BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010575
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 16/129 (12%)
Query: 252 IDMYAKSGKIGKALQVFENMKNK---------SVITWTTMIAGLALH-----GLGREALD 297
+DM +K G + +AL++++ + +V+ + +A A GL R D
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR-GFD 91
Query: 298 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357
+F +M +V PNE TF E+ MK+ +GI+P++ YG +
Sbjct: 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGF 150
Query: 358 GRAGYLQEA 366
R G +A
Sbjct: 151 CRKGDADKA 159
>pdb|2UY1|A Chain A, Crystal Structure Of Cstf-77
Length = 493
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 15/203 (7%)
Query: 83 LKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW 142
L V+K +EL R++ + G+ V + A I+ YA+ +F L+
Sbjct: 293 LNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRA-TPYNIFSSGLLKHP 351
Query: 143 NVAVWNTMVAGY-AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM 201
+ + + ++GD NARALF+ + EK W ++I Y M ++ LFR +
Sbjct: 352 DSTLLKEEFFLFLLRIGDEENARALFKRL-EKTSRMWDSMIE-YEFMVG---SMELFREL 406
Query: 202 ---QVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYG-LNTIVPLNNALIDMYA 256
+++ +K D I L Q+ + LG + H +++ + L+ + N+ L+D +
Sbjct: 407 VDQKMDAIKADAILPPLPPREHNVQMEGI-LGRY-HCFLDSFNFLDLKIRDNSRLLDEFM 464
Query: 257 KS-GKIGKALQVFENMKNKSVIT 278
++ KI + V N++ + VI+
Sbjct: 465 ENLPKISQQNNVLSNLRVEKVIS 487
>pdb|2UY1|B Chain B, Crystal Structure Of Cstf-77
Length = 493
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 15/203 (7%)
Query: 83 LKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW 142
L V+K +EL R++ + G+ V + A I+ YA+ +F L+
Sbjct: 293 LNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRA-TPYNIFSSGLLKHP 351
Query: 143 NVAVWNTMVAGY-AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM 201
+ + + ++GD NARALF+ + EK W ++I Y M ++ LFR +
Sbjct: 352 DSTLLKEEFFLFLLRIGDEENARALFKRL-EKTSRMWDSMIE-YEFMVG---SMELFREL 406
Query: 202 ---QVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIEQYG-LNTIVPLNNALIDMYA 256
+++ +K D I L Q+ + LG + H +++ + L+ + N+ L+D +
Sbjct: 407 VDQKMDAIKADAILPPLPPREHNVQMEGI-LGRY-HCFLDSFNFLDLKIRDNSRLLDEFM 464
Query: 257 KS-GKIGKALQVFENMKNKSVIT 278
++ KI + V N++ + VI+
Sbjct: 465 ENLPKISQQNNVLSNLRVEKVIS 487
>pdb|1VK3|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
Synthase Ii (Tm1246) From Thermotoga Maritima At 2.15 A
Resolution
Length = 615
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 332 RYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRMP---FEANAAI 381
RY NI+K + G EP +E + GY +K +RR+P FE NA +
Sbjct: 16 RYLNILKEKLGREPTFVELQAFSVXWSEHCGY-SHTKKYIRRLPKTGFEGNAGV 68
>pdb|2HRU|A Chain A, T. Maritima Purl Complexed With Adp
pdb|2HRY|A Chain A, T. Maritima Purl Complexed With Amppcp
Length = 603
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 332 RYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRMP---FEANAAIWGSLLA 387
RY NI+K + G EP +E + GY +K +RR+P FE NA +
Sbjct: 4 RYLNILKEKLGREPTFVELQAFSVMWSEHCGY-SHTKKYIRRLPKTGFEGNAGV-----V 57
Query: 388 ASNIYGDVELGECALQHLIKLEPHN---SGNYAILSNIYAILGR 428
+ Y V + H +EP+N +G I+ ++ A+ R
Sbjct: 58 NLDDYYSVAFKIESANHPSAIEPYNGAATGVGGIIRDVLAMGAR 101
>pdb|2HS0|A Chain A, T. Maritima Purl Complexed With Atp
pdb|2HS3|A Chain A, T. Maritima Purl Complexed With Fgar
pdb|2HS4|A Chain A, T. Maritima Purl Complexed With Fgar And Amppcp
Length = 603
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 332 RYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRMP---FEANAAIWGSLLA 387
RY NI+K + G EP +E + GY +K +RR+P FE NA +
Sbjct: 4 RYLNILKEKLGREPTFVELQAFSVMWSEHCGY-SHTKKYIRRLPKTGFEGNAGV-----V 57
Query: 388 ASNIYGDVELGECALQHLIKLEPHN---SGNYAILSNIYAILGR 428
+ Y V + H +EP+N +G I+ ++ A+ R
Sbjct: 58 NLDDYYSVAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGAR 101
>pdb|3D54|A Chain A, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|E Chain E, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|I Chain I, Stucture Of Purlqs From Thermotoga Maritima
Length = 629
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 332 RYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRMP---FEANAAIWGSLLA 387
RY NI+K + G EP +E + GY +K +RR+P FE NA +
Sbjct: 30 RYLNILKEKLGREPTFVELQAFSVMWSEHCGY-SHTKKYIRRLPKTGFEGNAGV-----V 83
Query: 388 ASNIYGDVELGECALQHLIKLEPHN---SGNYAILSNIYAILGR 428
+ Y V + H +EP+N +G I+ ++ A+ R
Sbjct: 84 NLDDYYSVAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGAR 127
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 351 GCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYG 393
G +I+L+ + Y A+K +RR +E++A IW ++YG
Sbjct: 107 GLIINLMRKIHY---ADKFIRRGEWESHAKIWTGFKRIESLYG 146
>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 666
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGR 96
YN + L +TD +N +L I ++A+ P N + P V A++ +S + G
Sbjct: 408 YNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSPLSAGE 460
>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 708
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGR 96
YN + L +TD +N +L I ++A+ P N + P V A++ +S + G
Sbjct: 450 YNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPDVWDALLTMSPLSAGE 502
>pdb|3MKR|A Chain A, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 291
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALH----------GLG 292
T+ L A + + A K+ A +F+ M +K T + A H G+
Sbjct: 164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVL 223
Query: 293 REALDMFSRMERARVKPNEITFIAILSACCHVG-LVELGRRYFNIMKSRYGIEPKIEQY 350
+EALD S P + + +LS H+G E+ RY + +K + P I++Y
Sbjct: 224 QEALDKDSG------HPETLINLVVLSQ--HLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,442,269
Number of Sequences: 62578
Number of extensions: 571689
Number of successful extensions: 1393
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1388
Number of HSP's gapped (non-prelim): 13
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)