Query 010574
Match_columns 507
No_of_seqs 237 out of 1712
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 02:07:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1882 Transcriptional regula 100.0 1.2E-47 2.6E-52 373.8 7.1 265 230-506 26-290 (293)
2 KOG1881 Anion exchanger adapto 99.8 3.8E-20 8.2E-25 201.4 5.7 130 370-504 138-268 (793)
3 PF00498 FHA: FHA domain; Int 99.8 1.3E-18 2.8E-23 136.4 8.2 68 412-492 1-68 (68)
4 KOG1880 Nuclear inhibitor of p 99.7 5.7E-17 1.2E-21 163.2 4.3 116 375-502 4-119 (337)
5 cd00060 FHA Forkhead associate 99.6 1.7E-14 3.7E-19 117.9 12.4 98 389-500 2-100 (102)
6 PLN02927 antheraxanthin epoxid 99.6 1E-14 2.3E-19 160.6 10.8 94 387-494 532-637 (668)
7 COG1716 FOG: FHA domain [Signa 99.4 2.8E-13 6E-18 124.0 9.1 79 408-502 87-166 (191)
8 TIGR03354 VI_FHA type VI secre 99.4 3.7E-13 7.9E-18 140.6 10.9 83 403-501 18-104 (396)
9 smart00240 FHA Forkhead associ 99.2 1E-11 2.2E-16 92.3 5.0 52 412-475 1-52 (52)
10 COG3456 Predicted component of 98.9 3.5E-09 7.5E-14 111.5 7.0 77 410-501 26-105 (430)
11 KOG0615 Serine/threonine prote 98.1 4.9E-06 1.1E-10 88.5 7.0 94 404-501 59-156 (475)
12 TIGR02500 type_III_yscD type I 97.3 0.00064 1.4E-08 71.8 8.4 90 389-496 1-91 (410)
13 KOG0245 Kinesin-like protein [ 96.3 0.011 2.3E-07 69.0 8.4 85 404-503 471-557 (1221)
14 KOG1892 Actin filament-binding 95.6 0.033 7E-07 65.0 7.8 95 389-501 358-454 (1629)
15 KOG2293 Daxx-interacting prote 95.0 0.045 9.7E-07 60.3 6.3 83 407-502 445-533 (547)
16 TIGR01663 PNK-3'Pase polynucle 94.2 0.14 3.1E-06 56.5 7.9 85 403-503 26-110 (526)
17 KOG0241 Kinesin-like protein [ 93.0 0.18 3.8E-06 59.2 6.2 83 403-504 462-544 (1714)
18 KOG1881 Anion exchanger adapto 57.8 4.2 9E-05 47.0 0.7 76 411-498 61-136 (793)
19 cd00165 S4 S4/Hsp/ tRNA synthe 57.5 12 0.00025 27.8 2.9 30 465-495 25-54 (70)
20 COG1188 Ribosome-associated he 54.3 13 0.00028 33.4 3.1 30 468-499 36-65 (100)
21 PRK11507 ribosome-associated p 52.9 17 0.00037 30.8 3.4 37 454-495 29-65 (70)
22 smart00363 S4 S4 RNA-binding d 52.0 17 0.00037 26.1 3.0 28 465-493 25-52 (60)
23 PF13275 S4_2: S4 domain; PDB: 51.8 10 0.00022 31.5 1.8 30 466-496 33-62 (65)
24 TIGR02988 YaaA_near_RecF S4 do 51.0 14 0.0003 28.9 2.4 25 466-491 34-58 (59)
25 PF01479 S4: S4 domain; Inter 47.0 15 0.00032 27.2 1.9 23 466-489 26-48 (48)
26 COG2501 S4-like RNA binding pr 45.2 27 0.00058 29.9 3.4 38 453-495 28-65 (73)
27 KOG2888 Putative RNA binding p 45.0 47 0.001 35.9 5.9 12 72-83 218-229 (453)
28 PF02626 AHS2: Allophanate hyd 43.3 23 0.00049 36.4 3.3 37 464-500 53-92 (271)
29 PRK01777 hypothetical protein; 40.5 22 0.00048 31.3 2.3 29 460-491 45-73 (95)
30 TIGR01687 moaD_arch MoaD famil 39.7 24 0.00051 29.3 2.3 24 468-491 58-81 (88)
31 smart00797 AHS2 Allophanate hy 39.6 75 0.0016 32.9 6.3 36 465-500 54-92 (280)
32 PF14478 DUF4430: Domain of un 38.7 22 0.00047 28.7 1.9 22 470-491 45-67 (68)
33 TIGR01642 U2AF_lg U2 snRNP aux 38.5 97 0.0021 33.1 7.2 10 465-474 357-366 (509)
34 PF11012 DUF2850: Protein of u 37.1 46 0.00099 28.8 3.6 38 464-504 22-61 (79)
35 cd01764 Urm1 Urm1-like ubuitin 37.0 24 0.00051 30.7 1.9 24 469-492 63-88 (94)
36 TIGR00724 urea_amlyse_rel biot 36.8 82 0.0018 33.2 6.2 40 461-500 72-115 (314)
37 PRK10348 ribosome-associated h 36.2 40 0.00087 31.6 3.4 34 466-501 34-67 (133)
38 cd00754 MoaD Ubiquitin domain 35.9 29 0.00063 27.8 2.2 23 467-491 51-73 (80)
39 COG1984 DUR1 Allophanate hydro 30.2 1.5E+02 0.0033 31.6 6.9 39 462-500 72-113 (314)
40 PF14640 TMEM223: Transmembran 29.8 1.1E+02 0.0024 29.7 5.3 63 390-474 92-160 (170)
41 KOG4676 Splicing factor, argin 29.3 20 0.00044 39.2 0.4 19 166-184 220-238 (479)
42 cd04089 eRF3_II eRF3_II: domai 27.1 61 0.0013 26.8 2.8 26 466-495 13-38 (82)
43 KOG3263 Nucleic acid binding p 26.6 25 0.00054 34.7 0.4 13 1-15 1-13 (196)
44 PF02824 TGS: TGS domain; Int 25.8 40 0.00088 26.7 1.4 22 468-491 37-58 (60)
45 PF12538 FtsK_SpoIIIE_N: DNA t 25.7 1.6E+02 0.0034 26.2 5.3 43 391-441 2-46 (113)
46 PF09269 DUF1967: Domain of un 25.5 52 0.0011 27.1 2.1 16 483-498 54-69 (69)
47 KOG4368 Predicted RNA binding 25.1 1.2E+02 0.0026 35.0 5.4 17 105-122 667-683 (757)
48 PRK06437 hypothetical protein; 24.1 72 0.0016 25.9 2.6 22 468-491 39-60 (67)
49 cd01666 TGS_DRG_C TGS_DRG_C: 23.6 73 0.0016 26.8 2.6 20 470-491 54-73 (75)
50 TIGR03595 Obg_CgtA_exten Obg f 23.2 58 0.0012 26.9 1.9 16 483-498 54-69 (69)
51 TIGR01683 thiS thiamine biosyn 22.5 62 0.0013 25.6 1.9 22 470-491 34-57 (64)
52 KOG4676 Splicing factor, argin 21.9 1.4E+02 0.003 33.1 4.9 12 114-125 374-385 (479)
53 PF02597 ThiS: ThiS family; I 21.9 49 0.0011 26.2 1.2 24 468-491 46-70 (77)
54 TIGR02712 urea_carbox urea car 21.5 2E+02 0.0043 35.6 6.6 40 462-501 522-565 (1201)
55 KOG0835 Cyclin L [General func 20.9 99 0.0021 33.4 3.5 9 290-298 357-365 (367)
56 cd00565 ThiS ThiaminS ubiquiti 20.8 78 0.0017 25.1 2.1 24 468-491 33-58 (65)
57 COG5131 URM1 Ubiquitin-like pr 20.7 97 0.0021 27.8 2.9 24 469-492 65-90 (96)
58 PF14451 Ub-Mut7C: Mut7-C ubiq 20.1 87 0.0019 26.8 2.4 24 468-493 52-75 (81)
No 1
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-47 Score=373.79 Aligned_cols=265 Identities=51% Similarity=0.783 Sum_probs=201.2
Q ss_pred hhhccccCcCCcchhhhhhhhccccchhhhhhhhcCCCCcccccccccccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 010574 230 RERENDHSRASDKDIHRERVSERETGSERKERRERDFEGDREGRKLGRNEASNQSSRSRRDRSTSPLDRPPRSRHRSPQS 309 (507)
Q Consensus 230 r~r~~~~~~~~~~d~~r~~~~~r~~~~~r~~rr~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~p~~~~~r~~~~~~~~ 309 (507)
++|++-.|..-|++..+++ ..+..|..|.+.|.++.++++++.-+.+. .+..++...|..++. +.+|...+.+.+
T Consensus 26 ~er~~k~~~~r~~~~~~~r---~~k~rq~~e~~~R~~r~d~e~r~~~~~~~-~R~~r~~~~r~rg~s-r~rR~~~rrp~~ 100 (293)
T KOG1882|consen 26 RERKNKASGRRDKSPRRKR---TVKVRQESEDRPRRGREDREHRRPSRQMF-RRRKRSDNTRHRGHS-RQRRTSKRRPSQ 100 (293)
T ss_pred hhhhhccccccccCccccc---chhhhhhccccccccchhcccccchhhhh-hhhhcCccccccCcc-ccccccccCccc
Confidence 3444444444455555554 22344445555556666666544444332 233444444444443 222222222222
Q ss_pred CccccccccccCCCCCcCCCCCCcchHHHhhHHHHHHhhhhccCCCccccccccccccccCCceecccCCCCCCCCCCce
Q 010574 310 ADGSWARHEVMNSGGAEYSRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRW 389 (507)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~dDSi~~~~~~eea~ee~~KekPnFe~SG~La~dtNtv~GVtLkysePpeAr~P~~~w 389 (507)
..+.. ....|++..++.-|. +. .+..++++.+++.+++|+|+++|+|+.++|++.||+|+|++|++|.+|...|
T Consensus 101 ~~~~~--~d~~~~r~~e~~~nn--~~--k~~~~~k~~~~~dke~p~f~lsg~l~E~tn~~~gv~v~y~eppearkP~kRw 174 (293)
T KOG1882|consen 101 YIDIG--RDFSNARLRELESNN--GG--KEGIALKEVEPQDKEKPSFELSGALLEDTNRFRGVVVKYNEPPEARKPKKRW 174 (293)
T ss_pred hhccc--ccccchhhhhhcccc--cC--CccccccccCchhccCCchhhchhhhhhhcceeeEEEEecCCchhcCchhhe
Confidence 22111 124566665555444 22 4455667777889999999999999999999999999999999999999999
Q ss_pred EEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccc
Q 010574 390 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTY 469 (507)
Q Consensus 390 rL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTF 469 (507)
.||+|++++.+ .+++|+.++||||||+..++||.|+||+||+|||||||+.+.++-++|++...+++|||||||+||||
T Consensus 175 rLy~fk~~e~l-~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTf 253 (293)
T KOG1882|consen 175 RLYPFKCYEVL-PVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTF 253 (293)
T ss_pred ecccccCCccc-chheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcce
Confidence 99999999887 68999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCeecCCCCeeecCCCCEEEEcCceEEEEEecCCCC
Q 010574 470 LNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHENSN 506 (507)
Q Consensus 470 VNGeRI~~~ryveL~dGDvIkFG~STreYVLl~e~s~ 506 (507)
||..+|+++.||+|..+|+|+||+++++|||+++++.
T Consensus 254 LNnk~IepqRYyEL~ekDvlkfgfs~rEyvllhe~s~ 290 (293)
T KOG1882|consen 254 LNNKVIEPQRYYELREKDVLKFGFSSREYVLLHEISM 290 (293)
T ss_pred ecCcccCchheeeeecCceeeeccchHHHHHHHhhhc
Confidence 9999999999999999999999999999999999853
No 2
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=99.79 E-value=3.8e-20 Score=201.40 Aligned_cols=130 Identities=31% Similarity=0.497 Sum_probs=113.7
Q ss_pred CCceecccCCCCCCCCCCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCC
Q 010574 370 RGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDG 449 (507)
Q Consensus 370 ~GVtLkysePpeAr~P~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dG 449 (507)
....+.|..|+|+.+|...|.|.+++.|.++ +++.|....+|+|||. ..||+++.||+||+.||+|||..... ++
T Consensus 138 pa~~~py~vppw~~P~~~~~~lEvlKeg~ii-et~~l~~~~~~~fgr~-~~cD~~~eHpsISr~h~vlQy~~~~~---~~ 212 (793)
T KOG1881|consen 138 PAAAAPYEVPPWSGPPAAIFQLEVLKEGAII-ETEDLKGAAACLFGRL-GGCDVALEHPSISRFHAVLQYKASGP---DD 212 (793)
T ss_pred cCCCCcccCCCCCCCcccchhhhhhccCcee-eeeecccceeEEeccc-CCCccccccCcccccceeeeccCCCC---Cc
Confidence 3456789999999999999999999999988 5788988899999999 69999999999999999999976432 11
Q ss_pred C-CCCcceeEEEeCCCCCccccCCeecCCCCeeecCCCCEEEEcCceEEEEEecCC
Q 010574 450 M-LSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHEN 504 (507)
Q Consensus 450 d-~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~e~ 504 (507)
. ......|||.|||||+|||||..+|++..|+.+..|++|.||.+||.|+|....
T Consensus 213 p~~s~~~g~~i~dlgsThgt~~NK~rvppk~yir~~Vg~v~~fggsTrl~i~Qgp~ 268 (793)
T KOG1881|consen 213 PCASNGEGWYIYDLGSTHGTFLNKDRVPPKVYIRDRVGHVARFGGSTRLYIFQGPE 268 (793)
T ss_pred cccCCCCceEEeeccccccceeccccCCCcchhhhhHHHHHHhcCceEEEEeeCCC
Confidence 1 123466999999999999999999999999999999999999999999998643
No 3
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.77 E-value=1.3e-18 Score=136.40 Aligned_cols=68 Identities=40% Similarity=0.557 Sum_probs=61.8
Q ss_pred eeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCeeecCCCCEEEE
Q 010574 412 YLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 412 ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkF 491 (507)
|+|||+ ..|||+|+++.||++||.|.+... ..|||.||+|+|||||||++|.+..++.|.+||+|+|
T Consensus 1 ~~iGR~-~~~di~l~~~~iSr~Ha~i~~~~~------------~~~~i~d~~s~ngt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 1 VTIGRS-PDCDIVLPDPSISRRHARISFDDD------------GQFYIEDLGSTNGTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp EEEESS-TTSSEEETSTTSSTTSEEEEEETT------------EEEEEEESSSSS-EEETTEEESSTSEEEE-TTEEEEE
T ss_pred CEEcCC-CCCCEEECCHheeeeeeEEEEece------------eeEEEEeCCCCCcEEECCEEcCCCCEEECCCCCEEEc
Confidence 689999 799999999999999999999752 3799999999999999999999999999999999999
Q ss_pred c
Q 010574 492 G 492 (507)
Q Consensus 492 G 492 (507)
|
T Consensus 68 G 68 (68)
T PF00498_consen 68 G 68 (68)
T ss_dssp T
T ss_pred C
Confidence 8
No 4
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=99.65 E-value=5.7e-17 Score=163.20 Aligned_cols=116 Identities=35% Similarity=0.613 Sum_probs=103.5
Q ss_pred cccCCCCCCCCCCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCc
Q 010574 375 LFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKE 454 (507)
Q Consensus 375 kysePpeAr~P~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~ 454 (507)
+|.+|.||.+|+...+|.|.++...+ ..+.|..+.+|+|||+...||++|+|.+||++||.+.|....
T Consensus 4 ~~~~p~wA~kpp~g~hldv~k~d~li-~kl~iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl----------- 71 (337)
T KOG1880|consen 4 NFDPPSWAGKPPAGLHLDVVKGDKLI-QKLIIDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKHL----------- 71 (337)
T ss_pred cCCCCCcccCCCCCCceeeeecchhH-HHHHhhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhcc-----------
Confidence 58899999999999999998875544 345566778999999999999999999999999999997642
Q ss_pred ceeEEEeCCCCCccccCCeecCCCCeeecCCCCEEEEcCceEEEEEec
Q 010574 455 VRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLH 502 (507)
Q Consensus 455 ~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~ 502 (507)
..+||+||+|++||||...+|.+..+++|..|..+.||.+|+.|.|..
T Consensus 72 ~~~~lidl~s~hgtf~g~~rL~~~~p~~l~i~~~~~fgasTr~y~lr~ 119 (337)
T KOG1880|consen 72 SRIFLIDLGSTHGTFLGNERLEPHKPVQLEIGSTFHFGASTRIYLLRE 119 (337)
T ss_pred ceEEEEEccCCcceeeeeeeeccCCCccccCCceEEEeccceeeeeec
Confidence 469999999999999999999999999999999999999999998854
No 5
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.59 E-value=1.7e-14 Score=117.93 Aligned_cols=98 Identities=33% Similarity=0.512 Sum_probs=79.6
Q ss_pred eEEEEEeCCeeecceEEecccceeeecccCccC-ceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCc
Q 010574 389 WRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVA-DIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNK 467 (507)
Q Consensus 389 wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~c-DIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNG 467 (507)
|.|.++.++. ....+.|.....++|||+ ..| +|.|.++.||++||+|.+... ..+|++|+.|+||
T Consensus 2 ~~L~~~~~~~-~~~~~~l~~~~~~~iGr~-~~~~~i~l~~~~iS~~H~~i~~~~~------------~~~~~~~~~s~~g 67 (102)
T cd00060 2 PRLVVLSGDA-SGRRYYLDPGGTYTIGRD-SDNCDIVLDDPSVSRRHAVIRYDGD------------GGVVLIDLGSTNG 67 (102)
T ss_pred eEEEEecCCC-ceeEEEECCCCeEEECcC-CCcCCEEcCCCCeeCcceEEEEcCC------------CCEEEEECCCCCC
Confidence 6777776642 223566755478999998 577 999999999999999998741 3589999999999
Q ss_pred cccCCeecCCCCeeecCCCCEEEEcCceEEEEE
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKFGNSSREYVL 500 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkFG~STreYVL 500 (507)
||||+..|.....+.|.+||.|.||.....|.|
T Consensus 68 ~~vn~~~~~~~~~~~l~~gd~i~ig~~~~~~~~ 100 (102)
T cd00060 68 TFVNGQRVSPGEPVRLRDGDVIRLGNTSISFRF 100 (102)
T ss_pred eEECCEECCCCCcEECCCCCEEEECCeEEEEEE
Confidence 999999999877899999999999974444443
No 6
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.56 E-value=1e-14 Score=160.65 Aligned_cols=94 Identities=26% Similarity=0.378 Sum_probs=78.7
Q ss_pred CceEEEEEeCCeeecceEEe--cccceeeecccCccCce-----ecCCCCcCccceEEEEecccccCCCCCCCCcceeEE
Q 010574 387 VRWRLYVFKAGEMLKEPLYI--HRQSCYLFGRERRVADI-----PTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYI 459 (507)
Q Consensus 387 ~~wrL~VfKgGe~l~e~i~L--~~qs~ylIGRdr~~cDI-----vLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yL 459 (507)
..|+|++.-++....++|.| +.+..++||+. ..||+ +|.++.||++||.|.+.. +.|||
T Consensus 532 ~~w~l~~~~~~~~~~~~~~l~~~~~~p~~iG~~-~~~~~~~~~i~i~~~~vS~~Ha~i~~~~-------------~~~~~ 597 (668)
T PLN02927 532 GEWYLIPHGDDCCVSETLCLTKDEDQPCIVGSE-PDQDFPGMRIVIPSSQVSKMHARVIYKD-------------GAFFL 597 (668)
T ss_pred CCeEEEecCCCCcccceeeeecCCCCCeEecCC-CCcCCCCceEEecCCccChhHeEEEEEC-------------CEEEE
Confidence 46999997655433356777 35567999998 68995 999999999999999874 56999
Q ss_pred EeCCCCCccccCCee-----cCCCCeeecCCCCEEEEcCc
Q 010574 460 MDLGSTNKTYLNDNP-----IEPQRYYELFEKDTIKFGNS 494 (507)
Q Consensus 460 iDLgSTNGTFVNGeR-----I~~~ryveL~dGDvIkFG~S 494 (507)
+||+|||||||||+. +.++.++.|.+||+|.||..
T Consensus 598 ~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~I~~g~~ 637 (668)
T PLN02927 598 MDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIEFGSD 637 (668)
T ss_pred EECCCCCccEEeCCCCceEecCCCCceEeCCCCEEEeCCC
Confidence 999999999998887 56778899999999999995
No 7
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.45 E-value=2.8e-13 Score=124.03 Aligned_cols=79 Identities=27% Similarity=0.400 Sum_probs=68.9
Q ss_pred ccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCeeecCCCC
Q 010574 408 RQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKD 487 (507)
Q Consensus 408 ~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGD 487 (507)
....|.|||+ ..|+|+|++..||+.||.|.+.. ..+||+||+|+|||||||.+|.. .+.|.+||
T Consensus 87 ~~~~~tigr~-~~~~i~~~~~~vSR~Ha~l~~~~-------------~~~~~~d~~S~nGt~vn~~~v~~--~~~l~~gd 150 (191)
T COG1716 87 GEPVTTIGRD-PDNDIVLDDDVVSRRHAELRREG-------------NEVFLEDLGSTNGTYVNGEKVRQ--RVLLQDGD 150 (191)
T ss_pred ccceEEeccC-CCCCEEcCCCccccceEEEEEeC-------------CceEEEECCCCcceEECCeEccC--cEEcCCCC
Confidence 4457999997 79999999999999999999875 45899999999999999999995 46899999
Q ss_pred EEEEcCceE-EEEEec
Q 010574 488 TIKFGNSSR-EYVLLH 502 (507)
Q Consensus 488 vIkFG~STr-eYVLl~ 502 (507)
+|.||.... .|.++.
T Consensus 151 ~i~i~~~~~~~~~~~~ 166 (191)
T COG1716 151 VIRLGGTLAERLRIIL 166 (191)
T ss_pred EEEECccceeeEeecc
Confidence 999999887 554443
No 8
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.44 E-value=3.7e-13 Score=140.60 Aligned_cols=83 Identities=25% Similarity=0.310 Sum_probs=72.5
Q ss_pred eEEecccceeeecccCccCceecCCCC--cCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccC--CeecCCC
Q 010574 403 PLYIHRQSCYLFGRERRVADIPTDHPS--CSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLN--DNPIEPQ 478 (507)
Q Consensus 403 ~i~L~~qs~ylIGRdr~~cDIvLdhPS--VSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVN--GeRI~~~ 478 (507)
.+.|. ...++|||+ ..|||+|+++. ||+.||.|.+.. +.|||+|+ |+|||||| |.+|..+
T Consensus 18 ~~~f~-~~~~~IGR~-~~~d~~l~d~~~~VS~~Ha~I~~~~-------------g~~~l~Dl-StNGT~VN~sg~~l~~~ 81 (396)
T TIGR03354 18 QKTFG-TNGGTIGRS-EDCDWVLPDPERHVSGRHARIRYRD-------------GAYLLTDL-STNGVFLNGSGSPLGRG 81 (396)
T ss_pred EEEEC-CCCEEEecC-CCCCEEeCCCCCCcchhhcEEEEEC-------------CEEEEEEC-CCCCeEECCCCCCCCCC
Confidence 45553 356999999 68999999998 999999999863 46999999 99999999 8999988
Q ss_pred CeeecCCCCEEEEcCceEEEEEe
Q 010574 479 RYYELFEKDTIKFGNSSREYVLL 501 (507)
Q Consensus 479 ryveL~dGDvIkFG~STreYVLl 501 (507)
.++.|.+||+|+||.....|.+.
T Consensus 82 ~~~~L~~GD~I~iG~~~lrv~~~ 104 (396)
T TIGR03354 82 NPVRLEQGDRLRLGDYEIRVSLG 104 (396)
T ss_pred CceEcCCCCEEEECCEEEEEEeC
Confidence 88999999999999988777774
No 9
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.24 E-value=1e-11 Score=92.27 Aligned_cols=52 Identities=40% Similarity=0.566 Sum_probs=45.4
Q ss_pred eeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeec
Q 010574 412 YLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPI 475 (507)
Q Consensus 412 ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI 475 (507)
++|||....|+|+|+++.||+.||.|.+... ..|+|.|++|+|||||||++|
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~------------~~~~i~d~~s~~gt~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGG------------GRFYLIDLGSTNGTFVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCC------------CeEEEEECCCCCCeeECCEEC
Confidence 5799983389999999999999999998641 259999999999999999976
No 10
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.86 E-value=3.5e-09 Score=111.50 Aligned_cols=77 Identities=25% Similarity=0.234 Sum_probs=66.9
Q ss_pred ceeeecccCccCceecCCC--CcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCe-eecCCC
Q 010574 410 SCYLFGRERRVADIPTDHP--SCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRY-YELFEK 486 (507)
Q Consensus 410 s~ylIGRdr~~cDIvLdhP--SVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ry-veL~dG 486 (507)
...+|||+ ..||..|+++ .||++||.|.++. +.|||.|. |.|||||||-.+..+.. ..|..|
T Consensus 26 ~~g~IGrs-~dcdW~i~D~~~~VS~~Hc~I~~~d-------------g~f~L~Dt-S~g~l~VNgs~~~~g~~~~RLqqG 90 (430)
T COG3456 26 GGGVIGRS-PDCDWQIDDPERFVSKQHCTISYRD-------------GGFCLTDT-SNGGLLVNGSDLPLGEGSARLQQG 90 (430)
T ss_pred CCcccccC-CCCCccccCcccccchhheEEEecC-------------CeEEEEec-CCCceeecccccCCCCCccccccC
Confidence 34899998 6999999866 6999999999975 56999999 89999999999988777 899999
Q ss_pred CEEEEcCceEEEEEe
Q 010574 487 DTIKFGNSSREYVLL 501 (507)
Q Consensus 487 DvIkFG~STreYVLl 501 (507)
|+|.||...+...|.
T Consensus 91 d~i~iG~y~i~V~l~ 105 (430)
T COG3456 91 DEILIGRYIIRVHLS 105 (430)
T ss_pred CEEeeccEEEEEEec
Confidence 999999977655553
No 11
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=4.9e-06 Score=88.50 Aligned_cols=94 Identities=24% Similarity=0.272 Sum_probs=72.1
Q ss_pred EEecccceeeecccCccCceecCCCCcCccceEEEEeccc-cc--CCCCCCCCcceeEEEeCCCCCccccCCeecCCCCe
Q 010574 404 LYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVE-KE--QPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRY 480 (507)
Q Consensus 404 i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~-~~--~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ry 480 (507)
+.+.. ..|+|||+ ..||+++....+|..|-.|.+.... +. ..+++ .....+||.|. |+||||||.+.|..+.-
T Consensus 59 ~d~~n-d~f~fGR~-~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~-~~sn~~y~~Dh-S~nGT~VN~e~i~k~~~ 134 (475)
T KOG0615|consen 59 IDLAN-DEFTFGRG-DSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRD-KNSNRVYLHDH-SRNGTFVNDEMIGKGLS 134 (475)
T ss_pred ceecc-ceEEecCC-CcccccccCccccccchheeeeeeeeeeeecccCC-CccceEEEEec-ccCcccccHhHhhcccc
Confidence 44433 56999999 6999999999899999988664211 00 12222 34577999998 99999999999999989
Q ss_pred eecCCCCEEEEcCceE-EEEEe
Q 010574 481 YELFEKDTIKFGNSSR-EYVLL 501 (507)
Q Consensus 481 veL~dGDvIkFG~STr-eYVLl 501 (507)
..|++||.|.||.+.. .|++.
T Consensus 135 r~lkN~dei~is~p~~~~~v~~ 156 (475)
T KOG0615|consen 135 RILKNGDEISISIPALKIFVFE 156 (475)
T ss_pred ccccCCCEEEeccchhheeeee
Confidence 9999999999998754 45544
No 12
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=97.33 E-value=0.00064 Score=71.75 Aligned_cols=90 Identities=11% Similarity=0.128 Sum_probs=64.3
Q ss_pred eEEEEEeCCeeecceEEecccceeeec-ccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCc
Q 010574 389 WRLYVFKAGEMLKEPLYIHRQSCYLFG-RERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNK 467 (507)
Q Consensus 389 wrL~VfKgGe~l~e~i~L~~qs~ylIG-Rdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNG 467 (507)
|.|.|+.|.... ..+.|... .|+|| ++ ..|||+|.++.||+.||.|.+.. ..+.|.+ +..+
T Consensus 1 ~~lrvl~G~~~G-~~~~L~~g-~~~iG~~~-~~~di~L~d~~~~~~h~~l~v~~-------------~~~~l~~--~~~~ 62 (410)
T TIGR02500 1 WKLRVLSGPHRG-AELPLPEG-NLVLGTDA-ADCDIVLSDGGIAAVHVSLHVRL-------------EGVTLAG--AVEP 62 (410)
T ss_pred CEEEEecCCCCC-cEEECCCC-ceEeccCC-CCcEEEeCCCCccchheEEEEcC-------------ceEEEec--CCcc
Confidence 678888765443 46777654 49999 77 79999999999999999999864 2355654 5677
Q ss_pred cccCCeecCCCCeeecCCCCEEEEcCceE
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKFGNSSR 496 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkFG~STr 496 (507)
+++||..+....-..|..+-.|.+|...+
T Consensus 63 ~~~~g~~~~~~~g~~l~~~~~l~~g~~~~ 91 (410)
T TIGR02500 63 AWEEGGVLPDEEGTPLPSGTPLLVAGVAF 91 (410)
T ss_pred eeECCcccccCCCCccCCCCceecceeEE
Confidence 88999333322334577777777776663
No 13
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.34 E-value=0.011 Score=69.04 Aligned_cols=85 Identities=22% Similarity=0.278 Sum_probs=60.5
Q ss_pred EEecccceeeecccC--ccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCee
Q 010574 404 LYIHRQSCYLFGRER--RVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYY 481 (507)
Q Consensus 404 i~L~~qs~ylIGRdr--~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryv 481 (507)
||+.......||+.. ...||+|.-+.|--+||.|.-.. | +.++++-.-----|||||+.|. .+.
T Consensus 471 lY~ikeG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~~-------g-----~~~vtl~p~e~aetyVNGk~v~--ep~ 536 (1221)
T KOG0245|consen 471 LYYIKEGETRVGREDASSRQDIVLSGQLIREQHCSIRNEG-------G-----NDVVTLEPCEDAETYVNGKLVT--EPT 536 (1221)
T ss_pred EEEeccCceecCCCCcccCCceEecchhhhhhceEEEecC-------C-----CceEEeccCCccceeEccEEcC--Ccc
Confidence 333344568889753 34799999999999999997432 1 2344443324455999999998 456
Q ss_pred ecCCCCEEEEcCceEEEEEecC
Q 010574 482 ELFEKDTIKFGNSSREYVLLHE 503 (507)
Q Consensus 482 eL~dGDvIkFG~STreYVLl~e 503 (507)
.|+.||.|.||.+- .|.+.+.
T Consensus 537 qL~~GdRiilG~~H-~frfn~P 557 (1221)
T KOG0245|consen 537 QLRSGDRIILGGNH-VFRFNHP 557 (1221)
T ss_pred eeccCCEEEEcCce-eEEecCH
Confidence 89999999999953 5666654
No 14
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=95.59 E-value=0.033 Score=64.96 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=66.1
Q ss_pred eEEEEEeCCeeecceEEecccceeeecccCcc--CceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCC
Q 010574 389 WRLYVFKAGEMLKEPLYIHRQSCYLFGRERRV--ADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTN 466 (507)
Q Consensus 389 wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~--cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTN 466 (507)
+.+++..+|......|.|+. +.+-||-+. . +.|.|.-|.|--.||.|.+-. +.+.|.-+---.
T Consensus 358 vLve~s~dG~~s~~ri~L~~-~vtEVGs~~-~~~~~iqLfGP~IqprHc~it~me-------------GVvTvTP~~~DA 422 (1629)
T KOG1892|consen 358 VLVELSPDGSDSRKRIRLQL-SVTEVGSEK-LDDNSIQLFGPGIQPRHCDITNME-------------GVVTVTPRSMDA 422 (1629)
T ss_pred EEEEEcCCCCCcceeEEecc-Cceeccccc-cCCcceeeeCCCCCccccchhhcc-------------ceEEecccccch
Confidence 33444445554434566654 568899873 4 368889999999999998642 446666663334
Q ss_pred ccccCCeecCCCCeeecCCCCEEEEcCceEEEEEe
Q 010574 467 KTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLL 501 (507)
Q Consensus 467 GTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl 501 (507)
-|||||.+|-. ...|++|+.|.||.+- .|.|+
T Consensus 423 ~t~VnGh~isq--ttiL~~G~~v~fGa~h-sfkF~ 454 (1629)
T KOG1892|consen 423 ETYVNGHRISQ--TTILQSGMKVQFGASH-SFKFV 454 (1629)
T ss_pred hhhccceecch--hhhhccCCEEEeccce-eEEec
Confidence 59999999984 4589999999999863 24443
No 15
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=95.00 E-value=0.045 Score=60.26 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=67.8
Q ss_pred cccceeeecccCccCceecC------CCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCe
Q 010574 407 HRQSCYLFGRERRVADIPTD------HPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRY 480 (507)
Q Consensus 407 ~~qs~ylIGRdr~~cDIvLd------hPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ry 480 (507)
..+..++|||....|-|-|| ...||+..|+|...+ + +.|+|..| -..-.||||..|..+..
T Consensus 445 mrk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n------~------GsF~IkNl-GK~~I~vng~~l~~gq~ 511 (547)
T KOG2293|consen 445 MRKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKN------D------GSFFIKNL-GKRSILVNGGELDRGQK 511 (547)
T ss_pred hcCcceEeeccCCCcceeeeccccCccceeeccceeEEecc------C------CcEEeccC-cceeEEeCCccccCCce
Confidence 36678999998666544443 446999999998864 2 45999999 57789999999999999
Q ss_pred eecCCCCEEEEcCceEEEEEec
Q 010574 481 YELFEKDTIKFGNSSREYVLLH 502 (507)
Q Consensus 481 veL~dGDvIkFG~STreYVLl~ 502 (507)
+.|.+.-+|.|-.-+|+|.+..
T Consensus 512 ~~L~~nclveIrg~~FiF~~N~ 533 (547)
T KOG2293|consen 512 VILKNNCLVEIRGLRFIFEINQ 533 (547)
T ss_pred EEeccCcEEEEccceEEEeecH
Confidence 9999999999999998887643
No 16
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.18 E-value=0.14 Score=56.48 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=67.1
Q ss_pred eEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCeee
Q 010574 403 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYE 482 (507)
Q Consensus 403 ~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryve 482 (507)
.|.|..+ ..+|||.+ . -.|.+..||++...|+.+.. ...+.|.=| -.|-|-|||..|.++..+.
T Consensus 26 ~~~~~~~-~~~~gr~p-e--t~i~d~~cs~~qv~l~a~~~-----------~~~v~~k~l-g~np~~~~~~~~~~~~~~~ 89 (526)
T TIGR01663 26 FIHLDAG-ALFLGRGP-E--TGIRDRKCSKRQIELQADLE-----------KATVALKQL-GVNPCGTGGLELKPGGEGE 89 (526)
T ss_pred eeccCCC-ceEEccCc-c--cccchhhhchhhheeeeccc-----------CceEEEEEc-cCCCcccCceEecCCCeee
Confidence 5777654 46789984 3 45569999999999987642 245667778 4599999999999999999
Q ss_pred cCCCCEEEEcCceEEEEEecC
Q 010574 483 LFEKDTIKFGNSSREYVLLHE 503 (507)
Q Consensus 483 L~dGDvIkFG~STreYVLl~e 503 (507)
|.+||+|.|=+...-|.|.++
T Consensus 90 l~~g~~l~~v~~~~~~~~~f~ 110 (526)
T TIGR01663 90 LGHGDLLEIVNGLHPLTLQFE 110 (526)
T ss_pred ecCCCEEEEeccccceeEEee
Confidence 999999999887776766664
No 17
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.00 E-value=0.18 Score=59.23 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=64.0
Q ss_pred eEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCeee
Q 010574 403 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYE 482 (507)
Q Consensus 403 ~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryve 482 (507)
.|||. ...+||-. ..-||++-.-.|=.+||+|.+.. + +.+++.-+-.+ -+||||..|.. ...
T Consensus 462 vyyl~--~~tlig~~-~~~~i~l~glgi~p~h~vidI~~------d------g~l~~~p~~~~-R~~VNGs~v~~--~t~ 523 (1714)
T KOG0241|consen 462 VYYLK--DHTLIGLF-KSQDIQLSGLGIQPKHCVIDIES------D------GELRLTPLLNA-RSCVNGSLVCS--TTQ 523 (1714)
T ss_pred HHhhc--Cceeeccc-cCcceeeecCcccCccceeeecc------C------CcEEecccccc-eeeecCceecc--ccc
Confidence 35553 45899977 68999999999999999998764 2 23777777555 89999999874 468
Q ss_pred cCCCCEEEEcCceEEEEEecCC
Q 010574 483 LFEKDTIKFGNSSREYVLLHEN 504 (507)
Q Consensus 483 L~dGDvIkFG~STreYVLl~e~ 504 (507)
|.+||.|-.|+.-| |.|..+.
T Consensus 524 L~~GdRiLwGnnHF-FrvN~PK 544 (1714)
T KOG0241|consen 524 LWHGDRILWGNNHF-FRVNLPK 544 (1714)
T ss_pred cccCceEEecccce-EEecCcc
Confidence 99999999999875 5554443
No 18
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=57.78 E-value=4.2 Score=47.03 Aligned_cols=76 Identities=14% Similarity=0.043 Sum_probs=54.7
Q ss_pred eeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCeeecCCCCEEE
Q 010574 411 CYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIK 490 (507)
Q Consensus 411 ~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIk 490 (507)
..++|+. ..|+|++.||++|..|+-|.-.... .....-++-+..+|.|-..+++....+....++.|.
T Consensus 61 ilvvG~~-~~~~~l~~hpS~S~~~~~~~S~p~~-----------~~~~~p~s~e~~~s~v~d~p~P~~Gc~D~~el~e~~ 128 (793)
T KOG1881|consen 61 ILVVGDF-KDCAELLEHPSESDAAADEFSIPAP-----------HPKPAPDAPEKHRSEVPDEPPPPEGCGDDEELAEAQ 128 (793)
T ss_pred ccCCCCC-CcccccCCCcccccccccCcCCCcc-----------cCCCCCCchhhcCCCCccCCCCCCCccccccccccc
Confidence 3678886 7999999999999999998643221 111222233557778877777766667778888888
Q ss_pred EcCceEEE
Q 010574 491 FGNSSREY 498 (507)
Q Consensus 491 FG~STreY 498 (507)
++.++..|
T Consensus 129 ~~~t~kis 136 (793)
T KOG1881|consen 129 IPKTPKIS 136 (793)
T ss_pred cCCCcccc
Confidence 99888877
No 19
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=57.46 E-value=12 Score=27.79 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=22.1
Q ss_pred CCccccCCeecCCCCeeecCCCCEEEEcCce
Q 010574 465 TNKTYLNDNPIEPQRYYELFEKDTIKFGNSS 495 (507)
Q Consensus 465 TNGTFVNGeRI~~~ryveL~dGDvIkFG~ST 495 (507)
.++.+|||+.+... -+.|..||+|.|....
T Consensus 25 ~g~V~vn~~~~~~~-~~~v~~~d~i~i~~~~ 54 (70)
T cd00165 25 HGHVLVNGKVVTKP-SYKVKPGDVIEVDGKS 54 (70)
T ss_pred cCCEEECCEEccCC-ccCcCCCCEEEEcCCC
Confidence 46788999988332 2478899999997643
No 20
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=54.35 E-value=13 Score=33.41 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=22.4
Q ss_pred cccCCeecCCCCeeecCCCCEEEEcCceEEEE
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKFGNSSREYV 499 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkFG~STreYV 499 (507)
..|||+.+.++ ..++.||+|+|......|.
T Consensus 36 V~vNG~~aKpS--~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 36 VKVNGQRAKPS--KEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred EEECCEEcccc--cccCCCCEEEEEeCCcEEE
Confidence 46899999876 4799999988776544333
No 21
>PRK11507 ribosome-associated protein; Provisional
Probab=52.91 E-value=17 Score=30.75 Aligned_cols=37 Identities=11% Similarity=0.237 Sum_probs=26.7
Q ss_pred cceeEEEeCCCCCccccCCeecCCCCeeecCCCCEEEEcCce
Q 010574 454 EVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSS 495 (507)
Q Consensus 454 ~~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~ST 495 (507)
+.+++|.+ +...|||+... .+-..|.+||+|.|.+..
T Consensus 29 ~AK~~I~e----g~V~VNGeve~-rRgkKl~~GD~V~~~g~~ 65 (70)
T PRK11507 29 QAKIAIAE----GQVKVDGAVET-RKRCKIVAGQTVSFAGHS 65 (70)
T ss_pred HHHHHHHc----CceEECCEEec-ccCCCCCCCCEEEECCEE
Confidence 34455544 56889998443 345589999999999966
No 22
>smart00363 S4 S4 RNA-binding domain.
Probab=52.02 E-value=17 Score=26.13 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=20.7
Q ss_pred CCccccCCeecCCCCeeecCCCCEEEEcC
Q 010574 465 TNKTYLNDNPIEPQRYYELFEKDTIKFGN 493 (507)
Q Consensus 465 TNGTFVNGeRI~~~ryveL~dGDvIkFG~ 493 (507)
..+.+|||+.+... .+.|..||+|.|-.
T Consensus 25 ~g~i~vng~~~~~~-~~~l~~gd~i~~~~ 52 (60)
T smart00363 25 QGRVKVNGKKVTKP-SYIVKPGDVISVRG 52 (60)
T ss_pred cCCEEECCEEecCC-CeEeCCCCEEEEcc
Confidence 35678999998322 35789999998854
No 23
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=51.78 E-value=10 Score=31.49 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=17.9
Q ss_pred CccccCCeecCCCCeeecCCCCEEEEcCceE
Q 010574 466 NKTYLNDNPIEPQRYYELFEKDTIKFGNSSR 496 (507)
Q Consensus 466 NGTFVNGeRI~~~ryveL~dGDvIkFG~STr 496 (507)
+..+|||+.... +-..|.+||+|.|+...+
T Consensus 33 g~V~VNGe~e~r-rg~Kl~~GD~V~~~~~~~ 62 (65)
T PF13275_consen 33 GEVKVNGEVETR-RGKKLRPGDVVEIDGEEY 62 (65)
T ss_dssp HHHEETTB-----SS----SSEEEEETTEEE
T ss_pred CceEECCEEccc-cCCcCCCCCEEEECCEEE
Confidence 568899986553 445899999999987763
No 24
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=50.97 E-value=14 Score=28.92 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=19.2
Q ss_pred CccccCCeecCCCCeeecCCCCEEEE
Q 010574 466 NKTYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 466 NGTFVNGeRI~~~ryveL~dGDvIkF 491 (507)
...+|||+.+... -+.|..||+|.|
T Consensus 34 G~V~VNg~~~~~~-~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGELENRR-GKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCEEccCC-CCCCCCCCEEEe
Confidence 5578999988432 358999999986
No 25
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=47.00 E-value=15 Score=27.23 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=18.4
Q ss_pred CccccCCeecCCCCeeecCCCCEE
Q 010574 466 NKTYLNDNPIEPQRYYELFEKDTI 489 (507)
Q Consensus 466 NGTFVNGeRI~~~ryveL~dGDvI 489 (507)
.+.+|||+.+.... +.|..||+|
T Consensus 26 g~V~VNg~~v~~~~-~~v~~~d~I 48 (48)
T PF01479_consen 26 GRVKVNGKVVKDPS-YIVKPGDVI 48 (48)
T ss_dssp TTEEETTEEESSTT-SBESTTEEE
T ss_pred CEEEECCEEEcCCC-CCCCCcCCC
Confidence 67899999998432 479999987
No 26
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=45.25 E-value=27 Score=29.87 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=29.2
Q ss_pred CcceeEEEeCCCCCccccCCeecCCCCeeecCCCCEEEEcCce
Q 010574 453 KEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSS 495 (507)
Q Consensus 453 ~~~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~ST 495 (507)
++.++||.| +..+|||+.-. .+-..|..||+|.|.+..
T Consensus 28 G~AK~~i~e----g~V~vNGe~Et-RRgkKlr~gd~V~i~~~~ 65 (73)
T COG2501 28 GQAKAFIAE----GEVKVNGEVET-RRGKKLRDGDVVEIPGQR 65 (73)
T ss_pred HHHHHHHHC----CeEEECCeeee-ccCCEeecCCEEEECCEE
Confidence 356677765 57899998554 345689999999999877
No 27
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=45.04 E-value=47 Score=35.89 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=8.1
Q ss_pred CCCCCChhhhhh
Q 010574 72 VSRSPSPRTRRL 83 (507)
Q Consensus 72 ~~~sp~~~~~~~ 83 (507)
-||-|||.-|-|
T Consensus 218 FPRIPVPvqkqI 229 (453)
T KOG2888|consen 218 FPRIPVPVQKQI 229 (453)
T ss_pred CCCCCchHHHHH
Confidence 467889877443
No 28
>PF02626 AHS2: Allophanate hydrolase subunit 2; InterPro: IPR003778 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 2 of allophanate hydrolase (AHS2) which is found in urea carboxylase.; PDB: 3MML_G 3VA7_A 3OEP_A 3OPF_C 3ORE_B.
Probab=43.28 E-value=23 Score=36.39 Aligned_cols=37 Identities=24% Similarity=0.432 Sum_probs=26.7
Q ss_pred CCCccccCCeecCCCCeeecCCCCEEEEcCc---eEEEEE
Q 010574 464 STNKTYLNDNPIEPQRYYELFEKDTIKFGNS---SREYVL 500 (507)
Q Consensus 464 STNGTFVNGeRI~~~ryveL~dGDvIkFG~S---TreYVL 500 (507)
.....+|||+.|.....+.|+.||+|+||.. .+.|+=
T Consensus 53 a~~~~~lng~~~~~~~~~~v~~Gd~L~~~~~~~G~r~YLA 92 (271)
T PF02626_consen 53 ADFEATLNGKPVPMWQPFLVKAGDVLKFGPPRSGARAYLA 92 (271)
T ss_dssp SCEEEEETTEEE-TTSEEEE-TT-EEEEEEESSECEEEEE
T ss_pred CCCceEECCEEccCCEEEEECCCCEEEecCCCCccEEEEE
Confidence 3344568999999999999999999999975 346653
No 29
>PRK01777 hypothetical protein; Validated
Probab=40.51 E-value=22 Score=31.26 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=23.4
Q ss_pred EeCCCCCccccCCeecCCCCeeecCCCCEEEE
Q 010574 460 MDLGSTNKTYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 460 iDLgSTNGTFVNGeRI~~~ryveL~dGDvIkF 491 (507)
+|| +++-..|||+.+... ..|++||.|.|
T Consensus 45 i~~-~~~~vgI~Gk~v~~d--~~L~dGDRVeI 73 (95)
T PRK01777 45 IDL-AKNKVGIYSRPAKLT--DVLRDGDRVEI 73 (95)
T ss_pred ccc-ccceEEEeCeECCCC--CcCCCCCEEEE
Confidence 356 677788999998754 48999999987
No 30
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=39.65 E-value=24 Score=29.30 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=17.3
Q ss_pred cccCCeecCCCCeeecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkF 491 (507)
++|||+.|.....++|.+||.|.|
T Consensus 58 v~vN~~~v~~~~~~~l~dgdev~i 81 (88)
T TIGR01687 58 ILVNGRNVDWGLGTELKDGDVVAI 81 (88)
T ss_pred EEECCEecCccCCCCCCCCCEEEE
Confidence 456777665443358999999987
No 31
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=39.56 E-value=75 Score=32.92 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=28.4
Q ss_pred CCccccCCeecCCCCeeecCCCCEEEEcCc---eEEEEE
Q 010574 465 TNKTYLNDNPIEPQRYYELFEKDTIKFGNS---SREYVL 500 (507)
Q Consensus 465 TNGTFVNGeRI~~~ryveL~dGDvIkFG~S---TreYVL 500 (507)
-....|||+.|.....+.|..||+|+||.. .+.|+-
T Consensus 54 ~~~~~ln~~~~~~~~~~~v~~Gd~L~~g~~~~G~R~YLA 92 (280)
T smart00797 54 DFPATLDGQPVPPWKPFLVRAGQVLSLGAPKAGARAYLA 92 (280)
T ss_pred CCeeeECCEEcCCCeEEEECCCCEEEeCCCCCccEEEEE
Confidence 344568999999888899999999999975 356653
No 32
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=38.69 E-value=22 Score=28.68 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=12.0
Q ss_pred cCCeecCC-CCeeecCCCCEEEE
Q 010574 470 LNDNPIEP-QRYYELFEKDTIKF 491 (507)
Q Consensus 470 VNGeRI~~-~ryveL~dGDvIkF 491 (507)
|||+.... ...+.|++||.|+|
T Consensus 45 vNG~~~~~ga~~~~l~~GD~i~~ 67 (68)
T PF14478_consen 45 VNGESANVGAGSYKLKDGDKITW 67 (68)
T ss_dssp ETTEE-SS-CCC-B--TTEEEEE
T ss_pred ECCEEhhcCcceeEeCCCCEEEe
Confidence 45554432 34468999999987
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=38.49 E-value=97 Score=33.11 Aligned_cols=10 Identities=30% Similarity=0.192 Sum_probs=4.8
Q ss_pred CCccccCCee
Q 010574 465 TNKTYLNDNP 474 (507)
Q Consensus 465 TNGTFVNGeR 474 (507)
.||+.|+|..
T Consensus 357 l~g~~~~~~~ 366 (509)
T TIGR01642 357 LNGKDTGDNK 366 (509)
T ss_pred cCCCEECCeE
Confidence 3555555543
No 34
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=37.10 E-value=46 Score=28.80 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCCccccCCeecCCCCeeecCCCCEEE--EcCceEEEEEecCC
Q 010574 464 STNKTYLNDNPIEPQRYYELFEKDTIK--FGNSSREYVLLHEN 504 (507)
Q Consensus 464 STNGTFVNGeRI~~~ryveL~dGDvIk--FG~STreYVLl~e~ 504 (507)
+.+|.|+||..|... -=.+|..|. .|..+..|.|+.++
T Consensus 22 ~~~GV~~ngrlV~T~---F~fDG~~l~~~~G~~~~~y~~~~~~ 61 (79)
T PF11012_consen 22 NESGVFRNGRLVATS---FEFDGKTLEYRTGSGTYRYQISGEN 61 (79)
T ss_pred CCCcEEECCCEEeeE---EEECCCEEEEEECCeEEEEEEcCCC
Confidence 779999999999865 346777765 57778888887664
No 35
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=36.97 E-value=24 Score=30.70 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=18.4
Q ss_pred ccCCeecC--CCCeeecCCCCEEEEc
Q 010574 469 YLNDNPIE--PQRYYELFEKDTIKFG 492 (507)
Q Consensus 469 FVNGeRI~--~~ryveL~dGDvIkFG 492 (507)
+|||..|. ...-++|++||.|.|=
T Consensus 63 lvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 63 LINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred EECCccccccCCcccCCCCcCEEEEE
Confidence 58888774 3455789999999874
No 36
>TIGR00724 urea_amlyse_rel biotin-dependent carboxylase uncharacterized domain. Urea amidolyase of Saccharomyces cerevisiae is a 1835 amino acid protein with an amidase domain, a biotin/lipoyl cofactor attachment domain, a carbamoyl-phosphate synthase L chain-like domain, and uncharacterized regions. It has both urea carboxylase and allophanate hydrolase activities. This alignment models a domain that represents uncharacterized prokaryotic proteins of about 300 amino acids, regions of prokaryotic urea carboxylase and of the urea carboxylase region of yeast urea amidolyase, and regions of other biotin-containing proteins.
Probab=36.84 E-value=82 Score=33.25 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=30.8
Q ss_pred eCCCCCccccCCeecCC-CCeeecCCCCEEEEcCce---EEEEE
Q 010574 461 DLGSTNKTYLNDNPIEP-QRYYELFEKDTIKFGNSS---REYVL 500 (507)
Q Consensus 461 DLgSTNGTFVNGeRI~~-~ryveL~dGDvIkFG~ST---reYVL 500 (507)
=.|-....+|||+.|.. ...+.|+.||+|+||... +.|+-
T Consensus 72 ltGA~~~~~lng~~~~~~~~~~~v~~Gd~L~~g~~~~G~R~YLA 115 (314)
T TIGR00724 72 VTGADTDLCLNDGQVIPQWRPYEVKRGQILSLGRLKSGMRGYLA 115 (314)
T ss_pred EeCCCCcceeCCcccCCCceEEEECCCCEEEeCCCCCccEEEEE
Confidence 34555678899999976 777999999999999753 45543
No 37
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=36.21 E-value=40 Score=31.58 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=23.8
Q ss_pred CccccCCeecCCCCeeecCCCCEEEEcCceEEEEEe
Q 010574 466 NKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLL 501 (507)
Q Consensus 466 NGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl 501 (507)
.-++|||+++.++ ..+..||+|+|-.....|+|.
T Consensus 34 G~V~vnG~~~Kps--~~V~~gd~l~v~~~~~~~~v~ 67 (133)
T PRK10348 34 GKVHYNGQRSKPS--KIVELNATLTLRQGNDERTVI 67 (133)
T ss_pred CCEEECCEECCCC--CccCCCCEEEEEECCEEEEEE
Confidence 3467899996665 467899999886665555543
No 38
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=35.87 E-value=29 Score=27.82 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=17.4
Q ss_pred ccccCCeecCCCCeeecCCCCEEEE
Q 010574 467 KTYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 467 GTFVNGeRI~~~ryveL~dGDvIkF 491 (507)
-.+|||+.|.. -..|.+||.|.|
T Consensus 51 ~v~vNg~~v~~--~~~l~~gD~v~i 73 (80)
T cd00754 51 RIAVNGEYVRL--DTPLKDGDEVAI 73 (80)
T ss_pred EEEECCeEcCC--CcccCCCCEEEE
Confidence 45678877763 357999999987
No 39
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=30.19 E-value=1.5e+02 Score=31.58 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=31.5
Q ss_pred CCCCCccccCCeecCCCCeeecCCCCEEEEcCce---EEEEE
Q 010574 462 LGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSS---REYVL 500 (507)
Q Consensus 462 LgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~ST---reYVL 500 (507)
.|-....+|||+.|.....+.++.||+|+||... +.|+-
T Consensus 72 TGad~~a~ld~~~i~~~~~~~vk~Gq~L~~g~~~~G~R~YLa 113 (314)
T COG1984 72 TGADCEATLDGQEVPPWSPYLVKAGQTLKLGRPKQGMRAYLA 113 (314)
T ss_pred eCCcccceECCEEcCCCceEEccCCCEEEecCCCCcceEEEE
Confidence 3445567899999999999999999999999763 45643
No 40
>PF14640 TMEM223: Transmembrane protein 223
Probab=29.79 E-value=1.1e+02 Score=29.66 Aligned_cols=63 Identities=22% Similarity=0.458 Sum_probs=38.1
Q ss_pred EEEEEeCCeeecceEEecccceeeecccCccCceecCCCCc--Ccc----ceEEEEecccccCCCCCCCCcceeEEEeCC
Q 010574 390 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSC--SKQ----HAVIQFRQVEKEQPDGMLSKEVRPYIMDLG 463 (507)
Q Consensus 390 rL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSV--SRq----HAvIqfR~~~~~~~dGd~~~~~r~yLiDLg 463 (507)
.|++.++|+.+ .|.. ...+|+. ..-+++|.+-+| ++. ..-|.+. +..-+||+|
T Consensus 92 ~i~L~kgG~~v----~i~T--y~~fG~~-~~~~vPl~~vs~~~~r~~~~~~i~lkvk------------g~~fyylld-- 150 (170)
T PF14640_consen 92 YIYLHKGGQNV----RITT--YAPFGRR-RDFTVPLNQVSCLTHRSDAPSQIPLKVK------------GRRFYYLLD-- 150 (170)
T ss_pred EEEEecCCcEE----EEEE--ecccCCC-CceEEcHHHcccchhccCCCceeEEEEC------------CceEEEEEe--
Confidence 57778888754 3322 3567876 355677765554 222 2233332 234589999
Q ss_pred CCCccccCCee
Q 010574 464 STNKTYLNDNP 474 (507)
Q Consensus 464 STNGTFVNGeR 474 (507)
.+|+|+|-+.
T Consensus 151 -~~G~f~n~~l 160 (170)
T PF14640_consen 151 -KRGEFVNPRL 160 (170)
T ss_pred -cCCcCCCHHH
Confidence 6999999754
No 41
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=29.27 E-value=20 Score=39.19 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=10.1
Q ss_pred CCCCCchhhhhhhhhhhhh
Q 010574 166 SRSPSPRTKRLRRAHAEKD 184 (507)
Q Consensus 166 srs~sp~~~r~~~~~~~~~ 184 (507)
...-.|-.|+---|+++.+
T Consensus 220 ~ai~kP~kK~~k~a~~~is 238 (479)
T KOG4676|consen 220 RAIIKPHKKRSKSAERRIS 238 (479)
T ss_pred hhhcCccccchHHHHHHHH
Confidence 3444566666555555543
No 42
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=27.11 E-value=61 Score=26.75 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=19.7
Q ss_pred CccccCCeecCCCCeeecCCCCEEEEcCce
Q 010574 466 NKTYLNDNPIEPQRYYELFEKDTIKFGNSS 495 (507)
Q Consensus 466 NGTFVNGeRI~~~ryveL~dGDvIkFG~ST 495 (507)
+||.|.| +|..+ .|+.||.|.|..+.
T Consensus 13 ~g~vv~G-~v~~G---~i~~G~~v~i~P~~ 38 (82)
T cd04089 13 MGTVVLG-KVESG---TIKKGDKLLVMPNK 38 (82)
T ss_pred CCEEEEE-EEeee---EEecCCEEEEeCCC
Confidence 4888888 56655 78899999888753
No 43
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=26.61 E-value=25 Score=34.68 Aligned_cols=13 Identities=46% Similarity=0.434 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCCCC
Q 010574 1 MGRNLSNHSESPVRD 15 (507)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (507)
||++-+ |+|+...
T Consensus 1 mgR~rs--srsr~~~ 13 (196)
T KOG3263|consen 1 MGRSRS--SRSRDDR 13 (196)
T ss_pred CCcCcc--cccccch
Confidence 787776 4444433
No 44
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=25.77 E-value=40 Score=26.72 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=16.6
Q ss_pred cccCCeecCCCCeeecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkF 491 (507)
..|||+.+.-. ++|.+||+|.|
T Consensus 37 A~Vng~~vdl~--~~L~~~d~v~i 58 (60)
T PF02824_consen 37 AKVNGQLVDLD--HPLEDGDVVEI 58 (60)
T ss_dssp EEETTEEEETT--SBB-SSEEEEE
T ss_pred EEEcCEECCCC--CCcCCCCEEEE
Confidence 35888888754 58999999987
No 45
>PF12538 FtsK_SpoIIIE_N: DNA transporter ; InterPro: IPR022206 This domain family is found in bacteria, and is typically between 107 and 121 amino acids in length. The family is found in association with PF01580 from PFAM. The FtsK/SpoIIIE family of DNA transporters are responsible for translocating missegregated chromosomes after the completion of cell division. ; PDB: 1WV3_A.
Probab=25.69 E-value=1.6e+02 Score=26.22 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=21.6
Q ss_pred EEEEeCCeeecceEEecc--cceeeecccCccCceecCCCCcCccceEEEEec
Q 010574 391 LYVFKAGEMLKEPLYIHR--QSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQ 441 (507)
Q Consensus 391 L~VfKgGe~l~e~i~L~~--qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~ 441 (507)
|.||-+.. + ..+.|.. ...++||-+ ..++|.|.+. ...|++..
T Consensus 2 L~I~Y~~~-~-qk~~L~~~~~k~vtIG~~-~~~~ITi~~l-----~~~I~l~~ 46 (113)
T PF12538_consen 2 LWIFYGQQ-L-QKYELSPKEDKTVTIGND-EKADITIPSL-----EEPITLKW 46 (113)
T ss_dssp EEEEETTE-E-EEEE--T--T--EEEES--TTSSEE-TT---------EEEEE
T ss_pred EEEEeCCE-E-EEEECCcccCccEEECCC-ccccEEccCC-----CccEEEEE
Confidence 45555433 3 2466666 789999998 6999998765 44455443
No 46
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=25.46 E-value=52 Score=27.11 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=11.2
Q ss_pred cCCCCEEEEcCceEEE
Q 010574 483 LFEKDTIKFGNSSREY 498 (507)
Q Consensus 483 L~dGDvIkFG~STreY 498 (507)
+++||+|.||+-.++|
T Consensus 54 ~~~GD~V~Ig~~eFe~ 69 (69)
T PF09269_consen 54 AKEGDTVRIGDYEFEY 69 (69)
T ss_dssp --TT-EEEETTEEEE-
T ss_pred CCCCCEEEEcCEEEEC
Confidence 8899999999988776
No 47
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=25.14 E-value=1.2e+02 Score=35.03 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=6.9
Q ss_pred CCcCCCCcccCCCCCCCh
Q 010574 105 SRKSDRGTHIGKSSSPSP 122 (507)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~ 122 (507)
+.-.++.. .|.-+++.|
T Consensus 667 sr~~~r~~-~g~~~~s~~ 683 (757)
T KOG4368|consen 667 SRSPTPPS-AGLGSNSAP 683 (757)
T ss_pred CCCCCCCC-CccccCCCc
Confidence 33333333 344444444
No 48
>PRK06437 hypothetical protein; Provisional
Probab=24.10 E-value=72 Score=25.95 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=16.6
Q ss_pred cccCCeecCCCCeeecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkF 491 (507)
..|||..|+ .-+.|++||.|.|
T Consensus 39 V~vNg~iv~--~~~~L~dgD~Vei 60 (67)
T PRK06437 39 VIVNGSPVL--EDHNVKKEDDVLI 60 (67)
T ss_pred EEECCEECC--CceEcCCCCEEEE
Confidence 456777776 3458999999976
No 49
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=23.56 E-value=73 Score=26.85 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=16.9
Q ss_pred cCCeecCCCCeeecCCCCEEEE
Q 010574 470 LNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 470 VNGeRI~~~ryveL~dGDvIkF 491 (507)
++|++|... ..|++||+|+|
T Consensus 54 ~~gq~Vgl~--~~L~d~DvVeI 73 (75)
T cd01666 54 HSPQRVGLD--HVLEDEDVVQI 73 (75)
T ss_pred CCCeECCCC--CEecCCCEEEE
Confidence 588999865 58999999987
No 50
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=23.16 E-value=58 Score=26.91 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.3
Q ss_pred cCCCCEEEEcCceEEE
Q 010574 483 LFEKDTIKFGNSSREY 498 (507)
Q Consensus 483 L~dGDvIkFG~STreY 498 (507)
+++||+|.||+..++|
T Consensus 54 ~~~GD~V~Ig~~eFe~ 69 (69)
T TIGR03595 54 AKDGDTVRIGDFEFEW 69 (69)
T ss_pred CCCCCEEEEccEEEeC
Confidence 8999999999988765
No 51
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=22.47 E-value=62 Score=25.63 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=15.5
Q ss_pred cCCeecCCCC--eeecCCCCEEEE
Q 010574 470 LNDNPIEPQR--YYELFEKDTIKF 491 (507)
Q Consensus 470 VNGeRI~~~r--yveL~dGDvIkF 491 (507)
|||+-|.... .+.|++||.|.|
T Consensus 34 vN~~iv~~~~~~~~~L~~gD~vei 57 (64)
T TIGR01683 34 VNGEIVPRSEWDDTILKEGDRIEI 57 (64)
T ss_pred ECCEEcCHHHcCceecCCCCEEEE
Confidence 5777665433 257999999976
No 52
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=21.90 E-value=1.4e+02 Score=33.10 Aligned_cols=12 Identities=58% Similarity=0.808 Sum_probs=7.4
Q ss_pred cCCCCCCChhhh
Q 010574 114 IGKSSSPSPRTR 125 (507)
Q Consensus 114 ~~~~~~~~~~~~ 125 (507)
.+-+.+|+|+-+
T Consensus 374 rkssr~~~~RSR 385 (479)
T KOG4676|consen 374 RKSSRSPSPRSR 385 (479)
T ss_pred CCcCCCCCcccc
Confidence 344567887744
No 53
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=21.89 E-value=49 Score=26.19 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=16.6
Q ss_pred cccCCeecCC-CCeeecCCCCEEEE
Q 010574 468 TYLNDNPIEP-QRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~-~ryveL~dGDvIkF 491 (507)
.+|||+.|.. ..-..|.+||.|.|
T Consensus 46 v~vN~~~v~~~~~~~~l~~gD~V~i 70 (77)
T PF02597_consen 46 VAVNGEIVPDDGLDTPLKDGDEVAI 70 (77)
T ss_dssp EEETTEEEGGGTTTSBEETTEEEEE
T ss_pred EEECCEEcCCccCCcCcCCCCEEEE
Confidence 4567776665 12358999999977
No 54
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=21.47 E-value=2e+02 Score=35.57 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCCCCccccCCeecCCCCeeecCCCCEEEEcCce----EEEEEe
Q 010574 462 LGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSS----REYVLL 501 (507)
Q Consensus 462 LgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~ST----reYVLl 501 (507)
.|-.....|||+.|.....+.|+.||+|+||... +.|+-+
T Consensus 522 tGa~~~~~l~g~~v~~~~~~~v~~G~~L~~g~~~~~G~r~Ylav 565 (1201)
T TIGR02712 522 TGAPAPATLDGQPVPQWKPITVKAGSTLSIGKIAGSGCRTYLAI 565 (1201)
T ss_pred eCCCCcceECCEEcCCCeEEEECCCCEEEecCCCcCceEEEEEe
Confidence 4555667899999999999999999999999765 677654
No 55
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=20.91 E-value=99 Score=33.43 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=4.8
Q ss_pred CCCCCCCCC
Q 010574 290 DRSTSPLDR 298 (507)
Q Consensus 290 ~~~~~p~~~ 298 (507)
.++..|.-+
T Consensus 357 ~~s~~p~rs 365 (367)
T KOG0835|consen 357 ERSELPRRS 365 (367)
T ss_pred ccccccCcc
Confidence 555555443
No 56
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=20.76 E-value=78 Score=25.09 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=16.4
Q ss_pred cccCCeecCCCC--eeecCCCCEEEE
Q 010574 468 TYLNDNPIEPQR--YYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~r--yveL~dGDvIkF 491 (507)
..|||+-|.... .+.|++||.|.|
T Consensus 33 V~vNg~~v~~~~~~~~~L~~gD~V~i 58 (65)
T cd00565 33 VALNGEIVPRSEWASTPLQDGDRIEI 58 (65)
T ss_pred EEECCEEcCHHHcCceecCCCCEEEE
Confidence 346777666431 257999999976
No 57
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.73 E-value=97 Score=27.79 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=18.0
Q ss_pred ccCCe--ecCCCCeeecCCCCEEEEc
Q 010574 469 YLNDN--PIEPQRYYELFEKDTIKFG 492 (507)
Q Consensus 469 FVNGe--RI~~~ryveL~dGDvIkFG 492 (507)
.||++ .|.....|.|.+||.|.|=
T Consensus 65 LINd~DWeLleke~y~ledgDiIvfi 90 (96)
T COG5131 65 LINDMDWELLEKERYPLEDGDIIVFI 90 (96)
T ss_pred EEcCccHhhhhcccccCCCCCEEEEE
Confidence 36776 4555666899999999874
No 58
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=20.15 E-value=87 Score=26.81 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=18.7
Q ss_pred cccCCeecCCCCeeecCCCCEEEEcC
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKFGN 493 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkFG~ 493 (507)
.+|||..+... +.|++||.|.|=.
T Consensus 52 i~vNG~~v~~~--~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 52 ILVNGRPVDFD--YRLKDGDRVAVYP 75 (81)
T ss_pred EEECCEECCCc--ccCCCCCEEEEEe
Confidence 36889888864 6899999998743
Done!