Query 010574
Match_columns 507
No_of_seqs 237 out of 1712
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 09:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3elv_A PRE-mRNA leakage protei 100.0 2.4E-36 8.2E-41 288.4 8.1 137 350-495 27-193 (205)
2 4h87_A Kanadaptin; FHA domain 100.0 1.7E-32 5.8E-37 243.5 15.4 125 373-501 5-129 (130)
3 3els_A PRE-mRNA leakage protei 100.0 9.9E-30 3.4E-34 232.9 7.2 116 371-495 1-146 (158)
4 2jpe_A Nuclear inhibitor of pr 99.9 2.2E-27 7.5E-32 211.2 7.9 135 357-504 4-138 (140)
5 3gqs_A Adenylate cyclase-like 99.9 2.6E-22 9E-27 170.4 11.6 104 385-503 1-104 (106)
6 1uht_A Expressed protein; FHA 99.9 6.4E-22 2.2E-26 170.6 10.5 105 384-502 8-112 (118)
7 3va4_A Mediator of DNA damage 99.8 1E-20 3.5E-25 168.4 11.9 104 388-504 24-129 (132)
8 1r21_A Antigen KI-67; beta san 99.8 1.1E-20 3.7E-25 165.3 11.2 105 379-501 3-108 (128)
9 2kfu_A RV1827 PThr 22; FHA dom 99.8 2.1E-20 7.2E-25 172.1 13.3 99 384-501 51-149 (162)
10 2xt9_B Putative signal transdu 99.8 3.5E-20 1.2E-24 159.7 12.9 98 384-500 7-104 (115)
11 2jqj_A DNA damage response pro 99.8 4.7E-20 1.6E-24 166.1 14.2 104 389-502 19-123 (151)
12 2kb3_A Oxoglutarate dehydrogen 99.8 4.1E-20 1.4E-24 166.5 13.7 98 384-500 42-139 (143)
13 1mzk_A Kinase associated prote 99.8 3.5E-20 1.2E-24 164.9 11.0 104 387-503 6-121 (139)
14 3hx1_A SLR1951 protein; P74513 99.8 1.5E-19 5.2E-24 160.2 12.3 103 387-503 9-116 (131)
15 3po8_A RV0020C protein, putati 99.8 1.6E-19 5.6E-24 151.5 11.9 82 402-501 16-97 (100)
16 1g3g_A Protien kinase SPK1; FH 99.8 8.9E-20 3E-24 166.9 10.5 114 372-502 19-147 (164)
17 2pie_A E3 ubiquitin-protein li 99.8 2E-19 6.7E-24 159.9 12.1 100 386-501 7-117 (138)
18 2csw_A Ubiquitin ligase protei 99.8 7E-20 2.4E-24 164.2 8.1 92 386-493 15-110 (145)
19 1gxc_A CHK2, CDS1, serine/thre 99.8 6.2E-19 2.1E-23 158.7 11.8 102 387-502 28-140 (149)
20 1dmz_A Protein (protein kinase 99.8 3.9E-19 1.3E-23 162.0 10.4 102 402-505 18-127 (158)
21 1lgp_A Cell cycle checkpoint p 99.8 9.9E-19 3.4E-23 150.1 10.0 98 390-502 6-110 (116)
22 3oun_A Putative uncharacterize 99.8 2.3E-18 7.9E-23 158.4 10.5 79 402-498 78-156 (157)
23 1qu5_A Protein kinase SPK1; FH 99.8 9.2E-19 3.1E-23 163.6 7.5 101 402-504 42-150 (182)
24 1wln_A Afadin; beta sandwich, 99.7 6.8E-18 2.3E-22 146.6 11.5 90 389-494 12-106 (120)
25 1g6g_A Protein kinase RAD53; b 99.7 1.1E-17 3.7E-22 146.6 11.3 79 410-502 36-119 (127)
26 4ejq_A Kinesin-like protein KI 99.7 1.9E-17 6.4E-22 150.5 11.5 101 390-502 40-143 (154)
27 2ff4_A Probable regulatory pro 99.7 3.6E-17 1.2E-21 165.4 12.1 85 403-504 300-384 (388)
28 3huf_A DNA repair and telomere 99.7 2E-17 6.9E-22 167.0 8.2 113 389-505 2-116 (325)
29 3fm8_A Kinesin-like protein KI 99.6 1.6E-15 5.3E-20 134.4 9.8 94 390-502 28-123 (124)
30 3uv0_A Mutator 2, isoform B; F 99.4 1.6E-12 5.5E-17 112.6 9.6 80 403-501 14-100 (102)
31 3i6u_A CDS1, serine/threonine- 99.4 1.5E-12 5.3E-17 130.5 10.8 94 389-496 10-113 (419)
32 4a0e_A YSCD, type III secretio 99.3 9.8E-12 3.3E-16 110.9 9.7 95 388-502 4-99 (123)
33 3kt9_A Aprataxin; FHA domain, 99.2 5.8E-11 2E-15 102.7 10.6 86 403-503 16-101 (102)
34 4egx_A Kinesin-like protein KI 99.1 2E-10 6.7E-15 107.7 11.8 101 390-502 70-173 (184)
35 1wv3_A Similar to DNA segregat 99.0 4.4E-10 1.5E-14 108.6 8.5 79 403-498 86-166 (238)
36 2brf_A Bifunctional polynucleo 99.0 9.9E-10 3.4E-14 96.3 9.6 86 403-503 21-107 (110)
37 1yj5_C 5' polynucleotide kinas 98.9 2.3E-09 7.7E-14 97.9 9.4 96 389-502 10-106 (143)
38 1ujx_A Polynucleotide kinase 3 98.9 2.4E-09 8.1E-14 95.1 6.0 96 389-502 17-113 (119)
39 1wv3_A Similar to DNA segregat 75.6 6.4 0.00022 37.7 7.4 45 390-440 3-47 (238)
40 2k6p_A Uncharacterized protein 47.6 16 0.00053 29.5 3.6 33 466-500 26-58 (92)
41 1dm9_A Hypothetical 15.5 KD pr 41.2 20 0.00069 31.5 3.6 27 466-494 34-60 (133)
42 2cu3_A Unknown function protei 38.2 13 0.00043 28.4 1.6 24 468-491 32-57 (64)
43 2k5p_A THis protein, thiamine- 37.2 11 0.00038 30.4 1.2 24 468-491 37-62 (78)
44 2k9x_A Tburm1, uncharacterized 35.3 13 0.00046 31.9 1.4 24 468-491 70-95 (110)
45 1p9k_A ORF, hypothetical prote 35.1 23 0.00078 28.0 2.7 31 466-497 46-76 (79)
46 2kl0_A Putative thiamin biosyn 34.5 9.4 0.00032 30.4 0.3 24 468-491 33-58 (73)
47 1tyg_B YJBS; alpha beta barrel 34.1 16 0.00054 30.3 1.7 24 468-491 55-80 (87)
48 2q5w_D Molybdopterin convertin 31.7 27 0.00092 26.9 2.5 22 468-491 49-70 (77)
49 1wgk_A Riken cDNA 2900073H19 p 31.0 14 0.00048 31.9 0.9 24 468-491 76-101 (114)
50 3po0_A Small archaeal modifier 30.9 27 0.00091 27.8 2.5 23 467-491 60-82 (89)
51 3mml_A Allophanate hydrolase s 30.7 76 0.0026 32.2 6.2 39 463-501 78-119 (318)
52 2hj1_A Hypothetical protein; s 28.3 19 0.00067 30.4 1.2 28 461-491 55-82 (97)
53 1vjk_A Molybdopterin convertin 25.9 33 0.0011 28.0 2.2 22 468-491 70-91 (98)
54 1fm0_D Molybdopterin convertin 25.8 39 0.0013 26.1 2.5 22 468-491 53-74 (81)
55 2g1e_A Hypothetical protein TA 25.8 31 0.0011 27.2 2.0 24 468-491 58-83 (90)
56 3dwg_C 9.5 kDa culture filtrat 25.3 33 0.0011 27.5 2.1 24 468-491 61-86 (93)
57 1f0z_A THis protein; ubiquitin 25.3 12 0.0004 28.7 -0.6 24 468-491 34-59 (66)
58 3rpf_C Molybdopterin convertin 25.0 33 0.0011 26.6 1.9 22 469-491 46-67 (74)
59 1ryj_A Unknown; beta/alpha pro 24.8 45 0.0015 25.8 2.7 21 469-491 43-63 (70)
60 2l52_A Methanosarcina acetivor 23.9 28 0.00097 28.7 1.5 28 464-491 63-92 (99)
61 3hvz_A Uncharacterized protein 23.4 32 0.0011 27.9 1.6 23 468-492 44-66 (78)
62 2qjl_A URM1, ubiquitin-related 21.9 41 0.0014 27.6 2.1 24 468-491 67-92 (99)
63 1rws_A Hypothetical protein PF 21.2 21 0.00073 28.1 0.2 22 468-491 49-70 (77)
No 1
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=100.00 E-value=2.4e-36 Score=288.45 Aligned_cols=137 Identities=37% Similarity=0.537 Sum_probs=97.1
Q ss_pred hccCCCccccccccccccccCCceecccCCCCCCCCCC-------------ceEEEEEeCCee---ecceEEecccceee
Q 010574 350 EKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSV-------------RWRLYVFKAGEM---LKEPLYIHRQSCYL 413 (507)
Q Consensus 350 ~KekPnFe~SG~La~dtNtv~GVtLkysePpeAr~P~~-------------~wrL~VfKgGe~---l~e~i~L~~qs~yl 413 (507)
.+++|||++||+|++++|+++||+|+|++|+||.+|.. .|.|+|||+|.. ..+.|.|..+++|+
T Consensus 27 ~~~~pnf~~sg~L~~~~n~~~gv~lky~eP~~a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~~~~i~~~~L~~~s~y~ 106 (205)
T 3elv_A 27 IDIMPDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYL 106 (205)
T ss_dssp -------------------------CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCTTCCSEEEECSSCSEEE
T ss_pred ccccCCCcccccchhhhcccccEEEeccCCCcccCCchHHhhcccccccCCceEEEEEeCCCcccccceEEEecCCCcee
Confidence 36999999999999999999999999999999999853 477999998762 23579999999999
Q ss_pred ecccC--------------ccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCC
Q 010574 414 FGRER--------------RVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQR 479 (507)
Q Consensus 414 IGRdr--------------~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~r 479 (507)
|||++ ..|||+|+|++||++||+|++.... +...|||+||+|+|||||||++|.+..
T Consensus 107 IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~---------~~~~~~l~DLgStNGTfVNG~rI~~~~ 177 (205)
T 3elv_A 107 VGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVR---------GILKCYVMDLDSSNGTCLNNVVIPGAR 177 (205)
T ss_dssp EEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEET---------TEEEEEEEECSCSSCCEETTEECCBTS
T ss_pred ecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCC---------CceeEEEEeCCCCCCCeECCEECCCCc
Confidence 99983 3699999999999999999987521 124699999999999999999999999
Q ss_pred eeecCCCCEEEEcCce
Q 010574 480 YYELFEKDTIKFGNSS 495 (507)
Q Consensus 480 yveL~dGDvIkFG~ST 495 (507)
+++|.+||+|+||.++
T Consensus 178 ~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 178 YIELRSGDVLTLSEFE 193 (205)
T ss_dssp CEECCTTCEEESSSSG
T ss_pred eeECCCCCEEEECCCC
Confidence 9999999999999875
No 2
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=243.48 Aligned_cols=125 Identities=32% Similarity=0.513 Sum_probs=108.1
Q ss_pred eecccCCCCCCCCCCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCC
Q 010574 373 TLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLS 452 (507)
Q Consensus 373 tLkysePpeAr~P~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~ 452 (507)
..+|.+|+||.+|...|+|+|+++|..+ ..+.|..+.+|+|||+ ..|||+|+|++||++||+|+|+....... ...
T Consensus 5 ~ppy~~P~wa~~p~~~~~L~v~k~g~~~-~~~~L~~~~~~~IGR~-~~~di~l~~~~VSr~HA~I~~r~~~~~~~--~~~ 80 (130)
T 4h87_A 5 APPYQEPPWGGPATAPYSLETLKGGTIL-GTRSLKGTSYCLFGRL-SGCDVCLEHPSVSRYHAVLQHRASGPDGE--CDS 80 (130)
T ss_dssp CCSCCCCTTBCCCCSCCEEEEEETTEEE-EEEECTTCSEEEEESS-TTSSEECCCTTSCSSCEEEEEBCCCCCC------
T ss_pred CcCCCCCCCccCCCCCEEEEEEECCeee-eeEEeCCCceEEEcCC-cCCCEEeCCCCcchhcEEEEEecccCccc--eec
Confidence 4569999999999999999999999877 4789988899999998 68999999999999999999975431111 012
Q ss_pred CcceeEEEeCCCCCccccCCeecCCCCeeecCCCCEEEEcCceEEEEEe
Q 010574 453 KEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLL 501 (507)
Q Consensus 453 ~~~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl 501 (507)
....|||+||+|+|||||||++|.+..+++|.+||+|+||.++++|||+
T Consensus 81 ~~~~~~l~Dl~StNGT~vNg~ri~~~~~~~L~~GD~I~~G~str~yvl~ 129 (130)
T 4h87_A 81 NGPGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQ 129 (130)
T ss_dssp --CCEEEEECSCSSCEEETTEECCTTCCEECCTTCEEEETTCSEEEEEE
T ss_pred cCCcceEeeCCCCCceEECCEECCCCceeECCCCCEEEECCceEEEEEc
Confidence 2457999999999999999999999999999999999999999999996
No 3
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.9e-30 Score=232.93 Aligned_cols=116 Identities=37% Similarity=0.531 Sum_probs=97.1
Q ss_pred CceecccCCCCCCCCCC-------------ceEEEEEeCCee---ecceEEecccceeeecccC--------------cc
Q 010574 371 GVTLLFNEPPDARKPSV-------------RWRLYVFKAGEM---LKEPLYIHRQSCYLFGRER--------------RV 420 (507)
Q Consensus 371 GVtLkysePpeAr~P~~-------------~wrL~VfKgGe~---l~e~i~L~~qs~ylIGRdr--------------~~ 420 (507)
||+|+|++|++|.+|.. .|.|+||++|.. ..+.|.|..+.+|+|||+. ..
T Consensus 1 ~~~l~~~ep~~a~~p~~~w~~~~~~~~~~~~~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~ 80 (158)
T 3els_A 1 GAMGKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVV 80 (158)
T ss_dssp ----CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCC
T ss_pred CceeEecCCccccCCchhhhccccCcccCCceEEEEEeCCccCcccceEEEecCCCceEecccccccccccccccccccc
Confidence 78999999999999953 477999999862 3357999999999999984 36
Q ss_pred CceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCeeecCCCCEEEEcCce
Q 010574 421 ADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSS 495 (507)
Q Consensus 421 cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~ST 495 (507)
|||+|++++||++||+|++.... +...|||+||+|+|||||||++|....+++|.+||+|+||.++
T Consensus 81 ~Di~l~~~~VSr~HA~I~~~~~~---------~~~~~~l~Dl~StNGT~VNg~ri~~~~~~~L~~GD~I~~G~s~ 146 (158)
T 3els_A 81 ADIGIPEETSSKQHCVIQFRNVR---------GILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFE 146 (158)
T ss_dssp CSEEECCTTSCSSCEEEEEEEET---------TEEEEEEEECSCSSCCEETTEECCTTCCEECCTTEEEESSSCG
T ss_pred CCEEcCCCCCCcccEEEEEEccC---------CeeEEEEEeCCCCCccEECCEEcCCCceEEcCCCCEEEECCCC
Confidence 99999999999999999997521 1235999999999999999999999999999999999999765
No 4
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.94 E-value=2.2e-27 Score=211.17 Aligned_cols=135 Identities=33% Similarity=0.523 Sum_probs=113.5
Q ss_pred cccccccccccccCCceecccCCCCCCCCCCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceE
Q 010574 357 ELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAV 436 (507)
Q Consensus 357 e~SG~La~dtNtv~GVtLkysePpeAr~P~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAv 436 (507)
+.++.++.++|.... ++.|.+|.|+..|...|.|+|++++... ..|.|.....|+|||+...|||+|+++.||++||+
T Consensus 4 g~~~~~~~~~~~~~~-~~~~~~P~~a~~p~~~~~L~v~~g~~~g-~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~ 81 (140)
T 2jpe_A 4 GSPNSMAAAVNSGSS-LPLFDCPTWAGKPPPGLHLDVVKGDKLI-EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAA 81 (140)
T ss_dssp -----CCCCCCSSSC-CCSCCCCSSBCCCCSSCBEEEESSSSEE-EEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBE
T ss_pred CcCCcccccccccCC-ccccCCCCcccCCCcCEEEEEEcCCCcc-eEEEeCCCCeEEecCCCccCCEEeCCCCcChhheE
Confidence 456778888888866 6799999999999999999999887654 46788766679999994339999999999999999
Q ss_pred EEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCeeecCCCCEEEEcCceEEEEEecCC
Q 010574 437 IQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHEN 504 (507)
Q Consensus 437 IqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~e~ 504 (507)
|.+... ...|||+||+|+|||||||++|.+..++.|.+||+|.||.+++.|+|...+
T Consensus 82 i~~~~~-----------~~~~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~gd~i~~G~~~~~f~~~~~p 138 (140)
T 2jpe_A 82 LVYHKH-----------LKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKP 138 (140)
T ss_dssp EEEBSS-----------SCCEEEECCSCSSCEESSSCEECSSSCCEECTTCCBBCSSCCCCBCCBCCC
T ss_pred EEEECC-----------CCcEEEEECCCCCCeEECCEECCCCccEECCCCCEEEECCceEEEEEecCC
Confidence 998641 146999999999999999999998888999999999999999999887654
No 5
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.87 E-value=2.6e-22 Score=170.39 Aligned_cols=104 Identities=25% Similarity=0.302 Sum_probs=85.3
Q ss_pred CCCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCC
Q 010574 385 PSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGS 464 (507)
Q Consensus 385 P~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgS 464 (507)
|+..|.|+++.+.... ..|.|.....|+|||+...|||+|+++.||++||.|.+.. .+.|||+||+|
T Consensus 1 p~~~~~L~v~~G~~~g-~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~------------~~~~~l~Dl~S 67 (106)
T 3gqs_A 1 QPSRFLLKVLAGANIG-AEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGN------------DNSVLIEDLGS 67 (106)
T ss_dssp --CEEEEEECC-CCTT-CEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECT------------TSCEEEEECSC
T ss_pred CCceEEEEEEeCCCCc-EEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECC------------CCcEEEEECcC
Confidence 4567999999876544 5788877677999998337999999999999999999862 14599999999
Q ss_pred CCccccCCeecCCCCeeecCCCCEEEEcCceEEEEEecC
Q 010574 465 TNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHE 503 (507)
Q Consensus 465 TNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~e 503 (507)
+|||||||++|.. .+.|.+||+|.||...+.|+-..+
T Consensus 68 ~nGt~vng~~i~~--~~~L~~Gd~i~~G~~~~~~~~~~~ 104 (106)
T 3gqs_A 68 KNGVIVEGRKIEH--QSTLSANQVVALGTTLFLLVDYAA 104 (106)
T ss_dssp SSCCEETTEECSS--EEECCTTCCEEETTEEEEEEEEC-
T ss_pred CCCeEECCEECCC--CeECCCCCEEEECCEEEEEEccCC
Confidence 9999999999986 569999999999999877765433
No 6
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.86 E-value=6.4e-22 Score=170.64 Aligned_cols=105 Identities=28% Similarity=0.276 Sum_probs=87.1
Q ss_pred CCCCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCC
Q 010574 384 KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLG 463 (507)
Q Consensus 384 ~P~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLg 463 (507)
++.+.|.|.++.+.... ..|.|.....++|||+...|||+|+++.||++||+|.+.. ..|||+||+
T Consensus 8 ~~~p~l~L~v~~g~~~g-~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-------------~~~~l~Dl~ 73 (118)
T 1uht_A 8 MVTPSLRLVFVKGPREG-DALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS-------------GNWVIQDLG 73 (118)
T ss_dssp CCSCEEEEEESSSTTTT-CBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS-------------SSEEEECCC
T ss_pred CCCCeEEEEEEeCCCCC-cEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC-------------CEEEEEECC
Confidence 33457888888765433 4567765567999998458999999999999999999853 469999999
Q ss_pred CCCccccCCeecCCCCeeecCCCCEEEEcCceEEEEEec
Q 010574 464 STNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLH 502 (507)
Q Consensus 464 STNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~ 502 (507)
|+|||||||++|.+..++.|.+||+|+||...+.|+.+.
T Consensus 74 S~nGT~vng~~l~~~~~~~L~~gd~i~lG~~~~~~~~~~ 112 (118)
T 1uht_A 74 SSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFV 112 (118)
T ss_dssp CSSCCEESSSBCCTTCEEECCTTEEEEETTTEEEEEEEE
T ss_pred CCCCeEECCEECCCCCeEEcCCCCEEEECCeEEEEEEEe
Confidence 999999999999988889999999999999987665443
No 7
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.84 E-value=1e-20 Score=168.44 Aligned_cols=104 Identities=25% Similarity=0.297 Sum_probs=86.2
Q ss_pred ceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCc
Q 010574 388 RWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNK 467 (507)
Q Consensus 388 ~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNG 467 (507)
...|.|+.++......|.|. ...++|||+ ..|||+|+++.||++||.|.+... ...|||+||+|+||
T Consensus 24 ~g~L~v~~g~~~~g~~~~L~-~~~~~IGR~-~~~di~l~d~~VSr~HA~i~~~~~-----------~~~~~l~Dl~S~NG 90 (132)
T 3va4_A 24 IGQLRLFSGTHGPERDFPLY-LGKNVVGRS-PDCSVALPFPSISKQHAVIEISAW-----------NKAPILQDCGSLNG 90 (132)
T ss_dssp SEEEEECCBTTBSCEEEEEC-SEEEEEESS-TTSSEECCCTTSCTTCEEEEECST-----------TSCCEEEECSCSSC
T ss_pred cEEEEEEeCCCCCceEEEEC-CCCEEEccC-CCCCEEeCCCCcChhHEEEEEEcC-----------CCEEEEEECCCCCC
Confidence 34788887765233467775 457999998 689999999999999999998631 14699999999999
Q ss_pred cccCCee--cCCCCeeecCCCCEEEEcCceEEEEEecCC
Q 010574 468 TYLNDNP--IEPQRYYELFEKDTIKFGNSSREYVLLHEN 504 (507)
Q Consensus 468 TFVNGeR--I~~~ryveL~dGDvIkFG~STreYVLl~e~ 504 (507)
|||||++ |.+..++.|.+||+|+||...+.|+.+..+
T Consensus 91 T~vNg~~i~l~~~~~~~L~~GD~I~lG~~~l~f~~~~~p 129 (132)
T 3va4_A 91 TQIVKPPRVLPPGVSHRLRDQELILFADFPCQYHRLDVP 129 (132)
T ss_dssp EEETTTTEEECTTCCEECCTTCEEEETTEEEEEEECCCC
T ss_pred eEECCEEcccCCCCEEECCCCCEEEECCEEEEEEECCCC
Confidence 9999998 677788999999999999999999887543
No 8
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.83 E-value=1.1e-20 Score=165.29 Aligned_cols=105 Identities=28% Similarity=0.263 Sum_probs=82.7
Q ss_pred CCCCCCCCCceEEEEEeC-CeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCccee
Q 010574 379 PPDARKPSVRWRLYVFKA-GEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRP 457 (507)
Q Consensus 379 PpeAr~P~~~wrL~VfKg-Ge~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~ 457 (507)
|.+.......+.|+++.+ +.. ...|.|. ...++|||+ ..|||+|+++.||++||+|.+.. ..|
T Consensus 3 p~~~g~~~~~~~L~v~~~~~~~-g~~~~l~-~~~~~IGR~-~~~di~l~d~~VSr~Ha~i~~~~-------------~~~ 66 (128)
T 1r21_A 3 PEFPGGMWPTRRLVTIKRSGVD-GPHFPLS-LSTCLFGRG-IECDIRIQLPVVSKQHCKIEIHE-------------QEA 66 (128)
T ss_dssp ------CCCCEEEEEEEETTEE-EEEEECC-SSEEEEESS-TTSSEECCCTTSCTTCEEEEECS-------------SCE
T ss_pred CCcCCCCCCceEEEEEeCCCCC-ceEEEEC-CCCEEECCC-CCCCEEECCCCCChhHEEEEEEC-------------CEE
Confidence 334444445678888874 443 3467775 467999998 58999999999999999999853 469
Q ss_pred EEEeCCCCCccccCCeecCCCCeeecCCCCEEEEcCceEEEEEe
Q 010574 458 YIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLL 501 (507)
Q Consensus 458 yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl 501 (507)
||.||+|+|||||||++|.. ++.|.+||+|.||...+.|...
T Consensus 67 ~l~Dl~S~nGt~vNg~~i~~--~~~L~~Gd~i~iG~~~~~~~~~ 108 (128)
T 1r21_A 67 ILHNFSSTNPTQVNGSVIDE--PVRLKHGDVITIIDRSFRYENE 108 (128)
T ss_dssp EECCCCSSSCCEETTEECSS--CEECCTTEEEECSSCEEEEEEC
T ss_pred EEEECCCCCCEEECCEECCC--cEEcCCCCEEEECCEEEEEEeC
Confidence 99999999999999999983 6799999999999988777654
No 9
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.83 E-value=2.1e-20 Score=172.12 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=82.9
Q ss_pred CCCCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCC
Q 010574 384 KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLG 463 (507)
Q Consensus 384 ~P~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLg 463 (507)
.|...|.|+|+.+.... ..|.|. ...++|||+ ..|||+|+++.||++||+|.+.. ..|||+||+
T Consensus 51 ~p~~~~~L~v~~G~~~g-~~~~L~-~~~~~IGR~-~~~di~l~d~~VSr~HA~I~~~~-------------~~~~l~Dlg 114 (162)
T 2kfu_A 51 LPPGSALLVVKRGPNAG-SRFLLD-QAITSAGRH-PDSDIFLDDVTVSRRHAEFRLEN-------------NEFNVVDVG 114 (162)
T ss_dssp CCSSCCEEEEEESTTCS-CEEETT-SSEEEEESC-SSSSEESTTTSSSSCSEEEEEET-------------TEEEEECCC
T ss_pred CCCccEEEEEEeCCCCC-eEEEEC-CCCEEECCC-CCCCEEECCCCcChhhEEEEEEC-------------CEEEEEECC
Confidence 34567889998875433 456674 577999999 68999999999999999999863 469999999
Q ss_pred CCCccccCCeecCCCCeeecCCCCEEEEcCceEEEEEe
Q 010574 464 STNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLL 501 (507)
Q Consensus 464 STNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl 501 (507)
|+|||||||++|. .+.|.+||+|.||...+.|.+.
T Consensus 115 S~NGT~VNg~~i~---~~~L~~GD~I~iG~~~l~f~~~ 149 (162)
T 2kfu_A 115 SLNGTYVNREPVD---SAVLANGDEVQIGKFRLVFLTG 149 (162)
T ss_dssp CSSCEEETTBCCS---EEECCSSCEEEETTEEEEEECS
T ss_pred CCCCeEECCEEcc---eEECCCCCEEEECCEEEEEEeC
Confidence 9999999999998 4699999999999987666543
No 10
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.83 E-value=3.5e-20 Score=159.67 Aligned_cols=98 Identities=24% Similarity=0.302 Sum_probs=82.1
Q ss_pred CCCCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCC
Q 010574 384 KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLG 463 (507)
Q Consensus 384 ~P~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLg 463 (507)
.|...|.|.++.+.... ..|.|. ...++|||+ ..|||+|+++.||++||.|.+.. ..|||.||+
T Consensus 7 ~p~~~~~L~v~~g~~~g-~~~~l~-~~~~~IGR~-~~~di~l~d~~vSr~Ha~i~~~~-------------~~~~l~Dl~ 70 (115)
T 2xt9_B 7 LPSGSALLVVKRGPNAG-SRFLLD-QPTTSAGRH-PDSDIFLDDVTVSRRHAEFRLEG-------------GEFQVVDVG 70 (115)
T ss_dssp -CCSCEEEEEEESTTTT-CEEEEC-SSEEEEESS-TTSSEECCSTTSCSSCEEEEEET-------------TEEEEEECS
T ss_pred CCCCcEEEEEEeCCCCC-eEEEEC-CCCEEECCC-CCCCEEeCCcccChhheEEEEEC-------------CEEEEEECC
Confidence 34567889988865433 467775 457999999 68999999999999999999863 469999999
Q ss_pred CCCccccCCeecCCCCeeecCCCCEEEEcCceEEEEE
Q 010574 464 STNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVL 500 (507)
Q Consensus 464 STNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVL 500 (507)
|+|||||||++|. .+.|.+||+|+||...+.|..
T Consensus 71 S~nGt~vng~~i~---~~~L~~gd~i~iG~~~l~~~~ 104 (115)
T 2xt9_B 71 SLNGTYVNREPVD---SAVLANGDEVQIGKFRLVFLT 104 (115)
T ss_dssp CSSCEEETTEECS---EEEECTTCEEEETTEEEEEEC
T ss_pred CCCCeEECCEEcc---eEECCCCCEEEECCEEEEEEe
Confidence 9999999999998 469999999999998766654
No 11
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.83 E-value=4.7e-20 Score=166.11 Aligned_cols=104 Identities=25% Similarity=0.317 Sum_probs=79.5
Q ss_pred eEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCcc
Q 010574 389 WRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKT 468 (507)
Q Consensus 389 wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGT 468 (507)
..|+++..+. . ..|.|..+..++|||+ ..|||+|+++.||++||+|.+......+ .....|||+|| |+|||
T Consensus 19 ~~L~~~~~~~-g-~~~~l~~~~~~~IGR~-~~~di~l~d~~VSr~Ha~I~~~~~~~~~-----~~~~~~~l~Dl-S~NGT 89 (151)
T 2jqj_A 19 GHLVNLIPGK-E-QKVEITNRNVTTIGRS-RSCDVILSEPDISTFHAEFHLLQMDVDN-----FQRNLINVIDK-SRNGT 89 (151)
T ss_dssp EEEEEEETTE-E-EEEEEECCSCEEEESS-TTSSEECCCTTCCTTSEEEEEEEEEETT-----EEEEEEEEEEC-CSSCE
T ss_pred EEEEEecCCC-c-eEEEEcCCCeEEeCCC-CCCCEEECCCCCccccCEEEEecccCCc-----CcCCEEEEEEC-CCCCe
Confidence 3455565443 2 3677765677999999 5899999999999999999984211000 01257999999 99999
Q ss_pred ccCCeecCCCCeeecCCCCEEEEcCc-eEEEEEec
Q 010574 469 YLNDNPIEPQRYYELFEKDTIKFGNS-SREYVLLH 502 (507)
Q Consensus 469 FVNGeRI~~~ryveL~dGDvIkFG~S-TreYVLl~ 502 (507)
||||++|... ++.|.+||+|.||.+ .+.|.+..
T Consensus 90 ~VNg~~i~~~-~~~L~~GD~I~lG~~~~~~f~~~~ 123 (151)
T 2jqj_A 90 FINGNRLVKK-DYILKNGDRIVFGKSCSFLFKYAS 123 (151)
T ss_dssp EETTEECCSS-CEEECSSEEEEETTTEEEEEEECS
T ss_pred EECCEEcCCC-ceECCCCCEEEECCCcEEEEEEcC
Confidence 9999999987 889999999999994 55555543
No 12
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.83 E-value=4.1e-20 Score=166.52 Aligned_cols=98 Identities=23% Similarity=0.276 Sum_probs=82.8
Q ss_pred CCCCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCC
Q 010574 384 KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLG 463 (507)
Q Consensus 384 ~P~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLg 463 (507)
.|...|.|.|+.+.... ..|.|. ...++|||+ ..|||+|+++.||++||+|.+.. ..|||.||+
T Consensus 42 ~p~~~~~L~v~~G~~~g-~~~~L~-~~~~~IGR~-~~~di~l~d~~VSr~Ha~I~~~~-------------~~~~l~Dlg 105 (143)
T 2kb3_A 42 LPAGSALLVVKRGPNAG-ARFLLD-QPTTTAGRH-PESDIFLDDVTVSRRHAEFRINE-------------GEFEVVDVG 105 (143)
T ss_dssp CSSSCEEEEEEESTTTT-CEEEEC-SSEEEESSC-TTCSBCCCCSSCCSSSEEEEEET-------------TEEEEEESC
T ss_pred CCCccEEEEEEeCCCCC-eEEEeC-CCCeeccCC-CCCCEEeCCCCcChhhEEEEEEC-------------CEEEEEECC
Confidence 35567899999875443 467774 467999999 68999999999999999999853 469999999
Q ss_pred CCCccccCCeecCCCCeeecCCCCEEEEcCceEEEEE
Q 010574 464 STNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVL 500 (507)
Q Consensus 464 STNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVL 500 (507)
|+|||||||++|. .+.|.+||+|+||...+.|..
T Consensus 106 S~NGT~VNg~~i~---~~~L~~GD~I~iG~~~l~f~~ 139 (143)
T 2kb3_A 106 SLNGTYVNREPRN---AQVMQTGDEIQIGKFRLVFLA 139 (143)
T ss_dssp CSSCCEETTEECS---EEECCTTEEEEETTEEEEEEE
T ss_pred CcCCeEECCEEcc---eEECCCCCEEEECCEEEEEEe
Confidence 9999999999998 469999999999998766654
No 13
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.82 E-value=3.5e-20 Score=164.88 Aligned_cols=104 Identities=22% Similarity=0.278 Sum_probs=86.0
Q ss_pred CceEEEEEeCCeeecceEEeccc----ceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeC
Q 010574 387 VRWRLYVFKAGEMLKEPLYIHRQ----SCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDL 462 (507)
Q Consensus 387 ~~wrL~VfKgGe~l~e~i~L~~q----s~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDL 462 (507)
..|.|.|+.+.... ..|.|... ..++|||+ ..|||+|+++.||++||+|.+... ...|||+||
T Consensus 6 ~~~~L~v~~G~~~g-~~~~l~~~~~~~~~~~IGR~-~~~di~l~d~~VSr~Ha~i~~~~~-----------~~~~~l~Dl 72 (139)
T 1mzk_A 6 SWLFLEVIAGPAIG-LQHAVNSTSSSKLPVKLGRV-SPSDLALKDSEVSGKHAQITWNST-----------KFKWELVDM 72 (139)
T ss_dssp EEEEEEECSSTTCS-CEEEECTTCSTTCSEEEESS-SSCSEECCCTTSSSEEEEEEEETT-----------TTEEEEEET
T ss_pred CeEEEEEEeCCCCC-eEEEecCCCCccceEEeeCC-CCCCEEeCCCCCChHHcEEEEECC-----------CCEEEEEEC
Confidence 45788888765443 46777653 36999999 589999999999999999998741 136999999
Q ss_pred CCCCccccCCeecCC--------CCeeecCCCCEEEEcCceEEEEEecC
Q 010574 463 GSTNKTYLNDNPIEP--------QRYYELFEKDTIKFGNSSREYVLLHE 503 (507)
Q Consensus 463 gSTNGTFVNGeRI~~--------~ryveL~dGDvIkFG~STreYVLl~e 503 (507)
+|+|||||||++|.. ..++.|.+||+|+||...+.|+.+..
T Consensus 73 gS~NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~iG~~~~~~~~~~~ 121 (139)
T 1mzk_A 73 GSLNGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVRISS 121 (139)
T ss_dssp TCSSCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSSSCEEEEEEEE
T ss_pred CCCCCEEECCEECcCcccccccCCceEECCCCCEEEECCEEEEEEEcCC
Confidence 999999999999984 56789999999999999988876653
No 14
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.81 E-value=1.5e-19 Score=160.16 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=79.3
Q ss_pred CceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeC----
Q 010574 387 VRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDL---- 462 (507)
Q Consensus 387 ~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDL---- 462 (507)
..+.|+++.++... ..|.|. +..|+|||+ ..|||+|+++.||++||.|.+.... +| ...|||+||
T Consensus 9 ~~~~~lvv~~~~~~-~~~~l~-~~~~~IGR~-~~~di~l~d~~VSr~Ha~I~~~~~~----~g----~~~~~l~Dl~~~~ 77 (131)
T 3hx1_A 9 LQEHILIILDDAGR-REVLLT-ETFYTIGRS-PRADIRIKSQFVSRIHAVLVRKSSD----DV----QAAYRIIDGDEDG 77 (131)
T ss_dssp CCEEEEEEEETTEE-EEEEEC-SSEEEEESS-TTSSEECCCSSSCTTCEEEEEC--------------CCEEEEESCTTS
T ss_pred CcceEEEEECCCCc-EEEEEC-CCCEEECCC-CCCCEEECCCCcChhheEEEEEccC----CC----ceEEEEEECCCCC
Confidence 34566666655443 356774 467999999 5799999999999999999986311 11 135999999
Q ss_pred -CCCCccccCCeecCCCCeeecCCCCEEEEcCceEEEEEecC
Q 010574 463 -GSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHE 503 (507)
Q Consensus 463 -gSTNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~e 503 (507)
+|+|||||||++|.. +.|.+||+|.||...+.|+.+..
T Consensus 78 ~~S~NGT~vNg~~i~~---~~L~~GD~I~iG~~~~~~~~~~~ 116 (131)
T 3hx1_A 78 QSSVNGLMINGKKVQE---HIIQTGDEIVMGPQVSVRYEYRR 116 (131)
T ss_dssp CCCSSCEEETTEEESE---EECCTTCEEECSTTCEEEEEEEC
T ss_pred CCCCCceEECCEEeEe---EECCCCCEEEECCEEEEEEEEec
Confidence 799999999999985 79999999999999876655543
No 15
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.81 E-value=1.6e-19 Score=151.51 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=71.6
Q ss_pred ceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCee
Q 010574 402 EPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYY 481 (507)
Q Consensus 402 e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryv 481 (507)
..|.|.. ..++|||+ ..|||+|+++.||++||.|.+.. ..|||+||+|+|||||||++|. .+
T Consensus 16 ~~~~l~~-~~~~IGR~-~~~di~l~d~~vSr~Ha~i~~~~-------------~~~~l~Dl~S~nGt~vng~~i~---~~ 77 (100)
T 3po8_A 16 RTYQLRE-GSNIIGRG-QDAQFRLPDTGVSRRHLEIRWDG-------------QVALLADLNSTNGTTVNNAPVQ---EW 77 (100)
T ss_dssp CEEECCS-EEEEEESS-TTCSEECCCTTSCSSCEEEEECS-------------SCEEEEECSCSSCCEETTEECS---EE
T ss_pred cEEEECC-CCEEEeCC-CCCCEECCCCCcChhhCEEEEeC-------------CEEEEEECCCCCCEEECCEECc---eE
Confidence 4577744 56999998 69999999999999999999853 4599999999999999999997 46
Q ss_pred ecCCCCEEEEcCceEEEEEe
Q 010574 482 ELFEKDTIKFGNSSREYVLL 501 (507)
Q Consensus 482 eL~dGDvIkFG~STreYVLl 501 (507)
.|.+||+|.||...+.|.+.
T Consensus 78 ~L~~gd~i~iG~~~~~~~~~ 97 (100)
T 3po8_A 78 QLADGDVIRLGHSEIIVRMH 97 (100)
T ss_dssp ECCTTCEEEETTEEEEEEEE
T ss_pred ECCCCCEEEECCEEEEEEEE
Confidence 99999999999988777664
No 16
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.80 E-value=8.9e-20 Score=166.93 Aligned_cols=114 Identities=20% Similarity=0.240 Sum_probs=90.5
Q ss_pred ceecccCCCCCCCCCCceEEEEEeCCeeecceEEeccc----------ceeeecccCccCceecCCC-CcCccceEEEEe
Q 010574 372 VTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQ----------SCYLFGRERRVADIPTDHP-SCSKQHAVIQFR 440 (507)
Q Consensus 372 VtLkysePpeAr~P~~~wrL~VfKgGe~l~e~i~L~~q----------s~ylIGRdr~~cDIvLdhP-SVSRqHAvIqfR 440 (507)
+..+|+ .++..+...|.|+|+.+.... ..|.|... ..|+|||+ ..|||+|+++ .||++||+|.+.
T Consensus 19 ~i~~~~--~e~~~~~~~~~L~v~~G~~~g-~~~~l~~~~v~~~~~~~~~~~~IGR~-~~~di~l~d~~~vSr~Ha~I~~~ 94 (164)
T 1g3g_A 19 LIEKFS--QEQIGENIVCRVICTTGQIPI-RDLSADISQVLKEKRSIKKVWTFGRN-PACDYHLGNISRLSNKHFQILLG 94 (164)
T ss_dssp HHHHHH--CCCCCSSCCEEEECSSSSSCC-EEECCCHHHHHHCSSSCCEEEEEESS-SSSSEECCCCTTTTSSCEEEEEC
T ss_pred eeeecc--ccccCCCccEEEEEecCCCCC-eEEEeccccccccccccCCcEEECCC-CCCCEEeCCcCCcChhHEEEEEC
Confidence 344555 355667778999999876544 45666532 37999999 5799999998 699999999985
Q ss_pred cccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCeeecCCCCEEEEcCc----eEEEEEec
Q 010574 441 QVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNS----SREYVLLH 502 (507)
Q Consensus 441 ~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~S----TreYVLl~ 502 (507)
. .+.|||.|| |+|||||||++|....++.|.+||+|.||.+ ...|+|.+
T Consensus 95 ~------------~g~~~l~Dl-S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~ 147 (164)
T 1g3g_A 95 E------------DGNLLLNDI-STNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFI 147 (164)
T ss_dssp S------------TTCEEEEEC-CSSCEEETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEE
T ss_pred C------------CCCEEEEEC-CCCCeEECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEe
Confidence 2 146999999 9999999999999888899999999999996 34566654
No 17
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.80 E-value=2e-19 Score=159.86 Aligned_cols=100 Identities=26% Similarity=0.297 Sum_probs=81.1
Q ss_pred CCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCC----cCccceEEEEecccccCCCCCCCCcceeEEEe
Q 010574 386 SVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPS----CSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMD 461 (507)
Q Consensus 386 ~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPS----VSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiD 461 (507)
...|.|... |... ..|.|.....++|||+ ..|||+|+++. ||++||+|.+.. .+.|||+|
T Consensus 7 ~~~w~l~~~--G~~~-~~~~l~~~~~~~IGR~-~~~di~l~~~~~~~~VSr~Ha~i~~~~------------~g~~~l~D 70 (138)
T 2pie_A 7 GRSWCLRRV--GMSA-GWLLLEDGCEVTVGRG-FGVTYQLVSKICPLMISRNHCVLKQNP------------EGQWTIMD 70 (138)
T ss_dssp CEEEEEEET--TCSS-CBEEECTTCCEEEESS-SSSSEECCCSSCTTSSCSSCEEEEECT------------TSCEEEEE
T ss_pred CccEEEEEe--CCCC-CEEEecCCCeEEECCC-CCCCEEeCCCCcCCCCChhHeEEEEcC------------CCcEEEEE
Confidence 445765543 3333 3578875677999999 69999999998 999999999842 14699999
Q ss_pred CCCCCccccCCeecCCCCeeecCCCCEEEEcCc-------eEEEEEe
Q 010574 462 LGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNS-------SREYVLL 501 (507)
Q Consensus 462 LgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~S-------TreYVLl 501 (507)
|+|+|||||||++|....++.|.+||+|.||.. .++|.++
T Consensus 71 l~S~NGT~vNg~~l~~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~ 117 (138)
T 2pie_A 71 NKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 117 (138)
T ss_dssp CSCSSCEEETTEECCTTCCEECCTTCEEEESCCCTTCSSCSEEEEEE
T ss_pred CCCCCCeEECCEEcCCCCcEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 999999999999999988999999999999982 4566554
No 18
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.80 E-value=7e-20 Score=164.19 Aligned_cols=92 Identities=26% Similarity=0.308 Sum_probs=77.9
Q ss_pred CCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCC----cCccceEEEEecccccCCCCCCCCcceeEEEe
Q 010574 386 SVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPS----CSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMD 461 (507)
Q Consensus 386 ~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPS----VSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiD 461 (507)
...|.|. ..|... ..+.|.....++|||+ ..|||+|+++. ||++||+|.+.. .+.|||+|
T Consensus 15 ~~~w~L~--~~G~~~-~~~~l~~~~~~~IGR~-~~~di~l~~~~~~~~VSr~Ha~i~~~~------------~g~~~l~D 78 (145)
T 2csw_A 15 GRSWCLR--RVGMSA-GWLLLEDGCEVTVGRG-FGVTYQLVSKICPLMISRNHCVLKQNP------------EGQWTIMD 78 (145)
T ss_dssp SEEEEEC--CTTCSC-CBEECCTTCCEEEESS-TTSSEECCCSSCGGGSCTTCEEEEECT------------TSCEEEEB
T ss_pred CccEEEE--EeCCCC-CeEEeCCCCcEEECCC-CCCCEEECCCCcCCCCChhHeEEEEcC------------CCeEEEEE
Confidence 4568877 334333 3577767778999999 59999999998 999999999852 14699999
Q ss_pred CCCCCccccCCeecCCCCeeecCCCCEEEEcC
Q 010574 462 LGSTNKTYLNDNPIEPQRYYELFEKDTIKFGN 493 (507)
Q Consensus 462 LgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~ 493 (507)
|+|+|||||||++|.+..++.|.+||+|.||.
T Consensus 79 l~S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~ 110 (145)
T 2csw_A 79 NKSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 110 (145)
T ss_dssp SSCSSCEEESSCBCCBTCCEECCSSCCEEESC
T ss_pred CCCCCCeEECCEECCCCccEECCCCCEEEECC
Confidence 99999999999999998889999999999998
No 19
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.78 E-value=6.2e-19 Score=158.67 Aligned_cols=102 Identities=25% Similarity=0.375 Sum_probs=79.2
Q ss_pred Cce-EEEEEeCCeeecceEEecccceeeecccCccCceecCCCC---------cCccceEEEEecccccCCCCCCCCcce
Q 010574 387 VRW-RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPS---------CSKQHAVIQFRQVEKEQPDGMLSKEVR 456 (507)
Q Consensus 387 ~~w-rL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPS---------VSRqHAvIqfR~~~~~~~dGd~~~~~r 456 (507)
..| .|+++.++.. .|.|. ...++|||+ ..|||+|+++. ||++||.|.+.... .....
T Consensus 28 ~~w~~L~~~~~~~~---~i~L~-~~~~~IGR~-~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~--------~~~~~ 94 (149)
T 1gxc_A 28 APWARLWALQDGFA---NLECV-NDNYWFGRD-KSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGP--------KNSYI 94 (149)
T ss_dssp -CCEEEEECSTTCC---CEEEC-SSEEEEESS-TTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECT--------TSSEE
T ss_pred CeeEEEEEcCCCCc---eEEEC-CCCEEecCC-CCCCEEECCccccccccCCcCchhheEEEEECCC--------CceeE
Confidence 345 5555544322 36664 467999999 58999999995 99999999987521 01247
Q ss_pred eEEEeCCCCCccccCCeecCCCCeeecCCCCEEEEcCce-EEEEEec
Q 010574 457 PYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSS-REYVLLH 502 (507)
Q Consensus 457 ~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~ST-reYVLl~ 502 (507)
|||.|+ |+|||||||++|.+..++.|.+||+|.||... ..|+|+.
T Consensus 95 ~~i~D~-StNGT~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d 140 (149)
T 1gxc_A 95 AYIEDH-SGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFD 140 (149)
T ss_dssp EEEEEC-CSSCEEETTEECCTTCEEECCTTEEEEESSTTCEEEEEEE
T ss_pred EEEEEC-CCCCeEECCEECCCCCeEECCCCCEEEECCCCCeEEEEEE
Confidence 999997 99999999999999889999999999999964 4566654
No 20
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.78 E-value=3.9e-19 Score=162.02 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=79.8
Q ss_pred ceEEeccc-ceeeecccCccCceecCCCCcCccceEEEEecccccC--CCCCCCCcceeEEEeCCCCCccccCCeecCCC
Q 010574 402 EPLYIHRQ-SCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQ--PDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQ 478 (507)
Q Consensus 402 e~i~L~~q-s~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~--~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ 478 (507)
..|+|... ..|+|||+ ..|||+|+++.||++||+|.+....... ......+...|||+|| |+|||||||++|...
T Consensus 18 ~~i~L~~~~~~~~IGR~-~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~Dl-StNGT~VNg~ri~~~ 95 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRS-EDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNRMIQG 95 (158)
T ss_dssp CCEEETTSCSCEEEESS-TTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC-STTCCEETTEECCSS
T ss_pred eEEEEcCCCceEEECCC-CCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEEC-CcCCeEECCEEcCCC
Confidence 46777543 35999998 6899999999999999999986421000 0000111257999999 999999999999998
Q ss_pred CeeecCCCCEEEE-----cCceEEEEEecCCC
Q 010574 479 RYYELFEKDTIKF-----GNSSREYVLLHENS 505 (507)
Q Consensus 479 ryveL~dGDvIkF-----G~STreYVLl~e~s 505 (507)
.+++|.+||+|+| |...+.|.+.....
T Consensus 96 ~~~~L~~GD~I~l~~d~~G~~~l~f~~~~~~~ 127 (158)
T 1dmz_A 96 TKFLLQDGDEIKIIWDKNNKFVIGFKVEINDT 127 (158)
T ss_dssp EEEECCSSCCEESCCCTTTTCCCCEEEECSCC
T ss_pred ceEEcCCCCEEEEeecCCCCEEEEEEEEeCCC
Confidence 8999999999999 99998898876543
No 21
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.77 E-value=9.9e-19 Score=150.07 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=77.0
Q ss_pred EEEEEeCCeeecceEEecccceeeecccCccCceecCC-CCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCcc
Q 010574 390 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDH-PSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKT 468 (507)
Q Consensus 390 rL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdh-PSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGT 468 (507)
+|+++.++... ..|.|. ...++|||+ ..|||+|++ +.||++||.|.+... .+.|||.| +|+|||
T Consensus 6 ~L~~~~~~~~~-~~~~l~-~~~~~iGR~-~~~di~l~~~~~vSr~Ha~i~~~~~-----------~~~~~l~D-~S~NGt 70 (116)
T 1lgp_A 6 RLLRLGAEEGE-PHVLLR-KREWTIGRR-RGCDLSFPSNKLVSGDHCRIVVDEK-----------SGQVTLED-TSTSGT 70 (116)
T ss_dssp EECCTTCCSSS-CCEEEC-SSEEEEESS-TTSSEECTTCTTSCTTCEEEEECTT-----------TCCEEEEE-CSSSCC
T ss_pred EEEEeCCCCCc-cEEEEC-CCCEEECCC-CCCCEEeCCCCCCChhHeEEEEECC-----------CCeEEEEE-CCcCCc
Confidence 45555433222 356775 567999999 589999986 599999999998521 14699999 999999
Q ss_pred ccCCeecCCCCeeecCCCCEEEEcCc------eEEEEEec
Q 010574 469 YLNDNPIEPQRYYELFEKDTIKFGNS------SREYVLLH 502 (507)
Q Consensus 469 FVNGeRI~~~ryveL~dGDvIkFG~S------TreYVLl~ 502 (507)
||||++|.+..++.|.+||+|.||.. ...|+|..
T Consensus 71 ~vng~~l~~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~ 110 (116)
T 1lgp_A 71 VINKLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLYES 110 (116)
T ss_dssp CCCCCCCCCSSCCCCCTTCEEEEECCSSCGGGCEEEECCC
T ss_pred EECCEEcCCCCcEECCCCCEEEEeccCCCCCceEEEEEEc
Confidence 99999999888899999999999986 34566544
No 22
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.75 E-value=2.3e-18 Score=158.39 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=69.1
Q ss_pred ceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCee
Q 010574 402 EPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYY 481 (507)
Q Consensus 402 e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryv 481 (507)
..|.|.. ..++|||+ ..|||+|+++.||++||+|.+.. ..|+|+||+|+|||||||++|. .+
T Consensus 78 ~~~~L~~-~~~~IGR~-~~~dI~L~d~~VSr~HA~I~~~~-------------~~~~l~DlgStNGT~VNG~~i~---~~ 139 (157)
T 3oun_A 78 RTYQLRE-GSNIIGRG-QDAQFRLPDTGVSRRHLEIRWDG-------------QVALLADLNSTNGTTVNNAPVQ---EW 139 (157)
T ss_dssp CEEECCS-EEEEEESS-TTCSEECCCTTSCTTCEEEEECS-------------SCEEEEECSCSSCCEETTEECS---EE
T ss_pred eEEEECC-CcEEEEeC-CCCCEEeCCCCcChhHEEEEEEC-------------CEEEEEECCCCCCeEECCEECc---eE
Confidence 4577754 56999998 69999999999999999999853 3599999999999999999997 46
Q ss_pred ecCCCCEEEEcCceEEE
Q 010574 482 ELFEKDTIKFGNSSREY 498 (507)
Q Consensus 482 eL~dGDvIkFG~STreY 498 (507)
+|.+||+|+||...+.|
T Consensus 140 ~L~~GD~I~lG~~~l~f 156 (157)
T 3oun_A 140 QLADGDVIRLGHSEIIV 156 (157)
T ss_dssp ECCTTCEEEETTEEEEE
T ss_pred ECCCCCEEEECCEEEEE
Confidence 99999999999987555
No 23
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.75 E-value=9.2e-19 Score=163.61 Aligned_cols=101 Identities=18% Similarity=0.196 Sum_probs=78.2
Q ss_pred ceEEeccc-ceeeecccCccCceecCCCCcCccceEEEEecccccC-CC-CCCCCcceeEEEeCCCCCccccCCeecCCC
Q 010574 402 EPLYIHRQ-SCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQ-PD-GMLSKEVRPYIMDLGSTNKTYLNDNPIEPQ 478 (507)
Q Consensus 402 e~i~L~~q-s~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~-~d-Gd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ 478 (507)
..|+|... ..|+|||+ ..|||+|+++.||++||.|.+....... .+ ....+...|||+|| |+|||||||++|...
T Consensus 42 ~~i~L~~~~~~~~IGR~-~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~Dl-StNGT~VNg~ri~~~ 119 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRS-EDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNRMIQG 119 (182)
T ss_dssp SCCCBTTCCSSEEESSS-TTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCC-SSSCCEETTEECCSS
T ss_pred eEEEEcCCCceEEECCC-CCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEEC-CcCCeEECCEEcCCC
Confidence 35666442 34999999 6999999999999999999986421000 00 00011257999999 999999999999998
Q ss_pred CeeecCCCCEEEE-----cCceEEEEEecCC
Q 010574 479 RYYELFEKDTIKF-----GNSSREYVLLHEN 504 (507)
Q Consensus 479 ryveL~dGDvIkF-----G~STreYVLl~e~ 504 (507)
.++.|.+||+|.| |...+.|.+....
T Consensus 120 ~~~~L~~GD~I~l~~d~~G~~~l~f~~~~~~ 150 (182)
T 1qu5_A 120 TKFLLQDGDEIKIIWDKNNKFVIGFKVEIND 150 (182)
T ss_dssp EEEECCTTBCCEEEEEGGGTEEEECCEEESC
T ss_pred cceEcCCCCEEEEEEcCCCCEEEEEEEEeCC
Confidence 8999999999999 9999888876644
No 24
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.74 E-value=6.8e-18 Score=146.56 Aligned_cols=90 Identities=16% Similarity=0.073 Sum_probs=72.0
Q ss_pred eEEEEEeCCeee----cceEEecccceeeeccc-CccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCC
Q 010574 389 WRLYVFKAGEML----KEPLYIHRQSCYLFGRE-RRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLG 463 (507)
Q Consensus 389 wrL~VfKgGe~l----~e~i~L~~qs~ylIGRd-r~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLg 463 (507)
.+|+++.++... ...|.|. ...++|||+ ...|||+|+++.||++||.|.+.. ..|+|.||+
T Consensus 12 p~Lv~l~~d~~~s~~~~~~~~L~-~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~~-------------~~~~l~dl~ 77 (120)
T 1wln_A 12 PYLVELSPDGSDSRDKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMD-------------GVVTVTPRS 77 (120)
T ss_dssp CEEEEECSSSCCCSSCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESS-------------SCEEEEESC
T ss_pred CEEEEeCCChhhccCccEEEEEC-CCCEEECCCCCCCCcEEECCCCCchhheEEEEcC-------------CEEEEEECC
Confidence 367676643221 2356664 456899973 268999999999999999999753 469999999
Q ss_pred CCCccccCCeecCCCCeeecCCCCEEEEcCc
Q 010574 464 STNKTYLNDNPIEPQRYYELFEKDTIKFGNS 494 (507)
Q Consensus 464 STNGTFVNGeRI~~~ryveL~dGDvIkFG~S 494 (507)
|+|||||||++|. ..+.|.+||+|.||..
T Consensus 78 S~ngt~vNg~~i~--~~~~L~~GD~I~iG~~ 106 (120)
T 1wln_A 78 MDAETYVDGQRIS--ETTMLQSGMRLQFGTS 106 (120)
T ss_dssp SSSCEEETSCBCS--SCEEECTTCEEEETTT
T ss_pred CCCCEEECCEEcC--CCEECCCCCEEEECCc
Confidence 9999999999998 4579999999999994
No 25
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.73 E-value=1.1e-17 Score=146.59 Aligned_cols=79 Identities=25% Similarity=0.334 Sum_probs=67.8
Q ss_pred ceeeecccCccCceecCCC-CcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCeeecCCCCE
Q 010574 410 SCYLFGRERRVADIPTDHP-SCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDT 488 (507)
Q Consensus 410 s~ylIGRdr~~cDIvLdhP-SVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryveL~dGDv 488 (507)
..++|||+ ..|||+|+++ .||+.||.|.+.. .+.|||.|| |+|||||||++|.+..++.|.+||+
T Consensus 36 ~~~~IGR~-~~~di~l~~~~~vSr~Ha~i~~~~------------~g~~~l~Dl-S~NGT~vNg~~l~~~~~~~L~~Gd~ 101 (127)
T 1g6g_A 36 KVWTFGRN-PACDYHLGNISRLSNKHFQILLGE------------DGNLLLNDI-STNGTWLNGQKVEKNSNQLLSQGDE 101 (127)
T ss_dssp EEEEEESS-TTSSEECCSCTTSCSSCEEEEECT------------TSCEEEEEC-CSSCCEETTEECCTTCCEECCTTCE
T ss_pred CCEEECCC-CCCCEEeCCCCCCChhHeEEEECC------------CCcEEEEEC-CcCCeEECCEEcCCCCeEEcCCCCE
Confidence 36999999 5799999998 5999999999852 146999999 9999999999999988899999999
Q ss_pred EEEcCce----EEEEEec
Q 010574 489 IKFGNSS----REYVLLH 502 (507)
Q Consensus 489 IkFG~ST----reYVLl~ 502 (507)
|.||... ..|++.+
T Consensus 102 I~lG~~~~~~~i~f~~~~ 119 (127)
T 1g6g_A 102 ITVGVGVESDILSLVIFI 119 (127)
T ss_dssp EEECTTSGGGCEEEEEEE
T ss_pred EEECCCccCceEEEEEEe
Confidence 9999864 3455544
No 26
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.72 E-value=1.9e-17 Score=150.51 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=76.1
Q ss_pred EEEEEeCCeee-cceEEecccceeeecccC--ccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCC
Q 010574 390 RLYVFKAGEML-KEPLYIHRQSCYLFGRER--RVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTN 466 (507)
Q Consensus 390 rL~VfKgGe~l-~e~i~L~~qs~ylIGRdr--~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTN 466 (507)
+|+-+..+... .-.+|+.....++|||.. ..|||+|+++.||++||+|.+.... ....++++|++|+|
T Consensus 40 hLvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~---------~~~~~~~~d~~S~n 110 (154)
T 4ejq_A 40 HLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRG---------GSEAVVTLEPCEGA 110 (154)
T ss_dssp EEEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTT---------SSSCEEEEEECTTC
T ss_pred eEEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCC---------CceeEEEEecCCCC
Confidence 55555443222 124555566789999963 2699999999999999999986421 12358999999999
Q ss_pred ccccCCeecCCCCeeecCCCCEEEEcCceEEEEEec
Q 010574 467 KTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLH 502 (507)
Q Consensus 467 GTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~ 502 (507)
||||||++|. .++.|++||+|.||.+. .|+|.+
T Consensus 111 gt~VNG~~i~--~~~~L~~GD~I~~G~~~-~Frf~~ 143 (154)
T 4ejq_A 111 DTYVNGKKVT--EPSILRSGNRIIMGKSH-VFRFNH 143 (154)
T ss_dssp CEEETTEECC--SCEECCTTCEEEETTTE-EEEEEC
T ss_pred ceEECCEEcC--CceECCCCCEEEECCcE-EEEEcC
Confidence 9999999996 35789999999999865 366654
No 27
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.71 E-value=3.6e-17 Score=165.36 Aligned_cols=85 Identities=22% Similarity=0.226 Sum_probs=73.6
Q ss_pred eEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCeee
Q 010574 403 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYE 482 (507)
Q Consensus 403 ~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryve 482 (507)
.|.|.. ..++|||+ ..|||+|+++.||++||.|.+.. +.|||.||+|+|||||||++|. .++.
T Consensus 300 ~~~l~~-~~~~iGR~-~~~di~l~~~~vSr~Ha~i~~~~-------------~~~~l~Dl~S~nGt~vng~~i~--~~~~ 362 (388)
T 2ff4_A 300 GYPLQA-AATRIGRL-HDNDIVLDSANVSRHHAVIVDTG-------------TNYVINDLRSSNGVHVQHERIR--SAVT 362 (388)
T ss_dssp EEECCS-SEEEEESS-TTSSEECCCTTSCTTCEEEEECS-------------SCEEEEECSCSSCCEETTEECS--SEEE
T ss_pred EEEECC-CCEEEecC-CCCeEEECCCccChhHeEEEEEC-------------CEEEEEECCCCCCeEECCEECC--CceE
Confidence 567754 57999998 68999999999999999999853 4699999999999999999995 4789
Q ss_pred cCCCCEEEEcCceEEEEEecCC
Q 010574 483 LFEKDTIKFGNSSREYVLLHEN 504 (507)
Q Consensus 483 L~dGDvIkFG~STreYVLl~e~ 504 (507)
|.+||+|+||...+.|.+..+.
T Consensus 363 L~~gd~i~~G~~~~~~~~~~~~ 384 (388)
T 2ff4_A 363 LNDGDHIRICDHEFTFQISAGT 384 (388)
T ss_dssp ECTTCEEEETTEEEEEECSCCC
T ss_pred CCCCCEEEECCEEEEEEeCCCC
Confidence 9999999999988777765543
No 28
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.69 E-value=2e-17 Score=167.02 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=82.5
Q ss_pred eEEEEEeCCeeecceEEecccceeeecccCc--cCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCC
Q 010574 389 WRLYVFKAGEMLKEPLYIHRQSCYLFGRERR--VADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTN 466 (507)
Q Consensus 389 wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~--~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTN 466 (507)
|.|..- ++...+..++|.... |+|||... .++|+++|++|||+||+|++......+ |.......++|+||+|+|
T Consensus 2 WiL~~~-~d~~~Gkr~~L~pg~-YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~d--g~~~~~~~l~I~DLgSkn 77 (325)
T 3huf_A 2 WIIEAE-GDILKGKSRILFPGT-YIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKD--YFTGGPCEFEVKDLDTKF 77 (325)
T ss_dssp EEEEES-TTTTTTCCEEECSEE-EEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHH--HHHCCCCCEEEEECSCSS
T ss_pred cEEecc-CccCCCeEEEecCCe-EEECCCCCccCceeecCCCCccccceEEEEecccccc--cccCCcceEEEEECCCCC
Confidence 777762 211122467776655 99999842 124799999999999999997542111 101123469999999999
Q ss_pred ccccCCeecCCCCeeecCCCCEEEEcCceEEEEEecCCC
Q 010574 467 KTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHENS 505 (507)
Q Consensus 467 GTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~e~s 505 (507)
||||||++|....+..+.+||.|+||.....|.|.+.+.
T Consensus 78 GTfVNGerI~~~~~~L~~dgd~I~fG~~~~~fRl~W~P~ 116 (325)
T 3huf_A 78 GTKVNEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRSM 116 (325)
T ss_dssp CEEETTEECCTTCEEECSSEEEEEETTCSSCEEEEECCC
T ss_pred CEEECCEECCCceeeecCCCCEEEecCCcceEEEEEeee
Confidence 999999999987775556899999999888888877653
No 29
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.61 E-value=1.6e-15 Score=134.45 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=72.1
Q ss_pred EEEEEeCCeeecc--eEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCc
Q 010574 390 RLYVFKAGEMLKE--PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNK 467 (507)
Q Consensus 390 rL~VfKgGe~l~e--~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNG 467 (507)
+|+.+.++....+ .|+|.. .++|||. ..|||+|+++.||++||+|.+.. .+.++|+||+ +||
T Consensus 28 hLvnLn~Dp~~s~~l~y~L~~--~t~IGR~-~~~DI~L~~~~Vs~~Ha~I~~~~------------~g~~~l~dl~-~ng 91 (124)
T 3fm8_A 28 FLVNLNADPALNELLVYYLKE--HTLIGSA-NSQDIQLCGMGILPEHCIIDITS------------EGQVMLTPQK-NTR 91 (124)
T ss_dssp EEEETTCCTTSSCCCEEECCS--EEEEESS-TTCSEECCSTTCCSSCEEEEECT------------TSCEEEEECT-TCC
T ss_pred EEEEeCCCCccCceEEEECCC--CeEECCC-CCCCEEECCCCeecceEEEEECC------------CCeEEEEECC-CCC
Confidence 6776665433222 344533 4899998 68999999999999999998742 1458999995 899
Q ss_pred cccCCeecCCCCeeecCCCCEEEEcCceEEEEEec
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLH 502 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~ 502 (507)
|||||++|. .++.|.+||+|.||...+ |.|.+
T Consensus 92 t~VNG~~V~--~~~~L~~GD~I~lG~~~~-FrFn~ 123 (124)
T 3fm8_A 92 TFVNGSSVS--SPIQLHHGDRILWGNNHF-FRLNL 123 (124)
T ss_dssp EEETTEECC--SCEEECTTCEEEETTTEE-EEEEC
T ss_pred EEECCEEcC--CcEECCCCCEEEECCCeE-EEEEC
Confidence 999999998 357999999999998652 55543
No 30
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.37 E-value=1.6e-12 Score=112.64 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=66.3
Q ss_pred eEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCcc-ccCCeecCCCCee
Q 010574 403 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKT-YLNDNPIEPQRYY 481 (507)
Q Consensus 403 ~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGT-FVNGeRI~~~ryv 481 (507)
++.|.....|.|||+ +.|+++|++|+||+.||.|.... ...||. . |+||| ||||+++ ..+
T Consensus 14 ~v~l~~~~~~rIGR~-~~~~l~LddpsVs~~HAti~~~~-------------~G~~~l-~-S~nGtVFVNGqrv---~~~ 74 (102)
T 3uv0_A 14 AILLKADTIYRIGRQ-KGLEISIADESMELAHATACILR-------------RGVVRL-A-ALVGKIFVNDQEE---TVV 74 (102)
T ss_dssp CEECCTTCCEEEESS-TTSTEECCCTTSCTTCEEEEEEE-------------TTEEEE-E-ESSSCEEETTEEE---SEE
T ss_pred cEEeecCcEEEEcCC-CCCcEEECCcccccceEEEEecC-------------CceEEE-E-eccCcEEECCEEe---eeE
Confidence 356777788999999 79999999999999999998754 125663 3 99995 9999999 367
Q ss_pred ecCCCCE------EEEcCceEEEEEe
Q 010574 482 ELFEKDT------IKFGNSSREYVLL 501 (507)
Q Consensus 482 eL~dGDv------IkFG~STreYVLl 501 (507)
.|..||. |.||+..-.+.++
T Consensus 75 ~I~~gDtI~g~v~lrFGnvea~l~~~ 100 (102)
T 3uv0_A 75 DIGMENAVAGKVKLRFGNVEARLEFG 100 (102)
T ss_dssp EECGGGCBTTEEEEEETTEEEEEEEC
T ss_pred EccCCcccccEEEEEecCEEEEEEec
Confidence 9999999 9999988655553
No 31
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.37 E-value=1.5e-12 Score=130.54 Aligned_cols=94 Identities=28% Similarity=0.390 Sum_probs=73.9
Q ss_pred e-EEEEEeCCeeecceEEecccceeeecccCccCceecCCCCc---------CccceEEEEecccccCCCCCCCCcceeE
Q 010574 389 W-RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSC---------SKQHAVIQFRQVEKEQPDGMLSKEVRPY 458 (507)
Q Consensus 389 w-rL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSV---------SRqHAvIqfR~~~~~~~dGd~~~~~r~y 458 (507)
| .|+++.++.. .+.|. ...|+|||+ ..|||+|++|.| |+.||.|.+... .. +...||
T Consensus 10 ~g~l~~~~~~~~---~~~l~-~~~~~iGR~-~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~----~~----~~~~~~ 76 (419)
T 3i6u_A 10 WARLWALQDGFA---NLECV-NDNYWFGRD-KSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVG----PK----NSYIAY 76 (419)
T ss_dssp SEEEEECSSSSC---CEEEC-SSEEEEESS-TTSSEETTCTTGGGCSGGGGSCTTCEEEECCEE----TT----TEECCE
T ss_pred ceEeeecCCCCC---ceEec-CCCEEecCC-CccCEEECCcccccccccccccccceEEEEEcC----CC----CceEEE
Confidence 5 5555555432 36664 467999999 689999999976 999999975421 11 123599
Q ss_pred EEeCCCCCccccCCeecCCCCeeecCCCCEEEEcCceE
Q 010574 459 IMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSR 496 (507)
Q Consensus 459 LiDLgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~STr 496 (507)
|.| +|+|||||||..|.......|.+||.|+||.+..
T Consensus 77 i~D-~S~nGt~vn~~~~~~~~~~~l~~~d~i~~~~~~~ 113 (419)
T 3i6u_A 77 IED-HSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRN 113 (419)
T ss_dssp EEE-CCSSCEEETTEECCTTCEEECCTTEEEEESSTTC
T ss_pred EEE-CCcCCceECcccccCCCcccCCCCCEeeeecccc
Confidence 999 7999999999999999899999999999998754
No 32
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=99.28 E-value=9.8e-12 Score=110.88 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=79.0
Q ss_pred ceEEEEEeCCeeecceEEecccceeeecccCc-cCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCC
Q 010574 388 RWRLYVFKAGEMLKEPLYIHRQSCYLFGRERR-VADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTN 466 (507)
Q Consensus 388 ~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~-~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTN 466 (507)
.|.|.|+.+-... ..+.|.. ..|+||.+ . .|||+|.++.||+.||+|++.. ..|+|. +|+|
T Consensus 4 ~~klrvlsG~~~G-~~l~L~~-~~~~IGs~-~~~~DLvL~D~~Vs~~H~~L~~~~-------------~g~~L~--~s~n 65 (123)
T 4a0e_A 4 SWVCRFYQGKHRG-VEVELPH-GRCVFGSD-PLQSDIVLSDSEIAPVHLVLMVDE-------------EGIRLT--DSAE 65 (123)
T ss_dssp CEEEEECSGGGTT-CEEEECS-EEEEEESC-TTTCSEECCCTTSCSSCEEEEEET-------------TEEEEE--EESS
T ss_pred eEEEEEecCCCCC-cEEEcCC-CcEEECCC-CCCCCEEEeCCCccceeEEEEECC-------------CeEEEE--eccC
Confidence 5899999864433 4677754 57999998 6 8999999999999999999874 358886 8999
Q ss_pred ccccCCeecCCCCeeecCCCCEEEEcCceEEEEEec
Q 010574 467 KTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLH 502 (507)
Q Consensus 467 GTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~ 502 (507)
||||||++|.... .|.+|++|.+|...+.|.-..
T Consensus 66 gt~vdG~~v~~~~--~L~~g~~l~lG~~~l~~~~~~ 99 (123)
T 4a0e_A 66 PLLQEGLPVPLGT--LLRAGSCLEVGFLLWTFVAVG 99 (123)
T ss_dssp CCEETTEECCTTC--BCCTTSCEEETTEEEEEEETT
T ss_pred CEEECCEEccccc--ccCCCCEEEEccEEEEEEcCC
Confidence 9999999988764 799999999999997665443
No 33
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.21 E-value=5.8e-11 Score=102.66 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=74.3
Q ss_pred eEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCeee
Q 010574 403 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYE 482 (507)
Q Consensus 403 ~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryve 482 (507)
.|.|......+|||+ +.+.| .+..|||+||.|.+... .+.++|.++ ++|+|||||..|.....++
T Consensus 16 ~I~L~~g~~v~iGR~-p~t~I--~DkrcSR~h~~L~~~~~-----------~g~v~vk~l-g~Np~~vng~~l~k~~~~~ 80 (102)
T 3kt9_A 16 RIRLPHLEAVVIGRG-PETKI--TDKKCSRQQVQLKAECN-----------KGYVKVKQV-GVNPTSIDSVVIGKDQEVK 80 (102)
T ss_dssp EEECCBTCEEEECSS-TTTCC--CCTTSCSSCEEEEEETT-----------TTEEEEEEC-SSSCCEETTEECCBTCEEE
T ss_pred cEEcCCCCcEEeccC-Ccccc--ccCcccCcceEEEEecC-----------CCEEEEEEC-cCCCCeECCEEcCCCCeEE
Confidence 578877777889998 56655 69999999999998752 146799999 5999999999999999999
Q ss_pred cCCCCEEEEcCceEEEEEecC
Q 010574 483 LFEKDTIKFGNSSREYVLLHE 503 (507)
Q Consensus 483 L~dGDvIkFG~STreYVLl~e 503 (507)
|.+||+|.|-...+.|.|.|+
T Consensus 81 L~~GD~l~Ll~~~~~~~v~f~ 101 (102)
T 3kt9_A 81 LQPGQVLHMVNELYPYIVEFE 101 (102)
T ss_dssp ECTTCCEEEETTEEEEEEEEE
T ss_pred eCCCCEEEEccCCceEEEEec
Confidence 999999999999998988875
No 34
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.15 E-value=2e-10 Score=107.67 Aligned_cols=101 Identities=20% Similarity=0.225 Sum_probs=71.7
Q ss_pred EEEEEeCCeeec-ceEEecccceeeecccC--ccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCC
Q 010574 390 RLYVFKAGEMLK-EPLYIHRQSCYLFGRER--RVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTN 466 (507)
Q Consensus 390 rL~VfKgGe~l~-e~i~L~~qs~ylIGRdr--~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTN 466 (507)
+|+-+..+..+. -.+|......++|||.. ..|||+|..+.|+.+||+|...... ...+.++|..+ +.+
T Consensus 70 hLvnLn~Dp~ls~~l~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~--------~~~~~vtl~p~-~~a 140 (184)
T 4egx_A 70 HLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRG--------GSEAVVTLEPC-EGA 140 (184)
T ss_dssp EEEECCCCTTCSSCSEEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCS--------SCSCEEEEEEC-TTC
T ss_pred eEEeccCCcccCceEEEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCC--------CceEEEEEeeC-CCC
Confidence 555554332221 13343355678999953 3599999999999999999875311 01245677777 678
Q ss_pred ccccCCeecCCCCeeecCCCCEEEEcCceEEEEEec
Q 010574 467 KTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLH 502 (507)
Q Consensus 467 GTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~ 502 (507)
.|||||.+|. .++.|++||.|.||.+.+ |+|.+
T Consensus 141 ~t~VNG~~I~--~~~~L~~GDrI~lG~~h~-Frfn~ 173 (184)
T 4egx_A 141 DTYVNGKKVT--EPSILRSGNRIIMGKSHV-FRFNH 173 (184)
T ss_dssp CEEETTEECC--SCEECCTTCEEEETTTEE-EEEEC
T ss_pred eEEEcCEEcc--ccEEcCCCCEEEECCCCE-EEECC
Confidence 8999999997 468999999999998753 66655
No 35
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=99.02 E-value=4.4e-10 Score=108.57 Aligned_cols=79 Identities=15% Similarity=0.070 Sum_probs=61.7
Q ss_pred eEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCcc-ccCCeecCCCCee
Q 010574 403 PLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKT-YLNDNPIEPQRYY 481 (507)
Q Consensus 403 ~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGT-FVNGeRI~~~ryv 481 (507)
.|++..+ .++||++ ..|||+|+++ + ||.|.... . . ..+.|+|.||+|+||| ||||++|... .
T Consensus 86 ~y~~~~~-~itIG~~-~~~dI~l~~~-~---~~~~~~~~-~----~----~~~~~~l~~l~s~ngtvyvNg~~i~~~--~ 148 (238)
T 1wv3_A 86 AYPSIQD-TMTIGPN-AYDDMVIQSL-M---NAIIIKDF-Q----S----IQESQYVRIVHDKNTDVYINYELQEQL--T 148 (238)
T ss_dssp ECCSSCS-EEEEESS-TTSSEECTTC-S---SCEEEECG-G----G----HHHHCEEEEECCTTCCEEETTEECCSS--E
T ss_pred EEecCCc-eEEEeCC-CCCeEEeCCC-e---eEEEEecc-c----C----cCCcEEEEEccCCCCCEEECCEEeccc--e
Confidence 4556555 8999998 7999999988 4 57666541 0 0 0026999999999997 9999999854 4
Q ss_pred ecC-CCCEEEEcCceEEE
Q 010574 482 ELF-EKDTIKFGNSSREY 498 (507)
Q Consensus 482 eL~-dGDvIkFG~STreY 498 (507)
.|. .||+|.||...+.|
T Consensus 149 ~L~~~GD~I~ig~~~~~~ 166 (238)
T 1wv3_A 149 NKAYIGDHIYVEGIWLEV 166 (238)
T ss_dssp EEEETTCEEEETTEEEEE
T ss_pred eccCCcCEEEECCEEEEE
Confidence 799 99999999988655
No 36
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.02 E-value=9.9e-10 Score=96.28 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=69.5
Q ss_pred eEEec-ccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCCee
Q 010574 403 PLYIH-RQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYY 481 (507)
Q Consensus 403 ~i~L~-~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~ryv 481 (507)
.|.|. ....++|||++ +..|.+..||++|+.|.+.... ..+.|.+| ++|+|||||.+|.+...+
T Consensus 21 ~I~Lp~~~g~~viGR~p---~t~I~DkrcSR~hv~L~ad~~~-----------~~v~vk~l-G~Np~~vng~~l~k~~~~ 85 (110)
T 2brf_A 21 PIFLPSDGQALVLGRGP---LTQVTDRKCSRTQVELVADPET-----------RTVAVKQL-GVNPSTTGTQELKPGLEG 85 (110)
T ss_dssp CEECCSTTCCEEECSBT---TTTBCCTTSCSSCEEEEEETTT-----------TEEEEEEC-SSSCCEEC-CBCCTTCEE
T ss_pred cEEeccCCCCEEEcCCC---CcccccccceeeeEEEEEecCC-----------CEEEEEEc-ccCCcEECCEEcCCCCEE
Confidence 57773 33569999984 4446799999999999987532 56888999 889999999999999999
Q ss_pred ecCCCCEEEEcCceEEEEEecC
Q 010574 482 ELFEKDTIKFGNSSREYVLLHE 503 (507)
Q Consensus 482 eL~dGDvIkFG~STreYVLl~e 503 (507)
.|++||+|.|=...+.|.+.|+
T Consensus 86 ~L~~GD~leLl~g~y~~~v~f~ 107 (110)
T 2brf_A 86 SLGVGDTLYLVNGLHPLTLRWE 107 (110)
T ss_dssp EEETTCEEEEETTEEEEEEEEE
T ss_pred EecCCCEEEEccCCeEEEEEec
Confidence 9999999999766666776664
No 37
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.94 E-value=2.3e-09 Score=97.89 Aligned_cols=96 Identities=15% Similarity=0.167 Sum_probs=72.3
Q ss_pred eEEEEEeCCeeecceEEec-ccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCc
Q 010574 389 WRLYVFKAGEMLKEPLYIH-RQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNK 467 (507)
Q Consensus 389 wrL~VfKgGe~l~e~i~L~-~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNG 467 (507)
+.|....++. ..|.|. ....++|||++ +..|.+..||++|+.|.+.... ..+.|.+| ++|+
T Consensus 10 c~L~p~d~~~---~~I~Lp~~~g~vvIGRgP---et~ItDkRcSR~qv~L~ad~~~-----------g~V~Vk~l-G~NP 71 (143)
T 1yj5_C 10 LWLQSPTGGP---PPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPES-----------RTVAVKQL-GVNP 71 (143)
T ss_dssp EEEECCTTSC---CCEECCTTTCEEEECSBT---TTTBCCSSSCSSCEEEEEETTT-----------TEEEEEEC-SSSC
T ss_pred EEEEecCCCC---CcEEeccCCCCEEEcCCC---ccccccccccceeEEEEEecCC-----------CeEEEEEc-ccCC
Confidence 4455554442 247773 34679999984 4457899999999999987532 46779999 7799
Q ss_pred cccCCeecCCCCeeecCCCCEEEEcCceEEEEEec
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLH 502 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~ 502 (507)
|||||..|.....+.|.+||+|.|=...+.|.|.+
T Consensus 72 ~~vng~~L~k~~~~~L~~GD~LeLl~g~y~f~V~f 106 (143)
T 1yj5_C 72 STVGVHELKPGLSGSLSLGDVLYLVNGLYPLTLRW 106 (143)
T ss_dssp CEETTEECCTTCEEEECTTCEEESSSSCSEEEEEE
T ss_pred cEECCEEecCCCEEEecCCCEEEEecCCceEEEEe
Confidence 99999999999999999999999655444444444
No 38
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.85 E-value=2.4e-09 Score=95.10 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=71.8
Q ss_pred eEEEEEeCCeeecceEEec-ccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCc
Q 010574 389 WRLYVFKAGEMLKEPLYIH-RQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNK 467 (507)
Q Consensus 389 wrL~VfKgGe~l~e~i~L~-~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNG 467 (507)
+.|....++.. .|.|. ....++|||.+ +..|.+..|||+|+.|.+.... ..+.|.+| ++|+
T Consensus 17 c~L~~~~~~~~---~I~Lp~~~g~~viGRgp---~t~I~DkrcSR~qv~L~ad~~~-----------~~v~vk~l-G~NP 78 (119)
T 1ujx_A 17 LWLQSPTGGPP---PIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPES-----------RTVAVKQL-GVNP 78 (119)
T ss_dssp EEEECCSSSCC---CCCCCTTSCCEEESBBT---TTTBCCTTSCTTSEEEEEETTT-----------TEEEEEEC-SSSC
T ss_pred EEEEeCCCCCC---cEEeccCCCCEEEcCCC---CcccccccccceeEEEEEecCC-----------CEEEEEEc-ccCC
Confidence 44555544422 35663 33569999984 4456899999999999987532 56788999 7799
Q ss_pred cccCCeecCCCCeeecCCCCEEEEcCceEEEEEec
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLH 502 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~ 502 (507)
|||||.+|.+...++|.+||+|.|=.-.+.|.|.+
T Consensus 79 ~~vng~~l~k~~~~~L~~GD~l~Ll~g~y~~~v~f 113 (119)
T 1ujx_A 79 STVGVQELKPGLSGSLSLGDVLYLVNGLYPLTLRW 113 (119)
T ss_dssp CBSSSSBCCTTCEEEEETTCCCBCBTTBSCCEEEE
T ss_pred cEECCEEecCCCEEEecCCCEEEEecCCeEEEEEe
Confidence 99999999999999999999999655544455544
No 39
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=75.63 E-value=6.4 Score=37.71 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=32.9
Q ss_pred EEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEe
Q 010574 390 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFR 440 (507)
Q Consensus 390 rL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR 440 (507)
.|++|-++... .+.|.....|+||.. ..|||.|.+. ..|+.|.+.
T Consensus 3 ~l~i~y~~~~~--~~~L~~~~~~tiG~~-~~~~itl~~~---~~~i~l~~~ 47 (238)
T 1wv3_A 3 KLIIKYNKQLK--MLNLRDGKTYTISED-ERADITLKSL---GEVIHLEQN 47 (238)
T ss_dssp EEEEEETTEEE--EEECCTTCCEEEESC-TTSSEECTTC---CCCEEEEEC
T ss_pred EEEEEECCEEE--EEecCCCcEEEECCC-ccceEEecCC---CccEEEEEc
Confidence 46777665433 467754678999998 7999999877 567777764
No 40
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=47.56 E-value=16 Score=29.49 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=22.7
Q ss_pred CccccCCeecCCCCeeecCCCCEEEEcCceEEEEE
Q 010574 466 NKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVL 500 (507)
Q Consensus 466 NGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVL 500 (507)
...+|||+.+.+. +.|..||+|.|-.....|++
T Consensus 26 G~V~VNg~~~~~~--~~v~~gd~I~v~~~~~~~~~ 58 (92)
T 2k6p_A 26 GAVWLNGSCAKAS--KEVKAGDTISLHYLKGIEEY 58 (92)
T ss_dssp TCCEETTEECCTT--CBCCTTCEEEECCSSCCEEE
T ss_pred CcEEECCEEcCCC--CCcCCCCEEEEEeCCceEEE
Confidence 3478999987543 47999999999654433333
No 41
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=41.25 E-value=20 Score=31.49 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=20.0
Q ss_pred CccccCCeecCCCCeeecCCCCEEEEcCc
Q 010574 466 NKTYLNDNPIEPQRYYELFEKDTIKFGNS 494 (507)
Q Consensus 466 NGTFVNGeRI~~~ryveL~dGDvIkFG~S 494 (507)
...+|||+.+.+. +.|..||+|.|-..
T Consensus 34 G~V~VNG~~vk~s--~~V~~GD~I~I~~~ 60 (133)
T 1dm9_A 34 GKVHYNGQRSKPS--KIVELNATLTLRQG 60 (133)
T ss_dssp TCEEETTEECCTT--CBCCTTCEEEEEET
T ss_pred CcEEECCEEcCCC--CEeCCCCEEEEEeC
Confidence 3478999987544 47899999988543
No 42
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=38.18 E-value=13 Score=28.37 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=17.1
Q ss_pred cccCCeecCCCCe--eecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRY--YELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ry--veL~dGDvIkF 491 (507)
.+|||+-|+...| ..|++||.|.|
T Consensus 32 vavN~~~v~~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 32 VLLNEEAFLGLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred EEECCEECCccccCCcCCCCCCEEEE
Confidence 3467776665422 57999999987
No 43
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=37.18 E-value=11 Score=30.40 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=20.3
Q ss_pred cccCCeecCCCCe--eecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRY--YELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ry--veL~dGDvIkF 491 (507)
+.|||+-|+...| +.|++||.|.|
T Consensus 37 VavNg~iVpr~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 37 VELNGEVLEREAFDATTVKDGDAVEF 62 (78)
T ss_dssp EEETTEECCTTHHHHCEECSSBCEEE
T ss_pred EEECCEECChHHcCcccCCCCCEEEE
Confidence 5689998888766 68999999987
No 44
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=35.31 E-value=13 Score=31.93 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=18.9
Q ss_pred cccCCeecC--CCCeeecCCCCEEEE
Q 010574 468 TYLNDNPIE--PQRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~--~~ryveL~dGDvIkF 491 (507)
++|||.-|. ....++|++||+|.|
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEE
Confidence 568998764 345678999999998
No 45
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=35.08 E-value=23 Score=27.97 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=22.6
Q ss_pred CccccCCeecCCCCeeecCCCCEEEEcCceEE
Q 010574 466 NKTYLNDNPIEPQRYYELFEKDTIKFGNSSRE 497 (507)
Q Consensus 466 NGTFVNGeRI~~~ryveL~dGDvIkFG~STre 497 (507)
...+|||+.+... .+.|..||+|+|+.....
T Consensus 46 G~V~VNG~~v~~~-~~~v~~gd~I~v~~~~~~ 76 (79)
T 1p9k_A 46 GQVKVDGAVETRK-RCKIVAGQTVSFAGHSVQ 76 (79)
T ss_dssp HHHEETTBCCCCS-SCCCCSSEEEEETTEEEE
T ss_pred CEEEECCEEecCC-CCCCCCCCEEEECCEEEE
Confidence 4467899887433 346889999999887643
No 46
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=34.46 E-value=9.4 Score=30.42 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.5
Q ss_pred cccCCeecCCCCe--eecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRY--YELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ry--veL~dGDvIkF 491 (507)
+.|||+-|+...| +.|++||.|.|
T Consensus 33 V~vNg~iVpr~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 33 VALNYDVVPRGKWDETPVTAGDEIEI 58 (73)
T ss_dssp EEESSSEECHHHHTTCBCCTTCEEEE
T ss_pred EEECCEECChHHcCcccCCCCCEEEE
Confidence 4578887776544 58999999987
No 47
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=34.15 E-value=16 Score=30.32 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=17.9
Q ss_pred cccCCeecCCCCe--eecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRY--YELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ry--veL~dGDvIkF 491 (507)
+.|||+-|+...| +.|++||.|.|
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEI 80 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEE
Confidence 4578887776443 57999999987
No 48
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=31.68 E-value=27 Score=26.87 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=16.5
Q ss_pred cccCCeecCCCCeeecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkF 491 (507)
..|||+-|... ..|++||.|.|
T Consensus 49 v~vNg~~v~~~--~~L~~gD~V~i 70 (77)
T 2q5w_D 49 VAVNEEFVQKS--DFIQPNDTVAL 70 (77)
T ss_dssp EEETTEEECTT--SEECTTCEEEE
T ss_pred EEECCEECCCC--CCcCCCCEEEE
Confidence 45677766643 58999999987
No 49
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=31.04 E-value=14 Score=31.87 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=18.1
Q ss_pred cccCCeecC--CCCeeecCCCCEEEE
Q 010574 468 TYLNDNPIE--PQRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~--~~ryveL~dGDvIkF 491 (507)
+||||+-|. ...-++|++||.|.|
T Consensus 76 VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 76 VLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp EEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred EEECCeeeeccCCcCcCCCCCCEEEE
Confidence 468888653 344568999999988
No 50
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=30.93 E-value=27 Score=27.79 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=17.5
Q ss_pred ccccCCeecCCCCeeecCCCCEEEE
Q 010574 467 KTYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 467 GTFVNGeRI~~~ryveL~dGDvIkF 491 (507)
-.+|||+.+... ..|++||.|.|
T Consensus 60 ~v~VN~~~v~~~--~~l~~gDeV~i 82 (89)
T 3po0_A 60 NVLRNGEAAALG--EATAAGDELAL 82 (89)
T ss_dssp EEEETTEECCTT--SBCCTTCEEEE
T ss_pred EEEECCEECCCC--cccCCCCEEEE
Confidence 356788877643 57999999987
No 51
>3mml_A Allophanate hydrolase subunit 2; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=30.72 E-value=76 Score=32.23 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=31.4
Q ss_pred CCCCccccCCeecCCCCeeecCCCCEEEEcCc---eEEEEEe
Q 010574 463 GSTNKTYLNDNPIEPQRYYELFEKDTIKFGNS---SREYVLL 501 (507)
Q Consensus 463 gSTNGTFVNGeRI~~~ryveL~dGDvIkFG~S---TreYVLl 501 (507)
|-.-...|||+.|.....+.|+.||+|+||.. .+.|+-+
T Consensus 78 GA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~~~G~R~YLAV 119 (318)
T 3mml_A 78 GADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAV 119 (318)
T ss_dssp ESCCCCEETTEECCTTSCEEECTTCEEECCCCSSCSEEEEEE
T ss_pred CCCCcceECCEEcCCCeEEEECCCCEEEeCCCCCccEEEEEE
Confidence 34455679999999999999999999999975 4567543
No 52
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=28.30 E-value=19 Score=30.44 Aligned_cols=28 Identities=43% Similarity=0.430 Sum_probs=21.2
Q ss_pred eCCCCCccccCCeecCCCCeeecCCCCEEEE
Q 010574 461 DLGSTNKTYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 461 DLgSTNGTFVNGeRI~~~ryveL~dGDvIkF 491 (507)
|| +.+-..|||+.++.. ..|++||.|.|
T Consensus 55 dl-~~~~V~Vng~~v~~d--~~L~dGDRVEI 82 (97)
T 2hj1_A 55 DL-STNKIGIFSRPIKLT--DVLKEGDRIEI 82 (97)
T ss_dssp CT-TTSEEEEEECSCCTT--CBCCTTCEEEE
T ss_pred cc-cccEEEEcCEECCCC--ccCCCCCEEEE
Confidence 55 456677888888743 57999999987
No 53
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=25.88 E-value=33 Score=28.03 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=17.1
Q ss_pred cccCCeecCCCCeeecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkF 491 (507)
.+|||+-|.. -+.|++||.|.|
T Consensus 70 v~VNg~~v~~--~~~L~dGDeV~i 91 (98)
T 1vjk_A 70 IAVNGRYVSW--DEELKDGDVVGV 91 (98)
T ss_dssp EEETTBCCCT--TCBCCTTCEEEE
T ss_pred EEECCEECCC--CCCCCCCCEEEE
Confidence 5678877764 358999999987
No 54
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=25.82 E-value=39 Score=26.12 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=16.8
Q ss_pred cccCCeecCCCCeeecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkF 491 (507)
.+|||+-+.. -..|++||.|.|
T Consensus 53 v~vN~~~v~~--~~~l~~gD~V~i 74 (81)
T 1fm0_D 53 AAVNQTLVSF--DHPLTDGDEVAF 74 (81)
T ss_dssp EEETTEECCT--TCBCCTTCEEEE
T ss_pred EEECCEECCC--CCCCCCCCEEEE
Confidence 5677777753 348999999987
No 55
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=25.76 E-value=31 Score=27.18 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=16.7
Q ss_pred cccCCeecCC--CCeeecCCCCEEEE
Q 010574 468 TYLNDNPIEP--QRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~--~ryveL~dGDvIkF 491 (507)
.+|||+-|.. .....|++||.|.|
T Consensus 58 v~vN~~~v~~~~~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 58 ILVNGNNITSMKGLDTEIKDDDKIDL 83 (90)
T ss_dssp EEESSSBGGGTCSSSCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCCCCCCEEEE
Confidence 5567776652 22357999999987
No 56
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=25.32 E-value=33 Score=27.55 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=16.5
Q ss_pred cccCCeecCC--CCeeecCCCCEEEE
Q 010574 468 TYLNDNPIEP--QRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~--~ryveL~dGDvIkF 491 (507)
.+|||+-|.. ....+|++||.|.|
T Consensus 61 v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 61 IYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEECCEEccCcCCCCcCCCCCCEEEE
Confidence 4567776652 12357999999987
No 57
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=25.30 E-value=12 Score=28.68 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=17.3
Q ss_pred cccCCeecCCCCe--eecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRY--YELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ry--veL~dGDvIkF 491 (507)
.+|||+-|+...+ ..|++||.|.|
T Consensus 34 vavN~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 34 LAINQQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp EEETTEEECHHHHTTCCCCTTEEECE
T ss_pred EEECCEECCchhcCCcCCCCCCEEEE
Confidence 4578887775322 47999999976
No 58
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=24.97 E-value=33 Score=26.63 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=14.4
Q ss_pred ccCCeecCCCCeeecCCCCEEEE
Q 010574 469 YLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 469 FVNGeRI~~~ryveL~dGDvIkF 491 (507)
+|||+-|.. ....|++||.|.|
T Consensus 46 avN~~~v~~-~~~~l~~gDeV~i 67 (74)
T 3rpf_C 46 ALNDHLIDN-LNTPLKDGDVISL 67 (74)
T ss_dssp EESSSEECC-TTCCCCTTCEEEE
T ss_pred EECCEEcCC-CCcCCCCCCEEEE
Confidence 355555432 2357999999987
No 59
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=24.80 E-value=45 Score=25.79 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=15.9
Q ss_pred ccCCeecCCCCeeecCCCCEEEE
Q 010574 469 YLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 469 FVNGeRI~~~ryveL~dGDvIkF 491 (507)
.|||+-++... .|++||.|.|
T Consensus 43 avN~~~v~~~~--~L~~gD~V~i 63 (70)
T 1ryj_A 43 KKNGQIVIDEE--EIFDGDIIEV 63 (70)
T ss_dssp EETTEECCTTS--BCCTTCEEEE
T ss_pred EECCEECCCcc--cCCCCCEEEE
Confidence 46777666543 7999999977
No 60
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=23.91 E-value=28 Score=28.69 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=19.5
Q ss_pred CCCccccCCeecCC--CCeeecCCCCEEEE
Q 010574 464 STNKTYLNDNPIEP--QRYYELFEKDTIKF 491 (507)
Q Consensus 464 STNGTFVNGeRI~~--~ryveL~dGDvIkF 491 (507)
|.+-.+|||+-|.. ..-+.|++||.|.|
T Consensus 63 ~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i 92 (99)
T 2l52_A 63 GSINILINGNNIRHLEGLETLLKDSDEIGI 92 (99)
T ss_dssp SSCEEEETTSCGGGTTSTTSCCCTTEEEEE
T ss_pred cccEEEECCEEccccCCCCCCCCCCCEEEE
Confidence 33456788887742 23357999999987
No 61
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=23.44 E-value=32 Score=27.90 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=17.8
Q ss_pred cccCCeecCCCCeeecCCCCEEEEc
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKFG 492 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkFG 492 (507)
-.|||+.+.-. ++|.+||+|.|=
T Consensus 44 AkVNG~~v~L~--~~L~~gd~VeIi 66 (78)
T 3hvz_A 44 AKVDGRIVPID--YKVKTGEIIDVL 66 (78)
T ss_dssp EEETTEEECTT--CBCCTTCBEEEE
T ss_pred EEECCEEcCCC--cccCCCCEEEEE
Confidence 35688888754 589999999873
No 62
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=21.89 E-value=41 Score=27.57 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=17.1
Q ss_pred cccCCeecC--CCCeeecCCCCEEEE
Q 010574 468 TYLNDNPIE--PQRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~--~~ryveL~dGDvIkF 491 (507)
.+||++-+. ...-++|++||.|.|
T Consensus 67 v~VN~~~~~~~~~~d~~L~dgDeVa~ 92 (99)
T 2qjl_A 67 TLINDTDWELEGEKDYILEDGDIISF 92 (99)
T ss_dssp EEETTEEGGGGTGGGCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCcCCCCEEEE
Confidence 567887654 123458999999987
No 63
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=21.22 E-value=21 Score=28.13 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=17.2
Q ss_pred cccCCeecCCCCeeecCCCCEEEE
Q 010574 468 TYLNDNPIEPQRYYELFEKDTIKF 491 (507)
Q Consensus 468 TFVNGeRI~~~ryveL~dGDvIkF 491 (507)
..|||+-|... +.|++||.|.|
T Consensus 49 VavNg~~v~~~--~~L~dGD~V~i 70 (77)
T 1rws_A 49 AKVNGKVVLED--DEVKDGDFVEV 70 (77)
T ss_dssp EEETTEEECSS--SCCCSSCCCBC
T ss_pred EEECCEECCCC--CCcCCCCEEEE
Confidence 56788877754 58999999876
Done!