+|++| +..-+.. ++..+++|+ .|++.. .+..-+. .
T Consensus 226 ~~L~~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~-~l~~I~~----~ 291 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA-SVTAIEF----G 291 (329)
T ss_dssp TTCCEEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT-TCCEECT----T
T ss_pred CCCeEEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc-cceEEch----h
Confidence 6789999998888766533 3344567999999888 5543332 344557788 999987 4443221 2
Q ss_pred HHhcCCCCccEEEecCCCC
Q 010572 452 ALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~ 470 (507)
|+... .+|+.|+|.+|.+
T Consensus 292 aF~~c-~~L~~l~l~~n~i 309 (329)
T 3sb4_A 292 AFMGC-DNLRYVLATGDKI 309 (329)
T ss_dssp TTTTC-TTEEEEEECSSCC
T ss_pred hhhCC-ccCCEEEeCCCcc
Confidence 34432 5799999988876
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.44 E-value=0.00013 Score=73.40 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=30.9
Q ss_pred HhCCCCCCEEEccC-CCCCchHHHHHHHHhccCCCCccEEECcCCCCCCc
Q 010572 285 LSSGRSLCSLKLRH-CHLDRDFGRMVFSSLLEASSSLSILDLSGNSIGGW 333 (507)
Q Consensus 285 L~~~~sL~~L~LS~-N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~~~ 333 (507)
|..+++|++|+|++ |.|+...... +....+|+.|+|++|.|++.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~ 71 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKSGLRFV 71 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSSCCCEE
T ss_pred CCCCCCeeEEEccCCCCCCCcChhH-----hccccCCCEEECCCCcccee
Confidence 56677888888885 8887654321 24467888888888888763
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.26 E-value=0.00016 Score=71.20 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=10.2
Q ss_pred CCCCccEEECcCCCCCC
Q 010572 316 ASSSLSILDLSGNSIGG 332 (507)
Q Consensus 316 ~~~~L~~LdLS~N~L~~ 332 (507)
+.+.|++|+||+|.|++
T Consensus 168 ~l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYR 184 (267)
T ss_dssp HCTTCCEEECTTSCCCC
T ss_pred hCCCCCEEECCCCCCCC
Confidence 34566666666666654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.96 E-value=0.00053 Score=68.85 Aligned_cols=84 Identities=21% Similarity=0.189 Sum_probs=44.3
Q ss_pred CCCcEEEecc-CCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGA-IGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~-n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
..|++|+|++ |.|+... ...+....+|++|+|++|.|+...... +...++|+.|+|++|.|+.-.. .
T Consensus 31 ~~L~~L~l~~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~----~ 98 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLE----LRDLRGLGELRNLTIVKSGLRFVAPDA----FHFTPRLSRLNLSFNALESLSW----K 98 (347)
T ss_dssp SCCSEEECCSCSSCCEEC----GGGSCSCCCCSEEECCSSCCCEECTTG----GGSCSCCCEEECCSSCCSCCCS----T
T ss_pred CCeeEEEccCCCCCCCcC----hhHhccccCCCEEECCCCccceeCHHH----hcCCcCCCEEeCCCCccceeCH----H
Confidence 3466667764 6665422 122344556777777777665533222 2334567777777777653110 1
Q ss_pred HHhcCCCCccEEEecCCCC
Q 010572 452 ALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~ 470 (507)
.+.. -+|+.|+|.+|.|
T Consensus 99 ~~~~--~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 99 TVQG--LSLQELVLSGNPL 115 (347)
T ss_dssp TTCS--CCCCEEECCSSCC
T ss_pred Hccc--CCceEEEeeCCCc
Confidence 1111 1267777777766
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.94 E-value=0.0026 Score=62.61 Aligned_cols=85 Identities=25% Similarity=0.118 Sum_probs=52.3
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChh---HHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLE---SLTII 449 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~---g~~~L 449 (507)
+.|++|+|++|.|+... .+...+....+|++|+|++|.|++. ..+.. ++.. +|++|+|++|++... .....
T Consensus 170 ~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp TTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred CCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccC-CcceEEccCCcCccccCcchhHH
Confidence 68899999999987632 1222333466889999999988765 12222 2222 788999999998641 11222
Q ss_pred HHHHhcCCCCccEEE
Q 010572 450 CSALKVAKGHLQRLD 464 (507)
Q Consensus 450 ~~aL~~~~~~L~~Ld 464 (507)
..++.. -++|+.||
T Consensus 244 ~~il~~-~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRER-FPKLLRLD 257 (267)
T ss_dssp HHHHHH-CTTCCEES
T ss_pred HHHHHH-CcccCeEC
Confidence 233332 25688774
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.21 E-value=0.014 Score=58.21 Aligned_cols=77 Identities=9% Similarity=-0.085 Sum_probs=47.1
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCC-EEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLV-NINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~-~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
..|++|+|+.| +...|-. +......|+ .|+|.+ .++.-+. .++..+++|+.|+++.|.+..-+. .
T Consensus 250 ~~L~~l~l~~n-i~~I~~~----aF~~~~~L~~~l~l~~-~l~~I~~----~aF~~c~~L~~l~l~~n~i~~I~~----~ 315 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQR----VFSNCGRLAGTLELPA-SVTAIEF----GAFMGCDNLRYVLATGDKITTLGD----E 315 (329)
T ss_dssp TTCCEEECCTT-CCEECTT----TTTTCTTCCEEEEECT-TCCEECT----TTTTTCTTEEEEEECSSCCCEECT----T
T ss_pred CCCCEEECCcc-cceehHH----HhhCChhccEEEEEcc-cceEEch----hhhhCCccCCEEEeCCCccCccch----h
Confidence 47888888876 6554422 234455688 888887 4443332 244556788999988888865332 2
Q ss_pred HHhcCCCCccEEE
Q 010572 452 ALKVAKGHLQRLD 464 (507)
Q Consensus 452 aL~~~~~~L~~Ld 464 (507)
++.. ..+|+.|.
T Consensus 316 aF~~-~~~L~~ly 327 (329)
T 3sb4_A 316 LFGN-GVPSKLIY 327 (329)
T ss_dssp TTCT-TCCCCEEE
T ss_pred hhcC-Ccchhhhc
Confidence 3432 24677765
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.44 E-value=0.044 Score=56.68 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=8.9
Q ss_pred CCCCccEEEeecCCC
Q 010572 223 NSETLASLEFLHCKL 237 (507)
Q Consensus 223 ~~~~L~~LdLs~~~l 237 (507)
++.+|++++|.++.+
T Consensus 178 ~c~~L~~l~l~~n~l 192 (401)
T 4fdw_A 178 YCYNLKKADLSKTKI 192 (401)
T ss_dssp TCTTCCEEECTTSCC
T ss_pred CcccCCeeecCCCcc
Confidence 445666666665544
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.97 E-value=0.045 Score=56.56 Aligned_cols=86 Identities=9% Similarity=0.076 Sum_probs=48.7
Q ss_pred CCCcEEEeccCCCCchhHHHHH-HhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQ-DGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICS 451 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~-~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~ 451 (507)
..|+++++.+|.+.......+. .+.....+|+.++|.+ .+..-+.. ++..+++|+.|.|..| +..-|. .
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~----aF~~c~~L~~l~lp~~-l~~I~~----~ 340 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG----LLGGNRKVTQLTIPAN-VTQINF----S 340 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTT----TTTTCCSCCEEEECTT-CCEECT----T
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhh----hhcCCCCccEEEECcc-ccEEcH----H
Confidence 4677777777665421111111 1233455688888874 34443322 3445577888888665 432111 2
Q ss_pred HHhcCCCCccEEEecCCCC
Q 010572 452 ALKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 452 aL~~~~~~L~~LdL~~N~~ 470 (507)
|+. .|+|+.+++.+|..
T Consensus 341 aF~--~~~L~~l~l~~n~~ 357 (401)
T 4fdw_A 341 AFN--NTGIKEVKVEGTTP 357 (401)
T ss_dssp SSS--SSCCCEEEECCSSC
T ss_pred hCC--CCCCCEEEEcCCCC
Confidence 333 35899999999875
No 157
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=84.94 E-value=0.48 Score=38.96 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=31.0
Q ss_pred CChhhHHHHHhcCCchhhhhhhccCCccccCCC-CCCCcccccCcccccCCCccHHHHHHHhcccCcccCCCCCCcHHHH
Q 010572 32 LPADLFDILLTCLPPLALQKLQTKMPFRDGDDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSGFTDQIEPVDWQQR 110 (507)
Q Consensus 32 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~w~~~~~~~~~~~w~~~ 110 (507)
.|=+++.-|+++-+|.-|..++..-| .+ ++-| .-|++.|+-.-+.... .++.+|+++
T Consensus 13 ~Py~lL~PVLek~tp~QL~~IE~~nP-----~L~~dTd----------------eLWk~~c~rdF~~~~p-~e~esWRel 70 (97)
T 4hfx_A 13 VPYSVLEPVLERCTPDQLYRIEEYNH-----VLIEETD----------------QLWKVHCHRDFKEERP-EEYESWREM 70 (97)
T ss_dssp -------CCGGGCCHHHHHHHHTC-----------CCH----------------HHHHHHC----CCSCC-CSSSCHHHH
T ss_pred CcHHHHHHHHccCCHHHHHHHHHhCc-----ccchhhH----------------HHHHHHHHhHCcccCC-CCCCCHHHH
Confidence 45566777777888888888887777 45 2222 3599999998887433 337899999
Q ss_pred H
Q 010572 111 Y 111 (507)
Q Consensus 111 ~ 111 (507)
|
T Consensus 71 Y 71 (97)
T 4hfx_A 71 Y 71 (97)
T ss_dssp H
T ss_pred H
Confidence 9
No 158
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=84.01 E-value=0.6 Score=46.30 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=43.5
Q ss_pred CcccCCChhhHHHHHhcCCchhhh-hhhccCCcccc--CCC-CCCCcccccCcccccCCCccHHHHHHHhcccCc--ccC
Q 010572 27 PYVYELPADLFDILLTCLPPLALQ-KLQTKMPFRDG--DDC-GSPDYCFENGRKRGRYGNFNTVWKKLFKTRWSG--FTD 100 (507)
Q Consensus 27 p~~~~l~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~w~~--~~~ 100 (507)
+.+..||.|++..|+.+|||..|- .+. .-|. ..+ .|+ .-|++.|..+|-. ...
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~----~VCk~Wr~l~~~~-----------------~~w~~~~~~~g~~~~~~~ 107 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACR----LVCLRWKELVDGA-----------------PLWLLKCQQEGLVPEGSA 107 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGG----GTCHHHHHHHTSH-----------------HHHHHHHHHTTCCCC---
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHH----HHhHHHHHHhcCh-----------------HHHHHHhhccCccccccc
Confidence 457899999999999999998553 221 1110 001 122 3499999888543 222
Q ss_pred CCCCCcHHHHHHHHHHhh
Q 010572 101 QIEPVDWQQRYWEAHVQG 118 (507)
Q Consensus 101 ~~~~~~w~~~~~e~hl~~ 118 (507)
...+.+||++|..++..-
T Consensus 108 ~~~~~~Wk~~y~~~~~gR 125 (297)
T 2e31_A 108 DEERDHWQQFYFLSKRRR 125 (297)
T ss_dssp --CCSCHHHHHHHHHHCC
T ss_pred CCCCCChhhhheheeccc
Confidence 212578999997775443
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=78.79 E-value=0.99 Score=38.76 Aligned_cols=38 Identities=24% Similarity=0.135 Sum_probs=28.7
Q ss_pred CCCCEEEccCCCCCchHHHHHHHHhccCCCCccEEECcCCCCC
Q 010572 289 RSLCSLKLRHCHLDRDFGRMVFSSLLEASSSLSILDLSGNSIG 331 (507)
Q Consensus 289 ~sL~~L~LS~N~L~~~g~~~L~~~L~~~~~~L~~LdLS~N~L~ 331 (507)
++|++|+|++|+|..-... .+....+|++|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~-----~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPG-----LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTT-----TGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChh-----hhhhccccCEEEecCCCee
Confidence 3689999999998765432 2344578999999999886
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=75.92 E-value=0.95 Score=38.86 Aligned_cols=12 Identities=25% Similarity=0.194 Sum_probs=5.5
Q ss_pred CccEEEccCCCC
Q 010572 430 ELVEVNAGYNLM 441 (507)
Q Consensus 430 ~L~~L~Ls~N~l 441 (507)
+|+.|+|++|.+
T Consensus 56 ~L~~L~L~~NP~ 67 (130)
T 3rfe_A 56 ALRTAHLGANPW 67 (130)
T ss_dssp TCCEEECCSSCC
T ss_pred ccCEEEecCCCe
Confidence 344444444444
No 161
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=53.81 E-value=13 Score=37.19 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=47.5
Q ss_pred HHHHHHhccCCCCCCcccCCChhhHHHHHhcCCchhhhhhhccCCccccCCCCCCCcccccCcccccCCCccHHHHHHHh
Q 010572 13 LAVKRELLLGDDVIPYVYELPADLFDILLTCLPPLALQKLQTKMPFRDGDDCGSPDYCFENGRKRGRYGNFNTVWKKLFK 92 (507)
Q Consensus 13 ~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 92 (507)
+++...+.. .-..-.+..||.|++.+|+..|+|.-|-.+-. -| -.+ +.-+.+ +..|+++|+
T Consensus 4 ~~~~~~~~~-~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~----v~-~~~----------~~~~~~---~~~w~~~~~ 64 (445)
T 2ovr_B 4 KHMMQVIEP-QFQRDFISLLPKELALYVLSFLEPKDLLQAAQ----TC-RYW----------RILAED---NLLWREKCK 64 (445)
T ss_dssp HHHHHHHCC-CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTT----SC-HHH----------HHHHTC---SHHHHHHHT
T ss_pred HHHHHhcCc-cccCChhHHCCHHHHHHHHHhCCHHHHHHHHH----Hh-HHH----------HhhcCc---hhHhhhhee
Confidence 455555531 11223478999999999999999975543221 00 000 000011 235999997
Q ss_pred cccCcc-c--------CCCC-CCcHHHHHHHHHHh
Q 010572 93 TRWSGF-T--------DQIE-PVDWQQRYWEAHVQ 117 (507)
Q Consensus 93 ~~w~~~-~--------~~~~-~~~w~~~~~e~hl~ 117 (507)
.++... . ..+. ...|+..|.++|-.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~~~ 99 (445)
T 2ovr_B 65 EEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRI 99 (445)
T ss_dssp TTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHHHH
T ss_pred ecccccccccccceecCCCccCCcHHHHHhhhhhh
Confidence 665321 0 0111 35799999888754
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=48.70 E-value=25 Score=35.18 Aligned_cols=80 Identities=14% Similarity=0.057 Sum_probs=32.7
Q ss_pred CCCcEEEeccCCCCchhHHHHHHhhcCCCCCCEEeccCCCCChHHHHHHHhhCCCCCCccEEEccCCCCChhHHHHHHHH
Q 010572 373 TSVQVLNIGAIGLGSSGFRVLQDGVTKELKLVNINISKNRGGVETAKFLSKLMPLAPELVEVNAGYNLMPLESLTIICSA 452 (507)
Q Consensus 373 ~~L~~L~Ls~n~l~~~G~~~L~~aL~~n~~L~~LdLs~N~i~~~g~~~L~~~L~~n~~L~~L~Ls~N~l~~~g~~~L~~a 452 (507)
.+|++++|..+ ++..|- .+.....+|+.+.|..+ ++.-|. .+...+.+|+++++..|... ..+
T Consensus 311 ~~L~~i~lp~~-v~~I~~----~aF~~C~~L~~i~ip~s-v~~I~~----~aF~~C~~L~~i~~~~~~~~-------~~~ 373 (394)
T 4gt6_A 311 ISLKSIDIPEG-ITQILD----DAFAGCEQLERIAIPSS-VTKIPE----SAFSNCTALNNIEYSGSRSQ-------WNA 373 (394)
T ss_dssp TTCCEEECCTT-CCEECT----TTTTTCTTCCEEEECTT-CCBCCG----GGGTTCTTCCEEEESSCHHH-------HHT
T ss_pred CCcCEEEeCCc-ccEehH----hHhhCCCCCCEEEECcc-cCEEhH----hHhhCCCCCCEEEECCceee-------hhh
Confidence 34566666532 332221 12333456777777554 222221 23445567777777765321 123
Q ss_pred HhcCCCCccEEEecCCCC
Q 010572 453 LKVAKGHLQRLDLTGNNW 470 (507)
Q Consensus 453 L~~~~~~L~~LdL~~N~~ 470 (507)
... ...|+.+.+..|.+
T Consensus 374 ~~~-~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 374 IST-DSGLQNLPVAPGSI 390 (394)
T ss_dssp CBC-CCCC----------
T ss_pred hhc-cCCCCEEEeCCCCE
Confidence 332 24677777766654
No 163
>1lm8_V VHL, VON hippel-lindau disease tumor suppressor; regulation, tumor suppressor, oxygen sensing, transcription; 1.85A {Homo sapiens} SCOP: b.3.3.1 PDB: 1vcb_C 1lqb_C 3zrf_C 3zrc_C
Probab=43.46 E-value=18 Score=32.28 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=30.9
Q ss_pred CCCCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHHhcCC
Q 010572 2 VKAPSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLTCLP 45 (507)
Q Consensus 2 ~~~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~ 45 (507)
-|+.+|.+.|+++| +.+...++ -..-++|..++..|..+..
T Consensus 100 ~pv~tL~e~cl~~I-r~l~~~~~--~~~leipr~L~~el~~~~~ 140 (160)
T 1lm8_V 100 LPVYTLKERCLQVV-RSLVKPEN--YRRLDIVRSLYEDLEDHPN 140 (160)
T ss_dssp CCCCCHHHHHHHHH-HHHSCGGG--GGGSCSCHHHHHHHHSCCC
T ss_pred ccchhHHHHHHHHH-HHhcChhh--cccccccHHHHHHHHHChH
Confidence 47899999999999 66764333 2357899999988876543
No 164
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=35.97 E-value=51 Score=22.17 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=25.2
Q ss_pred CCcHHHHHHHHHHHHhccCCCCCCcccCCChhhHHHHHh
Q 010572 4 APSLISLAALAVKRELLLGDDVIPYVYELPADLFDILLT 42 (507)
Q Consensus 4 ~p~l~~~c~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~ 42 (507)
||||..||=.+|-+++. + .. .-..||+.+++.+.+
T Consensus 1 v~sLQHLCR~~I~~~~~-~--~~-~~LpLP~~Lk~yL~e 35 (40)
T 2jz3_A 1 VATLQHLCRKTVNGHLD-S--YE-KVTQLPGPIREFLDQ 35 (40)
T ss_pred CccHHHHHHHHHHHHcC-C--Cc-ccCCCCHHHHHHHHH
Confidence 69999999999999983 1 11 245677777777653
No 165
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=29.99 E-value=33 Score=23.79 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=19.2
Q ss_pred CcccCCChhhHHHHHhcCCchhhh
Q 010572 27 PYVYELPADLFDILLTCLPPLALQ 50 (507)
Q Consensus 27 p~~~~l~~~~~~~~~~~l~~~~~~ 50 (507)
+.+..||.|.+..|+.+||+.-+-
T Consensus 7 ~~~~~LP~eil~~I~~~L~~~dl~ 30 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCLCLPELL 30 (53)
T ss_dssp --CCSSCHHHHHHHHTTSCGGGHH
T ss_pred CCHHHCCHHHHHHHHHcCCHHHHH
Confidence 457999999999999999987443
No 166
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=29.87 E-value=19 Score=21.68 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=7.0
Q ss_pred ccCcccccCCC
Q 010572 72 ENGRKRGRYGN 82 (507)
Q Consensus 72 ~~~~~~~~~~~ 82 (507)
++.|||.|+|+
T Consensus 5 rrrrkrkrewd 15 (28)
T 3ukx_C 5 RRRRKRKREWD 15 (28)
T ss_dssp -CCCCCCCCCC
T ss_pred HHHHHhhcccc
Confidence 45677777765
Done!