Query 010575
Match_columns 507
No_of_seqs 616 out of 3420
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 02:08:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.4E-77 2.9E-82 621.8 58.0 497 1-501 213-779 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3E-77 6.4E-82 605.0 55.1 495 5-503 118-618 (697)
3 PLN03218 maturation of RBCL 1; 100.0 2.4E-62 5.2E-67 498.6 52.1 479 2-496 397-916 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 1.1E-62 2.3E-67 510.6 48.6 435 2-439 113-651 (857)
5 PLN03218 maturation of RBCL 1; 100.0 6.5E-62 1.4E-66 495.5 53.3 440 7-449 434-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.6E-57 1E-61 457.8 41.6 399 1-409 149-558 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.8E-30 6.1E-35 274.4 49.4 419 13-440 434-864 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-29 3.6E-34 268.4 51.0 426 8-442 395-832 (899)
9 PRK11447 cellulose synthase su 99.9 6.7E-22 1.4E-26 211.1 52.1 427 7-442 59-666 (1157)
10 PRK11447 cellulose synthase su 99.9 3.5E-22 7.5E-27 213.3 49.3 411 17-440 276-738 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 9.3E-24 2E-28 192.4 30.5 384 42-436 117-513 (966)
12 KOG4626 O-linked N-acetylgluco 99.9 1.9E-23 4.2E-28 190.3 31.2 420 16-445 54-488 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.3E-21 2.7E-26 196.4 44.3 391 44-441 130-570 (615)
14 PRK09782 bacteriophage N4 rece 99.9 1.6E-19 3.5E-24 184.6 47.9 213 225-443 491-707 (987)
15 PRK10049 pgaA outer membrane p 99.9 2.7E-19 5.9E-24 182.8 45.5 400 7-413 12-461 (765)
16 PRK11788 tetratricopeptide rep 99.9 5.5E-21 1.2E-25 182.4 30.9 299 118-449 42-354 (389)
17 PRK15174 Vi polysaccharide exp 99.9 1.1E-19 2.3E-24 181.8 40.4 329 79-413 45-386 (656)
18 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.5E-25 180.2 31.8 295 49-348 43-354 (389)
19 PRK10049 pgaA outer membrane p 99.9 1.3E-19 2.9E-24 185.1 40.4 395 44-444 18-458 (765)
20 PRK15174 Vi polysaccharide exp 99.9 3.3E-19 7.2E-24 178.4 42.0 346 20-373 15-378 (656)
21 TIGR00990 3a0801s09 mitochondr 99.9 8.9E-19 1.9E-23 175.9 43.8 392 13-413 130-576 (615)
22 PRK09782 bacteriophage N4 rece 99.9 4.7E-18 1E-22 174.0 44.8 418 10-444 142-742 (987)
23 PRK14574 hmsH outer membrane p 99.9 5.3E-17 1.1E-21 163.0 47.1 420 18-443 42-514 (822)
24 KOG2002 TPR-containing nuclear 99.8 2.5E-17 5.5E-22 158.5 33.7 429 7-442 267-745 (1018)
25 PRK14574 hmsH outer membrane p 99.8 6.8E-16 1.5E-20 155.1 45.2 387 50-442 43-479 (822)
26 KOG2002 TPR-containing nuclear 99.8 8.7E-16 1.9E-20 148.1 34.4 404 39-444 268-711 (1018)
27 KOG2003 TPR repeat-containing 99.8 1.3E-15 2.8E-20 134.9 31.6 410 11-428 202-709 (840)
28 KOG2076 RNA polymerase III tra 99.8 1.4E-14 3E-19 139.0 34.9 358 84-452 147-522 (895)
29 KOG0547 Translocase of outer m 99.7 1.4E-14 3.1E-19 129.5 31.0 388 44-440 118-564 (606)
30 KOG4422 Uncharacterized conser 99.7 9.1E-15 2E-19 128.6 28.7 350 6-373 203-587 (625)
31 KOG2003 TPR repeat-containing 99.7 7.8E-15 1.7E-19 130.0 27.3 392 46-440 206-687 (840)
32 PF13429 TPR_15: Tetratricopep 99.7 1.9E-17 4.1E-22 149.6 10.5 256 180-440 13-275 (280)
33 KOG0495 HAT repeat protein [RN 99.7 1.9E-12 4.1E-17 120.1 42.3 432 16-455 412-891 (913)
34 KOG4422 Uncharacterized conser 99.7 1.6E-13 3.6E-18 120.8 32.6 352 39-411 205-593 (625)
35 KOG0495 HAT repeat protein [RN 99.7 1.8E-12 3.9E-17 120.3 36.6 413 21-444 387-848 (913)
36 KOG2076 RNA polymerase III tra 99.7 1.8E-12 3.9E-17 124.8 37.9 428 10-441 139-654 (895)
37 KOG1155 Anaphase-promoting com 99.7 5.8E-13 1.3E-17 118.7 32.1 327 106-441 159-494 (559)
38 KOG1915 Cell cycle control pro 99.7 5.8E-12 1.3E-16 112.6 38.4 414 21-444 84-538 (677)
39 KOG1126 DNA-binding cell divis 99.7 1.4E-14 3E-19 134.8 22.7 271 159-439 334-617 (638)
40 KOG1915 Cell cycle control pro 99.7 2.2E-12 4.8E-17 115.3 34.9 404 43-452 75-510 (677)
41 KOG1155 Anaphase-promoting com 99.7 1.1E-12 2.4E-17 116.8 32.6 285 84-371 235-531 (559)
42 PRK10747 putative protoheme IX 99.7 2.1E-13 4.6E-18 128.9 30.3 245 186-440 129-388 (398)
43 PRK10747 putative protoheme IX 99.7 6.9E-13 1.5E-17 125.5 33.6 279 124-409 97-391 (398)
44 KOG1126 DNA-binding cell divis 99.7 3.8E-14 8.2E-19 131.9 23.1 246 190-441 334-585 (638)
45 TIGR00540 hemY_coli hemY prote 99.6 2E-12 4.4E-17 123.0 33.4 118 123-241 96-218 (409)
46 KOG1173 Anaphase-promoting com 99.6 1.2E-11 2.6E-16 113.2 35.0 261 175-440 244-516 (611)
47 PF13429 TPR_15: Tetratricopep 99.6 4.5E-15 9.8E-20 134.2 13.2 253 83-338 15-275 (280)
48 TIGR00540 hemY_coli hemY prote 99.6 1.9E-12 4.2E-17 123.1 31.0 281 155-440 95-397 (409)
49 KOG4318 Bicoid mRNA stability 99.6 1.1E-11 2.3E-16 119.1 29.6 420 2-446 17-598 (1088)
50 KOG0547 Translocase of outer m 99.6 4.4E-11 9.6E-16 107.6 31.6 387 14-411 119-569 (606)
51 COG2956 Predicted N-acetylgluc 99.5 1.5E-11 3.3E-16 104.8 25.7 294 124-448 48-353 (389)
52 COG3071 HemY Uncharacterized e 99.5 1.6E-10 3.6E-15 101.7 31.5 275 125-406 98-388 (400)
53 COG2956 Predicted N-acetylgluc 99.5 2.5E-11 5.5E-16 103.5 25.3 281 54-338 48-345 (389)
54 COG3071 HemY Uncharacterized e 99.5 1.4E-10 3.1E-15 102.1 29.4 276 157-440 97-388 (400)
55 TIGR02521 type_IV_pilW type IV 99.5 1.7E-11 3.6E-16 108.1 23.6 196 245-441 31-231 (234)
56 KOG1173 Anaphase-promoting com 99.5 5.6E-10 1.2E-14 102.5 31.7 416 5-424 44-534 (611)
57 KOG2047 mRNA splicing factor [ 99.5 1.3E-09 2.8E-14 101.6 34.2 422 11-441 103-686 (835)
58 KOG1174 Anaphase-promoting com 99.5 3.8E-09 8.3E-14 93.4 34.5 398 10-419 97-511 (564)
59 KOG1840 Kinesin light chain [C 99.4 3.2E-10 7E-15 107.0 29.9 231 210-440 199-477 (508)
60 KOG4162 Predicted calmodulin-b 99.4 1.3E-09 2.9E-14 103.7 32.6 417 6-441 319-782 (799)
61 KOG4318 Bicoid mRNA stability 99.4 9E-11 1.9E-15 112.9 23.6 91 62-162 11-101 (1088)
62 KOG1129 TPR repeat-containing 99.4 1.2E-11 2.7E-16 105.4 15.6 229 179-442 227-458 (478)
63 PF12569 NARP1: NMDA receptor- 99.4 5.9E-09 1.3E-13 99.8 34.6 409 16-438 10-516 (517)
64 KOG2047 mRNA splicing factor [ 99.4 4.6E-08 1E-12 91.5 38.4 418 5-440 76-613 (835)
65 PRK12370 invasion protein regu 99.4 3.4E-10 7.3E-15 112.1 26.4 258 174-444 255-537 (553)
66 KOG2376 Signal recognition par 99.4 4.2E-08 9E-13 91.0 37.4 409 15-440 17-518 (652)
67 TIGR02521 type_IV_pilW type IV 99.4 6.5E-10 1.4E-14 97.9 24.7 198 176-408 32-232 (234)
68 KOG1174 Anaphase-promoting com 99.3 6.4E-08 1.4E-12 85.9 34.6 297 157-487 209-519 (564)
69 KOG1840 Kinesin light chain [C 99.3 6.9E-10 1.5E-14 104.8 23.7 231 176-406 200-477 (508)
70 KOG1129 TPR repeat-containing 99.3 1.3E-10 2.8E-15 99.4 16.4 191 249-444 227-426 (478)
71 PRK12370 invasion protein regu 99.3 5.8E-10 1.3E-14 110.4 23.8 226 209-441 255-501 (553)
72 PF13041 PPR_2: PPR repeat fam 99.3 4.4E-12 9.6E-17 80.4 4.9 50 39-88 1-50 (50)
73 PRK11189 lipoprotein NlpI; Pro 99.3 6.1E-10 1.3E-14 100.9 20.3 90 248-339 67-160 (296)
74 PRK11189 lipoprotein NlpI; Pro 99.3 4.9E-09 1.1E-13 95.0 25.8 228 189-424 40-282 (296)
75 COG3063 PilF Tfp pilus assembl 99.3 8.1E-10 1.7E-14 90.2 17.8 163 278-444 37-204 (250)
76 KOG1156 N-terminal acetyltrans 99.3 1.7E-07 3.6E-12 88.1 35.2 397 51-456 51-487 (700)
77 KOG0624 dsRNA-activated protei 99.3 4.4E-08 9.6E-13 84.7 29.2 297 113-417 40-379 (504)
78 PF13041 PPR_2: PPR repeat fam 99.3 1.7E-11 3.7E-16 77.7 6.6 50 173-222 1-50 (50)
79 PF12569 NARP1: NMDA receptor- 99.3 1.6E-08 3.5E-13 96.9 29.5 91 50-143 13-109 (517)
80 KOG4340 Uncharacterized conser 99.3 2.1E-08 4.5E-13 85.1 26.1 387 44-442 13-443 (459)
81 KOG1156 N-terminal acetyltrans 99.2 8E-08 1.7E-12 90.1 32.0 390 44-443 11-435 (700)
82 KOG3785 Uncharacterized conser 99.2 6.4E-08 1.4E-12 84.1 28.2 410 17-445 29-493 (557)
83 KOG1125 TPR repeat-containing 99.2 1.6E-09 3.5E-14 100.0 19.3 249 220-487 295-556 (579)
84 COG3063 PilF Tfp pilus assembl 99.2 1.5E-08 3.3E-13 82.9 22.1 194 216-412 41-240 (250)
85 KOG0624 dsRNA-activated protei 99.2 1.1E-07 2.4E-12 82.4 28.0 296 143-444 37-372 (504)
86 KOG0548 Molecular co-chaperone 99.2 1.7E-07 3.6E-12 86.3 30.7 394 17-426 9-473 (539)
87 KOG0548 Molecular co-chaperone 99.2 3.6E-08 7.7E-13 90.5 24.6 376 49-443 10-456 (539)
88 KOG4162 Predicted calmodulin-b 99.1 3.4E-07 7.3E-12 87.8 31.5 383 71-486 318-767 (799)
89 KOG3785 Uncharacterized conser 99.1 1.8E-07 3.8E-12 81.5 26.9 381 48-439 29-454 (557)
90 KOG3616 Selective LIM binding 99.1 7E-08 1.5E-12 91.7 26.1 220 185-439 742-963 (1636)
91 PF04733 Coatomer_E: Coatomer 99.1 3.9E-09 8.4E-14 94.2 17.0 145 286-440 112-263 (290)
92 KOG2376 Signal recognition par 99.1 1.4E-06 3E-11 81.3 32.8 384 47-444 18-489 (652)
93 KOG3616 Selective LIM binding 99.1 9.9E-07 2.1E-11 84.1 30.6 282 120-440 715-1022(1636)
94 PF04733 Coatomer_E: Coatomer 99.1 2.9E-08 6.3E-13 88.7 19.9 154 253-413 110-270 (290)
95 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.5E-11 82.7 30.7 196 247-442 116-336 (355)
96 KOG0985 Vesicle coat protein c 99.0 6.1E-06 1.3E-10 81.6 34.7 341 40-425 983-1325(1666)
97 cd05804 StaR_like StaR_like; a 99.0 2E-06 4.3E-11 81.1 30.7 294 79-408 9-336 (355)
98 KOG1127 TPR repeat-containing 99.0 6.5E-07 1.4E-11 88.2 26.9 418 12-439 494-993 (1238)
99 PRK04841 transcriptional regul 99.0 2.8E-06 6E-11 90.8 33.5 324 120-443 383-761 (903)
100 PRK10370 formate-dependent nit 99.0 8.9E-08 1.9E-12 80.8 17.6 147 283-443 23-174 (198)
101 PRK15359 type III secretion sy 99.0 6.3E-08 1.4E-12 77.2 15.6 91 350-440 27-119 (144)
102 TIGR03302 OM_YfiO outer membra 98.9 8.7E-08 1.9E-12 84.4 17.8 182 243-442 31-232 (235)
103 KOG4340 Uncharacterized conser 98.9 6.6E-07 1.4E-11 76.2 20.8 399 2-414 2-449 (459)
104 KOG2053 Mitochondrial inherita 98.9 5.7E-05 1.2E-09 74.3 36.3 386 52-445 20-505 (932)
105 PRK04841 transcriptional regul 98.9 1.1E-05 2.4E-10 86.2 35.2 259 152-411 460-763 (903)
106 KOG3617 WD40 and TPR repeat-co 98.9 1.9E-05 4E-10 76.7 32.1 82 408-498 1074-1168(1416)
107 KOG0985 Vesicle coat protein c 98.9 4.2E-05 9E-10 76.0 34.0 376 8-434 982-1375(1666)
108 PLN02789 farnesyltranstransfer 98.9 1.8E-06 3.8E-11 78.3 23.5 177 261-440 88-300 (320)
109 PRK15359 type III secretion sy 98.9 1.8E-07 4E-12 74.6 15.1 123 297-425 14-138 (144)
110 KOG1127 TPR repeat-containing 98.8 2.6E-06 5.6E-11 84.1 25.0 373 57-438 474-909 (1238)
111 KOG3617 WD40 and TPR repeat-co 98.8 2.3E-05 5E-10 76.1 30.8 236 8-271 724-993 (1416)
112 PF12854 PPR_1: PPR repeat 98.8 4.2E-09 9.2E-14 59.7 3.7 34 4-37 1-34 (34)
113 KOG1070 rRNA processing protei 98.8 7.1E-07 1.5E-11 90.9 21.2 200 242-445 1455-1666(1710)
114 KOG1125 TPR repeat-containing 98.8 4.9E-07 1.1E-11 84.0 18.3 250 182-435 292-564 (579)
115 PRK15179 Vi polysaccharide bio 98.8 7.5E-07 1.6E-11 89.0 20.8 139 275-417 85-226 (694)
116 COG5010 TadD Flp pilus assembl 98.8 9.9E-07 2.2E-11 74.1 18.1 157 280-439 70-228 (257)
117 KOG1128 Uncharacterized conser 98.8 4.8E-07 1E-11 86.3 17.8 212 214-443 402-617 (777)
118 COG5010 TadD Flp pilus assembl 98.8 8.7E-07 1.9E-11 74.4 17.1 134 308-443 63-198 (257)
119 KOG1914 mRNA cleavage and poly 98.7 0.0002 4.2E-09 66.7 30.9 129 39-172 18-165 (656)
120 KOG1128 Uncharacterized conser 98.7 7.8E-06 1.7E-10 78.3 22.4 211 113-339 400-615 (777)
121 TIGR03302 OM_YfiO outer membra 98.7 3.6E-06 7.9E-11 74.0 18.8 182 208-410 31-234 (235)
122 PRK15363 pathogenicity island 98.7 7.3E-07 1.6E-11 69.8 12.4 95 347-441 35-131 (157)
123 KOG3081 Vesicle coat complex C 98.6 4.2E-05 9.1E-10 64.6 22.9 71 361-431 187-259 (299)
124 TIGR02552 LcrH_SycD type III s 98.6 1.3E-06 2.9E-11 69.3 13.7 95 347-441 17-113 (135)
125 KOG1070 rRNA processing protei 98.6 1.9E-05 4.1E-10 81.0 24.4 218 110-328 1457-1688(1710)
126 PRK10370 formate-dependent nit 98.6 7.9E-06 1.7E-10 69.0 18.5 154 252-416 23-181 (198)
127 PF12854 PPR_1: PPR repeat 98.6 8.3E-08 1.8E-12 54.4 4.4 32 106-137 2-33 (34)
128 KOG1914 mRNA cleavage and poly 98.6 0.00054 1.2E-08 63.9 34.6 427 7-439 17-536 (656)
129 PLN02789 farnesyltranstransfer 98.6 8.5E-05 1.8E-09 67.5 25.5 227 179-411 41-305 (320)
130 KOG3081 Vesicle coat complex C 98.6 7.4E-05 1.6E-09 63.1 22.2 155 252-413 115-276 (299)
131 PRK14720 transcript cleavage f 98.6 5.9E-05 1.3E-09 76.6 25.8 168 110-305 30-198 (906)
132 COG4783 Putative Zn-dependent 98.6 1.5E-05 3.3E-10 73.1 19.5 117 321-439 316-434 (484)
133 PRK14720 transcript cleavage f 98.5 3.5E-05 7.5E-10 78.2 23.8 234 143-425 30-269 (906)
134 KOG3060 Uncharacterized conser 98.5 6.1E-05 1.3E-09 63.1 21.1 186 53-240 24-221 (289)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.4E-06 5.1E-11 79.1 13.9 124 312-440 170-295 (395)
136 KOG3060 Uncharacterized conser 98.5 3.1E-05 6.6E-10 64.8 18.2 191 224-417 26-229 (289)
137 COG4783 Putative Zn-dependent 98.5 5.2E-05 1.1E-09 69.7 20.9 146 276-443 306-455 (484)
138 PRK15179 Vi polysaccharide bio 98.5 6.5E-05 1.4E-09 75.4 23.4 155 241-405 82-242 (694)
139 TIGR02552 LcrH_SycD type III s 98.5 8E-06 1.7E-10 64.8 13.8 115 298-416 5-122 (135)
140 KOG0553 TPR repeat-containing 98.4 1.7E-06 3.6E-11 74.3 9.9 81 359-439 93-175 (304)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3E-05 6.6E-10 71.8 16.2 128 247-377 171-298 (395)
142 PF09976 TPR_21: Tetratricopep 98.3 3.1E-05 6.7E-10 62.1 13.9 114 324-438 24-143 (145)
143 PF07079 DUF1347: Protein of u 98.3 0.0028 6E-08 58.1 32.1 410 21-441 17-523 (549)
144 KOG0550 Molecular chaperone (D 98.3 7.5E-05 1.6E-09 67.0 16.9 265 150-442 55-350 (486)
145 PF12895 Apc3: Anaphase-promot 98.3 8.3E-07 1.8E-11 63.5 4.1 78 360-438 2-83 (84)
146 PF09976 TPR_21: Tetratricopep 98.3 4.8E-05 1E-09 60.9 14.5 123 44-169 15-143 (145)
147 PLN03088 SGT1, suppressor of 98.3 1.7E-05 3.7E-10 73.8 13.5 98 320-419 11-110 (356)
148 PF13414 TPR_11: TPR repeat; P 98.3 2.1E-06 4.6E-11 58.8 5.7 64 378-441 2-66 (69)
149 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.6E-05 3.5E-10 61.4 11.1 90 351-440 6-103 (119)
150 cd00189 TPR Tetratricopeptide 98.2 1.4E-05 3E-10 58.7 10.2 92 350-441 3-96 (100)
151 PF14559 TPR_19: Tetratricopep 98.2 2.9E-06 6.3E-11 57.9 5.4 52 390-441 2-53 (68)
152 TIGR00756 PPR pentatricopeptid 98.2 2.3E-06 5E-11 49.3 4.2 34 43-76 2-35 (35)
153 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.6E-05 7.8E-10 59.4 12.0 105 313-417 4-114 (119)
154 COG4235 Cytochrome c biogenesi 98.2 0.00016 3.4E-09 62.8 15.8 103 343-445 152-259 (287)
155 KOG0553 TPR repeat-containing 98.1 2.6E-05 5.6E-10 67.1 10.7 108 321-430 91-200 (304)
156 PF13432 TPR_16: Tetratricopep 98.1 6.3E-06 1.4E-10 55.6 5.7 58 385-442 3-60 (65)
157 PF13812 PPR_3: Pentatricopept 98.1 3.8E-06 8.3E-11 48.0 3.9 33 42-74 2-34 (34)
158 TIGR00756 PPR pentatricopeptid 98.1 7.5E-06 1.6E-10 47.1 4.4 33 278-310 2-34 (35)
159 PRK02603 photosystem I assembl 98.1 5E-05 1.1E-09 62.9 11.0 82 347-428 35-121 (172)
160 PLN03088 SGT1, suppressor of 98.1 9E-05 2E-09 69.0 13.5 104 281-387 7-111 (356)
161 PRK10153 DNA-binding transcrip 98.0 0.00034 7.4E-09 68.1 17.6 139 274-414 335-488 (517)
162 CHL00033 ycf3 photosystem I as 98.0 5.6E-05 1.2E-09 62.4 10.5 94 346-439 34-139 (168)
163 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.3E-10 46.1 4.2 33 176-208 2-34 (34)
164 COG4700 Uncharacterized protei 98.0 0.0012 2.6E-08 52.8 16.5 133 307-441 85-221 (251)
165 cd00189 TPR Tetratricopeptide 98.0 0.00011 2.3E-09 53.8 10.6 93 316-410 5-99 (100)
166 KOG2053 Mitochondrial inherita 98.0 0.025 5.5E-07 56.5 37.1 91 314-407 439-535 (932)
167 PRK15331 chaperone protein Sic 98.0 0.001 2.2E-08 52.7 15.2 89 353-441 43-133 (165)
168 PF12895 Apc3: Anaphase-promot 97.9 3.9E-05 8.5E-10 54.8 6.4 80 325-404 3-83 (84)
169 PF13432 TPR_16: Tetratricopep 97.9 3.5E-05 7.6E-10 51.9 5.6 61 353-413 3-65 (65)
170 PF13371 TPR_9: Tetratricopept 97.9 5.3E-05 1.2E-09 52.4 6.4 57 387-443 3-59 (73)
171 PRK02603 photosystem I assembl 97.9 0.0006 1.3E-08 56.5 13.7 131 275-428 34-166 (172)
172 PF05843 Suf: Suppressor of fo 97.8 0.00084 1.8E-08 60.3 15.0 134 277-413 2-141 (280)
173 PRK10866 outer membrane biogen 97.8 0.0041 8.9E-08 54.4 18.7 180 41-235 32-237 (243)
174 KOG0550 Molecular chaperone (D 97.8 0.014 3E-07 53.1 21.6 268 85-373 58-347 (486)
175 PF14938 SNAP: Soluble NSF att 97.8 0.0056 1.2E-07 55.3 19.7 124 251-374 120-264 (282)
176 PF01535 PPR: PPR repeat; Int 97.8 3.2E-05 6.8E-10 43.0 3.4 29 43-71 2-30 (31)
177 PF04840 Vps16_C: Vps16, C-ter 97.8 0.029 6.3E-07 51.1 30.6 106 250-372 182-287 (319)
178 CHL00033 ycf3 photosystem I as 97.8 0.00097 2.1E-08 55.0 13.4 63 277-339 36-100 (168)
179 PF10037 MRP-S27: Mitochondria 97.8 0.00025 5.4E-09 66.2 10.5 119 39-157 64-186 (429)
180 PF14938 SNAP: Soluble NSF att 97.8 0.0015 3.3E-08 58.9 15.5 167 178-373 38-222 (282)
181 PRK15363 pathogenicity island 97.7 0.0017 3.8E-08 51.1 13.2 97 248-345 38-137 (157)
182 PF08579 RPM2: Mitochondrial r 97.7 0.00031 6.8E-09 51.1 8.2 80 44-123 28-116 (120)
183 KOG1130 Predicted G-alpha GTPa 97.7 0.00045 9.8E-09 62.1 10.7 129 312-440 196-342 (639)
184 PF13431 TPR_17: Tetratricopep 97.7 2.3E-05 4.9E-10 44.3 1.8 34 401-434 1-34 (34)
185 PF01535 PPR: PPR repeat; Int 97.7 5.8E-05 1.3E-09 41.9 3.4 29 177-205 2-30 (31)
186 PF14559 TPR_19: Tetratricopep 97.7 6.2E-05 1.3E-09 51.2 4.2 49 323-373 3-51 (68)
187 PF12688 TPR_5: Tetratrico pep 97.7 0.00075 1.6E-08 51.2 10.3 86 354-439 8-101 (120)
188 PF07079 DUF1347: Protein of u 97.7 0.047 1E-06 50.4 29.1 378 12-405 48-521 (549)
189 PRK10153 DNA-binding transcrip 97.7 0.0024 5.3E-08 62.3 16.3 136 305-444 331-484 (517)
190 PF13414 TPR_11: TPR repeat; P 97.6 0.00015 3.3E-09 49.4 5.5 65 346-410 2-69 (69)
191 PF05843 Suf: Suppressor of fo 97.6 0.00088 1.9E-08 60.2 11.7 128 312-441 2-135 (280)
192 PF10037 MRP-S27: Mitochondria 97.6 0.00076 1.7E-08 63.1 11.4 116 72-187 62-185 (429)
193 KOG1258 mRNA processing protei 97.6 0.079 1.7E-06 50.9 28.7 393 30-428 32-490 (577)
194 KOG1538 Uncharacterized conser 97.6 0.0086 1.9E-07 57.4 17.5 85 311-405 747-843 (1081)
195 KOG2280 Vacuolar assembly/sort 97.6 0.1 2.2E-06 51.4 29.1 356 51-439 399-796 (829)
196 KOG0543 FKBP-type peptidyl-pro 97.6 0.00068 1.5E-08 61.3 10.0 63 379-441 257-319 (397)
197 COG3898 Uncharacterized membra 97.6 0.06 1.3E-06 48.7 28.5 273 157-443 97-393 (531)
198 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.0004 8.8E-09 64.2 8.6 65 378-442 74-141 (453)
199 PF08579 RPM2: Mitochondrial r 97.5 0.0021 4.5E-08 47.0 10.4 81 177-257 27-116 (120)
200 PF13428 TPR_14: Tetratricopep 97.5 0.00014 3E-09 44.2 3.8 42 380-421 2-43 (44)
201 PF04840 Vps16_C: Vps16, C-ter 97.5 0.068 1.5E-06 48.8 26.9 108 211-334 178-285 (319)
202 PRK10803 tol-pal system protei 97.5 0.00075 1.6E-08 59.5 9.8 59 382-440 183-244 (263)
203 COG4700 Uncharacterized protei 97.5 0.015 3.2E-07 46.8 15.7 126 109-236 87-219 (251)
204 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.075 1.6E-06 49.1 25.6 372 30-412 29-535 (660)
205 PRK10866 outer membrane biogen 97.5 0.017 3.7E-07 50.6 18.0 173 251-440 38-239 (243)
206 KOG2041 WD40 repeat protein [G 97.5 0.11 2.4E-06 50.7 25.8 248 25-304 678-951 (1189)
207 KOG2796 Uncharacterized conser 97.5 0.034 7.4E-07 47.4 18.3 136 176-313 178-321 (366)
208 PF12688 TPR_5: Tetratrico pep 97.4 0.0086 1.9E-07 45.5 13.0 106 180-285 6-115 (120)
209 PF13371 TPR_9: Tetratricopept 97.4 0.00061 1.3E-08 47.0 6.0 65 355-419 3-69 (73)
210 PRK10803 tol-pal system protei 97.4 0.0045 9.8E-08 54.6 12.7 103 312-414 144-252 (263)
211 KOG2796 Uncharacterized conser 97.4 0.018 3.9E-07 49.0 15.2 124 317-441 183-314 (366)
212 PF13281 DUF4071: Domain of un 97.3 0.041 8.8E-07 50.6 18.1 159 250-411 146-337 (374)
213 KOG1130 Predicted G-alpha GTPa 97.2 0.0044 9.5E-08 56.0 10.5 126 213-338 198-342 (639)
214 PF13424 TPR_12: Tetratricopep 97.2 0.00057 1.2E-08 47.9 4.2 61 380-440 6-73 (78)
215 PF06239 ECSIT: Evolutionarily 97.1 0.0068 1.5E-07 50.3 10.4 96 165-260 35-153 (228)
216 PF13512 TPR_18: Tetratricopep 97.1 0.019 4.2E-07 44.5 11.6 87 354-440 17-126 (142)
217 KOG0543 FKBP-type peptidyl-pro 97.1 0.011 2.3E-07 53.9 11.7 94 347-440 257-353 (397)
218 PF13525 YfiO: Outer membrane 97.0 0.017 3.6E-07 49.3 12.4 57 49-107 13-73 (203)
219 COG3898 Uncharacterized membra 97.0 0.25 5.5E-06 44.9 28.4 275 88-373 96-389 (531)
220 PF13525 YfiO: Outer membrane 97.0 0.18 4E-06 42.9 18.9 50 317-366 147-197 (203)
221 PF13424 TPR_12: Tetratricopep 97.0 0.0013 2.8E-08 46.0 4.3 60 349-408 7-75 (78)
222 PF06239 ECSIT: Evolutionarily 96.9 0.014 3E-07 48.5 10.6 95 266-361 35-152 (228)
223 COG4235 Cytochrome c biogenesi 96.8 0.084 1.8E-06 46.3 14.8 104 308-413 153-261 (287)
224 PF03704 BTAD: Bacterial trans 96.8 0.0063 1.4E-07 48.8 7.5 60 381-440 64-123 (146)
225 KOG2041 WD40 repeat protein [G 96.8 0.64 1.4E-05 45.7 28.8 333 73-435 689-1079(1189)
226 PF12921 ATP13: Mitochondrial 96.7 0.031 6.6E-07 43.0 10.3 53 305-357 46-98 (126)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.011 2.5E-07 55.0 9.1 63 346-408 74-141 (453)
228 KOG1538 Uncharacterized conser 96.6 0.13 2.7E-06 49.8 15.7 195 99-305 623-846 (1081)
229 PRK11906 transcriptional regul 96.6 0.048 1E-06 51.1 12.5 118 292-411 274-404 (458)
230 PF04053 Coatomer_WDAD: Coatom 96.6 0.11 2.3E-06 49.8 15.1 158 85-270 270-427 (443)
231 PF10300 DUF3808: Protein of u 96.5 0.89 1.9E-05 44.4 22.2 158 80-238 192-375 (468)
232 PRK11619 lytic murein transgly 96.5 1.1 2.4E-05 45.5 31.7 53 151-204 106-158 (644)
233 PF02259 FAT: FAT domain; Int 96.5 0.77 1.7E-05 43.1 20.7 150 275-426 145-305 (352)
234 PF10300 DUF3808: Protein of u 96.5 0.22 4.7E-06 48.5 16.9 115 324-441 246-375 (468)
235 KOG1258 mRNA processing protei 96.5 0.93 2E-05 43.9 27.6 341 75-433 44-420 (577)
236 COG3118 Thioredoxin domain-con 96.5 0.18 3.9E-06 44.2 14.3 121 320-443 143-266 (304)
237 KOG4234 TPR repeat-containing 96.5 0.022 4.8E-07 46.4 8.3 90 355-444 103-199 (271)
238 PRK11906 transcriptional regul 96.4 0.21 4.5E-06 47.0 15.5 79 362-440 319-399 (458)
239 COG0457 NrfG FOG: TPR repeat [ 96.4 0.55 1.2E-05 40.7 27.3 194 246-441 60-264 (291)
240 PF13512 TPR_18: Tetratricopep 96.4 0.14 3.1E-06 39.8 12.0 116 282-414 16-134 (142)
241 PF03704 BTAD: Bacterial trans 96.3 0.14 3.1E-06 40.9 12.8 72 278-350 64-139 (146)
242 COG1729 Uncharacterized protei 96.3 0.059 1.3E-06 46.7 10.6 102 313-415 144-251 (262)
243 PF00515 TPR_1: Tetratricopept 96.3 0.0081 1.8E-07 33.9 3.8 32 380-411 2-33 (34)
244 PF13281 DUF4071: Domain of un 96.3 0.83 1.8E-05 42.3 18.4 75 146-220 143-227 (374)
245 KOG1941 Acetylcholine receptor 96.3 0.19 4.1E-06 45.2 13.6 122 317-438 128-271 (518)
246 COG3118 Thioredoxin domain-con 96.3 0.54 1.2E-05 41.4 16.1 172 263-436 121-295 (304)
247 KOG2280 Vacuolar assembly/sort 96.3 1.4 3.1E-05 43.8 31.7 303 116-440 442-771 (829)
248 PF09205 DUF1955: Domain of un 96.3 0.35 7.6E-06 36.8 13.8 140 287-445 13-152 (161)
249 PF07719 TPR_2: Tetratricopept 96.2 0.013 2.8E-07 33.0 4.5 33 380-412 2-34 (34)
250 COG0457 NrfG FOG: TPR repeat [ 96.2 0.72 1.6E-05 39.9 26.6 200 210-411 59-268 (291)
251 COG4105 ComL DNA uptake lipopr 96.2 0.53 1.2E-05 40.6 15.5 177 44-237 38-231 (254)
252 KOG2610 Uncharacterized conser 96.2 0.066 1.4E-06 47.4 10.2 158 287-447 114-281 (491)
253 PRK15331 chaperone protein Sic 96.1 0.19 4E-06 40.2 11.7 83 288-373 49-131 (165)
254 PF04184 ST7: ST7 protein; In 96.0 0.54 1.2E-05 44.5 15.9 103 312-414 260-381 (539)
255 smart00299 CLH Clathrin heavy 96.0 0.56 1.2E-05 37.1 14.6 86 44-137 10-95 (140)
256 KOG2114 Vacuolar assembly/sort 96.0 2.1 4.7E-05 43.2 26.1 174 17-202 341-517 (933)
257 smart00299 CLH Clathrin heavy 95.9 0.65 1.4E-05 36.7 14.4 126 279-424 10-136 (140)
258 COG1729 Uncharacterized protei 95.9 0.083 1.8E-06 45.8 9.4 91 349-442 144-244 (262)
259 PF12921 ATP13: Mitochondrial 95.8 0.13 2.9E-06 39.5 9.5 76 312-387 3-96 (126)
260 KOG2610 Uncharacterized conser 95.8 0.33 7.2E-06 43.2 12.8 109 89-198 116-232 (491)
261 PF13428 TPR_14: Tetratricopep 95.8 0.022 4.7E-07 34.4 4.2 30 413-442 1-30 (44)
262 KOG4555 TPR repeat-containing 95.6 0.16 3.4E-06 38.4 8.8 89 356-444 52-146 (175)
263 KOG1920 IkappaB kinase complex 95.6 3.8 8.3E-05 43.3 22.7 113 207-336 932-1051(1265)
264 KOG2066 Vacuolar assembly/sort 95.5 3.2 7E-05 41.7 24.8 30 247-276 507-536 (846)
265 KOG3941 Intermediate in Toll s 95.5 0.077 1.7E-06 45.9 7.6 98 29-126 53-173 (406)
266 PF09205 DUF1955: Domain of un 95.4 0.77 1.7E-05 35.0 11.7 62 179-241 90-151 (161)
267 COG5107 RNA14 Pre-mRNA 3'-end 95.3 2.5 5.3E-05 39.6 29.2 375 60-439 28-528 (660)
268 PF04053 Coatomer_WDAD: Coatom 95.2 1 2.2E-05 43.4 15.1 160 183-374 269-429 (443)
269 COG4105 ComL DNA uptake lipopr 95.1 1.9 4.2E-05 37.2 19.8 56 385-440 173-231 (254)
270 KOG2114 Vacuolar assembly/sort 95.0 1.9 4.1E-05 43.6 16.5 177 213-405 337-516 (933)
271 KOG1941 Acetylcholine receptor 94.9 1.1 2.4E-05 40.5 13.3 41 156-196 18-64 (518)
272 PF07035 Mic1: Colon cancer-as 94.9 1.7 3.6E-05 35.3 13.7 31 64-94 17-47 (167)
273 KOG4555 TPR repeat-containing 94.9 0.099 2.1E-06 39.5 5.9 56 386-441 50-105 (175)
274 KOG3941 Intermediate in Toll s 94.8 0.37 7.9E-06 41.9 9.7 108 165-272 55-186 (406)
275 PF13181 TPR_8: Tetratricopept 94.8 0.059 1.3E-06 30.2 3.6 31 381-411 3-33 (34)
276 PF13176 TPR_7: Tetratricopept 94.6 0.069 1.5E-06 30.5 3.6 26 415-440 1-26 (36)
277 PF08631 SPO22: Meiosis protei 94.6 3.4 7.3E-05 37.3 23.1 159 52-210 4-192 (278)
278 KOG0890 Protein kinase of the 94.5 12 0.00025 43.2 28.0 312 116-444 1388-1733(2382)
279 COG4649 Uncharacterized protei 94.4 0.81 1.8E-05 36.7 10.0 120 287-407 69-195 (221)
280 COG4649 Uncharacterized protei 94.4 0.69 1.5E-05 37.1 9.6 131 41-172 59-195 (221)
281 PF08631 SPO22: Meiosis protei 94.3 3.8 8.2E-05 36.9 22.8 61 212-273 86-149 (278)
282 PF13176 TPR_7: Tetratricopept 94.2 0.082 1.8E-06 30.2 3.4 27 381-407 1-27 (36)
283 COG4785 NlpI Lipoprotein NlpI, 94.2 2.9 6.4E-05 35.1 14.1 162 276-444 99-268 (297)
284 PF04184 ST7: ST7 protein; In 94.2 1.3 2.9E-05 42.0 12.7 65 383-447 263-329 (539)
285 KOG1586 Protein required for f 94.1 3.3 7.1E-05 35.3 13.9 61 353-413 119-188 (288)
286 KOG4648 Uncharacterized conser 93.9 0.11 2.4E-06 46.2 5.1 113 317-436 103-218 (536)
287 TIGR02561 HrpB1_HrpK type III 93.8 0.53 1.2E-05 36.8 8.0 53 391-443 22-74 (153)
288 KOG4648 Uncharacterized conser 93.8 0.22 4.8E-06 44.4 6.6 94 282-379 103-198 (536)
289 KOG3364 Membrane protein invol 93.7 0.98 2.1E-05 34.6 8.9 64 377-440 30-98 (149)
290 KOG1920 IkappaB kinase complex 93.6 12 0.00026 39.9 19.8 111 252-373 915-1025(1265)
291 PF02259 FAT: FAT domain; Int 93.6 6.4 0.00014 36.8 18.4 65 377-441 144-212 (352)
292 PF14432 DYW_deaminase: DYW fa 93.4 0.084 1.8E-06 39.9 3.2 43 449-503 2-44 (116)
293 PF14853 Fis1_TPR_C: Fis1 C-te 93.4 0.41 8.8E-06 30.1 5.7 51 415-491 3-53 (53)
294 PF09613 HrpB1_HrpK: Bacterial 93.4 0.76 1.7E-05 36.6 8.4 71 358-428 21-93 (160)
295 COG3629 DnrI DNA-binding trans 93.3 0.48 1E-05 41.9 7.9 61 380-440 154-214 (280)
296 PRK09687 putative lyase; Provi 93.2 6.2 0.00013 35.5 24.8 238 32-286 28-277 (280)
297 PF10602 RPN7: 26S proteasome 93.1 3.2 7E-05 34.3 12.2 96 278-373 38-139 (177)
298 PF09613 HrpB1_HrpK: Bacterial 92.9 4.1 8.9E-05 32.6 12.8 89 320-411 19-109 (160)
299 PRK15180 Vi polysaccharide bio 92.6 2.6 5.5E-05 39.8 11.8 127 321-449 299-427 (831)
300 KOG4570 Uncharacterized conser 92.4 0.54 1.2E-05 41.6 6.8 48 91-138 115-162 (418)
301 COG3947 Response regulator con 92.4 7.4 0.00016 34.4 15.5 58 383-440 283-340 (361)
302 PF13174 TPR_6: Tetratricopept 92.3 0.28 6.1E-06 27.0 3.7 27 385-411 6-32 (33)
303 PF13374 TPR_10: Tetratricopep 92.3 0.33 7.2E-06 28.5 4.2 26 381-406 4-29 (42)
304 PF00637 Clathrin: Region in C 92.3 0.22 4.7E-06 39.6 4.3 54 82-135 13-66 (143)
305 COG2976 Uncharacterized protei 92.2 5.9 0.00013 32.8 12.0 88 319-409 97-189 (207)
306 PF13170 DUF4003: Protein of u 92.2 1.7 3.7E-05 39.3 10.2 50 93-142 79-134 (297)
307 KOG2066 Vacuolar assembly/sort 91.9 16 0.00034 37.2 24.8 100 17-123 363-467 (846)
308 PF07719 TPR_2: Tetratricopept 91.9 0.24 5.1E-06 27.6 3.0 29 414-442 2-30 (34)
309 PRK09687 putative lyase; Provi 91.9 9.3 0.0002 34.4 26.5 25 385-410 241-265 (280)
310 PF00515 TPR_1: Tetratricopept 91.5 0.28 6.1E-06 27.4 3.0 30 414-443 2-31 (34)
311 PF10602 RPN7: 26S proteasome 91.5 3.1 6.7E-05 34.4 10.3 63 176-238 37-101 (177)
312 KOG1585 Protein required for f 91.4 8.6 0.00019 33.1 17.3 200 212-436 33-250 (308)
313 PF07721 TPR_4: Tetratricopept 91.4 0.28 6.1E-06 25.5 2.7 23 415-437 3-25 (26)
314 KOG1585 Protein required for f 91.4 8.6 0.00019 33.1 16.0 82 113-201 33-117 (308)
315 KOG1464 COP9 signalosome, subu 91.3 9.4 0.0002 33.3 17.5 219 180-404 70-328 (440)
316 PF02284 COX5A: Cytochrome c o 90.9 2.3 5.1E-05 30.7 7.5 62 292-355 26-87 (108)
317 KOG4234 TPR repeat-containing 90.8 4.2 9.1E-05 33.7 9.9 99 321-421 105-210 (271)
318 smart00028 TPR Tetratricopepti 90.8 0.52 1.1E-05 25.2 3.8 31 381-411 3-33 (34)
319 COG3629 DnrI DNA-binding trans 90.8 3.5 7.5E-05 36.6 10.3 78 278-356 155-236 (280)
320 PF14853 Fis1_TPR_C: Fis1 C-te 90.7 1.1 2.5E-05 28.1 5.3 35 383-417 5-39 (53)
321 PRK10941 hypothetical protein; 90.7 3 6.4E-05 37.1 9.9 61 381-441 183-243 (269)
322 PF13431 TPR_17: Tetratricopep 90.2 0.46 1E-05 26.6 3.0 22 110-131 12-33 (34)
323 KOG0890 Protein kinase of the 90.0 44 0.00096 38.9 26.1 63 347-409 1670-1732(2382)
324 PF13181 TPR_8: Tetratricopept 90.0 0.66 1.4E-05 25.7 3.6 28 414-441 2-29 (34)
325 PF13170 DUF4003: Protein of u 89.6 11 0.00024 34.2 12.8 49 191-239 78-132 (297)
326 cd00923 Cyt_c_Oxidase_Va Cytoc 89.5 6.1 0.00013 28.4 8.6 63 291-355 22-84 (103)
327 KOG0276 Vesicle coat complex C 89.5 7 0.00015 38.2 11.7 130 113-269 616-745 (794)
328 PF13374 TPR_10: Tetratricopep 89.3 0.74 1.6E-05 27.0 3.7 28 414-441 3-30 (42)
329 KOG0376 Serine-threonine phosp 89.3 0.7 1.5E-05 43.5 5.0 84 357-440 14-99 (476)
330 PF07035 Mic1: Colon cancer-as 89.1 11 0.00023 30.7 13.9 134 96-239 14-149 (167)
331 COG1747 Uncharacterized N-term 89.1 22 0.00048 34.3 22.7 174 244-424 65-250 (711)
332 cd00923 Cyt_c_Oxidase_Va Cytoc 89.1 2.8 6E-05 30.0 6.7 63 56-119 22-84 (103)
333 PF13174 TPR_6: Tetratricopept 89.1 0.53 1.2E-05 25.8 2.8 28 415-442 2-29 (33)
334 KOG2396 HAT (Half-A-TPR) repea 88.9 23 0.00049 34.1 33.1 238 193-439 300-556 (568)
335 KOG1550 Extracellular protein 88.9 28 0.00061 35.1 23.2 270 160-441 228-537 (552)
336 KOG0276 Vesicle coat complex C 88.8 12 0.00025 36.8 12.6 150 257-439 598-747 (794)
337 PF11207 DUF2989: Protein of u 88.3 3.1 6.6E-05 34.7 7.6 75 358-433 118-198 (203)
338 KOG0545 Aryl-hydrocarbon recep 88.2 12 0.00026 32.2 11.0 88 354-441 185-292 (329)
339 KOG4642 Chaperone-dependent E3 88.1 1.7 3.7E-05 37.0 6.0 83 321-406 20-105 (284)
340 COG4785 NlpI Lipoprotein NlpI, 87.4 17 0.00036 30.8 15.4 28 312-339 238-265 (297)
341 PF02284 COX5A: Cytochrome c o 87.4 2.7 5.8E-05 30.5 5.8 60 59-119 28-87 (108)
342 KOG1464 COP9 signalosome, subu 87.3 20 0.00042 31.4 22.8 176 91-267 42-253 (440)
343 PF06552 TOM20_plant: Plant sp 87.2 1.4 3E-05 35.8 4.9 33 395-427 51-83 (186)
344 PF11207 DUF2989: Protein of u 86.6 7.8 0.00017 32.4 9.0 75 292-367 122-198 (203)
345 KOG2396 HAT (Half-A-TPR) repea 86.6 32 0.00069 33.2 27.9 391 6-411 101-563 (568)
346 COG1747 Uncharacterized N-term 86.2 34 0.00073 33.2 20.0 159 174-339 65-233 (711)
347 KOG4570 Uncharacterized conser 86.1 9.2 0.0002 34.2 9.6 97 240-340 59-164 (418)
348 KOG2471 TPR repeat-containing 85.6 13 0.00028 35.5 10.8 103 253-358 248-380 (696)
349 PF13762 MNE1: Mitochondrial s 85.4 4.9 0.00011 31.6 7.0 82 43-124 41-128 (145)
350 KOG1308 Hsp70-interacting prot 85.4 0.66 1.4E-05 41.6 2.5 87 359-445 126-214 (377)
351 PF14561 TPR_20: Tetratricopep 85.1 2.5 5.4E-05 30.3 4.9 41 400-440 9-49 (90)
352 PF09986 DUF2225: Uncharacteri 85.0 6 0.00013 33.9 8.1 62 381-442 120-194 (214)
353 COG2909 MalT ATP-dependent tra 84.5 55 0.0012 34.1 30.2 184 256-439 469-685 (894)
354 TIGR03504 FimV_Cterm FimV C-te 84.4 2.1 4.5E-05 25.7 3.6 26 417-442 3-28 (44)
355 smart00386 HAT HAT (Half-A-TPR 84.1 1.7 3.7E-05 23.5 3.1 30 393-422 1-30 (33)
356 PRK15180 Vi polysaccharide bio 84.0 11 0.00023 35.9 9.5 88 322-411 334-423 (831)
357 PF00637 Clathrin: Region in C 83.3 0.75 1.6E-05 36.5 1.9 87 45-138 11-97 (143)
358 COG4455 ImpE Protein of avirul 83.2 7.6 0.00016 32.8 7.4 53 84-137 9-61 (273)
359 TIGR02508 type_III_yscG type I 83.1 15 0.00033 26.6 9.7 59 152-213 47-105 (115)
360 KOG4507 Uncharacterized conser 83.0 3.8 8.3E-05 39.8 6.5 99 323-424 619-721 (886)
361 TIGR02561 HrpB1_HrpK type III 82.7 22 0.00048 28.1 12.2 51 89-141 23-74 (153)
362 PF10345 Cohesin_load: Cohesin 82.2 64 0.0014 33.1 33.5 158 12-170 61-251 (608)
363 COG4455 ImpE Protein of avirul 81.9 6.3 0.00014 33.2 6.5 62 351-412 5-68 (273)
364 KOG1586 Protein required for f 81.6 33 0.00073 29.5 14.9 89 325-413 128-229 (288)
365 PF04097 Nic96: Nup93/Nic96; 81.4 68 0.0015 32.9 21.2 20 358-377 516-535 (613)
366 KOG3807 Predicted membrane pro 81.3 29 0.00062 31.4 10.7 22 396-417 379-400 (556)
367 KOG1550 Extracellular protein 81.3 64 0.0014 32.5 16.7 149 289-444 262-428 (552)
368 smart00028 TPR Tetratricopepti 80.9 3.2 6.9E-05 21.8 3.5 28 414-441 2-29 (34)
369 PF06552 TOM20_plant: Plant sp 80.6 7.4 0.00016 31.8 6.4 64 375-445 64-139 (186)
370 TIGR02508 type_III_yscG type I 80.5 20 0.00042 26.1 9.1 86 226-315 21-106 (115)
371 COG2976 Uncharacterized protei 80.1 34 0.00073 28.6 15.5 56 251-306 132-189 (207)
372 KOG0551 Hsp90 co-chaperone CNS 80.0 9.8 0.00021 34.4 7.5 91 350-440 84-180 (390)
373 PF08311 Mad3_BUB1_I: Mad3/BUB 79.9 14 0.0003 28.5 7.7 42 397-438 81-124 (126)
374 PF14863 Alkyl_sulf_dimr: Alky 79.2 9.1 0.0002 30.1 6.4 64 363-429 57-120 (141)
375 PF10579 Rapsyn_N: Rapsyn N-te 78.7 4.4 9.6E-05 27.8 3.9 46 391-436 18-66 (80)
376 PF07163 Pex26: Pex26 protein; 77.1 39 0.00085 30.0 10.0 87 182-268 90-181 (309)
377 PHA02875 ankyrin repeat protei 76.8 73 0.0016 30.6 14.9 207 20-244 9-229 (413)
378 PF04097 Nic96: Nup93/Nic96; 76.5 96 0.0021 31.8 15.8 18 423-440 437-454 (613)
379 COG4976 Predicted methyltransf 76.1 4.5 9.9E-05 34.3 4.1 58 389-446 5-62 (287)
380 PRK13342 recombination factor 75.5 80 0.0017 30.5 14.4 49 176-224 228-279 (413)
381 TIGR03504 FimV_Cterm FimV C-te 75.3 7 0.00015 23.5 3.7 23 82-104 5-27 (44)
382 KOG3364 Membrane protein invol 74.6 21 0.00045 27.7 6.9 71 344-414 29-106 (149)
383 PRK13800 putative oxidoreducta 74.1 1.4E+02 0.003 32.5 29.5 92 345-439 787-878 (897)
384 PF12862 Apc5: Anaphase-promot 73.9 12 0.00027 26.9 5.6 51 390-440 9-68 (94)
385 cd08819 CARD_MDA5_2 Caspase ac 73.6 29 0.00063 24.5 7.1 39 257-296 48-86 (88)
386 KOG4077 Cytochrome c oxidase, 73.5 19 0.0004 27.5 6.3 45 60-104 68-112 (149)
387 KOG4077 Cytochrome c oxidase, 73.4 27 0.00059 26.6 7.1 59 294-354 67-125 (149)
388 PF09670 Cas_Cas02710: CRISPR- 73.4 78 0.0017 30.1 12.2 53 286-339 141-197 (379)
389 KOG4279 Serine/threonine prote 73.0 61 0.0013 33.1 11.3 172 228-412 181-399 (1226)
390 COG2909 MalT ATP-dependent tra 73.0 1.3E+02 0.0028 31.7 23.0 213 121-336 425-684 (894)
391 PF10345 Cohesin_load: Cohesin 72.7 1.2E+02 0.0026 31.2 30.5 189 39-237 28-252 (608)
392 PF04910 Tcf25: Transcriptiona 72.3 88 0.0019 29.5 13.9 64 378-441 99-167 (360)
393 PF07163 Pex26: Pex26 protein; 72.3 57 0.0012 29.0 9.9 86 283-371 90-182 (309)
394 PRK10941 hypothetical protein; 72.1 18 0.0004 32.2 7.3 67 351-417 185-253 (269)
395 PRK12798 chemotaxis protein; R 71.4 95 0.0021 29.5 25.1 205 258-489 125-347 (421)
396 PRK11619 lytic murein transgly 71.2 1.3E+02 0.0028 31.0 37.4 210 224-434 255-497 (644)
397 KOG4507 Uncharacterized conser 70.9 24 0.00052 34.7 8.0 135 308-444 568-707 (886)
398 cd00280 TRFH Telomeric Repeat 70.8 31 0.00067 28.4 7.4 47 386-433 118-164 (200)
399 PRK13800 putative oxidoreducta 70.8 1.6E+02 0.0035 31.9 29.2 160 166-339 719-880 (897)
400 KOG4642 Chaperone-dependent E3 70.7 60 0.0013 28.2 9.4 82 255-338 20-105 (284)
401 KOG3824 Huntingtin interacting 70.2 11 0.00024 33.5 5.3 62 357-418 126-189 (472)
402 COG3947 Response regulator con 69.9 83 0.0018 28.2 15.0 69 179-248 283-356 (361)
403 PF10579 Rapsyn_N: Rapsyn N-te 69.4 15 0.00032 25.4 4.6 19 350-368 46-64 (80)
404 PF13762 MNE1: Mitochondrial s 69.2 49 0.0011 26.2 8.2 78 12-89 41-128 (145)
405 PF13934 ELYS: Nuclear pore co 68.2 80 0.0017 27.4 12.3 55 117-172 114-168 (226)
406 PF08424 NRDE-2: NRDE-2, neces 68.0 1E+02 0.0022 28.5 14.5 152 328-493 3-171 (321)
407 KOG2063 Vacuolar assembly/sort 67.8 1.7E+02 0.0038 31.1 17.8 221 9-256 477-743 (877)
408 PF11846 DUF3366: Domain of un 67.5 25 0.00054 29.6 7.0 35 376-410 141-175 (193)
409 PF10366 Vps39_1: Vacuolar sor 67.4 44 0.00095 24.9 7.4 27 43-69 41-67 (108)
410 PF11846 DUF3366: Domain of un 67.1 26 0.00056 29.5 7.0 51 323-373 120-170 (193)
411 PF12862 Apc5: Anaphase-promot 66.9 23 0.00049 25.6 5.8 27 383-409 45-71 (94)
412 PF10255 Paf67: RNA polymerase 66.4 48 0.001 31.5 9.0 21 353-373 128-148 (404)
413 COG0735 Fur Fe2+/Zn2+ uptake r 66.4 31 0.00067 27.4 6.8 64 62-126 7-70 (145)
414 cd08819 CARD_MDA5_2 Caspase ac 65.2 38 0.00082 24.0 6.1 62 95-160 21-82 (88)
415 PHA02875 ankyrin repeat protei 64.9 1.4E+02 0.0029 28.8 12.7 208 50-275 8-229 (413)
416 COG4976 Predicted methyltransf 63.7 13 0.00027 31.8 4.2 56 358-413 6-63 (287)
417 PF11663 Toxin_YhaV: Toxin wit 63.5 11 0.00023 29.1 3.5 33 52-86 106-138 (140)
418 PF07720 TPR_3: Tetratricopept 63.0 26 0.00056 19.9 4.4 17 385-401 7-23 (36)
419 COG0790 FOG: TPR repeat, SEL1 62.8 1.2E+02 0.0026 27.4 19.8 77 365-444 173-268 (292)
420 KOG3824 Huntingtin interacting 62.6 14 0.0003 33.0 4.4 54 321-377 126-181 (472)
421 PF12968 DUF3856: Domain of Un 62.0 68 0.0015 24.4 9.4 20 420-439 107-126 (144)
422 COG5159 RPN6 26S proteasome re 62.0 1.2E+02 0.0026 27.2 17.9 92 179-270 129-231 (421)
423 PF10366 Vps39_1: Vacuolar sor 60.2 69 0.0015 23.9 7.8 27 278-304 41-67 (108)
424 KOG4567 GTPase-activating prot 60.0 1.4E+02 0.0029 27.2 10.1 77 96-175 263-349 (370)
425 PF14561 TPR_20: Tetratricopep 59.7 62 0.0013 23.1 8.2 53 378-430 21-75 (90)
426 COG5191 Uncharacterized conser 58.8 25 0.00054 31.6 5.3 79 343-421 103-184 (435)
427 COG2912 Uncharacterized conser 58.3 34 0.00074 30.2 6.1 57 384-440 186-242 (269)
428 KOG0687 26S proteasome regulat 57.4 1.6E+02 0.0034 27.0 13.3 292 158-469 36-348 (393)
429 KOG4567 GTPase-activating prot 56.7 1.6E+02 0.0034 26.8 10.3 73 296-374 263-345 (370)
430 KOG1524 WD40 repeat-containing 56.6 29 0.00062 33.6 5.7 146 346-501 572-726 (737)
431 PF02184 HAT: HAT (Half-A-TPR) 56.0 28 0.0006 19.2 3.3 26 394-420 2-27 (32)
432 cd00280 TRFH Telomeric Repeat 55.5 90 0.0019 25.9 7.5 48 92-139 85-139 (200)
433 KOG0376 Serine-threonine phosp 54.9 24 0.00053 33.7 5.0 103 283-390 11-116 (476)
434 PF12796 Ank_2: Ankyrin repeat 54.6 67 0.0015 22.4 6.5 80 20-110 4-86 (89)
435 PF13934 ELYS: Nuclear pore co 54.6 1.4E+02 0.0031 25.8 13.1 70 317-390 114-183 (226)
436 KOG0403 Neoplastic transformat 54.6 2.1E+02 0.0045 27.6 19.8 328 45-407 218-571 (645)
437 KOG2659 LisH motif-containing 54.2 1.4E+02 0.003 25.8 8.8 92 278-372 28-128 (228)
438 PF13929 mRNA_stabil: mRNA sta 53.4 1.7E+02 0.0037 26.3 14.8 157 97-270 98-263 (292)
439 PF04190 DUF410: Protein of un 52.6 1.7E+02 0.0037 26.1 20.0 83 243-340 88-170 (260)
440 PF11838 ERAP1_C: ERAP1-like C 52.5 1.9E+02 0.0041 26.6 19.2 111 327-438 146-262 (324)
441 PF14669 Asp_Glu_race_2: Putat 51.6 1.4E+02 0.0031 24.9 13.8 40 70-109 2-45 (233)
442 PF11768 DUF3312: Protein of u 51.4 2.6E+02 0.0056 27.8 12.4 55 250-304 413-472 (545)
443 PF08311 Mad3_BUB1_I: Mad3/BUB 51.0 1.1E+02 0.0024 23.5 9.6 81 53-136 38-124 (126)
444 PF09477 Type_III_YscG: Bacter 51.0 1E+02 0.0022 22.9 10.8 79 225-306 21-99 (116)
445 KOG2422 Uncharacterized conser 50.9 2.7E+02 0.0059 27.9 14.5 114 124-237 251-405 (665)
446 smart00777 Mad3_BUB1_I Mad3/BU 50.6 66 0.0014 24.8 5.9 40 398-437 82-123 (125)
447 PF14689 SPOB_a: Sensor_kinase 50.2 34 0.00074 22.4 3.8 21 282-302 29-49 (62)
448 PRK13184 pknD serine/threonine 50.2 3.7E+02 0.008 29.2 23.7 158 244-407 687-868 (932)
449 KOG2582 COP9 signalosome, subu 49.8 2.2E+02 0.0048 26.6 13.7 128 8-140 73-212 (422)
450 PF11848 DUF3368: Domain of un 49.7 59 0.0013 19.9 5.3 34 286-319 12-45 (48)
451 KOG1308 Hsp70-interacting prot 49.6 18 0.00039 32.9 3.1 86 323-410 126-213 (377)
452 cd08326 CARD_CASP9 Caspase act 49.5 80 0.0017 22.2 5.8 30 160-189 46-75 (84)
453 PRK10564 maltose regulon perip 49.2 38 0.00083 30.4 5.0 41 277-317 258-298 (303)
454 PF11663 Toxin_YhaV: Toxin wit 48.8 23 0.0005 27.4 3.1 33 185-219 105-137 (140)
455 KOG0275 Conserved WD40 repeat- 48.7 2.1E+02 0.0045 25.9 11.9 25 473-497 158-182 (508)
456 KOG0545 Aryl-hydrocarbon recep 48.4 1.9E+02 0.0041 25.4 9.9 68 349-416 232-301 (329)
457 PRK09462 fur ferric uptake reg 47.8 98 0.0021 24.6 6.9 61 66-127 7-68 (148)
458 PF11817 Foie-gras_1: Foie gra 47.7 73 0.0016 28.1 6.7 18 320-337 187-204 (247)
459 KOG2422 Uncharacterized conser 46.8 2E+02 0.0043 28.7 9.5 93 48-140 349-448 (665)
460 KOG0292 Vesicle coat complex C 46.6 25 0.00055 36.3 3.9 44 359-405 655-698 (1202)
461 KOG2581 26S proteasome regulat 46.1 2.7E+02 0.0059 26.5 11.8 63 349-411 211-279 (493)
462 PF04034 DUF367: Domain of unk 45.9 1.4E+02 0.003 23.0 7.6 58 347-404 66-124 (127)
463 KOG0292 Vesicle coat complex C 45.5 2.9E+02 0.0063 29.3 10.8 157 116-304 625-781 (1202)
464 PRK10564 maltose regulon perip 45.3 45 0.00097 30.0 4.8 37 177-213 259-295 (303)
465 KOG4814 Uncharacterized conser 44.9 2.6E+02 0.0056 28.4 10.0 82 359-440 366-455 (872)
466 PF14689 SPOB_a: Sensor_kinase 44.3 63 0.0014 21.1 4.4 22 215-236 28-49 (62)
467 PRK11639 zinc uptake transcrip 43.9 1.2E+02 0.0025 24.9 6.9 60 67-127 17-76 (169)
468 PF04781 DUF627: Protein of un 43.5 1.4E+02 0.003 22.4 6.9 98 319-436 4-101 (111)
469 PF09477 Type_III_YscG: Bacter 43.3 1.4E+02 0.003 22.3 10.7 39 91-130 21-59 (116)
470 PF10255 Paf67: RNA polymerase 43.1 1.4E+02 0.003 28.6 8.0 54 149-202 127-191 (404)
471 KOG1114 Tripeptidyl peptidase 43.0 4.6E+02 0.0099 28.3 13.2 40 322-361 1242-1281(1304)
472 KOG2300 Uncharacterized conser 42.5 3.4E+02 0.0074 26.6 29.0 358 82-441 13-473 (629)
473 COG5108 RPO41 Mitochondrial DN 42.1 2.2E+02 0.0048 29.0 9.2 72 116-187 33-115 (1117)
474 KOG0686 COP9 signalosome, subu 41.6 3.2E+02 0.0069 26.0 15.4 61 177-237 152-214 (466)
475 cd08326 CARD_CASP9 Caspase act 41.5 1.2E+02 0.0027 21.3 6.3 38 257-294 42-79 (84)
476 COG2256 MGS1 ATPase related to 40.4 3.4E+02 0.0073 26.0 13.3 52 173-224 244-298 (436)
477 KOG3807 Predicted membrane pro 40.2 3E+02 0.0065 25.3 11.1 57 316-372 280-336 (556)
478 KOG0128 RNA-binding protein SA 39.7 4.8E+02 0.01 27.5 26.3 130 75-205 112-261 (881)
479 COG4941 Predicted RNA polymera 38.9 3.2E+02 0.007 25.3 11.4 117 291-412 271-398 (415)
480 KOG4521 Nuclear pore complex, 38.9 5.8E+02 0.013 28.3 14.7 79 314-394 986-1069(1480)
481 KOG0686 COP9 signalosome, subu 38.8 3.5E+02 0.0077 25.8 14.4 58 146-203 152-215 (466)
482 PF11817 Foie-gras_1: Foie gra 38.8 1.1E+02 0.0024 27.0 6.5 76 162-237 163-245 (247)
483 PF09373 PMBR: Pseudomurein-bi 38.4 66 0.0014 17.8 3.2 25 472-496 7-31 (33)
484 PF12583 TPPII_N: Tripeptidyl 38.4 1.2E+02 0.0026 23.4 5.4 39 388-426 85-123 (139)
485 KOG4279 Serine/threonine prote 38.2 1.2E+02 0.0026 31.2 6.9 27 278-304 203-229 (1226)
486 KOG2659 LisH motif-containing 38.2 2.7E+02 0.0058 24.1 9.7 97 307-406 22-130 (228)
487 smart00777 Mad3_BUB1_I Mad3/BU 37.9 1.9E+02 0.0041 22.3 8.1 41 95-135 82-123 (125)
488 TIGR02270 conserved hypothetic 37.7 3.9E+02 0.0083 25.8 25.4 57 244-301 160-216 (410)
489 cd08332 CARD_CASP2 Caspase act 37.6 1.4E+02 0.003 21.4 5.6 27 160-186 50-76 (90)
490 PRK11639 zinc uptake transcrip 37.1 1.6E+02 0.0034 24.2 6.6 66 27-92 11-76 (169)
491 KOG2034 Vacuolar sorting prote 37.1 5.4E+02 0.012 27.4 24.2 173 117-301 364-555 (911)
492 PF10516 SHNi-TPR: SHNi-TPR; 36.7 87 0.0019 18.1 3.7 27 414-440 2-28 (38)
493 COG0735 Fur Fe2+/Zn2+ uptake r 36.6 2.2E+02 0.0047 22.6 7.4 43 318-361 27-69 (145)
494 COG5191 Uncharacterized conser 36.3 86 0.0019 28.4 5.1 69 375-443 103-172 (435)
495 cd07153 Fur_like Ferric uptake 36.2 98 0.0021 23.2 5.1 43 84-126 8-50 (116)
496 PRK13341 recombination factor 35.8 5.5E+02 0.012 27.1 14.7 61 186-246 269-334 (725)
497 KOG1497 COP9 signalosome, subu 35.6 3.5E+02 0.0077 24.8 14.5 22 352-373 149-170 (399)
498 PF10475 DUF2450: Protein of u 35.3 3.5E+02 0.0075 24.6 9.9 52 150-203 104-155 (291)
499 PF02847 MA3: MA3 domain; Int 35.0 1.2E+02 0.0026 22.5 5.4 21 181-201 8-28 (113)
500 TIGR02270 conserved hypothetic 34.8 4.3E+02 0.0093 25.5 26.4 88 243-337 190-278 (410)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-77 Score=621.77 Aligned_cols=497 Identities=35% Similarity=0.647 Sum_probs=462.9
Q ss_pred CcccCCCCChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHH
Q 010575 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFP 80 (507)
Q Consensus 1 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 80 (507)
|++.|+.||+.++|.|+.+|++.|++++|.++|+.|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~ 292 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHh----
Q 010575 81 FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAK---- 156 (507)
Q Consensus 81 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~---- 156 (507)
.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|... |..+|++++.+|++
T Consensus 293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK--DAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC--CeeeHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999888653 55555555555555
Q ss_pred ------------------------------------------------------------------cCCHHHHHHHHHhc
Q 010575 157 ------------------------------------------------------------------VGDLNNARALFELM 170 (507)
Q Consensus 157 ------------------------------------------------------------------~~~~~~A~~~~~~~ 170 (507)
.|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 55555555555555
Q ss_pred CCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 010575 171 TEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNA 250 (507)
Q Consensus 171 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 250 (507)
.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++
T Consensus 451 ~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 556667777777777777777788888888865 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 330 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 330 (507)
|+.+|++.|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 999999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 331 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.|+...+++++++|
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 99999999777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 010575 411 HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAE 490 (507)
Q Consensus 411 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 490 (507)
+++..|..|+++|.+.|+|++|.++.+.|.+.|+++.||++|+++++.+|.|..++.+||+..+|+..|+++..+|++.|
T Consensus 689 ~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 768 (857)
T PLN03077 689 NSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG 768 (857)
T ss_pred CCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccc
Q 010575 491 HLQNEFSGVLE 501 (507)
Q Consensus 491 ~~~~~~~~~~~ 501 (507)
|.|++..++|+
T Consensus 769 ~~~~~~~~~~~ 779 (857)
T PLN03077 769 LAGSESSSMDE 779 (857)
T ss_pred cCCCcchhccc
Confidence 99998877754
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-77 Score=605.03 Aligned_cols=495 Identities=28% Similarity=0.497 Sum_probs=473.3
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHhccCC----CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHH
Q 010575 5 GLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKS----KPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFP 80 (507)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 80 (507)
++.||..+|+.++.+|++.++++.|.+++..|. .||..+||.++..|++.|+++.|.++|++|.+ ||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 478899999999999999999999988888775 38888999999999999999999999999864 8889999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC--CCChhhHHHHHHHHHhcC
Q 010575 81 FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR--VWNVAVWNTMVAGYAKVG 158 (507)
Q Consensus 81 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~ 158 (507)
.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+... .||..+|++++.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999988888766 568999999999999999
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010575 159 DLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 238 (507)
++++|.++|+.|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+
T Consensus 274 ~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010575 239 YGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 318 (507)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 318 (507)
.|+.||..++++|+.+|++.|++++|.++|++|.++|..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010575 319 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++++.+|...|+.+.|
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999877999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHH
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQI 478 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
..++++++++.|++...|..|+.+|.+.|+|++|.+++++|.+.|+.+.||++|+++++.+|.|..++..||...+++..
T Consensus 514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~ 593 (697)
T PLN03081 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQK 593 (697)
T ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccCCCccccccc
Q 010575 479 LCKINGQMKFAEHLQNEFSGVLESD 503 (507)
Q Consensus 479 l~~~~~~~~~~g~~~~~~~~~~~~~ 503 (507)
+.++..+|++.||.|++..++|+.+
T Consensus 594 l~~l~~~~~~~gy~~~~~~~~~~~~ 618 (697)
T PLN03081 594 LDELMKEISEYGYVAEENELLPDVD 618 (697)
T ss_pred HHHHHHHHHHcCCCCCcchhhcccc
Confidence 9999999999999999999887654
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-62 Score=498.63 Aligned_cols=479 Identities=14% Similarity=0.208 Sum_probs=345.5
Q ss_pred cccCC-CCChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHH
Q 010575 2 IVRGL-DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFP 80 (507)
Q Consensus 2 ~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 80 (507)
.+.|+ +++..+++.++..|++.|.+++|.++|+.|..||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+
T Consensus 397 ~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tyn 476 (1060)
T PLN03218 397 EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYT 476 (1060)
T ss_pred HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34553 56666777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC--CCChhhHHHHHHHHHhcC
Q 010575 81 FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR--VWNVAVWNTMVAGYAKVG 158 (507)
Q Consensus 81 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~~ 158 (507)
.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|... .||..+|+.+|.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 777777777777777777777777777777777777777777777777777777777655 567777777777777777
Q ss_pred CHHHHHHHHHhcC------CCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010575 159 DLNNARALFELMT------EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWI 232 (507)
Q Consensus 159 ~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 232 (507)
++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|..+
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 7777777777774 3677777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 010575 233 HNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVK 308 (507)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 308 (507)
|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 77777777777777777777777777777777777777764 56677777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC---CCCCCHHHHHHH
Q 010575 309 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWGSL 385 (507)
Q Consensus 309 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l 385 (507)
||..+|+.+|.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|++++|.++++.| ++.||..+|+.+
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 77777777777777777777777777777765 77777777777777777777777777777777 567777777777
Q ss_pred HHHHHH----c-------------------CCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 386 LAASNI----Y-------------------GDVELGECALQHLIKL--EPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 386 ~~~~~~----~-------------------g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+..|.+ . +..+.|..+|++|++. .|+ ..+|..++.++.+.+..+.+..+++.|.
T Consensus 796 Iglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 796 TGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 755432 1 1235677777777553 344 5566666666667777777777777665
Q ss_pred hCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCC
Q 010575 441 DMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEF 496 (507)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~ 496 (507)
..+..+........+. +.... ..+... +.++|.+.|..|+..
T Consensus 875 ~~~~~~~~~~y~~Li~--------g~~~~--~~~A~~----l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 875 ISADSQKQSNLSTLVD--------GFGEY--DPRAFS----LLEEAASLGVVPSVS 916 (1060)
T ss_pred cCCCCcchhhhHHHHH--------hhccC--hHHHHH----HHHHHHHcCCCCCcc
Confidence 4443322111000000 00111 123344 455889999988764
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-62 Score=510.64 Aligned_cols=435 Identities=31% Similarity=0.506 Sum_probs=361.3
Q ss_pred cccCCCCChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHH
Q 010575 2 IVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPF 81 (507)
Q Consensus 2 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (507)
++.|..++..++|.|+..|++.|+++.|.++|++|++||..+||++|.+|++.|++++|+.+|++|...|+.||..||+.
T Consensus 113 ~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ 192 (857)
T PLN03077 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192 (857)
T ss_pred HHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC---------------------
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR--------------------- 140 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 140 (507)
++++|+..+++..+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|...
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHH
Confidence 99988888888888888888888888888888888888888888888887777777543
Q ss_pred -----------------------------------------------CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 010575 141 -----------------------------------------------VWNVAVWNTMVAGYAKVGDLNNARALFELMTEK 173 (507)
Q Consensus 141 -----------------------------------------------~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 173 (507)
.||..+|++++.+|++.|++++|.++|++|..|
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 134455666666666788888888888888889
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 253 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 253 (507)
|..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+.
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 010575 254 MYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRY 333 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 333 (507)
+|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.++
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 999999999999999999999999999999999999999999999999986 5899999999999999998888888888
Q ss_pred HHHhHHhhCCCCChh------------------------------HHHHHHHHHhhcCCHHHHHHHHhhC---CCCCCHH
Q 010575 334 FNIMKSRYGIEPKIE------------------------------QYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAA 380 (507)
Q Consensus 334 ~~~~~~~~~~~~~~~------------------------------~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~ 380 (507)
+..+.+. |+.++.. +|+.++.+|++.|+.++|.++|++| +..||..
T Consensus 512 ~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 512 HAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 8887765 6655544 4555555555555555555555555 3455555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIK---LEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
||+.++.+|.+.|++++|.++|+.|.+ +.|+ ..+|..++++|.+.|++++|.+++++|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 555555555555555555555555542 2233 445555555555555555555555555
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.5e-62 Score=495.45 Aligned_cols=440 Identities=17% Similarity=0.232 Sum_probs=410.9
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK----PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFV 82 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 82 (507)
.||..+|+.++.+|++.|+++.|.++|+.|.+ ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 39999999999999999999999999999864 89999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC----CCChhhHHHHHHHHHhcC
Q 010575 83 LKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR----VWNVAVWNTMVAGYAKVG 158 (507)
Q Consensus 83 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~li~~~~~~~ 158 (507)
|.+|++.|++++|.++|+.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|... .||..+|++++.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999752 689999999999999999
Q ss_pred CHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010575 159 DLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHN 234 (507)
Q Consensus 159 ~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 234 (507)
++++|.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999985 67799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010575 235 YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK----NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPN 310 (507)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 310 (507)
.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|+++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999995 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----c-------------------CCHHHHH
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----A-------------------GYLQEAE 367 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~ 367 (507)
..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++++..|.+ + +..++|.
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 999999999999999999999999999987 999999999999876432 1 2246799
Q ss_pred HHHhhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 368 KLLRRM---PFEANAAIWGSLLAASNIYGDVELGECALQHLI-KLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 368 ~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.+|++| ++.||..||+.++.++...+..+.+..+++.+. .-.+.+..+|..|++.+.+. .++|..++++|...|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999 789999999999987788889999988888773 34556688999999987432 368999999999999
Q ss_pred CccCCc
Q 010575 444 VKKMPG 449 (507)
Q Consensus 444 ~~~~~~ 449 (507)
+.+...
T Consensus 911 i~p~~~ 916 (1060)
T PLN03218 911 VVPSVS 916 (1060)
T ss_pred CCCCcc
Confidence 976654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.6e-57 Score=457.76 Aligned_cols=399 Identities=20% Similarity=0.325 Sum_probs=382.2
Q ss_pred CcccCCCCChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHH
Q 010575 1 MIVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFP 80 (507)
Q Consensus 1 m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 80 (507)
|.+.|+.||+.+|+.|+..|++.|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCH
Q 010575 81 FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDL 160 (507)
Q Consensus 81 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 160 (507)
.++.+|++.|+.+.+.+++..+.+.|+.||..+++.|+++|++.|++++|.++|++|... |..+|++++.+|++.|++
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK--TTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999999999999999999876 999999999999999999
Q ss_pred HHHHHHHHhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010575 161 NNARALFELMT----EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 236 (507)
Q Consensus 161 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 236 (507)
++|.++|++|. .||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++++|++.|++++|..+|+.|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999995 58999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH
Q 010575 237 EQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMER-ARVKPNE 311 (507)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~ 311 (507)
. .+|..+|+++|.+|++.|+.++|.++|++|.+ ||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+.
T Consensus 387 ~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 P----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred C----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 6 57899999999999999999999999999974 8999999999999999999999999999986 6999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 389 (507)
.+|+.++.+|++.|++++|.++++++ +..|+..+|++|+.+|...|+++.|..+++++ ...| +..+|..++..|
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 99999999999999999999998876 67899999999999999999999999999988 5566 467999999999
Q ss_pred HHcCCHHHHHHHHHHHhccC
Q 010575 390 NIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~ 409 (507)
.+.|++++|.++++.|.+.+
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999996543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.8e-30 Score=274.36 Aligned_cols=419 Identities=12% Similarity=0.026 Sum_probs=193.1
Q ss_pred HHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHcc
Q 010575 13 LSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKL 89 (507)
Q Consensus 13 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 89 (507)
...++..|.+.|++++|.++++.+.. ++...|..+...+...|++++|...|+++.+.. +.+...+..+...+...
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC
Confidence 33444455555555555555554432 233445555555555555555555555554421 11233344444445555
Q ss_pred CCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010575 90 STIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFE 168 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~ 168 (507)
|++++|.+.++.+.+.++. +..++..+...+.+.|++++|...++++....| +...+..++..+...|++++|..+++
T Consensus 513 g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555555555544322 344444555555555555555555555444433 33444445555555555555555555
Q ss_pred hcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch
Q 010575 169 LMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV 245 (507)
Q Consensus 169 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 245 (507)
.+.+ .+...|..++..+...|++++|...|+.+.+.. +.+...+..+..++.+.|++++|..+++.+.+.. +.+.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 4432 233444555555555555555555555554432 2233344444444555555555555555444432 2334
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 246 PLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
..+..++..+...|++++|..+++.+.+ .+...+..+...+...|++++|...|+++... .|+..++..++.++.
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHH
Confidence 4444444445555555555555444433 12334444444444444555555544444443 222233344444444
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGEC 400 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (507)
..|++++|.+.++.+.+ ..+.+...+..+...|.+.|++++|...|+++ . ..+++..+..+...+...|+ .+|+.
T Consensus 748 ~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 44444444444444443 22233444444444444444444444444444 1 11233344444444444444 33444
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.++++++..|+++..+..++.++...|++++|.++++++.
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 825 YAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-29 Score=268.43 Aligned_cols=426 Identities=13% Similarity=0.024 Sum_probs=332.4
Q ss_pred CChHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHH
Q 010575 8 QNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLK 84 (507)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 84 (507)
.+...+..+...+...|++++|.+.|+.... .+...+..++..+.+.|++++|..+++.+... .++++.++..+..
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 473 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGA 473 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHH
Confidence 3556677777888888888888888877543 23445666777888888888888888888763 3456677888888
Q ss_pred HHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHH
Q 010575 85 AVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNA 163 (507)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A 163 (507)
.+...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+++....| +..++..+...+.+.|+.++|
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888776533 556677788888888888888888888877766 667788888888888888888
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 010575 164 RALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG 240 (507)
Q Consensus 164 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 240 (507)
...++++.. .+...+..++..+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...++.+.+..
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888754 345567778888888888888888888887653 4566778888888888888888888888887765
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010575 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI 317 (507)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 317 (507)
+.+...+..+..+|...|++++|...|+++.+ .+..++..++..+...|++++|..+++.+.+.+ +++...+..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHH
Confidence 44566777788888888888888888887764 345678888888888888888888888887764 4466677777
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCH
Q 010575 318 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDV 395 (507)
Q Consensus 318 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 395 (507)
...+...|++++|...|+.+... .|+..++..++.++.+.|++++|.+.++++ ....+...+..+...|...|+.
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 88888888888888888888753 455567777888888888888888888877 2334666777888888888888
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 396 ELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
++|...|+++++..|+++.++..++.++.+.|+ ++|++++++....
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 888888888888888888888888888888888 7788888887654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=6.7e-22 Score=211.10 Aligned_cols=427 Identities=15% Similarity=0.077 Sum_probs=294.0
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC--CCcccH-----------------HHHHHHHHcCCCchHHHHHHHHH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--PDVYLY-----------------NTTIKALCQTDNPLNAVILYNKI 67 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~li~~~~~~~~~~~a~~~~~~m 67 (507)
+.|+.++..++..+.+.|+.++|.+.+++..+ |+...+ ..+.+.+.+.|++++|+..|+.+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34677777888888888888888888887654 332221 22334677888888888888888
Q ss_pred HHcCCCCCccc-HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCC---
Q 010575 68 QASALRPDNYS-FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWN--- 143 (507)
Q Consensus 68 ~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--- 143 (507)
.+.+ +|+... ...........|+.++|.+.++.+.+..+. +...+..+...+...|++++|+..++++....+.
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 7642 233211 111112223457888888888888887543 5667777888888888888888888876432110
Q ss_pred ------------------hhhH----------------------------------HHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 144 ------------------VAVW----------------------------------NTMVAGYAKVGDLNNARALFELMT 171 (507)
Q Consensus 144 ------------------~~~~----------------------------------~~li~~~~~~~~~~~A~~~~~~~~ 171 (507)
...+ ......+...|++++|+..|++..
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0000 011334556788888888888776
Q ss_pred C--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-HHHH------------HHHHHHHhccCCHHHHHHHHHH
Q 010575 172 E--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAM------------LAALSACAQLGAVELGEWIHNY 235 (507)
Q Consensus 172 ~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~------------~~ll~~~~~~~~~~~a~~~~~~ 235 (507)
+ | +...+..+..++.+.|++++|+..|++..+...... ...+ ......+.+.|++++|...+++
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4 3 567778888888888888888888888876532211 1111 1223456677888888888888
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHH--------------------------------
Q 010575 236 IEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWT-------------------------------- 280 (507)
Q Consensus 236 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~-------------------------------- 280 (507)
+.+.. +.+...+..+..+|...|++++|++.|+++.+ | +...+.
T Consensus 377 Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~ 455 (1157)
T PRK11447 377 ARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDI 455 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHH
Confidence 88765 44556666778888888888888888887664 2 222221
Q ss_pred ----------HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhH
Q 010575 281 ----------TMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ 349 (507)
Q Consensus 281 ----------~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 349 (507)
.+...+...|++++|+..|++..+. .| +...+..+...+.+.|++++|...++++.+.. +.+...
T Consensus 456 ~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~ 531 (1157)
T PRK11447 456 ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQ 531 (1157)
T ss_pred HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHH
Confidence 2234455678999999999998876 34 45677778888999999999999999987531 223333
Q ss_pred HHHH--------------------------------------------HHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 010575 350 YGCM--------------------------------------------IDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 385 (507)
Q Consensus 350 ~~~l--------------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 385 (507)
+..+ ...+...|+.++|.++++.-+ +++..+..+
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~L 609 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHH
Confidence 2222 233445566666666665332 344566778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
...+...|++++|+..|+++++..|+++.++..++.+|...|++++|++.++.+...
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888999999999999999999999999999999999999999999999999988654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=3.5e-22 Score=213.28 Aligned_cols=411 Identities=13% Similarity=0.024 Sum_probs=328.7
Q ss_pred HHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcc---cHH----------
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNY---SFP---------- 80 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~---------- 80 (507)
...+...|++++|+..|++... .+...+..+...+.+.|++++|+..|++..+.. |+.. .+.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHH
Confidence 4566788999999999988643 367788899999999999999999999988743 4322 121
Q ss_pred --HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhc
Q 010575 81 --FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKV 157 (507)
Q Consensus 81 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~ 157 (507)
.....+.+.|++++|...|+++++..+. +...+..+..++...|++++|++.|+++....| +...+..+...+. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 1234567899999999999999988643 567788889999999999999999999998877 4566777777764 4
Q ss_pred CCHHHHHHHHHhcCCCC------------hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 010575 158 GDLNNARALFELMTEKN------------VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 225 (507)
Q Consensus 158 ~~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 225 (507)
++.++|+..++.+.... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 67899999998776421 2235567778889999999999999998864 2355677788889999999
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Ch---------hHHHHHHHHHHHcCCh
Q 010575 226 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK----SV---------ITWTTMIAGLALHGLG 292 (507)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~ 292 (507)
+++|...++.+.+.. +.+...+..+...+...++.++|...++.+... +. ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998764 344555555666678899999999999988642 11 1123456678899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhh
Q 010575 293 REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 372 (507)
Q Consensus 293 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (507)
++|..+++. .+++...+..+...+.+.|++++|+..|+++.+. -+.+...+..++..|...|++++|.+.++.
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999872 2445667778889999999999999999999973 345678899999999999999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 373 M-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG------NYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 373 ~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
. ...| +...+..+..++...|++++|.++++++++..|+++. .+..++.++...|++++|++.+++..
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 3444 4556777888899999999999999999988776543 56677999999999999999999985
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=9.3e-24 Score=192.37 Aligned_cols=384 Identities=14% Similarity=0.133 Sum_probs=326.1
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHH-HHHHHHH
Q 010575 42 YLYNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVH-VVAALIQ 119 (507)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~ 119 (507)
.+|..+...+-..|++.+|+..|+.+.+ +.| ....|..+..++...|+.+.|.+.|.+.++.+ |+.. ....+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 5688899999999999999999999998 446 46778899999999999999999999998864 4433 3344555
Q ss_pred HHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhCCChhHHH
Q 010575 120 MYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEKNV---ISWTTLIAGYAQMDQPNEAI 195 (507)
Q Consensus 120 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~ 195 (507)
.+-..|++++|...|.+..+..| -...|+.|...+-..|+...|+..|++..+-|+ .+|-.|...|...+.+++|.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 56668999999999999888877 467899999999999999999999999987544 67889999999999999999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 010575 196 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-- 273 (507)
Q Consensus 196 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 273 (507)
..|.+..... +.....+..+...|-.+|.+|.|+..+++..+.. +.-...|+.|..++-..|+..+|...|.+...
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9999987743 2345667777778899999999999999998775 34477899999999999999999999998875
Q ss_pred -CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhHH
Q 010575 274 -KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQY 350 (507)
Q Consensus 274 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 350 (507)
....+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-++|++++|+..+++.. .+.|+ ...|
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~ 425 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADAL 425 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHH
Confidence 34578899999999999999999999998874 554 3678899999999999999999999998 66777 5789
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
+.+...|...|+.+.|.+.+.++ .+.|. ...++.|...|...|+..+|++.|+.++++.|+.+.++..++.++--..+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence 99999999999999999999988 66664 45788999999999999999999999999999999999999988877777
Q ss_pred chHHHHHH
Q 010575 429 WNESGKIR 436 (507)
Q Consensus 429 ~~~A~~~~ 436 (507)
|.+--+-+
T Consensus 506 w~D~d~~~ 513 (966)
T KOG4626|consen 506 WTDYDKRM 513 (966)
T ss_pred ccchHHHH
Confidence 76643333
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.9e-23 Score=190.33 Aligned_cols=420 Identities=11% Similarity=0.051 Sum_probs=333.1
Q ss_pred HHHHHHccCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc
Q 010575 16 FIDSCSSLGFSDYAYSIFTHKSK--P-DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI 92 (507)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 92 (507)
|.+-.-+.|++.+|++.-...-. | +....-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchH
Confidence 33444455666666654332211 1 1111112223344444454443332222221 122456788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhH-HHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 93 ELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVW-NTMVAGYAKVGDLNNARALFELMT 171 (507)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~A~~~~~~~~ 171 (507)
+.|+..++.+++..++ ....|..+..++...|+.+.|.+.|.+..+..|+.... +.+...+...|++++|...|.+..
T Consensus 133 ~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 133 QDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI 211 (966)
T ss_pred HHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence 9999999999987644 67889999999999999999999999999888855443 445556666899999999998877
Q ss_pred CCC---hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhH
Q 010575 172 EKN---VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL 247 (507)
Q Consensus 172 ~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 247 (507)
+.+ ..+|+.|...+...|+...|+..|++.++. .|+ ...|..+...|...+.++.|...+.+..... +....+
T Consensus 212 ~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a 288 (966)
T KOG4626|consen 212 ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVA 288 (966)
T ss_pred hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhh
Confidence 533 367999999999999999999999999874 444 4578888999999999999999998887654 344667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 010575 248 NNALIDMYAKSGKIGKALQVFENMKN--KS-VITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCH 323 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 323 (507)
+..+...|...|.++.|+..|++..+ |+ ...|+.|..++-..|+..+|...+.+.... .| -..+.+.|...+..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHH
Confidence 77788889999999999999999876 33 369999999999999999999999999886 44 45788899999999
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYGDVELGEC 400 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 400 (507)
.|.++.|..+|....+ +.|. ...++.|...|-++|++++|+..|+++ .++|+. ..++.+...|...|+...|++
T Consensus 367 ~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred hccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 9999999999999985 3454 567889999999999999999999988 778864 589999999999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
.+.+++.++|.-..++..|+.+|...|+..+|+.-++...+-...
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999765544
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.3e-21 Score=196.41 Aligned_cols=391 Identities=13% Similarity=0.011 Sum_probs=291.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
+......+.+.|++++|+..|++.+. +.|++..|..+..++...|++++|...++..++..+. +...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 44556678888999999999999887 5688888888888899999999999999998887543 56778888899999
Q ss_pred cCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------------C
Q 010575 124 CKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE-----------------------------K 173 (507)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----------------------------~ 173 (507)
.|++++|+..|..+....+ +......++..+........+...++.-.. .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999887766543322 111111111111111111222222211111 0
Q ss_pred Ch---hHHHHHHHH---HHhCCChhHHHHHHHHHhHCC-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch
Q 010575 174 NV---ISWTTLIAG---YAQMDQPNEAITLFRRMQVEN-VKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV 245 (507)
Q Consensus 174 ~~---~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 245 (507)
+. ..+..+... ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...++...+.. +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 00 011111111 123468999999999998765 233 34567777888889999999999999998764 3446
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 246 PLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
..|..+...+...|++++|...|+.+.+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 6788889999999999999999998765 356789999999999999999999999998863 235677778888999
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCH-H-------HHHHHHHHHHHcC
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-A-------IWGSLLAASNIYG 393 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~g 393 (507)
+.|++++|+..|++.... .+.+...++.+...+...|++++|.+.|++. ...|+. . .++.....+...|
T Consensus 445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 999999999999999863 3456788999999999999999999999986 333321 1 1122222334579
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
++++|..+++++++++|++..++..++.++.+.|++++|+++|++..+
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999998999999999999999999999999864
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.6e-19 Score=184.65 Aligned_cols=213 Identities=14% Similarity=0.032 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRM 302 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 302 (507)
+.++|...+....... |+......+...+...|++++|...|+.+.. ++...+..+...+.+.|++++|...+++.
T Consensus 491 ~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qA 568 (987)
T PRK09782 491 LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQA 568 (987)
T ss_pred CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444444443332 3333322334444577888888888776654 33445566677778888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHH
Q 010575 303 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAA 380 (507)
Q Consensus 303 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~ 380 (507)
.+.. +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++. ...| +..
T Consensus 569 L~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~ 644 (987)
T PRK09782 569 EQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN 644 (987)
T ss_pred HhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 7753 223333333444455668999999999988843 567888889999999999999999999988 4555 556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|+..+++..+..
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 778888889999999999999999999999999999999999999999999999999986443
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=2.7e-19 Score=182.84 Aligned_cols=400 Identities=10% Similarity=0.003 Sum_probs=224.6
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVL 83 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 83 (507)
+.++....-.+......|+.++|+++|.+... .+...+..+...+...|++++|..+|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34555666677778888888888888877653 333457888888888888888888888877732 22355566677
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHH
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~ 162 (507)
..+...|++++|...+++.++..+. +.. +..+..++...|++++|+..++++....| +...+..+...+...+..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 7778888888888888888877433 445 77778888888888888888888888877 45556667777777788888
Q ss_pred HHHHHHhcCCCChh--------HHHHHHHHHHh-----CCCh---hHHHHHHHHHhHC-CCCCCHH-HHH----HHHHHH
Q 010575 163 ARALFELMTEKNVI--------SWTTLIAGYAQ-----MDQP---NEAITLFRRMQVE-NVKPDEI-AML----AALSAC 220 (507)
Q Consensus 163 A~~~~~~~~~~~~~--------~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~ll~~~ 220 (507)
|++.++.... ++. ....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+.++
T Consensus 169 Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 8888877665 211 11112222211 1123 5566666666543 1122211 110 112233
Q ss_pred hccCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCCh
Q 010575 221 AQLGAVELGEWIHNYIEQYGLN-TIVPLNNALIDMYAKSGKIGKALQVFENMKNKS-------VITWTTMIAGLALHGLG 292 (507)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~ 292 (507)
...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+.+.+.+ ......+..++...|++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4456666666666666655421 211 11223455666666666666666554321 12233444455566666
Q ss_pred HHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 010575 293 REALDMFSRMERARV-----------KPNE---ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 358 (507)
Q Consensus 293 ~~A~~~~~~m~~~g~-----------~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (507)
++|..+++++..... .|+. ..+..+...+...|++++|+.+++++.. ..+.+...+..+...+.
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 666666665554310 1111 1223333444445555555555555543 22333444444455555
Q ss_pred hcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 359 RAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
..|++++|++.++++ ...|+ ...+...+..+...|++++|+.+++++++..|+++
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 555555555555544 22332 23333344444445555555555555555555543
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=5.5e-21 Score=182.37 Aligned_cols=299 Identities=14% Similarity=0.079 Sum_probs=201.7
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-C------hhHHHHHHHHHHhCC
Q 010575 118 IQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEK-N------VISWTTLIAGYAQMD 189 (507)
Q Consensus 118 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~~ 189 (507)
...+...|++++|...|.++....| +..++..+...+...|++++|..+++.+... + ...+..++..|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3445667888888888888877766 4446666666667777777777776665531 1 134555666666666
Q ss_pred ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 010575 190 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 269 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 269 (507)
++++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666665542 23445555555566666666666666555554432111000
Q ss_pred hcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC--h
Q 010575 270 NMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK--I 347 (507)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 347 (507)
....+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ .
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~ 249 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLS 249 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHH
Confidence 01123456666777788888888888877653 223456677778888888888888888888753 233 3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH-
Q 010575 348 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI- 425 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~- 425 (507)
..+..++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|..+++++++..|++. .+..+...+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~ 328 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhc
Confidence 56777888888888899888888887 4567777778888888899999999999999988888865 44444444443
Q ss_pred --cCCchHHHHHHHHHHhCCCccCCc
Q 010575 426 --LGRWNESGKIRKVMRDMGVKKMPG 449 (507)
Q Consensus 426 --~g~~~~A~~~~~~~~~~~~~~~~~ 449 (507)
.|+.++++.+++++...++.+.|.
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCCCC
Confidence 558899999999998877777765
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.1e-19 Score=181.85 Aligned_cols=329 Identities=12% Similarity=0.006 Sum_probs=208.8
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhc
Q 010575 79 FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKV 157 (507)
Q Consensus 79 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~ 157 (507)
...++..+.+.|+++.|..+++..+...+.+ ......++.+....|++++|...|+++....| +...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3344455556666666666666665554432 33333344445556666666666666665555 444555555666666
Q ss_pred CCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010575 158 GDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHN 234 (507)
Q Consensus 158 ~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 234 (507)
|++++|...+++..+ | +...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 666666666666543 2 34456666666777777777777776665543222 2222222 23566677777777776
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCC
Q 010575 235 YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGRE----ALDMFSRMERARV 307 (507)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~~g~ 307 (507)
.+.+....++......+..++...|++++|...|+...+ .+...+..+...+...|++++ |...|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 666554223333344455666777777777777776654 244566677777788887775 788888887752
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHH-HHHH
Q 010575 308 KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAI-WGSL 385 (507)
Q Consensus 308 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l 385 (507)
+.+...+..+...+...|++++|+..++++... .+.+...+..+..++.+.|++++|...|+++ ...|+... +..+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 224567778888888888888888888888753 2334566677788888888888888888877 34565433 3345
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
..++...|+.++|...|+++++..|++.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 6677888888888888888888888753
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.2e-20 Score=180.19 Aligned_cols=295 Identities=11% Similarity=0.043 Sum_probs=180.9
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcC
Q 010575 49 KALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSD---VHVVAALIQMYASCK 125 (507)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 125 (507)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34556677888888888877743 22344666777777778888888888777776532221 245666777777777
Q ss_pred ChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hhHHHHHHHHHHhCCChhHHHH
Q 010575 126 CIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEKN--------VISWTTLIAGYAQMDQPNEAIT 196 (507)
Q Consensus 126 ~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~ 196 (507)
++++|..+|+++....| +..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 77777777777766544 55666677777777777777777776665321 1133445556666677777777
Q ss_pred HHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 010575 197 LFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K 274 (507)
Q Consensus 197 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~ 274 (507)
.|+++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......+++.++.+|.+.|++++|...++.+.+ |
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 777766543 2234455556666666666666666666666543222234455666666666666666666666543 3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhhCCCCChh
Q 010575 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH---VGLVELGRRYFNIMKSRYGIEPKIE 348 (507)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 348 (507)
+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.++ ++.|++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 4444455666666666666666666666554 4566566555554442 34566666666666654 4444443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=1.3e-19 Score=185.07 Aligned_cols=395 Identities=9% Similarity=-0.008 Sum_probs=302.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
-.-.+......|+.++|+.+|....... +.+...+..+...+...|++++|...++..++..+. +...+..+..++..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445566788999999999999988622 234445888889999999999999999999887533 56677788899999
Q ss_pred cCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHH
Q 010575 124 CKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFR 199 (507)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~ 199 (507)
.|++++|...++++....| +.. +..+...+...|+.++|+..++++.+ | +...+..+...+...+..+.|++.++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999998877 556 88889999999999999999999885 3 45566778888889999999999998
Q ss_pred HHhHCCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHHHHc-CCCCchh-HH----HHHHHHHHhcC
Q 010575 200 RMQVENVKPDE------IAMLAALSACA-----QLGAV---ELGEWIHNYIEQY-GLNTIVP-LN----NALIDMYAKSG 259 (507)
Q Consensus 200 ~m~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~ 259 (507)
.... .|+. .....++.... ..+++ +.|...++.+.+. ...|+.. .+ ...+..+...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 7654 2321 01122222222 22234 6788888888764 2223221 11 11133456779
Q ss_pred CHHHHHHHHHhcCCCC---h-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHH
Q 010575 260 KIGKALQVFENMKNKS---V-ITWTTMIAGLALHGLGREALDMFSRMERARVKP---NEITFIAILSACCHVGLVELGRR 332 (507)
Q Consensus 260 ~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~ 332 (507)
++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++.+..... .......+..++...|++++|.+
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 9999999999988642 2 122335778999999999999999987653211 13455667778899999999999
Q ss_pred HHHHhHHhhC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 010575 333 YFNIMKSRYG----------IEPK---IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 333 ~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 397 (507)
.++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..++..+...|++++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 9999986310 1122 234556778899999999999999998 3334 66788899999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 398 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
|++.++++++++|+++.++..++..+.+.|++++|..+++++.....
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999975443
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=3.3e-19 Score=178.37 Aligned_cols=346 Identities=12% Similarity=-0.002 Sum_probs=278.6
Q ss_pred HHccCChhHHHHHhccCCC------CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcH
Q 010575 20 CSSLGFSDYAYSIFTHKSK------PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIE 93 (507)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 93 (507)
+.+..+++.-.-.|..-++ .+..-...++..+.+.|++++|..+++...... +-+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence 3456677766666665443 234456667788899999999999999998853 223445666667778899999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 94 LGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE 172 (507)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 172 (507)
.|...++.+.+..+. +...+..+...+...|++++|...|+++....| +...+..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999998644 677888899999999999999999999998877 677888999999999999999999987753
Q ss_pred --C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHH
Q 010575 173 --K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNN 249 (507)
Q Consensus 173 --~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (507)
| +...+..+ ..+...|++++|...++.+++....++......+..++.+.|++++|...++.+.+.. +.+...+.
T Consensus 173 ~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 173 EVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred hCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3 33344333 4488899999999999998876544455555666778899999999999999999875 55677888
Q ss_pred HHHHHHHhcCCHHH----HHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 250 ALIDMYAKSGKIGK----ALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 250 ~l~~~~~~~~~~~~----A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
.+...|...|++++ |...|++..+ .+...+..+...+...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~ 329 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 89999999999986 7889988775 355788999999999999999999999999863 224567778888999
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
..|++++|+..++.+... .|+. ..+..+..++...|++++|...|+++
T Consensus 330 ~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 330 QVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999864 4543 33444677889999999999999987
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=8.9e-19 Score=175.93 Aligned_cols=392 Identities=10% Similarity=-0.025 Sum_probs=290.5
Q ss_pred HHHHHHHHHccCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHHHHHHHHcc
Q 010575 13 LSRFIDSCSSLGFSDYAYSIFTHKSK--PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPFVLKAVVKL 89 (507)
Q Consensus 13 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~ 89 (507)
+......|.+.|++++|++.|++... |+...|..+..++.+.|++++|+..++..++. .| +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 44667788899999999999998653 77788999999999999999999999999884 45 455788888999999
Q ss_pred CCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCh-------------------------
Q 010575 90 STIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNV------------------------- 144 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------------------------- 144 (507)
|++++|..-+......+...+... ..++..+........+...++.-....|..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999988876655432222211 111111111111122222222211111110
Q ss_pred -----hhHHHHHHH---HHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCH
Q 010575 145 -----AVWNTMVAG---YAKVGDLNNARALFELMTEK------NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE 210 (507)
Q Consensus 145 -----~~~~~li~~---~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 210 (507)
..+..+... ....+++++|.+.|+...+. ....|+.+...+...|++++|+..|++.++.. +.+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 001111111 12246889999999988742 34578888899999999999999999998853 2235
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010575 211 IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLA 287 (507)
Q Consensus 211 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 287 (507)
..|..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+...+ .+...+..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 678888889999999999999999998875 55678888999999999999999999998875 34567888899999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-h-------HHHHHHHHHhh
Q 010575 288 LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-E-------QYGCMIDLLGR 359 (507)
Q Consensus 288 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~-------~~~~l~~~~~~ 359 (507)
+.|++++|+..|++..+.. +.+...+..+...+...|++++|+..|++.... .|+. . .++.....+..
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999998752 335678888999999999999999999998853 3321 1 12222233445
Q ss_pred cCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 360 AGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.|++++|.+++++. ...|+ ...+..+...+...|++++|+..|+++.++.+...
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 79999999999986 55554 45788899999999999999999999999887643
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=4.7e-18 Score=173.99 Aligned_cols=418 Identities=11% Similarity=0.005 Sum_probs=299.9
Q ss_pred hHHHHHHHHH--------HHccCChhHHHHHhccCCCC--CcccHHHH-HHHHHcCCCchHHHHHHHHHHHcCCCCCccc
Q 010575 10 NHLLSRFIDS--------CSSLGFSDYAYSIFTHKSKP--DVYLYNTT-IKALCQTDNPLNAVILYNKIQASALRPDNYS 78 (507)
Q Consensus 10 ~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 78 (507)
..++..+... |.+.+...++++ .....| +....... .+.|.+.|++++|+.++.++.+.+ +.+...
T Consensus 142 ~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~ 218 (987)
T PRK09782 142 DAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAE 218 (987)
T ss_pred hhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHH
Confidence 4455555554 666655555555 222223 33333444 788888899999999999998865 223344
Q ss_pred HHHHHHHHHc-cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC---CCChhhHHHHH---
Q 010575 79 FPFVLKAVVK-LSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR---VWNVAVWNTMV--- 151 (507)
Q Consensus 79 ~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~li--- 151 (507)
...|..+|.. .++ +.+..+++. .+..+......++..|.+.|+.++|.++++++... .|...+|.-++
T Consensus 219 ~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~ 293 (987)
T PRK09782 219 RRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKY 293 (987)
T ss_pred HHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhc
Confidence 5566666666 366 777666443 23357778888889999999999999888887655 22222222111
Q ss_pred ---------------------------HHHHh------------------------------------------------
Q 010575 152 ---------------------------AGYAK------------------------------------------------ 156 (507)
Q Consensus 152 ---------------------------~~~~~------------------------------------------------ 156 (507)
..+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~ 373 (987)
T PRK09782 294 SANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEP 373 (987)
T ss_pred cCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCC
Confidence 11111
Q ss_pred ---------------cCCHHHHHHHHHhcCC-------------------------------------------------
Q 010575 157 ---------------VGDLNNARALFELMTE------------------------------------------------- 172 (507)
Q Consensus 157 ---------------~~~~~~A~~~~~~~~~------------------------------------------------- 172 (507)
.|+.++|.++|+....
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 5566666666655432
Q ss_pred -------------------C--ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010575 173 -------------------K--NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEW 231 (507)
Q Consensus 173 -------------------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 231 (507)
+ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|..
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 0 12233334444443 5666777766666654 3555544445555678999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHH---HHHHHHHcCChHHHHHHHHHHHHCCCC
Q 010575 232 IHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTT---MIAGLALHGLGREALDMFSRMERARVK 308 (507)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~g~~ 308 (507)
.++.+... +|+...+..+..++.+.|+.++|...|+...+.++..... +.......|++++|...+++..+. .
T Consensus 531 ~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~ 606 (987)
T PRK09782 531 AWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--A 606 (987)
T ss_pred HHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--C
Confidence 99987654 4444556677888999999999999999887654333333 333444569999999999999985 5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHH
Q 010575 309 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLL 386 (507)
Q Consensus 309 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 386 (507)
|+...+..+..++.+.|++++|+..+++.... .+.+...+..+..++...|++++|++.++++ ...| +...+..+.
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 67888999999999999999999999999863 3445778888999999999999999999988 4455 667899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
.++...|++++|+..+++++++.|++..+....++...+..+++.|.+.+++....++
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999999999998888765444
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=5.3e-17 Score=163.02 Aligned_cols=420 Identities=10% Similarity=0.000 Sum_probs=309.7
Q ss_pred HHHHccCChhHHHHHhccCCC--CCcc-cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHH-HH--HHHHHccCC
Q 010575 18 DSCSSLGFSDYAYSIFTHKSK--PDVY-LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFP-FV--LKAVVKLST 91 (507)
Q Consensus 18 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l--~~~~~~~~~ 91 (507)
-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++... |+...+. .+ ...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCC
Confidence 344688999999999998775 4321 233888888889999999999999873 4333333 33 456778899
Q ss_pred cHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 92 IELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMT 171 (507)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 171 (507)
+++|.++++++.+..+. +...+..++..+...++.++|++.++++....|+...+..++..+...++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999999999998755 56777788899999999999999999999998876666555555555667766999999988
Q ss_pred C--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHH------HHHHHHHH-----hccCCH---HHHHHHHH
Q 010575 172 E--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA------MLAALSAC-----AQLGAV---ELGEWIHN 234 (507)
Q Consensus 172 ~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~ll~~~-----~~~~~~---~~a~~~~~ 234 (507)
+ | +...+..+..++.+.|-...|.++.++-... +.+...- ....++.- ....++ +.|..-++
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 5 4 4567788888999999999998777653321 1121111 11111110 112233 33444444
Q ss_pred HHHHc-CC-CCchh----HHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 235 YIEQY-GL-NTIVP----LNNALIDMYAKSGKIGKALQVFENMKNK----SVITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 235 ~~~~~-~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
.+... +- ++... ...-.+-++...|+..++++.|+.+... ...+-..+..+|...+++++|+.+++++..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 44432 11 22212 2223455678889999999999999853 334667789999999999999999999876
Q ss_pred CC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC----------CCCCh---hHHHHHHHHHhhcCCHHHH
Q 010575 305 AR-----VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG----------IEPKI---EQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 305 ~g-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~g~~~~A 366 (507)
.. ..++......|..++...+++++|..+++.+.+... -.|++ ..+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 42 122333457888999999999999999999986311 01221 2344567778899999999
Q ss_pred HHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 367 EKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 367 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
++.++++ ...| |......+...+...|.+.+|++.++.+..+.|++..+....+.++...|+|++|.++.+.+....
T Consensus 436 e~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 436 QKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999998 3344 788889999999999999999999999999999999999999999999999999999998886443
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.5e-17 Score=158.48 Aligned_cols=429 Identities=11% Similarity=0.059 Sum_probs=280.7
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCCCC------cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccH-
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPD------VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSF- 79 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~- 79 (507)
+.+|.+.+.|.+.|-..|+.+.+..+.+.+...+ ..+|-.+.+++-..|+++.|...|.+..+. .||.+.+
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccc
Confidence 3466677777777777777777777766554321 234666777777777777777777666553 3444333
Q ss_pred -HHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----ChHHHHHHHHhcccCCC-ChhhHHHHHHH
Q 010575 80 -PFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCK----CIYDARKVFDELSLRVW-NVAVWNTMVAG 153 (507)
Q Consensus 80 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 153 (507)
.-|...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+.....| |...|..+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 335566677777777777777777664 225556666666666654 45666666666666655 66666666665
Q ss_pred HHhcCCHHHHHHHHHhcC--------CCChhHHHHHHHHHHhCCChhHHHHHHHHHhHC---CCCCCH------HHHHHH
Q 010575 154 YAKVGDLNNARALFELMT--------EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE---NVKPDE------IAMLAA 216 (507)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~l 216 (507)
+-...-+.. +..|.... ...+...|.+...+...|+++.|...|...... ...++. .+--.+
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 554433332 44443332 245566777777777888888888777776554 112222 122334
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChH
Q 010575 217 LSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR 293 (507)
Q Consensus 217 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 293 (507)
....-..++.+.|.+.|..+.+.. +.-+..|-.++......++..+|...+....+ .++..|+.+...+.....+.
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 445556667777777777777653 21122333333222233566777777776654 46677777777888888888
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 294 EALDMFSRMERA-RVKPNEITFIAILSACCH------------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 294 ~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
.|.+-|....+. ...+|..+...|.+.|.. .+..++|+++|.++.+ ..+-|...-+.+.-.+...
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhc
Confidence 887766665542 123566666666665542 2456778888888875 3355667777888888899
Q ss_pred CCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 361 GYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL--EPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 361 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
|++.+|..+|.+. .......+|..+...|...|++-.|+++|+..++. ..+++.+...|+.++.+.|++.+|.+..
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999887 22335567888999999999999999999998653 2346778889999999999999999988
Q ss_pred HHHHhC
Q 010575 437 KVMRDM 442 (507)
Q Consensus 437 ~~~~~~ 442 (507)
......
T Consensus 740 l~a~~~ 745 (1018)
T KOG2002|consen 740 LKARHL 745 (1018)
T ss_pred HHHHHh
Confidence 777543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=6.8e-16 Score=155.09 Aligned_cols=387 Identities=12% Similarity=0.022 Sum_probs=284.2
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCc--ccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 50 ALCQTDNPLNAVILYNKIQASALRPDN--YSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
...+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|...+++..... .........+...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 457899999999999999984 4664 234 78888889999999999999987221 22333444446789999999
Q ss_pred HHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhCCChhHHHHHHHHHhHC
Q 010575 128 YDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI--SWTTLIAGYAQMDQPNEAITLFRRMQVE 204 (507)
Q Consensus 128 ~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~ 204 (507)
++|.++|+++.+..| +...+..++..+...++.++|++.++++...++. .+..++..+...++..+|++.++++.+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999999999988 6677788889999999999999999999875443 4433333444466666699999999997
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhH------HHHHHHHH---H--hcCC---HHHHHHHHHh
Q 010575 205 NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL------NNALIDMY---A--KSGK---IGKALQVFEN 270 (507)
Q Consensus 205 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~---~--~~~~---~~~A~~~~~~ 270 (507)
. +.+...+..+..++.+.|-...|.++...-.+.- .+.... ...++..- . ...+ .+.|..-++.
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 4 3456677888889999998888887765432111 111000 00111000 0 1112 2334444444
Q ss_pred cCC-----CCh-h----HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 271 MKN-----KSV-I----TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 271 ~~~-----~~~-~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
+.. |.. . ..--.+-++...|++.+++..++.+...|.+.-..+-..+..+|...+.+++|+.+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 432 211 1 122345678889999999999999998886545567788999999999999999999999764
Q ss_pred hC----CCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCC--------------CCCH--H-HHHHHHHHHHHcCCHHHHH
Q 010575 341 YG----IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPF--------------EANA--A-IWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 341 ~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~--~-~~~~l~~~~~~~g~~~~A~ 399 (507)
.+ .+++......|..+|...+++++|..+++++.. .||+ . ....++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 22 123444457889999999999999999998821 1222 2 2344566788999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 400 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+.++++....|.|+.....+++++...|...+|.++++.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999887643
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=8.7e-16 Score=148.10 Aligned_cols=404 Identities=10% Similarity=0.012 Sum_probs=250.5
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCC--CCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHH
Q 010575 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALR--PDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAA 116 (507)
Q Consensus 39 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (507)
.|+...+.|...|...|++..++.+...+...... .-..+|-.+.+++-..|++++|...|.+..+.....-...+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 34555666666666666777776666666553210 1123355566666667777777777666655433222333445
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcC----CHHHHHHHHHhcCCC---ChhHHHHHHHHHHhC
Q 010575 117 LIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVG----DLNNARALFELMTEK---NVISWTTLIAGYAQM 188 (507)
Q Consensus 117 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 188 (507)
|.+.|.+.|+++.+...|+.+....| +..+...+...|...+ ..+.|..++.+..++ |...|-.+...+-..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 56667777777777777777666655 4455555555555553 445555565555543 344555555554444
Q ss_pred CChhHHHHHHHHH----hHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCC------chhHHHHHHHHH
Q 010575 189 DQPNEAITLFRRM----QVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY---GLNT------IVPLNNALIDMY 255 (507)
Q Consensus 189 ~~~~~a~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~~~~ 255 (507)
.-+.. +..|... ...+-.+.....+.+...+...|+++.|...|...... ...+ ++.+--.+..++
T Consensus 428 d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred ChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 33332 5544433 23343455666777777777777777777777766554 1122 222233355556
Q ss_pred HhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 010575 256 AKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRR 332 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 332 (507)
-..++.+.|.+.|..+.+..+ ..|..++......+...+|...+++..... ..++..+..+...+.....+..|..
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccccc
Confidence 666777777777777766322 234444433334567778888887776542 3344455555556777777777777
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHhh------------cCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 010575 333 YFNIMKSRYGIEPKIEQYGCMIDLLGR------------AGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A 398 (507)
-|..+.++....+|+.+.-+|.+.|.+ .+..++|+++|.++ ...| |...-+.+...++..|++.+|
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A 665 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEA 665 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHH
Confidence 666666553444666666666665542 35577888888876 4444 666677777788888999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
..+|.++.+-..+.+.+|.+++.+|..+|+|-.|++.|+...+.-.
T Consensus 666 ~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 666 RDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988776666678899999999999999999999988864443
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.3e-15 Score=134.86 Aligned_cols=410 Identities=10% Similarity=0.056 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHccCChhHHHHHhccCCC----CCcccH-HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCc--c----cH
Q 010575 11 HLLSRFIDSCSSLGFSDYAYSIFTHKSK----PDVYLY-NTTIKALCQTDNPLNAVILYNKIQASALRPDN--Y----SF 79 (507)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~----~~ 79 (507)
.+...|.+-|.-.....+|+..++-+.+ ||.-.. -.+-..+.+.+++..|++.|...+.. .|+. . ..
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHH
Confidence 3445566666677777888887776654 333221 22334566777788888888777663 3332 2 23
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC--------------CCChh
Q 010575 80 PFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR--------------VWNVA 145 (507)
Q Consensus 80 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~p~~~ 145 (507)
+.+.-.+.+.|.++.|...|+...+. .|+..+-..|+-++..-|+-++..+.|.+|... .|+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 33334456788888888888887765 355555445555666678888888888777543 12222
Q ss_pred hHHH-----HHHHHHhcC--CHHHHHHHHHhcCC----CChh---HH----------H--------HHHHHHHhCCChhH
Q 010575 146 VWNT-----MVAGYAKVG--DLNNARALFELMTE----KNVI---SW----------T--------TLIAGYAQMDQPNE 193 (507)
Q Consensus 146 ~~~~-----li~~~~~~~--~~~~A~~~~~~~~~----~~~~---~~----------~--------~li~~~~~~~~~~~ 193 (507)
..+. .+.-.-+.+ +.++++-.--++.. |+-. -| . .-...+.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 2221 122222211 12222222222222 2210 01 0 11235678888888
Q ss_pred HHHHHHHHhHCCCCCCHH---------------------HHHHH---------------HHHHhccCCHHHHHHHHHHHH
Q 010575 194 AITLFRRMQVENVKPDEI---------------------AMLAA---------------LSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 194 a~~~~~~m~~~~~~~~~~---------------------~~~~l---------------l~~~~~~~~~~~a~~~~~~~~ 237 (507)
|+++++.+.+..-+.-.. .|.-+ .+.....|++++|...+.+..
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 888887765543211111 11100 001123478888888888888
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010575 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK---NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 314 (507)
...-......|| +.-.+-..|++++|+..|-.+. ..+..+.-.+...|-...+..+|++++-+.... ++.|+...
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 665444444444 3445677889999999887665 367777778888898899999999998877664 55678888
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHH-HHc
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAAS-NIY 392 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~-~~~ 392 (507)
..|...|-+.|+-.+|.+++-.--. -++-+..+...|..-|....-+++|+.+|+++ -++|+..-|..++..| .+.
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 9999999999999999988765543 45667888888999999999999999999998 5789999999999877 678
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 393 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 393 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
|++++|..+++...+..|.+...+..|++++...|.
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999999999988885
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.4e-14 Score=139.05 Aligned_cols=358 Identities=15% Similarity=0.137 Sum_probs=243.3
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHH
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~ 162 (507)
+.+.-.|+++.|.+++.++++..+. +...|..|..+|-..|+.+++...+-.+....| |...|..+.....+.|+++.
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3344459999999999999988644 677888899999999999999888877766666 77888888888889999999
Q ss_pred HHHHHHhcCCCChh---HHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHH----HHHHHHhccCCHHHHHHHHHH
Q 010575 163 ARALFELMTEKNVI---SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML----AALSACAQLGAVELGEWIHNY 235 (507)
Q Consensus 163 A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~ 235 (507)
|.-.|.+..+.++. .+---+..|-+.|+...|...|.++.....+.|..-+. .++..+...++-+.|.+.++.
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999888864433 33445677888899999999999888764322222222 233445555555666666665
Q ss_pred HHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010575 236 IEQY-GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPN 310 (507)
Q Consensus 236 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 310 (507)
.... +-..+...++.++..|.+...++.|......+.. +|..-|..- -. ++ ..-..++. ...++.++
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~-~~-~~~~~~~~--~~~~~s~~ 377 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ER-RR-EEPNALCE--VGKELSYD 377 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hh-cc-cccccccc--CCCCCCcc
Confidence 5542 2234455566677777777777776666554433 222211000 00 00 00000000 01123333
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHhhC---CCCCCHHHHHHH
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP--KIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWGSL 385 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l 385 (507)
... ..+.-++......+....+....... ...| +...|.-+..+|.+.|++.+|+.+|..+ +...+...|..+
T Consensus 378 l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 378 LRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred chh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 333 12223334444444444444444443 4333 5678899999999999999999999998 333467789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSY 452 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 452 (507)
..+|...|.+++|++.|++++...|++..+...|+.++.+.|+.++|.+.++.+...+-+...++.|
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9999999999999999999999999999999999999999999999999999987554444455544
No 29
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.4e-14 Score=129.52 Aligned_cols=388 Identities=14% Similarity=0.070 Sum_probs=256.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC-cccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPD-NYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYA 122 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (507)
+.....-|.++|++++|++.|.+.++ ..|| +..|.....+|...|+++++.+--...++.++. -+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 44555677889999999999999998 6688 777888888889999999988877777665422 2335555566777
Q ss_pred hcCChHHHHHHHHhcccC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHH-------------------
Q 010575 123 SCKCIYDARKVFDELSLR-VWNVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWT------------------- 179 (507)
Q Consensus 123 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~------------------- 179 (507)
..|++++|+.=..-..-. +.+-.....++.-..+.--...+.+-+..-.. |++....
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 788887765322111000 11111111122111111111222222221111 2211111
Q ss_pred ----HHHHHHH--hCC---ChhHHHHHHHHHhHCC-CCC-----CH------HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010575 180 ----TLIAGYA--QMD---QPNEAITLFRRMQVEN-VKP-----DE------IAMLAALSACAQLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 180 ----~li~~~~--~~~---~~~~a~~~~~~m~~~~-~~~-----~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 238 (507)
.+..++- ..+ .+..|...+.+-.... ..+ |. .+.......+.-.|+.-.+..-|+..++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1111111 011 2233333222211100 011 11 1111111123345778888888888888
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHH
Q 010575 239 YGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITF 314 (507)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~ 314 (507)
....++ ..|--+..+|....+.++..+.|+...+ .|+.+|..-.+.+.-.+++++|..-|++.+.. .| +...|
T Consensus 355 l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAY 431 (606)
T ss_pred cCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHH
Confidence 764333 3366677789999999999999998775 46678888888888899999999999999885 44 45677
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC---------HHHHHH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---------AAIWGS 384 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---------~~~~~~ 384 (507)
..+.-+..+.+.+++++..|++.++ .++..+.+|+.....+..++++++|.+.|+.. ...|. +.+...
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 7777777889999999999999998 55667889999999999999999999999987 33333 222333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++..- -.+++..|+.+++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus 510 ~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 510 LLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred Hhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333 34899999999999999999999999999999999999999999998864
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=9.1e-15 Score=128.62 Aligned_cols=350 Identities=12% Similarity=0.126 Sum_probs=231.3
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHhccCCC----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHH
Q 010575 6 LDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK----PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPF 81 (507)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (507)
.+-++.++..+|..+|+-...+.|.+++++-.. -+..+||.+|.+-+-. .-.+++.+|.+..+.||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 355778999999999999999999999987543 5677888888764432 23788899999889999999999
Q ss_pred HHHHHHccCCcH----HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHH-HHHHHHhccc----C-----CC-Chhh
Q 010575 82 VLKAVVKLSTIE----LGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYD-ARKVFDELSL----R-----VW-NVAV 146 (507)
Q Consensus 82 l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~----~-----~p-~~~~ 146 (507)
++.+.++.|+++ .|.+++.+|.+.|++|...+|..+|..+.+.++..+ |..++.++.. + .| +...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 999999999776 456888899999999999999999999988887754 4444444432 2 23 5566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--------CC---hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHH
Q 010575 147 WNTMVAGYAKVGDLNNARALFELMTE--------KN---VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA 215 (507)
Q Consensus 147 ~~~li~~~~~~~~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 215 (507)
+...+..|....+.+-|.++-.-+.. ++ ..-|..+....++....+.-...|+.|+-+-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 77888888888898888887766653 11 23456677778888889999999999988878889999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChHH
Q 010575 216 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALH-GLGRE 294 (507)
Q Consensus 216 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 294 (507)
++++....+.++-.-.++..++..|...+......++..+++..- .|+...-..+-...++. -++.+
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888765554444444444444331 01101000000000000 00111
Q ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHH---HHHHHHhhcCCHHHHHHHH
Q 010575 295 -ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG---CMIDLLGRAGYLQEAEKLL 370 (507)
Q Consensus 295 -A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~ 370 (507)
....-.+|.+..+ .....+.++..+.+.|..++|.+++..+.+...-.|.....+ -+++.-.+......|...+
T Consensus 507 ~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 507 AYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 1111222333322 233344444455566666666666666644323333333333 3444445556666666666
Q ss_pred hhC
Q 010575 371 RRM 373 (507)
Q Consensus 371 ~~~ 373 (507)
+-|
T Consensus 585 Q~a 587 (625)
T KOG4422|consen 585 QLA 587 (625)
T ss_pred HHH
Confidence 655
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=7.8e-15 Score=129.97 Aligned_cols=392 Identities=13% Similarity=0.077 Sum_probs=273.7
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHH-HHHHHHccCCcHHHHHHHHHHHHcCCCCcH----HHHHHHHHH
Q 010575 46 TTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPF-VLKAVVKLSTIELGREIHCQTVGTGLDSDV----HVVAALIQM 120 (507)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 120 (507)
.|..-|..+....+|+..|+-+.+...-|+.-.... +.+.+.+.+++.+|.++++..+..-+..+. .+.+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344566677778899999999888777777655433 345678888999999999988876544333 344555557
Q ss_pred HHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC----------------CChhHHHHHH--
Q 010575 121 YASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE----------------KNVISWTTLI-- 182 (507)
Q Consensus 121 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~li-- 182 (507)
+.+.|+++.|+..|+...+..|+..+-..|+-++...|+-++..+.|.+|.. |+....+.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 8899999999999999999999888766677777778999999999999873 1222222111
Q ss_pred ---HHHHhCC--ChhHHHHHHHHHhHCCCCCCHH-------------HHH--------HHHHHHhccCCHHHHHHHHHHH
Q 010575 183 ---AGYAQMD--QPNEAITLFRRMQVENVKPDEI-------------AML--------AALSACAQLGAVELGEWIHNYI 236 (507)
Q Consensus 183 ---~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~-------------~~~--------~ll~~~~~~~~~~~a~~~~~~~ 236 (507)
.-.-+.+ +.++++-.--++...-+.|+.. .+. .-..-+.+.|+++.|.+++.-+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 1111111 1222222222222222223211 000 1122467899999999999887
Q ss_pred HHcCCCCchhHHHHHHHHH------------------------------------HhcCCHHHHHHHHHhcCCCChhHHH
Q 010575 237 EQYGLNTIVPLNNALIDMY------------------------------------AKSGKIGKALQVFENMKNKSVITWT 280 (507)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~A~~~~~~~~~~~~~~~~ 280 (507)
.+.....-...-+.|-..+ ...|++++|.+.|++....|...-.
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 7654322221111111111 1247888888888888887765444
Q ss_pred HH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 281 TM---IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 281 ~l---~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
+| ...+-..|+.++|++.|-++..- +..+......+...|....+..+|++++.+... -++.|+.....|.+.|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 43 34567789999999999887654 344667777888889999999999999988875 5666789999999999
Q ss_pred hhcCCHHHHHHHHhh-CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHH
Q 010575 358 GRAGYLQEAEKLLRR-MPF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 435 (507)
-+.|+-.+|.+..-. ... ..+..+..=|..-|....-.++|+.+|+++--+.|+-...-..++.++.+.|++..|.++
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999986543 332 236666666677777888889999999999999999666666677788899999999999
Q ss_pred HHHHH
Q 010575 436 RKVMR 440 (507)
Q Consensus 436 ~~~~~ 440 (507)
++.+-
T Consensus 683 yk~~h 687 (840)
T KOG2003|consen 683 YKDIH 687 (840)
T ss_pred HHHHH
Confidence 99885
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=1.9e-17 Score=149.64 Aligned_cols=256 Identities=16% Similarity=0.148 Sum_probs=112.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA-MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 258 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (507)
.+...+.+.|++++|+++++.......+|+... +..+...+...++++.|...++.+...+. .+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 346667788888888888865544432344333 34445566677888888888888887653 355566667776 688
Q ss_pred CCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 010575 259 GKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFN 335 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (507)
+++++|.+++....+ ++...+...+..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999888876644 456677778888999999999999999977543 34567778888889999999999999999
Q ss_pred HhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 336 IMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 336 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
++.+. .| +......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...++++.+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99974 45 5778889999999999999988888776 123456678899999999999999999999999999999
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 413 SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 413 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+.+...+++++...|+.++|.++.++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999988764
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=1.9e-12 Score=120.12 Aligned_cols=432 Identities=13% Similarity=0.064 Sum_probs=295.9
Q ss_pred HHHHHHccCChhHHHHHhccCC---CCCcccHHHHHHHHHcCCCchHHHHHHHHH----HHcCCCCCcccHHHHHHHHHc
Q 010575 16 FIDSCSSLGFSDYAYSIFTHKS---KPDVYLYNTTIKALCQTDNPLNAVILYNKI----QASALRPDNYSFPFVLKAVVK 88 (507)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~l~~~~~~ 88 (507)
|.-+|++...++.|.+++.+.. +.+...|.+-...--++|+.+...+++++- ...|+..+...|..=...|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3445677777888888876644 467788888887778889988888887764 345777888888877888888
Q ss_pred cCCcHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHH
Q 010575 89 LSTIELGREIHCQTVGTGLDSD--VHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARA 165 (507)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~ 165 (507)
.|..-.+..+....+..|++.. ..||+.-.+.|.+.+.++-|..+|....+..| +...|......--..|..+....
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 8888888888888887776532 35677777778888888888888887777766 56667777666666777777777
Q ss_pred HHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 010575 166 LFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN 242 (507)
Q Consensus 166 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (507)
+|++... .....|-.....+-..|+...|..++.+..+.+ +.+...+...+..-.....++.|..+|.+.... .
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 7777654 233455555566666777777777777766654 235556666666666777777777777666543 4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSV-ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS 319 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 319 (507)
++..+|..-+....-.++.++|.+++++..+ |+. -.|..+.+.+-+.++.+.|.+.|..-.+. ++-....|..|..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHH
Confidence 5555555555555566677777777766655 222 35555666666666666666666554443 2223344445555
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----C---------------------
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----P--------------------- 374 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~--------------------- 374 (507)
.-.+.|.+-.|..++++..- ..+-+...|...|.+=.+.|+.+.|..+..++ |
T Consensus 728 leEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchH
Confidence 55555666666666666654 33445566666666666666666665554433 1
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 010575 375 -------FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 447 (507)
Q Consensus 375 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 447 (507)
...|+.....+...+.....+++|...|+++++.+|++..+|..+-..+.+.|.-++-.+++.+.... ++.
T Consensus 806 s~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~ 883 (913)
T KOG0495|consen 806 SIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPT 883 (913)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCC
Confidence 34566666777778888889999999999999999999999999999999999988888999888643 455
Q ss_pred CceeEEEE
Q 010575 448 PGCSYIEV 455 (507)
Q Consensus 448 ~~~~~~~~ 455 (507)
.|..|..+
T Consensus 884 hG~~W~av 891 (913)
T KOG0495|consen 884 HGELWQAV 891 (913)
T ss_pred CCcHHHHH
Confidence 56556433
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.6e-13 Score=120.85 Aligned_cols=352 Identities=11% Similarity=0.113 Sum_probs=227.3
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 010575 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALI 118 (507)
Q Consensus 39 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 118 (507)
.+..++..+|.++|+--..+.|..+|++......+.+..+||.+|.+-.-..+ .+++.+|......||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence 45578999999999999999999999998887778899999999887643322 78889999999999999999999
Q ss_pred HHHHhcCChHHHH----HHHHhcccC--CCChhhHHHHHHHHHhcCCHHH-HHHHHHhcCC------------CChhHHH
Q 010575 119 QMYASCKCIYDAR----KVFDELSLR--VWNVAVWNTMVAGYAKVGDLNN-ARALFELMTE------------KNVISWT 179 (507)
Q Consensus 119 ~~~~~~g~~~~A~----~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~------------~~~~~~~ 179 (507)
.+..+.|+++.|. +++.+|++. .|+..+|..+|..+++.++..+ |..++..+.. .|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999999887655 455556555 6678888888888888777644 3333333321 2344555
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCC----CCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVEN----VKPD---EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
.-+..|.+..+.+-|.++-.-..... +.|+ ..-|..+....++....+.-...|+.|+-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 66666667777766666554443221 2222 1234555666667777777777777777666666666666677
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHH
Q 010575 253 DMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEI---TFIAILSACCHVGLVEL 329 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~ 329 (507)
++..-.|.++-..+++..+..-+ ..-+.+--++++..|......|+.. -+.....-|+. ++.+
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~g------------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e 506 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYG------------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKE 506 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhh------------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHH
Confidence 76666666666666665544321 1112222334444454444444332 22222221211 1211
Q ss_pred -HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010575 330 -GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEANAAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 330 -a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
....-.++.+ ..-.....+...-.+.+.|+.++|.+++... +..|......-++.+-...++.-.|..+
T Consensus 507 ~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 507 AYESQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHhhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 1222223332 2334556677778889999999999998765 3445444455666677788899999999
Q ss_pred HHHHhccCCC
Q 010575 402 LQHLIKLEPH 411 (507)
Q Consensus 402 ~~~~~~~~p~ 411 (507)
++-+...+-+
T Consensus 584 lQ~a~~~n~~ 593 (625)
T KOG4422|consen 584 LQLASAFNLP 593 (625)
T ss_pred HHHHHHcCch
Confidence 9998766544
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=1.8e-12 Score=120.30 Aligned_cols=413 Identities=12% Similarity=0.090 Sum_probs=332.3
Q ss_pred HccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHH
Q 010575 21 SSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGRE 97 (507)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 97 (507)
......++|+-++....+ .+...|. ++++-.-++.|..+++..++ .++.++..|.+....=-.+|+.+.+.+
T Consensus 387 VelE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 345667778888877554 3445554 44555778999999999987 467788888887777788999998888
Q ss_pred HHHHHH----HcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 98 IHCQTV----GTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW----NVAVWNTMVAGYAKVGDLNNARALFEL 169 (507)
Q Consensus 98 ~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~~A~~~~~~ 169 (507)
++++-+ ..|+..+..-|..=...+-..|..-.+..+.......+. -..+|..-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 877644 468888888888888888889998888888887766533 356899999999999999999999998
Q ss_pred cCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh
Q 010575 170 MTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVP 246 (507)
Q Consensus 170 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 246 (507)
..+ .+...|...+..--..|..+....+|++.... ++-....+......+-..|+...|..++..+.+.. +.+..
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnsee 619 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEE 619 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHH
Confidence 876 24466777777777789999999999999886 34455666667777888899999999999998876 44777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE-ITFIAILSACCH 323 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 323 (507)
++-.-+.....+..++.|+.+|.+... +....|..-+...--.++.++|+.++++..+. -|+- ..|..+.+.+-+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 888888889999999999999998875 56678877777777889999999999998886 4554 677888889999
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
.++.+.|...|..=.+ ..+-.+..|-.|...=.+.|++-+|..++++. +...+...|...|..-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887665 45666788888888888999999999999998 3334778999999999999999999999
Q ss_pred HHHHhccCCCCC------------------------------chHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 402 LQHLIKLEPHNS------------------------------GNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 402 ~~~~~~~~p~~~------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
..++++-.|++. ..+...+..+....+++.|.+.|.+..+.+.
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 999887666653 3556667777777788888888888765443
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.8e-12 Score=124.81 Aligned_cols=428 Identities=15% Similarity=0.104 Sum_probs=300.9
Q ss_pred hHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 010575 10 NHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAV 86 (507)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 86 (507)
....-...+.+.-.|+.++|.+++.++.+ .+...|.+|...|-..|+.+++...+-..-.- .+-|...|..+....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHH
Confidence 33333344444455999999999999765 46688999999999999999999877655442 234667788888888
Q ss_pred HccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC--Chh----hHHHHHHHHHhcCCH
Q 010575 87 VKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW--NVA----VWNTMVAGYAKVGDL 160 (507)
Q Consensus 87 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~----~~~~li~~~~~~~~~ 160 (507)
.+.|++.+|.-+|.+.++..++ +...+-.-+..|-+.|+...|...|.++....| |.. .--..+..+...++-
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999998644 555555667889999999999999999988866 222 233446677778888
Q ss_pred HHHHHHHHhcCC-----CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHH----------------------H
Q 010575 161 NNARALFELMTE-----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA----------------------M 213 (507)
Q Consensus 161 ~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----------------------~ 213 (507)
+.|.+.++.... -+...++.++..|.+..+++.|......+......+|..- |
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 999999888764 2445788999999999999999999888876222222111 1
Q ss_pred ----HHHHHHHhccCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHH
Q 010575 214 ----LAALSACAQLGAVELGEWIHNYIEQYG--LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMI 283 (507)
Q Consensus 214 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~ 283 (507)
--+.-++......+....+...+.... +.-+...|.-+..+|...|++.+|.++|..+.. .+...|-.+.
T Consensus 377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 122334455566666666666677666 344577888899999999999999999999886 3567899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHH-------hhCCCCChhHHHHHHH
Q 010575 284 AGLALHGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKS-------RYGIEPKIEQYGCMID 355 (507)
Q Consensus 284 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~ 355 (507)
.+|...|..++|++.|+..+.. .|+ ...-..|...+.+.|+.++|.+.+..+.. ..+..|+........+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 9999999999999999999885 443 45566777788899999999999988531 1245555556666777
Q ss_pred HHhhcCCHHHHHHHHhhC-----------C--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Q 010575 356 LLGRAGYLQEAEKLLRRM-----------P--------------FEANAAIWGSLLAASNIYGDVELGECALQHL----- 405 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-----------~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 405 (507)
.+...|+.++-......| + ..-........+.+-.+.++..........-
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~ 614 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA 614 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence 788888887754443333 0 0112222233333333333322222211111
Q ss_pred hccCCCCC----chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 406 IKLEPHNS----GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 406 ~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
....--+. ..+.-++..+.+.|++++|+.+...+..
T Consensus 615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~ 654 (895)
T KOG2076|consen 615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALE 654 (895)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 01111111 2345667788899999999999877753
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.8e-13 Score=118.66 Aligned_cols=327 Identities=13% Similarity=0.055 Sum_probs=241.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH-HHHHHH
Q 010575 106 GLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEKNVIS-WTTLIA 183 (507)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~li~ 183 (507)
+...|...+-.....+.+.|....|+..|.......| .-..|..|... ..+.+.+..+.......+... =-.+..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHH
Confidence 3444555554455566677888889988888877744 44444444333 334444443333333221111 112445
Q ss_pred HHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCH
Q 010575 184 GYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL--NTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 184 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 261 (507)
++....+.+++..-.......|++.+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++ |.+..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 6666678888888888888888766666666666667788899999999999998742 13456666555 3433322
Q ss_pred HH---HHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 262 GK---ALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 262 ~~---A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
.- |..++ .+.+--+.|..++..-|+-.++.++|...|++..+.+. -....|+.+..-|....+...|++.++.+.
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 21 22222 23333456777788889999999999999999998632 244678888889999999999999999999
Q ss_pred HhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 339 SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
+ -.+.|-..|..|.++|.-.+...=|+-+|+++ ..+| |+..|.+|...|.+.++.++|+.+|.+++..+-.+..++
T Consensus 392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 6 34557899999999999999999999999998 5666 777999999999999999999999999998887778899
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 417 AILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 417 ~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..|+.+|.+.++.++|..++++..+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.8e-12 Score=112.64 Aligned_cols=414 Identities=14% Similarity=0.094 Sum_probs=306.4
Q ss_pred HccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCccc-HHHHHHHHHccCCcHHHH
Q 010575 21 SSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYS-FPFVLKAVVKLSTIELGR 96 (507)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~ 96 (507)
-+++++..|+++|+.... .+...|-..+..-.++.++..|..++++... +-|.+.- |-.-+..=-..|+...|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHH
Confidence 456788889999988654 6777888888888999999999999999887 4454432 333333345689999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---
Q 010575 97 EIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEK--- 173 (507)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--- 173 (507)
++|+.-.. .+|+...|++.|+.-.+...++.|..+|++..--.|++.+|......-.++|+...|..+|+...+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 99998876 4789999999999999999999999999999888899999999999999999999999999887751
Q ss_pred ---ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC--HHHHHHHHHHHhccCCHHHHHHH--------HHHHHHcC
Q 010575 174 ---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD--EIAMLAALSACAQLGAVELGEWI--------HNYIEQYG 240 (507)
Q Consensus 174 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~ 240 (507)
+...+.+...--.++..++.|.-+|+-.++. ++.+ ...|......--+-|+....... ++..++.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 2234555555555677888999999888875 2222 23344444433444554433322 33333333
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--Ch---hHHHHHHH--------HHHHcCChHHHHHHHHHHHHCCC
Q 010575 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--SV---ITWTTMIA--------GLALHGLGREALDMFSRMERARV 307 (507)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~---~~~~~l~~--------~~~~~~~~~~A~~~~~~m~~~g~ 307 (507)
+.|-.+|-..+..-...|+.+...++|+..... .. ..|...|- .-....+.+.+.++++..++. +
T Consensus 319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 667777777888888889999999999887642 11 12222221 112467888899999988874 4
Q ss_pred CCCHHHHHHHH----HHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHH
Q 010575 308 KPNEITFIAIL----SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAI 381 (507)
Q Consensus 308 ~p~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 381 (507)
+....||..+= .-..++.++..|.+++..+. |.-|...++...|..=.+.++++....++++. ...| +-.+
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 44445655333 23346788999999998888 88899999999999889999999999999987 5556 6678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 382 WGSLLAASNIYGDVELGECALQHLIKLEPHN--SGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
|......-...|+.++|..+|+-+++...-+ ...|...++.-...|.++.|..+++.+.+...
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 8888888888999999999999987644222 23566777777888999999999999976544
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=1.4e-14 Score=134.77 Aligned_cols=271 Identities=13% Similarity=0.049 Sum_probs=146.5
Q ss_pred CHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC--CCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010575 159 DLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVEN--VKPDEIAMLAALSACAQLGAVELGEWIH 233 (507)
Q Consensus 159 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 233 (507)
+..+|+..|.++++ + .......+..+|...+++++|.++|+...+.. ..-+...|.+.+-.+-+. -+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 44566666666443 1 22334445566666666666666666665532 112334555555433221 111111
Q ss_pred -HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010575 234 -NYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKP 309 (507)
Q Consensus 234 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 309 (507)
+.+.+.. +..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|+|+..|+..+.. .|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 1222222 344556666666666666666666666665543 2345555655566666666666666655542 22
Q ss_pred C-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHH
Q 010575 310 N-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSL 385 (507)
Q Consensus 310 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 385 (507)
. -..|..+...|.++++++.|+-.|+++.+ +.| +......++..+.+.|+.++|+.+++++ ...| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 2 23445555566666666666666666653 233 3344445555566666666666666665 2222 33333334
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
+..+...+++++|...++++.++-|++..++..++.+|.+.|+.+.|+.-|.-+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 444555666666666666666666666666666666666666666666655444
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.2e-12 Score=115.30 Aligned_cols=404 Identities=13% Similarity=0.086 Sum_probs=303.6
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYA 122 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (507)
.|-....--...+++..|..+|++.+... .-+...|..-+..=.++..+..|..+++..+..=+..| ..|--.+.+--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHH
Confidence 34333444455677889999999998743 23444566666666788899999999999988644433 34445555566
Q ss_pred hcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChhHHHHHHHH
Q 010575 123 SCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMT--EKNVISWTTLIAGYAQMDQPNEAITLFRR 200 (507)
Q Consensus 123 ~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 200 (507)
..|++..|.++|++-.+-.|+...|.+.|+.-.+-+.++.|..++++.. .|++.+|--....-.+.|+...|..+|..
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999876 58999999888888999999999999998
Q ss_pred HhHC-C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------H
Q 010575 201 MQVE-N-VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI--VPLNNALIDMYAKSGKIGKALQV--------F 268 (507)
Q Consensus 201 m~~~-~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~--------~ 268 (507)
..+. | -..+...|.+...--.+...++.|.-++...++.- +.+ ...|..+...--+-|+....... |
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 8764 1 11122334444444455677888888998888763 222 34455555444455664444333 2
Q ss_pred HhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHH-----HH---HhccCcHHHHHHHHH
Q 010575 269 ENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITFIAIL-----SA---CCHVGLVELGRRYFN 335 (507)
Q Consensus 269 ~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~-----~~---~~~~g~~~~a~~~~~ 335 (507)
+.+.+. |-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|...| -+ -....|++.+.++|+
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333333 4467888888888889999999999999876 55532 1121111 11 235689999999999
Q ss_pred HhHHhhCCCCChhHHHHHHHH----HhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 336 IMKSRYGIEPKIEQYGCMIDL----LGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
...+ -++....++..+--+ -.++.++..|.+++..+ +.-|...++...|..-.+.+++++...++++.++..|
T Consensus 391 ~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 391 ACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred HHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 9986 444455665544433 45789999999999887 7789999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeE
Q 010575 411 HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSY 452 (507)
Q Consensus 411 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 452 (507)
.+..+|...+..-...|+++.|..+|+-..++.....|...|
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 999999999999999999999999999998877766666655
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-12 Score=116.85 Aligned_cols=285 Identities=11% Similarity=0.033 Sum_probs=177.3
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC----ChhhHHHHHHHHHhcCC
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW----NVAVWNTMVAGYAKVGD 159 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~ 159 (507)
.++-.....+++.+-.+.....|++.+...-+....+.-...++++|+.+|+++....| |..+|..++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34445556667777777777777766666666666666677888888888888887766 56666666544333222
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 010575 160 LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 239 (507)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 239 (507)
+.---...-.+.+--+.|+..+.+-|.-.++.++|...|+..++.+ +.....++.+..-|....+...|..-++..++.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 2222222222333344566666677777777777777777777754 223445666666677777777777777777766
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010575 240 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA 316 (507)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 316 (507)
. +.|-..|-.|.++|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|+..|.+....| ..+...+..
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 5 56667777777777777777777777766543 466677777777777777777777777776654 225566777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhh---CCCCC--hhHHHHHHHHHhhcCCHHHHHHHHh
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRY---GIEPK--IEQYGCMIDLLGRAGYLQEAEKLLR 371 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 371 (507)
|...|-+.++..+|.+.|++..+.. |...+ .....-|..-+.+.+++++|..+..
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 7777777777777777776665421 11111 1112224444556666666655433
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=2.1e-13 Score=128.92 Aligned_cols=245 Identities=11% Similarity=0.087 Sum_probs=138.4
Q ss_pred HhCCChhHHHHHHHHHhHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 010575 186 AQMDQPNEAITLFRRMQVENVKPDEIAML--AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK 263 (507)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 263 (507)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+.. +.+..+...+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 5555566666666555542 23322111 22344555566666666665555554 3344555555566666666666
Q ss_pred HHHHHHhcCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 010575 264 ALQVFENMKNKSV-----------ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRR 332 (507)
Q Consensus 264 A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 332 (507)
|.+++..+.+... .+|..++.......+.+....+++.+.+. .+.++.....+...+...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6655555554211 12222233333333444555555554332 23455666667777777777777777
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 333 YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
++++..+. +|+.... ++.+....++.+++.+..++. +..| |+..+..+...|.+.|++++|.+.|+++++..|
T Consensus 285 ~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 77766642 3444222 223333457777777777666 3344 344566677777777777777777777777777
Q ss_pred CCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 411 HNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 411 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++ ..+..++.++.+.|+.++|.+++++-.
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 73 445677777777777777777776653
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=6.9e-13 Score=125.46 Aligned_cols=279 Identities=13% Similarity=-0.029 Sum_probs=197.7
Q ss_pred cCChHHHHHHHHhcccCCCChhhHHHH-HHHHHhcCCHHHHHHHHHhcCC--CChhHHH--HHHHHHHhCCChhHHHHHH
Q 010575 124 CKCIYDARKVFDELSLRVWNVAVWNTM-VAGYAKVGDLNNARALFELMTE--KNVISWT--TLIAGYAQMDQPNEAITLF 198 (507)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~a~~~~ 198 (507)
.|++++|.+.+.......++...+..+ .....+.|+++.|...+.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467777776666654442222222222 3444667777777777776654 2322222 2245677777788887777
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010575 199 RRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV-------PLNNALIDMYAKSGKIGKALQVFENM 271 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~ 271 (507)
+++.+.. +-+......+...|.+.|+++.+..++..+.+.+..++. ..|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 7777654 334556667777777778888888777777776643222 12233344344455566777777776
Q ss_pred CC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChh
Q 010575 272 KN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE 348 (507)
Q Consensus 272 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 348 (507)
.+ .++.....+...+...|+.++|..++++..+. .|+.... ++.+....++.+++.+..+...++ .+-|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 54 47778888999999999999999999998874 5555322 334445669999999999999874 355667
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
.+..+...+.+.|++++|.+.|+.+ ...|+...+..+..++.+.|+.++|.+++++.+.+.
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 7889999999999999999999998 778999999999999999999999999999997643
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=3.8e-14 Score=131.92 Aligned_cols=246 Identities=13% Similarity=0.126 Sum_probs=159.4
Q ss_pred ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHH
Q 010575 190 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL--NTIVPLNNALIDMYAKSGKIGKALQV 267 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 267 (507)
+.++|...|..... .+..+......+..+|...+++++|..+|+.+.+... -.+..+|.+.+--+-+.=.+..--+-
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 45677777777333 3344445666677777777778888777777776531 12345555554332221111111111
Q ss_pred HHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC
Q 010575 268 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 346 (507)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 346 (507)
+-.+....+.+|.++..+|.-+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+... ++.|.
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCch
Confidence 11222345677777777777777788888877777764 44 55677777777777777777777777776 33332
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 347 -IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 347 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
-..|..+.-.|.++++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|++++++++-++|.++-.-...+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 244555666777778888887777777 5666 4445555666677777778888888888777777777777777777
Q ss_pred HHcCCchHHHHHHHHHHh
Q 010575 424 AILGRWNESGKIRKVMRD 441 (507)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~ 441 (507)
...+++++|+..++++..
T Consensus 568 ~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKE 585 (638)
T ss_pred HhhcchHHHHHHHHHHHH
Confidence 777888888777777753
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=2e-12 Score=123.04 Aligned_cols=118 Identities=14% Similarity=-0.011 Sum_probs=65.8
Q ss_pred hcCChHHHHHHHHhcccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh--hHHHHHHHHHHhCCChhHHHHH
Q 010575 123 SCKCIYDARKVFDELSLRVWNVA-VWNTMVAGYAKVGDLNNARALFELMTE--KNV--ISWTTLIAGYAQMDQPNEAITL 197 (507)
Q Consensus 123 ~~g~~~~A~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~ 197 (507)
..|+++.|.+.+.+.....|+.. .+-.....+.+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666666666666655544322 233334555556666666666655432 222 1222235556666666666666
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 010575 198 FRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 241 (507)
Q Consensus 198 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 241 (507)
++.+.+.. +-+......+...+...|+++.+...+..+.+.+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 66666653 22444555666666666666666666666666653
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.2e-11 Score=113.20 Aligned_cols=261 Identities=11% Similarity=0.022 Sum_probs=212.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 010575 175 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM 254 (507)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (507)
+........-+...+++.+..++.....+.. ++....+..-|.++...|+..+-..+-..+++.- |....+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 3444455667788899999999999988764 4566666666778888888888777777777764 6667888899988
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 010575 255 YAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 331 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 331 (507)
|.-.|+..+|++.|.+...-|. ..|-.+...|+-.|..++|+..+...-+. ++-....+-.+.--|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 9999999999999998765433 68999999999999999999999887764 2222233344555688899999999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 332 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP--------FEA-NAAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
++|.++.. -.+.|+...+-+.-.....+.+.+|..+|+... ..+ -..+++.|..+|.+.+.+++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999984 334467778878777778899999999998761 111 3457888999999999999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 403 QHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 403 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++++.+.|.+..++..++-+|...|+++.|++.|.+..
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=4.5e-15 Score=134.17 Aligned_cols=253 Identities=15% Similarity=0.081 Sum_probs=66.6
Q ss_pred HHHHHccCCcHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCH
Q 010575 83 LKAVVKLSTIELGREIHCQTVGTG-LDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDL 160 (507)
Q Consensus 83 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~ 160 (507)
...+.+.|++++|.++++...... ...+...|..+.......++++.|...++++...++ +...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 344444555555555553332222 122233333333444444555555555555544432 22233333333 344444
Q ss_pred HHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010575 161 NNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN-VKPDEIAMLAALSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 161 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 237 (507)
++|.++++..-+ +++..+..++..+.+.++++++.++++...... .+.+...|..+...+.+.|+.++|...+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444443321 233444445555555555555555555544322 22344444555555555555555555555555
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010575 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 314 (507)
+.. |.+..+...++..+...|+.+++..++....+ .|...|..+..++...|+.++|+.+|++..+.. +.|+...
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~ 251 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWL 251 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccc
Confidence 543 22344445555555555555554444433322 344455555555555566666666666555431 2244555
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
..+..++...|+.++|.++.+++.
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHT----------------
T ss_pred cccccccccccccccccccccccc
Confidence 555555666666666655555443
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=1.9e-12 Score=123.14 Aligned_cols=281 Identities=11% Similarity=0.032 Sum_probs=207.0
Q ss_pred HhcCCHHHHHHHHHhcCC--CCh-hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010575 155 AKVGDLNNARALFELMTE--KNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEW 231 (507)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 231 (507)
...|+++.|.+.+.+..+ |++ ..+-....++.+.|+++.|.+.+.+..+....+...........+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 458999999999988775 332 33445567788999999999999998775322222333445778889999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHH----HHHHHHHHcCChHHHHHHHHHHHH
Q 010575 232 IHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWT----TMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
.++.+.+.. |.+..+...+...|...|+++.|.+.+..+.+. +...+. ....+....+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999986 556778889999999999999999999998853 333232 111222333333444445555554
Q ss_pred CCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhH---HHHHHHHHhhcCCHHHHHHHHhhC-CCCC
Q 010575 305 ARV---KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ---YGCMIDLLGRAGYLQEAEKLLRRM-PFEA 377 (507)
Q Consensus 305 ~g~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 377 (507)
... +.+...+..+...+...|+.++|.+++++..+. .|+... ...........++.+.+.+.+++. ...|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 421 137788888999999999999999999999974 344331 111222233457888898888877 4444
Q ss_pred C-H--HHHHHHHHHHHHcCCHHHHHHHHH--HHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 378 N-A--AIWGSLLAASNIYGDVELGECALQ--HLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 378 ~-~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+ + ....++...|.+.|++++|.+.|+ .+.+..|++ ..+..++.++.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 3 567789999999999999999999 577788884 457799999999999999999999864
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=1.1e-11 Score=119.10 Aligned_cols=420 Identities=11% Similarity=0.051 Sum_probs=262.0
Q ss_pred cccCCCCChHHHHHHHHHHHccCChhHHHHHhccCCC----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcc
Q 010575 2 IVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK----PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNY 77 (507)
Q Consensus 2 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 77 (507)
...|+.|+..||.+++.-||..|+++.|- +|..|.- -+...++.++.+..+.++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 46799999999999999999999999998 8888764 35577999999999999888776 58889
Q ss_pred cHHHHHHHHHccCCcHHHHHHHHHHHH-------cCCC-CcH-------------HHHHHHHHHHHhcCChHHHHHHHHh
Q 010575 78 SFPFVLKAVVKLSTIELGREIHCQTVG-------TGLD-SDV-------------HVVAALIQMYASCKCIYDARKVFDE 136 (507)
Q Consensus 78 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~-~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~ 136 (507)
+|..|..+|...||+..-..+-+.+.. .|.. |.. ..-...+....-.|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999987653332222221 1211 000 1112234445556778888888877
Q ss_pred cccCCCChhhHHHHHHHHHh-cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHH
Q 010575 137 LSLRVWNVAVWNTMVAGYAK-VGDLNNARALFELMTE-KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAML 214 (507)
Q Consensus 137 ~~~~~p~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 214 (507)
++....+.. ...+++-+.. ...+++-........+ +++.+|..++.+-..+|+.+.|..++.+|.+.|++.+.+-|-
T Consensus 165 ~Pvsa~~~p-~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 165 VPVSAWNAP-FQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred CCcccccch-HHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 665422111 1112332222 2334444444444444 788888888888888888888888888888888888877776
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-----------------------------
Q 010575 215 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL----------------------------- 265 (507)
Q Consensus 215 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~----------------------------- 265 (507)
.++-+ .++...+..++.-|...|+.|+..|+...+..+..+|....+.
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 66644 7778888888888888888888887766555554433221111
Q ss_pred -----------------------------------------HHHHhcCC-------CChhHHHHHHHHHHHcC-------
Q 010575 266 -----------------------------------------QVFENMKN-------KSVITWTTMIAGLALHG------- 290 (507)
Q Consensus 266 -----------------------------------------~~~~~~~~-------~~~~~~~~l~~~~~~~~------- 290 (507)
++-..+.. .++..|..++.-|.+.-
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~ 400 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSR 400 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHH
Confidence 00000000 01112222222221110
Q ss_pred ---------------ChHHHHHHHHHHHHCCCCCCH----------------------------HHHHHHHHHHhccCcH
Q 010575 291 ---------------LGREALDMFSRMERARVKPNE----------------------------ITFIAILSACCHVGLV 327 (507)
Q Consensus 291 ---------------~~~~A~~~~~~m~~~g~~p~~----------------------------~~~~~l~~~~~~~g~~ 327 (507)
...+..++... ..||. ..-+.++..|++.-+.
T Consensus 401 i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 401 IYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred HHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00011111110 01111 1112233333333333
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 328 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP-----FEANAAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
.+++..-+..... - -...|..|++.+......+.|..+.++.. ...+..-+..+.....+.+....+..++
T Consensus 476 lK~l~~~ekye~~-l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 476 LKILCDEEKYEDL-L---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHH-H---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 3333332222221 1 12567888999999999999999998883 3345566778888889999999999999
Q ss_pred HHHhc---cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010575 403 QHLIK---LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 446 (507)
Q Consensus 403 ~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (507)
+++.+ ..|........+.......|+.+.-.++.+-+...|+.-
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 98865 334444566677777788899999888888888777754
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=4.4e-11 Score=107.58 Aligned_cols=387 Identities=10% Similarity=0.003 Sum_probs=252.0
Q ss_pred HHHHHHHHccCChhHHHHHhccCCC--CC-cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHcc
Q 010575 14 SRFIDSCSSLGFSDYAYSIFTHKSK--PD-VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDN-YSFPFVLKAVVKL 89 (507)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~ 89 (507)
....+-|-+.|++++|++.+..... |+ +.-|.....+|...|++++..+---..++ +.|+- ..+..-..++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhh
Confidence 3445566788999999999998654 77 77788899999999999998887777666 44542 1233333455567
Q ss_pred CCcHHHHHHHHHH-HHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHh-cccCCCChhhHHHHHHHHHh-----------
Q 010575 90 STIELGREIHCQT-VGTGLDSDVHVVAALIQMYASCKCIYDARKVFDE-LSLRVWNVAVWNTMVAGYAK----------- 156 (507)
Q Consensus 90 ~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~p~~~~~~~li~~~~~----------- 156 (507)
|++++|+.=..-. +-.|+. |..+--.+=+.+-+.| ..++.+-+.. -...-|+.....+....+..
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 7777664221111 111111 1111111111111111 1112222220 00002222222222222211
Q ss_pred --------------c---CCHHHHHHHHHhcCC-----C-----C------hhHHHHHHHHHHhCCChhHHHHHHHHHhH
Q 010575 157 --------------V---GDLNNARALFELMTE-----K-----N------VISWTTLIAGYAQMDQPNEAITLFRRMQV 203 (507)
Q Consensus 157 --------------~---~~~~~A~~~~~~~~~-----~-----~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 203 (507)
. ..+..|...+.+-.. + | ..+.......+.-.|+.-.|..-|+....
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1 123333333322110 1 1 11222222334567889999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHH
Q 010575 204 ENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWT 280 (507)
Q Consensus 204 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 280 (507)
....++. .|.-+...|....+.++....|+...+.+ +.++.+|..-.+.+.-.+++++|..-|++...- ++..|-
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 6544333 27777888999999999999999999887 566777888888888889999999999988763 456777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---------hhHHH
Q 010575 281 TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK---------IEQYG 351 (507)
Q Consensus 281 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~ 351 (507)
.+..+..+.+++++++..|++..+. ++--+..|+.....+..+++++.|.+.|+..++ +.|+ +.+..
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhh
Confidence 7777788899999999999999886 555678899999999999999999999999984 3343 22222
Q ss_pred HHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 352 CMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
+++..- -.+++..|..+++++ .+.| ....|..|...-.+.|+.++|+++|++...+...
T Consensus 509 a~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 509 ALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 333222 348999999999998 5666 4568899999999999999999999998765443
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.5e-11 Score=104.82 Aligned_cols=294 Identities=14% Similarity=0.088 Sum_probs=167.9
Q ss_pred cCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-CCh------hHHHHHHHHHHhCCChhHHH
Q 010575 124 CKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE-KNV------ISWTTLIAGYAQMDQPNEAI 195 (507)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~li~~~~~~~~~~~a~ 195 (507)
+.+.++|...|-+|.+..| +..+.-+|.+.|-+.|..+.|+++-+.+.+ ||. .+...|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3455666666666655533 333444555555555666666655555543 332 12334556667777777777
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 010575 196 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS 275 (507)
Q Consensus 196 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 275 (507)
.+|..+.+.+ .--......++..|-...++++|+.+-.++.+.+-++... .+...
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAqf--------------------- 182 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQF--------------------- 182 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHHH---------------------
Confidence 7777776644 1233344555666666666666666666655554332211 11222
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 276 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
|.-+...+....+.+.|..++.+..+...+ ....-..+.+.....|+++.|.+.++.+.+. +..--+.+...|..
T Consensus 183 ---yCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~ 257 (389)
T COG2956 183 ---YCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYE 257 (389)
T ss_pred ---HHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence 233444555556677777777776664221 2233334555666777777777777777655 22223455666777
Q ss_pred HHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH---HcCCchH
Q 010575 356 LLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA---ILGRWNE 431 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~ 431 (507)
+|...|+.++....+.++ ...+....-..+...-....-.+.|...+.+-+...|. ...+..+++... .-|.+.+
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k~ 336 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAKE 336 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchhh
Confidence 777777777777777665 34445544555554444555566677777777777777 344444444332 2356788
Q ss_pred HHHHHHHHHhCCCccCC
Q 010575 432 SGKIRKVMRDMGVKKMP 448 (507)
Q Consensus 432 A~~~~~~~~~~~~~~~~ 448 (507)
.+..++.|....++..|
T Consensus 337 sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 337 SLDLLRDMVGEQLRRKP 353 (389)
T ss_pred hHHHHHHHHHHHHhhcC
Confidence 88888888766555444
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.6e-10 Score=101.70 Aligned_cols=275 Identities=13% Similarity=-0.001 Sum_probs=149.4
Q ss_pred CChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC--C--hhHHHHHHHHHHhCCChhHHHHHHH
Q 010575 125 KCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEK--N--VISWTTLIAGYAQMDQPNEAITLFR 199 (507)
Q Consensus 125 g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~~~~~~a~~~~~ 199 (507)
|++.+|++...+-.+..+ ....|..-..+.-+.|+.+.+-.++.+..++ | ....-+........|++..|..-..
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 555555555544443332 2233333344444445555555554444432 1 2223334444455555555555555
Q ss_pred HHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 200 RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV-------PLNNALIDMYAKSGKIGKALQVFENMK 272 (507)
Q Consensus 200 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 272 (507)
++.+.+. -+.........+|.+.|++.....++..+.+.+.-.+. .+++.+++-....+..+.-...++...
T Consensus 178 ~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 5554432 22333444445555555555555555555555433222 233334433333333333334444444
Q ss_pred C---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhH
Q 010575 273 N---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ 349 (507)
Q Consensus 273 ~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 349 (507)
. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+- ...-.+.+.++...-++..+.-.+.++. ++..
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L 330 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLL 330 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhH
Confidence 2 34555556666677777777777777777776655551 1222345666666666666666654333 3356
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
+..|...|.+.+.+.+|.+.|+.. +..|+..+|..+..++.+.|+.++|.++.++.+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 666777777777777777777765 666777777777777777777777777777764
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2.5e-11 Score=103.52 Aligned_cols=281 Identities=12% Similarity=0.065 Sum_probs=158.6
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCChHHH
Q 010575 54 TDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDS---DVHVVAALIQMYASCKCIYDA 130 (507)
Q Consensus 54 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 130 (507)
++++++|+++|-+|.+.. +-+..+..+|.+.|.+.|..+.|.++.+.+.++.--+ -....-.|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888887722 1233344566677778888888888887776642111 122344556667777777777
Q ss_pred HHHHHhcccC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--------HHHHHHHHHHhCCChhHHHHHHHHH
Q 010575 131 RKVFDELSLR-VWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI--------SWTTLIAGYAQMDQPNEAITLFRRM 201 (507)
Q Consensus 131 ~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~m 201 (507)
+.+|..+.+. ..-......|+..|-...+|++|+++-+++.+.+.. .|.-|...+....+.+.|..++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7777777664 224455666677777777777777766655542222 2334444555566666666666666
Q ss_pred hHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHH
Q 010575 202 QVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITW 279 (507)
Q Consensus 202 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 279 (507)
.+.+. .....-..+.+.....|+++.|.+.++.+.+.+...-..+...|..+|...|+.++....+..+.+ ++...-
T Consensus 207 lqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 207 LQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 65432 122222234455566666666666666666665544455556666666666666666666665554 233333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhH
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH---VGLVELGRRYFNIMK 338 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 338 (507)
..+...-....-.+.|...+.+-... +|+...+..++..... .|...+....++.|.
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 33433333334444555544444433 5666666666654432 223344444444444
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=1.4e-10 Score=102.09 Aligned_cols=276 Identities=12% Similarity=0.103 Sum_probs=217.3
Q ss_pred cCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010575 157 VGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIH 233 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 233 (507)
.|++..|+++..+-.+. ....|..-+.+.-+.|+.+.+-.++.+.-+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 79999999999886652 334555566777889999999999999987533556666777778889999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHH
Q 010575 234 NYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-----------ITWTTMIAGLALHGLGREALDMFSRM 302 (507)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~m 302 (507)
..+.+.+ +.++.+......+|.+.|++.....++..+.+.+. .+|+.++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9998887 56677888899999999999999999999987432 36777777666666666666677776
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHH
Q 010575 303 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAA 380 (507)
Q Consensus 303 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~ 380 (507)
... .+-++..-..++.-+.+.|+.++|.++.++..++ +..|+.. ..-.+.+-++...-.+..++. . ...++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 554 4556667778888899999999999999999887 6666622 122344556665555555444 1 122447
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+.+|...|.+.+.+.+|...|+.+++..|+ ...|..+++++.+.|+..+|.+..++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7889999999999999999999999999998 7789999999999999999999998875
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.49 E-value=1.7e-11 Score=108.13 Aligned_cols=196 Identities=14% Similarity=0.075 Sum_probs=156.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
...+..+...|...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45556677777788888888888776654 245677778888888899999999998888763 33556777788888
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~ 399 (507)
...|++++|...++.+......+.....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999998864222334556777888899999999999999887 3334 4667888888999999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 400 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..++++++..|+++..+..++.++...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999888888888888999999999999999999888753
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.6e-10 Score=102.55 Aligned_cols=416 Identities=11% Similarity=0.028 Sum_probs=288.8
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHhcc--CCCCCcccHHHHHHHHHcCCCchHHHHHHHHH----HHc--------
Q 010575 5 GLDQNNHLLSRFIDSCSSLGFSDYAYSIFTH--KSKPDVYLYNTTIKALCQTDNPLNAVILYNKI----QAS-------- 70 (507)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~-------- 70 (507)
|+..||.-.--++++|.-.|..+.|..+... +.+.|..+.......+.+..++++|..++..- ..-
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~ 123 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAA 123 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhh
Confidence 3445555555678888888888888777654 55678888888888889999999999988822 110
Q ss_pred -CCCCCccc----HHHHH-------HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc--------------
Q 010575 71 -ALRPDNYS----FPFVL-------KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASC-------------- 124 (507)
Q Consensus 71 -~~~p~~~~----~~~l~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------- 124 (507)
-+.+|..- -+.-. ..|....++++|...|.+.+...+. +...+..++....-.
T Consensus 124 ~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a 202 (611)
T KOG1173|consen 124 NTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDLA 202 (611)
T ss_pred ceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccHH
Confidence 01111111 01111 2233455677777777777655432 222222222221111
Q ss_pred ----CChHHHHHHHHhc----ccC-----CC---------ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHH
Q 010575 125 ----KCIYDARKVFDEL----SLR-----VW---------NVAVWNTMVAGYAKVGDLNNARALFELMTEKNV---ISWT 179 (507)
Q Consensus 125 ----g~~~~A~~~~~~~----~~~-----~p---------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~ 179 (507)
.+.+.-...|+-. ... .| +......-..-+...+++.+..++++...+.|+ ..+.
T Consensus 203 ~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~ 282 (611)
T KOG1173|consen 203 MLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP 282 (611)
T ss_pred hhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH
Confidence 1111222223211 000 11 233344445666778999999999999887544 5566
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 259 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 259 (507)
.-|.++...|+..+-..+=.++++. .+....+|-++.--|...|+.++|..+|.+....+ +.-...|-.+...|...|
T Consensus 283 ~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 283 LHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEG 360 (611)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcc
Confidence 6677889999999888888888876 34567788888888888899999999999888665 333567888999999999
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 010575 260 KIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNI 336 (507)
Q Consensus 260 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (507)
..+.|+..|....+ .....+--+..-|.+.++..-|...|.+.... .+-|+..++-+.-.....+.+.+|..+|+.
T Consensus 361 EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 99999998877654 22233444666788899999999999998765 234667777777667778999999999998
Q ss_pred hHHhh-CCC----CChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 337 MKSRY-GIE----PKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 337 ~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
..... .+. .-..+++.|..+|.+.+.+++|+..+++. -.+.+..++.++.-.|...|+++.|+..|.+++.+.
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 87321 111 13456889999999999999999999988 334588899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHH
Q 010575 410 PHNSGNYAILSNIYA 424 (507)
Q Consensus 410 p~~~~~~~~l~~~~~ 424 (507)
|++..+-..|..+..
T Consensus 520 p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 520 PDNIFISELLKLAIE 534 (611)
T ss_pred CccHHHHHHHHHHHH
Confidence 998776666655443
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=1.3e-09 Score=101.56 Aligned_cols=422 Identities=14% Similarity=0.172 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHhccCCC-----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 010575 11 HLLSRFIDSCSSLGFSDYAYSIFTHKSK-----PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKA 85 (507)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 85 (507)
..|...+..+.++|++..-+.+|+.... .....|...+.-....+-++.++.+|++.++ +.|. .-.--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~--~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPE--AREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHH--HHHHHHHH
Confidence 4555566666666666666666655321 2234466666655566666666666666555 2232 23444455
Q ss_pred HHccCCcHHHHHHHHHHH----------------------------------------HcCC--CCc--HHHHHHHHHHH
Q 010575 86 VVKLSTIELGREIHCQTV----------------------------------------GTGL--DSD--VHVVAALIQMY 121 (507)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~----------------------------------------~~~~--~~~--~~~~~~l~~~~ 121 (507)
++..+++++|.+.+...+ +.|+ -+| ...|.+|.+-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 555555555544444332 1111 112 24567777777
Q ss_pred HhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcC----------------------CHHHHHHHHHhcCCC------
Q 010575 122 ASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVG----------------------DLNNARALFELMTEK------ 173 (507)
Q Consensus 122 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~----------------------~~~~A~~~~~~~~~~------ 173 (507)
.+.|.+++|..+|++.......+.-++.+.+.|++.. +++-....|+.+...
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 7777777777777776554333333444444443310 111222222222211
Q ss_pred ---------ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCC------CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010575 174 ---------NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP------DEIAMLAALSACAQLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 174 ---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 238 (507)
++..|..- .-+..|+..+-...|.+..+. +.| -...+..+.+.|-..|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 11112111 112344555566666665543 122 123455666666677777777777776666
Q ss_pred cCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---C------------------ChhHHHHHHHHHHHcCChHH
Q 010575 239 YGLNTI---VPLNNALIDMYAKSGKIGKALQVFENMKN---K------------------SVITWTTMIAGLALHGLGRE 294 (507)
Q Consensus 239 ~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~------------------~~~~~~~l~~~~~~~~~~~~ 294 (507)
...+.- ..+|..-...=.+..+++.|+++.+.... + +...|...+...-..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 543322 34555555555666666666666655431 0 12234444433333444444
Q ss_pred HHHHHHHHHH----------------------------------CCCCCCH-HHHHHHHHHHh---ccCcHHHHHHHHHH
Q 010575 295 ALDMFSRMER----------------------------------ARVKPNE-ITFIAILSACC---HVGLVELGRRYFNI 336 (507)
Q Consensus 295 A~~~~~~m~~----------------------------------~g~~p~~-~~~~~l~~~~~---~~g~~~~a~~~~~~ 336 (507)
...+++++.+ .-..|+. ..|+..+.-+. ....++.|..+|++
T Consensus 496 tk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 4444444333 2222333 23443333322 22467788888888
Q ss_pred hHHhhCCCCChhH--HHHHHHHHhhcCCHHHHHHHHhhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 337 MKSRYGIEPKIEQ--YGCMIDLLGRAGYLQEAEKLLRRM--PFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 337 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
+.+ +.+|...- |......=.+.|-...|+++++++ ++++. ...|+..|.--...=-+..-..+|+++++.-|
T Consensus 576 aL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp 653 (835)
T KOG2047|consen 576 ALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP 653 (835)
T ss_pred HHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC
Confidence 876 66654322 222222223457777888888877 23332 23566665533332233444567777777766
Q ss_pred CCC--chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 411 HNS--GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 411 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
++- ......++.-.+.|..+.|..++....+
T Consensus 654 ~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 654 DSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 632 2334556666777888888888866643
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.8e-09 Score=93.38 Aligned_cols=398 Identities=11% Similarity=0.017 Sum_probs=246.9
Q ss_pred hHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHH-HHcCC-CchHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 010575 10 NHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKA-LCQTD-NPLNAVILYNKIQASALRPDNYSFPFVLKAVV 87 (507)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 87 (507)
...--..+..|...++-..|..++...++.-...-+.|+-+ +.+.| +-.++.--+......- | ... ..|.+..
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p--~aL-~~i~~ll 171 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--P--MAL-QVIEALL 171 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc--c--hHH-HHHHHHH
Confidence 33444566677777888888888877776433333333333 33222 2222222222222210 0 001 1111111
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh--cCChHHHHH--HHHhcccCCC-ChhhHHHHHHHHHhcCCHHH
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS--CKCIYDARK--VFDELSLRVW-NVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~--~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~ 162 (507)
+.+ +..+...=..|-.....|+..+....+.+++. .++...|.. ++-+.....| |+.....+..++...|+.++
T Consensus 172 ~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~ 250 (564)
T KOG1174|consen 172 ELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQ 250 (564)
T ss_pred HHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchH
Confidence 110 01111111122222233444444444444433 344334433 3334444444 67778888888888999999
Q ss_pred HHHHHHhcCCCChhHHH---HHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 010575 163 ARALFELMTEKNVISWT---TLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 239 (507)
Q Consensus 163 A~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 239 (507)
|+..|++..--|+.+.. ...-.+.+.|++++...+...+.... .-+...|-.-+......++++.|..+-++.++.
T Consensus 251 a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 251 AEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 99988887754443322 23344567788888877777765432 122223333334445667888888888887776
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010575 240 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA 316 (507)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 316 (507)
+ +.++..+-.-..++...++.++|.-.|+.... -+...|.-|+.+|...|++.+|...-+...+. +..+..+...
T Consensus 330 ~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL 407 (564)
T KOG1174|consen 330 E-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL 407 (564)
T ss_pred C-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh
Confidence 5 44555555556778888999999888887543 36789999999999999999998887776654 3445666665
Q ss_pred HH-HHHh-ccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHc
Q 010575 317 IL-SACC-HVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIY 392 (507)
Q Consensus 317 l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~ 392 (507)
+. ..|. ....-++|..++++.. .+.|+ ....+.+...+...|+.+.++.++++. ...||....+.|...+...
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQ 484 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 53 3333 3344678888888877 44565 455667778888999999999999987 6788999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHH
Q 010575 393 GDVELGECALQHLIKLEPHNSGNYAIL 419 (507)
Q Consensus 393 g~~~~A~~~~~~~~~~~p~~~~~~~~l 419 (507)
+.+++|+..|..+++++|++..+...|
T Consensus 485 Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 999999999999999999976544443
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=3.2e-10 Score=107.03 Aligned_cols=231 Identities=16% Similarity=0.171 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----CC-CCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C
Q 010575 210 EIAMLAALSACAQLGAVELGEWIHNYIEQY-----GL-NTI-VPLNNALIDMYAKSGKIGKALQVFENMKN--------K 274 (507)
Q Consensus 210 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~ 274 (507)
..+...+...|...|+++.|..+++..++. |. .|. ....+.+...|...+++.+|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777777778888877777766654 21 122 22334466778888888888888887653 1
Q ss_pred C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhC--
Q 010575 275 S---VITWTTMIAGLALHGLGREALDMFSRMERA-----RV-KPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYG-- 342 (507)
Q Consensus 275 ~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 342 (507)
+ ..+++.|...|.+.|++++|...+++..+- |. .|.. ..++.+...|...+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 247777888888999988888888776531 22 2222 2456677788899999999999988776433
Q ss_pred CCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC---------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-
Q 010575 343 IEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK- 407 (507)
Q Consensus 343 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 407 (507)
..++ ..+++.|...|...|++++|.++++++ +..+ ....++.+..+|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 357889999999999999999999887 1122 244678888899999999999999998854
Q ss_pred ---cCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 408 ---LEPHNS---GNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 408 ---~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+|+++ ..|..|+.+|.+.|++++|+++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 456654 468899999999999999999998886
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=1.3e-09 Score=103.68 Aligned_cols=417 Identities=13% Similarity=0.052 Sum_probs=240.3
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHH
Q 010575 6 LDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPF 81 (507)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ 81 (507)
++-|+.+|..|.-++...|+++.+-+.|++... .....|+.+...+...|.-..|+.+++.-....-.| |+..+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345777777777777888888888888877543 345567777777777788777887777654422123 3333333
Q ss_pred HHHHHH-ccCCcHHHHHHHHHHHHcC--C--CCcHHHHHHHHHHHHhc-----------CChHHHHHHHHhcccCCC-Ch
Q 010575 82 VLKAVV-KLSTIELGREIHCQTVGTG--L--DSDVHVVAALIQMYASC-----------KCIYDARKVFDELSLRVW-NV 144 (507)
Q Consensus 82 l~~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p-~~ 144 (507)
.-..|. +.+..++++.+-.+.+... . ......|..+.-+|... ....++++.+++..+..| |.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 334443 4566666666666655521 1 11223333333333321 113356666666655544 33
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 010575 145 AVWNTMVAGYAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 220 (507)
Q Consensus 145 ~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 220 (507)
...-.+.--|+..++++.|.+..++..+ .+...|..|.-.+...+++.+|+.+.+.....- .-|..-...-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 3333333344555666666666555443 345666666666666666666666666554421 11111111111122
Q ss_pred hccCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHHcC---
Q 010575 221 AQLGAVELGEWIHNYIEQYG-LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN------KSVITWTTMIAGLALHG--- 290 (507)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~--- 290 (507)
...++.+++......+...- -.+. ....++-....+....+.- ..+.++..+..-....+
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 22344444444433333210 0000 0011112222223222211 11122322222211111
Q ss_pred ChHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 010575 291 LGREALDMFSRMERARVK--PN------EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 362 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~--p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (507)
.++.. +...-.. |+ ...|......+.+.+..++|...+.++.+ -.+.....|......+...|+
T Consensus 628 ~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 628 GSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred ccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHh
Confidence 11111 2211122 22 12344555677888999999988888875 334566778778888999999
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 363 LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGEC--ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 363 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
.++|.+.|... .+.| ++.+..++...+...|+..-|.. ++..+++++|.++.+|..++.++.+.|+.++|.+.|..
T Consensus 700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 99999999887 5666 45688999999999998888888 99999999999999999999999999999999999988
Q ss_pred HHh
Q 010575 439 MRD 441 (507)
Q Consensus 439 ~~~ 441 (507)
..+
T Consensus 780 a~q 782 (799)
T KOG4162|consen 780 ALQ 782 (799)
T ss_pred HHh
Confidence 753
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=9e-11 Score=112.92 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCC
Q 010575 62 ILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRV 141 (507)
Q Consensus 62 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 141 (507)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|..|.-.....+...++.++......++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 34556666777777777777777777777777777 7777766666666677777777777777665554 4
Q ss_pred CChhhHHHHHHHHHhcCCHHH
Q 010575 142 WNVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 142 p~~~~~~~li~~~~~~~~~~~ 162 (507)
|...+|..|..+|...||+..
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH
Confidence 566777777777777777654
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=1.2e-11 Score=105.42 Aligned_cols=229 Identities=14% Similarity=0.111 Sum_probs=140.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 258 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (507)
+.+..+|.+.|.+.+|.+.|+.-++. .|-..||..+-++|.+..++..|..++.+-++.- +.++.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 45667777777777777777776664 3555667677777777777777777776665542 44444444445555555
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 010575 259 GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 335 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (507)
++.++|.++|+...+ .++.+..++..+|.-.++++-|+..++++...|+. ++..|+.+.-+|.-.+.++.++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555555443 23333444444455555555555555555555443 44445555545555555555554444
Q ss_pred HhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 336 IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
+.... --.|+ .-...|..+.......||+..|.+.|+-++..+|++..+
T Consensus 383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 44432 11111 123456666666667788888888888888888888888
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 416 YAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+++|+-.-.+.|+.++|..++....+.
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888888888888888888888777543
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=5.9e-09 Score=99.85 Aligned_cols=409 Identities=13% Similarity=0.073 Sum_probs=222.7
Q ss_pred HHHHHHccCChhHHHHHhccCCC--CC-cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHH-c---
Q 010575 16 FIDSCSSLGFSDYAYSIFTHKSK--PD-VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVV-K--- 88 (507)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~--- 88 (507)
....+...|++++|++.++.... .| ..........+.+.|+.++|..+|..+++.+ |+...|...+..+. .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 44556777888888888876544 33 3445556667777888888888888888755 66655555444443 1
Q ss_pred --cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChH-HHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010575 89 --LSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIY-DARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARA 165 (507)
Q Consensus 89 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 165 (507)
..+.+...++++++...-+..+. ...+.-.+.....+. .+...+.....++ -+.+++.+-..|......+-..+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~--~~rl~L~~~~g~~F~~~~~~yl~~~l~Kg-vPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDA--PRRLPLDFLEGDEFKERLDEYLRPQLRKG-VPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccc--hhHhhcccCCHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHcChhHHHHHHH
Confidence 12456666777777665432222 212211122212222 2333333333331 22345555555554444444444
Q ss_pred HHHhcCC------------------CCh--hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhccC
Q 010575 166 LFELMTE------------------KNV--ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLG 224 (507)
Q Consensus 166 ~~~~~~~------------------~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~ 224 (507)
++..... |.. .++..+...|-..|++++|++++++..+. .|+ ...|..-.+.+-..|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 4444321 111 23455666777777777777777777765 333 456666677777777
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh----------HH--HHHHHHHHHcCCh
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI----------TW--TTMIAGLALHGLG 292 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~~ 292 (507)
++.+|...++.....+ .-|..+-+..+..+.++|+.++|.+++....+++.. .| .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7777777777777665 455566666667777777777777777766654311 22 2345667777777
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC--------
Q 010575 293 REALDMFSRMERA--RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY-------- 362 (507)
Q Consensus 293 ~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------- 362 (507)
..|+..|....+. .+.-|..-|.. -|.+.+-+..=.++++---.-++-+.-......++..|.+.-+
T Consensus 322 ~~ALk~~~~v~k~f~~~~~DQfDFH~---Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~ 398 (517)
T PF12569_consen 322 GLALKRFHAVLKHFDDFEEDQFDFHS---YCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGE 398 (517)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHH---HHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 7777777766542 12223222221 2344443332222222111110111112223344444432100
Q ss_pred --------H--HHHHHHHhhC----------------------------------CCCCCHHHHHHHHHHHHHc-CCHHH
Q 010575 363 --------L--QEAEKLLRRM----------------------------------PFEANAAIWGSLLAASNIY-GDVEL 397 (507)
Q Consensus 363 --------~--~~A~~~~~~~----------------------------------~~~~~~~~~~~l~~~~~~~-g~~~~ 397 (507)
. .+..+.-.+. +...|.. .+..-+... .-.++
T Consensus 399 ~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~ 475 (517)
T PF12569_consen 399 EQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEE 475 (517)
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCC---ccHHHHhcCCcHHHH
Confidence 0 0000110000 0000110 111112222 24688
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 398 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
|.++++.+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 476 A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 476 AMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 99999999999999999999999999999999988887754
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.38 E-value=4.6e-08 Score=91.53 Aligned_cols=418 Identities=11% Similarity=0.063 Sum_probs=257.3
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCCcccHHHHH
Q 010575 5 GLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQAS-ALRPDNYSFPFVL 83 (507)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~l~ 83 (507)
++.|+...|..+-++ ++.++-++.+|+ ..|-..+..+..+|++......|+..+.. .+......|...+
T Consensus 76 ~~~~T~~~~~~vn~c------~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNC------FERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHH------HHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 344554455444333 344555555554 45888888889999999999999998763 2333456788888
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC-------CC-ChhhHHHHHHHHH
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR-------VW-NVAVWNTMVAGYA 155 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p-~~~~~~~li~~~~ 155 (507)
.-....+-++.+.++++..++..+ ..-+..+..+++.+++++|.+.+..+... ++ +...|..+.+...
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKVAP----EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 888889999999999999987643 33567788899999999999999887554 22 3334444444333
Q ss_pred hcCCHH---HHHHHHHhcCC--CC--hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHH--------
Q 010575 156 KVGDLN---NARALFELMTE--KN--VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC-------- 220 (507)
Q Consensus 156 ~~~~~~---~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-------- 220 (507)
+..+.- ....+++.+.. +| ...|++|..-|.+.|.+++|..+|++....- .+..-|+.+.++|
T Consensus 222 ~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~ 299 (835)
T KOG2047|consen 222 QNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCV 299 (835)
T ss_pred hCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHH
Confidence 322211 22233333332 11 2344455555555555555554444433221 1111111111111
Q ss_pred ----------------------------------------------------------hccCCHHHHHHHHHHHHHcCC-
Q 010575 221 ----------------------------------------------------------AQLGAVELGEWIHNYIEQYGL- 241 (507)
Q Consensus 221 ----------------------------------------------------------~~~~~~~~a~~~~~~~~~~~~- 241 (507)
...|+..+-...+.++++.--
T Consensus 300 ~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP 379 (835)
T KOG2047|consen 300 AAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDP 379 (835)
T ss_pred HHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCc
Confidence 122344445555555554311
Q ss_pred ----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-
Q 010575 242 ----NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-------ITWTTMIAGLALHGLGREALDMFSRMERARVKP- 309 (507)
Q Consensus 242 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p- 309 (507)
-.-...|..+...|-..|+++.|+.+|++..+-+- .+|..-...-.++.+++.|+.+++......-.|
T Consensus 380 ~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~ 459 (835)
T KOG2047|consen 380 KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE 459 (835)
T ss_pred ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence 11234667788889999999999999998877322 356666666677888999999888775431111
Q ss_pred ----------------CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 310 ----------------NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 310 ----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
+...|...+......|-++....+++++.+-.- .++...-.....+..+.-++++.++|++-
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--aTPqii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--ATPQIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 122344555555566788888888888886422 23333333444455677789999999886
Q ss_pred -C--CCCCH-HHHHHHHHHHH---HcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 374 -P--FEANA-AIWGSLLAASN---IYGDVELGECALQHLIKLEPHN--SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 374 -~--~~~~~-~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+ .-|+. ..|+..+.-+. .....+.|..+|+++++..|.. .++|...+..-.+-|.-..|+.++++.-
T Consensus 538 I~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 538 ISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 23444 36777766543 2347899999999999988752 2345555666667788888888888763
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=3.4e-10 Score=112.08 Aligned_cols=258 Identities=13% Similarity=0.011 Sum_probs=184.6
Q ss_pred ChhHHHHHHHHHHh-----CCChhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHh---------ccCCHHHHHHHHHHHHH
Q 010575 174 NVISWTTLIAGYAQ-----MDQPNEAITLFRRMQVENVKPD-EIAMLAALSACA---------QLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 174 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 238 (507)
+...|...+.+-.. .+.+++|...|++..+.. |+ ...+..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555554321 234678999999998753 44 444555544433 23458899999999998
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 010575 239 YGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE-ITF 314 (507)
Q Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~ 314 (507)
.+ +.+...+..+...+...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 55677888888889999999999999998775 3 4567888899999999999999999999886 3432 233
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHH-HHHHHHHHHHH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAA-IWGSLLAASNI 391 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~ 391 (507)
..++..+...|++++|...++++... .+| ++..+..+..++...|++++|...++++ +..|+.. .++.+...|..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34444566689999999999998763 234 4556777888899999999999999988 4455544 34555556666
Q ss_pred cCCHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 392 YGDVELGECALQHLIK---LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
.| ++|...++++++ ..|.++. .+..+|.-.|+-+.+..+ +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 66 477777777755 3444433 366677788888888777 77765543
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4.2e-08 Score=90.99 Aligned_cols=409 Identities=15% Similarity=0.127 Sum_probs=220.9
Q ss_pred HHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHH--Hcc
Q 010575 15 RFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAV--VKL 89 (507)
Q Consensus 15 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~ 89 (507)
+=++.+...|++++|.+...++.. .+...+..=+-++.+.+++++|+.+.+.-.. ...+..-+ +=.+| .+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHc
Confidence 345666788889999988877654 3556677777788888999999866554221 01111111 23344 478
Q ss_pred CCcHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHhcccCC-CC------------------------
Q 010575 90 STIELGREIHCQTVGTGLDSD-VHVVAALIQMYASCKCIYDARKVFDELSLRV-WN------------------------ 143 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~------------------------ 143 (507)
+..++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.... ++
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 88888888877 33333 3355556677888899999999988885441 11
Q ss_pred ----hhhHHHHH---HHHHhcCCHHHHHHHHHhcC--------CCCh----------hHHHHHHHHHHhCCChhHHHHHH
Q 010575 144 ----VAVWNTMV---AGYAKVGDLNNARALFELMT--------EKNV----------ISWTTLIAGYAQMDQPNEAITLF 198 (507)
Q Consensus 144 ----~~~~~~li---~~~~~~~~~~~A~~~~~~~~--------~~~~----------~~~~~li~~~~~~~~~~~a~~~~ 198 (507)
..+|..+. ..+...|++.+|+++++... +.|. ..--.|..++...|+.++|.++|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 11222221 22233455555555554441 0000 01112333344455555555555
Q ss_pred HHHhHCCCCCCHHHHHHHHHH---HhccCC-HH-HHHHHH------------HHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 199 RRMQVENVKPDEIAMLAALSA---CAQLGA-VE-LGEWIH------------NYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~~~ll~~---~~~~~~-~~-~a~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
...+..+ .+|........+- ...-.+ ++ .+...+ ..+... -......-+.++..| .+.-
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~--tnk~ 323 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALF--TNKM 323 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHH--hhhH
Confidence 5554443 2232211111111 100000 00 000000 000000 000000111122222 2333
Q ss_pred HHHHHHHHhcCCCC-hhHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH---
Q 010575 262 GKALQVFENMKNKS-VITWTTMIAGLA--LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN--- 335 (507)
Q Consensus 262 ~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--- 335 (507)
+.+.++-....... ...+..++.... +...+.++.+++....+....-.....-..+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44444444444322 233444443332 223577888888877665222223444556667788999999999998
Q ss_pred -----HhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 010575 336 -----IMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--------PFEAN-AAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 336 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
.+.+. +..| .+...+...+.+.++.+.|..++..+ ...+. ..++..+...-.+.|+.++|..+
T Consensus 404 ~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 404 ESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44432 3333 44455777777777766666665544 22221 22333344444678999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 402 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++++++.+|++..+...++.+|++. +.+.|..+-+.+.
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 9999999999999999999999887 5677887776664
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=6.5e-10 Score=97.92 Aligned_cols=198 Identities=17% Similarity=0.089 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMY 255 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (507)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...++...+.. +.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~------------ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN------------ 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC------------
Confidence 345555555566666666666665555432 2223344444444555555555555555444432 12
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHH
Q 010575 256 AKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYF 334 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (507)
+...+..+...+...|++++|...+++.......| ....+..+..++...|++++|...+
T Consensus 98 -------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 98 -------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred -------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22344444555555555555555555555432111 2234444555566666666666666
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 335 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
++.... .+.+...+..+...+...|++++|...+++. .. ..+...+..++..+...|+.+.|..+.+.+.+.
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666542 2223445556666666666666666666655 11 224445555555666667777776666665444
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.4e-08 Score=85.87 Aligned_cols=297 Identities=11% Similarity=-0.000 Sum_probs=214.5
Q ss_pred cCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHH-HHHHHHHHHhccCCHHHHH
Q 010575 157 VGDLNNARALFELMT-----EKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGE 230 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~ 230 (507)
.++-..|..++-.+. ..|+.....+...+...|+.++|+..|++.+.. .|+.. .+....-.+.+.|+.+...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 444444444443332 246777888999999999999999999998764 34332 2222233456778888877
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 010575 231 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARV 307 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 307 (507)
.+...+.... ..+...|-.-.......++++.|..+-++..+ +++..+-.-...+...|+.++|.-.|+..+..
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-- 363 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-- 363 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc--
Confidence 7777666443 12222232333445566788889888887665 45556666667888999999999999998875
Q ss_pred CC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHH-HHHh-hcCCHHHHHHHHhhC-CCCCC-HHHH
Q 010575 308 KP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI-DLLG-RAGYLQEAEKLLRRM-PFEAN-AAIW 382 (507)
Q Consensus 308 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~~~-~~~~ 382 (507)
.| +...|..|+.+|...|.+.+|...-..... -++.+..+.+.+. ..+. .-.--++|.+++++. ..+|+ ....
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV 441 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAV 441 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHH
Confidence 44 668999999999999999999888777765 3344555555442 2222 223458899999887 66775 4466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEE
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEF 462 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (507)
+.+...|...|..+.++.++++.+...|+ ......|++.+...+.+.+|.+.|.....
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------- 499 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------- 499 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh---------------------
Confidence 77788899999999999999999999998 67899999999999999999999988863
Q ss_pred EeCCCCCCChHHHHHHHHHHHHHHH
Q 010575 463 VAGDTSHPDFDRLYQILCKINGQMK 487 (507)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~~~~~~~ 487 (507)
.+|+++....-+..+.++++
T Consensus 500 -----~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 500 -----QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -----cCccchHHHHHHHHHHhccC
Confidence 35666777777776666665
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=6.9e-10 Score=104.84 Aligned_cols=231 Identities=15% Similarity=0.103 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHC-----C-CCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHc-----C--C
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVE-----N-VKPDEIAM-LAALSACAQLGAVELGEWIHNYIEQY-----G--L 241 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~ 241 (507)
.+...+...|...|+++.|..+++..++. | ..|...+. ..+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35556889999999999999999987764 2 23444443 34677889999999999999988763 2 1
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHC---CC
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMKN----------KSV-ITWTTMIAGLALHGLGREALDMFSRMERA---RV 307 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---g~ 307 (507)
+.-..+++.|..+|.+.|++++|...++...+ +.+ ..++.++..+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22345677788899999999998888776543 122 35667788899999999999999886542 12
Q ss_pred CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh----C-CCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhC----
Q 010575 308 KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRY----G-IEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM---- 373 (507)
Q Consensus 308 ~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 373 (507)
.++ ..+++.|...|...|++++|.++|+++.... + ..+. ...++.|...|.+.+++.+|.++|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 2578999999999999999999999988643 1 1222 456788889999999999999998876
Q ss_pred ----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 374 ----PFEANA-AIWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 374 ----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
+..|+. .+|..|...|...|+++.|+++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344544 579999999999999999999999985
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.3e-10 Score=99.39 Aligned_cols=191 Identities=10% Similarity=0.082 Sum_probs=160.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccC
Q 010575 249 NALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF-IAILSACCHVG 325 (507)
Q Consensus 249 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g 325 (507)
+.+..+|.+.|.+.+|.+.|+.-.+ +-+.||..|-..|.+..++..|+.++.+-.+. .|-.+|| ....+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5688899999999999999988765 67789999999999999999999999998875 5555554 46777888899
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 326 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
+.+.|.++++...+. -+.++....++...|.-.++++-|+.+|+++ + ..++..|..+.-+|.-.++++-+...|
T Consensus 305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999873 3456677777888888999999999999987 4 357888999999999999999999999
Q ss_pred HHHhcc--CCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 403 QHLIKL--EPH-NSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 403 ~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
++++.. +|+ -..+|.+++.+....|++.-|.+-|+-....+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 999764 344 466899999999999999999999988764443
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=5.8e-10 Score=110.41 Aligned_cols=226 Identities=9% Similarity=-0.064 Sum_probs=171.3
Q ss_pred CHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHHhcCC-
Q 010575 209 DEIAMLAALSACA-----QLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK---------SGKIGKALQVFENMKN- 273 (507)
Q Consensus 209 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~- 273 (507)
+...|...+.+.. ..+++++|...+++..+.. +.+...+..+..+|.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3444545555431 2245678999999998775 3345566666655542 2458899999998876
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-hHH
Q 010575 274 --KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQY 350 (507)
Q Consensus 274 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~ 350 (507)
.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|+..++++.+. .|+. ..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhH
Confidence 356788888889999999999999999999863 234567888888999999999999999999854 4543 233
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC--CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM--PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
..++..+...|++++|...++++ ...| ++..+..+..++...|+.++|...++++....|.+......++..|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 34455567789999999999887 2235 44557778888899999999999999998888888888888888888888
Q ss_pred CchHHHHHHHHHHh
Q 010575 428 RWNESGKIRKVMRD 441 (507)
Q Consensus 428 ~~~~A~~~~~~~~~ 441 (507)
++|...++.+.+
T Consensus 490 --~~a~~~l~~ll~ 501 (553)
T PRK12370 490 --ERALPTIREFLE 501 (553)
T ss_pred --HHHHHHHHHHHH
Confidence 588888888754
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=4.4e-12 Score=80.39 Aligned_cols=50 Identities=28% Similarity=0.672 Sum_probs=39.2
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHc
Q 010575 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVK 88 (507)
Q Consensus 39 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 88 (507)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888887888888888888777753
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=6.1e-10 Score=100.93 Aligned_cols=90 Identities=14% Similarity=0.051 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 010575 248 NNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCH 323 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~ 323 (507)
|..+...|...|+.++|...|+...+ .+...|+.+...+...|++++|...|++..+. .| +..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44444445555555555555554433 23345555555555555555555555555543 22 23444445555555
Q ss_pred cCcHHHHHHHHHHhHH
Q 010575 324 VGLVELGRRYFNIMKS 339 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~ 339 (507)
.|++++|.+.|+...+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555553
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=4.9e-09 Score=95.03 Aligned_cols=228 Identities=10% Similarity=-0.003 Sum_probs=152.2
Q ss_pred CChhHHHHHHHHHhHCC-CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 010575 189 DQPNEAITLFRRMQVEN-VKPD--EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 265 (507)
Q Consensus 189 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 265 (507)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|+...+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566667776666532 2222 2446666667788888888888888888765 456778888888899999999999
Q ss_pred HHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC
Q 010575 266 QVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG 342 (507)
Q Consensus 266 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 342 (507)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...+++++|...|.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99888765 3 4567888888889999999999999998875 44432222222234456789999999977654 3
Q ss_pred CCCChhHHHHHHHHHhhcCCHH--HHHHHHhhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CC
Q 010575 343 IEPKIEQYGCMIDLLGRAGYLQ--EAEKLLRRM-PF----EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH-NS 413 (507)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 413 (507)
.+|+...+ .+... ..|+.. ++.+.+... .. .| ....|..+...+...|++++|+..|+++++.+|. ..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33333222 23333 344443 333333322 11 11 3457889999999999999999999999999974 44
Q ss_pred chHHHHHHHHH
Q 010575 414 GNYAILSNIYA 424 (507)
Q Consensus 414 ~~~~~l~~~~~ 424 (507)
.....++....
T Consensus 272 e~~~~~~e~~~ 282 (296)
T PRK11189 272 EHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=8.1e-10 Score=90.21 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
+...|..+|...|+...|..-+++.++. .| +..++..+...|.+.|..+.|.+-|++..+. -+-+..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH
Confidence 3455677888888888888888888876 34 4467778888888888888888888888752 23356777888888
Q ss_pred HhhcCCHHHHHHHHhhC---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHH
Q 010575 357 LGRAGYLQEAEKLLRRM---PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 432 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 432 (507)
+|..|++++|...|+++ |.-| -..+|..+..+..+.|+.+.|...|++.++.+|+.+.....++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 88888888888888887 2222 3457888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCC
Q 010575 433 GKIRKVMRDMGV 444 (507)
Q Consensus 433 ~~~~~~~~~~~~ 444 (507)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 888888865544
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=1.7e-07 Score=88.08 Aligned_cols=397 Identities=9% Similarity=0.002 Sum_probs=216.6
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHH
Q 010575 51 LCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDA 130 (507)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 130 (507)
+...|+-++|......-.+.. .-+.+.|..+.-.+....++++|.+.|...++.+.. |..++.-|.-.-++.|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhH
Confidence 344566666666665555422 234455666655555666677777777766665533 555555555555556666666
Q ss_pred HHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHH------HHHHHhCCChhHHHHHH
Q 010575 131 RKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE-----KNVISWTTL------IAGYAQMDQPNEAITLF 198 (507)
Q Consensus 131 ~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l------i~~~~~~~~~~~a~~~~ 198 (507)
...-.++.+..| ....|..+..++...|+...|..+++...+ ++...+... .......|..++|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 555555555544 344566666666666666666666655542 333332221 23344556666666655
Q ss_pred HHHhHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHH-HHHHHHHhcCCHHHHH-HHHHhcCCC-
Q 010575 199 RRMQVENVKPDEIAM-LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNN-ALIDMYAKSGKIGKAL-QVFENMKNK- 274 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~-~~~~~~~~~- 274 (507)
..-... ..|...+ ..-...+.+.+++++|..++..+.... ||..-|. .+..++.+-.+.-++. .+|....+.
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 443322 1122222 233445566677777777777666653 3333333 3333333222222222 444444331
Q ss_pred -ChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh-C---------
Q 010575 275 -SVITWTTMIAGLALHGL-GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY-G--------- 342 (507)
Q Consensus 275 -~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~--------- 342 (507)
-...-..+-.......+ .+..-.++..+.+.|+++-...+.++ |-.....+-..++.-.+.... |
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence 00000011111111122 23334455666667766433333322 222111111111111111100 1
Q ss_pred ---CCCChhHHH--HHHHHHhhcCCHHHHHHHHhhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 343 ---IEPKIEQYG--CMIDLLGRAGYLQEAEKLLRRM-PFEANAA-IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 343 ---~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
-+|....|. .++..+-+.|+++.|..+++.+ ...|+.. .|..-.+.+.+.|++++|...++++.+++-.|..+
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 155655554 4677788999999999999988 5556544 45555677889999999999999999998776666
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCc-----cCCceeEEEEC
Q 010575 416 YAILSNIYAILGRWNESGKIRKVMRDMGVK-----KMPGCSYIEVS 456 (507)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~ 456 (507)
-..-+.-..++++.++|.++....-..|.. ....|.|..+.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 667788888999999999999888766642 12346665444
No 77
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=4.4e-08 Score=84.74 Aligned_cols=297 Identities=9% Similarity=0.006 Sum_probs=170.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHH---HHHHHhcCCHHHHHHHHHhcCCCChhHHHH---HHHHHH
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTM---VAGYAKVGDLNNARALFELMTEKNVISWTT---LIAGYA 186 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l---i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~ 186 (507)
-...+...+...|++.+|+..|....+..| ..|.++ ...|...|+...|+.-|.+..+.-+..+.. -...+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 334455556666666677766666666633 333333 345555666666666555555422222222 223566
Q ss_pred hCCChhHHHHHHHHHhHCCCCCCH--------------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 187 QMDQPNEAITLFRRMQVENVKPDE--------------IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 187 ~~~~~~~a~~~~~~m~~~~~~~~~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
+.|.+++|..-|+..++.....+. ......+..+...|+...|+.....+++.. +.|...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 677777777777776664321110 011223334555677777777777776654 55666666677
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-------HH----
Q 010575 253 DMYAKSGKIGKALQVFENMK---NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIA-------IL---- 318 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-------l~---- 318 (507)
.+|...|++..|+.-++... ..+...+-.+-..+...|+.+.++...++-.+. .||...+.. +.
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH
Confidence 77777777777766555433 345556666666677777777777777766653 555432111 11
Q ss_pred --HHHhccCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHH
Q 010575 319 --SACCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAAS 389 (507)
Q Consensus 319 --~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~ 389 (507)
......++|.++++..+...+. .|. ...+..+..++...|++-+|++...+. ...|+ ..++.-=..+|
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1123445666666666666543 333 223344556666677777777776665 44554 55666666677
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
.....++.|+.-|+.+.+.+|++..+-.
T Consensus 352 l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 7777777777777777777777654433
No 78
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.7e-11 Score=77.66 Aligned_cols=50 Identities=28% Similarity=0.576 Sum_probs=43.5
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc
Q 010575 173 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 222 (507)
Q Consensus 173 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 222 (507)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888899999999888888888888888888764
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=1.6e-08 Score=96.93 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=50.8
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCccc-HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc----
Q 010575 50 ALCQTDNPLNAVILYNKIQASALRPDNYS-FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASC---- 124 (507)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 124 (507)
.+...|++++|++.++.-.. .-+|..+ .......+.+.|+.++|..++..+++.+++ |..-|..+..+..-.
T Consensus 13 il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 34566777777777765433 2244333 344455566777777777777777776543 444444444444221
Q ss_pred -CChHHHHHHHHhcccCCCC
Q 010575 125 -KCIYDARKVFDELSLRVWN 143 (507)
Q Consensus 125 -g~~~~A~~~~~~~~~~~p~ 143 (507)
.+.+....+|+++....|.
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~ 109 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPR 109 (517)
T ss_pred cccHHHHHHHHHHHHHhCcc
Confidence 2455556666666655553
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.1e-08 Score=85.07 Aligned_cols=387 Identities=14% Similarity=0.013 Sum_probs=212.4
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHH-HHHHHH
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVA-ALIQMY 121 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~ 121 (507)
+++++..+.+..++++|++++..-.++. | +....+.|..+|....++..|-..++++-...++ ..-|. .-...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~--~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE--LEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHH
Confidence 4555555666666666666666655532 3 4444555556666666666666666666554322 22221 123445
Q ss_pred HhcCChHHHHHHHHhcccCCCChhhHHHHH--HHHHhcCCHHHHHHHHHhcC-CCChhHHHHHHHHHHhCCChhHHHHHH
Q 010575 122 ASCKCIYDARKVFDELSLRVWNVAVWNTMV--AGYAKVGDLNNARALFELMT-EKNVISWTTLIAGYAQMDQPNEAITLF 198 (507)
Q Consensus 122 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~li--~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 198 (507)
.+.+.+.+|+.+...|... |+...-..-+ ......+++..+..++++.. +.+..+.+.......+.|+++.|.+-|
T Consensus 89 Y~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 5566666777776666553 1111111111 12223566666667776666 355555556666666777777777777
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-------------c---------------hhHHHH
Q 010575 199 RRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNT-------------I---------------VPLNNA 250 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~ 250 (507)
+...+-+---....|+..+ +..+.++.+.|.++..+++++|++. | +..+|.
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 7766543222334554443 4445667777777777776655421 1 112233
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010575 251 LIDMYAKSGKIGKALQVFENMKNK-----SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 325 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 325 (507)
-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+..... --..||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 333456789999999999988753 566665543222 23445555555565655533 23478888999999988
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh-hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCC----HHHHH
Q 010575 326 LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG-RAGYLQEAEKLLRRMPFEANAAIWGSLLAAS-NIYGD----VELGE 399 (507)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g~----~~~A~ 399 (507)
-++.|-.++-+-....-.-.+...|+ |++++. ..-..++|.+-++.+........-...+..- .+..+ ...|+
T Consensus 325 yf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 325 YFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888887754332100011333443 333333 3456777777666551000000111111111 11111 22333
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 400 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+-+++.++.- ..+....++.|++..++.-+.++|+.-.+.
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 4444444432 124667788999999999999999876543
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.25 E-value=8e-08 Score=90.15 Aligned_cols=390 Identities=13% Similarity=0.128 Sum_probs=256.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
|..++.. ...+++...++..+.+.. +.+--..|.....-.+...|+.++|....+.-++.++. +...|..+.-.+..
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 3344443 345778888888888777 33334455555555567889999999988888776544 67788888888888
Q ss_pred cCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHH
Q 010575 124 CKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFR 199 (507)
Q Consensus 124 ~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~ 199 (507)
..++++|++.|.......| |...|..+--.-.+.++++.....-....+- .-..|..++.++.-.|++..|..+++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988877 6777888877778888888877777666642 34678888899999999999999999
Q ss_pred HHhHCC-CCCCHHHHHHHHH------HHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 200 RMQVEN-VKPDEIAMLAALS------ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK 272 (507)
Q Consensus 200 ~m~~~~-~~~~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 272 (507)
+..+.. ..|+...|..... .....|.++.|.+.+..-...- ......-..-...+.+.+++++|..+|..+.
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 988764 3466655543322 3456677788877766544331 1122233345667889999999999999988
Q ss_pred CCCh--hHH-HHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhhCCCCCh
Q 010575 273 NKSV--ITW-TTMIAGLALHGLGREAL-DMFSRMERARVKPNEITFIAI-LSACCHVGLVELGRRYFNIMKSRYGIEPKI 347 (507)
Q Consensus 273 ~~~~--~~~-~~l~~~~~~~~~~~~A~-~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 347 (507)
.+++ ..| -.+..++.+-.+.-++. .+|....+. .|....-..+ +.......-.+..-.++....++ |+++-.
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~vf 323 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GVPSVF 323 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CCCchh
Confidence 7433 344 34445554333444444 666666553 2222111111 11111122233334444555554 666533
Q ss_pred hHHHHHHHHHhhcCCHH---H-HHHHHhhC-C------------CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 348 EQYGCMIDLLGRAGYLQ---E-AEKLLRRM-P------------FEANAAIWG--SLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~---~-A~~~~~~~-~------------~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
.. +...|-.-...+ + +..+...+ + ..|....|. .++..+-+.|+++.|...++.++..
T Consensus 324 ~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 324 KD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred hh---hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 32 333332211111 1 11222222 1 245555554 4666788999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 409 EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 409 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.|.-+..|..-++++...|..++|..++++.++-+
T Consensus 401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999987443
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=6.4e-08 Score=84.12 Aligned_cols=410 Identities=12% Similarity=0.019 Sum_probs=218.5
Q ss_pred HHHHHccCChhHHHHHhccCCCCC---c-ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSKPD---V-YLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI 92 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 92 (507)
+.-+....++..|+.+++.-...+ . .+=-.+...+.+-|++++|..+|.-+.... .|+...+..|.-+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 555667788999999887644311 1 122234456678899999999998887744 45666666666666778888
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 93 ELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE 172 (507)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 172 (507)
.+|..+-... ..++-.-..|+..-.+.|+-++-..+-+.+... ..--.++.+.....-.+++|++++.+...
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~---~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT---LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887765433 112223333445555566666655555555432 22333444444445567777777777665
Q ss_pred CC--hhHHHH-HHHHHHhCCChhHHHHHHHHHhHCCCCCCH-HHHHHHHHHHhcc--CC---------------------
Q 010575 173 KN--VISWTT-LIAGYAQMDQPNEAITLFRRMQVENVKPDE-IAMLAALSACAQL--GA--------------------- 225 (507)
Q Consensus 173 ~~--~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~--~~--------------------- 225 (507)
.+ -...|. +.-+|.+..-++-+.++++--++. -||+ ...+..+....+. |+
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 33 233332 334556666666666666655543 2222 2222221111111 11
Q ss_pred ------------HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---
Q 010575 226 ------------VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHG--- 290 (507)
Q Consensus 226 ------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--- 290 (507)
-+.|.+++--+.+. -|. .--.|+-.|.+.++.++|..+.+.+....+.-|-.-.-.++..|
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence 11222222111111 111 11234455778888888888887776554443333222233333
Q ss_pred ----ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 010575 291 ----LGREALDMFSRMERARVKPNEI-TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 291 ----~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
...-|...|+-.-+++..-|.. ---++..++.-..+++..+..+..+..- -...|...+ .+.++++..|++.+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHH
Confidence 3334444444433333332221 1123334444445667777777666542 222333333 46777777788888
Q ss_pred HHHHHhhCC--CCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 366 AEKLLRRMP--FEANAAIWGSLL-AASNIYGDVELGECALQHLIKLEPH-NSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 366 A~~~~~~~~--~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
|+++|-++. .-.|..+|.+++ ++|.+.+.++.|..++-++ ..|. ....+..++..|.+++.+=-|.+.|.++..
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 888777762 113555555544 4556777777765554332 1222 223444556677777777777777777764
Q ss_pred CCCc
Q 010575 442 MGVK 445 (507)
Q Consensus 442 ~~~~ 445 (507)
.++.
T Consensus 490 lDP~ 493 (557)
T KOG3785|consen 490 LDPT 493 (557)
T ss_pred cCCC
Confidence 4443
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.6e-09 Score=100.01 Aligned_cols=249 Identities=14% Similarity=0.057 Sum_probs=189.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 010575 220 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREAL 296 (507)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 296 (507)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+ .|..+.-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467788999999999888876 66788898898889999999999999988776 35677888888899999999999
Q ss_pred HHHHHHHHCCCCC--------CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 010575 297 DMFSRMERARVKP--------NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEK 368 (507)
Q Consensus 297 ~~~~~m~~~g~~p--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 368 (507)
..|+.-+....+- +...-.. ..+.....+....++|-.+....+..+|+.+...|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9998876542110 0000000 12223334555666666666555666888899999999999999999999
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010575 369 LLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 446 (507)
Q Consensus 369 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (507)
.|+.+ ..+| |..+||.|...+....+.++|+..|.+++++.|...++...|+..|...|.++||.+.|-.........
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 99988 6677 556899999999999999999999999999999999999999999999999999999987765332211
Q ss_pred CCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 010575 447 MPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 487 (507)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 487 (507)
..+ .+..++ ++.++..|......|.
T Consensus 532 ~~~---------------~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 532 RNH---------------NKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred ccc---------------ccCCcc-hHHHHHHHHHHHHHcC
Confidence 000 001222 5678888876665554
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=1.5e-08 Score=82.88 Aligned_cols=194 Identities=15% Similarity=0.016 Sum_probs=94.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh
Q 010575 216 ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLG 292 (507)
Q Consensus 216 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 292 (507)
+.-.|.+.|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|+...+ .+..+.|.....+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3334444444444444444444443 33344444444555555555555555554432 2334445555555555555
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHh
Q 010575 293 REALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 371 (507)
Q Consensus 293 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 371 (507)
++|...|++......-|. ..+|..+.-+..+.|+.+.|...|++..+. .+-.+.....+.......|++..|..+++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555554322121 234555555555555555555555555532 12223344445555555555555555555
Q ss_pred hC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 372 RM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 372 ~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
+. ...++..+....|..-...||.+.+.+.=.++.+..|.+
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 54 222444444445555555555555555555555555553
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=1.1e-07 Score=82.40 Aligned_cols=296 Identities=11% Similarity=0.089 Sum_probs=220.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH---HHHHhCCChhHHHHHHHHHhHCCCCCCHHHH-HHHHH
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLI---AGYAQMDQPNEAITLFRRMQVENVKPDEIAM-LAALS 218 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~ 218 (507)
++.-..-+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-+...++ ++||...- ..-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 3344455677788899999999999999998888777664 578999999999999999887 56775432 12233
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCc--hh------------HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHH
Q 010575 219 ACAQLGAVELGEWIHNYIEQYGLNTI--VP------------LNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTT 281 (507)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 281 (507)
.+.+.|.++.|..-|+.+++...... .. .....+..+...|+...|+.....+.+ -|...+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 56889999999999999988753211 11 112234456677899999999888876 36778888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhH----HHHH---H
Q 010575 282 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ----YGCM---I 354 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---~ 354 (507)
-..+|...|++..|+.-++...+.. .-+..++..+-..+...|+.+.++...++.. .+.||... |..| .
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHH
Confidence 8899999999999999888877653 3345566667777888899999988888887 55777532 2111 1
Q ss_pred ------HHHhhcCCHHHHHHHHhhC-CCCCCH--HHH---HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 355 ------DLLGRAGYLQEAEKLLRRM-PFEANA--AIW---GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 355 ------~~~~~~g~~~~A~~~~~~~-~~~~~~--~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
......+++.++++-.+.. ...|.. ..+ ..+-.++...|++.+|++...++++++|++..++..-+.+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 1234567777777777665 445542 223 3334455778999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhCCC
Q 010575 423 YAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
|.-...+++|+.=|++..+-+.
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcCc
Confidence 9999999999999998865443
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.7e-07 Score=86.27 Aligned_cols=394 Identities=14% Similarity=0.034 Sum_probs=241.4
Q ss_pred HHHHHccCChhHHHHHhccCC---CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHccCCc
Q 010575 17 IDSCSSLGFSDYAYSIFTHKS---KPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDN-YSFPFVLKAVVKLSTI 92 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~ 92 (507)
-++.++.|+++.|...|.+.. ++|...|..-..+|+..|++++|++=-.+-++ +.|+. ..|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 345678899999999998743 46888899999999999999999887666666 56774 5699999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChH---HHHHHHHhcccCCC------ChhhHHHHHHHHHh-------
Q 010575 93 ELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIY---DARKVFDELSLRVW------NVAVWNTMVAGYAK------- 156 (507)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~p------~~~~~~~li~~~~~------- 156 (507)
++|...|.+-++..+. +...++-|.+++....... .--.++..+.. .| ....|..++..+-+
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~-~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN-LPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc-ChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999998887533 6677777887772110000 00001111111 11 11122222222211
Q ss_pred ---cCCHHHHHHHHHhcC----------------CC------------C----------hhHHHHHHHHHHhCCChhHHH
Q 010575 157 ---VGDLNNARALFELMT----------------EK------------N----------VISWTTLIAGYAQMDQPNEAI 195 (507)
Q Consensus 157 ---~~~~~~A~~~~~~~~----------------~~------------~----------~~~~~~li~~~~~~~~~~~a~ 195 (507)
...+..|...+.... .| | ..-...+.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 111122222221110 01 0 012445677777888888888
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHH-------HHHHHHHHhcCCHHHHHHHH
Q 010575 196 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN-------NALIDMYAKSGKIGKALQVF 268 (507)
Q Consensus 196 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~A~~~~ 268 (507)
+.+....... -+..-++....++...|.+..+...-...++.|... ..-+ ..+..+|.+.++++.++..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 8888877754 344444556667788888777776666666555221 1111 22333556667777777777
Q ss_pred HhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh
Q 010575 269 ENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI 347 (507)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 347 (507)
.+...+... -....+....+++........-. .|.. .-...-...+.+.|++..|...|.+++++ .+-|.
T Consensus 322 ~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da 392 (539)
T KOG0548|consen 322 QKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDA 392 (539)
T ss_pred HHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchh
Confidence 764432110 11122223344444444443332 2322 11222355677788888888888888874 35567
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 348 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
..|....-+|.+.|.+..|++-.+.. ...|+ ...|.-=..++....++++|.+.|+++++.+|++..+...+.++...
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 88888888888888888888776655 33443 34555556667777888888888888888888877777776666654
Q ss_pred c
Q 010575 426 L 426 (507)
Q Consensus 426 ~ 426 (507)
.
T Consensus 473 ~ 473 (539)
T KOG0548|consen 473 Q 473 (539)
T ss_pred h
Confidence 3
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.6e-08 Score=90.54 Aligned_cols=376 Identities=11% Similarity=0.044 Sum_probs=226.6
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChH
Q 010575 49 KALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIY 128 (507)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 128 (507)
.+.+..|+++.|+..|-+.+.-. ++|..-|+.=..+++..|++++|++=-.+.++..+.. ...|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-AKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch-hhHHHHhHHHHHhcccHH
Confidence 45678899999999999988743 3466778888889999999999987766666654332 356888888899999999
Q ss_pred HHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH------hcCC-C------ChhHHHHHHHHHHhC------
Q 010575 129 DARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFE------LMTE-K------NVISWTTLIAGYAQM------ 188 (507)
Q Consensus 129 ~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~------~~~~-~------~~~~~~~li~~~~~~------ 188 (507)
+|+..|.+-.+..| +...++.+..++.. +.. +-+.|. .+.. | ...+|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLE--DYA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhH--HHH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999999888877 56667777776611 100 111111 0000 0 011233333222111
Q ss_pred -CChhHHHHHHHHHh--------HCC-------CCCC----------------------HHHHHHHHHHHhccCCHHHHH
Q 010575 189 -DQPNEAITLFRRMQ--------VEN-------VKPD----------------------EIAMLAALSACAQLGAVELGE 230 (507)
Q Consensus 189 -~~~~~a~~~~~~m~--------~~~-------~~~~----------------------~~~~~~ll~~~~~~~~~~~a~ 230 (507)
.+.....+..-.+. ..+ ..|. ..-...+.++..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00111111111110 000 0110 012234444455555666666
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---h-------HHHHHHHHHHHcCChHHHHHHHH
Q 010575 231 WIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---I-------TWTTMIAGLALHGLGREALDMFS 300 (507)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~A~~~~~ 300 (507)
+-+....... .+..-++....+|...|.+..+...-....+.+- . .+..+..+|.+.++++.|+..|.
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 6666655554 4444555556666666666555554444333211 1 12223334555566666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-
Q 010575 301 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA- 377 (507)
Q Consensus 301 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~- 377 (507)
+.......|+.. .+....+++....+... -+.|.. .-...-...+.+.|++..|+..|.++ ...|
T Consensus 323 kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 655433333221 12222333333332222 122322 11122256677899999999999988 4445
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
|...|..-..+|.+.|.+..|+.-.+..++++|+....|..-+.++.-..+|++|.+.|.+.++.+
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 667888899999999999999999999999999999999999999999999999999998887543
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.15 E-value=3.4e-07 Score=87.80 Aligned_cols=383 Identities=13% Similarity=0.026 Sum_probs=206.8
Q ss_pred CCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCC--CChhh-H
Q 010575 71 ALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRV--WNVAV-W 147 (507)
Q Consensus 71 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~-~ 147 (507)
.+..|+..|..+.-++...|+++.+-+.|++....-+. ....|+.+...|...|.-..|..+++.-.... |+..+ +
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34456666666666666667777766666666554332 44556666666666676666666666655543 32222 2
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhC-----------CChhHHHHHHHHHhHCC-C
Q 010575 148 NTMVAGYAK-VGDLNNARALFELMTE--------KNVISWTTLIAGYAQM-----------DQPNEAITLFRRMQVEN-V 206 (507)
Q Consensus 148 ~~li~~~~~-~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~-~ 206 (507)
-..-..|.+ .+.+++++++-.+... ..+..|..+.-+|... ....++++.+++..+.+ -
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 222222222 3444444444433332 1233444444433221 11345556666665543 2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHH
Q 010575 207 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMI 283 (507)
Q Consensus 207 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~ 283 (507)
.|+...|..+ -|+..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+...+. |......-+
T Consensus 477 dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 2333333222 34555667777777777766655566666666666666677777777666554431 111000001
Q ss_pred HHHHHcCChHHHHHHHHHHHHC---------------------CC-----CC--CHHHHHHHHHHHhccCcHHHHHHHHH
Q 010575 284 AGLALHGLGREALDMFSRMERA---------------------RV-----KP--NEITFIAILSACCHVGLVELGRRYFN 335 (507)
Q Consensus 284 ~~~~~~~~~~~A~~~~~~m~~~---------------------g~-----~p--~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (507)
..-..-++.++++.....+... |. .| ...++..+..-....+........
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 1111123333333332222110 00 00 011222111111100000000000
Q ss_pred HhHHhhCCCCC--------hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010575 336 IMKSRYGIEPK--------IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHL 405 (507)
Q Consensus 336 ~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (507)
+. .....|+ ...|......+.+.++.++|...+.++ +..| ....|......+...|..++|.+.|..+
T Consensus 633 -Lp-~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 -LP-SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred -cC-cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 00 0011222 124556677788899999998777776 4444 5556777777888999999999999999
Q ss_pred hccCCCCCchHHHHHHHHHHcCCchHHHH--HHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHH
Q 010575 406 IKLEPHNSGNYAILSNIYAILGRWNESGK--IRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKIN 483 (507)
Q Consensus 406 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 483 (507)
+.++|+++.+...++.++.+.|+-.-|.. ++..+.+. +|.+.++|--+.++.
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--------------------------dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--------------------------DPLNHEAWYYLGEVF 764 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--------------------------CCCCHHHHHHHHHHH
Confidence 99999999999999999999998777777 78777643 455667777776665
Q ss_pred HHH
Q 010575 484 GQM 486 (507)
Q Consensus 484 ~~~ 486 (507)
+..
T Consensus 765 k~~ 767 (799)
T KOG4162|consen 765 KKL 767 (799)
T ss_pred HHc
Confidence 544
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.8e-07 Score=81.46 Aligned_cols=381 Identities=10% Similarity=0.057 Sum_probs=213.9
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 48 IKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
+.-+..+.++..|+.+++--...+-+-...+-..+..++.+.|++++|...+..+.... .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677788999999998876654322222333344556679999999999999887754 56677777787777788999
Q ss_pred HHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCC
Q 010575 128 YDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK 207 (507)
Q Consensus 128 ~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 207 (507)
.+|..+-..... +...-..|.....+.++-++-..+-+.+.+.. .---+|.+.....-.+.+|+++|+..+..+
T Consensus 108 ~eA~~~~~ka~k---~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 108 IEAKSIAEKAPK---TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHHHHhhCCC---ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 999988877654 44455566677777788777766666655422 222344555555567899999999988753
Q ss_pred CCHHHHHHHH-HHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CCHHHHH--HHHHhcCC---------
Q 010575 208 PDEIAMLAAL-SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS--GKIGKAL--QVFENMKN--------- 273 (507)
Q Consensus 208 ~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~--~~~~~~~~--------- 273 (507)
|+-...+.-+ -+|.+..-++.+.+++.-..+.- +.++...|....-..+. |+..+.+ .+-+...+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 4444444433 35667777788888887666542 33333444333333322 2221111 11111110
Q ss_pred -CC---------------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccCc
Q 010575 274 -KS---------------------VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA-----CCHVGL 326 (507)
Q Consensus 274 -~~---------------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-----~~~~g~ 326 (507)
.| +.+-..|+--|.++++..+|..+.+++.. ..|-......+..+ ......
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 11 11222344445666666666666555432 12222222222211 111122
Q ss_pred HHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010575 327 VELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRMP--FEANAAIWGSLLAASNIYGDVELGECALQ 403 (507)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (507)
..-|.+.|+..-+. +..-|. .--.++...+.-..++++.+.+++.+. ...|...-..+..+....|++.+|+++|-
T Consensus 339 lKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHh
Confidence 34444555444322 222221 122234444444556666666666552 22233333446667777777777777776
Q ss_pred HHhccC-CCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 404 HLIKLE-PHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 404 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
++...+ .+.......|+++|.+.|+.+-|.+++-++
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 665444 222333345667777777777776666554
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.13 E-value=7e-08 Score=91.66 Aligned_cols=220 Identities=16% Similarity=0.107 Sum_probs=104.0
Q ss_pred HHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010575 185 YAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 264 (507)
Q Consensus 185 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 264 (507)
.....+|.+|+.+++.+++... -..-|..+.+.|+..|+++.|.++|.+.- .++--|..|.+.|+|+.|
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 3444555555555555554332 22334455555666666666655554321 223445556666666666
Q ss_pred HHHHHhcCCCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC
Q 010575 265 LQVFENMKNKS--VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG 342 (507)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 342 (507)
.++-.+...|. +..|-+-..-+-.+|++.+|..++-... .|+. .|..|-+.|..+..+++.++-..
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~--- 878 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG--- 878 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh---
Confidence 66655554432 2344444444555555555555543322 2221 33445555555555555443321
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 343 IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
..-..+...+..-|...|++..|...|-+.+ -|.+-++.|...+-+++|-++.+. .+-.+ .....+..
T Consensus 879 -d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriakt---egg~n--~~k~v~fl 946 (1636)
T KOG3616|consen 879 -DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAKT---EGGAN--AEKHVAFL 946 (1636)
T ss_pred -hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHhc---ccccc--HHHHHHHH
Confidence 1112344445555566666666666655553 244444455555555444333221 11112 22333333
Q ss_pred HHHcCCchHHHHHHHHH
Q 010575 423 YAILGRWNESGKIRKVM 439 (507)
Q Consensus 423 ~~~~g~~~~A~~~~~~~ 439 (507)
+.+.=--+.|.+++.+.
T Consensus 947 waksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 947 WAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHhhCcHHHHHHHHhh
Confidence 34433335666666553
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.13 E-value=3.9e-09 Score=94.21 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=73.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH----hhcC
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL----GRAG 361 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g 361 (507)
+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ +..|. +...+..++ ...+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCch
Confidence 33445555555544321 2333444445555555555555555555542 22222 112222222 2223
Q ss_pred CHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCc-hHHHHHHHH
Q 010575 362 YLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRW-NESGKIRKV 438 (507)
Q Consensus 362 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 438 (507)
.+.+|..+|+++ ...+++.+.+.+..++...|++++|..+++++++.+|+++.++.+++.+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 456666666655 23345556666666666666666666666666666666666666666666666665 445556666
Q ss_pred HH
Q 010575 439 MR 440 (507)
Q Consensus 439 ~~ 440 (507)
+.
T Consensus 262 L~ 263 (290)
T PF04733_consen 262 LK 263 (290)
T ss_dssp CH
T ss_pred HH
Confidence 54
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.4e-06 Score=81.26 Aligned_cols=384 Identities=12% Similarity=0.018 Sum_probs=207.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 010575 47 TIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC 126 (507)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (507)
=+..+..+|++++|.....++...+ +-|...+..-+-++.+.+.++.|+.+.+.-.. ...+...+-.=.-+..+.++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 3456678899999999999999854 44556677777888899999999855432211 11111211122334457899
Q ss_pred hHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH-------------------------
Q 010575 127 IYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTL------------------------- 181 (507)
Q Consensus 127 ~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l------------------------- 181 (507)
.|+|+..++..... +..+...-...+.+.|++++|.++|+.+.+.+...+...
T Consensus 95 ~Dealk~~~~~~~~--~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 95 LDEALKTLKGLDRL--DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPE 172 (652)
T ss_pred HHHHHHHHhccccc--chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCc
Confidence 99999999955544 445666667888999999999999999965333222222
Q ss_pred ---------HHHHHhCCChhHHHHHHHHHhHCC-------CCCCHH-------HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010575 182 ---------IAGYAQMDQPNEAITLFRRMQVEN-------VKPDEI-------AMLAALSACAQLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 182 ---------i~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~ 238 (507)
...+...|++.+|+++++...+.+ -..+.. .-..+.-.+-..|+.++|..++..+++
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 223344455555555554442111 000000 011122223344555555555544444
Q ss_pred cCCCCchhH----HHHHHHHHHhcCCHH--HHHHHHHhcCCCCh--------------hHH-HHHHHHHHHcCChHHHHH
Q 010575 239 YGLNTIVPL----NNALIDMYAKSGKIG--KALQVFENMKNKSV--------------ITW-TTMIAGLALHGLGREALD 297 (507)
Q Consensus 239 ~~~~~~~~~----~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~--------------~~~-~~l~~~~~~~~~~~~A~~ 297 (507)
.. ++|... .|.|+. .....++- .++..++....... +.. +.++..| .+..+.+.+
T Consensus 253 ~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~ 328 (652)
T KOG2376|consen 253 RN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRE 328 (652)
T ss_pred hc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHH
Confidence 43 222111 111111 11111100 11111111111000 001 1111111 122233332
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHh--ccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHh---
Q 010575 298 MFSRMERARVKPNEITFIAILSACC--HVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLR--- 371 (507)
Q Consensus 298 ~~~~m~~~g~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~--- 371 (507)
+..... +..|. ..+..++..+. +...+.++..++....+. .+-. ..+....+.....+|+++.|.+++.
T Consensus 329 ~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 329 LSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 222211 22333 33444444332 222467777777777653 2222 4555667788889999999999998
Q ss_pred -----hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCC---CCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 372 -----RM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIK----LEPH---NSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 372 -----~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
.. .....+.+...+...+.+.++.+.|..++.++++ ..+. ....+..++..-.+.|+-++|...+++
T Consensus 404 ~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 404 ESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 44 2344556666777778888888888888888854 1222 223344555555678999999999999
Q ss_pred HHhCCC
Q 010575 439 MRDMGV 444 (507)
Q Consensus 439 ~~~~~~ 444 (507)
+.+.+.
T Consensus 484 l~k~n~ 489 (652)
T KOG2376|consen 484 LVKFNP 489 (652)
T ss_pred HHHhCC
Confidence 986433
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=9.9e-07 Score=84.12 Aligned_cols=282 Identities=13% Similarity=0.113 Sum_probs=185.7
Q ss_pred HHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhCCChhHHHHH
Q 010575 120 MYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI--SWTTLIAGYAQMDQPNEAITL 197 (507)
Q Consensus 120 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~ 197 (507)
-+...|+++.|...|-+... ....+.+......|.+|+.+++.+....+. -|..+...|...|+++.|.++
T Consensus 715 hl~~~~q~daainhfiea~~-------~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~l 787 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC-------LIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEEL 787 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh-------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHH
Confidence 34445666666665544322 234456667788999999999988865443 477788899999999999999
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 010575 198 FRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI 277 (507)
Q Consensus 198 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 277 (507)
|.+.- .+.-.|..|.+.|+++.|.++-.+.. |.......|-+-..-+-+.|++.+|+++|-.+..|+.
T Consensus 788 f~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~- 855 (1636)
T KOG3616|consen 788 FTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK- 855 (1636)
T ss_pred HHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-
Confidence 86542 24456778999999999988876554 4455566777777778889999999999999888875
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
.|..|-+.|..+..+++.++-... .-..|...+..-+...|++..|...|-+... |.+-+++|
T Consensus 856 ----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmy 918 (1636)
T KOG3616|consen 856 ----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMY 918 (1636)
T ss_pred ----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHh
Confidence 467888999999888887753321 1224566677778888999988887766542 34456667
Q ss_pred hhcCCHHHHHHHHhhCCCCCCHH-----HHH------HHHHHHHHcCCHHHH-------------HHHHHHHhccCCCCC
Q 010575 358 GRAGYLQEAEKLLRRMPFEANAA-----IWG------SLLAASNIYGDVELG-------------ECALQHLIKLEPHNS 413 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~~~~-----~~~------~l~~~~~~~g~~~~A-------------~~~~~~~~~~~p~~~ 413 (507)
...+-+++|.++-+.-+. .|.. .|. ..+..+-++|-.+.| ..+-+-..+ -.-+
T Consensus 919 k~s~lw~dayriaktegg-~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~ 995 (1636)
T KOG3616|consen 919 KASELWEDAYRIAKTEGG-ANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMG 995 (1636)
T ss_pred hhhhhHHHHHHHHhcccc-ccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCc
Confidence 677777777776655421 1111 110 111222333333333 333322222 2224
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.....++..+...|++++|.+.+-+..
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHh
Confidence 567777778888889888877665554
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=2.9e-08 Score=88.66 Aligned_cols=154 Identities=15% Similarity=0.120 Sum_probs=108.4
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHH
Q 010575 253 DMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH----VGLVE 328 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~ 328 (507)
..+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence 4455667777777777654 45566667778888888888888888888764 334 344445554432 34688
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 010575 329 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV-ELGECALQHL 405 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 405 (507)
.|..+|+++.+ ...+++.+.+.+..+....|++++|.+++.+. ...| ++.+...++......|+. +.+.+.+.++
T Consensus 185 ~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 89999999876 44677888888888888999999999988876 3334 556777788777888877 7788888998
Q ss_pred hccCCCCC
Q 010575 406 IKLEPHNS 413 (507)
Q Consensus 406 ~~~~p~~~ 413 (507)
....|+++
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 88888864
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=1.2e-06 Score=82.71 Aligned_cols=196 Identities=12% Similarity=-0.006 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHH
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARV-KPNE--ITFIAILSA 320 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~--~~~~~l~~~ 320 (507)
....+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 333445566667777777777766554 2344566666677777777777777776665421 1222 234456666
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHH-H--HHHHHHhhcCCHHHHHHH---HhhC----CCCCCHHHHHHHHHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQY-G--CMIDLLGRAGYLQEAEKL---LRRM----PFEANAAIWGSLLAASN 390 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~----~~~~~~~~~~~l~~~~~ 390 (507)
+...|++++|..+++++.......+..... + .++..+...|....+.++ .... +.............++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 777777777777777764321111111111 1 222222333322222222 1111 11111122224555667
Q ss_pred HcCCHHHHHHHHHHHhccC-C--------CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 391 IYGDVELGECALQHLIKLE-P--------HNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
..|+.+.|...++.+.... . .........+.++...|++++|.+.+......
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888874421 1 12345566777888999999999999888643
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=6.1e-06 Score=81.63 Aligned_cols=341 Identities=15% Similarity=0.113 Sum_probs=185.5
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 010575 40 DVYLYNTTIKALCQTDNPLNAVILYNKIQASA--LRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117 (507)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 117 (507)
|+..-...+.++...+-+.+.+++++++.-.+ +.-+...-+.|+-...+ -+...+.+..+++-..+ .| .+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hH
Confidence 44455566677777777777777777765321 11111222333333222 24444555554443322 11 23
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHH
Q 010575 118 IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITL 197 (507)
Q Consensus 118 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 197 (507)
.......+-+++|..+|+...- +....+.|+. ..++++.|.+.-++..+| ..|..+..+-.+.|...+|++-
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~---n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM---NVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc---cHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHH
Confidence 3445556667777777776543 3333444443 245677777776666544 5688888888888888888877
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 010575 198 FRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVI 277 (507)
Q Consensus 198 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 277 (507)
|-+. .|+..|..+++.+.+.|.+++-..++....+..-.|.+. +.|+-+|++.+++.+.+.++. -||..
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A 1195 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVA 1195 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCch
Confidence 6443 356678888888888899988888888887776666655 468888888888877666542 34444
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
....+..-|...|.++.|.-+|.. ..-|..|...+...|++..|...-+++ .+..+|..+..+|
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFAC 1259 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHH
Confidence 444555555555555555544432 223444444444555555444332222 1344444444444
Q ss_pred hhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 358 GRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
...+.+.-|.-. .+.+-....-..-++.-|...|-+++-+.+++..+.+...+...+..|+-.|.+
T Consensus 1260 vd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1260 VDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 443333222100 000111222334444445555555555555555555544444444444444443
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=2e-06 Score=81.10 Aligned_cols=294 Identities=11% Similarity=-0.006 Sum_probs=128.4
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHcCC-CCcH-HHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHH---HHH
Q 010575 79 FPFVLKAVVKLSTIELGREIHCQTVGTGL-DSDV-HVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNT---MVA 152 (507)
Q Consensus 79 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~---li~ 152 (507)
|..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.+++.....| +...+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~ 88 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFG 88 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHH
Confidence 44445555566666666555555544332 1121 1122223345566777777777777666655 2222221 111
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010575 153 GYAKVGDLNNARALFELMTEKN---VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 229 (507)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 229 (507)
.....+..+.+.+.+......+ ......+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~-------------------------- 142 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE-------------------------- 142 (355)
T ss_pred hcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------
Confidence 1111233333333333211111 11222333344445555555555555444
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch--hHHHHHHHHHHHcCChHHHHHHHHHH
Q 010575 230 EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----SV--ITWTTMIAGLALHGLGREALDMFSRM 302 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~A~~~~~~m 302 (507)
.. +.+...+..+..+|...|++++|...++...+. +. ..|..+...+...|++++|..++++.
T Consensus 143 ---------~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 143 ---------LN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred ---------hC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33 222334444444555555555555555443321 11 12334555556666666666666665
Q ss_pred HHCCC-CCCHHHH-H--HHHHHHhccCcHHHHHHH---HHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC-
Q 010575 303 ERARV-KPNEITF-I--AILSACCHVGLVELGRRY---FNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP- 374 (507)
Q Consensus 303 ~~~g~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 374 (507)
..... .+..... + .++.-+...|....+.+. ......................++...|+.++|..+++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 43211 1111111 1 122222223322222221 11111100000111111244556667777777777776651
Q ss_pred -CCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 375 -FEA---------NAAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 375 -~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
... ..........++...|+.++|.+.+..++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001 1112222333567888999998888888653
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.99 E-value=6.5e-07 Score=88.18 Aligned_cols=418 Identities=13% Similarity=0.026 Sum_probs=251.2
Q ss_pred HHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-C--cccHHHHHHH
Q 010575 12 LLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRP-D--NYSFPFVLKA 85 (507)
Q Consensus 12 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~--~~~~~~l~~~ 85 (507)
.|..|...|+...+...|.+.|++.-+ .+...+......|++..+++.|..+.-..-+. .| - ...|....-.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhcccc
Confidence 567777788777778888888887554 56677888889999999999998883332221 11 1 1122233334
Q ss_pred HHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCh-hhHHHHHHHHHhcCCHHHHH
Q 010575 86 VVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNV-AVWNTMVAGYAKVGDLNNAR 164 (507)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~ 164 (507)
+.+.++...+..-|+...+..+. |...|..+..+|.++|++..|.++|.++....|+. ..---..-..+..|.+.+|.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 56777888888888888887644 77889999999999999999999998888776632 22222234455678888888
Q ss_pred HHHHhcCCC----------ChhHHHHHHHHHHhCCChhHHHHHHHH-------HhHCCCCCCHHHHHHHHHH--------
Q 010575 165 ALFELMTEK----------NVISWTTLIAGYAQMDQPNEAITLFRR-------MQVENVKPDEIAMLAALSA-------- 219 (507)
Q Consensus 165 ~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~-------m~~~~~~~~~~~~~~ll~~-------- 219 (507)
..+..+... -..++-.+...+...|-..+|..+++. ........+...+..+-++
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 888777631 112222222222323322233222222 2111111111111111111
Q ss_pred ---------------HhccCCH---H---HHHHHHHHHHHcCCCCchhHHHHHHHHHHh----c----CCHHHHHHHHHh
Q 010575 220 ---------------CAQLGAV---E---LGEWIHNYIEQYGLNTIVPLNNALIDMYAK----S----GKIGKALQVFEN 270 (507)
Q Consensus 220 ---------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----~~~~~A~~~~~~ 270 (507)
.-..+.. | .+.+.+-.-. ....+...|..|+.-|.+ . .+...|...+..
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 1111111 1 0011110000 111123333334333332 1 123356666665
Q ss_pred cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-C
Q 010575 271 MKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-K 346 (507)
Q Consensus 271 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~ 346 (507)
..+ .+..+|+.|.-. ...|++.-|...|-+-.... +....+|..+.-.+.+..+++.|...|..... +.| +
T Consensus 809 aV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---LdP~n 883 (1238)
T KOG1127|consen 809 AVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LDPLN 883 (1238)
T ss_pred HHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh---cCchh
Confidence 443 566778777655 56677777777777665542 33556777787788888999999999998874 344 4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHH----------HHHHhccC
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEANAAIWGSLLAASNIYGDVELGECA----------LQHLIKLE 409 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~----------~~~~~~~~ 409 (507)
...|..........|+.-++..+|..- +..|....|..........|+.++-+.. +++.+.-.
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 566655555556778888888888752 2345555555555555666666654444 44446678
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 410 PHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
|++..+|...+....+.+.+++|.+...+.
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877664
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=2.8e-06 Score=90.78 Aligned_cols=324 Identities=14% Similarity=0.048 Sum_probs=210.2
Q ss_pred HHHhcCChHHHHHHHHhcccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHhcCC----C----C--h--hHHHHHHHHH
Q 010575 120 MYASCKCIYDARKVFDELSLRV--WNVAVWNTMVAGYAKVGDLNNARALFELMTE----K----N--V--ISWTTLIAGY 185 (507)
Q Consensus 120 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~----~--~--~~~~~li~~~ 185 (507)
.....|+++.+...++.+.... .+..........+...|++++|...+..... . + . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 4455678888777777764321 1222233444555678999999888876532 1 1 1 1222334556
Q ss_pred HhCCChhHHHHHHHHHhHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CC--chhHHHHHHHHHH
Q 010575 186 AQMDQPNEAITLFRRMQVENVKPDE----IAMLAALSACAQLGAVELGEWIHNYIEQYGL---NT--IVPLNNALIDMYA 256 (507)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 256 (507)
...|++++|...+++....-...+. .....+...+...|+++.|...+.......- .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999988763211221 2344555667789999999999888765321 11 1234556677888
Q ss_pred hcCCHHHHHHHHHhcCC-------CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 010575 257 KSGKIGKALQVFENMKN-------KS----VITWTTMIAGLALHGLGREALDMFSRMERA--RVKPN--EITFIAILSAC 321 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~l~~~~ 321 (507)
..|+++.|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998876543 11 123445566677789999999999887653 11122 23444566677
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHhhCCC-C-CCH----HHHHHHHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKIEQY-----GCMIDLLGRAGYLQEAEKLLRRMPF-E-ANA----AIWGSLLAASN 390 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~----~~~~~l~~~~~ 390 (507)
...|+++.|.+.+..+............+ ...+..+...|+.+.|..++..... . ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998886421111111111 1122445568999999999877621 1 111 12345666788
Q ss_pred HcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 391 IYGDVELGECALQHLIKLE------PHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
..|+.++|...+++++... +....++..++.++.+.|+.++|.+.+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999997642 1223467788999999999999999999987433
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=8.9e-08 Score=80.76 Aligned_cols=147 Identities=10% Similarity=0.094 Sum_probs=114.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 010575 283 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 362 (507)
Q Consensus 283 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (507)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457788888776544332221 11 012235677888888888776 446678899999999999999
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010575 363 LQEAEKLLRRM-PFEA-NAAIWGSLLAAS-NIYGD--VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 437 (507)
Q Consensus 363 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 437 (507)
+++|...|+++ ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 4455 666777777764 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 010575 438 VMRDMG 443 (507)
Q Consensus 438 ~~~~~~ 443 (507)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997543
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.95 E-value=6.3e-08 Score=77.25 Aligned_cols=91 Identities=7% Similarity=-0.114 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+..+...+...|++++|...|+.+ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.++.+.|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444566666677777777777665 3333 55566667777777777777777777777777777777777777777777
Q ss_pred CchHHHHHHHHHH
Q 010575 428 RWNESGKIRKVMR 440 (507)
Q Consensus 428 ~~~~A~~~~~~~~ 440 (507)
++++|++.++...
T Consensus 107 ~~~eAi~~~~~Al 119 (144)
T PRK15359 107 EPGLAREAFQTAI 119 (144)
T ss_pred CHHHHHHHHHHHH
Confidence 7777777777665
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=8.7e-08 Score=84.37 Aligned_cols=182 Identities=13% Similarity=-0.011 Sum_probs=119.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHH
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKN--KS-V---ITWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITF 314 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~ 314 (507)
.....+..+...+...|+++.|...|+++.+ |+ . .++..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455566677777788888888888877654 21 1 35566777778888888888888887765221111 134
Q ss_pred HHHHHHHhcc--------CcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 010575 315 IAILSACCHV--------GLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSL 385 (507)
Q Consensus 315 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 385 (507)
..+..++... |++++|.+.|+.+... .|+. ..+..+..... ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 4444555443 6677777777777754 3332 22222211100 00000 0111245
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
...+...|++++|+..++++++..|+++ .++..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6678899999999999999999877654 68899999999999999999999988644
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=6.6e-07 Score=76.17 Aligned_cols=399 Identities=10% Similarity=0.007 Sum_probs=239.9
Q ss_pred cccCCCCChHHHHHHHHHHHccCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCccc
Q 010575 2 IVRGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--P-DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYS 78 (507)
Q Consensus 2 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 78 (507)
.-.|+.-..--+++.+..+.+..++++|++++..-.+ | +......|...|....++..|-..|+++.. ..|...-
T Consensus 2 ~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~q 79 (459)
T KOG4340|consen 2 AGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQ 79 (459)
T ss_pred CcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHH
Confidence 3345555555567788888899999999999876544 3 566778888888999999999999999987 4566555
Q ss_pred HHH-HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHH----HHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHH
Q 010575 79 FPF-VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALI----QMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAG 153 (507)
Q Consensus 79 ~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~ 153 (507)
|.. -...+.+.+.+..|+++...|... ++ ..+..+ ......+++..+..++++.+..+ +..+.+.....
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-~Ad~~in~gCl 153 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-EADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCC-ccchhccchhe
Confidence 543 235567888999999998887542 22 222222 22345789999999999988531 56666677777
Q ss_pred HHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCC-------------CCHH-----
Q 010575 154 YAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK-------------PDEI----- 211 (507)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------~~~~----- 211 (507)
..+.|+++.|.+-|+...+ ....+|+.- -+..+.++++.|++...+..++|++ ||..
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 7889999999999998876 234566644 4556789999999999999887754 2211
Q ss_pred ----------HHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHH---HHHHHhcCCCChh
Q 010575 212 ----------AMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAKSGKIGKA---LQVFENMKNKSVI 277 (507)
Q Consensus 212 ----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A---~~~~~~~~~~~~~ 277 (507)
.++.-...+.+.++++.|.+.+..|.-+ ....|+.+...+.-.-. .+++.+. ..++-.+..-...
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChH
Confidence 1222233356778888888888777533 23345555443322111 2223222 2333333223457
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh-ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVK-PNEITFIAILSACC-HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
||..++-.||++.-++-|-.++.+-...-.+ .+...|+ |+.++. -.-.++++.+-++.+.+.. .-.......-+.
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l--~~kLRklAi~vQ 388 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML--TEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9999999999999999988887653221111 1223333 333332 3345666665555443310 000000000011
Q ss_pred HHhhcCCHHHHH-HHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 356 LLGRAGYLQEAE-KLLRRMP--FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 356 ~~~~~g~~~~A~-~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
. .+..+-++|+ ..++... ...-......-.+.+.+..|+..+++.|+.-.+...++..
T Consensus 389 e-~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 389 E-ARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDV 449 (459)
T ss_pred H-HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccce
Confidence 1 1111111221 1222110 0001112233344567788999999999988876666443
No 104
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.90 E-value=5.7e-05 Score=74.29 Aligned_cols=386 Identities=13% Similarity=0.123 Sum_probs=189.6
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHH--HccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHH
Q 010575 52 CQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAV--VKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYD 129 (507)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 129 (507)
...+++..|+.....+.++ .|+.. |..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3446667777776666653 24432 34444444 4677777777777666555544 66677777777777777777
Q ss_pred HHHHHHhcccCCCChhhHHHHHHHHHhcCCHHH----HHHHHHhcCCCChhHHHHHHHHHHhCC-Ch---------hHHH
Q 010575 130 ARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNN----ARALFELMTEKNVISWTTLIAGYAQMD-QP---------NEAI 195 (507)
Q Consensus 130 A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~~-~~---------~~a~ 195 (507)
|..+|++.....|+......+..+|.+.+++.+ |.+++...++. +..+-++++...+.- .. .-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 777777777777776666666677777665543 45555544432 222233333333221 11 2234
Q ss_pred HHHHHHhHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH-HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 196 TLFRRMQVEN-VKPDEIAMLAALSACAQLGAVELGEWIHN-YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 273 (507)
Q Consensus 196 ~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 273 (507)
+.++.+.+.+ ..-+..-...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444444433 11111112222333445666777766663 333322233334444455666666666665555554443
Q ss_pred CChhHHHHHHHHH----------------HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH----
Q 010575 274 KSVITWTTMIAGL----------------ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRY---- 333 (507)
Q Consensus 274 ~~~~~~~~l~~~~----------------~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~---- 333 (507)
.+..-|...+..+ ...+..+...+..++......+......--+..-+-.-|+.+++...
T Consensus 255 k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 255 KGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred hCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 2111122211111 11112222222222222110010000111111111223444433222
Q ss_pred --------------------------HHHhHHhhCCCCChh-------HHHHHHHHHhhcCC-----HHHHHHHHhhC--
Q 010575 334 --------------------------FNIMKSRYGIEPKIE-------QYGCMIDLLGRAGY-----LQEAEKLLRRM-- 373 (507)
Q Consensus 334 --------------------------~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~~A~~~~~~~-- 373 (507)
+.... +..++.. .+.+.+..-.-.|. -+.-..++++.
T Consensus 335 fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~ 411 (932)
T KOG2053|consen 335 FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKL 411 (932)
T ss_pred hCCCcHhHhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 22111 1111111 01111111111221 11222222211
Q ss_pred ----C------CCCCH---------HHHHHHHHHHHHcCCH---HHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchH
Q 010575 374 ----P------FEANA---------AIWGSLLAASNIYGDV---ELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 431 (507)
Q Consensus 374 ----~------~~~~~---------~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 431 (507)
+ .-|.. -+.+.|+..+.+.++. -+|+.+++..+...|.|...-..++++|.-.|-+..
T Consensus 412 ~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~ 491 (932)
T KOG2053|consen 412 TYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPD 491 (932)
T ss_pred HHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChh
Confidence 1 11211 2345677788877764 578888888899999999999999999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 010575 432 SGKIRKVMRDMGVK 445 (507)
Q Consensus 432 A~~~~~~~~~~~~~ 445 (507)
|.+.++.+.-.++.
T Consensus 492 a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 492 AYELYKTLDIKNIQ 505 (932)
T ss_pred HHHHHHhcchHHhh
Confidence 99999998655553
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=1.1e-05 Score=86.16 Aligned_cols=259 Identities=14% Similarity=0.011 Sum_probs=139.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCC----CCh----hHHHHHHHHHHhCCChhHHHHHHHHHhHC----C-CCCCHHHHHHHHH
Q 010575 152 AGYAKVGDLNNARALFELMTE----KNV----ISWTTLIAGYAQMDQPNEAITLFRRMQVE----N-VKPDEIAMLAALS 218 (507)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~ 218 (507)
..+...|++++|...++.... .+. ...+.+...+...|++++|...+++.... | ..+...++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 344456666666666655432 111 23344555566677777777776665532 1 0111223444555
Q ss_pred HHhccCCHHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChhHHHHHH
Q 010575 219 ACAQLGAVELGEWIHNYIEQY----GLN--T-IVPLNNALIDMYAKSGKIGKALQVFENMKN------K--SVITWTTMI 283 (507)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~ 283 (507)
.+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 666677777777766655432 211 1 123344455556666777777776665432 1 122334455
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHH
Q 010575 284 AGLALHGLGREALDMFSRMERA----RVKPNEITF--IAILSACCHVGLVELGRRYFNIMKSRYGIEPK---IEQYGCMI 354 (507)
Q Consensus 284 ~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 354 (507)
..+...|++++|...+.+.... +........ ...+..+...|+.+.|...+...... ..... ...+..+.
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHH
Confidence 5666778888887777776432 111111011 11123344567777777776665431 11111 11134566
Q ss_pred HHHhhcCCHHHHHHHHhhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 355 DLLGRAGYLQEAEKLLRRM-------PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.++...|++++|...++++ +..+ ...+...+..++...|+.++|...+.+++++...
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 6777788888887777765 1111 1234555666777888888888888888775543
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=1.9e-05 Score=76.72 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=49.4
Q ss_pred cCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHH----------hCCCccCCceeEEEECCEEEEEEeCC-CCCCChHHH
Q 010575 408 LEPH-NSGNYAILSNIYAILGRWNESGKIRKVMR----------DMGVKKMPGCSYIEVSKRVHEFVAGD-TSHPDFDRL 475 (507)
Q Consensus 408 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 475 (507)
++|+ ||.....-++.+....++++|..++-..+ .+|++... ++.+...-. ...|.-.+-
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vte---------e~aE~mTp~Kd~~~~e~~R 1144 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTE---------EFAELMTPTKDDMPNEQER 1144 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH---------HHHHhcCcCcCCCccHHHH
Confidence 4554 56777777788888888888887765543 23332111 111111111 255666666
Q ss_pred HHHHHHHHHHHHhcC-cccCCCcc
Q 010575 476 YQILCKINGQMKFAE-HLQNEFSG 498 (507)
Q Consensus 476 ~~~l~~~~~~~~~~g-~~~~~~~~ 498 (507)
...|+++.+...++| |+.-++..
T Consensus 1145 ~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1145 KQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHHHHHHHhccchHHHHHHH
Confidence 778899999998888 66544433
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=4.2e-05 Score=76.00 Aligned_cols=376 Identities=14% Similarity=0.154 Sum_probs=261.3
Q ss_pred CChHHHHHHHHHHHccCChhHHHHHhccCC-CCCcc-----cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHH
Q 010575 8 QNNHLLSRFIDSCSSLGFSDYAYSIFTHKS-KPDVY-----LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPF 81 (507)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (507)
.||.-.+.-+.++...+-+.+-.++++++. .++++ .-|.|+-...+ -+..+..+..+++-..+ .| .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------h
Confidence 466667778888888898999999998865 34443 33444444344 34556666666654432 12 3
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHH
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLN 161 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 161 (507)
+...+...+-+++|..+|+.. ..+....+.|+.- -+.++.|-+.-++.. ....|..+..+-.+.|.+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchH
Confidence 455667777889999998765 4456666666553 467888888877766 4578999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 010575 162 NARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 241 (507)
Q Consensus 162 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 241 (507)
+|++-|-+. .|+..|..++....+.|.|++-.+++....+..-.|... +.++-+|++.+++.+.+.++ .
T Consensus 1122 dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~ 1190 (1666)
T KOG0985|consen 1122 DAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------A 1190 (1666)
T ss_pred HHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------c
Confidence 999988665 466789999999999999999999998888776666554 46788999999987766654 2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
-|+......+.+-+...|.++.|.-+|. ++.-|..|...+...|++..|...-++. .+..||..+-.+|
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence 5777777788888889999999988886 4557888889999999999988765543 2567888888888
Q ss_pred hccCcHHHHHHHHHHhHHhhCCC--CChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIE--PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 397 (507)
...+.+..|. +. |+. ....-..-++..|...|-+++.+.+++.. +... .-..|.-|...|.+- ++++
T Consensus 1260 vd~~EFrlAQ-----iC---GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~k 1330 (1666)
T KOG0985|consen 1260 VDKEEFRLAQ-----IC---GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEK 1330 (1666)
T ss_pred hchhhhhHHH-----hc---CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHH
Confidence 8777665542 22 433 34455667888888888898888888876 4332 333455555555443 3444
Q ss_pred HHHHHHHHhc-cC-C------CCCchHHHHHHHHHHcCCchHHHH
Q 010575 398 GECALQHLIK-LE-P------HNSGNYAILSNIYAILGRWNESGK 434 (507)
Q Consensus 398 A~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~~ 434 (507)
-.+.++-... ++ | +....|..+.-.|.+-..|+.|.-
T Consensus 1331 m~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1331 MMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4444443321 11 1 123356666666666666665543
No 108
>PLN02789 farnesyltranstransferase
Probab=98.86 E-value=1.8e-06 Score=78.35 Aligned_cols=177 Identities=10% Similarity=-0.005 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 010575 261 IGKALQVFENMKN---KSVITWTTMIAGLALHGLG--REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 335 (507)
Q Consensus 261 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (507)
+++++..++.+.+ .+..+|+.....+.+.|+. ++++.+++++.+... -|..+|.....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4555555554443 2333444443333444432 456666666666432 255666666666666677777777777
Q ss_pred HhHHhhCCCCChhHHHHHHHHHhhc---CCH----HHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHHH
Q 010575 336 IMKSRYGIEPKIEQYGCMIDLLGRA---GYL----QEAEKLLRRM-PFEA-NAAIWGSLLAASNIY----GDVELGECAL 402 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~----g~~~~A~~~~ 402 (507)
++++. -+.+...|+.....+.+. |.. ++++++..++ ...| |...|+.+...+... ++..+|...+
T Consensus 167 ~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 77653 233455555555444433 222 3555555444 4344 556777777777663 4456788889
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcC------------------CchHHHHHHHHHH
Q 010575 403 QHLIKLEPHNSGNYAILSNIYAILG------------------RWNESGKIRKVMR 440 (507)
Q Consensus 403 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 440 (507)
.++++.+|+++.++..|+++|.... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 9988889999999999999998743 2366888877774
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.85 E-value=1.8e-07 Score=74.57 Aligned_cols=123 Identities=13% Similarity=0.019 Sum_probs=100.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC
Q 010575 297 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 375 (507)
Q Consensus 297 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 375 (507)
.++++..+. .|+. +..+...+...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|+++ ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666654 4443 55567788899999999999999885 33457788899999999999999999999988 44
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 376 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 376 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
.| +...+..+..++...|++++|+..+++++++.|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 44 677889999999999999999999999999999999999888766544
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.84 E-value=2.6e-06 Score=84.12 Aligned_cols=373 Identities=14% Similarity=0.047 Sum_probs=218.5
Q ss_pred chHHHHHHHHHHHcCCCCC-cccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 010575 57 PLNAVILYNKIQASALRPD-NYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFD 135 (507)
Q Consensus 57 ~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 135 (507)
...|+..|-+..+. .|+ ...|..|...|....+...|.+.|+...+.+.. +......+.+.|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 55566655555442 232 234677777777666777888888877666533 56667777888888888888888755
Q ss_pred hcccCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC
Q 010575 136 ELSLRVW---NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD 209 (507)
Q Consensus 136 ~~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 209 (507)
...+..| -...|....-.|.+.++...|+.-|+.... .|...|..++.+|...|++..|.++|.+... +.|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 5444433 223344455566777888888888877664 3556777888889999999999998888766 3454
Q ss_pred HHHHHHH--HHHHhccCCHHHHHHHHHHHHHcC------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhc-------CC-
Q 010575 210 EIAMLAA--LSACAQLGAVELGEWIHNYIEQYG------LNTIVPLNNALIDMYAKSGKIGKALQVFENM-------KN- 273 (507)
Q Consensus 210 ~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~- 273 (507)
. +|... ...-+..|.+.++...+....... ...-..++-.+...+.-.|=..+|...++.- ..
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3 22222 223456777888777777665431 0011111111112222222222222222221 11
Q ss_pred ---CChhHHHHHHHHHH---HcC--ChH-HHHHH-HHHHHHCCCC--------------------CCHHHHHHHHHHHhc
Q 010575 274 ---KSVITWTTMIAGLA---LHG--LGR-EALDM-FSRMERARVK--------------------PNEITFIAILSACCH 323 (507)
Q Consensus 274 ---~~~~~~~~l~~~~~---~~~--~~~-~A~~~-~~~m~~~g~~--------------------p~~~~~~~l~~~~~~ 323 (507)
.+...|-.+..++. ... -+. -...+ +.+....+.- .+..+|..|+..|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 12222222222111 000 000 00000 1111111111 122334334333322
Q ss_pred -------c-CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcC
Q 010575 324 -------V-GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYG 393 (507)
Q Consensus 324 -------~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g 393 (507)
. .+...|+..++...+. ...+..+|+.|.-. ...|++.-|...|-+. ..+....+|..+...+....
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecc
Confidence 1 2234677777777642 23345566665544 6667777777777655 23346778999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
|++.|...|.++..++|.+...|...+.+....|+.-++..+|..
T Consensus 865 d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999877
No 111
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=2.3e-05 Score=76.07 Aligned_cols=236 Identities=11% Similarity=0.084 Sum_probs=148.2
Q ss_pred CChHHHHHHHH--HHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHc-C--------CCCCc
Q 010575 8 QNNHLLSRFID--SCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQAS-A--------LRPDN 76 (507)
Q Consensus 8 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~~ 76 (507)
-|+.|-..+++ .|...|+.+.|.+-.+.+... ..|..+.+.|.+.++.+-|.-.+-.|... | ..|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 35566666665 466789999999988888775 45999999999999998888777776542 1 1233
Q ss_pred ccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHh
Q 010575 77 YSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAK 156 (507)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~ 156 (507)
.+=..+.-.....|.+++|+.+|++..+.+ .|=..|...|.+++|.++-+.=.... =-.||.....-+-.
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH-Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH-LRNTYYNYAKYLEA 870 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee-hhhhHHHHHHHHHh
Confidence 222333444568899999999999887642 34456778899999998876432221 22456666666677
Q ss_pred cCCHHHHHHHHHhcCCC-----------------------ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHH
Q 010575 157 VGDLNNARALFELMTEK-----------------------NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 213 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 213 (507)
.++.+.|++.|++...+ |...|.-.....-..|+.+.|+.+|....+ |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 88899999999876532 222233233333344555555555544432 2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010575 214 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM 271 (507)
Q Consensus 214 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 271 (507)
-.+++..|-.|+.++|..+-++ .-|......|.+.|-..|++.+|..+|-+.
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3344445555666666555443 223344445666666666666666666544
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.84 E-value=4.2e-09 Score=59.73 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=31.2
Q ss_pred cCCCCChHHHHHHHHHHHccCChhHHHHHhccCC
Q 010575 4 RGLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKS 37 (507)
Q Consensus 4 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 37 (507)
.|++||..+|+.||+.||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999999999999999999999999999884
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=7.1e-07 Score=90.86 Aligned_cols=200 Identities=14% Similarity=0.157 Sum_probs=165.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--------SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEIT 313 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 313 (507)
|.....|-..|......++.++|++++++.... -...|.+++......|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667777888888999999999999887652 2357888888888888888999999998874 222356
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC---CHHHHHHHHHHH
Q 010575 314 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA---NAAIWGSLLAAS 389 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~ 389 (507)
|..|...|.+.+.+++|.++++.|.++++ -....|..+++.+.++.+-+.|..++.++ ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77888999999999999999999999766 56788999999999999999999999887 3333 344555566667
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
.+.||.+++..+|+..+.-.|.....|..+++.-.+.|+.+.+..+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999876653
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=4.9e-07 Score=84.02 Aligned_cols=250 Identities=10% Similarity=-0.016 Sum_probs=179.5
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
..-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+.++.+.. +.+..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344677888888888888887765 3456677777777788888888888888888776 55677777888888888888
Q ss_pred HHHHHHHHhcCCCC-hhHHHHHH---------HHHHHcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCcHHHH
Q 010575 262 GKALQVFENMKNKS-VITWTTMI---------AGLALHGLGREALDMFSRME-RARVKPNEITFIAILSACCHVGLVELG 330 (507)
Q Consensus 262 ~~A~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~a 330 (507)
..|.+.++.-.... ...|.... ..+.....+....++|-++. ..+..+|+.....|.-.|--.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88888877643211 11110000 11122223344555555554 445446777777787778889999999
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 331 RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
...|+.+... -+-|...||.|...+....+.++|+..|+++ .++|+- .....|..+|...|.+.+|...|-.++.+
T Consensus 450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999852 2446789999999999999999999999998 777854 47778999999999999999999999765
Q ss_pred CCC-----C-----CchHHHHHHHHHHcCCchHHHHH
Q 010575 409 EPH-----N-----SGNYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 409 ~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 435 (507)
.+. . ..+|..|=.++.-.++.|-+.++
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 543 1 24677776666666766644443
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.80 E-value=7.5e-07 Score=88.99 Aligned_cols=139 Identities=13% Similarity=0.089 Sum_probs=92.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 010575 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCM 353 (507)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (507)
++..+..|.....+.|++++|..+++...+. .|+. .....++.++.+.+++++|...+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 4566777777777777777777777777764 4544 4555666777777777777777777775 223345556666
Q ss_pred HHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 354 IDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
..++.+.|++++|..+|+++ ...| +..++..+..++...|+.++|...|+++++...+-...|.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 67777777777777777776 2233 3567777777777777777777777777665544334433
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.80 E-value=9.9e-07 Score=74.11 Aligned_cols=157 Identities=16% Similarity=0.120 Sum_probs=128.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (507)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...+.++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 55566777788888888777775443 233445555678888899999999999999986 668889999999999999
Q ss_pred cCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010575 360 AGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRK 437 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 437 (507)
.|++++|..-|.+. .+.| ++...+.+...+.-.||.+.|..++..+....+.++.+-.+|+.+....|++++|.++..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999988877 4444 556788888899999999999999999988888889999999999999999999998875
Q ss_pred HH
Q 010575 438 VM 439 (507)
Q Consensus 438 ~~ 439 (507)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 54
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=4.8e-07 Score=86.29 Aligned_cols=212 Identities=13% Similarity=0.032 Sum_probs=160.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCC
Q 010575 214 LAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGL 291 (507)
Q Consensus 214 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 291 (507)
..+...+.+.|-...|..+++++. .+..++.+|+..|+..+|..+..+-.+ |+...|..++...-...-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 345556667777777777776644 445677888888888888777665544 566777777777777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHh
Q 010575 292 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLR 371 (507)
Q Consensus 292 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 371 (507)
+++|.++++..... .-..+.....+.++++++.+.|+.-.+. .+....+|..+.-+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 77887777654332 1112222233468888888888877753 34456788888888899999999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 372 RM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 372 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.. ...| +...|+++-.+|.+.|+-.+|...+.++++-+-.+..+|.+...+..+.|.|++|++.+.++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 77 5566 456899999999999999999999999999888889999999999999999999999999886433
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=8.7e-07 Score=74.45 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHH
Q 010575 308 KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSL 385 (507)
Q Consensus 308 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l 385 (507)
.|+......+-..+...|+-+....+...... ..+.+......++....+.|++.+|...+++. +..+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44333225566677788888888888777654 44556667777999999999999999999998 556688999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
..+|.+.|+++.|...|.+++++.|+++...++++..|.-.|+++.|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999886443
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.70 E-value=0.0002 Score=66.67 Aligned_cols=129 Identities=7% Similarity=0.123 Sum_probs=86.1
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 010575 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117 (507)
Q Consensus 39 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 117 (507)
-|+.+|+.||+-+... .++++.+.++++.. .-| .+..|..-|..-...++++.++.+|.+.+..-. +...|...
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 4889999999987766 99999999999987 344 566788889999999999999999999987644 46666665
Q ss_pred HHHHHh-cCChHH----HHHHHHhcccC-CC---ChhhHHHHHHHH---------HhcCCHHHHHHHHHhcCC
Q 010575 118 IQMYAS-CKCIYD----ARKVFDELSLR-VW---NVAVWNTMVAGY---------AKVGDLNNARALFELMTE 172 (507)
Q Consensus 118 ~~~~~~-~g~~~~----A~~~~~~~~~~-~p---~~~~~~~li~~~---------~~~~~~~~A~~~~~~~~~ 172 (507)
+.--.+ .|+... ..+.|+-.... +. +...|+..+.-+ ....+++...+++.++..
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 553222 234333 23333333322 22 333455544332 234456667777877764
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=7.8e-06 Score=78.33 Aligned_cols=211 Identities=10% Similarity=0.045 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCC
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQ 190 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~ 190 (507)
.-..+...+.+.|-...|..+|++ ...|...+.+|+..|+..+|..+..+-.+ ||+..|..+.+......-
T Consensus 400 ~q~~laell~slGitksAl~I~Er-------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFER-------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHh-------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 334455566666666666666663 33455566666666666666665554443 455556666555555555
Q ss_pred hhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 191 PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFEN 270 (507)
Q Consensus 191 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 270 (507)
+++|.++.+..... .-..+.....+.++++++.+.++.-.+.. +....+|-.+..+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 56666655543221 11111111223456666666665555443 33445555555556666666666666655
Q ss_pred cCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 271 MKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 271 ~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
... | +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.++.|++.+.++..
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 443 2 33566666666666666666666666666554 22334444444455566666666666665544
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=3.6e-06 Score=74.05 Aligned_cols=182 Identities=15% Similarity=0.025 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Chh---HH
Q 010575 208 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN-T-IVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVI---TW 279 (507)
Q Consensus 208 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~---~~ 279 (507)
.....+......+...|+++.|...++.+.+.... + ....+..+..+|...|++++|...|+.+.+ | +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45567778888899999999999999999876421 1 124667788999999999999999999875 2 222 45
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHH
Q 010575 280 TTMIAGLALH--------GLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 350 (507)
Q Consensus 280 ~~l~~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 350 (507)
..+..++... |++++|.+.|+++... .|+. .....+..... .. . ... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~-~~~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------N-RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------H-HHH--------HHH
Confidence 5666666654 7889999999999876 4443 22222211100 00 0 000 111
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
..+...|.+.|++++|...+++. +..| ....+..++.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24566788899999999988887 2233 356788899999999999999998888766555
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.66 E-value=7.3e-07 Score=69.76 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
......+...+...|++++|.++|+-. ...| +..-|..|..+|...|++++|+..|.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344455667778899999999999987 4455 66678899999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 010575 425 ILGRWNESGKIRKVMRD 441 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~ 441 (507)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998863
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=4.2e-05 Score=64.55 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=37.5
Q ss_pred CCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchH
Q 010575 361 GYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 431 (507)
Q Consensus 361 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 431 (507)
+.+.+|.-+|+++ +..|++.+.+....++...|++++|..+++.++..+++++.++.+++-+-...|+-.+
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence 3445555555555 2445555555555555555555555555555555555555555555544444554433
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=1.3e-06 Score=69.31 Aligned_cols=95 Identities=21% Similarity=0.247 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
......+...+...|++++|...|+.+ ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666677777777777777766 3233 55667777777777788888888888887778887778888888888
Q ss_pred HcCCchHHHHHHHHHHh
Q 010575 425 ILGRWNESGKIRKVMRD 441 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~ 441 (507)
..|++++|...+++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888877754
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.63 E-value=1.9e-05 Score=80.98 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=137.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcccC-CC-----ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhHHHHH
Q 010575 110 DVHVVAALIQMYASCKCIYDARKVFDELSLR-VW-----NVAVWNTMVAGYAKVGDLNNARALFELMTEK-N-VISWTTL 181 (507)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~l 181 (507)
+...|-..|......+++++|.+++++.... .+ -...|.++++.-...|.-+...++|++..+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3445666667777777777777777776554 22 2345666666666667777777777776652 2 2456677
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCC
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN-TIVPLNNALIDMYAKSGK 260 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 260 (507)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.+..+.-.. .........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77777777777777777777664 2234556666777777777777777777766654211 123344445555566777
Q ss_pred HHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHH
Q 010575 261 IGKALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITFIAILSACCHVGLVE 328 (507)
Q Consensus 261 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~ 328 (507)
.+.++.+|+..... -...|+..+..-.++|+.+.+..+|++....++.|-. ..|...+..--+.|+-+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 77777777766542 3456777777777777777777777777776666543 33444444333444433
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.61 E-value=7.9e-06 Score=69.00 Aligned_cols=154 Identities=12% Similarity=0.089 Sum_probs=114.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 010575 252 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 331 (507)
Q Consensus 252 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 331 (507)
+..|...|+++.+....+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445777777777655543332221 01223566778888888877753 457788999999999999999999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHH-hhcCC--HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 332 RYFNIMKSRYGIEPKIEQYGCMIDLL-GRAGY--LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
..|++.... .+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999863 344677788888764 67777 59999999988 4455 66788888889999999999999999999
Q ss_pred ccCCCCCchH
Q 010575 407 KLEPHNSGNY 416 (507)
Q Consensus 407 ~~~p~~~~~~ 416 (507)
+..|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9888865433
No 127
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=8.3e-08 Score=54.39 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=21.9
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 010575 106 GLDSDVHVVAALIQMYASCKCIYDARKVFDEL 137 (507)
Q Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 137 (507)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666677777777777777777776666665
No 128
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.60 E-value=0.00054 Score=63.89 Aligned_cols=427 Identities=14% Similarity=0.137 Sum_probs=255.4
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--P-DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVL 83 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 83 (507)
+.|...|+.|+..+... ..++++++++++.. | ....|..-|+.-.+..+++....+|.+.+..- .+...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 56888999999998887 89999999999875 3 45779999999999999999999999998754 3455566555
Q ss_pred HHHH-ccCCcHHHH----HHHHHHH-HcCCCC-cHHHHHHHHHH---------HHhcCChHHHHHHHHhcccCCC-C---
Q 010575 84 KAVV-KLSTIELGR----EIHCQTV-GTGLDS-DVHVVAALIQM---------YASCKCIYDARKVFDELSLRVW-N--- 143 (507)
Q Consensus 84 ~~~~-~~~~~~~a~----~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~p-~--- 143 (507)
..-. ..++..... +.|+... +.|+++ +-..|+..+.. |....+++...++|.++..... +
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 5433 233333322 2333332 345443 23455555543 3334456677788888765411 2
Q ss_pred ----hhhHHHHHHHH-------HhcCCHHHHHHHHHhcCC---------CC------------hhHHHHHHHHHHhCCC-
Q 010575 144 ----VAVWNTMVAGY-------AKVGDLNNARALFELMTE---------KN------------VISWTTLIAGYAQMDQ- 190 (507)
Q Consensus 144 ----~~~~~~li~~~-------~~~~~~~~A~~~~~~~~~---------~~------------~~~~~~li~~~~~~~~- 190 (507)
-..|..-|+.. -+...+..|.++++++.. |. +..|-.+|.--..++-
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 12222112111 113345566666655431 00 1124344432211111
Q ss_pred -------hhHHHHHHHH-HhHCCCCCCHHHH-H----HHHHHHhccCCH-------HHHHHHHHHHHHcCCCCchhHHHH
Q 010575 191 -------PNEAITLFRR-MQVENVKPDEIAM-L----AALSACAQLGAV-------ELGEWIHNYIEQYGLNTIVPLNNA 250 (507)
Q Consensus 191 -------~~~a~~~~~~-m~~~~~~~~~~~~-~----~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~ 250 (507)
..+..-.+++ |+-.+..|+.... . ..-+.+...|+. +++..+++.....-...+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111112222 2222333332211 0 111123333433 445555555444333333444433
Q ss_pred HHHHHHhcC---CHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 010575 251 LIDMYAKSG---KIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACC 322 (507)
Q Consensus 251 l~~~~~~~~---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~ 322 (507)
+...--..- ..+.....++++.. .-..+|..++..-.+..-...|..+|.+..+.+..+ +....+.++..+|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 332211111 24445555555443 233578888888888888999999999999988777 6667778887776
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C--CCC--CHHHHHHHHHHHHHcCCHHH
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P--FEA--NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--~~~--~~~~~~~l~~~~~~~g~~~~ 397 (507)
+++.+-|.++|+.=.+++| -++..-...++-+...++-..|..+|++. + ..| ...+|..++.--...|+...
T Consensus 414 -skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred -cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 4899999999998887543 34445567788888999999999999988 2 233 34789999998899999999
Q ss_pred HHHHHHHHhccCCCC----CchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 398 GECALQHLIKLEPHN----SGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 398 A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
+.++-++....-|++ ...-..+++-|.-.+.+..-..=++.+
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999999887666522 123445666777677665554444444
No 129
>PLN02789 farnesyltranstransferase
Probab=98.59 E-value=8.5e-05 Score=67.55 Aligned_cols=227 Identities=13% Similarity=0.037 Sum_probs=132.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhHCCCCCCH-HHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDE-IAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 256 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (507)
..+-..+...++.++|+.++.++++.+ |+. ..+..--.++...| +++++...++.+.+.. +.+..+|+.....+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 333444555666777777777776642 333 23333333444445 4567777777766654 344445554444455
Q ss_pred hcCCH--HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---Cc--
Q 010575 257 KSGKI--GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV---GL-- 326 (507)
Q Consensus 257 ~~~~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~-- 326 (507)
+.|+. +++..+++.+.+ .|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 55542 556666666654 45567777777777778888888888888876533 445555554444333 22
Q ss_pred --HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc----CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC-----
Q 010575 327 --VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA----GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG----- 393 (507)
Q Consensus 327 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g----- 393 (507)
.+..+.....++. ..+-+...|+.+...+... ++..+|.+.+.+. ...| +......|+..|....
T Consensus 197 ~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~ 274 (320)
T PLN02789 197 AMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAE 274 (320)
T ss_pred ccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchh
Confidence 2455666655554 2344567777777777663 3446677777665 3333 4556667777765422
Q ss_pred -------------CHHHHHHHHHHHhccCCC
Q 010575 394 -------------DVELGECALQHLIKLEPH 411 (507)
Q Consensus 394 -------------~~~~A~~~~~~~~~~~p~ 411 (507)
..++|.++++.+-+.+|-
T Consensus 275 ~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 275 FRDTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235566666666555554
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=7.4e-05 Score=63.12 Aligned_cols=155 Identities=15% Similarity=0.105 Sum_probs=92.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcH
Q 010575 252 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH----VGLV 327 (507)
Q Consensus 252 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~ 327 (507)
...|+..|++++|++...... +....-.=+..+.+..+++-|...+++|.+- -+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 344666666666666666522 2223333334455566667777777777653 244566655555442 3456
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 010575 328 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDV-ELGECALQH 404 (507)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 404 (507)
..|.-+|+++.+ ..+|++.+.+....++...|++++|..+++.+ +...++.+...++..-...|.. +--.+.+.+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 777777777765 35677777777777777777777777777766 3333555665555554444443 444566666
Q ss_pred HhccCCCCC
Q 010575 405 LIKLEPHNS 413 (507)
Q Consensus 405 ~~~~~p~~~ 413 (507)
.....|+++
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 666777753
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.56 E-value=5.9e-05 Score=76.58 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhC
Q 010575 110 DVHVVAALIQMYASCKCIYDARKVFDELSLRVWN-VAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQM 188 (507)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 188 (507)
+...+..|+..|...+++++|.++.+......|+ ...|..+...+.+.++.+++.-+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 3445666666666666666666666655555553 23333333344444443333222 233333334
Q ss_pred CChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 010575 189 DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVF 268 (507)
Q Consensus 189 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 268 (507)
.++.-+.-+++.|.+. .-+...+-.+..+|.+.|+.+++..+++++.+.. +-++.+.|.+...|... ++++|..++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4443333344444442 2233355556666666666666666666666665 55556666666666666 666666655
Q ss_pred HhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010575 269 ENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 305 (507)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 305 (507)
.... ..+...+++.++.++|.++...
T Consensus 173 ~KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 173 KKAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 4432 2244445555555555555553
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=1.5e-05 Score=73.08 Aligned_cols=117 Identities=17% Similarity=0.130 Sum_probs=80.9
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A 398 (507)
+...|.++.|+..++.+.. ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3456777777777777765 33344555556667777777777777777776 44554 45566677777777777777
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
+..++.....+|+++..|..|+.+|...|+..+|.....+.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77777777777777777777777777777766666655554
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.55 E-value=3.5e-05 Score=78.20 Aligned_cols=234 Identities=12% Similarity=0.044 Sum_probs=144.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTE--KN-VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 219 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 219 (507)
+...|..|+..+...+++++|.++.+...+ |+ ...|-.+...+.+.++..++..+ .+ +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhh
Confidence 566777778888788888888888776554 22 23444444466666665555443 22 222
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHH
Q 010575 220 CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREAL 296 (507)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 296 (507)
.....++..+..+...+.+.+ -+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+.-.|+.. +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 223333333333444444432 2333556677777777777777777777765 3556777777777777 777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCC
Q 010575 297 DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 376 (507)
Q Consensus 297 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (507)
.++.+.... +...+++..+.++|.++.. ..+.+...+..+.+..... .+..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccc
Confidence 777766543 4445567777777777764 2222333333332222211 1122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 377 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
.-..++..+-..|...++++++..+++.+++.+|.|..+...++.+|..
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 2344556666777888899999999999999999999999999988873
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=6.1e-05 Score=63.11 Aligned_cols=186 Identities=11% Similarity=0.050 Sum_probs=130.2
Q ss_pred cCCCchHHHHHHHHHHHc---C-CCCCccc-HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 53 QTDNPLNAVILYNKIQAS---A-LRPDNYS-FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~---~-~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
...++++.++++..+... | ..|+..+ |..++-+....|+.+-|..+++.+...- +-+..+...-.-.+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 346778888888877652 3 4455543 5566677778889999999999987763 22333322223335567899
Q ss_pred HHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhH
Q 010575 128 YDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQV 203 (507)
Q Consensus 128 ~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 203 (507)
++|+++++.+.+..| |..++-.-+...-..|+--+|++-+....+ .|...|.-+...|...|++++|.-.+++++-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999999998877 677777777777777777788877776664 5888999999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcC
Q 010575 204 ENVKPDEIAMLAALSACAQLG---AVELGEWIHNYIEQYG 240 (507)
Q Consensus 204 ~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~ 240 (507)
.. +.+...+..+...+.-.| +.+.+.+++...++..
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 43 234444455555443333 5566777777776654
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=2.4e-06 Score=79.05 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 389 (507)
.....|+..+...++++.|+.+|+++.+. .|+ ....++..+...++-.+|.+++.+. ...| +...+......|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34455666777778899999999998864 354 3445777777888888888888877 3334 566677777788
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
...++++.|..+.+++.+..|++...|..|+.+|.+.|++++|+..++.++
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999998886
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=3.1e-05 Score=64.84 Aligned_cols=191 Identities=14% Similarity=0.110 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-hhHHHHHHHHHHHcCChHHH
Q 010575 224 GAVELGEWIHNYIEQY---G-LNTIVP-LNNALIDMYAKSGKIGKALQVFENMKNK--S-VITWTTMIAGLALHGLGREA 295 (507)
Q Consensus 224 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~A 295 (507)
.+.++..+++.++... | ..++.. +|..++-+....|+.+.|..+++.+... + ...-..-...+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 3556666666655532 2 333332 3334444455566666666666655432 1 11111112223445666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C
Q 010575 296 LDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P 374 (507)
Q Consensus 296 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 374 (507)
+++++.+.+.. +.|..++..=+...-..|+.-+|++-+....+ .+..|...|.-+...|...|++++|.-.++++ -
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 66666666553 22444554444444445555566666655555 34556666666666666666666666666665 2
Q ss_pred CCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCCchHH
Q 010575 375 FEA-NAAIWGSLLAASNIY---GDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 375 ~~~-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
.+| ++..+..+...+.-. .+.+.|.++|.++++++|.+...+.
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 334 333444444443222 2455566666666666664433333
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=5.2e-05 Score=69.66 Aligned_cols=146 Identities=16% Similarity=0.080 Sum_probs=117.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHH
Q 010575 276 VITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCM 353 (507)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 353 (507)
...+--....+...|++++|+..++.+... .| |+.........+...++..+|.+.++++... .|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHH
Confidence 334444455567789999999999999886 45 4555556677899999999999999999953 565 6667788
Q ss_pred HHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchH
Q 010575 354 IDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 431 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 431 (507)
.++|.+.|++.+|..++++. ..+-|+..|..|..+|...|+..++ ....+..|...|++++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a-----------------~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA-----------------LLARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH-----------------HHHHHHHHHhCCCHHH
Confidence 99999999999999999987 3444788999999999999998777 4456678888999999
Q ss_pred HHHHHHHHHhCC
Q 010575 432 SGKIRKVMRDMG 443 (507)
Q Consensus 432 A~~~~~~~~~~~ 443 (507)
|+..+....+..
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999998887543
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=6.5e-05 Score=75.43 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=121.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 010575 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIA 316 (507)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ 316 (507)
.+.+...+..|.......|.+++|..+++...+ | +...+..++..+.+.+++++|+...++.... .| +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688888899999999999999999998876 4 4567788889999999999999999999886 44 4566677
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGD 394 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 394 (507)
+..++.+.|++++|..+|+++.. ..+-+..++..+..++...|+.++|...|++. ...|....|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HH
Confidence 78888999999999999999986 33345788889999999999999999999988 2345555555443 23
Q ss_pred HHHHHHHHHHH
Q 010575 395 VELGECALQHL 405 (507)
Q Consensus 395 ~~~A~~~~~~~ 405 (507)
...-...+++.
T Consensus 232 ~~~~~~~~~~~ 242 (694)
T PRK15179 232 LNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHc
Confidence 33334555554
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=8e-06 Score=64.77 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=90.2
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC
Q 010575 298 MFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 375 (507)
Q Consensus 298 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 375 (507)
.+++.... .|+ ......+...+...|++++|.+.|+.+... .+.+...+..+...+...|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555553 443 345666777788899999999999998763 3456788888999999999999999999887 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 376 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 376 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
.| +...+..+...+...|++++|...++++++..|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 567788888899999999999999999999999876533
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1.7e-06 Score=74.27 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=37.2
Q ss_pred hcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 359 RAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
+.+++++|+..|.++ .+.| |++.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|++.|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 444444444444444 3333 22333333444444444444444444444444444444444444444445554444444
Q ss_pred HHH
Q 010575 437 KVM 439 (507)
Q Consensus 437 ~~~ 439 (507)
++.
T Consensus 173 kKa 175 (304)
T KOG0553|consen 173 KKA 175 (304)
T ss_pred Hhh
Confidence 443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=3e-05 Score=71.85 Aligned_cols=128 Identities=11% Similarity=0.081 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGL 326 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 326 (507)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++.+..... +-+...+..-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334566667778889999999999888777777778888888888899999998888652 3355666666677888999
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCC
Q 010575 327 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA 377 (507)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 377 (507)
++.|+.+.+++.. -.+-+..+|..|..+|...|+++.|+..++.+|..+
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999985 233346789999999999999999999999886443
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=3.1e-05 Score=62.08 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=55.1
Q ss_pred cCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCCHHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~ 397 (507)
.++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.+ ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554321110 0122223344455555555555555555 111222 123334445556666666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 398 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
|+..++.. ...+-.+..+..++++|.+.|++++|+..|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 12222344555666666666666666666654
No 143
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.30 E-value=0.0028 Score=58.09 Aligned_cols=410 Identities=11% Similarity=0.072 Sum_probs=225.7
Q ss_pred HccCChhHHHHHhccCCC---CCc------ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHH--Hcc
Q 010575 21 SSLGFSDYAYSIFTHKSK---PDV------YLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAV--VKL 89 (507)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--~~~ 89 (507)
-+.+++.+|.++|.++-+ .+. ..-+.++.+|..+ +.+.....+....+ ..| ...|-.+..++ .+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHHh
Confidence 378999999999988653 221 2344566666553 44544455555554 234 44566666654 478
Q ss_pred CCcHHHHHHHHHHHHc--CCC------------CcHHHHHHHHHHHHhcCChHHHHHHHHhcccC------CCChhhHHH
Q 010575 90 STIELGREIHCQTVGT--GLD------------SDVHVVAALIQMYASCKCIYDARKVFDELSLR------VWNVAVWNT 149 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~ 149 (507)
+.+..|.+.+..-... +.. +|...-+..++++...|++.++..+++++..+ .++..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899998888776554 221 12233466778899999999999999998765 358889988
Q ss_pred HHHHHHhcCC---------------HHHHHHHHHhcCCCChhHH----------HHHHHHHHhC--CChhHHHHHHHHHh
Q 010575 150 MVAGYAKVGD---------------LNNARALFELMTEKNVISW----------TTLIAGYAQM--DQPNEAITLFRRMQ 202 (507)
Q Consensus 150 li~~~~~~~~---------------~~~A~~~~~~~~~~~~~~~----------~~li~~~~~~--~~~~~a~~~~~~m~ 202 (507)
++-.+++.=- ++.+.-...++...+...| ..++....-. .+..--.+++....
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 6666655211 1111112222221121111 1122211111 11222223333333
Q ss_pred HCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC
Q 010575 203 VENVKPDEIA-MLAALSACAQLGAVELGEWIHNYIEQYGLN----TIVPLNNALIDMYAKSGKIGKALQVFENMK--NKS 275 (507)
Q Consensus 203 ~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~ 275 (507)
..-+.|+... ...+...+.+ +.+++..+-+.+....+. .-+.++..++....+.++...|...+.-+. +|+
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 3334455332 2233333333 445554444444433221 123456667777778888888877766543 333
Q ss_pred hhHH-------HHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH---HHhccCc-HHHHHHHHHHhHH
Q 010575 276 VITW-------TTMIAGLA----LHGLGREALDMFSRMERARVKPNE-ITFIAILS---ACCHVGL-VELGRRYFNIMKS 339 (507)
Q Consensus 276 ~~~~-------~~l~~~~~----~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~---~~~~~g~-~~~a~~~~~~~~~ 339 (507)
...- ..+-+..+ ..-+..+-+.+|+......+ |. .....|+. -+-+.|. -++|+.+++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 2211 11111222 11123334555555555432 32 22223332 2445555 7888899888875
Q ss_pred hhCCCCChhHHHHHH----HHHhhc---CCHH---HHHHHHhhCCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 010575 340 RYGIEPKIEQYGCMI----DLLGRA---GYLQ---EAEKLLRRMPFEA----NAAIWGSLLAA--SNIYGDVELGECALQ 403 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~A~~~~~ 403 (507)
- -+-|...-+.+. ..|..+ ..+. +-...+++.++.| +...-|.|..| +..+|++.++.-.-.
T Consensus 409 f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 F--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred h--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2 122333322221 222221 1122 2223334444444 44556667665 478999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 404 HLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 404 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.+.++.| ++.+|..++-++....+++||.+++.+++.
T Consensus 487 WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 487 WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 9999999 699999999999999999999999998863
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=7.5e-05 Score=67.00 Aligned_cols=265 Identities=13% Similarity=0.053 Sum_probs=161.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhccCC
Q 010575 150 MVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-EIAMLAALSACAQLGA 225 (507)
Q Consensus 150 li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~ 225 (507)
....+.+..++.+|+..+...++ | ++.-|..-...+...+++++|.--.+.-++. +|. .......-+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 34555566666667666666554 2 3344555566666666666666555544432 221 1233333333334444
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHH-HHHHHHcCChHHHHHHH
Q 010575 226 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTM-IAGLALHGLGREALDMF 299 (507)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l-~~~~~~~~~~~~A~~~~ 299 (507)
..+|...++ +...+ ....++..++.+.. |....|..+ ..++...|++++|...-
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 444443333 00000 11112222222221 222344433 34566778888888877
Q ss_pred HHHHHCCCCCCHHHHHHHHH--HHhccCcHHHHHHHHHHhHHhhCCCCChhHHH-------------HHHHHHhhcCCHH
Q 010575 300 SRMERARVKPNEITFIAILS--ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG-------------CMIDLLGRAGYLQ 364 (507)
Q Consensus 300 ~~m~~~g~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~g~~~ 364 (507)
....+.. ++ ..+..+++ ++...++.+.+...|++.+ .+.|+...-. .=.+-..+.|++.
T Consensus 193 ~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 193 IDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 6666542 11 22333333 3445678888888888877 4456533221 1222345789999
Q ss_pred HHHHHHhhC-CC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 365 EAEKLLRRM-PF-----EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 365 ~A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
+|.+.|.+. .+ .|+...|.....+..+.|+..+|+.-.+.+++++|....+|..-+.++...++|++|.+-+++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887 43 445666777777888999999999999999999999999999999999999999999999999
Q ss_pred HHhC
Q 010575 439 MRDM 442 (507)
Q Consensus 439 ~~~~ 442 (507)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 8644
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.29 E-value=8.3e-07 Score=63.52 Aligned_cols=78 Identities=24% Similarity=0.280 Sum_probs=50.4
Q ss_pred cCCHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHH
Q 010575 360 AGYLQEAEKLLRRM-PFEA---NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 435 (507)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666666666666 1122 344455567777777777777777777 666666666666667777777777777777
Q ss_pred HHH
Q 010575 436 RKV 438 (507)
Q Consensus 436 ~~~ 438 (507)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=4.8e-05 Score=60.94 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCc----ccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcH--HHHHHH
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDN----YSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDV--HVVAAL 117 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 117 (507)
|..++..+ ..++...+...++.+.... |+. ...-.+...+...|++++|...|+.+......++. .....|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 44445444 3666666766677766642 222 12223345556677777777777777766533322 234445
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 118 IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFEL 169 (507)
Q Consensus 118 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 169 (507)
..++...|++++|+..++......+....+......+.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666677777777777766544433444555555666666666666666554
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.28 E-value=1.7e-05 Score=73.80 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=48.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 397 (507)
.+...|+++.|+..|+++... .+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344445555555555555532 1223444444555555555555555555544 2223 33344445555555555555
Q ss_pred HHHHHHHHhccCCCCCchHHHH
Q 010575 398 GECALQHLIKLEPHNSGNYAIL 419 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l 419 (507)
|+..|+++++++|+++.+...+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 5555555555555554444333
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.27 E-value=2.1e-06 Score=58.75 Aligned_cols=64 Identities=27% Similarity=0.277 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC-CchHHHHHHHHHHh
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG-RWNESGKIRKVMRD 441 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 441 (507)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.+|.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999 79999999998764
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=1.6e-05 Score=61.36 Aligned_cols=90 Identities=14% Similarity=0.002 Sum_probs=44.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHHH
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN---SGNYAILSNI 422 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 422 (507)
..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.++...|++ +.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444555555555555444 11121 2234444555555555555555555555555443 2345555555
Q ss_pred HHHcCCchHHHHHHHHHH
Q 010575 423 YAILGRWNESGKIRKVMR 440 (507)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~ 440 (507)
+.+.|++++|.+.++++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHhCChHHHHHHHHHHH
Confidence 555555555555555554
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=1.4e-05 Score=58.71 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=73.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666777788888888888776 3334 34567777778888889999999999998888888888888888999999
Q ss_pred CchHHHHHHHHHHh
Q 010575 428 RWNESGKIRKVMRD 441 (507)
Q Consensus 428 ~~~~A~~~~~~~~~ 441 (507)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999988887754
No 151
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.22 E-value=2.9e-06 Score=57.89 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=45.6
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
...|++++|+..++++++..|++..++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999988863
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.3e-06 Score=49.34 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=28.4
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCc
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASALRPDN 76 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 76 (507)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=3.6e-05 Score=59.40 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=73.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHH
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLL 386 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~ 386 (507)
++..+...+.+.|++++|...|..+...+.-.+ ....+..+..++.+.|++++|...|+.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455566667777888888888877775421111 1345556777788888888888888776 22232 45677777
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
.++...|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 8888889999999999999888888765443
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00016 Score=62.84 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=88.1
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCCchHH
Q 010575 343 IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIY---GDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
.+-|...|..|...|.+.|++..|..-|.+. .+. +++..+..+..++... ....++..+++++++.+|+|.++..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3567899999999999999999999999988 333 4667777777776443 3568999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 418 ILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
.|+..+...|++.+|...|+.|.+....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999866553
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=2.6e-05 Score=67.15 Aligned_cols=108 Identities=14% Similarity=0.036 Sum_probs=77.8
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A 398 (507)
+.+.+++.+|+..|.+++. -.+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4566788888888888874 22335566666677888888888888877766 55553 45788888888888888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCch
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWN 430 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (507)
++.|+++++++|++......|-.+-.+.+...
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 88888888888888776666655554444433
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.15 E-value=6.3e-06 Score=55.59 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=49.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+...+...|++++|+..|+++++..|+++.++..++.++.+.|++++|+.+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999888644
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.14 E-value=3.8e-06 Score=48.01 Aligned_cols=33 Identities=21% Similarity=0.542 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 010575 42 YLYNTTIKALCQTDNPLNAVILYNKIQASALRP 74 (507)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 74 (507)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 158
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=7.5e-06 Score=47.13 Aligned_cols=33 Identities=36% Similarity=0.639 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPN 310 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 310 (507)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.08 E-value=5e-05 Score=62.92 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
...+..+...+...|++++|...|+++ ...|+ ...+..+...+.+.|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666677777777777777766 22222 3567778888888899999999999999888888888888888
Q ss_pred HHHHcCC
Q 010575 422 IYAILGR 428 (507)
Q Consensus 422 ~~~~~g~ 428 (507)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.06 E-value=9e-05 Score=69.03 Aligned_cols=104 Identities=11% Similarity=-0.034 Sum_probs=83.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 281 TMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 281 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
.....+...|++++|+..|+++++.. +-+...|..+..+|...|++++|+..++++... .+.+...|..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 34566778899999999999999863 336678888889999999999999999999863 234677888999999999
Q ss_pred CCHHHHHHHHhhC-CCCCCHHHHHHHHH
Q 010575 361 GYLQEAEKLLRRM-PFEANAAIWGSLLA 387 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 387 (507)
|++++|...|+++ ...|+.......+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999987 55665554444443
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.05 E-value=0.00034 Score=68.12 Aligned_cols=139 Identities=13% Similarity=0.040 Sum_probs=75.9
Q ss_pred CChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHhHH
Q 010575 274 KSVITWTTMIAGLAL--HG---LGREALDMFSRMERARVKPNE-ITFIAILSACCHV--------GLVELGRRYFNIMKS 339 (507)
Q Consensus 274 ~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 339 (507)
.|...|...+.+... .+ ...+|..+|++..+. .|+. ..+..+..++... .+...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 466677777666433 22 356778888887775 4543 3444333332211 112233333333222
Q ss_pred hhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 340 RYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
....+.++..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.+++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1012233455555555555566677777766666 45566666666666666677777777777777766666554
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.03 E-value=5.6e-05 Score=62.41 Aligned_cols=94 Identities=11% Similarity=-0.076 Sum_probs=75.8
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 420 (507)
....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777788889999999988877 22232 347888889999999999999999999999999888888888
Q ss_pred HHHH-------HcCCchHHHHHHHHH
Q 010575 421 NIYA-------ILGRWNESGKIRKVM 439 (507)
Q Consensus 421 ~~~~-------~~g~~~~A~~~~~~~ 439 (507)
.++. +.|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666554
No 163
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=1.1e-05 Score=46.10 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCC
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP 208 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 208 (507)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777765
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.00 E-value=0.0012 Score=52.76 Aligned_cols=133 Identities=12% Similarity=0.018 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C---CCCCHHHH
Q 010575 307 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P---FEANAAIW 382 (507)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~~~~~~ 382 (507)
..|+..--..|..+....|+..+|...|++.... -+.-|......+.++....+++..|...++++ . ....+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3667766677888889999999999999988873 34557778888888888899999999988877 2 22244456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..+...+...|.++.|+..|+.++..-|+ +..-...+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 67788899999999999999999998888 77777888899999998888776665543
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.99 E-value=0.00011 Score=53.81 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=50.5
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG 393 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 393 (507)
.+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++.. ...| +..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444444555555555555555432 1222344455555555556666666666554 2222 3345556666666667
Q ss_pred CHHHHHHHHHHHhccCC
Q 010575 394 DVELGECALQHLIKLEP 410 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p 410 (507)
+.+.|...++++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777766666555
No 166
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.025 Score=56.52 Aligned_cols=91 Identities=7% Similarity=0.059 Sum_probs=54.8
Q ss_pred HHHHHHHHhccCcHHH---HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC---CCCCHHHHHHHHH
Q 010575 314 FIAILSACCHVGLVEL---GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP---FEANAAIWGSLLA 387 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~ 387 (507)
.+.|+..+.+.++... |+-+++.... .-+.|..+--.++..|+-.|-+..|.++|+.+. ++-|...|. +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence 4566777877777653 4444444443 223345555678899999999999999999884 222332222 223
Q ss_pred HHHHcCCHHHHHHHHHHHhc
Q 010575 388 ASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~ 407 (507)
.+...|++..+...+....+
T Consensus 516 ~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHHhcccchhHHHHHHHHHH
Confidence 34455666666555555543
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=97.95 E-value=0.001 Score=52.74 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=77.2
Q ss_pred HHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCch
Q 010575 353 MIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 430 (507)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (507)
...-+-..|++++|..+|+-+ -. .-+..-|..|..+|...+++++|+..|..+..++++||......+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456899999999999977 22 2366678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 010575 431 ESGKIRKVMRD 441 (507)
Q Consensus 431 ~A~~~~~~~~~ 441 (507)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998863
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=3.9e-05 Score=54.78 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=30.8
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA-AIWGSLLAASNIYGDVELGECALQ 403 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 403 (507)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++.+..|.. .....+..++...|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4444444444444433111112223333444444444444444444443222211 222233344444555555554444
Q ss_pred H
Q 010575 404 H 404 (507)
Q Consensus 404 ~ 404 (507)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 3
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.89 E-value=3.5e-05 Score=51.89 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=48.2
Q ss_pred HHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 353 MIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
+...+.+.|++++|.+.|+++ ...| +...+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888887 4455 556788888888999999999999999999999864
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.87 E-value=5.3e-05 Score=52.42 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=50.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
..|.+.+++++|.++++++++.+|+++..+...+.++.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467888999999999999999999999999999999999999999999999987543
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.0006 Score=56.45 Aligned_cols=131 Identities=14% Similarity=0.106 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHH
Q 010575 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPN--EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGC 352 (507)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 352 (507)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++.... .+-+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 334666777777778888888888887776433322 356667777777788888888888777753 2224555566
Q ss_pred HHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 353 MIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
+...+...|+...+..-++.. ...+++|.++++++++.+|++ +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544332221 123677888899988888886 5455555544443
No 172
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.83 E-value=0.00084 Score=60.32 Aligned_cols=134 Identities=15% Similarity=0.201 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA-CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367788888888888999999999988543 2233444444433 33357788899999999985 4567788888999
Q ss_pred HHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 356 LLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.+...|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 22233 34899999988999999999999999998888843
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.82 E-value=0.0041 Score=54.44 Aligned_cols=180 Identities=11% Similarity=-0.024 Sum_probs=94.9
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccH----HHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHH
Q 010575 41 VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSF----PFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAA 116 (507)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (507)
...+-.....+...|++++|+..|+.+... -|+...- -.+..++.+.++++.|...+++.++..+......+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 333334455556778888888888888773 3443221 3455667788888888888888888765433333333
Q ss_pred HHHHHHh--cC---------------C---hHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 010575 117 LIQMYAS--CK---------------C---IYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVI 176 (507)
Q Consensus 117 l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (507)
.+.+.+. .+ + ..+|...|+++..+.|+. .-..+|...+..+...=..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S-------------~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS-------------QYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC-------------hhHHHHHHHHHHHHHHHHH
Confidence 3333321 11 1 123444444444444432 1122222222222211111
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010575 177 SWTTLIAGYAQMDQPNEAITLFRRMQVE--NVKPDEIAMLAALSACAQLGAVELGEWIHNY 235 (507)
Q Consensus 177 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 235 (507)
.--.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|..+...
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1123445577777777777777777654 2223344455555666666666666555443
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.014 Score=53.08 Aligned_cols=268 Identities=11% Similarity=-0.067 Sum_probs=133.1
Q ss_pred HHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHH
Q 010575 85 AVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNA 163 (507)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A 163 (507)
.+.+..++..|+..+...++..+. +..-|..-...+...|++++|.--.++-....| ......-.-.++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344555666777777777776544 344555555566666777766655554444333 222333334444444445555
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCC-CCCHHHHHHH-HHHHhccCCHHHHHHHHHHHHHcCC
Q 010575 164 RALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPDEIAMLAA-LSACAQLGAVELGEWIHNYIEQYGL 241 (507)
Q Consensus 164 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~ 241 (507)
...++. ...| ....++..++....... +|.-.++..+ ..++...|+.+.|...-....+..
T Consensus 137 ~~~~~~-----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld- 199 (486)
T KOG0550|consen 137 EEKLKS-----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD- 199 (486)
T ss_pred HHHhhh-----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-
Confidence 544441 0101 01112222222222111 1222333222 123445566666655555555443
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---------------hHHHHHHHHHHHcCChHHHHHHHHHHHHC-
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---------------ITWTTMIAGLALHGLGREALDMFSRMERA- 305 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~- 305 (507)
..+....-.-..++.-.++.+.|...|++...-++ ..|..-..-..+.|++.+|.+.+.+.+..
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 11111111111223344566666666666554222 12333344456778888888888877653
Q ss_pred --CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 306 --RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 306 --g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
...|+...|.....+..+.|+..+|+.-.+...+ +.+. ...|..-..++...+++++|.+-|++.
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555666666667777888888777776663 2222 122222234455567777777777765
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.79 E-value=0.0056 Score=55.29 Aligned_cols=124 Identities=13% Similarity=0.169 Sum_probs=66.8
Q ss_pred HHHHHHhc-CCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HH
Q 010575 251 LIDMYAKS-GKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERARVK-----PNEI-TF 314 (507)
Q Consensus 251 l~~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-----p~~~-~~ 314 (507)
+...|... |+++.|.+.|++..+ .. ..++..+...+.+.|++++|.++|++....... .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33444444 555555555554432 11 124455667788888888888888887654221 1221 23
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhh-CCCCC--hhHHHHHHHHHhh--cCCHHHHHHHHhhCC
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRY-GIEPK--IEQYGCMIDLLGR--AGYLQEAEKLLRRMP 374 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 374 (507)
...+-++...||+..|...++...... ++..+ ......|+.++-. ...+++|..-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 333445566788888888888876321 22222 2344556666643 345677777777773
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=3.2e-05 Score=42.99 Aligned_cols=29 Identities=17% Similarity=0.446 Sum_probs=20.5
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASA 71 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 71 (507)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.77 E-value=0.029 Score=51.10 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 329 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 329 (507)
..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-..+... +-++..|..++.+|.+.|+..+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3344455566666666666666666666666666666666666655543221 1123556666666666666666
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhh
Q 010575 330 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 372 (507)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (507)
|..+...+. + ..-+..|.++|++.+|.+.--+
T Consensus 256 A~~yI~k~~-------~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKIP-------D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhCC-------h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 665554421 1 2345556666666666554433
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.76 E-value=0.00097 Score=55.00 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKP--NEITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
..|..++..+...|++++|+..|++.......| ...++..+...+...|++++|+..++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555566666666666555432221 123455555555555666666666555553
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.75 E-value=0.00025 Score=66.20 Aligned_cols=119 Identities=13% Similarity=0.022 Sum_probs=83.9
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHHc--CCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHH
Q 010575 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQAS--ALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAA 116 (507)
Q Consensus 39 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (507)
-+......++..+....+.+.+..++-+.+.. ....-+.|..++++.|...|..+.+..+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34455666677767777777787777777764 2223345667888888888888888888888888888888888888
Q ss_pred HHHHHHhcCChHHHHHHHHhcccC--CCChhhHHHHHHHHHhc
Q 010575 117 LIQMYASCKCIYDARKVFDELSLR--VWNVAVWNTMVAGYAKV 157 (507)
Q Consensus 117 l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~li~~~~~~ 157 (507)
|++.+.+.|++..|.++...|..+ ..+..++..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888777655 22445555555555554
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.75 E-value=0.0015 Score=58.89 Aligned_cols=167 Identities=13% Similarity=0.141 Sum_probs=84.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 178 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-----EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 178 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
|......|-..+++++|.+.|.+..+.....+ ...|.....++.+ .+++.|...++ ..+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~---------------~A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYE---------------KAI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHH---------------HHH
Confidence 33456667777778777777766543211000 1122222222222 24444444443 334
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHhccC
Q 010575 253 DMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALH-GLGREALDMFSRMER----ARVKPN--EITFIAILSACCHVG 325 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g 325 (507)
..|...|++..|-+++. .+...|... |++++|++.|++..+ .| .+. ...+..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 55666777766655543 345556666 777777777777654 22 111 134555666677777
Q ss_pred cHHHHHHHHHHhHHhhCCCC-----Ch-hHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 326 LVELGRRYFNIMKSRYGIEP-----KI-EQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
++++|.++|+++... .... +. ..+...+-++...|++..|...+++.
T Consensus 170 ~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp -HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777653 1111 11 12223333455566777777766664
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.72 E-value=0.0017 Score=51.14 Aligned_cols=97 Identities=10% Similarity=0.004 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010575 248 NNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 324 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 324 (507)
.-.+...+...|++++|.++|+.+.. .+..-|-.|..++-..|++.+|+..|.......+ -|+..+-.+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 34556667778888888888887664 3456777788888888888888888888877642 3667777788888888
Q ss_pred CcHHHHHHHHHHhHHhhCCCC
Q 010575 325 GLVELGRRYFNIMKSRYGIEP 345 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~ 345 (507)
|+.+.|.+.|+......+-.|
T Consensus 117 G~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 117 DNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CCHHHHHHHHHHHHHHhccCh
Confidence 888888888888876544333
No 182
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.00031 Score=51.13 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCC-CCCcccHHHHHHHHHccC--------CcHHHHHHHHHHHHcCCCCcHHHH
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASAL-RPDNYSFPFVLKAVVKLS--------TIELGREIHCQTVGTGLDSDVHVV 114 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 114 (507)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +....+.+|++|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999887543 244678899999999999999999
Q ss_pred HHHHHHHHh
Q 010575 115 AALIQMYAS 123 (507)
Q Consensus 115 ~~l~~~~~~ 123 (507)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987764
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.69 E-value=0.00045 Score=62.11 Aligned_cols=129 Identities=10% Similarity=0.021 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH---HhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-------C-CCCCH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMK---SRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-------P-FEANA 379 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~~ 379 (507)
..|..|...|.-.|+++.|+...+.=. +.+|-.. ....+..+.+++.-.|+++.|.+.|+.. + .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666677777788888887665422 2233222 2456677888888888888888888764 1 12245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLE------PHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+..+|..+|.-..++++|+.++.+=+.+. -....++..|+.+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566778888888888888888887754322 2235678888888888888888888776654
No 184
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.69 E-value=2.3e-05 Score=44.33 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=31.3
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHcCCchHHHH
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 434 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 434 (507)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
No 185
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=5.8e-05 Score=41.87 Aligned_cols=29 Identities=34% Similarity=0.685 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhHCC
Q 010575 177 SWTTLIAGYAQMDQPNEAITLFRRMQVEN 205 (507)
Q Consensus 177 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 205 (507)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56677777777777777777777776655
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=6.2e-05 Score=51.24 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=24.6
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
..|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555542 1224444445555555555555555555555
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.68 E-value=0.00075 Score=51.22 Aligned_cols=86 Identities=19% Similarity=0.069 Sum_probs=48.5
Q ss_pred HHHHhhcCCHHHHHHHHhhC---CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHHH
Q 010575 354 IDLLGRAGYLQEAEKLLRRM---PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH---NSGNYAILSNIYAI 425 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~---~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 425 (507)
..++-..|+.++|+.+|++. +... ....+..+..++...|++++|..++++.+...|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 33444555555665555554 1111 1224445555666666666666666666665565 44555555666666
Q ss_pred cCCchHHHHHHHHH
Q 010575 426 LGRWNESGKIRKVM 439 (507)
Q Consensus 426 ~g~~~~A~~~~~~~ 439 (507)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 67777766665443
No 188
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.67 E-value=0.047 Score=50.44 Aligned_cols=378 Identities=13% Similarity=0.070 Sum_probs=188.9
Q ss_pred HHHHHHHHHHccCChhHHHHHhccCCC-CCcccHHHHHHHH--HcCCCchHHHHHHHHHHHc--CCCC------------
Q 010575 12 LLSRFIDSCSSLGFSDYAYSIFTHKSK-PDVYLYNTTIKAL--CQTDNPLNAVILYNKIQAS--ALRP------------ 74 (507)
Q Consensus 12 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--~~~p------------ 74 (507)
..+.++++|-. .+.+.....+....+ -....|-.+..++ -+.+.+..|++.+...... +..|
T Consensus 48 l~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 48 LGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 34566666654 345555554444433 1134466666543 4778899999888877664 3322
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC-CCCh-hhHH
Q 010575 75 DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGL----DSDVHVVAALIQMYASCKCIYDARKVFDELSLR-VWNV-AVWN 148 (507)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~-~~~~ 148 (507)
|..-=+..+..+...|++.+++.+++++...=+ ..+..+|+.++-.+.++= |-++.+. .-|. .-|.
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY--------fLEl~e~~s~dl~pdyY 198 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY--------FLELKESMSSDLYPDYY 198 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH--------HHHHHHhcccccChHHH
Confidence 111123456677899999999998888876533 478888888766665431 1111111 0010 1122
Q ss_pred HHHHHHHhc-CC---------------------------------HHHHHHHHHhcC-CCCh-hHHHHHHHHHHhCCChh
Q 010575 149 TMVAGYAKV-GD---------------------------------LNNARALFELMT-EKNV-ISWTTLIAGYAQMDQPN 192 (507)
Q Consensus 149 ~li~~~~~~-~~---------------------------------~~~A~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~ 192 (507)
-++-.|.+. .. +-.+++.++.-- .|+- -....+...+.+ +.+
T Consensus 199 emilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e 276 (549)
T PF07079_consen 199 EMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPE 276 (549)
T ss_pred HHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChH
Confidence 222222221 00 111111111110 1211 112223333333 455
Q ss_pred HHHHHHHHHhHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHH-------HHHHHHHHh----
Q 010575 193 EAITLFRRMQVENVKP----DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLN-------NALIDMYAK---- 257 (507)
Q Consensus 193 ~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~---- 257 (507)
++..+.+.+....+.+ =..+|..++....+.++...|.+.+..+.-.. |+..+- ..+-+..+.
T Consensus 277 ~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~ 354 (549)
T PF07079_consen 277 QVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDES 354 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHH
Confidence 5555555444332111 23467777777888888888877777665443 222111 122222221
Q ss_pred cCCHHHHHHHHHhcCCCChh-----HHHH-HHHHHHHcCC-hHHHHHHHHHHHHCCCCC-CHHHHH----HHHHHHhc--
Q 010575 258 SGKIGKALQVFENMKNKSVI-----TWTT-MIAGLALHGL-GREALDMFSRMERARVKP-NEITFI----AILSACCH-- 323 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~-----~~~~-l~~~~~~~~~-~~~A~~~~~~m~~~g~~p-~~~~~~----~l~~~~~~-- 323 (507)
.-+..+=..++..+...|+. .|-. -..-+.+.|. -++|+++++...+- .| |...-+ .+=.+|.+
T Consensus 355 ~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaL 432 (549)
T PF07079_consen 355 YTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQAL 432 (549)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHH
Confidence 11233334455555444432 1211 1223445554 67778887777663 22 222211 11122322
Q ss_pred -cCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHH--HhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCH
Q 010575 324 -VGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDL--LGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDV 395 (507)
Q Consensus 324 -~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 395 (507)
...+.+-..+-+-+.+. |++|- ...-|.|.++ +..+|++.++.-.-.-. .+.|++.+|..+.-......++
T Consensus 433 s~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y 511 (549)
T PF07079_consen 433 SMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRY 511 (549)
T ss_pred hhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhH
Confidence 23344444444434333 76663 2334444443 44677887776554444 5567777888777777777788
Q ss_pred HHHHHHHHHH
Q 010575 396 ELGECALQHL 405 (507)
Q Consensus 396 ~~A~~~~~~~ 405 (507)
++|..++..+
T Consensus 512 ~eA~~~l~~L 521 (549)
T PF07079_consen 512 QEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhC
Confidence 8887777665
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.66 E-value=0.0024 Score=62.32 Aligned_cols=136 Identities=13% Similarity=0.094 Sum_probs=98.9
Q ss_pred CCCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHH
Q 010575 305 ARVKPNEITFIAILSACCH--V---GLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRA--------GYLQEAEKLL 370 (507)
Q Consensus 305 ~g~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~ 370 (507)
.+.+.+...|...+++... . ++...|..+|+++.+. .|+ ...|..+..++... ++...+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3456677888888887442 2 3477899999999853 665 34444444333221 2344555555
Q ss_pred hhC---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 371 RRM---P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 371 ~~~---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
++. + ...++..|..+.......|++++|...++++++++|+ ...|..++.++...|+.++|.+.+++....+.
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 553 1 3335677888877777889999999999999999995 78999999999999999999999999864443
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.62 E-value=0.00015 Score=49.42 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG-DVELGECALQHLIKLEP 410 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 410 (507)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777778888888888888888776 3344 4557788888888888 68999999999888887
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.00088 Score=60.18 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL-LGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAA 388 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 388 (507)
.+|..++...-+.+..+.|..+|.++.+. -..+..+|...... |...++.+.|.++|+.. ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888999999999999999853 23345556555555 33356777799999988 344577889999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+...|+.+.|..+|++++..-|.+. .+|...+..-.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999988766633 5888999888999999999999988864
No 192
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.00076 Score=63.05 Aligned_cols=116 Identities=8% Similarity=-0.007 Sum_probs=71.6
Q ss_pred CCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC--CCChhhH
Q 010575 72 LRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTG--LDSDVHVVAALIQMYASCKCIYDARKVFDELSLR--VWNVAVW 147 (507)
Q Consensus 72 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 147 (507)
.+.+......+++.+....+.+.+..++-...... ...-..|..++++.|.+.|..+.++.++..=... .||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 33455556666666666666777777666665541 2222345567777777777777777777665544 4577777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHh
Q 010575 148 NTMVAGYAKVGDLNNARALFELMTE----KNVISWTTLIAGYAQ 187 (507)
Q Consensus 148 ~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~ 187 (507)
+.|++.+.+.|++..|.++...|.. .+..++..-+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777777777766653 233444444444443
No 193
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.59 E-value=0.079 Score=50.90 Aligned_cols=393 Identities=14% Similarity=0.097 Sum_probs=230.2
Q ss_pred HHHhccCCC--CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCccc-HHHHHHHHHccCCcHHHHHHHHHHHHcC
Q 010575 30 YSIFTHKSK--PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYS-FPFVLKAVVKLSTIELGREIHCQTVGTG 106 (507)
Q Consensus 30 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 106 (507)
.+.|+.... -+...|+.+|.---.....+.+..++..++.. -|...- |......=.+.|..+.+.++|++-+..
T Consensus 32 ~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a- 108 (577)
T KOG1258|consen 32 LDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA- 108 (577)
T ss_pred hhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-
Confidence 344554443 35566777776655555566677777777652 354443 333334446777888888888887764
Q ss_pred CCCcHHHHHHHHHHHHh-cCChHHHHHHHHhcccC-C---CChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH
Q 010575 107 LDSDVHVVAALIQMYAS-CKCIYDARKVFDELSLR-V---WNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTL 181 (507)
Q Consensus 107 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~---p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 181 (507)
++.+...|......+.. .|+.+.....|+..... + .+...|...|..-...+++.....+++++.+-....|+..
T Consensus 109 ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 109 IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 55666677666554443 47777777777776654 2 2566777888777788888888888888776333333322
Q ss_pred HHHHH---hC------CChhHHHHHHHHHh--------------------HCCCCCCHHHH--HHHHHHH-------hcc
Q 010575 182 IAGYA---QM------DQPNEAITLFRRMQ--------------------VENVKPDEIAM--LAALSAC-------AQL 223 (507)
Q Consensus 182 i~~~~---~~------~~~~~a~~~~~~m~--------------------~~~~~~~~~~~--~~ll~~~-------~~~ 223 (507)
-..|. +. ...+++.++-.... ..+.+.+..+. +.+-..+ -..
T Consensus 189 f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s 268 (577)
T KOG1258|consen 189 FDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKS 268 (577)
T ss_pred HHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Confidence 22221 11 11222222211111 11111111111 1111111 111
Q ss_pred CCHHHHHHHHHHHHHcC-------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChH
Q 010575 224 GAVELGEWIHNYIEQYG-------LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGR 293 (507)
Q Consensus 224 ~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~ 293 (507)
-........++.-.+.- .+++..+|+..+..-...|+.+.+.-+|+...-|-. ..|-..+.-....|+.+
T Consensus 269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~ 348 (577)
T KOG1258|consen 269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVS 348 (577)
T ss_pred HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchh
Confidence 11112222222222211 123456788888888899999999999998876533 45666666666669988
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHH---HH
Q 010575 294 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAE---KL 369 (507)
Q Consensus 294 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~ 369 (507)
-|..++....+--.+-.+.+-..-..-+-..|+++.|..+++.+.+. . |+. ..-..-+....+.|..+.+. .+
T Consensus 349 ~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l 425 (577)
T KOG1258|consen 349 LANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNEL 425 (577)
T ss_pred HHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHH
Confidence 88888877665433322222211122234568999999999999985 3 543 33333455566888888888 45
Q ss_pred HhhC-CCCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 370 LRRM-PFEANAAIWGSLLA-----ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 370 ~~~~-~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
+... +.+-+..+...+.. .+.-.++.+.|..++.++.+..|++...|..+.+.....+.
T Consensus 426 ~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 426 YSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 4444 22333333333332 24557899999999999999999999999999988877763
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.56 E-value=0.0086 Score=57.37 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC-CCCCHH---------
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP-FEANAA--------- 380 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~--------- 380 (507)
..+...+...+.+...+..|.++|.++-.. .++++.....+++++|..+-++.| ..|+..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 345555555556667778888888877532 346777888899999999988884 333331
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHH
Q 010575 381 --IWGSLLAASNIYGDVELGECALQHL 405 (507)
Q Consensus 381 --~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (507)
-+...-.+|.+.|+..+|.++++++
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 1122223555666666666666665
No 195
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.1 Score=51.43 Aligned_cols=356 Identities=11% Similarity=0.074 Sum_probs=191.1
Q ss_pred HHcCCCchHHHHHHHHHH--------HcCCCCCcccHH-----HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHH
Q 010575 51 LCQTDNPLNAVILYNKIQ--------ASALRPDNYSFP-----FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL 117 (507)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 117 (507)
+.+..++++-..+....+ +-|++.+..-|. .++.-+...+.+..|.++-..+...-.. ...+|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 344455555554444432 235555544444 3455566677777777776665322111 14666677
Q ss_pred HHHHHhcCC---hHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHH
Q 010575 118 IQMYASCKC---IYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEK--------NVISWTTLIAGYA 186 (507)
Q Consensus 118 ~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~ 186 (507)
..-+.+..+ -+-+..+-+++........+|..+.......|+.+-|..+++.=+.. +..-+..-+.-..
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 776666532 22233333333332125566777777777888888888877654321 1122333444455
Q ss_pred hCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010575 187 QMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 266 (507)
Q Consensus 187 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 266 (507)
..|+.+-...++-.+... .+...|...+ .+...|..+|.+..+..-. ..+-+.|-. ++...+..
T Consensus 558 es~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q-~dn~~~~a 621 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQ-DDNHQALA 621 (829)
T ss_pred hcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhc-ccchhhhh
Confidence 556666555555554432 1111111111 1223344444444332100 011112222 22222222
Q ss_pred HHH--hc-----CCCChhHHHHHHHHHHHcCCh---HH-------HHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHH
Q 010575 267 VFE--NM-----KNKSVITWTTMIAGLALHGLG---RE-------ALDMFSRMER-ARVKPNEITFIAILSACCHVGLVE 328 (507)
Q Consensus 267 ~~~--~~-----~~~~~~~~~~l~~~~~~~~~~---~~-------A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~ 328 (507)
.|. .. .+.-..........+.+.... ++ -+.+.+.+.. .|..-...+.+--+..+...|+-.
T Consensus 622 ~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k 701 (829)
T KOG2280|consen 622 SFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK 701 (829)
T ss_pred hhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence 111 10 011111222233334333321 11 1222222221 232333445566666677789999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 329 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
+|.++-.+.+ .||...|..-+.++...+++++-+++-+..+ .+.-|.-+..+|.+.|+.++|..++-+.-.
T Consensus 702 ~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~- 772 (829)
T KOG2280|consen 702 RAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG- 772 (829)
T ss_pred HHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC-
Confidence 9988876664 5788888888999999999999888877763 256688889999999999999888776522
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 409 EPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 409 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
+...+.+|.+.|++.+|.+.--+-
T Consensus 773 -------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 773 -------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred -------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 226778999999999998876444
No 196
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00068 Score=61.31 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 379 AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..++..+..+|.+.+++..|++..+++++.+|+|..++..-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 346677788888888999999999999999999999999999999999999999999988873
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.56 E-value=0.06 Score=48.75 Aligned_cols=273 Identities=16% Similarity=0.158 Sum_probs=171.5
Q ss_pred cCCHHHHHHHHHhcC---CCChhHHHHHH--HHHHhCCChhHHHHHHHHHhHCCCCCCHH--HHHHHHHHHhccCCHHHH
Q 010575 157 VGDLNNARALFELMT---EKNVISWTTLI--AGYAQMDQPNEAITLFRRMQVENVKPDEI--AMLAALSACAQLGAVELG 229 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~---~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a 229 (507)
.|+-..|.++-.+.. ..|....-.++ ++-.-.|+++.|.+-|+.|... |... -...|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 344444544443332 23333333333 2344568888888888888652 2211 122222233566777888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChh--HHHHHHHHHH---HcCChHHHHHHH
Q 010575 230 EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KSVI--TWTTMIAGLA---LHGLGREALDMF 299 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~--~~~~l~~~~~---~~~~~~~A~~~~ 299 (507)
..+-+..-..- +.-.......+...|..|+|+.|+++.+.-.. ++.. .--.|+.+-+ -..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77777665543 33356667788888888999999888876543 3332 1122222211 123455666555
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----C
Q 010575 300 SRMERARVKPNEIT-FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----P 374 (507)
Q Consensus 300 ~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 374 (507)
.+..+ +.||... -..-..++.+.|+..++-.+++.+-+. .|.+..+...+ +.+.|+. +..-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHh
Confidence 55544 4666533 334456788999999999999999854 67766554333 3455543 22222222 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-CCchHHHHHHHHHHhCC
Q 010575 375 FEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL-GRWNESGKIRKVMRDMG 443 (507)
Q Consensus 375 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 443 (507)
.+| +..+...+..+-...|++..|..--+.+....|. ..+|..|+++-... |+-.++..++.+.....
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 344 5556777788888999999999999999999998 77899999988766 99999999998876443
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.55 E-value=0.0004 Score=64.24 Aligned_cols=65 Identities=12% Similarity=-0.018 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN---YAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+...|+.+..+|...|++++|+..|+++++++|++..+ |.+++.+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55677777778888888888888888888888887643 778888888888888888888777653
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0021 Score=46.96 Aligned_cols=81 Identities=12% Similarity=0.013 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCCCchhH
Q 010575 177 SWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPDEIAMLAALSACAQLG--------AVELGEWIHNYIEQYGLNTIVPL 247 (507)
Q Consensus 177 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 247 (507)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-....+++.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566777777999999999999999999 899999999999887653 33456788899999999999999
Q ss_pred HHHHHHHHHh
Q 010575 248 NNALIDMYAK 257 (507)
Q Consensus 248 ~~~l~~~~~~ 257 (507)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.53 E-value=0.00014 Score=44.25 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
.+|..+..+|...|++++|+++++++++..|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999999888864
No 201
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.53 E-value=0.068 Score=48.76 Aligned_cols=108 Identities=10% Similarity=0.074 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 010575 211 IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHG 290 (507)
Q Consensus 211 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (507)
.+.+..+.-+...|+...|.++-.+.. -|+...|-..+.+|+..++|++-.++... +++++.|..++..|...|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCC
Confidence 345555666777888888777765543 57888888999999999999988887654 567788999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 334 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (507)
+..+|..+..+ ++ + ..-+..|.+.|++.+|.+.-
T Consensus 252 ~~~eA~~yI~k-----~~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPK-----IP-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHh-----CC-h----HHHHHHHHHCCCHHHHHHHH
Confidence 99999888776 22 2 34566777888888887653
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.53 E-value=0.00075 Score=59.46 Aligned_cols=59 Identities=10% Similarity=-0.027 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 382 WGSLLAASNIYGDVELGECALQHLIKLEPHN---SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+.-+..+|...|++++|...|+.+++..|++ +.++..++.++...|++++|.++++++.
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444555555555555555555444443 2233334445555555555555555543
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.52 E-value=0.015 Score=46.82 Aligned_cols=126 Identities=12% Similarity=0.044 Sum_probs=63.9
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHH
Q 010575 109 SDVHVVAALIQMYASCKCIYDARKVFDELSLRVW--NVAVWNTMVAGYAKVGDLNNARALFELMTE-----KNVISWTTL 181 (507)
Q Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l 181 (507)
|+..-...|..++.+.|++.+|...|++...-.. |......+.++....++...|...++.+.+ .++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444444455555555555555555555443211 444444444555555555555555555443 123344455
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYI 236 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 236 (507)
.+.+...|.+.+|...|+..... -|+..........+.+.|+.+++..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 66666677777777777766653 344433333334445566555554444333
No 204
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.52 E-value=0.075 Score=49.07 Aligned_cols=372 Identities=10% Similarity=0.093 Sum_probs=211.0
Q ss_pred HHHhccCCC--CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCC
Q 010575 30 YSIFTHKSK--PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGL 107 (507)
Q Consensus 30 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 107 (507)
+++=+.+.. .|+.+|-.||..+...+..++..+++++|.. ..+--+..|..-+.+-...+++..+..+|.+.+....
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 355555554 4788999999999999999999999999986 1222345577677766677899999999999988755
Q ss_pred CCcHHHHHHHHHHHHhcC-----C----hHHHHHHHHhcccCCC-ChhhHHHHHHHHHh---cC------CHHHHHHHHH
Q 010575 108 DSDVHVVAALIQMYASCK-----C----IYDARKVFDELSLRVW-NVAVWNTMVAGYAK---VG------DLNNARALFE 168 (507)
Q Consensus 108 ~~~~~~~~~l~~~~~~~g-----~----~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~---~~------~~~~A~~~~~ 168 (507)
. ...|...+.--.+.+ + +-+|-++.-....-.| +...|+..+..+-. .| +++...+.+.
T Consensus 108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4 555555555333322 1 1222222222111122 23333333222111 11 1122222222
Q ss_pred hcCC-------------------------------------------------------CC---hhH-----------HH
Q 010575 169 LMTE-------------------------------------------------------KN---VIS-----------WT 179 (507)
Q Consensus 169 ~~~~-------------------------------------------------------~~---~~~-----------~~ 179 (507)
++.. .| ..+ |-
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 2221 00 001 11
Q ss_pred HHHHHHHhCC-----C-h-hHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 180 TLIAGYAQMD-----Q-P-NEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 180 ~li~~~~~~~-----~-~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
..|.--...| + . .+.--++++.... +.-....|----.-+...++-+.|.+.... |++..+....-+.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~ls 340 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMFLS 340 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchheeHH
Confidence 1221111111 0 0 1112223333221 122222332222333445555555554432 3222222222344
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---------------------------------CChhHHHHHHHHHHHcCChHHHHHHH
Q 010575 253 DMYAKSGKIGKALQVFENMKN---------------------------------KSVITWTTMIAGLALHGLGREALDMF 299 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (507)
..|.-..+.+.....|+...+ .=..+|...+..-.+..-.+.|..+|
T Consensus 341 e~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F 420 (660)
T COG5107 341 EYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLF 420 (660)
T ss_pred HHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 444444444444444433221 11245677777777888889999999
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCC
Q 010575 300 SRMERAR-VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFE 376 (507)
Q Consensus 300 ~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 376 (507)
-+..+.| +.++...++.++..++ .|++.-|..+|+.=... .+.++..-+..+.-+.+.++-+.|..+|+.. .+.
T Consensus 421 ~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 421 IKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 9999888 5677788888887666 58888999999877653 2333333455677778889999999999965 222
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 377 A--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 377 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
. -..+|..++.--...|+...+..+-+++.+.-|..
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 2 25688888888888999999998888888888873
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.51 E-value=0.017 Score=50.58 Aligned_cols=173 Identities=15% Similarity=0.125 Sum_probs=95.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCh-h---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN--KSV-I---TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH- 323 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~--~~~-~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~- 323 (507)
....+...|++++|.+.|+.+.. |+. . ..-.++.++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445556667777766666654 211 1 1233456667777777777777777664222112222222222221
Q ss_pred -c---------------Cc---HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 010575 324 -V---------------GL---VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS 384 (507)
Q Consensus 324 -~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 384 (507)
. .| ...|+..|+.+++++ |+. .-..+|...+..+.... ..--..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~l-a~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRL-AKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHH-HHHHHH
Confidence 1 11 223445555555432 332 11223332222221000 001113
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+..-|.+.|.+.-|..-++.+++.-|+.+ .++..++.+|.+.|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45568889999999999999998877744 466788899999999999999887664
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.51 E-value=0.11 Score=50.66 Aligned_cols=248 Identities=10% Similarity=0.036 Sum_probs=121.4
Q ss_pred ChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCC--------CcccHHHHHHHHHccCCcHHH
Q 010575 25 FSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQAS-ALRP--------DNYSFPFVLKAVVKLSTIELG 95 (507)
Q Consensus 25 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p--------~~~~~~~l~~~~~~~~~~~~a 95 (507)
.+++|.++.+.- |.+..|..+.......-.++.|...|-+.... |++. +...-..=+. +--|++++|
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 356666666543 44456777777666666666666666655442 2211 0000011111 224567777
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 96 REIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW---NVAVWNTMVAGYAKVGDLNNARALFELMTE 172 (507)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 172 (507)
++++-++-+.+ ..+..+.+.|++-...++++.=....- -...|+.+...+.....|++|.+.|.....
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77765553332 234556666676666666654222211 234566677777777777777776665432
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 173 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 173 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
. ...+.++.+..++++-..+-..+ +-+......+...+.+.|.-++|.+.+-+. + .| ..-+
T Consensus 825 ~-----e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv 885 (1189)
T KOG2041|consen 825 T-----ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAV 885 (1189)
T ss_pred h-----HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHH
Confidence 1 22444455544444444333322 223334444555555555555554443221 1 11 1233
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHH--------------HHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 253 DMYAKSGKIGKALQVFENMKNKSVITW--------------TTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
..+...++|.+|.++-+...-|.+.+. .--|..+.+.|++-.|-+++.+|.+
T Consensus 886 ~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 444555555555555544333222111 0123334556666666666666643
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.034 Score=47.42 Aligned_cols=136 Identities=10% Similarity=0.081 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCchhHHHH
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG-----LNTIVPLNNA 250 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 250 (507)
...+.++..+...|.+.-....+++..+...+.++.....+.+.-.+.|+.+.|...++...+.. .+....+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34456777777888888888888888887666677777788888888899999999888776543 3333444444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEIT 313 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 313 (507)
....|...+++..|...|.++.. .++..-|.-.-+..-.|+...|++.++.|.+. .|...+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 55567778888888888888775 34556666666666678889999999998875 444433
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.42 E-value=0.0086 Score=45.50 Aligned_cols=106 Identities=16% Similarity=0.095 Sum_probs=60.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CchhHHHHHHHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPD--EIAMLAALSACAQLGAVELGEWIHNYIEQYGLN--TIVPLNNALIDMY 255 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 255 (507)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++........ .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566777888888888888877775543 234455566677777777777777766654211 0122222233445
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHH
Q 010575 256 AKSGKIGKALQVFENMKNKSVITWTTMIAG 285 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 285 (507)
...|+.++|...+-....++...|..-|..
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666554443333333333333
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.37 E-value=0.00061 Score=47.03 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=51.0
Q ss_pred HHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 010575 355 DLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 419 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 419 (507)
..|.+.+++++|.++++++ ...| ++..|......+...|++++|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4677888888888888887 4444 555677788888999999999999999999999876554433
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.37 E-value=0.0045 Score=54.60 Aligned_cols=103 Identities=15% Similarity=0.078 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCC-CHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSL 385 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l 385 (507)
..|...+....+.|++++|+..|+.+.+.+.-.+ .+..+..+...|...|++++|...|+.+ |..| ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455444444566888888888888887532111 1346667888888888888888888877 2222 34456666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
+..+...|+.++|...++++++..|++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 77788899999999999999999998653
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.018 Score=49.00 Aligned_cols=124 Identities=10% Similarity=0.054 Sum_probs=59.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--------CCCCCHHHHHHHHHH
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--------PFEANAAIWGSLLAA 388 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~l~~~ 388 (507)
++..+.-.|.+.-....+.++++. .-+.++.....|++.-.+.|+.+.|...|++. +.+.+..........
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 333334444444444444444442 22333444444444444555555555555433 111111222222223
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+.-.+++..|...+.+++..+|.++..-+.-+-++.-.|+..+|++.++.|.+
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555565666666666665555555555555555666666666666543
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.29 E-value=0.041 Score=50.65 Aligned_cols=159 Identities=18% Similarity=0.089 Sum_probs=92.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNK-------SVITWTTMIAGLAL---HGLGREALDMFSRMERARVKPNEITFIAILS 319 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 319 (507)
.++-.|....+++...++.+.+... ....-....-++-+ .|+.++|+.++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777776653 11122233444555 6788888888888655555677777777776
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---hhC-------CCC
Q 010575 320 ACCH---------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQ----EAEKLL---RRM-------PFE 376 (507)
Q Consensus 320 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-------~~~ 376 (507)
.|-. ....++|+..|.+.- .+.|+..+--.++..+...|... +..++- ... ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5531 223666777666554 33454433223333333333311 222222 111 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 377 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.+-..+.+++.++.-.|+.++|.+.++++++..|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 34445567888888899999999999999888776
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.0044 Score=56.05 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=68.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH----HcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCh--hH
Q 010575 213 MLAALSACAQLGAVELGEWIHNYIE----QYGLN-TIVPLNNALIDMYAKSGKIGKALQVFENMK-------NKSV--IT 278 (507)
Q Consensus 213 ~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~--~~ 278 (507)
|..+-+.|.-.|+++.|+..++.-. +.|-. .....+..|.+++.-.|+++.|.+.|+... .+.+ .+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 3444444445566777665554322 12211 223445556667777777777777665432 1222 23
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 279 WTTMIAGLALHGLGREALDMFSRMER----A-RVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
.-.|...|.-..++++|+.++.+-.. . ...-....+.+|..++...|..++|+.+.+...
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44566666666677777776655221 1 112234566677777777777777766655443
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.18 E-value=0.00057 Score=47.91 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCC---CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKL----EPHN---SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+++.+...|...|++++|+..+++++++ ++++ ..++..++.+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888888643 2222 4577889999999999999999998865
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.14 E-value=0.0068 Score=50.29 Aligned_cols=96 Identities=15% Similarity=0.156 Sum_probs=68.9
Q ss_pred HHHHhc--CCCChhHHHHHHHHHHh-----CCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc--------------
Q 010575 165 ALFELM--TEKNVISWTTLIAGYAQ-----MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL-------------- 223 (507)
Q Consensus 165 ~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-------------- 223 (507)
..|+.. ..++-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344443 34566677777766654 466677777778888888888888888888876542
Q ss_pred --CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010575 224 --GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 260 (507)
Q Consensus 224 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 260 (507)
.+-+-|.+++++|...|+-||..++..|++.+.+.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1345678888888888888988888888888866543
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.06 E-value=0.019 Score=44.52 Aligned_cols=87 Identities=21% Similarity=0.156 Sum_probs=58.5
Q ss_pred HHHHhhcCCHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHH
Q 010575 354 IDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN---YAILSNIYAI 425 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 425 (507)
.....+.|++++|.+.|+.+ |..| ....-..++.+|.+.|+++.|...+++.++++|.++.+ +...+-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455677888888877776 3333 34456667888889999999999999999998887653 3333434444
Q ss_pred cCC---------------chHHHHHHHHHH
Q 010575 426 LGR---------------WNESGKIRKVMR 440 (507)
Q Consensus 426 ~g~---------------~~~A~~~~~~~~ 440 (507)
... ..+|..-|+.+.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv 126 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLV 126 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHH
Confidence 433 556666666665
No 217
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.011 Score=53.87 Aligned_cols=94 Identities=18% Similarity=0.099 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
..++..+.-+|.+.+++.+|+...++. . .++|......=..+|...|+++.|+..|++++++.|+|..+...|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345677888899999999999998887 3 34577777778889999999999999999999999999999999988877
Q ss_pred HcCCchHH-HHHHHHHH
Q 010575 425 ILGRWNES-GKIRKVMR 440 (507)
Q Consensus 425 ~~g~~~~A-~~~~~~~~ 440 (507)
+.....+. .++|..|-
T Consensus 337 k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77666554 77888885
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.03 E-value=0.017 Score=49.26 Aligned_cols=57 Identities=14% Similarity=0.012 Sum_probs=28.7
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCC----cccHHHHHHHHHccCCcHHHHHHHHHHHHcCC
Q 010575 49 KALCQTDNPLNAVILYNKIQASALRPD----NYSFPFVLKAVVKLSTIELGREIHCQTVGTGL 107 (507)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 107 (507)
..+...|++.+|...|+.+...- |+ ....-.++.++.+.|+++.|...++..++.-+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~--P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRY--PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 34455566666666666665531 21 12233445555566666666666666655543
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.02 E-value=0.25 Score=44.91 Aligned_cols=275 Identities=16% Similarity=0.114 Sum_probs=125.2
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH--HHHhcCChHHHHHHHHhcccCCCChhh----HHHHHHHHHhcCCHH
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQ--MYASCKCIYDARKVFDELSLRVWNVAV----WNTMVAGYAKVGDLN 161 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~li~~~~~~~~~~ 161 (507)
..|+-..|.++-.+..+. +..|....-.|+. +-.-.|+++.|.+-|+.|... ..+ ...|.-..-+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 344555555554443322 2223332222332 223346666666666666552 222 222222233455666
Q ss_pred HHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC-CCCCHH--HHHHHHHHHh--c-cCCHHHHHHH
Q 010575 162 NARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVEN-VKPDEI--AMLAALSACA--Q-LGAVELGEWI 232 (507)
Q Consensus 162 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~ll~~~~--~-~~~~~~a~~~ 232 (507)
.|...-+..-. | -...+..++...+..|+|+.|+++.+.-+... +.++.. .-..|+.+-. . ..+...|...
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 55555554432 1 22455566666666666666666666544332 223321 1122222211 1 1233444444
Q ss_pred HHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC
Q 010575 233 HNYIEQYGLNTIVPL-NNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER-ARVKPN 310 (507)
Q Consensus 233 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~ 310 (507)
-.+..+. .|+..- --.-..++.+.|+..++-.+++.+-+..+..--..+-.+.+.| +.++.-+++..+ ..++||
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~g--dta~dRlkRa~~L~slk~n 327 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSG--DTALDRLKRAKKLESLKPN 327 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCC--CcHHHHHHHHHHHHhcCcc
Confidence 3333332 233211 1123455666667766666666665422221111222223333 333333333322 113343
Q ss_pred H-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh-cCCHHHHHHHHhhC
Q 010575 311 E-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR-AGYLQEAEKLLRRM 373 (507)
Q Consensus 311 ~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 373 (507)
. .+...+..+....|++..|..--+... ...|....|..|.+.-.. .|+-.++..++-+.
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3 444455566666677766666555554 345666666666555433 36666776666655
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.99 E-value=0.18 Score=42.89 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=25.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHH
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 366 (507)
+..-|.+.|.+..|..-++.+.+.+.-.+. ......++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 444566666777777766666664321111 13334455556666655533
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.95 E-value=0.0013 Score=46.04 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM-------P-FEAN-AAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
+++.+...|...|++++|++.|++. + ..|+ ..++..+...+...|++++|++++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555556655555555544 1 1122 345667777777788888888887777543
No 222
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.95 E-value=0.014 Score=48.52 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=66.3
Q ss_pred HHHHhc--CCCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 010575 266 QVFENM--KNKSVITWTTMIAGLAL-----HGLGREALDMFSRMERARVKPNEITFIAILSACCHV-------------- 324 (507)
Q Consensus 266 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------------- 324 (507)
..|+.. ..++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 34566777777777664 467777778888899999999999999999887642
Q ss_pred --CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC
Q 010575 325 --GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 361 (507)
Q Consensus 325 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (507)
.+.+-|++++++|... |+.||..++..+++.+++.+
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhcccc
Confidence 2234566777777654 77777777777777765554
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.084 Score=46.34 Aligned_cols=104 Identities=17% Similarity=0.079 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC---CHHHHHHHHhhC-CCCC-CHHHH
Q 010575 308 KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG---YLQEAEKLLRRM-PFEA-NAAIW 382 (507)
Q Consensus 308 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~~~~ 382 (507)
+-|...|..|..+|...|+.+.|...|....+ -.++++..+..+..++..+. ...++..+|+++ ...| |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34678888888888888888888888888875 33445666666666655432 356788888887 4455 45566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
..|...+...|++.+|...++.+++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6666788889999999999999988887744
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.77 E-value=0.0063 Score=48.79 Aligned_cols=60 Identities=27% Similarity=0.276 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
....++..+...|++++|...+++++..+|-+...|..++.+|...|+..+|++.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677778899999999999999999999999999999999999999999999999885
No 225
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.64 Score=45.69 Aligned_cols=333 Identities=14% Similarity=0.110 Sum_probs=196.4
Q ss_pred CCCcccHHHHHHHHHccCCcHHHHHHHHHHHHc-CCCC--------cHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 010575 73 RPDNYSFPFVLKAVVKLSTIELGREIHCQTVGT-GLDS--------DVHVVAALIQMYASCKCIYDARKVFDELSLRVWN 143 (507)
Q Consensus 73 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 143 (507)
.|.+..|..+.......-.++.|+..|-+.... |++. +...-.+-+.+ --|++++|.++|-++..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh---
Confidence 478888988888777777777777766544321 2211 11111111222 258999999999988776
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcCCC--C---hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 010575 144 VAVWNTMVAGYAKVGDLNNARALFELMTEK--N---VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALS 218 (507)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 218 (507)
...|..+.+.|++-...++++.-... | ..+|+.+...+.....|++|.+.|..-... ...+.
T Consensus 764 ----DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~e 830 (1189)
T KOG2041|consen 764 ----DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIE 830 (1189)
T ss_pred ----hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHH
Confidence 34577788889999999988875432 1 357899999999999999999988765321 23455
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHH
Q 010575 219 ACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDM 298 (507)
Q Consensus 219 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (507)
++.+..++++-+.+... .+.+....-.+.+++...|.-++|.+.|-+...|.. .+..|...+++.+|.++
T Consensus 831 cly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHH
Confidence 56666565555444332 355566677888999999999999998887776643 34455666667777666
Q ss_pred HHHHHHCCC-----------CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCCChh----HHHHH-HHHH--
Q 010575 299 FSRMERARV-----------KPNEITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEPKIE----QYGCM-IDLL-- 357 (507)
Q Consensus 299 ~~~m~~~g~-----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~----~~~~l-~~~~-- 357 (507)
-++..-..+ -.+..+ .--|..+.+.|..-.|.+++.+|-++- +.++-.. +..++ +.-+
T Consensus 901 aq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~ 979 (1189)
T KOG2041|consen 901 AQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQ 979 (1189)
T ss_pred HHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 544221000 001111 123456677787777777777765431 3333211 11111 1111
Q ss_pred --------hhcCCHHHHHHHHhhCC----------CCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHh---ccCCCCCc
Q 010575 358 --------GRAGYLQEAEKLLRRMP----------FEANAAIWGSLLAA--SNIYGDVELGECALQHLI---KLEPHNSG 414 (507)
Q Consensus 358 --------~~~g~~~~A~~~~~~~~----------~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~---~~~p~~~~ 414 (507)
-+.|..++|..+++..- .-.....|..++-+ ....|..+.|.+.--.+. +.-|+ ..
T Consensus 980 ~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP-~e 1058 (1189)
T KOG2041|consen 980 TIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPP-AE 1058 (1189)
T ss_pred HHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCH-HH
Confidence 13577788887666541 11123445555544 456688888776654442 23344 45
Q ss_pred hHHHHHHHHHHcCCchHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~ 435 (507)
+|..|+-+-+....+-..-+.
T Consensus 1059 iySllALaaca~raFGtCSKA 1079 (1189)
T KOG2041|consen 1059 IYSLLALAACAVRAFGTCSKA 1079 (1189)
T ss_pred HHHHHHHHHhhhhhhhhhHHH
Confidence 666665555444444333333
No 226
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.70 E-value=0.031 Score=43.00 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 305 ARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 305 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
....|+..+..+++.+|+..|++..|.++.+...+.++++.+...|..|+.=.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34668888888888888888888888888888888888777778887777543
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.68 E-value=0.011 Score=54.97 Aligned_cols=63 Identities=11% Similarity=0.013 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANA----AIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
+...++.+..+|...|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566667777777777777777777765 555553 24677777777777777777777777765
No 228
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.64 E-value=0.13 Score=49.83 Aligned_cols=195 Identities=13% Similarity=0.163 Sum_probs=97.2
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHH-----HHHHHHhcCCHHHHHHHHHhcCC-
Q 010575 99 HCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNT-----MVAGYAKVGDLNNARALFELMTE- 172 (507)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-----li~~~~~~~~~~~A~~~~~~~~~- 172 (507)
++++.+.|-.|+... +...++-.|++.+|-++|.+--....-...|+. ...-+...|+.++-..+.++--+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W 699 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW 699 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 455566666566543 344555667777777777665443111111211 11222223333322222221110
Q ss_pred -CChhHHHHHHHHHHhCCChhHHHHHHHH------HhHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 010575 173 -KNVISWTTLIAGYAQMDQPNEAITLFRR------MQVENV---KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN 242 (507)
Q Consensus 173 -~~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (507)
.++.--..-...+...|+.++|..+.-+ +.+-+- ..+..+...+..-+.+...+..|-++|..|-+.
T Consensus 700 Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--- 776 (1081)
T KOG1538|consen 700 ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--- 776 (1081)
T ss_pred hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---
Confidence 0110011233444556666666554321 111111 123344444444555666677777777766543
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh-----------HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVI-----------TWTTMIAGLALHGLGREALDMFSRMERA 305 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-----------~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 305 (507)
..+++.....++|++|.++-+..++ +++. -|...-.+|.+.|+-.+|..+++++...
T Consensus 777 ------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 ------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 3567777788888888888877765 2321 1222334566677777777777776543
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=96.60 E-value=0.048 Score=51.08 Aligned_cols=118 Identities=9% Similarity=0.113 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 292 GREALDMFSRMER-ARVKPNE-ITFIAILSACCHV---------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 292 ~~~A~~~~~~m~~-~g~~p~~-~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
.+.|+.+|.+... ..+.|+. ..|..+..++... .+..+|.++-++..+ --+.|+.....+..+..-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4456666666662 1234433 4455444443321 223334444444443 1123444444455545555
Q ss_pred CCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 361 GYLQEAEKLLRRM-PFEANA-AIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
|+++.|..+|+++ ...||. .+|......+.-.|+.++|.+.++++++++|.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 5566666666655 344432 34444444555566666666666666666665
No 230
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.55 E-value=0.11 Score=49.84 Aligned_cols=158 Identities=10% Similarity=0.018 Sum_probs=83.3
Q ss_pred HHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHH
Q 010575 85 AVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNAR 164 (507)
Q Consensus 85 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 164 (507)
...-.++++.+.++.+.-.-. +..+..-.+.++..+.+.|..+.|+++...-. .-.....+.|+++.|.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~----------~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD----------HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH----------HHHHHHHHCT-HHHHH
T ss_pred HHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH----------HHhHHHHhcCCHHHHH
Confidence 334556666655554311101 01123446667777777777777777654322 2345566677777777
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 010575 165 ALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI 244 (507)
Q Consensus 165 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 244 (507)
++.+... +...|..|.....+.|+++-|.+.|++..+ +..++-.|...|+.+...++.+.....|-
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD--- 404 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence 7665554 555777777777777777777777766543 33444455666666666666666555541
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFEN 270 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 270 (507)
++....++.-.|+.++..+++.+
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23334444455666665555543
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.53 E-value=0.89 Score=44.35 Aligned_cols=158 Identities=17% Similarity=0.064 Sum_probs=95.0
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHcCCCCcH------HHHHHHHHHHHh----cCChHHHHHHHHhcccCCCChhhHHH
Q 010575 80 PFVLKAVVKLSTIELGREIHCQTVGTGLDSDV------HVVAALIQMYAS----CKCIYDARKVFDELSLRVWNVAVWNT 149 (507)
Q Consensus 80 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 149 (507)
..++....=.||-+.+++.+....+.+--..+ -.|+..+..++. ....+.|.++++.+..+.|+...|..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 34555555567778888777776553311111 223333333332 34567788888888888887666655
Q ss_pred H-HHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHH-H
Q 010575 150 M-VAGYAKVGDLNNARALFELMTEK-------NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA-C 220 (507)
Q Consensus 150 l-i~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~ 220 (507)
. .+.+...|++++|++.|+..... ....+--+.-.+.-..+|++|.+.|..+.+.+ .-+..+|.-+..+ +
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 4 45666678888888888865531 12344456666777788888888888887754 2333444433333 3
Q ss_pred hccCCH-------HHHHHHHHHHHH
Q 010575 221 AQLGAV-------ELGEWIHNYIEQ 238 (507)
Q Consensus 221 ~~~~~~-------~~a~~~~~~~~~ 238 (507)
...|+. ++|..++.++..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 445555 666666666543
No 232
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.53 E-value=1.1 Score=45.46 Aligned_cols=53 Identities=17% Similarity=0.013 Sum_probs=25.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHC
Q 010575 151 VAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE 204 (507)
Q Consensus 151 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 204 (507)
+..+.+.+++....+.+..- ..+...-.....+....|+.++|....+.+=..
T Consensus 106 l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 106 VNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred HHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 34444555666555522221 223333344455556666665555555554333
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.48 E-value=0.77 Score=43.09 Aligned_cols=150 Identities=13% Similarity=-0.019 Sum_probs=80.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh-hCCCCChhHH
Q 010575 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKP---NEITFIAILSACCHVGLVELGRRYFNIMKSR-YGIEPKIEQY 350 (507)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~ 350 (507)
...+|..++..+.+.|+++.|...+.++...+... .+.....-+..+-..|+..+|+..++..... .....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44577778888888888888888888877643211 2233333445556678888888888777762 1111111111
Q ss_pred HHHHHHHhhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 351 GCMIDLLGRAGYLQEAEKL-LRRMPFEANAAIWGSLLAASNIY------GDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
..+...+.. ..+..... ........-...+..+..-+... +..+.+...|+.+.+..|.....|..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111100 00000000 00000000112233333333333 7889999999999999999888888888776
Q ss_pred HHc
Q 010575 424 AIL 426 (507)
Q Consensus 424 ~~~ 426 (507)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 654
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.48 E-value=0.22 Score=48.53 Aligned_cols=115 Identities=18% Similarity=0.112 Sum_probs=80.9
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhHHHH-HHHHHhhcCCHHHHHHHHhhCC-C-----CCCHHHHHHHHHHHHHcCCHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEPKIEQYGC-MIDLLGRAGYLQEAEKLLRRMP-F-----EANAAIWGSLLAASNIYGDVE 396 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~-~-----~~~~~~~~~l~~~~~~~g~~~ 396 (507)
..+.+.|.++++.+.++ -|+...|.. -.+.+...|++++|++.|+++- . +.....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45678888888888865 355555443 3455667888999999888651 1 113344555667788889999
Q ss_pred HHHHHHHHHhccCCCCCchHH-HHHHHHHHcCCc-------hHHHHHHHHHHh
Q 010575 397 LGECALQHLIKLEPHNSGNYA-ILSNIYAILGRW-------NESGKIRKVMRD 441 (507)
Q Consensus 397 ~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~ 441 (507)
+|...+.++.+.+.-+..+|. ..+-++...|+. ++|.+++++++.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999999887766555555 345566677888 888888888863
No 235
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.48 E-value=0.93 Score=43.93 Aligned_cols=341 Identities=12% Similarity=0.009 Sum_probs=180.7
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHH
Q 010575 75 DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAG 153 (507)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 153 (507)
+...|..++.---...+.+.+..++..++..- +.--..|......=.+.|..+.+.++|++-....| +...|...+.-
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44455556654444445566677777776542 22333455566666778999999999999887766 67777777655
Q ss_pred HHh-cCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----
Q 010575 154 YAK-VGDLNNARALFELMTE------KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ---- 222 (507)
Q Consensus 154 ~~~-~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---- 222 (507)
++. .|+.+...+.|+.... .....|...|.--...+++.....+|++.++....--...|.........
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 444 6777788888887764 34567788888778888999999999998874211111122211111111
Q ss_pred -cCCHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHH-------HHHHHHcC
Q 010575 223 -LGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTM-------IAGLALHG 290 (507)
Q Consensus 223 -~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l-------~~~~~~~~ 290 (507)
....+++.++-...... ..+. .+ ...+.-....+....+.. ...+.+ -..+-...
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~------------~~-~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~ 269 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITH------------SQ-EPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSE 269 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhccc------------cc-ChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhH
Confidence 12233333322222211 0000 00 011111111111111110 001111 11122222
Q ss_pred ChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCH
Q 010575 291 LGREALDMFSRMERA---RVKP----NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL 363 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~---g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (507)
...+....|+.-++. .++| +..+|...+.--...|+.+.+.-+|++..- .+..-...|-..+.-....|+.
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~ 347 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDV 347 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCch
Confidence 233333333333322 1222 335666666666677777777777777654 2222344555555555555777
Q ss_pred HHHHHHHhhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHH
Q 010575 364 QEAEKLLRRM-----PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESG 433 (507)
Q Consensus 364 ~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 433 (507)
+-|..++.+. +..|......+ ..+...|++..|..+++.+.+--|+...+-..-+....+.|+.+.+.
T Consensus 348 ~~~~~~~~~~~~i~~k~~~~i~L~~a--~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 348 SLANNVLARACKIHVKKTPIIHLLEA--RFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hHHHHHHHhhhhhcCCCCcHHHHHHH--HHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 7777666655 22232222222 22445677888888887776544775555555566666777777766
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.18 Score=44.23 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=82.8
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHH---HHHHHHHcCCHH
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGS---LLAASNIYGDVE 396 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 396 (507)
.....|++..|..+|+..... .+-+...-..++.+|...|+.+.|..++..+|.+-...-+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455678888888888888763 233455666788888899999999999998864444433333 122333333333
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 397 LGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 397 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
+. .-+++-...+|+|...-..++..+...|+.++|.+.+-.+..++
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 22 22334456789889999999999999999999998877765443
No 237
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.46 E-value=0.022 Score=46.40 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=71.2
Q ss_pred HHHhhcCCHHHHHHHHhhC--CCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 355 DLLGRAGYLQEAEKLLRRM--PFEA-----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~--~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+-+.+.|++++|..-|..+ .+++ ....|..=..++.+.+..+.|+.-..++++++|.+..++..-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456778888888777765 1112 23345555567789999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCCC
Q 010575 428 RWNESGKIRKVMRDMGV 444 (507)
Q Consensus 428 ~~~~A~~~~~~~~~~~~ 444 (507)
++++|++=++++.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999975544
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=96.42 E-value=0.21 Score=46.99 Aligned_cols=79 Identities=10% Similarity=0.022 Sum_probs=57.3
Q ss_pred CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 362 YLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 362 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
...+|.++.+++ ...| |+.....+..+....++++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++.
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666555 3333 66666666666677777888888888888888888888888888888888888888888775
Q ss_pred H
Q 010575 440 R 440 (507)
Q Consensus 440 ~ 440 (507)
.
T Consensus 399 l 399 (458)
T PRK11906 399 L 399 (458)
T ss_pred h
Confidence 4
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.42 E-value=0.55 Score=40.69 Aligned_cols=194 Identities=19% Similarity=0.143 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 010575 246 PLNNALIDMYAKSGKIGKALQVFENMKN-----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS- 319 (507)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~- 319 (507)
..+......+...+++..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 3444445555555555555555544331 2223444445555555556666666666555322221 11111222
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCC--CCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC--HHHHHHHHHHHHHcCC
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN--AAIWGSLLAASNIYGD 394 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~ 394 (507)
.+...|+++.+...+.+.... .. ......+......+...++.++|...+... ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455666666666666666321 11 012223333333355566666666666665 22222 4556666666666667
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 395 VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.+.|...+..+....|.....+..+...+...|.++++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777766666445555555555555666777666666543
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.37 E-value=0.14 Score=39.83 Aligned_cols=116 Identities=11% Similarity=0.056 Sum_probs=60.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 010575 282 MIAGLALHGLGREALDMFSRMERARV--KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (507)
-.....+.|++++|.+.|+.+...-. +-....-..++.++.+.+++++|...+++.++.+...|++ -|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence 34445566667777777666665411 1122444556666666677777777666666543333332 23333333332
Q ss_pred cCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 360 AGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
-...+.. +..+ .... ..+....|...|+++++.-|++..
T Consensus 95 ~~~~~~~---~~~~~~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 95 YEQDEGS---LQSFFRSDR-------------DPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHhhhH---Hhhhccccc-------------CcHHHHHHHHHHHHHHHHCcCChh
Confidence 2222111 1111 1111 122356788889999999999653
No 241
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.35 E-value=0.14 Score=40.89 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCCCChhHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS----RYGIEPKIEQY 350 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 350 (507)
....++..+...|++++|..+.+.+.... +.+...|..++.++...|+...|.++|+.+.. ..|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556667778888888888888888753 33667888888888888888888888877643 34777776553
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.31 E-value=0.059 Score=46.66 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=67.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCC-CChhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCC-CHHHHHHHH
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIE-PKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA-NAAIWGSLL 386 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~ 386 (507)
.|+.-+.. .+.|++..|.+.|....+.+.-. -....+..|..++...|++++|..+|..+ |..| -+..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 45677888888888887743111 12344555777888888888888777766 3333 345666677
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
....+.|+.++|...|+++++.-|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77778888888888888888888875543
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.30 E-value=0.0081 Score=33.87 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888886
No 244
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.28 E-value=0.83 Score=42.34 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHh---CCChhHHHHHHHHHhHCCCCCCHHHHHH
Q 010575 146 VWNTMVAGYAKVGDLNNARALFELMTEK-------NVISWTTLIAGYAQ---MDQPNEAITLFRRMQVENVKPDEIAMLA 215 (507)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 215 (507)
+...++-+|-...+++..+++++.+... ....-....-++-+ .|+.++|++++..++.....++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3344555577777777777777777653 11122233445555 7788888888888666656677777776
Q ss_pred HHHHH
Q 010575 216 ALSAC 220 (507)
Q Consensus 216 ll~~~ 220 (507)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66655
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.27 E-value=0.19 Score=45.21 Aligned_cols=122 Identities=9% Similarity=0.026 Sum_probs=56.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHhhC-------CCCCCH-----H
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEANA-----A 380 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~-----~ 380 (507)
+..++...+.++++++.|+.+.+--.... ...++-.|...|.+..++++|.-+..++ +...-. .
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555555666655555543111111 1234555555566666655555444333 111111 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc--C----CCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKL--E----PHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
+...+..++...|+...|.+..+++.++ . |-.......++++|...|+.+.|..-|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1222334555566666666666655332 1 12223344556666666665555544433
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.54 Score=41.37 Aligned_cols=172 Identities=14% Similarity=0.087 Sum_probs=105.6
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC
Q 010575 263 KALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG 342 (507)
Q Consensus 263 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 342 (507)
...+.++....+....-..-.......|++.+|..+|+........ +...-..++.+|...|+.+.|..++..+-.. -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 3444444444432222222334566778888888888887765322 3455566788888889999998888877542 1
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCCchHHHH
Q 010575 343 IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLE--PHNSGNYAIL 419 (507)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 419 (507)
-.........-+..+.+.....+...+-.+....| |...-..+...+...|+.+.|.+.+=.+++.+ -++...-..+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111222233444555554444444444443345 66666778888888999999988887776654 3466778888
Q ss_pred HHHHHHcCCchHHHHHH
Q 010575 420 SNIYAILGRWNESGKIR 436 (507)
Q Consensus 420 ~~~~~~~g~~~~A~~~~ 436 (507)
+.++.-.|..+.+..-+
T Consensus 279 le~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 279 LELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 88888888655544333
No 247
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=1.4 Score=43.82 Aligned_cols=303 Identities=14% Similarity=0.002 Sum_probs=167.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcC---CHHHHHHHHHhcCC--CChhHHHHHHHHHHhCC
Q 010575 116 ALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVG---DLNNARALFELMTE--KNVISWTTLIAGYAQMD 189 (507)
Q Consensus 116 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 189 (507)
.+++-+...+.+..|+++-..+..... ....|......+.+.. +.+-+..+-+++.. ....+|..+.......|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 345566667777777777776655411 2344555555555542 23334444444444 34456777777777778
Q ss_pred ChhHHHHHHHHHhHCCCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 010575 190 QPNEAITLFRRMQVENVK----PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 265 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 265 (507)
+.+-|..+++.=...+.. .+-.-+...+.-+...|+.+....++-++.+.- ...+.+....+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---------~~s~l~~~l~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---------NRSSLFMTLRNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---------HHHHHHHHHHhchhhh
Confidence 887777766543222100 111123344444555566665555555544321 0111111223344455
Q ss_pred HHHHhcCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHH------HHCCCCCCHHHHHHHHHHHhccCc----------HH
Q 010575 266 QVFENMKNK-SVITWTTMIAGLALHGLGREALDMFSRM------ERARVKPNEITFIAILSACCHVGL----------VE 328 (507)
Q Consensus 266 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m------~~~g~~p~~~~~~~l~~~~~~~g~----------~~ 328 (507)
.+|....+. |..+ +..+.+.++..++...|..- ...|..|+.. ....++.+... ..
T Consensus 593 ~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHH
Confidence 555544331 2111 11122223323332222110 0123333332 23334443322 23
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 329 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
+-+.+.+.+..+++..-.-.+.+--+..+...|+..+|.++-.+.++ ||-..|..-+.++...+++++-+++-+..
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-pdKr~~wLk~~aLa~~~kweeLekfAksk--- 741 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-PDKRLWWLKLTALADIKKWEELEKFAKSK--- 741 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-cchhhHHHHHHHHHhhhhHHHHHHHHhcc---
Confidence 33445555655555544445555666777889999999999999974 78888888888999999988766655443
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 409 EPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 409 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+ |-.|.-...+|.+.|+.+||.+++-++.
T Consensus 742 ks--PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 742 KS--PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred CC--CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 22 5568888899999999999999998875
No 248
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.26 E-value=0.35 Score=36.75 Aligned_cols=140 Identities=14% Similarity=0.150 Sum_probs=84.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHH
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (507)
.-.|..++..++..+...+ .+..-++.+|--....-+-+-..+.++.+-+-+ |. ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcchHHH
Confidence 4457777788888777653 244555555554445555555666666654432 22 123444444
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 367 EKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
...+-.++ .+....+..+......|+-+.-.+++..+.+.+..+|.++..++.+|.+.|+..++.+++++.-+.|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44443332 344556667778888999999999999887665556889999999999999999999999999888874
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.25 E-value=0.013 Score=32.98 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888864
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.21 E-value=0.72 Score=39.94 Aligned_cols=200 Identities=17% Similarity=0.075 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--Ch-hHHHHHHH-
Q 010575 210 EIAMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--SV-ITWTTMIA- 284 (507)
Q Consensus 210 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~l~~- 284 (507)
...+......+...+.+..+...+...... ........+......+...+++..+...+...... +. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555566666666666665555542 22344445555556666666677777777766542 11 22333333
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcC
Q 010575 285 GLALHGLGREALDMFSRMERARV--KPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAG 361 (507)
Q Consensus 285 ~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 361 (507)
.+...|+++.|...+.+...... ......+......+...++.+.+...+...... .+. ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 67888999999999988855221 112334444444466788999999999988863 233 4677788888888899
Q ss_pred CHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 362 YLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 362 ~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
++++|...+... ...|+ ...+..+...+...++.+.+...+.+.....|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999998887 44444 445555555666777899999999999998887
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.20 E-value=0.53 Score=40.58 Aligned_cols=177 Identities=14% Similarity=0.028 Sum_probs=100.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcC--CCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASA--LRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMY 121 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (507)
|+. ...-.+.|++++|.+.|+.+...- -+-...+...++-++.+.++++.|....++..+.-+......|..-|.++
T Consensus 38 Y~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 38 YNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 443 444577899999999999988641 11133445556677789999999999999988876654445566666665
Q ss_pred Hhc-------CChH---HHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH-H-HHHHHHHHhCC
Q 010575 122 ASC-------KCIY---DARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVIS-W-TTLIAGYAQMD 189 (507)
Q Consensus 122 ~~~-------g~~~---~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~li~~~~~~~ 189 (507)
+.. .|.. .|..-|+++..+.||..- ...|..-...+ .|... + -.+.+-|.+.|
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-------------a~dA~~~i~~~--~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY-------------APDAKARIVKL--NDALAGHEMAIARYYLKRG 181 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc-------------hhhHHHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence 532 1111 233333333333442210 00111100000 01111 1 23556788888
Q ss_pred ChhHHHHHHHHHhHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010575 190 QPNEAITLFRRMQVENVKPD---EIAMLAALSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 237 (507)
.+..|..-++.|++. .+-+ ...+..+..+|...|-.++|...-.-+.
T Consensus 182 ~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 182 AYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred ChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 888888888888876 2222 2344455666777777777766554443
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.066 Score=47.43 Aligned_cols=158 Identities=12% Similarity=-0.031 Sum_probs=109.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHH----HHHHHHhhcCC
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG----CMIDLLGRAGY 362 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 362 (507)
.-.|+..+|-..++++.+. .+.|...+...=.+|...|+...-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4578888888888888876 455777777777888899999988888888876 3355554333 33445567899
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCCchHHHHHH
Q 010575 363 LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH----NSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 363 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
+++|++.-++. .+.| |..........+.-.|++.++.+...+-...=.. -..-|-+.+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998887 5444 4455566666777888999988887765321111 1123445566777788999999999
Q ss_pred HHHHhCCCccC
Q 010575 437 KVMRDMGVKKM 447 (507)
Q Consensus 437 ~~~~~~~~~~~ 447 (507)
+.-.-....++
T Consensus 271 D~ei~k~l~k~ 281 (491)
T KOG2610|consen 271 DREIWKRLEKD 281 (491)
T ss_pred HHHHHHHhhcc
Confidence 77653334433
No 253
>PRK15331 chaperone protein SicA; Provisional
Probab=96.12 E-value=0.19 Score=40.19 Aligned_cols=83 Identities=8% Similarity=-0.083 Sum_probs=32.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHH
Q 010575 288 LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 367 (507)
Q Consensus 288 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 367 (507)
..|++++|..+|+-+.-.+. -+..-+..|..++-..+++++|+..|.....- + .-|+..+-....+|...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34444444444444433211 12223333444444444444444444443321 1 112222223344444444444444
Q ss_pred HHHhhC
Q 010575 368 KLLRRM 373 (507)
Q Consensus 368 ~~~~~~ 373 (507)
..|...
T Consensus 126 ~~f~~a 131 (165)
T PRK15331 126 QCFELV 131 (165)
T ss_pred HHHHHH
Confidence 444433
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.04 E-value=0.54 Score=44.53 Aligned_cols=103 Identities=12% Similarity=0.143 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC-C-CCCH--HHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP-F-EANA--AIWGSLLA 387 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~--~~~~~l~~ 387 (507)
.+-..+..++-+.|+.++|++.++++.+.+...........|+.++...+.+.++..++.+.. + -|.. ..|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 334457777778899999999999998753222234567788999999999999999988873 1 2333 34555443
Q ss_pred HHHHcCC---------------HHHHHHHHHHHhccCCCCCc
Q 010575 388 ASNIYGD---------------VELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 388 ~~~~~g~---------------~~~A~~~~~~~~~~~p~~~~ 414 (507)
.....++ ...|.+.+.++++.+|.-+.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 3333333 23467888999888887553
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.03 E-value=0.56 Score=37.09 Aligned_cols=86 Identities=6% Similarity=-0.032 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 44 YNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 44 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
...++..+...+.+......++.+...+ ..++..++.++..+++.+ .....+.++. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 4455556655566666666666665554 244555666666665442 2222222221 1122223334555555
Q ss_pred cCChHHHHHHHHhc
Q 010575 124 CKCIYDARKVFDEL 137 (507)
Q Consensus 124 ~g~~~~A~~~~~~~ 137 (507)
.+.++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555544
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=2.1 Score=43.24 Aligned_cols=174 Identities=13% Similarity=0.031 Sum_probs=92.5
Q ss_pred HHHHHccCChhHHHHHhccCCCCCcc---cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcH
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSKPDVY---LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIE 93 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 93 (507)
+..+.+...++-|..+.+.-.-+... .......-+.+.|++++|..-|-+-... +.| ..++.-+.......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIK 414 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHH
Confidence 44444555555555555443221111 1222223445667777777766655431 222 23455555555555
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 010575 94 LGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEK 173 (507)
Q Consensus 94 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 173 (507)
.-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..... .-..-....+..+.+.+-.++|..+-.+...
T Consensus 415 nLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g-~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~- 491 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKG-EWFFDVETALEILRKSNYLDEAELLATKFKK- 491 (933)
T ss_pred HHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCc-ceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-
Confidence 556667777777765 3444466778888888887777777666521 1111133445555555555555555444433
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHh
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQ 202 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 202 (507)
...... -.+-..+++++|++.+..+.
T Consensus 492 he~vl~---ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 492 HEWVLD---ILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred CHHHHH---HHHHHhcCHHHHHHHHhcCC
Confidence 222222 23345677888888877663
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.90 E-value=0.65 Score=36.74 Aligned_cols=126 Identities=10% Similarity=0.026 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 010575 279 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 358 (507)
Q Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (507)
...++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++. ..+......++..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3445666666677777777777777665 346667777777776543 3344444432 112222334666677
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 359 RAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY-GDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
+.+.++++.-++.+++. +...+..+... ++.+.|.+++++ ++++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77777777777777752 22223333333 677777777765 234556666665543
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=0.083 Score=45.78 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC----C---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHH
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM----P---FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN---SGNYAI 418 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~ 418 (507)
.|+.-++. .+.|++.+|...|... | ..||. +.=|..++...|+++.|..+|..+.+-.|.+ |..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 56665554 4778899999999877 2 23333 3346788999999999999999998877665 567889
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhC
Q 010575 419 LSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 419 l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|+.+..+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999743
No 259
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.82 E-value=0.13 Score=39.53 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH--------------HhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMK--------------SRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---- 373 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 373 (507)
.++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555555555555555555544332 11134455556666666666666666666655544
Q ss_pred CCCCCHHHHHHHHH
Q 010575 374 PFEANAAIWGSLLA 387 (507)
Q Consensus 374 ~~~~~~~~~~~l~~ 387 (507)
++.-+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33334555555554
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.33 Score=43.21 Aligned_cols=109 Identities=6% Similarity=-0.036 Sum_probs=45.1
Q ss_pred cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC-CCChhhHH----HHHHHHHhcCCHHHH
Q 010575 89 LSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR-VWNVAVWN----TMVAGYAKVGDLNNA 163 (507)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~----~li~~~~~~~~~~~A 163 (507)
.|++.+|-..++++++.- +-|...++.-=++|.-.|+.+.-...++++... .|+...|. ...-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 344444444444444432 223334444444444444444444444444433 33332221 112233334555555
Q ss_pred HHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHH
Q 010575 164 RALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLF 198 (507)
Q Consensus 164 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 198 (507)
++.-++..+- |..+..++...+-..|++.++.++.
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 5544444432 2223333444444445555544443
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.78 E-value=0.022 Score=34.43 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=26.6
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 413 SGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 413 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|.++..++.+|.+.|++++|++++++..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357889999999999999999999999743
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.62 E-value=0.16 Score=38.43 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=57.1
Q ss_pred HHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHHcCCc
Q 010575 356 LLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN----SGNYAILSNIYAILGRW 429 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 429 (507)
++...|+++.|++.|.+. . ...++..||.=..++.-.|+.++|..-+++++++.-+. ..+|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 445667777777777665 2 22355667777777777777777777777777654321 12455666677777777
Q ss_pred hHHHHHHHHHHhCCC
Q 010575 430 NESGKIRKVMRDMGV 444 (507)
Q Consensus 430 ~~A~~~~~~~~~~~~ 444 (507)
+.|..=|+..-+-|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777777776654443
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.58 E-value=3.8 Score=43.30 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHH----HhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hH--H
Q 010575 207 KPDEIAMLAALSA----CAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV-IT--W 279 (507)
Q Consensus 207 ~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~ 279 (507)
.|+...+..+..+ +...+.+++|.-.|+..-+. ..-+.+|..+|+|.+|..+-.++...-. .. -
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence 4566555544444 44556666666665544322 2345667777888888877777665322 22 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNI 336 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (507)
..|+.-+...+++-+|-++..+.... |. ..+..+++...+++|.++...
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 55677777888888887777765542 21 123334455556666555433
No 264
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=3.2 Score=41.70 Aligned_cols=30 Identities=30% Similarity=0.497 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKNKSV 276 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 276 (507)
....|+..|...++++.|..++-...+.++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 344588999999999999999988877544
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.46 E-value=0.077 Score=45.85 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=76.1
Q ss_pred HHHHhccCC--CCCcccHHHHHHHHHcC-----CCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccC-----------
Q 010575 29 AYSIFTHKS--KPDVYLYNTTIKALCQT-----DNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLS----------- 90 (507)
Q Consensus 29 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 90 (507)
.++.|...+ ++|-.+|-+.+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 46777888888877543 566777788899999999999999999998875533
Q ss_pred -----CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 010575 91 -----TIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC 126 (507)
Q Consensus 91 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (507)
+-+-+..++++|...|+.||..+-..|++++.+.+.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223567889999999999999999999999988775
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.40 E-value=0.77 Score=34.97 Aligned_cols=62 Identities=8% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 241 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 241 (507)
+.-+......|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555566666666666555442 244555555566666666666666666665555553
No 267
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.35 E-value=2.5 Score=39.63 Aligned_cols=375 Identities=13% Similarity=0.106 Sum_probs=206.1
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhccc
Q 010575 60 AVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSL 139 (507)
Q Consensus 60 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 139 (507)
-+++=+++++ -+.|..+|-.|+.-+...+..++..+++++|..- ++--..+|..-+.+-....++.....+|.+...
T Consensus 28 ~lrLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 28 ELRLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 3455555554 3457788999999999999999999999999653 233456677777777778899999999999888
Q ss_pred CCCChhhHHHHHHHHHhcCCHH------HHHHHHHhcC-----C-CChhHHHHHHHH---HHhCCCh------hHHHHHH
Q 010575 140 RVWNVAVWNTMVAGYAKVGDLN------NARALFELMT-----E-KNVISWTTLIAG---YAQMDQP------NEAITLF 198 (507)
Q Consensus 140 ~~p~~~~~~~li~~~~~~~~~~------~A~~~~~~~~-----~-~~~~~~~~li~~---~~~~~~~------~~a~~~~ 198 (507)
...+...|...+..--+.++.- ...+.|+... + .....|+..+.. .-..|.+ +...+.|
T Consensus 105 k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 105 KSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred hhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 7667888888777665544221 1122222222 1 233445544433 2233443 4455667
Q ss_pred HHHhHCCCCCCHHHHH------HHHHHHhc---cC----CHHHHHHHHHHHHHc--CCC----CchhHHH----------
Q 010575 199 RRMQVENVKPDEIAML------AALSACAQ---LG----AVELGEWIHNYIEQY--GLN----TIVPLNN---------- 249 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~~------~ll~~~~~---~~----~~~~a~~~~~~~~~~--~~~----~~~~~~~---------- 249 (507)
.+|+...+..-...|. .-++.... .| -+-.|.+.++++... |.. .+..+++
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 7776532211111111 11111000 01 123344444444321 111 0111111
Q ss_pred ----------------------------HH--------------HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010575 250 ----------------------------AL--------------IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLA 287 (507)
Q Consensus 250 ----------------------------~l--------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 287 (507)
.. -..+...++-+.|......-.+-.+..--.+...|.
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ye 344 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYE 344 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHh
Confidence 11 111122344444444444332211110000111111
Q ss_pred HcCChHHHHHHHHHHHH--------------CCC---------------CCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 288 LHGLGREALDMFSRMER--------------ARV---------------KPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 288 ~~~~~~~A~~~~~~m~~--------------~g~---------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
...+-+.....|+...+ .+. .--...|...+.+-.+...++.|..+|-++.
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 11111111111111100 011 1112345667777777788999999999998
Q ss_pred HhhC-CCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhccCCC--CC
Q 010575 339 SRYG-IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIW-GSLLAASNIYGDVELGECALQHLIKLEPH--NS 413 (507)
Q Consensus 339 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~ 413 (507)
+. + +.+++..+++++.-+ ..|+..-|..+|+.- ..-||...| .-.+.-+...++-+.|..+|+..++.-.. -.
T Consensus 425 k~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k 502 (660)
T COG5107 425 KE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLK 502 (660)
T ss_pred cc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhh
Confidence 77 5 667888888888755 568889999999854 334555544 55666678889999999999977542222 24
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
.+|..+++--..-|+...+..+=+.+
T Consensus 503 ~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 503 RIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 57888887777888887777665555
No 268
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.18 E-value=1 Score=43.36 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=85.7
Q ss_pred HHHHhCCChhHHHHHHH-HHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 183 AGYAQMDQPNEAITLFR-RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 183 ~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
....-.++++.+.++.+ .-.-..++ ......++.-+.+.|..+.|..+... . ..-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCH
Confidence 34455667777666554 11111121 33456666667777777777666432 2 1334556677777
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 010575 262 GKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY 341 (507)
Q Consensus 262 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 341 (507)
+.|.++.++.. +...|..|.......|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+....+
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 77777765554 555777777777777887777777775432 334555556667766666666555543
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 010575 342 GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP 374 (507)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (507)
| -++....++.-.|+.++..+++.+.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 12333444555667777666666554
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.14 E-value=1.9 Score=37.25 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=44.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+..-|.+.|.+.-|..-++.+++.-|+.+ .++..+..+|.+.|..++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 44567889999999999999988766643 456677889999999999998877664
No 270
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=1.9 Score=43.58 Aligned_cols=177 Identities=12% Similarity=0.078 Sum_probs=91.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 010575 213 MLAALSACAQLGAVELGEWIHNYIEQYGLNTI--VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHG 290 (507)
Q Consensus 213 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (507)
...-+..+.+...++.|..+.+ ..+..++ ........+-+.+.|++++|...|-+...--.. ..++.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHH
Confidence 3445555566666666655533 2222222 122333344445667777776666544321111 12344445555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCC-CChhHHHHHHHHHhhcCCHHHHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIE-PKIEQYGCMIDLLGRAGYLQEAEKL 369 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 369 (507)
+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..-+ |.. -|. ...+..+.+.+-.++|..+
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~~fd~---e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEWFFDV---ETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC--cceeeeH---HHHHHHHHHhChHHHHHHH
Confidence 555666666667666654 333345567777777777766655544431 211 122 2345555566666666666
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010575 370 LRRMPFEANAAIWGSLLAASNIYGDVELGECALQHL 405 (507)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (507)
-.+.+. +......+ +...+++++|.++++.+
T Consensus 486 A~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 655532 23223322 34567777777776654
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.92 E-value=1.1 Score=40.51 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=18.7
Q ss_pred hcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhCCChhHHHH
Q 010575 156 KVGDLNNARALFELMTEK------NVISWTTLIAGYAQMDQPNEAIT 196 (507)
Q Consensus 156 ~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~ 196 (507)
...+.++|+..+.+...+ --.++..+..+....|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344555555555443321 11234444455555555555443
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.91 E-value=1.7 Score=35.26 Aligned_cols=31 Identities=0% Similarity=0.163 Sum_probs=17.4
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHccCCcHH
Q 010575 64 YNKIQASALRPDNYSFPFVLKAVVKLSTIEL 94 (507)
Q Consensus 64 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 94 (507)
+..+.+.+++|+...+..+++.+.+.|.+..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334445566666666666666666665443
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.91 E-value=0.099 Score=39.47 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=51.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..+....|+.+.|++.|.+++.+-|..+++|++-+.++.-+|+.++|++=+++..+
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999998888753
No 274
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.76 E-value=0.37 Score=41.88 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=72.4
Q ss_pred HHHHhcC--CCChhHHHHHHHHHHh-----CCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC-------------
Q 010575 165 ALFELMT--EKNVISWTTLIAGYAQ-----MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG------------- 224 (507)
Q Consensus 165 ~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~------------- 224 (507)
+.|.... ++|-.+|-..+..+.. .+.++-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3344443 3555666666655543 3556666677778888888888888888887765432
Q ss_pred ---CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC
Q 010575 225 ---AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI-GKALQVFENMK 272 (507)
Q Consensus 225 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~ 272 (507)
+-+-++.++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2245688999999999999999999999998876643 33334433333
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.76 E-value=0.059 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
+|..+...|...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777777777777777777777664
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.59 E-value=0.069 Score=30.51 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998843
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.58 E-value=3.4 Score=37.26 Aligned_cols=159 Identities=13% Similarity=0.083 Sum_probs=79.2
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCcccHHHHHH-------HHHccC-CcHHHHHHHHHHHHc----C----CCCc-----
Q 010575 52 CQTDNPLNAVILYNKIQASALRPDNYSFPFVLK-------AVVKLS-TIELGREIHCQTVGT----G----LDSD----- 110 (507)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~-------~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 110 (507)
.+.|+.+.|...+.+........++.....|.+ .....+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 355666777766666654321122222222222 222334 666666655555433 1 1222
Q ss_pred HHHHHHHHHHHHhcCChH---HHHHHHHhcccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHH
Q 010575 111 VHVVAALIQMYASCKCIY---DARKVFDELSLRVWN-VAVWNTMVAGYAKVGDLNNARALFELMTEK---NVISWTTLIA 183 (507)
Q Consensus 111 ~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~ 183 (507)
..+...++.+|...+..+ +|..+++.+....|+ +..+..-+..+.+.++.+.+.+.+.+|... ....+..++.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 245566677777766644 455566666555554 444545566666677777777777776642 2233444443
Q ss_pred HHH--hCCChhHHHHHHHHHhHCCCCCCH
Q 010575 184 GYA--QMDQPNEAITLFRRMQVENVKPDE 210 (507)
Q Consensus 184 ~~~--~~~~~~~a~~~~~~m~~~~~~~~~ 210 (507)
.+. .......|...+..+....+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 331 112234455555555444344433
No 278
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.50 E-value=12 Score=43.16 Aligned_cols=312 Identities=9% Similarity=0.032 Sum_probs=173.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhccc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCC
Q 010575 116 ALIQMYASCKCIYDARKVFDELSL----RVWNVAVWNTMVAGYAKVGDLNNARALFEL-MTEKNVISWTTLIAGYAQMDQ 190 (507)
Q Consensus 116 ~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~ 190 (507)
.+..+-.+++.+..|...+++-.. .......+-.+...|...+++|....+... ...++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 455566778889999999988311 111222344444588888888887777763 333332 234555677899
Q ss_pred hhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHH-HHHHHHHhcCCHHHHHHHHH
Q 010575 191 PNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNN-ALIDMYAKSGKIGKALQVFE 269 (507)
Q Consensus 191 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~ 269 (507)
++.|...|+.+.+.+ ++...+++-++......|.++...-..+-..... .+....++ .=+.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998864 3336677777777777777777766544433322 22232332 22445577788877777665
Q ss_pred hcCCCChhHHHHH--HHHHHHcCChH--HHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHhccCcHHHHHHHHHH
Q 010575 270 NMKNKSVITWTTM--IAGLALHGLGR--EALDMFSRMERARVKP--------N-EITFIAILSACCHVGLVELGRRYFNI 336 (507)
Q Consensus 270 ~~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~g~~p--------~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (507)
..+..+|... +..+.+..+-+ .-.+..+.+.+.-+.| + ...|..++..+.-. +.+.-.+.+.
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~- 1617 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK- 1617 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh-
Confidence 4555555554 22222222111 1112233222211111 0 12233333322211 1111111111
Q ss_pred hHHhhCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHhhC------C---CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010575 337 MKSRYGIEPK------IEQYGCMIDLLGRAGYLQEAEKLLRRM------P---FEANAAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 337 ~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~------~---~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
+..++ ..-|..-+..-....+..+-+--+++. . ...-..+|..........|.++.|...
T Consensus 1618 -----~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1618 -----KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred -----ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 22222 122222221111111122222222221 1 112356888999999999999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 402 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
+-.+.+..+ +.++.-.+..+++.|+-..|+.++++..+...
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 988877663 46888999999999999999999998875444
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=0.81 Score=36.73 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=61.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChh-HHHH--HHHHHhhcCC
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEI-TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE-QYGC--MIDLLGRAGY 362 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~g~ 362 (507)
++.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.. .-.|-+. -... -.-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45566666666666666655432221 1112223345666677777777766543 1112111 1111 1223456677
Q ss_pred HHHHHHHHhhCC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010575 363 LQEAEKLLRRMP--FEA-NAAIWGSLLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 363 ~~~A~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
+++...-.+.+. ..| ....-..|.-+-.+.|++.+|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777766666662 222 122234455556677777777777777654
No 280
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.35 E-value=0.69 Score=37.09 Aligned_cols=131 Identities=10% Similarity=0.053 Sum_probs=78.4
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCccc-HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHH-HHHHH-
Q 010575 41 VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYS-FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVH-VVAAL- 117 (507)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l- 117 (507)
...|..-+. +.+.+..++|+..|..+.+.|...-+.. -..........|+...|...|+++-+....|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444444 3566777888888888877654321111 1111223457778888888888876655444332 11111
Q ss_pred -HHHHHhcCChHHHHHHHHhcccC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 118 -IQMYASCKCIYDARKVFDELSLR-VW-NVAVWNTMVAGYAKVGDLNNARALFELMTE 172 (507)
Q Consensus 118 -~~~~~~~g~~~~A~~~~~~~~~~-~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 172 (507)
.-.+...|.+++...-.+-+... .| ....-..|.-+-.+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 22355678888877777776554 23 344455677777788888888888887764
No 281
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.34 E-value=3.8 Score=36.92 Aligned_cols=61 Identities=10% Similarity=-0.062 Sum_probs=29.2
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 212 AMLAALSACAQLGAVE---LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN 273 (507)
Q Consensus 212 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 273 (507)
++..++.++...+..+ +|..+++.+.+.. +-.+.++-.-+..+.+.++.+.+.+.+.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 4445555565555443 3344444443222 22233333344555555666666666666554
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.21 E-value=0.082 Score=30.18 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
+|..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888999999999888654
No 283
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.20 E-value=2.9 Score=35.07 Aligned_cols=162 Identities=15% Similarity=0.082 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 276 VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|. .-++.-.|++..|.+-+...-......|-...|-.+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 35788888888888888888888888877533222222222 22344568888887766666543222333333333322
Q ss_pred HHhhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHHcC
Q 010575 356 LLGRAGYLQEAEKL-LRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-------SGNYAILSNIYAILG 427 (507)
Q Consensus 356 ~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 427 (507)
+.-++.+|..- .++.. ..+..-|...+..+.-..-.+ +.+++++.....++ ..+|.-|+.-+...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 33456666654 34442 234444544443332111111 23334443332232 346778888888999
Q ss_pred CchHHHHHHHHHHhCCC
Q 010575 428 RWNESGKIRKVMRDMGV 444 (507)
Q Consensus 428 ~~~~A~~~~~~~~~~~~ 444 (507)
+.++|..+|+-....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999988775554
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.17 E-value=1.3 Score=41.99 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPH--NSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKM 447 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 447 (507)
..+..++.+.|+.++|++.++.+++..|. +..+...|+.++...+.+.++..++.+-.+....+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 44555666677777777777777665554 344666777777777777777777766654433333
No 285
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=3.3 Score=35.26 Aligned_cols=61 Identities=8% Similarity=0.014 Sum_probs=35.1
Q ss_pred HHHHHhhc-CCHHHHHHHHhhC-----CCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 353 MIDLLGRA-GYLQEAEKLLRRM-----PFEANAAIWGSLLA---ASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 353 l~~~~~~~-g~~~~A~~~~~~~-----~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
+...|... .++++|+..|+.. +.+.+...-..++. --...+++.+|+.+|+++....-+++
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 44444443 5666777776665 11222222233333 23577899999999999866554443
No 286
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.94 E-value=0.11 Score=46.18 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=79.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYG 393 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g 393 (507)
-...|.++|.+++|+.+|..... +.| ++.++..-..+|.+..++..|..-...+ .. +.-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35568899999999999998874 455 8888888889999999999888766655 11 112234444445555678
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
+..+|.+-++.++++.|++...-- .+.+.....|+.-+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK----~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKK----SLARINSLRERKIAT 218 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHH----HHHHhcchHhhhHHh
Confidence 899999999999999999654433 334444444444333
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.80 E-value=0.53 Score=36.78 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=30.2
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 391 IYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
..++.+++..++..+.-+.|+.+..-..-++.+...|+|++|+++++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35555555555555555555555555555555556666666666665554433
No 288
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.76 E-value=0.22 Score=44.39 Aligned_cols=94 Identities=16% Similarity=0.060 Sum_probs=65.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 282 MIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
-..-|.++|.+++|+..|...... .| |++++..-..+|.+...+..|+.-...+..- -..-...|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 467799999999999999988775 55 8899999999999999999888777766632 011123344444444445
Q ss_pred CCHHHHHHHHhhC-CCCCCH
Q 010575 361 GYLQEAEKLLRRM-PFEANA 379 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~~~ 379 (507)
|...+|.+-++.. ...|+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc
Confidence 6666666666655 556663
No 289
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.68 E-value=0.98 Score=34.57 Aligned_cols=64 Identities=19% Similarity=0.063 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhc-cCCCC-CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 377 ANAAIWGSLLAASNIYG---DVELGECALQHLIK-LEPHN-SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++..+-..+.+++.+.. +..+.+.+++...+ -.|.. .....-|+-.+.+.|+++.++++.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444555554433 34455666666654 33332 2233344556666666666666666665
No 290
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.58 E-value=12 Score=39.93 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 010575 252 IDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGR 331 (507)
Q Consensus 252 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 331 (507)
++.--+.|-+.+|..++..=.+.-...|.+...-+.....+++|.-.|+..-+. ...+.+|...|+|.+|+
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHH
Confidence 333344445555554443322222233333344444445555555444432110 12344555556666666
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 332 RYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
.+..++.. +..--..+-..|+..+...++.-+|-++..+.
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 55554432 11111112234555555566666665555555
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.57 E-value=6.4 Score=36.85 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 377 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEP----HNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
....+|..++..+.+.|.++.|...+.++.+.++ ..+.+...-+..+...|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556888899999999999999999999977552 2466777889999999999999999988875
No 292
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=93.45 E-value=0.084 Score=39.94 Aligned_cols=43 Identities=40% Similarity=0.623 Sum_probs=33.3
Q ss_pred ceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCccccccc
Q 010575 449 GCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHLQNEFSGVLESD 503 (507)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 503 (507)
|++|+.. +.|.+++.+||+. ++...+...||.|+...+.|..+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~ 44 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVD 44 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCch
Confidence 6788666 9999999999988 44456677788888888877543
No 293
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.43 E-value=0.41 Score=30.13 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCc
Q 010575 415 NYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEH 491 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 491 (507)
.+..++-++.+.|++++|.++.+.+.+ .+|++.....+...+.+.+++-|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 355678899999999999999999973 477888888888888888888763
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.35 E-value=0.76 Score=36.63 Aligned_cols=71 Identities=21% Similarity=0.085 Sum_probs=41.4
Q ss_pred hhcCCHHHHHHHHhhC-CCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 358 GRAGYLQEAEKLLRRM-PFEANAAIWGS-LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
.+.++.+++..+++.+ -.+|....... -...+...|++.+|.++++.+.+-.|..+..-..++.++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4556777777777666 33443333222 22235667777777777777766666666555556555555554
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.28 E-value=0.48 Score=41.89 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.++..++..+...|+.+.+...+++.+..+|-+...|..+..+|.+.|+...|+..|+.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3456666777777777888888888888888777778888888888888888888777775
No 296
>PRK09687 putative lyase; Provisional
Probab=93.19 E-value=6.2 Score=35.52 Aligned_cols=238 Identities=12% Similarity=0.004 Sum_probs=140.9
Q ss_pred HhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc----HHHHHHHHHHHHcCC
Q 010575 32 IFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI----ELGREIHCQTVGTGL 107 (507)
Q Consensus 32 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~ 107 (507)
+++.+..+|.......+.++...|.. .+...+..+.. .+|+..=...+.+++..|+. +.+...+..+...
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-- 101 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-- 101 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--
Confidence 44444567777777788888777754 34444444544 24555555667777777764 4566666665443
Q ss_pred CCcHHHHHHHHHHHHhcCCh-----HHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHH
Q 010575 108 DSDVHVVAALIQMYASCKCI-----YDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLI 182 (507)
Q Consensus 108 ~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 182 (507)
+++..+....+.++...+.. ..+...+..... .++..+-...+.++++.++.+....+...+..+|...-..-+
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~ 180 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF-DKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAA 180 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 45566666666666655421 233333333222 225556667777778888755554555555566666555555
Q ss_pred HHHHhCC-ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 183 AGYAQMD-QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 183 ~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
.++.+.+ +...+...+..++. .++...-...+.++.+.++. .+...+-...+.+. .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 5665543 24567777766664 45667777788888888885 45554444444432 234677888888885
Q ss_pred HHHHHHHHhcCC--CChhHHHHHHHHH
Q 010575 262 GKALQVFENMKN--KSVITWTTMIAGL 286 (507)
Q Consensus 262 ~~A~~~~~~~~~--~~~~~~~~l~~~~ 286 (507)
+|...+..+.+ +|..+-...+.++
T Consensus 252 -~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 -TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred -hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 57777777654 4554444444443
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.11 E-value=3.2 Score=34.31 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHH--HH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNE--ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG--CM 353 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 353 (507)
.+..+...|++.|+.++|++.|.++.+....|.. ..+..+|+.....+++..+.....++........+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666677777777777777776665433333 3445566666666777777766666654311111111111 11
Q ss_pred H--HHHhhcCCHHHHHHHHhhC
Q 010575 354 I--DLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 354 ~--~~~~~~g~~~~A~~~~~~~ 373 (507)
. -.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 1 1233467777777777665
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.88 E-value=4.1 Score=32.62 Aligned_cols=89 Identities=12% Similarity=0.023 Sum_probs=48.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhHH-HHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHH
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQY-GCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 397 (507)
.-...++.+.+..++..+.- +.|..... ..-...+.+.|++.+|..+|+.+ ...|....-..|+..|....+-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34466777888888777763 34443222 12233466778888888888887 333444444555555544333223
Q ss_pred HHHHHHHHhccCCC
Q 010575 398 GECALQHLIKLEPH 411 (507)
Q Consensus 398 A~~~~~~~~~~~p~ 411 (507)
=..+-+++++-.++
T Consensus 96 Wr~~A~evle~~~d 109 (160)
T PF09613_consen 96 WRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHhcCCC
Confidence 33334444444443
No 299
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.65 E-value=2.6 Score=39.81 Aligned_cols=127 Identities=9% Similarity=0.054 Sum_probs=88.1
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
-...|+.-.|-+-+......+.-.|+.....+. .+...|.++.+...+... .+.....+...++....+.|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344577766665555555443445554444333 355678888888888776 2334566778888888888999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCc
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPG 449 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 449 (507)
....+.++...-+++.+....+..-...|-++++...++++...+.+...|
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 998888888777767666666666667788899999998887655555555
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=0.54 Score=41.55 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=24.2
Q ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 010575 91 TIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELS 138 (507)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 138 (507)
+++++..++..-+..|+-||..+++.+|+.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344455555444555555555555555555555555555554444443
No 301
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.38 E-value=7.4 Score=34.39 Aligned_cols=58 Identities=19% Similarity=0.050 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
......|...|.+.+|.++.++++.++|-+...+..|...|...|+--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444578899999999999999999999999999999999999999888888888774
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.33 E-value=0.28 Score=26.98 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=14.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
+..++.+.|+.++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344444555555555555555555554
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.30 E-value=0.33 Score=28.52 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
+++.+...|...|++++|..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555556666666666665553
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.29 E-value=0.22 Score=39.64 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=27.0
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFD 135 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 135 (507)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444445555555555555544444445555555555555555555555554
No 305
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.19 E-value=5.9 Score=32.79 Aligned_cols=88 Identities=10% Similarity=-0.062 Sum_probs=40.4
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCCCCh----hHHHHHHHHHhhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcC
Q 010575 319 SACCHVGLVELGRRYFNIMKSRYGIEPKI----EQYGCMIDLLGRAGYLQEAEKLLRRMPFE-ANAAIWGSLLAASNIYG 393 (507)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g 393 (507)
..+...+++++|+..++..... +.|. ..--.|.......|.+++|+..++..... -.......-...+...|
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 3455556666666666555421 2221 11122334445556666666666554211 01111222233455555
Q ss_pred CHHHHHHHHHHHhccC
Q 010575 394 DVELGECALQHLIKLE 409 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~ 409 (507)
+-++|...|+++++..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 5555555555555544
No 306
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.18 E-value=1.7 Score=39.32 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh--c----CChHHHHHHHHhcccCCC
Q 010575 93 ELGREIHCQTVGTGLDSDVHVVAALIQMYAS--C----KCIYDARKVFDELSLRVW 142 (507)
Q Consensus 93 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~~p 142 (507)
+....+++.+.+.|+..+..+|-+..-.... . ....+|..+|+.|++..|
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 4556788888888888777666553333322 1 124567777777777644
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.94 E-value=16 Score=37.15 Aligned_cols=100 Identities=11% Similarity=-0.071 Sum_probs=53.2
Q ss_pred HHHHHccCChhHHHHHhccCCC--C---CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCC
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSK--P---DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLST 91 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 91 (507)
++-+.+.+.+++|.+..+.... + -...+...|..+...|++++|-...-.|.. -+..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 3445566677777777666543 1 123466667777777777777776666654 234445555555555544
Q ss_pred cHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 92 IELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
......+ +-......+..+|..++..+..
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 4332221 1111112344556666655554
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.90 E-value=0.24 Score=27.56 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
.++..++.++.+.|++++|++.+++....
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998643
No 309
>PRK09687 putative lyase; Provisional
Probab=91.87 E-value=9.3 Score=34.40 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
.+.++...|+. +|...+.++.+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 34444444443 35555555544444
No 310
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.52 E-value=0.28 Score=27.36 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.+|..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999987543
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.50 E-value=3.1 Score=34.41 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDE--IAMLAALSACAQLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 238 (507)
..+..+...|.+.|+.+.|.+.|.++.+....+.. ..+..++......+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35666777777777777777777777665433332 2345556666666677666666655543
No 312
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.42 E-value=8.6 Score=33.11 Aligned_cols=200 Identities=13% Similarity=-0.012 Sum_probs=111.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHHHHHHHHHHHc
Q 010575 212 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS--VITWTTMIAGLALH 289 (507)
Q Consensus 212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~ 289 (507)
.|.....+|....++++|...+.+..+.- +.+...| -..+.++.|.-+.+++.+-+ +..|+.-...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslf-------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLF-------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34444556666777777766665554221 1111111 11223444444444444422 23455556667777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhC----CCCChhHHHHHHHHHhhcCCHHH
Q 010575 290 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYG----IEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 290 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
|.++-|-..+++.-+. ...-+++.|+++|++...-.. ...-...+......+++..++++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 7777666666554321 123345555555554432110 01122345556667778888888
Q ss_pred HHHHHhhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCCCchHHHHHHHHHHcCCchHHH
Q 010575 366 AEKLLRRMP-------FEANA-AIWGSLLAASNIYGDVELGECALQHLIK----LEPHNSGNYAILSNIYAILGRWNESG 433 (507)
Q Consensus 366 A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~ 433 (507)
|-..+.+-. .-|+. ..+...|-.+....|+..|..+++.-.+ ..|++..+...|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 777666541 12232 2355566667777899999999988654 3567778888888666 457777776
Q ss_pred HHH
Q 010575 434 KIR 436 (507)
Q Consensus 434 ~~~ 436 (507)
++.
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 654
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.40 E-value=0.28 Score=25.47 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKIRK 437 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~ 437 (507)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677778888888888877765
No 314
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.40 E-value=8.6 Score=33.09 Aligned_cols=82 Identities=12% Similarity=0.099 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHHHHHHHHHHhCC
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTEKN--VISWTTLIAGYAQMD 189 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~ 189 (507)
.|..-..+|....++++|...+.+..+-.- +.. .+.-...++.|.-+.+++.+.+ +..|+--...|..+|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs-------lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS-------LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 344445556666666666665555432100 111 1111223334444444444321 223444555666666
Q ss_pred ChhHHHHHHHHH
Q 010575 190 QPNEAITLFRRM 201 (507)
Q Consensus 190 ~~~~a~~~~~~m 201 (507)
.++.|-..+++.
T Consensus 106 spdtAAmaleKA 117 (308)
T KOG1585|consen 106 SPDTAAMALEKA 117 (308)
T ss_pred CcchHHHHHHHH
Confidence 666665555543
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.29 E-value=9.4 Score=33.31 Aligned_cols=219 Identities=14% Similarity=0.155 Sum_probs=107.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHC---CC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----cC-CCCchhHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVE---NV--KPDEIAMLAALSACAQLGAVELGEWIHNYIEQ----YG-LNTIVPLNN 249 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~ 249 (507)
.+|..+.+.+++++....|.+|+.- .+ .-+....+.+++-.+...+.+....+++.-.+ .. -..--.+-.
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3445555555555555555554321 01 11233444454444444444443333332211 10 011111223
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC------------C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNK------------S---VITWTTMIAGLALHGLGREALDMFSRMERA-RVKPNEIT 313 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~------------~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~ 313 (507)
.|...|...+.+.+..++++++.+. + ...|..-|..|..+.+-.+...++++.... ..-|.+..
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 4566666667777766666665431 1 245666778888888877777788876542 23455544
Q ss_pred HHHHHHHH-----hccCcHHHHHHHHHHhHHhh---CCCCCh--hHHHHHHHHHhhcCC----HHHHHHHHhhCCCCCCH
Q 010575 314 FIAILSAC-----CHVGLVELGRRYFNIMKSRY---GIEPKI--EQYGCMIDLLGRAGY----LQEAEKLLRRMPFEANA 379 (507)
Q Consensus 314 ~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~---~~~~~~--~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~ 379 (507)
.. +|+-| .+.|.+++|..-|-++.+.+ |-+... .-|..|.+.+.+.|- ..+|.- .+..|..
T Consensus 230 mG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEI 304 (440)
T KOG1464|consen 230 MG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEI 304 (440)
T ss_pred Hh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHH
Confidence 43 34433 46688888876555554432 222222 224455566665541 111100 0233455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 010575 380 AIWGSLLAASNIYGDVELGECALQH 404 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~ 404 (507)
.....++.+|.. ++..+-++++..
T Consensus 305 lAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 305 LAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 566778877743 455444444443
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.86 E-value=2.3 Score=30.74 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 292 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 292 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
.-+...-+..+....+.|++......+.+|.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 34566667777777889999999999999999999999999999998764433 336766664
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.80 E-value=4.2 Score=33.71 Aligned_cols=99 Identities=8% Similarity=-0.011 Sum_probs=55.4
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcC
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYG 393 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 393 (507)
+...|++++|..-|..++.. +++. ...|..-..++.+.+.++.|+.-..+. .+.|. ......=..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34456666666666655542 2221 223333444556666666666655544 33331 112222234677778
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
.+++|+.-|+++++.+|....+-...++
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 8888999999998888885544444443
No 318
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.78 E-value=0.52 Score=25.21 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.|..+...+...|+++.|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555566666666666666666665554
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.77 E-value=3.5 Score=36.63 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCCCChhHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS----RYGIEPKIEQYGCM 353 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 353 (507)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44556666666666666666666666652 23556666677777777777766666666554 23556655555444
Q ss_pred HHH
Q 010575 354 IDL 356 (507)
Q Consensus 354 ~~~ 356 (507)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.67 E-value=1.1 Score=28.12 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
-.+..++.+.|++++|.+..+.++++.|++..+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 44667889999999999999999999999765433
No 321
>PRK10941 hypothetical protein; Provisional
Probab=90.66 E-value=3 Score=37.08 Aligned_cols=61 Identities=20% Similarity=0.102 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..+.+-.+|.+.++++.|.++.+.++.+.|+++.-+...+-+|.+.|.+..|..=++...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3456667889999999999999999999999999999999999999999999998877753
No 322
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.16 E-value=0.46 Score=26.63 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHHHhcCChHHHH
Q 010575 110 DVHVVAALIQMYASCKCIYDAR 131 (507)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~ 131 (507)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555566666666666665553
No 323
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.99 E-value=44 Score=38.94 Aligned_cols=63 Identities=19% Similarity=-0.013 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
..+|....+...++|+++.|...+-.+....-+..+.-.+.-....|+...|+.++++.++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 456777777777788888888766555322244455666667778888888888888887543
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.97 E-value=0.66 Score=25.74 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.+|..++.+|.+.|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999999864
No 325
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.59 E-value=11 Score=34.19 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHHHHc
Q 010575 191 PNEAITLFRRMQVENVKPDEIAMLAALSACAQ--LG----AVELGEWIHNYIEQY 239 (507)
Q Consensus 191 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 239 (507)
+++.+.+++.|.+.|+.-+..+|.+..-.... .. ....+..+++.|.+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 34556677888888877777766554333322 11 234566666666654
No 326
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.51 E-value=6.1 Score=28.38 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
+.-++.+-+..+....+.|++......+++|.+.+|+..|.++|+.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45566777777777888999999999999999999999999999988864333 4445665553
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.48 E-value=7 Score=38.25 Aligned_cols=130 Identities=16% Similarity=0.093 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChh
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPN 192 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 192 (507)
..+.++..+.+.|-.++|+.+--.-.. -.....+.|+++.|.++..+. .+..-|..|..+..+.+++.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~D~d~----------rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~ 683 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELSTDPDQ----------RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELP 683 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCCChhh----------hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccch
Confidence 345566666666666666654322111 123344556666666655443 24455677777777777777
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 010575 193 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 269 (507)
Q Consensus 193 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 269 (507)
.|.+.|....+ |..|+-.+...|+.+....+-....+.|. . |.-.-+|...|+++++.+++.
T Consensus 684 lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 684 LASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHH
Confidence 77766665543 23344445555555554444444444441 1 122223444555555555543
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.26 E-value=0.74 Score=26.96 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.++..|+.+|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678999999999999999999999863
No 329
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=89.26 E-value=0.7 Score=43.51 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=52.7
Q ss_pred HhhcCCHHHHHHHHhhC-CCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHH
Q 010575 357 LGRAGYLQEAEKLLRRM-PFEANAAIWGSLL-AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 434 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 434 (507)
+...+.++.|..++.++ ...||-..|...- .++.+.+++..|..=+.++++.+|.....|..-+.++.+.+.+.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34455666666666555 4455444433322 456667777777777777777777777777777777777777777777
Q ss_pred HHHHHH
Q 010575 435 IRKVMR 440 (507)
Q Consensus 435 ~~~~~~ 440 (507)
.|+...
T Consensus 94 ~l~~~~ 99 (476)
T KOG0376|consen 94 DLEKVK 99 (476)
T ss_pred HHHHhh
Confidence 666543
No 330
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.13 E-value=11 Score=30.67 Aligned_cols=134 Identities=10% Similarity=0.036 Sum_probs=85.3
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcC--CHHHHHHHHHhcCCC
Q 010575 96 REIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVG--DLNNARALFELMTEK 173 (507)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~A~~~~~~~~~~ 173 (507)
.+.++.+.+.++.|+...+..+++.+.+.|++.....++.-=.-. |.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~--DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~-- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIP--DSKPLACQLLSLGNQYPPAYQLGLDMLKRLG-- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC--CcHHHHHHHHHhHccChHHHHHHHHHHHHhh--
Confidence 356667778899999999999999999999988877776543322 4444333332222211 1344555555553
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY 239 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 239 (507)
..+..++..+...|++-+|+++.+...... .++ ...++.+..+.++...-..+++...+.
T Consensus 90 --~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 --TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred --hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 245677788889999999999887753321 122 234566666666666655666555543
No 331
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.13 E-value=22 Score=34.29 Aligned_cols=174 Identities=7% Similarity=0.040 Sum_probs=85.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 244 IVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
|....-+++..+..+.++.-.+.+-.+|.. .+-..|..++.+|..+ ..++-..+|+++.+..+. |...-..|...|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 333344555555555555555555555543 3444555666666665 445566666666654322 222222333333
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPK------IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGSLLAASNI 391 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~ 391 (507)
..++.+.+..+|.++..+ +.|. ...|..+...- ..+.+....+..++ +...-...+.-+-.-|..
T Consensus 143 -Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 -EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred -HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 336666666666666542 2221 12343333221 23444444444444 222233344444455556
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 392 YGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
..++.+|++++..+++.+..+..+...++.-+.
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 666677777776666665555554444444443
No 332
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.08 E-value=2.8 Score=30.03 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 010575 56 NPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119 (507)
Q Consensus 56 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (507)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+.... ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 344666777777777888888888888888888888888888888776332 223445655544
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.07 E-value=0.53 Score=25.81 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 415 NYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
++..++.++.+.|++++|.++++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998754
No 334
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.91 E-value=23 Score=34.12 Aligned_cols=238 Identities=10% Similarity=0.064 Sum_probs=120.8
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc------CCHHHHHHHHHHHHHcC-C-CCchhHHHHHHHHHHhcCCH-HH
Q 010575 193 EAITLFRRMQVENVKPDEIAMLAALSACAQL------GAVELGEWIHNYIEQYG-L-NTIVPLNNALIDMYAKSGKI-GK 263 (507)
Q Consensus 193 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~-~~ 263 (507)
....+|++..+ .-|+...+...|..|... ..+.....+++.....+ . +.....|..+.-.++..... +-
T Consensus 300 ~~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 34456666554 235555565566655432 23444455555554433 2 23345555565556555543 33
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHH--HHHHHHhH
Q 010575 264 ALQVFENMKNKSVITWTTMIAGLALH-GLGREA-LDMFSRMERARVKPNEITFIAILSACCHVGL-VELG--RRYFNIMK 338 (507)
Q Consensus 264 A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a--~~~~~~~~ 338 (507)
|..+..+....+...|-.-+...... .+++-- .++|......-..+....|.... .|+ ++.. ..++..+.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 44444455556666665555444422 122111 11222222221122223333322 122 1111 11222222
Q ss_pred HhhCCCCChhH-HHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccCCCCC
Q 010575 339 SRYGIEPKIEQ-YGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAAS--NIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 339 ~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
+ -..|+..+ -+.+++-+.+.|-..+|...+..+ .. .|+...|..++..- ...-+...+..+|+.++.-.-.++
T Consensus 453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 2 22344333 345677777888888888888877 22 34666777776532 222347777888888865333667
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
..|......-...|..+.+-.++-+.
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHH
Confidence 78887776666777777776665544
No 335
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.85 E-value=28 Score=35.07 Aligned_cols=270 Identities=11% Similarity=0.021 Sum_probs=160.9
Q ss_pred HHHHHHHHHhcCCC-ChhHHHHHHHH-----HHhCCChhHHHHHHHHHhH-------CCCCCCHHHHHHHHHHHhccC--
Q 010575 160 LNNARALFELMTEK-NVISWTTLIAG-----YAQMDQPNEAITLFRRMQV-------ENVKPDEIAMLAALSACAQLG-- 224 (507)
Q Consensus 160 ~~~A~~~~~~~~~~-~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~-- 224 (507)
...|.++++...+. ++..-..+... +....+.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 46778888777653 33333333332 4456789999999999876 44 2224455666666543
Q ss_pred ---CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc---CCHHHHHHHHHhcCCC-ChhHHHHHHHHHH----HcCChH
Q 010575 225 ---AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS---GKIGKALQVFENMKNK-SVITWTTMIAGLA----LHGLGR 293 (507)
Q Consensus 225 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~ 293 (507)
+.+.|..++....+.| .|+.... +..+|... .+...|.++|....+. .+.++-.+..+|. ...+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 6677999999888888 3444433 33333332 4678899999887764 3333333333333 234788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH---hh----cCCHHHH
Q 010575 294 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL---GR----AGYLQEA 366 (507)
Q Consensus 294 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A 366 (507)
.|..++++..+.| .|...--...+..+.. +.++.+.-.+..+... +.+.....-..++... .. ..+.+.+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 9999999998887 4443322333344444 6666666666555543 3322211111111111 11 2356777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-C--CchHHHHHHHHH
Q 010575 367 EKLLRRMPFEANAAIWGSLLAASNIY----GDVELGECALQHLIKLEPHNSGNYAILSNIYAIL-G--RWNESGKIRKVM 439 (507)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~ 439 (507)
..++.+...+-+......+...|... .+++.|...+.++.... ......++..+... | .+..|.+++++.
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 77777775556666666666665433 36888888888886666 56677777766543 1 167788888777
Q ss_pred Hh
Q 010575 440 RD 441 (507)
Q Consensus 440 ~~ 441 (507)
..
T Consensus 536 ~~ 537 (552)
T KOG1550|consen 536 SE 537 (552)
T ss_pred Hh
Confidence 54
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.75 E-value=12 Score=36.84 Aligned_cols=150 Identities=17% Similarity=0.094 Sum_probs=99.8
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 010575 257 KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNI 336 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (507)
-.|+++.|..++..+.++ ..+.++..+.+.|-.++|+++ .+|+.-- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 456777777766665532 334455566667766666643 3333211 1223467888888877655
Q ss_pred hHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 337 MKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
.. +..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+.-..+-..+.+.+.+|.
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~--- 726 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL--- 726 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch---
Confidence 43 56778899999999999999999988773 256677777788887766666666655555542
Q ss_pred HHHHHHHHHcCCchHHHHHHHHH
Q 010575 417 AILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 417 ~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
...+|...|+++++.+++.+.
T Consensus 727 --AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHHhc
Confidence 233677889999999988665
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.32 E-value=3.1 Score=34.69 Aligned_cols=75 Identities=23% Similarity=0.153 Sum_probs=50.4
Q ss_pred hhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHHcCCchH
Q 010575 358 GRAGYLQEAEKLLRRMPFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH----NSGNYAILSNIYAILGRWNE 431 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 431 (507)
.+.|+ ++|.+.|-.+...| +.......+..|....|.+++++++-+++++.+. |+.++..|+.++.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 56666666662222 3334444445555677889999999888775432 57888899999999999888
Q ss_pred HH
Q 010575 432 SG 433 (507)
Q Consensus 432 A~ 433 (507)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 338
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.18 E-value=12 Score=32.23 Aligned_cols=88 Identities=11% Similarity=-0.058 Sum_probs=63.1
Q ss_pred HHHHhhcCCHHHHHHHHhhC---------CCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 354 IDLLGRAGYLQEAEKLLRRM---------PFEANAAI-----------WGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.+-+.+.|++.+|..-|.++ +.+|...- +..+-.++...|++-++++....++...|.+.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 33445566666666555443 23343332 33334455678999999999999999999999
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.+|..-+.+....=+..+|.+=|..+..
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 9999999988888888889888888763
No 339
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.05 E-value=1.7 Score=36.99 Aligned_cols=83 Identities=13% Similarity=-0.032 Sum_probs=44.7
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHH-HHHHHHHHcCCHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWG-SLLAASNIYGDVEL 397 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~g~~~~ 397 (507)
|.....++.|+..|.+.+ -+.|+. ..|+.=+.++.+..+++.+..--.+. .+.||...-. .+.........+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444556666666666555 335554 33344455555666666665544444 4455544333 33334455666666
Q ss_pred HHHHHHHHh
Q 010575 398 GECALQHLI 406 (507)
Q Consensus 398 A~~~~~~~~ 406 (507)
|+..+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 666666663
No 340
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.43 E-value=17 Score=30.83 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
.||..+..-+...|+.++|..+|+-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3566666666677777777777766654
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.36 E-value=2.7 Score=30.47 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 010575 59 NAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119 (507)
Q Consensus 59 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (507)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455666666666777777777777777777777777777777665442 222225555544
No 342
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.26 E-value=20 Score=31.45 Aligned_cols=176 Identities=9% Similarity=0.032 Sum_probs=87.6
Q ss_pred CcHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHhcCChHHHHHHHHhccc-------CCCChhhHHHHHHHHHhcCCH
Q 010575 91 TIELGREIHCQTVGTGLDSDV---HVVAALIQMYASCKCIYDARKVFDELSL-------RVWNVAVWNTMVAGYAKVGDL 160 (507)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~li~~~~~~~~~ 160 (507)
++++|+.-|+..++...+.-. .....++..+.+.|++++....|.++.. +..+..+.|+++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455555555555443222211 2223344555555555555555554432 122445555655555555555
Q ss_pred HHHHHHHHhcCC-----CChh----HHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-----------HHHHHHHHHHH
Q 010575 161 NNARALFELMTE-----KNVI----SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPD-----------EIAMLAALSAC 220 (507)
Q Consensus 161 ~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~ll~~~ 220 (507)
+-....++.-.+ .+.. +-+-|...|...+.+.+..++++++..+....+ ...|..-+..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 544444433221 1222 223466667777777777777777765421111 23466666677
Q ss_pred hccCCHHHHHHHHHHHHHcCC-CCchhHHHHHHH-----HHHhcCCHHHHHHH
Q 010575 221 AQLGAVELGEWIHNYIEQYGL-NTIVPLNNALID-----MYAKSGKIGKALQV 267 (507)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~-----~~~~~~~~~~A~~~ 267 (507)
....+-.....++++...... -|.+.+. ..|+ ...+.|++++|..-
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhH
Confidence 777776666777776554321 2333222 2232 23455677766543
No 343
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.22 E-value=1.4 Score=35.83 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 395 VELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 395 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+++|+.-|++++.++|+...++.+++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 466777777788888888888888888887654
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.63 E-value=7.8 Score=32.37 Aligned_cols=75 Identities=12% Similarity=-0.034 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh--CCCCChhHHHHHHHHHhhcCCHHHHH
Q 010575 292 GREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY--GIEPKIEQYGCMIDLLGRAGYLQEAE 367 (507)
Q Consensus 292 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 367 (507)
-+.|...|-++...+.--++.....|...|. ..|.+++++++....+-. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3667777777766655445444444444444 567777777777766532 22456777777777777777777664
No 345
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.59 E-value=32 Score=33.20 Aligned_cols=391 Identities=14% Similarity=0.151 Sum_probs=196.9
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHH-HHcCCCchHHHHHHHHHHHcCCCCCccc-HH
Q 010575 6 LDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKA-LCQTDNPLNAVILYNKIQASALRPDNYS-FP 80 (507)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~ 80 (507)
+..|+..|...+..+-+.+.+.+.-.+|.+|.. .++..|-.-..- |..+-+++.|..+|.+-++. .|+... |.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~--npdsp~Lw~ 178 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF--NPDSPKLWK 178 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc--CCCChHHHH
Confidence 456899999999988888889999999988764 344555444333 33444588999999888773 455432 21
Q ss_pred HHHH---HHH-c-------cC-Cc-HHHHHHHHHHHH-cCCCCcHH--HHHH-H--HHHHHhcCCh-HHHHHHHHhcccC
Q 010575 81 FVLK---AVV-K-------LS-TI-ELGREIHCQTVG-TGLDSDVH--VVAA-L--IQMYASCKCI-YDARKVFDELSLR 140 (507)
Q Consensus 81 ~l~~---~~~-~-------~~-~~-~~a~~~~~~~~~-~~~~~~~~--~~~~-l--~~~~~~~g~~-~~A~~~~~~~~~~ 140 (507)
.-++ .++ + .| +. +.-.++-+.-.. ....++.. -++. . .......... +.-..+.+.+...
T Consensus 179 eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~ 258 (568)
T KOG2396|consen 179 EYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSK 258 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 111 0 01 00 010111110000 00111111 0000 0 1111111111 1122344555554
Q ss_pred CC-ChhhHHHHHH----HHHh---------------cCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCC------Chh
Q 010575 141 VW-NVAVWNTMVA----GYAK---------------VGDLNNARALFELMTE--KNVISWTTLIAGYAQMD------QPN 192 (507)
Q Consensus 141 ~p-~~~~~~~li~----~~~~---------------~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~------~~~ 192 (507)
.| ++.+|..+.. .+.+ ..+.+....+|+...+ ++...|+..|..|...- ...
T Consensus 259 ~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~ 338 (568)
T KOG2396|consen 259 APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRIL 338 (568)
T ss_pred CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44 4444443322 2222 2233445677777765 34556666666554332 334
Q ss_pred HHHHHHHHHhHCC-CCC-CHHHHHHHHHHHhccCCHHH-HHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHH-HHH
Q 010575 193 EAITLFRRMQVEN-VKP-DEIAMLAALSACAQLGAVEL-GEWIHNYIEQYGLNTIVPLNNALIDMYAKSG-KIGKA-LQV 267 (507)
Q Consensus 193 ~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A-~~~ 267 (507)
....+|+.....+ ..+ ....|..+.-.+........ |..+. ..++..+...|..-+....... +.+-- ..+
T Consensus 339 h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~----~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l 414 (568)
T KOG2396|consen 339 HTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLT----TELFRDSGKMWQLKLQVLIESKSDFQMLFEEL 414 (568)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhh----HHHhcchHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 4455555554432 333 33455555555555544332 23332 2233445555554444444221 22211 112
Q ss_pred HHhcC----CCChhHHHHHHHHHHHcCC-hHH-HH-HHHHHHHHCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHhHH
Q 010575 268 FENMK----NKSVITWTTMIAGLALHGL-GRE-AL-DMFSRMERARVKPNEITFI-AILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 268 ~~~~~----~~~~~~~~~l~~~~~~~~~-~~~-A~-~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
|.... .+-...|+... .++ ... .+ .++...... ..|+..|+. .++.-+.+.|-..+|...+..+..
T Consensus 415 ~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~ 488 (568)
T KOG2396|consen 415 FNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE 488 (568)
T ss_pred HHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 22222 23334454444 122 111 11 122223333 345555543 566777788888999999988875
Q ss_pred hhCCCCChhHHHHHHHHH---hhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCC
Q 010575 340 RYGIEPKIEQYGCMIDLL---GRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIK-LEPH 411 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~ 411 (507)
--+|+...|..++..= ..+| +.-+..+|+.| ....++..|...+.--...|..+.+-.++.++.+ ++|.
T Consensus 489 --lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 489 --LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred --CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 4456777777777543 2233 77777888877 2336777888888777788998888888888754 4554
No 346
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.25 E-value=34 Score=33.16 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 253 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 253 (507)
|-...-+++..+..+-.+.-+..+..+|+.-| -+-..|..++.+|... ..+.-..+++++++..+. |+..-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33445556666666666666677777776644 3556666677766666 445556666666665432 2333344444
Q ss_pred HHHhcCCHHHHHHHHHhcCCC------Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc
Q 010575 254 MYAKSGKIGKALQVFENMKNK------SV---ITWTTMIAGLALHGLGREALDMFSRMER-ARVKPNEITFIAILSACCH 323 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~ 323 (507)
.|-+ ++.+.+...|..+..+ +. ..|..+...- ..+.+..+.+..+... .|..--...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 5666666665554321 11 1333333211 2334444444444432 2222233344444445555
Q ss_pred cCcHHHHHHHHHHhHH
Q 010575 324 VGLVELGRRYFNIMKS 339 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~ 339 (507)
..++.+|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 5566666666555554
No 347
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.14 E-value=9.2 Score=34.23 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=66.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010575 240 GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN-KS--------VITWTTMIAGLALHGLGREALDMFSRMERARVKPN 310 (507)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 310 (507)
|.+....+...++..-....+++.++..+-.++. ++ ..+|-.+ + -.-++++++.++..=+.-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhccccc
Confidence 3344444455555555556677777777666654 21 2233222 2 23356788888888888899999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
..+++.++..+.+.+++..|.++...|..+
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988888777764
No 348
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.59 E-value=13 Score=35.50 Aligned_cols=103 Identities=15% Similarity=0.041 Sum_probs=70.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---C---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCCH--
Q 010575 253 DMYAKSGKIGKALQVFENMKN---K---------SVITWTTMIAGLALHGLGREALDMFSRMER-------ARVKPNE-- 311 (507)
Q Consensus 253 ~~~~~~~~~~~A~~~~~~~~~---~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-------~g~~p~~-- 311 (507)
+.+.-.|++.+|.+++....- + .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 445667899999988875431 1 123567777777777877777777776653 4655532
Q ss_pred ---------HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 010575 312 ---------ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 358 (507)
Q Consensus 312 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (507)
.+|+ ..-.+...|++-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 2333 233467789999999999999874 4667788888888875
No 349
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=85.43 E-value=4.9 Score=31.61 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=58.3
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcC-----CCCCcccHHHHHHHHHccCC-cHHHHHHHHHHHHcCCCCcHHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASA-----LRPDNYSFPFVLKAVVKLST-IELGREIHCQTVGTGLDSDVHVVAA 116 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (507)
..|+++.-....+++...+.+++.+..-. -.-+..+|..++.+.++..- --.+..+|..+.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46777777777778887777777764311 02356678888888866655 4566778888888777888888888
Q ss_pred HHHHHHhc
Q 010575 117 LIQMYASC 124 (507)
Q Consensus 117 l~~~~~~~ 124 (507)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88877654
No 350
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.36 E-value=0.66 Score=41.59 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=59.3
Q ss_pred hcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 359 RAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
..|.+++|++.|... +..| ....|..=..++.+.+....|++-+..+++++|+...-|-.-..+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 456677777777665 3333 33344444556667777777777777778888887777777777777778888888777
Q ss_pred HHHHhCCCc
Q 010575 437 KVMRDMGVK 445 (507)
Q Consensus 437 ~~~~~~~~~ 445 (507)
....+.++.
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 777666554
No 351
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.09 E-value=2.5 Score=30.29 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=22.9
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 400 CALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
..++..++.+|+|......++..+...|++++|++.+-.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444555566666666666666666666666666655554
No 352
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.04 E-value=6 Score=33.89 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCHH-------HHHHHHHHHhccC--CC----CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 381 IWGSLLAASNIYGDVE-------LGECALQHLIKLE--PH----NSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
.+..+.+.|...|+.+ .|...|+++.+.. |. ...+...++.+..+.|++++|.++|.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4555666777777744 4455555554322 22 2356778899999999999999999998643
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.52 E-value=55 Score=34.13 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=91.2
Q ss_pred HhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHH--HHHh
Q 010575 256 AKSGKIGKALQVFENMKN--------KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEIT---FIAIL--SACC 322 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~---~~~l~--~~~~ 322 (507)
...|+++.|.++-+.... ..++.+..+..+..-.|++++|..+..+..+.--.-+... |..+. ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 345777777776665443 2455667777777788888888888776654322223222 22222 2345
Q ss_pred ccCc--HHHHHHHHHHhHHhhCCC-C----ChhHHHHHHHHHhhc-CCHHHHHHHHhhC---CCCCCHHHH--HHHHHHH
Q 010575 323 HVGL--VELGRRYFNIMKSRYGIE-P----KIEQYGCMIDLLGRA-GYLQEAEKLLRRM---PFEANAAIW--GSLLAAS 389 (507)
Q Consensus 323 ~~g~--~~~a~~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~-g~~~~A~~~~~~~---~~~~~~~~~--~~l~~~~ 389 (507)
.+|. ++.....|......+... | -..++..+..++.+. +...+|..-+.-- ...|-.... ..|+...
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 5663 233333333333221111 1 122333344444441 1222222222211 112222222 2566777
Q ss_pred HHcCCHHHHHHHHHHHhccCCCC-Cc-hHHH---H--HHHHHHcCCchHHHHHHHHH
Q 010575 390 NIYGDVELGECALQHLIKLEPHN-SG-NYAI---L--SNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~-~~-~~~~---l--~~~~~~~g~~~~A~~~~~~~ 439 (507)
...|+.++|...+.++..+--++ +. .|.. . .......|+.+++.....+-
T Consensus 629 ~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 629 FLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 88899999999888885532221 11 1221 1 12223568888888777664
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.40 E-value=2.1 Score=25.68 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 417 AILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 417 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
..|+.+|.+.|+.+.|.++++++...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46788999999999999999888743
No 355
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.13 E-value=1.7 Score=23.54 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 393 GDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 393 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888888877643
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.97 E-value=11 Score=35.89 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=45.6
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~ 399 (507)
...|+++.+.+.+..... -+.....+..+++....+.|++++|..+-..| +. -.++.............|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 345666666666555543 22233445555666666666666666666555 11 113333333333344455566666
Q ss_pred HHHHHHhccCCC
Q 010575 400 CALQHLIKLEPH 411 (507)
Q Consensus 400 ~~~~~~~~~~p~ 411 (507)
..+++++.++|+
T Consensus 412 ~~wk~~~~~~~~ 423 (831)
T PRK15180 412 HYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccCCh
Confidence 666666665554
No 357
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.35 E-value=0.75 Score=36.52 Aligned_cols=87 Identities=10% Similarity=0.110 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 010575 45 NTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASC 124 (507)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (507)
..++..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++.. +..-...+++.+.+.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKH 83 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhc
Confidence 3457777788888889899998887665566777888899999988878877776611 112234566777777
Q ss_pred CChHHHHHHHHhcc
Q 010575 125 KCIYDARKVFDELS 138 (507)
Q Consensus 125 g~~~~A~~~~~~~~ 138 (507)
|.+++|.-++.++.
T Consensus 84 ~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 84 GLYEEAVYLYSKLG 97 (143)
T ss_dssp TSHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHcc
Confidence 77777777766543
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.22 E-value=7.6 Score=32.79 Aligned_cols=53 Identities=9% Similarity=-0.021 Sum_probs=23.4
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDEL 137 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 137 (507)
..+.+.+.+++++...++-++..+. |......+++.|+-.|++++|..-++-.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3344444444444444444444322 3334444444455555555544444433
No 359
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.10 E-value=15 Score=26.61 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=36.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHH
Q 010575 152 AGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 213 (507)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 213 (507)
..+...|++++|..+.+...-||...|..|.. .+.|..+++..-+..|..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 44556677777777777776677777766544 35666666666666666665 3444443
No 360
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.04 E-value=3.8 Score=39.80 Aligned_cols=99 Identities=18% Similarity=0.087 Sum_probs=63.0
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHH
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPK--IEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
-.|+...|...+..+.- ..|- ......|.+.+.+.|....|..++.+. . ....+-++..+.+++....+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 34777777777766652 2332 223344556666666666777666554 1 123445667777778888888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
++.|+++++.+|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888888887776666644433
No 361
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.67 E-value=22 Score=28.13 Aligned_cols=51 Identities=6% Similarity=-0.094 Sum_probs=23.2
Q ss_pred cCCcHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHhcccCC
Q 010575 89 LSTIELGREIHCQTVGTGLD-SDVHVVAALIQMYASCKCIYDARKVFDELSLRV 141 (507)
Q Consensus 89 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 141 (507)
.++++.+..+++.|.-.-+. +...++ -...+...|++++|.++|+++.+..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccC
Confidence 45555555555555443221 111122 1223445555555555555555543
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.16 E-value=64 Score=33.08 Aligned_cols=158 Identities=11% Similarity=0.068 Sum_probs=79.8
Q ss_pred HHHHHHHHHH-ccCChhHHHHHhccCC----CCCc-----ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCC----CCcc
Q 010575 12 LLSRFIDSCS-SLGFSDYAYSIFTHKS----KPDV-----YLYNTTIKALCQTDNPLNAVILYNKIQASALR----PDNY 77 (507)
Q Consensus 12 ~~~~l~~~~~-~~g~~~~A~~~~~~~~----~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~ 77 (507)
++-.+...|. ...+++.|+..+++.. +++. .+-..+++.+.+.+... |...+++..+.--. +-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4555666665 5677888888777642 1221 11223445555555444 77777776653111 1112
Q ss_pred cHHHH-HHHHHccCCcHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHH--hcCChHHHHHHHHhcccC-----------
Q 010575 78 SFPFV-LKAVVKLSTIELGREIHCQTVGTG---LDSDVHVVAALIQMYA--SCKCIYDARKVFDELSLR----------- 140 (507)
Q Consensus 78 ~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~----------- 140 (507)
.|..+ +..+...+++..|.+.++.+.... ..|-..++..++.+.. +.+..+++.+.++++...
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 22222 222223367888888777776543 2334444444554433 345455555555544111
Q ss_pred CCChhhHHHHHHHH--HhcCCHHHHHHHHHhc
Q 010575 141 VWNVAVWNTMVAGY--AKVGDLNNARALFELM 170 (507)
Q Consensus 141 ~p~~~~~~~li~~~--~~~~~~~~A~~~~~~~ 170 (507)
.|-..+|..+++.+ ...|+++.+...++.+
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22344555555433 3456655665555444
No 363
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.94 E-value=6.3 Score=33.24 Aligned_cols=62 Identities=24% Similarity=0.152 Sum_probs=46.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
+.-+..+.+.+++++|+...+.- +.+| |..+-..++..++-.|++++|..-++-+-++.|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 44566777888888888877654 5556 44456677778888899999988888888888874
No 364
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.61 E-value=33 Score=29.50 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHHhHHhhCCCC-ChhH---HHHHHHHHhhcCCHHHHHHHHhhC---CCCCCHHHHH---HHHH--HH-HH
Q 010575 325 GLVELGRRYFNIMKSRYGIEP-KIEQ---YGCMIDLLGRAGYLQEAEKLLRRM---PFEANAAIWG---SLLA--AS-NI 391 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~---~l~~--~~-~~ 391 (507)
.++++|+..|+..-+-+...- +... +..+...-...+++.+|+++|++. ....+..-|. .++. .| ..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 566667777766654322222 2211 222333345678899999999887 2222222222 1222 23 33
Q ss_pred cCCHHHHHHHHHHHhccCCCCC
Q 010575 392 YGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
..|.-.+...+++-.+++|.-.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccc
Confidence 3677788888888888999833
No 365
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.39 E-value=68 Score=32.87 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=11.8
Q ss_pred hhcCCHHHHHHHHhhCCCCC
Q 010575 358 GRAGYLQEAEKLLRRMPFEA 377 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~ 377 (507)
...|++++|++.++++++-|
T Consensus 516 ~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 516 YHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHTT-HHHHHHHHHHTT-S-
T ss_pred HHcCCHHHHHHHHHhCCCCC
Confidence 45677777777777776555
No 366
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=81.30 E-value=29 Score=31.43 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhccCCCCCchHH
Q 010575 396 ELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
..|.+.+.++.+.+|.-|..+.
T Consensus 379 ~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHHH
Confidence 3577788888899988665443
No 367
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.27 E-value=64 Score=32.54 Aligned_cols=149 Identities=9% Similarity=0.034 Sum_probs=66.4
Q ss_pred cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhcc----C-cHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 289 HGLGREALDMFSRMER-------ARVKPNEITFIAILSACCHV----G-LVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 289 ~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~----g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
..+.+.|+.+|+.+.+ .|.+ .....+..+|.+. . +.+.|..++....+. | .|+....-..+..
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYE 336 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHH
Confidence 3455555555555544 3321 2333344444432 2 455566666666542 2 2333222222211
Q ss_pred Hhh-cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-CCch
Q 010575 357 LGR-AGYLQEAEKLLRRMPFEANAAIWGSLLAASN----IYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL-GRWN 430 (507)
Q Consensus 357 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~ 430 (507)
... ..+..+|.++|..+...-....+..+...|. ...+.+.|..+++++.+.++. .+...+...+.-. ++++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGVGRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHcccccc
Confidence 111 1345667777666632223333322222221 223667777777777666522 2222222222211 6666
Q ss_pred HHHHHHHHHHhCCC
Q 010575 431 ESGKIRKVMRDMGV 444 (507)
Q Consensus 431 ~A~~~~~~~~~~~~ 444 (507)
.+.-.+..+...|.
T Consensus 415 ~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 415 TALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHhhh
Confidence 66665555544444
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.93 E-value=3.2 Score=21.76 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.7
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..+..++.++...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999988764
No 369
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.55 E-value=7.4 Score=31.82 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=36.1
Q ss_pred CCCCH-HHHHHHHHHHHHcC-----------CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 375 FEANA-AIWGSLLAASNIYG-----------DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 375 ~~~~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+.|+- .++..+..++...+ .+++|...|+++...+|++. .|..-+.+. .+|-++..++.+.
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHS
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHH
Confidence 44543 45555666554433 26777888888888999964 444333333 3477777777666
Q ss_pred CCc
Q 010575 443 GVK 445 (507)
Q Consensus 443 ~~~ 445 (507)
+..
T Consensus 137 ~~~ 139 (186)
T PF06552_consen 137 GLG 139 (186)
T ss_dssp SS-
T ss_pred Hhh
Confidence 554
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.47 E-value=20 Score=26.09 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010575 226 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERA 305 (507)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 305 (507)
.++|..+-+-+...+.. ...+--.-+..+...|++++|..+.+....||...|.+|-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34454444444443311 22222233455777889999999888888888888866643 4567777777777777776
Q ss_pred CCCCCHHHHH
Q 010575 306 RVKPNEITFI 315 (507)
Q Consensus 306 g~~p~~~~~~ 315 (507)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44444443
No 371
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.09 E-value=34 Score=28.56 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=34.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 010575 251 LIDMYAKSGKIGKALQVFENMKNKSVIT--WTTMIAGLALHGLGREALDMFSRMERAR 306 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g 306 (507)
|.......|.+++|...++....++-.. ...-...+...|+-++|..-|++..+.+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4455566667777777776666654332 3334455666777777777777766654
No 372
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.02 E-value=9.8 Score=34.38 Aligned_cols=91 Identities=15% Similarity=0.066 Sum_probs=71.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-P---FEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
|.-=.+-|.+..++..|...|.+- . ..| +.+.|+.=..+....|++..|+.-..+++.++|.+..+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 334455677788888888888765 1 122 4566777777778889999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHH
Q 010575 424 AILGRWNESGKIRKVMR 440 (507)
Q Consensus 424 ~~~g~~~~A~~~~~~~~ 440 (507)
....++++|..+.++..
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999888888887764
No 373
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.91 E-value=14 Score=28.51 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=31.5
Q ss_pred HHHHHHHHHh--ccCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 397 LGECALQHLI--KLEPHNSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 397 ~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
.+..+|+.+. +++-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6777777774 45666677888888888888888888888864
No 374
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.20 E-value=9.1 Score=30.12 Aligned_cols=64 Identities=20% Similarity=0.179 Sum_probs=47.6
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCc
Q 010575 363 LQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRW 429 (507)
Q Consensus 363 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 429 (507)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|..+....+++|.+.|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 466777777774 3344455556677899999999999999999999999999999988877643
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.72 E-value=4.4 Score=27.81 Aligned_cols=46 Identities=7% Similarity=-0.000 Sum_probs=32.7
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHcCCchHHHHHH
Q 010575 391 IYGDVELGECALQHLIKLEPHNSG---NYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
...+.++|+..++++++..++.+. ++-.|+.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888776666444 3445666778888888887763
No 376
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.06 E-value=39 Score=29.96 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=46.2
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK---- 257 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 257 (507)
|.+++..++|.+++...-+--+.--+........-|-.|.+.+.+..+.++-....+..-..+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666777777776655443322211122233344444566777777666666665554333334446666655543
Q ss_pred -cCCHHHHHHHH
Q 010575 258 -SGKIGKALQVF 268 (507)
Q Consensus 258 -~~~~~~A~~~~ 268 (507)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555554
No 377
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.76 E-value=73 Score=30.64 Aligned_cols=207 Identities=13% Similarity=0.040 Sum_probs=97.5
Q ss_pred HHccCChhHHHHHhccCCCCCccc--HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcc--cHHHHHHHHHccCCcHHH
Q 010575 20 CSSLGFSDYAYSIFTHKSKPDVYL--YNTTIKALCQTDNPLNAVILYNKIQASALRPDNY--SFPFVLKAVVKLSTIELG 95 (507)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a 95 (507)
.++.|+.+-+..+++....++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+
T Consensus 9 A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 9 AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred HHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 355678888877777655544322 233444455666654 334444555545422 122344455667777665
Q ss_pred HHHHHHHHHcCCCCcHH---HHHHHHHHHHhcCChHHHHHHHHhcccC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 96 REIHCQTVGTGLDSDVH---VVAALIQMYASCKCIYDARKVFDELSLR-VWNVAVWNTMVAGYAKVGDLNNARALFELMT 171 (507)
Q Consensus 96 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 171 (507)
..+++ .|...+.. .-...+...+..|+.+-+..+++.-... .++.. -.+.+...+..|+.+-+.-+++.-.
T Consensus 85 ~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~-g~tpLh~A~~~~~~~~v~~Ll~~g~ 159 (413)
T PHA02875 85 EELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTD-KFSPLHLAVMMGDIKGIELLIDHKA 159 (413)
T ss_pred HHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhcCC
Confidence 54443 33211110 0122334445567766555555432211 11211 1234455566777777766666544
Q ss_pred CC---ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc
Q 010575 172 EK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIA---MLAALSACAQLGAVELGEWIHNYIEQYGLNTI 244 (507)
Q Consensus 172 ~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 244 (507)
.. |..-++.|. ..+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+-+ +.+.+.|..++
T Consensus 160 ~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv----~~Ll~~gad~n 229 (413)
T PHA02875 160 CLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV----RLFIKRGADCN 229 (413)
T ss_pred CCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH----HHHHHCCcCcc
Confidence 32 222222222 234445543 3444555565554321 12334434455665443 34445555544
No 378
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.47 E-value=96 Score=31.82 Aligned_cols=18 Identities=6% Similarity=0.194 Sum_probs=9.3
Q ss_pred HHHcCCchHHHHHHHHHH
Q 010575 423 YAILGRWNESGKIRKVMR 440 (507)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~ 440 (507)
|.-.|+++.+++++.+..
T Consensus 437 y~La~~~d~vl~lln~~L 454 (613)
T PF04097_consen 437 YHLAEEYDKVLSLLNRLL 454 (613)
T ss_dssp HHHTT-HHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 333446666666665554
No 379
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.05 E-value=4.5 Score=34.31 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=44.5
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKK 446 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 446 (507)
..+.+|.+.|.+++.+++++.|.....|..++..-.+.|+++.|.+.+++..+.+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456777888888888888888888888888888888888888888888877655543
No 380
>PRK13342 recombination factor protein RarA; Reviewed
Probab=75.46 E-value=80 Score=30.46 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHh---CCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC
Q 010575 176 ISWTTLIAGYAQ---MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 224 (507)
Q Consensus 176 ~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 224 (507)
..+..+++++.+ .++.+.|+.++..|.+.|..|....-..+..++-..|
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 344555555554 4788889999999998887776555555554444333
No 381
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.27 E-value=7 Score=23.47 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=11.7
Q ss_pred HHHHHHccCCcHHHHHHHHHHHH
Q 010575 82 VLKAVVKLSTIELGREIHCQTVG 104 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~ 104 (507)
+.++|...|+.+.|.+++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 382
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.62 E-value=21 Score=27.69 Aligned_cols=71 Identities=14% Similarity=0.044 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHHHhhcCC---HHHHHHHHhhC-C-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 344 EPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM-P-FEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 344 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
.++..+-..+..++.+..+ ..+.+.+++.. + ..| ......-|..++.+.++++++.++.+.+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3444444445555555443 34445555554 2 223 2234455666788999999999999999999988654
No 383
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=74.06 E-value=1.4e+02 Score=32.48 Aligned_cols=92 Identities=9% Similarity=-0.058 Sum_probs=38.6
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 345 PKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
++...-...+.++.+.|..+.+...+..+-..++...-...+.++...+. +++...+..+++ +|+ ...-...+.++.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-D~~-~~VR~~A~~aL~ 863 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-DPH-LDVRKAAVLALT 863 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-CCC-HHHHHHHHHHHh
Confidence 34555555555555555544333333322223444444444445544443 233344444332 222 334444444444
Q ss_pred HcCCchHHHHHHHHH
Q 010575 425 ILGRWNESGKIRKVM 439 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~ 439 (507)
+.+.-.++...+...
T Consensus 864 ~~~~~~~a~~~L~~a 878 (897)
T PRK13800 864 RWPGDPAARDALTTA 878 (897)
T ss_pred ccCCCHHHHHHHHHH
Confidence 432223444444333
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.89 E-value=12 Score=26.95 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=35.0
Q ss_pred HHcCCHHHHHHHHHHHhccCCCC---------CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 390 NIYGDVELGECALQHLIKLEPHN---------SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+.||+..|.+.+.+.......+ ..+...++.+....|++++|.+.+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56778888877777765432211 2244567778888899999999988875
No 385
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=73.60 E-value=29 Score=24.50 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=28.2
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHH
Q 010575 257 KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREAL 296 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 296 (507)
..|+.+.|++++..+. +.+..|..++.++...|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777788887777 77777777777777777655543
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.52 E-value=19 Score=27.46 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH
Q 010575 60 AVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVG 104 (507)
Q Consensus 60 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 104 (507)
..+.++.+...++.|++......+++|.+.+|+..|.++|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444455555555666666666666666666666666666665543
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.43 E-value=27 Score=26.62 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 010575 294 EALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI 354 (507)
Q Consensus 294 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 354 (507)
+..+-+..+..-.+.|++.....-+++|.+.+|+..|.++|+.++.+. .+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 444555666667788999999999999999999999999999988743 33333455544
No 388
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.39 E-value=78 Score=30.08 Aligned_cols=53 Identities=9% Similarity=-0.050 Sum_probs=26.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHhHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEI--TFIAILSACC--HVGLVELGRRYFNIMKS 339 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 339 (507)
+.+.+++..|..+|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33556666666666666554 333332 2233333322 34455566666665543
No 389
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=73.04 E-value=61 Score=33.14 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCh----------hHHHHHHHHHHHcCChH
Q 010575 228 LGEWIHNYIEQYGLNTI---VPLNNALIDMYAKSGKIGKALQVFENMKN-KSV----------ITWTTMIAGLALHGLGR 293 (507)
Q Consensus 228 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~~ 293 (507)
+-..++.+|.+.--.|+ ..+...++-.|....+++...++.+.+.. ||. ..|...+.---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 33445556655433333 23334455566666777777777666554 221 11222222223456777
Q ss_pred HHHHHHHHHHHC--CCCCCHHH-----HHHH--HHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh------
Q 010575 294 EALDMFSRMERA--RVKPNEIT-----FIAI--LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG------ 358 (507)
Q Consensus 294 ~A~~~~~~m~~~--g~~p~~~~-----~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 358 (507)
+|+...-.|.+. .+.||... |.-+ -+.|...+..+.|...|++.. .+.|...+--.+.-.+.
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhc
Confidence 787777666653 24455432 2211 123455566777888877765 44565433222222222
Q ss_pred ------------------hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 359 ------------------RAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 359 ------------------~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
+.|.+++..++|+- ...+.+-.-.+|+.+|++..+.|.+++|..
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 23333333333221 123344456789999999999999999874
No 390
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.98 E-value=1.3e+02 Score=31.66 Aligned_cols=213 Identities=15% Similarity=0.078 Sum_probs=119.0
Q ss_pred HHhcCChHHHHHHHHhcccC--CCCh-------hhHHHHH-HHHHhcCCHHHHHHHHHhcCC--------CChhHHHHHH
Q 010575 121 YASCKCIYDARKVFDELSLR--VWNV-------AVWNTMV-AGYAKVGDLNNARALFELMTE--------KNVISWTTLI 182 (507)
Q Consensus 121 ~~~~g~~~~A~~~~~~~~~~--~p~~-------~~~~~li-~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~li 182 (507)
.....++++|..++.++... .|+. ..|+.+- ......|+++.|.++-+.... .....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34568899999999887665 1111 2344443 344457888998888776653 3456677788
Q ss_pred HHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHH-----HHHhccCCH--HHHHHHHHHHHHc--C-CC---CchhHHH
Q 010575 183 AGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAAL-----SACAQLGAV--ELGEWIHNYIEQY--G-LN---TIVPLNN 249 (507)
Q Consensus 183 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----~~~~~~~~~--~~a~~~~~~~~~~--~-~~---~~~~~~~ 249 (507)
.+..-.|++++|..+.++..+..-.-+...+..+. ..+...|.. ......+...... + .+ +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88889999999998888776643333444333222 234556632 2222333322221 0 01 1223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc----CC--CCh-h---HHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENM----KN--KSV-I---TWTTMIAGLALHGLGREALDMFSRMERARV----KPNEITFI 315 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~----~~--~~~-~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~----~p~~~~~~ 315 (507)
.+..++.+ ++.+..-...- .. +.. . .+..|+......|+.++|...+.++..... .++..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 33332222211 11 211 1 223577788889999999999998876432 33333333
Q ss_pred HHHH--HHhccCcHHHHHHHHHH
Q 010575 316 AILS--ACCHVGLVELGRRYFNI 336 (507)
Q Consensus 316 ~l~~--~~~~~g~~~~a~~~~~~ 336 (507)
..+. .....|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 3333 23466888777766554
No 391
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.66 E-value=1.2e+02 Score=31.15 Aligned_cols=189 Identities=13% Similarity=0.146 Sum_probs=102.6
Q ss_pred CCcccHHHHHHHHHcCCCchHHHHHHHHHHH-cCCCCC--cccHHHHHHHHH-ccCCcHHHHHHHHHHHHcCCCCcH---
Q 010575 39 PDVYLYNTTIKALCQTDNPLNAVILYNKIQA-SALRPD--NYSFPFVLKAVV-KLSTIELGREIHCQTVGTGLDSDV--- 111 (507)
Q Consensus 39 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~--- 111 (507)
.+...|..||.. |+..++-+.+ ..++|. ..++-.+...+. ...+++.|+..+++.....-.++.
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 455667777764 6666776663 233332 233444555554 677888888888876554322221
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHhcccC--CCCh----hhHHHH-HHHHHhcCCHHHHHHHHHhcCC-----CCh--
Q 010575 112 --HVVAALIQMYASCKCIYDARKVFDELSLR--VWNV----AVWNTM-VAGYAKVGDLNNARALFELMTE-----KNV-- 175 (507)
Q Consensus 112 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~----~~~~~l-i~~~~~~~~~~~A~~~~~~~~~-----~~~-- 175 (507)
.....++..+.+.+... |...+++..+. .... ..+..+ +..+...++...|.+.++.+.. .|.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 12234566777776666 77777775543 1111 122222 2223333788888888877653 222
Q ss_pred hHHHHHHHHH--HhCCChhHHHHHHHHHhHCC---------CCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHH
Q 010575 176 ISWTTLIAGY--AQMDQPNEAITLFRRMQVEN---------VKPDEIAMLAALSAC--AQLGAVELGEWIHNYIE 237 (507)
Q Consensus 176 ~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~ 237 (507)
..+..++.+. .+.+..+++.+.++.+.... -.|-..++..+++.+ ...|+++.+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2333333332 34565677777777663321 123445566666654 45566666666555554
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.32 E-value=88 Score=29.48 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=47.4
Q ss_pred CHHHHHHH---HHHHHHcCCHHHHHHHHHHHhccCCC-CCchHHHHHHHHH-HcCCchHHHHHHHHHHh
Q 010575 378 NAAIWGSL---LAASNIYGDVELGECALQHLIKLEPH-NSGNYAILSNIYA-ILGRWNESGKIRKVMRD 441 (507)
Q Consensus 378 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 441 (507)
|...|.++ +..+.+.|-+..|.++.+-++.++|. ||-.-...++.|+ +.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445444 44677888999999999999999998 8877777777775 56777777777776543
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.31 E-value=57 Score=28.98 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=39.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh-
Q 010575 283 IAGLALHGLGREALDMFSRMERA--RVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR- 359 (507)
Q Consensus 283 ~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 359 (507)
|++++..+++.+++...-+--+. .++| ......|-.|.+.+.+..+.++-..-... .-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 44555555555555443332221 1222 22333333455666666665555555443 111122335544444433
Q ss_pred ----cCCHHHHHHHHh
Q 010575 360 ----AGYLQEAEKLLR 371 (507)
Q Consensus 360 ----~g~~~~A~~~~~ 371 (507)
.|.+++|+++..
T Consensus 167 VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVV 182 (309)
T ss_pred HHhccccHHHHHHHHh
Confidence 466666666653
No 394
>PRK10941 hypothetical protein; Provisional
Probab=72.09 E-value=18 Score=32.18 Aligned_cols=67 Identities=7% Similarity=-0.024 Sum_probs=46.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
+.+-.+|.+.++++.|+++.+.+ ...| ++.-+.--.-.|.+.|.+..|..-++..++..|+++.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34556677778888888877776 3344 3334555555677888888888888888888888765433
No 395
>PRK12798 chemotaxis protein; Reviewed
Probab=71.35 E-value=95 Score=29.48 Aligned_cols=205 Identities=15% Similarity=0.123 Sum_probs=131.0
Q ss_pred cCCHHHHHHHHHhcCC----CChhHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHH
Q 010575 258 SGKIGKALQVFENMKN----KSVITWTTMIAGL-ALHGLGREALDMFSRMERARVKPNE----ITFIAILSACCHVGLVE 328 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~ 328 (507)
.|+.+++.+.+..+.. +....+-.|+.+- ....+..+|+++|++..=. .|.. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888887764 2345666666554 4456889999999886543 3432 34555555677889999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHH-HHHHHHhhc---CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010575 329 LGRRYFNIMKSRYGIEPKIEQYG-CMIDLLGRA---GYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQH 404 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 404 (507)
++..+-.....+|...|-..-|. .+...+.+. -..+.-..++..|.-.--...|..+...-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98888777777665555443332 233333333 34555666666774223455788888888999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHH-----cCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHH
Q 010575 405 LIKLEPHNSGNYAILSNIYAI-----LGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQIL 479 (507)
Q Consensus 405 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 479 (507)
+..+... ...-...+..|.- ..+.+++.+.+..+... ..+|.+.....--
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~------------------------~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRD------------------------KLSERDRALLEAA 337 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh------------------------hCChhhHHHHHHH
Confidence 9887644 3333344444433 34567777776665433 3356666666655
Q ss_pred HHHHHHHHhc
Q 010575 480 CKINGQMKFA 489 (507)
Q Consensus 480 ~~~~~~~~~~ 489 (507)
..+.+++.+.
T Consensus 338 ~~va~~V~~~ 347 (421)
T PRK12798 338 RSVARQVRRA 347 (421)
T ss_pred HHHHHHHhcC
Confidence 6666666554
No 396
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.20 E-value=1.3e+02 Score=31.02 Aligned_cols=210 Identities=9% Similarity=-0.123 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHHcC-CCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHH
Q 010575 224 GAVELGEWIHNYIEQYG-LNTI--VPLNNALIDMYAKSGKIGKALQVFENMKNK--SVITWTTMIAGLALHGLGREALDM 298 (507)
Q Consensus 224 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 298 (507)
.+.+.|..++....... ..+. ..+...+.......+..+++...++..... +......-+......++++.+...
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 34566777776654332 2211 122233332233322244555555554322 333333334444466777777767
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh-----------CCCCC------hh--------HHHHH
Q 010575 299 FSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY-----------GIEPK------IE--------QYGCM 353 (507)
Q Consensus 299 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~------~~--------~~~~l 353 (507)
+..|.... .-...-.--+.+++...|+.++|..+|+.+.... |.++. +. .-..-
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 66664421 2233334455566556677777777776653211 11100 00 00112
Q ss_pred HHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCCCchHHHHHHHHHHcCCch
Q 010575 354 IDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE---PHNSGNYAILSNIYAILGRWN 430 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 430 (507)
+..+...|....|...+..+....+......+.......|.++.++.........+ -..|..|...+..+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34455667777777777666323455555666666667788887777665542211 112334555665666555566
Q ss_pred HHHH
Q 010575 431 ESGK 434 (507)
Q Consensus 431 ~A~~ 434 (507)
.++-
T Consensus 494 ~~lv 497 (644)
T PRK11619 494 QSYA 497 (644)
T ss_pred HHHH
Confidence 5553
No 397
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.86 E-value=24 Score=34.68 Aligned_cols=135 Identities=14% Similarity=0.042 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC--CHHHH
Q 010575 308 KPNEITFIAILSACCHV--GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA--NAAIW 382 (507)
Q Consensus 308 ~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~--~~~~~ 382 (507)
-|+..+...++.-.... ..-+-+-.++..|.+ .+.|--...|...--....|+...|...+..+ ...| ..+..
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 45666655554433322 223445555555543 34443333333222234579999999988877 3334 22345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
..|.....+.|-...|-.++.+.+.+.-..|-++..++.+|....+.+.|++.|+...+...
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 56777788888899999999999998877788999999999999999999999998865433
No 398
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.85 E-value=31 Score=28.41 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=27.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHH
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESG 433 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 433 (507)
+..|.+.|.+++|.+++++..+ +|++...-.-|..+-.+...+...+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~l 164 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVL 164 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHH
Confidence 3457777777777777777776 6665555444444444444443333
No 399
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=70.85 E-value=1.6e+02 Score=31.94 Aligned_cols=160 Identities=10% Similarity=-0.014 Sum_probs=81.9
Q ss_pred HHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHcCCCCc
Q 010575 166 LFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVEL-GEWIHNYIEQYGLNTI 244 (507)
Q Consensus 166 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~ 244 (507)
+...+..+|...-...+.++.+.+..+. +..... .++...-...+.++...+..+. +...+..+.+ .++
T Consensus 719 l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d 788 (897)
T PRK13800 719 FAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPD 788 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCC
Confidence 3344445555555555555555443321 112221 3444555555555555554332 2233333332 345
Q ss_pred hhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010575 245 VPLNNALIDMYAKSGKIGKAL-QVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH 323 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 323 (507)
..+-...+.++.+.|..+.+. .+...+.+++...-...+.++...+. .++...+..+.+ .|+...-...+.++.+
T Consensus 789 ~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 789 PLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhc
Confidence 556666777777777655442 33344445565555556666666654 445555555554 4565555566666666
Q ss_pred cCcHHHHHHHHHHhHH
Q 010575 324 VGLVELGRRYFNIMKS 339 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~ 339 (507)
......+...+..+.+
T Consensus 865 ~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 865 WPGDPAARDALTTALT 880 (897)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 5334455566655554
No 400
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.75 E-value=60 Score=28.16 Aligned_cols=82 Identities=7% Similarity=-0.071 Sum_probs=48.6
Q ss_pred HHhcCCHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHH
Q 010575 255 YAKSGKIGKALQVFENMKN--KSV-ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEI-TFIAILSACCHVGLVELG 330 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a 330 (507)
|....+++.|+..|.+... |.+ .-|+.-+.++.+..+++.+..--++..+. .||.. ....+..+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHH
Confidence 3444566677766665443 433 44566666777777777777666666553 55543 233344455566677777
Q ss_pred HHHHHHhH
Q 010575 331 RRYFNIMK 338 (507)
Q Consensus 331 ~~~~~~~~ 338 (507)
+..+.+..
T Consensus 98 I~~Lqra~ 105 (284)
T KOG4642|consen 98 IKVLQRAY 105 (284)
T ss_pred HHHHHHHH
Confidence 77776663
No 401
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=70.20 E-value=11 Score=33.54 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=39.8
Q ss_pred HhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH
Q 010575 357 LGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI 418 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 418 (507)
..+.|+.++|.++|+.+ ...| ++....-+.......++.-+|-++|-+++.+.|.+..++..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34677778888877765 3344 34445555555555677777777777777777777655443
No 402
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.88 E-value=83 Score=28.22 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=45.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCchhHH
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQ-----YGLNTIVPLN 248 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 248 (507)
+.....|..+|.+.+|.++.+..+.-+ +.+...+-.++..+...|+--.+.+-++.+.+ .|+..+..++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 444567788888888888888877754 45666677777888888876666666555532 3555544443
No 403
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.40 E-value=15 Score=25.38 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=8.3
Q ss_pred HHHHHHHHhhcCCHHHHHH
Q 010575 350 YGCMIDLLGRAGYLQEAEK 368 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~ 368 (507)
+..++.+|+..|++.++++
T Consensus 46 lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 404
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.25 E-value=49 Score=26.18 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=49.3
Q ss_pred HHHHHHHHHHccCChhHHHHHhccCCC---------CCcccHHHHHHHHHcCCC-chHHHHHHHHHHHcCCCCCcccHHH
Q 010575 12 LLSRFIDSCSSLGFSDYAYSIFTHKSK---------PDVYLYNTTIKALCQTDN-PLNAVILYNKIQASALRPDNYSFPF 81 (507)
Q Consensus 12 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ 81 (507)
..|+++.-....+++.....+++.+.. .+-..|++++.+.+...- --.+..+|..|++.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 345566666666667766666666532 344567777777755554 3345667777776666777777777
Q ss_pred HHHHHHcc
Q 010575 82 VLKAVVKL 89 (507)
Q Consensus 82 l~~~~~~~ 89 (507)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77766554
No 405
>PF13934 ELYS: Nuclear pore complex assembly
Probab=68.17 E-value=80 Score=27.38 Aligned_cols=55 Identities=7% Similarity=-0.041 Sum_probs=23.5
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 010575 117 LIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE 172 (507)
Q Consensus 117 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 172 (507)
++.++...|+.+.|..++........+......++.. ..++.+.+|...-+...+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCch
Confidence 4444555555555555555443322122222222222 334455555554444443
No 406
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=68.02 E-value=1e+02 Score=28.51 Aligned_cols=152 Identities=8% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC------------HHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcC
Q 010575 328 ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY------------LQEAEKLLRRM--PFEANAAIWGSLLAASNIYG 393 (507)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g 393 (507)
.+..++=+.+.+. +-|+.+|-.++..--..-. .+.-+.+++++ ....+...+..++..+.+..
T Consensus 3 ~r~~el~~~v~~~---P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 3 KRTAELNRRVREN---PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW 79 (321)
T ss_pred hHHHHHHHHHHhC---cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHH---cCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCC
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAI---LGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHP 470 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (507)
+.++..+-+++++...|+++..|...++.... .-.+++...+|.+....-.....+. .......-.
T Consensus 80 ~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~-----------~~~~~~~~~ 148 (321)
T PF08424_consen 80 DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR-----------MTSHPDLPE 148 (321)
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc-----------cccccchhh
Q ss_pred ChHHHHHHHHHHHHHHHhcCccc
Q 010575 471 DFDRLYQILCKINGQMKFAEHLQ 493 (507)
Q Consensus 471 ~~~~~~~~l~~~~~~~~~~g~~~ 493 (507)
-......++-+....+.++||.+
T Consensus 149 ~e~~~l~v~~r~~~fl~~aG~~E 171 (321)
T PF08424_consen 149 LEEFMLYVFLRLCRFLRQAGYTE 171 (321)
T ss_pred HHHHHHHHHHHHHHHHHHCCchH
No 407
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.84 E-value=1.7e+02 Score=31.11 Aligned_cols=221 Identities=10% Similarity=0.037 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHH---cCCCCCcccHHHHHHH
Q 010575 9 NNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQA---SALRPDNYSFPFVLKA 85 (507)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~ 85 (507)
|+.+...++..=.....+++...++++-.+ |..|+..|...|+.++|+++|.+... ..-.--...+..+++.
T Consensus 477 n~~~v~~llrlen~~c~vee~e~~L~k~~~-----y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~Y 551 (877)
T KOG2063|consen 477 NPGLVGPLLRLENNHCDVEEIETVLKKSKK-----YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEY 551 (877)
T ss_pred CchhhhhhhhccCCCcchHHHHHHHHhccc-----HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHH
Q ss_pred HHccCCc--HHHHHHHHHHHHcCCCCcHHHHHH------------HHHHHHhcCChHHHHHHHHhcccC--CCChhhHHH
Q 010575 86 VVKLSTI--ELGREIHCQTVGTGLDSDVHVVAA------------LIQMYASCKCIYDARKVFDELSLR--VWNVAVWNT 149 (507)
Q Consensus 86 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 149 (507)
+-+.+.. +-+++.-++..+..+..-..++.. -+-.|......+-+...++.+... .++....+.
T Consensus 552 L~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ 631 (877)
T KOG2063|consen 552 LKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTV 631 (877)
T ss_pred HHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHH
Q ss_pred HHHHHHhcCC-----------------HHHHHHHHHhcCC----------CChhHHHHHHHHHHhCCChhHHHHHHHHHh
Q 010575 150 MVAGYAKVGD-----------------LNNARALFELMTE----------KNVISWTTLIAGYAQMDQPNEAITLFRRMQ 202 (507)
Q Consensus 150 li~~~~~~~~-----------------~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 202 (507)
++..|+..=+ .+.....++.-.. +....|....-.+.+.|+.++|+.++-..+
T Consensus 632 ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 632 LLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred HHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010575 203 VENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYA 256 (507)
Q Consensus 203 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (507)
. +++.|..+....-+ ...++...|..++..|.
T Consensus 712 ~---------------------d~~~A~~Yc~~~y~-~~~~~~~~y~~lL~~~l 743 (877)
T KOG2063|consen 712 D---------------------DIDAAESYCLPQYE-SDKTNKEIYLTLLRIYL 743 (877)
T ss_pred c---------------------chhHHHHHHHHhcc-CCCcccHHHHHHHHHHh
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.53 E-value=25 Score=29.55 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 010575 376 EANAAIWGSLLAASNIYGDVELGECALQHLIKLEP 410 (507)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 410 (507)
.|++.++..++.++...|+.++|.+..+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555555555555555555555555555555
No 409
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.36 E-value=44 Score=24.93 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=15.8
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQA 69 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 69 (507)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355566666666666666666655544
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=67.11 E-value=26 Score=29.46 Aligned_cols=51 Identities=20% Similarity=0.106 Sum_probs=33.9
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
...+.+......+.+.+.....|++.+|..++.++...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555555444444443355678888888888888888888887777776
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.92 E-value=23 Score=25.55 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 383 GSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
..+.......|+.++|...+++++++.
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345556778899999999999987654
No 412
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.43 E-value=48 Score=31.54 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=11.2
Q ss_pred HHHHHhhcCCHHHHHHHHhhC
Q 010575 353 MIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~ 373 (507)
|++..+-.|++..|+++++.+
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc
Confidence 334444556666666555554
No 413
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=66.39 E-value=31 Score=27.39 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 010575 62 ILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC 126 (507)
Q Consensus 62 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (507)
++.+.+++.|+++++.- ..++..+...++.-.|.++++.+.+.++..+..|.-.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34455666777666543 34667777777778888888888887777666665555666666653
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.21 E-value=38 Score=23.95 Aligned_cols=62 Identities=8% Similarity=0.085 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCH
Q 010575 95 GREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDL 160 (507)
Q Consensus 95 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 160 (507)
+.++++.+.+.|+- +..-...+-.+-...|+.+.|.++++.+. + ....|..++.++-..|.-
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r--g~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q--KEGWFSKFLQALRETEHH 82 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c--CCcHHHHHHHHHHHcCch
Confidence 34555555555532 22222222222223455666666666666 5 223344444444444443
No 415
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.85 E-value=1.4e+02 Score=28.80 Aligned_cols=208 Identities=10% Similarity=-0.052 Sum_probs=107.6
Q ss_pred HHHcCCCchHHHHHHHHHHHcCCCCCccc--HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhcC
Q 010575 50 ALCQTDNPLNAVILYNKIQASALRPDNYS--FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVH--VVAALIQMYASCK 125 (507)
Q Consensus 50 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 125 (507)
..++.|+.+-+ +.+.+.|..|+... -.+.+..++..|+.+- .+.+.+.|..|+.. .....+...+..|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 33556666544 44445676665432 3345555567777654 44555666554432 1223455667789
Q ss_pred ChHHHHHHHHhcccC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHhCCChhHHHHHHHHH
Q 010575 126 CIYDARKVFDELSLR-VWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNV---ISWTTLIAGYAQMDQPNEAITLFRRM 201 (507)
Q Consensus 126 ~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m 201 (507)
+.+.+..+++.-... ......-.+.+...+..|+.+-+..+++.-..++. .-. +.+...+..|+.+-+..++
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~-tpLh~A~~~~~~~~v~~Ll--- 155 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKF-SPLHLAVMMGDIKGIELLI--- 155 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH---
Confidence 988887777643221 00001122345556677888777777776544322 122 2334445667765544433
Q ss_pred hHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhH---HHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 010575 202 QVENVKPD---EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL---NNALIDMYAKSGKIGKALQVFENMKNKS 275 (507)
Q Consensus 202 ~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 275 (507)
+.|..++ ....+.+ ...+..|+.+- .+.+.+.|..++... ..+.+...+..|+.+-+.-+++.-..++
T Consensus 156 -~~g~~~~~~d~~g~TpL-~~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n 229 (413)
T PHA02875 156 -DHKACLDIEDCCGCTPL-IIAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229 (413)
T ss_pred -hcCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence 4443322 1222223 23344566554 444556665554321 1245555567788877777776544443
No 416
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=63.68 E-value=13 Score=31.78 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=35.8
Q ss_pred hhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 358 GRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.+.|+.+.|.+++.++ ...| ....|-.+.....+.|+.+.|.+.+++.++++|++.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4456666666666665 3223 445666666666777777777777777777776653
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.52 E-value=11 Score=29.08 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=24.5
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 010575 52 CQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAV 86 (507)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 86 (507)
-..|.-.+|..+|..|+.+|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446677889999999998887764 67777653
No 418
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=63.03 E-value=26 Score=19.90 Aligned_cols=17 Identities=12% Similarity=-0.150 Sum_probs=7.9
Q ss_pred HHHHHHHcCCHHHHHHH
Q 010575 385 LLAASNIYGDVELGECA 401 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~ 401 (507)
+...+...|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 34444455555555555
No 419
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=62.82 E-value=1.2e+02 Score=27.43 Aligned_cols=77 Identities=12% Similarity=-0.036 Sum_probs=41.5
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC-------------
Q 010575 365 EAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG------------- 427 (507)
Q Consensus 365 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 427 (507)
.|...|.++-..-++.....+...|.. ..+.++|...|+++-+.+. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 566666655222244444444433322 2366777777777766555 34444555 555544
Q ss_pred --CchHHHHHHHHHHhCCC
Q 010575 428 --RWNESGKIRKVMRDMGV 444 (507)
Q Consensus 428 --~~~~A~~~~~~~~~~~~ 444 (507)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 66666777766654443
No 420
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=62.57 E-value=14 Score=33.04 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=38.2
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA 377 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 377 (507)
..+.|+.++|..+|+.+.. +.| ++.....+........++-+|..+|-++ .+.|
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 3478999999999999885 344 4555555555555667778888887766 4555
No 421
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=62.02 E-value=68 Score=24.36 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=13.0
Q ss_pred HHHHHHcCCchHHHHHHHHH
Q 010575 420 SNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 420 ~~~~~~~g~~~~A~~~~~~~ 439 (507)
+.++...|+.++|+..|++.
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 44566677888887777654
No 422
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.98 E-value=1.2e+02 Score=27.16 Aligned_cols=92 Identities=11% Similarity=0.009 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHH----HhHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHHHHc----CCCCchhHHH
Q 010575 179 TTLIAGYAQMDQPNEAITLFRR----MQVENVKPDEIAMLAA-LSACAQLGAVELGEWIHNYIEQY----GLNTIVPLNN 249 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 249 (507)
.-++..+.+.|.+.+|+.+... +.+.+-+|+..+...+ -.+|-...++.++..-+...... -+||....--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 3477888889999988876544 3444445554433222 12344444444444433333321 1233333333
Q ss_pred HHHHH--HHhcCCHHHHHHHHHh
Q 010575 250 ALIDM--YAKSGKIGKALQVFEN 270 (507)
Q Consensus 250 ~l~~~--~~~~~~~~~A~~~~~~ 270 (507)
-|+++ .|...++..|...|-+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~E 231 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIE 231 (421)
T ss_pred HHhccceeeccccchhHHHHHHH
Confidence 33332 2333455555555544
No 423
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.25 E-value=69 Score=23.88 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467788888888888888888888776
No 424
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=59.95 E-value=1.4e+02 Score=27.16 Aligned_cols=77 Identities=9% Similarity=0.114 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHh----------cCCHHHHHH
Q 010575 96 REIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAK----------VGDLNNARA 165 (507)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----------~~~~~~A~~ 165 (507)
.++|+.+...++.|.-..+.-+.-.+.+.=.+.+.+.+++.+.. |..-+..++..||. .|++....+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s---D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmk 339 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS---DPQRFDFLLYICCSMLILVRERILEGDFTVNMK 339 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc---ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 36677777777788777777777777777777888888887766 33345555555543 455555555
Q ss_pred HHHhcCCCCh
Q 010575 166 LFELMTEKNV 175 (507)
Q Consensus 166 ~~~~~~~~~~ 175 (507)
+++.-+..|.
T Consensus 340 LLQ~yp~tdi 349 (370)
T KOG4567|consen 340 LLQNYPTTDI 349 (370)
T ss_pred HHhcCCCCCH
Confidence 5554444333
No 425
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.67 E-value=62 Score=23.14 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHHcCCch
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH--NSGNYAILSNIYAILGRWN 430 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 430 (507)
|...-..+...+...|+++.|++.+-.+++.+|+ +...-..|+.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 5566677777888888888888888888887766 3556677777777777754
No 426
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=58.80 E-value=25 Score=31.59 Aligned_cols=79 Identities=5% Similarity=0.038 Sum_probs=51.3
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 010575 343 IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGS-LLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 419 (507)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 419 (507)
...|+..|...+.-..+.|.+.+...+|.+. ...| |+..|.. ...-+...++++.+..+|.+.++.+|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3445555655555555556666666666655 3333 4444543 22235667899999999999999999999988755
Q ss_pred HH
Q 010575 420 SN 421 (507)
Q Consensus 420 ~~ 421 (507)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 427
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=58.35 E-value=34 Score=30.24 Aligned_cols=57 Identities=23% Similarity=0.119 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 384 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+=.++...++++.|..+.++.+.++|+++.-...-+.+|.+.|...-|++-++...
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~ 242 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV 242 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH
Confidence 344467888999999999999999999999888999999999999999998887754
No 428
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.38 E-value=1.6e+02 Score=27.05 Aligned_cols=292 Identities=11% Similarity=0.006 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010575 158 GDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 158 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 237 (507)
++.+....+++.+.+.+...|...+.. ...++.|..-++.+..+ +...+++-.+..+...
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce------------------~~~i~~D~~~l~~m~~~--neeki~eld~~iedae 95 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCE------------------SLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAE 95 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHh------------------hcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHH
Q ss_pred Hc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 010575 238 QY-GLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSV---------ITWTTMIAGLALHGLGREALDMFSRMERARV 307 (507)
Q Consensus 238 ~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 307 (507)
+. |-.--...+......||+.|+.+.|.+.+....++++ .+--.+.-.|..+.-..+-++..+.+.+.|-
T Consensus 96 enlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 96 ENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Q ss_pred CCCHHHHHHHHHH--HhccCcHHHHHHHHHHhHHhhC----CCCChhHHHHHHHHHhhcCCHHHHHHHHhhC---CCCCC
Q 010575 308 KPNEITFIAILSA--CCHVGLVELGRRYFNIMKSRYG----IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM---PFEAN 378 (507)
Q Consensus 308 ~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~ 378 (507)
..+..---..-.+ |....++.+|-.+|-.....+. .+-.......++.+.....+.+-=.++++.- ..-+.
T Consensus 176 DWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dlktKVi~~~Evl~vl~~ 255 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDLKTKVIKCPEVLEVLHK 255 (393)
T ss_pred ChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchHHhhhcCcHHHHHHhhc
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-HhccCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEEC
Q 010575 379 AAIWGSLLAASNIYGDVELGECALQH-LIKLEPH-NSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVS 456 (507)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 456 (507)
......++..+....--.--..+..- ...+.++ -...+..+-.--.+..-+.+-++-++.+.-......-|.+...++
T Consensus 256 l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLESYrsl~l~~MA~aFgVSVefiD 335 (393)
T KOG0687|consen 256 LPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLESYRSLTLESMAKAFGVSVEFID 335 (393)
T ss_pred CchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Q ss_pred CEEEEEEeCCCCC
Q 010575 457 KRVHEFVAGDTSH 469 (507)
Q Consensus 457 ~~~~~~~~~~~~~ 469 (507)
+++++||...+.|
T Consensus 336 reL~rFI~~grL~ 348 (393)
T KOG0687|consen 336 RELGRFIAAGRLH 348 (393)
T ss_pred hHHHHhhccCcee
No 429
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=56.70 E-value=1.6e+02 Score=26.81 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=52.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----------cCCHHH
Q 010575 296 LDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----------AGYLQE 365 (507)
Q Consensus 296 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~ 365 (507)
.++++.|...++.|.-..|..+.-.+.+.=.+...+.+|+.+... +.-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467788888888888888877777777777788888888888753 2235555555542 577777
Q ss_pred HHHHHhhCC
Q 010575 366 AEKLLRRMP 374 (507)
Q Consensus 366 A~~~~~~~~ 374 (507)
-+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777777664
No 430
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=56.61 E-value=29 Score=33.59 Aligned_cols=146 Identities=12% Similarity=0.127 Sum_probs=70.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--------CCCchHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEP--------HNSGNYA 417 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--------~~~~~~~ 417 (507)
++..|-..+.-|...+++++|.++.+-.+ +...|.++........+..-++..|..+.+++. +-+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 34445556666666777777777666553 344555555544444444444444433322211 0112233
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCC-ChHHHHHHHHHHHHHHHhcCcccCCC
Q 010575 418 ILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHP-DFDRLYQILCKINGQMKFAEHLQNEF 496 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~g~~~~~~ 496 (507)
.++....-.|+..||.-++.+-. ..- --+.++..++.|-....... ..+-+-..+..-.+.++..|.+.-.+
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl~~g---l~~----qav~lni~m~nW~RALEl~~K~K~~v~~Vl~yR~KyLk~~g~~Etdp 721 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILLHGG---LIE----QAVGLNIRMHNWRRALELSQKHKELVPRVLQYRRKYLKALGREETDP 721 (737)
T ss_pred HHHHHHHHhccchhhhHHHHhcc---hHH----HhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 44445555666666666554321 000 00011111222222111111 11233456777788899999888777
Q ss_pred ccccc
Q 010575 497 SGVLE 501 (507)
Q Consensus 497 ~~~~~ 501 (507)
..+|.
T Consensus 722 lyL~~ 726 (737)
T KOG1524|consen 722 LYLPL 726 (737)
T ss_pred hhhhh
Confidence 76653
No 431
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=56.02 E-value=28 Score=19.21 Aligned_cols=26 Identities=8% Similarity=0.296 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILS 420 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 420 (507)
.++.|..+|++.+...|+ +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 467888888888887776 66666554
No 432
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.45 E-value=90 Score=25.85 Aligned_cols=48 Identities=8% Similarity=-0.056 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhcCChHHHHHHHHhccc
Q 010575 92 IELGREIHCQTVGTGLDSDV-------HVVAALIQMYASCKCIYDARKVFDELSL 139 (507)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 139 (507)
++.|+.+|+.+.+.-..|.. .+-...+-.|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45677777766654322210 1112234456777777777777777665
No 433
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.86 E-value=24 Score=33.70 Aligned_cols=103 Identities=15% Similarity=0.037 Sum_probs=61.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhc
Q 010575 283 IAGLALHGLGREALDMFSRMERARVKPNEITFI-AILSACCHVGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRA 360 (507)
Q Consensus 283 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 360 (507)
+..+...+.++.|..++.+.++. .||-..|. .=..++.+.+++..|+.=+..+.+. .|+ ...|..=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 34455667788888888887774 56544333 3336677778887777766666643 233 22233333444555
Q ss_pred CCHHHHHHHHhhC-CCCCCHHHHHHHHHHHH
Q 010575 361 GYLQEAEKLLRRM-PFEANAAIWGSLLAASN 390 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~ 390 (507)
+.+.+|...|+.. .+.|+..-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 6666777766666 56676666666655553
No 434
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=54.64 E-value=67 Score=22.43 Aligned_cols=80 Identities=10% Similarity=0.065 Sum_probs=36.1
Q ss_pred HHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcc---cHHHHHHHHHccCCcHHHH
Q 010575 20 CSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNY---SFPFVLKAVVKLSTIELGR 96 (507)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~ 96 (507)
.++.|+++-...+++.-...+. -+..+...+..|+. ++++.+.+.|..++.. -++.+.. .+..|+.
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~---- 72 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGNL---- 72 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHH----
T ss_pred HHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCCH----
Confidence 4566666666666664433333 22234444555553 3444444455555433 2222222 3334432
Q ss_pred HHHHHHHHcCCCCc
Q 010575 97 EIHCQTVGTGLDSD 110 (507)
Q Consensus 97 ~~~~~~~~~~~~~~ 110 (507)
++++.+.+.|..++
T Consensus 73 ~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 73 EIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHHTTT-TT
T ss_pred HHHHHHHHcCCCCC
Confidence 34455555555544
No 435
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.62 E-value=1.4e+02 Score=25.83 Aligned_cols=70 Identities=23% Similarity=0.193 Sum_probs=31.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASN 390 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 390 (507)
++.++...|+...|..+++.... ...+......++.. ..++.+.+|..+-+.....-....+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 44455555666666666555431 11122222222222 445566666666555532212334444444443
No 436
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=54.59 E-value=2.1e+02 Score=27.59 Aligned_cols=328 Identities=13% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 010575 45 NTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASC 124 (507)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (507)
|-++..|...|+..+|.+..+++.. +.+....+-+++...+.-..+....-.+.+.+...+...-..+.+++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhh
Q ss_pred CC--------hHHHHHHHHhcccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHH
Q 010575 125 KC--------IYDARKVFDELSLRVW--NVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEA 194 (507)
Q Consensus 125 g~--------~~~A~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 194 (507)
+. +..|...|+.+..+.| +...-+++-..-...|+.+. .+.|+ .....+|+-|...|+..+.
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fk-------k~~~~IIqEYFlsgDt~Ev 364 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFK-------KDLTPIIQEYFLSGDTPEV 364 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHH-------HhhHHHHHHHHhcCChHHH
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-------------H
Q 010575 195 ITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK-------------I 261 (507)
Q Consensus 195 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~ 261 (507)
.+.++.+-.....|-...+..-+ ++-+.++-.+...++-.-....+-++..+-+.+...+-...+ .
T Consensus 365 i~~L~DLn~~E~~~~f~k~lITL-AldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~elal 443 (645)
T KOG0403|consen 365 IRSLRDLNLPEYNPGFLKLLITL-ALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQELAL 443 (645)
T ss_pred HHHHHHcCCccccchHHHHHHHH-HhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHHHHHH
Q ss_pred HHHHHHHHhcCCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 262 GKALQVFENMKNK-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 262 ~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
=-|+.+.+.+..| +...+..-+..-......-+--..+-.|...|-+ +++++..-|--.....+-+++..
T Consensus 444 FlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeR--------llr~WGgGG~g~sVed~kdkI~~- 514 (645)
T KOG0403|consen 444 FLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGER--------LLRVWGGGGGGWSVEDAKDKIDM- 514 (645)
T ss_pred HHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccc--------hhheecCCCCcchHHHHHHHHHH-
Q ss_pred hCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010575 341 YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
|+.-|...|+..+|...++++ |.-.....+.+++.+..+.|+-+.-..+++..++
T Consensus 515 ------------LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 515 ------------LLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred ------------HHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=54.16 E-value=1.4e+02 Score=25.78 Aligned_cols=92 Identities=16% Similarity=0.188 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKP---NEITF--IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGC 352 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 352 (507)
-.|.|+--|.-+..+.+|-+.|.. +.|+.| |..++ ..-|......|+.+.|++....+... -+..|...+..
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 344555555555555555555543 233333 22222 23444556667777777666665433 33333322222
Q ss_pred HHH----HHhhcCCHHHHHHHHhh
Q 010575 353 MID----LLGRAGYLQEAEKLLRR 372 (507)
Q Consensus 353 l~~----~~~~~g~~~~A~~~~~~ 372 (507)
|.. -+.+.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 221 13466677777776654
No 438
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=53.45 E-value=1.7e+02 Score=26.34 Aligned_cols=157 Identities=8% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHH-----hcC
Q 010575 97 EIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFE-----LMT 171 (507)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~-----~~~ 171 (507)
.+|--=...|.+++..-+..+++.....-...+... |..+.+. ...+.+|+++|+ +-.
T Consensus 98 DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~-Y~~LVk~----------------N~~Vv~aL~L~~~~~~~~~I 160 (292)
T PF13929_consen 98 DYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFN-YWDLVKR----------------NKIVVEALKLYDGLNPDESI 160 (292)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchH-HHHHHHh----------------hHHHHHHHHHhhccCcccce
Q ss_pred CCChhHHHHHHHHHHh-CCChhHHHHHHHHHhHCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchhH
Q 010575 172 EKNVISWTTLIAGYAQ-MDQPNEAITLFRRMQVEN--VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIVPL 247 (507)
Q Consensus 172 ~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~ 247 (507)
-.|......+++.... .+..-.|.--+-...... ..++..+...++..++..+++..-.+++...... +...|...
T Consensus 161 i~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rp 240 (292)
T PF13929_consen 161 IFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRP 240 (292)
T ss_pred eeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCch
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 010575 248 NNALIDMYAKSGKIGKALQVFEN 270 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~A~~~~~~ 270 (507)
|..+|......|+..-..++..+
T Consensus 241 W~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 241 WAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHHHcCCHHHHHHHhhC
No 439
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.57 E-value=1.7e+02 Score=26.05 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
-++.....+...|.+.|++.+|+..|-.-.+++...+..++......|...++ +...- ..+--|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~-RaVL~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIA-RAVLQYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHH-HHHHHHH
Confidence 35667778888999999999998887655444333332233222222222221 11122 2223345
Q ss_pred ccCcHHHHHHHHHHhHHh
Q 010575 323 HVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~ 340 (507)
..++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888877776654
No 440
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.46 E-value=1.9e+02 Score=26.56 Aligned_cols=111 Identities=16% Similarity=-0.023 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhHHhhCC---CCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010575 327 VELGRRYFNIMKSRYGI---EPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQ 403 (507)
Q Consensus 327 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 403 (507)
.+.|.+.|+.......- ..++.....+.....+.|..+.-..+++.....++...-..++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56778888888763111 345666667777778888877766666666555678888889999988999999999999
Q ss_pred HHhccC-CCCCchHHHHHHHHHHcCCc--hHHHHHHHH
Q 010575 404 HLIKLE-PHNSGNYAILSNIYAILGRW--NESGKIRKV 438 (507)
Q Consensus 404 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~ 438 (507)
.++.-+ -........+. .+...+.. +.+.+++..
T Consensus 226 ~~l~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLA-GLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHCTSTS-TTTHHHHHH-HHH-CSTTCHHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHH-HHhcCChhhHHHHHHHHHH
Confidence 998743 22233334443 44433433 556555533
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=51.61 E-value=1.4e+02 Score=24.92 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=21.2
Q ss_pred cCCCCCcccHHHHHHHHHccC----CcHHHHHHHHHHHHcCCCC
Q 010575 70 SALRPDNYSFPFVLKAVVKLS----TIELGREIHCQTVGTGLDS 109 (507)
Q Consensus 70 ~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~ 109 (507)
.|..+++..++.++..+.+.. ..+.+..+-.+....++.+
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~ 45 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKK 45 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCc
Confidence 356667777777776665433 3444444444444444443
No 442
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=51.39 E-value=2.6e+02 Score=27.81 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC--Chh---HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNK--SVI---TWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
.++.-|.+.+++++|..++..|.=. ... +.+.+...+.+..--++....++.+..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 5677788888888888888887632 222 233334444444434444444444443
No 443
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.00 E-value=1.1e+02 Score=23.51 Aligned_cols=81 Identities=10% Similarity=0.067 Sum_probs=48.9
Q ss_pred cCCCchHHHHHHHHHHHc-----CCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCC
Q 010575 53 QTDNPLNAVILYNKIQAS-----ALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDS-DVHVVAALIQMYASCKC 126 (507)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 126 (507)
..+.-.....++++..+. ...-|+. |..+--.|++. .+.+.++|..|...|+.. ....|......+...|+
T Consensus 38 ~~~~~~~L~~lLer~~~~f~~~~~Y~nD~R-ylkiWi~ya~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~ 114 (126)
T PF08311_consen 38 SGGKQSGLLELLERCIRKFKDDERYKNDER-YLKIWIKYADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGN 114 (126)
T ss_dssp TCCCCHHHHHHHHHHHHHHTTSGGGTT-HH-HHHHHHHHHTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-
T ss_pred CCCchhHHHHHHHHHHHHHhhhHhhcCCHH-HHHHHHHHHHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCC
Confidence 335555666677666543 1112222 22222223332 338888999998887643 45677888888888899
Q ss_pred hHHHHHHHHh
Q 010575 127 IYDARKVFDE 136 (507)
Q Consensus 127 ~~~A~~~~~~ 136 (507)
+++|.++|..
T Consensus 115 ~~~A~~I~~~ 124 (126)
T PF08311_consen 115 FKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999888864
No 444
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=50.98 E-value=1e+02 Score=22.94 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
..++|..+.+.+...+. ....+--.-+..+.+.|++++|...=.....||...|-+| +-.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHHHh
Confidence 45666666666666553 2333333445556777888888444444445677777554 33566777777777777665
Q ss_pred CC
Q 010575 305 AR 306 (507)
Q Consensus 305 ~g 306 (507)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 445
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.86 E-value=2.7e+02 Score=27.86 Aligned_cols=114 Identities=15% Similarity=0.036 Sum_probs=62.2
Q ss_pred cCChHHHHHHHHhcccC------------CC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcC-------CC----------
Q 010575 124 CKCIYDARKVFDELSLR------------VW-NVAVWNTMVAGYAKVGDLNNARALFELMT-------EK---------- 173 (507)
Q Consensus 124 ~g~~~~A~~~~~~~~~~------------~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~-------~~---------- 173 (507)
...+++|...|.-.... .| .+.+.-.+...+-..|+.+.|..+.++.. .|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34456666666544333 12 33444555566777777776666655433 11
Q ss_pred -------ChhHHHH---HHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHH
Q 010575 174 -------NVISWTT---LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACA-QLGAVELGEWIHNYIE 237 (507)
Q Consensus 174 -------~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~ 237 (507)
|-..|-+ -|..+.+.|.+..|+++.+.+......-|+.....+|+.|+ +..+++=-+.+++...
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1112222 23455667778888877777776554445666666666653 4445555555555543
No 446
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=50.62 E-value=66 Score=24.75 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHHHHHHh--ccCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010575 398 GECALQHLI--KLEPHNSGNYAILSNIYAILGRWNESGKIRK 437 (507)
Q Consensus 398 A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 437 (507)
...+|..+. +++-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666664 3555566778888888888888888888875
No 447
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.24 E-value=34 Score=22.35 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=9.2
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 010575 282 MIAGLALHGLGREALDMFSRM 302 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m 302 (507)
+|.+|...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 448
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=50.16 E-value=3.7e+02 Score=29.24 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=78.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------C--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 010575 244 IVPLNNALIDMYAKSGKIGKALQVFENMKNK--------S--------VITWTTMIAGLALHGLGREALDMFSRMERARV 307 (507)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~--------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 307 (507)
+........-+.+..|+++-+......+.+. + ...|-.-+.++.....++++.+.+.. .
T Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 761 (932)
T PRK13184 687 DYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN-----T 761 (932)
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh-----C
Confidence 3344444455567788888777666555421 1 11232334445555556666553332 2
Q ss_pred CCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHhhCCCC--CCHHH
Q 010575 308 KPNEI--TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK--IEQYGCMIDLLGRAGYLQEAEKLLRRMPFE--ANAAI 381 (507)
Q Consensus 308 ~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 381 (507)
+|... .+..++.-+.-.++.+...++.+.+... -.+.. ......-+.+|.-..++++|-+++...+.. .+..+
T Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 840 (932)
T PRK13184 762 DPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDY-VSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYS 840 (932)
T ss_pred CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhc-cCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccc
Confidence 33332 2333333333334444444444444321 11111 122234566777788888888888776321 12333
Q ss_pred HHHHHHHH--HHcCCHHHHHHHHHHHhc
Q 010575 382 WGSLLAAS--NIYGDVELGECALQHLIK 407 (507)
Q Consensus 382 ~~~l~~~~--~~~g~~~~A~~~~~~~~~ 407 (507)
...++.+| .-.++.+-|...|....+
T Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 841 EAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred hHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 33444444 445666777777776653
No 449
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.78 E-value=2.2e+02 Score=26.56 Aligned_cols=128 Identities=9% Similarity=0.030 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCc----ccHHHHH
Q 010575 8 QNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDN----YSFPFVL 83 (507)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~ 83 (507)
|++.+.-.++.-|....+.+..+.+-.. =..+++.+-.++.+.+.+...+++..+.... ..|.. .....++
T Consensus 73 ~~~~~li~~~~~FV~~~n~eqlr~as~~----f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~ 147 (422)
T KOG2582|consen 73 PDPETLIELLNDFVDENNGEQLRLASEI----FFPLCHDLTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLL 147 (422)
T ss_pred CCHHHHHHHHHHHHHhcChHHHhhHHHH----HHHHHHHHHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHH
Confidence 5566666666666555443332221111 0134666667777777776655555554432 22222 1233455
Q ss_pred HHHHccCCcHHHHHHHHHHHH----cCCCCcHHH-HHHHH---HHHHhcCChHHHHHHHHhcccC
Q 010575 84 KAVVKLSTIELGREIHCQTVG----TGLDSDVHV-VAALI---QMYASCKCIYDARKVFDELSLR 140 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~-~~~l~---~~~~~~g~~~~A~~~~~~~~~~ 140 (507)
..|.+.+++..+...++.-+- .+...+... +..+. -.|....+++.|+-+|......
T Consensus 148 ~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 148 QLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred HHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 566666666655544432211 111111111 11111 1133457888888888877654
No 450
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.66 E-value=59 Score=19.89 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=22.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILS 319 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 319 (507)
..+.|-.+++...+++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777766666665554
No 451
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.59 E-value=18 Score=32.93 Aligned_cols=86 Identities=14% Similarity=0.012 Sum_probs=44.3
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHH-HHHHHHHHHHHcCCHHHHHH
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAA-IWGSLLAASNIYGDVELGEC 400 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~ 400 (507)
..|.++.|++.|...+. --++....|..-.+++.+.++...|++-++.. .+.||.. .|-.=..+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34556666666665554 22333444444455555666666666555544 3344332 23333334445566666666
Q ss_pred HHHHHhccCC
Q 010575 401 ALQHLIKLEP 410 (507)
Q Consensus 401 ~~~~~~~~~p 410 (507)
.+..+.+++-
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 6666655443
No 452
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=49.48 E-value=80 Score=22.24 Aligned_cols=30 Identities=10% Similarity=0.239 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhCC
Q 010575 160 LNNARALFELMTEKNVISWTTLIAGYAQMD 189 (507)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 189 (507)
.+++.++++.++.+++.+|..+..++-..|
T Consensus 46 ~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 46 RDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 333444444444444444444444444433
No 453
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.15 E-value=38 Score=30.45 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAI 317 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 317 (507)
.-|+..|....+.|++++|+.++++..+.|..--..+|..-
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 35678888888888999999999988888876555555443
No 454
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.83 E-value=23 Score=27.36 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=24.4
Q ss_pred HHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 010575 185 YAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSA 219 (507)
Q Consensus 185 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 219 (507)
.-..|.-..|..+|+.|++.|-+||. ++.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34456677899999999999988885 4555543
No 455
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=48.68 E-value=2.1e+02 Score=25.94 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhcCcccCCCc
Q 010575 473 DRLYQILCKINGQMKFAEHLQNEFS 497 (507)
Q Consensus 473 ~~~~~~l~~~~~~~~~~g~~~~~~~ 497 (507)
.....++.+..++.+.+|..|+...
T Consensus 158 SRLlaLlGQaLKWQqHQGLLPPGt~ 182 (508)
T KOG0275|consen 158 SRLLALLGQALKWQQHQGLLPPGTT 182 (508)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCCce
Confidence 4678888999999999998886544
No 456
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.42 E-value=1.9e+02 Score=25.38 Aligned_cols=68 Identities=12% Similarity=0.021 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
.+..+.+++...|++-++++.-.++ ... .|...|-.=..+....-+.++|..-|..+++++|.-..+.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 3444566677778888887777666 323 3666777777788888899999999999999998844433
No 457
>PRK09462 fur ferric uptake regulator; Provisional
Probab=47.85 E-value=98 Score=24.63 Aligned_cols=61 Identities=7% Similarity=0.144 Sum_probs=37.8
Q ss_pred HHHHcCCCCCcccHHHHHHHHHcc-CCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 66 KIQASALRPDNYSFPFVLKAVVKL-STIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 66 ~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
.+.+.|+.++..-. .++..+... +..-.|.++++.+.+.++..+..|...-++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34555666555432 344444443 45677888888888777766666666666777766643
No 458
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.67 E-value=73 Score=28.09 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=7.7
Q ss_pred HHhccCcHHHHHHHHHHh
Q 010575 320 ACCHVGLVELGRRYFNIM 337 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~ 337 (507)
.|...|++++|.++|+.+
T Consensus 187 ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 344444444444444444
No 459
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.78 E-value=2e+02 Score=28.75 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=59.7
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHH-ccCCcHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHh
Q 010575 48 IKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVV-KLSTIELGREIHCQTVGTG---LDSDVHVVAALIQMYAS 123 (507)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 123 (507)
|..+.+.|.+..|++.-+.+.+-...-|+.....+|..|+ +..+++-..++++...... .-||...-.+|+..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4567788999999988888877443335666777777774 6777777777777664432 34565555566666666
Q ss_pred cCC---hHHHHHHHHhcccC
Q 010575 124 CKC---IYDARKVFDELSLR 140 (507)
Q Consensus 124 ~g~---~~~A~~~~~~~~~~ 140 (507)
... -+.|...+.+....
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKH 448 (665)
T ss_pred cCChhhHHHHHHHHHHHHHh
Confidence 544 34455555554444
No 460
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.64 E-value=25 Score=36.33 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010575 359 RAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHL 405 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (507)
.+|+++.|++.-.+.. +..+|..|+......|+.+-|+-+|++.
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3444444444444432 3344444444444444444444444443
No 461
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=46.08 E-value=2.7e+02 Score=26.49 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhCCC--CCCHHHH---H-HHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRMPF--EANAAIW---G-SLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~---~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
..|.|++.|...+.++.|..+..+... ..+..-| . -+.....-.+++..|.+.+-+++...|.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 345555556666666666666665521 1111011 1 1112223445666666666665555554
No 462
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=45.92 E-value=1.4e+02 Score=23.03 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIW-GSLLAASNIYGDVELGECALQH 404 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 404 (507)
..+-.++..++.-.|..++|.++++..+-.++-... ..++..|....+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344556667777777777777777777543433333 3466667666666665555444
No 463
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.48 E-value=2.9e+02 Score=29.28 Aligned_cols=157 Identities=15% Similarity=0.064 Sum_probs=98.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHH
Q 010575 116 ALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAI 195 (507)
Q Consensus 116 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 195 (507)
++|..+.+.|..+-|+.+.+.-..+ ...+..+|+++.|++.-.++. |..+|..|+......|+.+-|+
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR----------F~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaE 692 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR----------FELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAE 692 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh----------eeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHH
Confidence 4555566677777777666544333 334556888888888777664 5567899999999999999999
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 010575 196 TLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKS 275 (507)
Q Consensus 196 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 275 (507)
..|+..+.-. .|--.|.-.|+.++-.++.......+ |... ....-.-.|+.++-.+++.....-+
T Consensus 693 m~yQ~~knfe---------kLsfLYliTgn~eKL~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~n~g~~~ 757 (1202)
T KOG0292|consen 693 MCYQRTKNFE---------KLSFLYLITGNLEKLSKMMKIAEIRN---DATG---QFQNALYLGDVKERVKILENGGQLP 757 (1202)
T ss_pred HHHHHhhhhh---------heeEEEEEeCCHHHHHHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHHhcCccc
Confidence 9988876522 22223556677777666665554332 2111 1111223477888788877666544
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 276 VITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
..-.. -..+|.-++|.++.++...
T Consensus 758 laylt-----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 758 LAYLT-----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHH-----HhhcCcHHHHHHHHHhhcc
Confidence 33222 2345777888888887765
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.27 E-value=45 Score=30.02 Aligned_cols=37 Identities=8% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHH
Q 010575 177 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 213 (507)
Q Consensus 177 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 213 (507)
-|+.-|....+.|++++|++++++..+.|..--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3567788888888888888888888887765444444
No 465
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.92 E-value=2.6e+02 Score=28.43 Aligned_cols=82 Identities=6% Similarity=-0.035 Sum_probs=54.0
Q ss_pred hcCCHHHHHHHHhhC-CCCC-C------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCch
Q 010575 359 RAGYLQEAEKLLRRM-PFEA-N------AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 430 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~-~~~~-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (507)
+..++..+.+.|..- ..-| | ......+.-+|....+.++|.++++++.+.+|.++-.-..+..+....|.-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 456666676666532 1111 1 2234555556677778888888888888888877766666667777778888
Q ss_pred HHHHHHHHHH
Q 010575 431 ESGKIRKVMR 440 (507)
Q Consensus 431 ~A~~~~~~~~ 440 (507)
+|+.......
T Consensus 446 ~AL~~~~~~~ 455 (872)
T KOG4814|consen 446 EALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHH
Confidence 8887776664
No 466
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.35 E-value=63 Score=21.12 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=9.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHH
Q 010575 215 AALSACAQLGAVELGEWIHNYI 236 (507)
Q Consensus 215 ~ll~~~~~~~~~~~a~~~~~~~ 236 (507)
.++.++...|++++|.++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444433
No 467
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=43.91 E-value=1.2e+02 Score=24.93 Aligned_cols=60 Identities=7% Similarity=-0.053 Sum_probs=36.0
Q ss_pred HHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 67 IQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 67 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
++..|+.+++.-. .++..+...++.-.|.++++.+.+.++..+..|...-++.+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445665555433 34444545556667777777777777666666555556666666643
No 468
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=43.52 E-value=1.4e+02 Score=22.40 Aligned_cols=98 Identities=12% Similarity=0.040 Sum_probs=49.4
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010575 319 SACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
..+...|+.-+|+++.+.+...+|-..+.... ...+|.+-. ++-... ..|+... ..+ -.+
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~l------h~~QG~if~--~lA~~t-en~d~k~-~yL----------l~s 63 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSWLL------HRLQGTIFY--KLAKKT-ENPDVKF-RYL----------LGS 63 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchHHH------HHHHhHHHH--HHHHhc-cCchHHH-HHH----------HHh
Confidence 45667888888888888888765544432211 111221100 000011 1233321 111 235
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
.+.+.+...+.|+.+..+..++.-+....-++++..--
T Consensus 64 ve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~ka 101 (111)
T PF04781_consen 64 VECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKA 101 (111)
T ss_pred HHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 67788888888887555555555444444444444433
No 469
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.29 E-value=1.4e+02 Score=22.28 Aligned_cols=39 Identities=10% Similarity=-0.096 Sum_probs=16.6
Q ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHH
Q 010575 91 TIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDA 130 (507)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 130 (507)
..++|..+.+.+...+- ....+--.-+..+.+.|+|++|
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH
Confidence 34555555555555442 1222222223344555555555
No 470
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.09 E-value=1.4e+02 Score=28.57 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-----------CCChhHHHHHHHHHHhCCChhHHHHHHHHHh
Q 010575 149 TMVAGYAKVGDLNNARALFELMT-----------EKNVISWTTLIAGYAQMDQPNEAITLFRRMQ 202 (507)
Q Consensus 149 ~li~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 202 (507)
.|++.++-.||+..|+++++.+. .-.+.+|-.+.-+|.-.+++.+|.+.|...+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554443 2234566777788888888888888887764
No 471
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=43.02 E-value=4.6e+02 Score=28.25 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=18.8
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 361 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (507)
...|++..+.+++.++.+..+-.++...|..++..+...|
T Consensus 1242 ~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1242 KALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3345555555555555544344444444444444444443
No 472
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.51 E-value=3.4e+02 Score=26.60 Aligned_cols=358 Identities=13% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHccC--CcHHHHHHHHHHHHcCCCCcHHHHHHHHHH---HHhcCChHHHHHHHHhcccC---CCCh-----hhHH
Q 010575 82 VLKAVVKLS--TIELGREIHCQTVGTGLDSDVHVVAALIQM---YASCKCIYDARKVFDELSLR---VWNV-----AVWN 148 (507)
Q Consensus 82 l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~---~p~~-----~~~~ 148 (507)
+...+...| +...+.+.++......++.-..+...|--+ +.-..+++.|..-++..-.. -|+. .++.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Q ss_pred HHHHHHHhcC-CHHHHHHHHHhcCC--CChhHHHH-----HHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 010575 149 TMVAGYAKVG-DLNNARALFELMTE--KNVISWTT-----LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 220 (507)
Q Consensus 149 ~li~~~~~~~-~~~~A~~~~~~~~~--~~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 220 (507)
.+...|+... .+..+..++++..+ .+...|.. |+..+.-..++..|.+++.---+. -.+-..+|..++-.+
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftl 171 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTL 171 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHH
Q ss_pred hcc---------CCHHHHHHHHHHHHHcCCCCc--------hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------
Q 010575 221 AQL---------GAVELGEWIHNYIEQYGLNTI--------VPLNNALIDMYAKSGKIGKALQVFENMKNK--------- 274 (507)
Q Consensus 221 ~~~---------~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------- 274 (507)
... .++..+.....++.+.. .+| ++..+.-+..|...|+...+...++++.+.
T Consensus 172 s~~~ll~me~d~~dV~~ll~~~~qi~~n~-~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~ 250 (629)
T KOG2300|consen 172 SMLMLLIMERDDYDVEKLLQRCGQIWQNI-SSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSR 250 (629)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCC
Q ss_pred -----------------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--------CCCC-----CHHHHHHHH
Q 010575 275 -----------------------SVITWTTMIAGLALHGLGREALDMFSRMERA--------RVKP-----NEITFIAIL 318 (507)
Q Consensus 275 -----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--------g~~p-----~~~~~~~l~ 318 (507)
.+-+|......-...|-+++|.++-++++.. +..| ...+...++
T Consensus 251 ~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv 330 (629)
T KOG2300|consen 251 GHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIV 330 (629)
T ss_pred CccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHH
Q ss_pred HHHhccCcHHHHHHHHHHhHHhhCCCCC--------hhHHHHHHHHHhhcCCHHHHHHHHhhC-----CCCCCHHHHHHH
Q 010575 319 SACCHVGLVELGRRYFNIMKSRYGIEPK--------IEQYGCMIDLLGRAGYLQEAEKLLRRM-----PFEANAAIWGSL 385 (507)
Q Consensus 319 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l 385 (507)
.+=.-.|++.+|++-...|..-+.-.|. ......+..-++.-|.++.|..-|..+ ...--...-..+
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCc-------hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSG-------NYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
...|.+.|+.+.--++++.+--.+..+.. ++...+-.....+++.||...+.+..+
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
No 473
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.11 E-value=2.2e+02 Score=28.97 Aligned_cols=72 Identities=10% Similarity=0.163 Sum_probs=42.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCC----ChhhHHHHHHHHHhcCCHH------HHHHHHHhcC-CCChhHHHHHHHH
Q 010575 116 ALIQMYASCKCIYDARKVFDELSLRVW----NVAVWNTMVAGYAKVGDLN------NARALFELMT-EKNVISWTTLIAG 184 (507)
Q Consensus 116 ~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~------~A~~~~~~~~-~~~~~~~~~li~~ 184 (507)
+|+.+|...|++-.+.++++......- -...+|..|+.+.+.|.++ .|.+.++... .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 677888888888888888877755411 2345666666666666543 2333333322 2355566655555
Q ss_pred HHh
Q 010575 185 YAQ 187 (507)
Q Consensus 185 ~~~ 187 (507)
...
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 474
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.63 E-value=3.2e+02 Score=26.05 Aligned_cols=61 Identities=15% Similarity=0.008 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhHCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010575 177 SWTTLIAGYAQMDQPNEAITLFRRMQVEN--VKPDEIAMLAALSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 177 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 237 (507)
.+.-+...|...|+++.|++.|.+..+-. .+-....|..+|....-.|+|.....+..+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 45566677777777777777777754421 11112234444444455556655555544444
No 475
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=41.50 E-value=1.2e+02 Score=21.29 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=24.6
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHH
Q 010575 257 KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGRE 294 (507)
Q Consensus 257 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (507)
...+.+.+.++++.+..++..+|..+..++...|...-
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 33456667777777777777777777777666665433
No 476
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=40.42 E-value=3.4e+02 Score=25.97 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHHhC---CChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC
Q 010575 173 KNVISWTTLIAGYAQM---DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 224 (507)
Q Consensus 173 ~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 224 (507)
++...+..+++++.++ .+.+.|+-++-+|.+.|-.|....-..++-++-..|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 4555666677777553 678888888888888887666555555555554444
No 477
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.18 E-value=3e+02 Score=25.31 Aligned_cols=57 Identities=5% Similarity=0.112 Sum_probs=29.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhh
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRR 372 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (507)
.|..+..+.|+..+|.+.|+.+.+.+.+..-......|+.++....-+.+...++-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444566777777777766665322111122334556666555555555444433
No 478
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=39.72 E-value=4.8e+02 Score=27.53 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=73.3
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---hcCChHHHHHHHHhcccCCCChhhHHHHH
Q 010575 75 DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYA---SCKCIYDARKVFDELSLRVWNVAVWNTMV 151 (507)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~li 151 (507)
+...+..||..+.+.|++++...--..|.+.- +.+...|...+.... ..+...++...|++.....-++..|.-.+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~ 190 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVV 190 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHH
Confidence 34456677777888888887777777776653 334555555444332 23666677777777665544555555444
Q ss_pred HHHHh-------cCCHHHHHHHHHhcCC-------CChhHHHH---HHHHHHhCCChhHHHHHHHHHhHCC
Q 010575 152 AGYAK-------VGDLNNARALFELMTE-------KNVISWTT---LIAGYAQMDQPNEAITLFRRMQVEN 205 (507)
Q Consensus 152 ~~~~~-------~~~~~~A~~~~~~~~~-------~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~ 205 (507)
..+.. .++++....+|.+... .....|.. +-..|..+-..++...++..-+..+
T Consensus 191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 191 NYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred HHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 43333 3556666667766553 22222322 2234444555566666666655543
No 479
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.88 E-value=3.2e+02 Score=25.30 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh------ccCcHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHhhcCCH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACC------HVGLVELGRRYFNIMKSRYGIEPKIE-QYGCMIDLLGRAGYL 363 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 363 (507)
-.+++..++++...++. |.+......|.++- ..-+|.....+|+.+.. +.|++. +.|.-+ +.....-.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAV-Ala~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHH-HHHHhhhH
Confidence 35788888888887764 78877776666542 23467777778877763 355543 333322 33344446
Q ss_pred HHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 364 QEAEKLLRRMPFEANAA----IWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 364 ~~A~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
+.++...+.+...|... .+..=...+.+.|+.++|...|++++.+.++.
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 67777777664333222 22333445788999999999999998887774
No 480
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.86 E-value=5.8e+02 Score=28.27 Aligned_cols=79 Identities=11% Similarity=-0.013 Sum_probs=42.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhCCC-CCCHHHHHHHHHH
Q 010575 314 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRMPF-EANAAIWGSLLAA 388 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 388 (507)
|..+++.+.+.+-.+.+.++-..+.+ .++++ ..+++.+.+-....|.+.+|...+-+-+. .........++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 45555666666666666666666655 22332 23455566666667777777666555421 1122344555555
Q ss_pred HHHcCC
Q 010575 389 SNIYGD 394 (507)
Q Consensus 389 ~~~~g~ 394 (507)
+...|.
T Consensus 1064 Lfecg~ 1069 (1480)
T KOG4521|consen 1064 LFECGE 1069 (1480)
T ss_pred HHhccc
Confidence 555554
No 481
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.85 E-value=3.5e+02 Score=25.77 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhCCChhHHHHHHHHHhH
Q 010575 146 VWNTMVAGYAKVGDLNNARALFELMTE------KNVISWTTLIAGYAQMDQPNEAITLFRRMQV 203 (507)
Q Consensus 146 ~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 203 (507)
.+.-+..-|..+|+++.|++.|.+..+ .....|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345566666777777777777766543 1234455666666666777666666555544
No 482
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.80 E-value=1.1e+02 Score=26.97 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCCChh--HHHHHHHHHHhCCChhHHHHHHHHHhH----CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010575 162 NARALFELMTEKNVI--SWTTLIAGYAQMDQPNEAITLFRRMQV----EN-VKPDEIAMLAALSACAQLGAVELGEWIHN 234 (507)
Q Consensus 162 ~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~----~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 234 (507)
.|...|......-.. ..-.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+--
T Consensus 163 ~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 163 KAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455555554443222 233567788899999999999988743 22 33455666777888888898888776655
Q ss_pred HHH
Q 010575 235 YIE 237 (507)
Q Consensus 235 ~~~ 237 (507)
++.
T Consensus 243 eLl 245 (247)
T PF11817_consen 243 ELL 245 (247)
T ss_pred HHh
Confidence 443
No 483
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=38.43 E-value=66 Score=17.80 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHhcCcccCCC
Q 010575 472 FDRLYQILCKINGQMKFAEHLQNEF 496 (507)
Q Consensus 472 ~~~~~~~l~~~~~~~~~~g~~~~~~ 496 (507)
..+......++.+.+...|+.|+--
T Consensus 7 ~~~~~d~a~rv~~f~~~ngRlPnyV 31 (33)
T PF09373_consen 7 KEEYLDMASRVNNFYESNGRLPNYV 31 (33)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCee
Confidence 3566778899999999999999853
No 484
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=38.36 E-value=1.2e+02 Score=23.44 Aligned_cols=39 Identities=10% Similarity=-0.033 Sum_probs=29.2
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 010575 388 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 426 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 426 (507)
.+...-+.+.|.++|+++++..|++..++..|+..+...
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 344555779999999999999999999888888776553
No 485
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.25 E-value=1.2e+02 Score=31.20 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
+-..++..|....+++..+++.+.+.+
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh
Confidence 444555556666666666666666655
No 486
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.18 E-value=2.7e+02 Score=24.13 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC---ChhHH--HHHHHHHhhcCCHHHHHHHHhhC-C--CCCC
Q 010575 307 VKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP---KIEQY--GCMIDLLGRAGYLQEAEKLLRRM-P--FEAN 378 (507)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~--~~~~ 378 (507)
+.+...-++.|+--|.-...+.+|...|..-. ++.| +..++ ..-|......|+.++|++..... | +.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 45566666777666666666666666665443 5555 23333 34567778999999999999988 2 2223
Q ss_pred HHHH--HHHHH--HHHHcCCHHHHHHHHHHHh
Q 010575 379 AAIW--GSLLA--ASNIYGDVELGECALQHLI 406 (507)
Q Consensus 379 ~~~~--~~l~~--~~~~~g~~~~A~~~~~~~~ 406 (507)
...+ ..... =..+.|..++|+++.+.-+
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 2222 22222 2357777888877776543
No 487
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.86 E-value=1.9e+02 Score=22.32 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChHHHHHHHH
Q 010575 95 GREIHCQTVGTGLDSD-VHVVAALIQMYASCKCIYDARKVFD 135 (507)
Q Consensus 95 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 135 (507)
..++|..|.+.|+... ...|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567777777766433 3345566666667777777777765
No 488
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=37.66 E-value=3.9e+02 Score=25.84 Aligned_cols=57 Identities=11% Similarity=-0.001 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 010575 244 IVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSR 301 (507)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (507)
+..+-..-+.++...+..+..-.+..-....|..+-..-+.+....|. .+|...+..
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 333334444444444443222222222333444444455555555555 444444444
No 489
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.61 E-value=1.4e+02 Score=21.40 Aligned_cols=27 Identities=11% Similarity=0.313 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010575 160 LNNARALFELMTEKNVISWTTLIAGYA 186 (507)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~li~~~~ 186 (507)
.+++.++++.++.+++.+|..+..++-
T Consensus 50 ~~k~~~Lld~L~~RG~~AF~~F~~aL~ 76 (90)
T cd08332 50 FSQNVALLNLLPKRGPRAFSAFCEALR 76 (90)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 344444444444444444444444443
No 490
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.07 E-value=1.6e+02 Score=24.17 Aligned_cols=66 Identities=6% Similarity=0.020 Sum_probs=42.8
Q ss_pred hHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc
Q 010575 27 DYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI 92 (507)
Q Consensus 27 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 92 (507)
+.+.++++..--.....-..++..+...++.-.|.++++.+.+.+...+..|.-..|..+.+.|-+
T Consensus 11 ~~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 11 AQAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 334444444322333444566677777777888999999999988667777765566666666644
No 491
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.07 E-value=5.4e+02 Score=27.39 Aligned_cols=173 Identities=13% Similarity=0.117 Sum_probs=86.6
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHH
Q 010575 117 LIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAIT 196 (507)
Q Consensus 117 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 196 (507)
+=+.|...|++++|+++-..-+.. -..++..-...|.+.+++..|-+++-++ ...+..+.--+....+.+ +++
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~--le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~ 436 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDA--LETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALR 436 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHH
Confidence 345788899999998876543111 1123334456677788888888888877 344555555566666655 444
Q ss_pred HHHHHhHCCCCCCHHHHHHHHH-----HH-hccCCHH----HHHHHHHH--------HHHc-CCCCchhHHHHHHHHHHh
Q 010575 197 LFRRMQVENVKPDEIAMLAALS-----AC-AQLGAVE----LGEWIHNY--------IEQY-GLNTIVPLNNALIDMYAK 257 (507)
Q Consensus 197 ~~~~m~~~~~~~~~~~~~~ll~-----~~-~~~~~~~----~a~~~~~~--------~~~~-~~~~~~~~~~~l~~~~~~ 257 (507)
.|-.=+-..++|...+-..++. .+ .+.++++ ++..-++. +... ....+.....+.......
T Consensus 437 ~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~ 516 (911)
T KOG2034|consen 437 TFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLAS 516 (911)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 4333222335555544333222 22 2222222 12111111 1100 001111122223333344
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 010575 258 SGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSR 301 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (507)
.|+.+....+-.-+. .|..++.-+.+.+.+++|++++..
T Consensus 517 ~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 517 HGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred ccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555444333222 355667777788888888877654
No 492
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=36.72 E-value=87 Score=18.09 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 414 GNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+|..|+++-...+++++|.+=|++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 467888888888899888888777764
No 493
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.61 E-value=2.2e+02 Score=22.64 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=17.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC
Q 010575 318 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG 361 (507)
Q Consensus 318 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (507)
+..+...++.-.|.++++.+.+. +...+..|-..-++.+...|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 33334444444455555555443 33333333333334444433
No 494
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=36.27 E-value=86 Score=28.37 Aligned_cols=69 Identities=12% Similarity=-0.008 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH-HHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 375 FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI-LSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
...|+..|...+.-..+.|.+.+...++.++++..|.+...|.. ...-|...++++.+..+|.+-...+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 33477778877776677888999999999999999999998875 5566778899999999987665433
No 495
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.22 E-value=98 Score=23.19 Aligned_cols=43 Identities=9% Similarity=0.055 Sum_probs=20.8
Q ss_pred HHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 010575 84 KAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC 126 (507)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (507)
..+...+..-.|.++++.+.+.++..+..|....++.+...|-
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333334444555555555555544444444444455555443
No 496
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=35.80 E-value=5.5e+02 Score=27.11 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=39.4
Q ss_pred HhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCCCCchh
Q 010575 186 AQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA-----VELGEWIHNYIEQYGLNTIVP 246 (507)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~ 246 (507)
++.++++.|+..+..|.+.|..|....-..++.+.-..|. ...+...+......|++--..
T Consensus 269 irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~ 334 (725)
T PRK13341 269 LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLY 334 (725)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhh
Confidence 4568899999999999999988776665555555544453 233444455555566544333
No 497
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.55 E-value=3.5e+02 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=10.1
Q ss_pred HHHHHHhhcCCHHHHHHHHhhC
Q 010575 352 CMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
.+.+.|...++..+|..+..+.
T Consensus 149 riarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 149 RIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHhcCcHHHHHHHHHHH
Confidence 3444444444444444444443
No 498
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.29 E-value=3.5e+02 Score=24.61 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhH
Q 010575 150 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQV 203 (507)
Q Consensus 150 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 203 (507)
++....+.+++....+.++.+. ....-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444444444444444442 223334456666777777777777776654
No 499
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.01 E-value=1.2e+02 Score=22.50 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=10.0
Q ss_pred HHHHHHhCCChhHHHHHHHHH
Q 010575 181 LIAGYAQMDQPNEAITLFRRM 201 (507)
Q Consensus 181 li~~~~~~~~~~~a~~~~~~m 201 (507)
++..|...++.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444555555555555444
No 500
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.75 E-value=4.3e+02 Score=25.53 Aligned_cols=88 Identities=20% Similarity=0.128 Sum_probs=37.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFEN-MKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
.+..+-..-+.+....|. +.|...+.. ..+++......+...+...| .+++.+.+..+.+. ++ +-...+.++
T Consensus 190 ~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d---~~--vr~~a~~Al 262 (410)
T TIGR02270 190 SDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA---AA--TRREALRAV 262 (410)
T ss_pred CCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCC-chhHHHHHHHHhcC---hh--hHHHHHHHH
Confidence 334444444555555555 344443333 33333333333333333222 23555555554442 11 334455555
Q ss_pred hccCcHHHHHHHHHHh
Q 010575 322 CHVGLVELGRRYFNIM 337 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~ 337 (507)
.+.|+...+.-+.+.+
T Consensus 263 G~lg~p~av~~L~~~l 278 (410)
T TIGR02270 263 GLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHcCCcchHHHHHHHh
Confidence 5555555444444433
Done!