Query 010575
Match_columns 507
No_of_seqs 616 out of 3420
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 09:45:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7.1E-42 2.4E-46 344.9 35.9 428 8-442 82-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.3E-38 1.1E-42 318.1 35.1 416 5-424 112-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 9.2E-30 3.2E-34 242.1 40.5 373 48-428 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-29 6.5E-34 240.0 41.4 373 82-486 5-386 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.6E-28 8.8E-33 236.0 21.6 187 42-257 27-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 5.6E-28 1.9E-32 233.6 22.9 184 176-360 27-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 3.8E-26 1.3E-30 225.6 33.7 392 43-442 8-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 4.3E-25 1.5E-29 218.0 30.4 404 10-419 6-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.8E-24 9.7E-29 208.5 34.3 321 111-439 26-406 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.9E-24 6.4E-29 214.7 31.8 421 11-443 26-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.4E-23 5E-28 203.5 34.2 308 130-442 11-358 (450)
12 3ieg_A DNAJ homolog subfamily 99.9 2.7E-21 9.1E-26 181.3 34.2 326 110-489 2-356 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 4.9E-21 1.7E-25 179.5 32.7 324 75-426 2-353 (359)
14 3fp2_A TPR repeat-containing p 99.9 1E-21 3.4E-26 195.0 28.5 393 41-443 25-458 (537)
15 3hym_B Cell division cycle pro 99.9 8.3E-20 2.8E-24 169.0 28.9 284 110-430 21-322 (330)
16 2xm6_A Protein corresponding t 99.9 4.4E-18 1.5E-22 166.5 40.3 382 38-439 36-468 (490)
17 3hym_B Cell division cycle pro 99.9 2.6E-19 9.1E-24 165.7 29.6 263 173-440 20-297 (330)
18 1fch_A Peroxisomal targeting s 99.9 3.8E-20 1.3E-24 174.3 23.6 299 121-439 35-356 (368)
19 2xm6_A Protein corresponding t 99.9 1.6E-17 5.5E-22 162.5 42.2 363 60-444 26-434 (490)
20 1b89_A Protein (clathrin heavy 99.8 2.6E-19 8.9E-24 165.1 21.1 219 22-271 15-233 (449)
21 2ooe_A Cleavage stimulation fa 99.8 3.4E-17 1.2E-21 161.9 37.5 408 7-442 10-492 (530)
22 1xi4_A Clathrin heavy chain; a 99.8 6.7E-17 2.3E-21 165.9 39.8 380 9-436 984-1378(1630)
23 2ooe_A Cleavage stimulation fa 99.8 4.4E-17 1.5E-21 161.1 37.9 382 6-411 42-495 (530)
24 4g1t_A Interferon-induced prot 99.8 1E-17 3.6E-22 163.3 30.2 214 225-452 228-469 (472)
25 1xi4_A Clathrin heavy chain; a 99.8 3.6E-16 1.2E-20 160.6 41.7 352 42-438 986-1341(1630)
26 4eqf_A PEX5-related protein; a 99.8 1.1E-18 3.7E-23 164.1 21.8 257 178-438 68-352 (365)
27 3mkr_A Coatomer subunit epsilo 99.8 2.9E-17 9.8E-22 148.4 29.5 268 155-436 10-288 (291)
28 1fch_A Peroxisomal targeting s 99.8 1.3E-18 4.5E-23 163.7 21.0 223 114-338 67-312 (368)
29 1b89_A Protein (clathrin heavy 99.8 3.3E-17 1.1E-21 151.2 28.0 330 8-374 30-370 (449)
30 3mkr_A Coatomer subunit epsilo 99.8 6.3E-18 2.2E-22 152.7 22.8 246 182-442 6-264 (291)
31 3cv0_A Peroxisome targeting si 99.8 3.7E-18 1.3E-22 157.7 21.8 256 179-439 25-312 (327)
32 4eqf_A PEX5-related protein; a 99.8 2E-18 6.9E-23 162.3 18.2 258 144-405 65-353 (365)
33 4g1t_A Interferon-induced prot 99.8 5.7E-17 2E-21 158.0 27.4 367 40-420 50-471 (472)
34 3cv0_A Peroxisome targeting si 99.8 9.2E-17 3.1E-21 148.3 23.3 228 77-338 22-267 (327)
35 2pl2_A Hypothetical conserved 99.7 2.3E-16 7.8E-21 136.2 19.3 195 242-439 2-211 (217)
36 3uq3_A Heat shock protein STI1 99.7 7.8E-16 2.7E-20 136.7 23.0 217 213-442 8-236 (258)
37 3uq3_A Heat shock protein STI1 99.7 4.4E-16 1.5E-20 138.4 19.3 236 176-421 6-255 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.7 5.2E-18 1.8E-22 168.9 5.7 145 10-158 127-286 (1134)
39 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.9E-15 6.5E-20 135.7 20.9 241 187-436 17-269 (275)
40 3u4t_A TPR repeat-containing p 99.7 1.9E-15 6.4E-20 135.6 19.3 243 181-427 9-269 (272)
41 3e4b_A ALGK; tetratricopeptide 99.7 5.8E-15 2E-19 142.2 23.2 348 47-443 9-388 (452)
42 3e4b_A ALGK; tetratricopeptide 99.7 3.5E-15 1.2E-19 143.7 21.4 307 15-339 8-350 (452)
43 3spa_A Mtrpol, DNA-directed RN 99.7 1.3E-16 4.3E-21 159.1 10.0 125 242-367 124-256 (1134)
44 2h6f_A Protein farnesyltransfe 99.7 1.6E-14 5.3E-19 134.9 22.8 247 175-426 97-366 (382)
45 1ouv_A Conserved hypothetical 99.7 1E-13 3.5E-18 124.3 27.1 225 174-444 5-253 (273)
46 2h6f_A Protein farnesyltransfe 99.6 1.5E-14 5.2E-19 135.0 21.5 225 210-439 97-344 (382)
47 2ho1_A Type 4 fimbrial biogene 99.6 6.5E-14 2.2E-18 123.9 23.3 137 277-415 106-245 (252)
48 1ouv_A Conserved hypothetical 99.6 1.5E-13 5.1E-18 123.2 25.9 230 143-412 5-255 (273)
49 2pl2_A Hypothetical conserved 99.6 3.7E-14 1.3E-18 122.2 20.6 194 174-373 4-211 (217)
50 2q7f_A YRRB protein; TPR, prot 99.6 7.7E-15 2.6E-19 129.1 16.4 141 277-420 92-234 (243)
51 3u4t_A TPR repeat-containing p 99.6 2E-14 7E-19 128.8 19.5 227 212-442 5-250 (272)
52 2ho1_A Type 4 fimbrial biogene 99.6 4.7E-14 1.6E-18 124.8 21.3 197 245-443 37-239 (252)
53 2vq2_A PILW, putative fimbrial 99.6 6.3E-14 2.2E-18 121.5 21.6 195 245-441 8-210 (225)
54 4a1s_A PINS, partner of inscut 99.6 8.1E-15 2.8E-19 140.0 17.1 261 180-441 53-371 (411)
55 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-14 4.4E-19 127.6 17.1 196 244-442 22-222 (243)
56 2vq2_A PILW, putative fimbrial 99.6 1.5E-13 5.2E-18 119.0 23.4 205 212-419 10-222 (225)
57 3sf4_A G-protein-signaling mod 99.6 3.4E-14 1.2E-18 135.2 20.6 128 313-440 189-334 (406)
58 3vtx_A MAMA; tetratricopeptide 99.6 8.7E-14 3E-18 116.6 19.8 166 275-443 4-171 (184)
59 3ro2_A PINS homolog, G-protein 99.6 3.7E-14 1.3E-18 131.1 19.1 262 180-442 10-332 (338)
60 1xnf_A Lipoprotein NLPI; TPR, 99.6 7.4E-14 2.5E-18 125.3 20.2 237 90-334 19-269 (275)
61 3sf4_A G-protein-signaling mod 99.6 2.2E-14 7.6E-19 136.5 17.4 299 79-431 12-365 (406)
62 4abn_A Tetratricopeptide repea 99.6 2.2E-14 7.4E-19 139.1 16.2 208 227-439 85-318 (474)
63 4e6h_A MRNA 3'-END-processing 99.6 8.7E-12 3E-16 124.1 33.3 403 7-414 63-576 (679)
64 4a1s_A PINS, partner of inscut 99.5 2.4E-13 8.2E-18 129.7 17.2 134 278-411 225-375 (411)
65 3ulq_A Response regulator aspa 99.5 7.3E-13 2.5E-17 125.1 19.5 226 181-406 109-366 (383)
66 3ro2_A PINS homolog, G-protein 99.5 6.1E-13 2.1E-17 122.8 18.5 277 81-411 10-335 (338)
67 3ulq_A Response regulator aspa 99.5 3.8E-13 1.3E-17 127.1 17.1 225 216-441 109-367 (383)
68 3vtx_A MAMA; tetratricopeptide 99.5 8.1E-13 2.8E-17 110.6 17.2 167 244-413 4-175 (184)
69 2ond_A Cleavage stimulation fa 99.5 1.8E-11 6.3E-16 111.6 27.1 219 192-414 33-276 (308)
70 4i17_A Hypothetical protein; T 99.5 9E-13 3.1E-17 114.6 16.9 186 245-441 7-208 (228)
71 4e6h_A MRNA 3'-END-processing 99.5 4.7E-10 1.6E-14 111.8 38.2 179 263-443 327-534 (679)
72 4gyw_A UDP-N-acetylglucosamine 99.5 7.3E-13 2.5E-17 133.5 17.8 161 276-440 9-172 (723)
73 3nf1_A KLC 1, kinesin light ch 99.5 1.3E-13 4.3E-18 126.1 10.4 241 175-440 27-305 (311)
74 1hz4_A MALT regulatory protein 99.5 7.2E-11 2.5E-15 110.9 28.8 261 180-440 19-320 (373)
75 3as5_A MAMA; tetratricopeptide 99.5 3.5E-12 1.2E-16 106.6 17.4 161 278-441 10-172 (186)
76 4abn_A Tetratricopeptide repea 99.5 2.5E-12 8.4E-17 124.6 18.5 178 261-442 84-287 (474)
77 2ond_A Cleavage stimulation fa 99.4 3.8E-11 1.3E-15 109.5 25.1 213 227-444 33-272 (308)
78 3q15_A PSP28, response regulat 99.4 5E-11 1.7E-15 112.2 26.3 225 180-405 106-362 (378)
79 3q15_A PSP28, response regulat 99.4 5.5E-12 1.9E-16 118.8 19.2 225 215-440 106-363 (378)
80 3nf1_A KLC 1, kinesin light ch 99.4 5E-13 1.7E-17 122.1 11.4 247 143-411 26-310 (311)
81 4i17_A Hypothetical protein; T 99.4 1.6E-11 5.5E-16 106.6 18.9 205 208-423 5-224 (228)
82 3as5_A MAMA; tetratricopeptide 99.4 3.3E-11 1.1E-15 100.6 18.9 168 245-415 8-180 (186)
83 1qqe_A Vesicular transport pro 99.3 8.2E-11 2.8E-15 106.3 19.0 187 254-440 46-267 (292)
84 1hz4_A MALT regulatory protein 99.3 1.9E-09 6.6E-14 101.1 28.3 162 177-338 137-320 (373)
85 3qky_A Outer membrane assembly 99.3 2.9E-10 1E-14 100.8 20.2 207 243-489 13-248 (261)
86 1qqe_A Vesicular transport pro 99.3 1.7E-10 5.9E-15 104.1 17.8 223 160-419 33-280 (292)
87 3edt_B KLC 2, kinesin light ch 99.3 9.4E-11 3.2E-15 105.1 15.4 154 186-339 12-197 (283)
88 4gyw_A UDP-N-acetylglucosamine 99.3 4.9E-11 1.7E-15 120.3 14.4 164 244-410 8-176 (723)
89 4ga2_A E3 SUMO-protein ligase 99.3 1.2E-11 4.1E-16 99.4 7.8 121 317-440 3-127 (150)
90 3mv2_B Coatomer subunit epsilo 99.2 1.6E-09 5.4E-14 95.9 21.7 238 154-413 23-287 (310)
91 3qky_A Outer membrane assembly 99.2 2.2E-10 7.4E-15 101.7 15.5 202 208-431 13-250 (261)
92 3mv2_B Coatomer subunit epsilo 99.2 2.6E-09 8.9E-14 94.5 22.1 159 278-441 102-281 (310)
93 2yhc_A BAMD, UPF0169 lipoprote 99.2 7.9E-10 2.7E-14 95.6 18.3 182 246-445 5-216 (225)
94 2fo7_A Synthetic consensus TPR 99.2 4.1E-10 1.4E-14 88.3 14.3 126 314-441 4-131 (136)
95 4ga2_A E3 SUMO-protein ligase 99.2 1.3E-11 4.5E-16 99.2 5.5 143 282-428 3-149 (150)
96 2pzi_A Probable serine/threoni 99.2 3.7E-10 1.3E-14 114.4 16.0 169 256-428 402-583 (681)
97 3edt_B KLC 2, kinesin light ch 99.1 2.5E-09 8.5E-14 95.7 18.8 130 175-304 43-197 (283)
98 3rjv_A Putative SEL1 repeat pr 99.1 5E-09 1.7E-13 89.5 19.6 172 264-444 5-199 (212)
99 3qou_A Protein YBBN; thioredox 99.1 1.3E-09 4.5E-14 97.9 16.2 176 261-440 102-282 (287)
100 2fo7_A Synthetic consensus TPR 99.1 2.1E-09 7.1E-14 84.1 15.4 131 278-411 3-135 (136)
101 3urz_A Uncharacterized protein 99.1 2.5E-09 8.6E-14 91.1 16.0 128 280-411 58-189 (208)
102 2ifu_A Gamma-SNAP; membrane fu 99.1 2.1E-09 7.1E-14 97.8 16.3 218 188-434 4-253 (307)
103 2uy1_A Cleavage stimulation fa 99.1 1.6E-07 5.4E-12 90.8 30.2 202 192-406 196-411 (493)
104 2r5s_A Uncharacterized protein 99.1 1.3E-09 4.3E-14 90.2 12.3 155 282-440 12-171 (176)
105 2vsy_A XCC0866; transferase, g 99.1 2.2E-09 7.4E-14 106.8 15.9 160 258-420 2-169 (568)
106 3gyz_A Chaperone protein IPGC; 99.1 8.7E-10 3E-14 88.0 10.2 96 347-442 36-133 (151)
107 4gco_A Protein STI-1; structur 99.1 2E-09 6.9E-14 83.2 12.0 93 348-440 14-108 (126)
108 2pzi_A Probable serine/threoni 99.0 1.5E-08 5.2E-13 102.6 20.5 190 221-415 402-609 (681)
109 2ifu_A Gamma-SNAP; membrane fu 99.0 2.2E-09 7.7E-14 97.6 12.3 197 222-440 3-222 (307)
110 3dra_A Protein farnesyltransfe 99.0 1.1E-07 3.6E-12 85.2 22.4 148 290-440 124-285 (306)
111 2vgx_A Chaperone SYCD; alterna 99.0 1.3E-09 4.3E-14 87.1 9.0 97 346-442 20-118 (148)
112 2vsy_A XCC0866; transferase, g 99.0 8.5E-09 2.9E-13 102.5 16.9 146 224-373 3-154 (568)
113 4gco_A Protein STI-1; structur 99.0 5E-09 1.7E-13 81.0 12.0 114 307-422 8-124 (126)
114 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.7E-08 6E-13 86.1 15.9 128 278-411 8-153 (213)
115 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.2E-08 7.4E-13 86.5 16.1 185 209-414 3-219 (225)
116 3urz_A Uncharacterized protein 99.0 3.3E-08 1.1E-12 84.1 16.6 134 249-386 58-197 (208)
117 3dra_A Protein farnesyltransfe 99.0 8.4E-07 2.9E-11 79.3 26.3 228 189-421 47-301 (306)
118 2qfc_A PLCR protein; TPR, HTH, 98.9 2.9E-08 9.8E-13 89.6 17.0 163 278-440 77-264 (293)
119 3u3w_A Transcriptional activat 98.9 1.2E-07 4E-12 85.6 20.9 160 281-440 80-264 (293)
120 2r5s_A Uncharacterized protein 98.9 1.3E-08 4.4E-13 84.1 13.3 156 248-407 9-172 (176)
121 2uy1_A Cleavage stimulation fa 98.9 1E-07 3.5E-12 92.2 21.4 355 53-440 6-411 (493)
122 1a17_A Serine/threonine protei 98.9 1.7E-08 5.7E-13 82.3 13.5 127 312-440 14-144 (166)
123 3qou_A Protein YBBN; thioredox 98.9 9.3E-08 3.2E-12 85.8 18.7 162 209-372 116-280 (287)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.9 9.8E-08 3.3E-12 81.4 17.6 130 248-378 9-153 (213)
125 2lni_A Stress-induced-phosphop 98.9 2.4E-08 8.2E-13 77.8 12.6 117 310-428 15-133 (133)
126 1na0_A Designed protein CTPR3; 98.9 3.2E-08 1.1E-12 76.0 13.1 115 311-427 9-125 (125)
127 3upv_A Heat shock protein STI1 98.9 1.2E-08 4E-13 79.0 10.5 96 347-442 4-101 (126)
128 2vyi_A SGTA protein; chaperone 98.9 2.7E-08 9.4E-13 77.1 12.4 118 311-430 12-131 (131)
129 2e2e_A Formate-dependent nitri 98.9 3.9E-09 1.3E-13 87.3 7.5 118 323-442 22-144 (177)
130 2xcb_A PCRH, regulatory protei 98.9 3.1E-08 1.1E-12 78.4 12.5 95 347-441 18-114 (142)
131 3rjv_A Putative SEL1 repeat pr 98.8 2.5E-07 8.4E-12 78.9 18.1 172 59-240 4-198 (212)
132 2c2l_A CHIP, carboxy terminus 98.8 1.2E-08 4.2E-13 91.2 9.8 190 245-441 4-198 (281)
133 3u3w_A Transcriptional activat 98.8 6.3E-07 2.2E-11 80.7 21.0 158 250-407 80-265 (293)
134 1p5q_A FKBP52, FK506-binding p 98.8 4.5E-08 1.5E-12 90.0 13.5 94 347-440 196-292 (336)
135 2qfc_A PLCR protein; TPR, HTH, 98.8 2.4E-07 8.3E-12 83.4 16.8 161 247-407 77-265 (293)
136 4f3v_A ESX-1 secretion system 98.8 9.5E-08 3.2E-12 83.5 13.0 124 316-442 107-237 (282)
137 3gyz_A Chaperone protein IPGC; 98.8 7.4E-08 2.5E-12 76.7 11.3 104 308-413 32-138 (151)
138 4f3v_A ESX-1 secretion system 98.8 1.4E-07 4.7E-12 82.4 13.9 137 279-420 105-248 (282)
139 1elw_A TPR1-domain of HOP; HOP 98.8 1.8E-07 6.1E-12 70.9 13.2 91 350-440 7-99 (118)
140 2vgx_A Chaperone SYCD; alterna 98.8 2.2E-08 7.5E-13 79.8 8.0 117 298-418 9-128 (148)
141 2kck_A TPR repeat; tetratricop 98.7 5.9E-08 2E-12 72.9 10.0 99 346-444 5-108 (112)
142 1hxi_A PEX5, peroxisome target 98.7 3.7E-08 1.2E-12 75.5 8.8 94 349-442 19-114 (121)
143 3sz7_A HSC70 cochaperone (SGT) 98.7 2E-07 7E-12 75.7 13.5 102 312-415 12-115 (164)
144 2lni_A Stress-induced-phosphop 98.7 1E-07 3.5E-12 74.2 11.2 98 345-442 14-113 (133)
145 4gcn_A Protein STI-1; structur 98.7 4.2E-08 1.5E-12 75.9 8.8 94 348-441 9-111 (127)
146 2dba_A Smooth muscle cell asso 98.7 2E-07 6.7E-12 74.1 13.0 94 347-440 28-126 (148)
147 1elw_A TPR1-domain of HOP; HOP 98.7 2E-07 7E-12 70.6 12.5 111 311-423 4-116 (118)
148 1na0_A Designed protein CTPR3; 98.7 2.4E-07 8.1E-12 71.0 12.7 96 347-442 9-106 (125)
149 3q49_B STIP1 homology and U bo 98.7 1.4E-07 4.7E-12 74.0 11.5 98 345-442 7-106 (137)
150 2fbn_A 70 kDa peptidylprolyl i 98.7 1.2E-07 4.1E-12 79.9 11.5 93 348-440 89-184 (198)
151 2vyi_A SGTA protein; chaperone 98.7 2.1E-07 7.2E-12 72.0 12.0 97 346-442 11-109 (131)
152 3rkv_A Putative peptidylprolyl 98.7 1E-07 3.6E-12 77.3 10.3 85 379-489 63-148 (162)
153 2e2e_A Formate-dependent nitri 98.7 1.7E-07 5.7E-12 77.3 11.7 128 287-417 21-153 (177)
154 3gw4_A Uncharacterized protein 98.7 5.1E-07 1.7E-11 76.1 15.0 152 288-440 4-174 (203)
155 3upv_A Heat shock protein STI1 98.7 1.7E-07 5.7E-12 72.4 10.8 111 312-424 5-123 (126)
156 2xcb_A PCRH, regulatory protei 98.7 1.3E-07 4.4E-12 74.8 10.2 107 312-420 19-127 (142)
157 3sz7_A HSC70 cochaperone (SGT) 98.7 2.7E-07 9.1E-12 75.0 12.3 94 347-440 11-106 (164)
158 3q7a_A Farnesyltransferase alp 98.7 4.9E-06 1.7E-10 75.2 21.3 224 186-440 65-329 (349)
159 3q7a_A Farnesyltransferase alp 98.7 3.1E-05 1.1E-09 70.0 26.2 247 147-421 57-345 (349)
160 2dba_A Smooth muscle cell asso 98.6 4.7E-07 1.6E-11 71.9 13.1 112 310-424 27-144 (148)
161 3gw4_A Uncharacterized protein 98.6 2.8E-07 9.6E-12 77.8 12.0 152 257-408 4-176 (203)
162 2fbn_A 70 kDa peptidylprolyl i 98.6 4.2E-08 1.4E-12 82.7 6.6 117 347-489 38-172 (198)
163 2hr2_A Hypothetical protein; a 98.6 1.2E-07 4.2E-12 74.6 8.7 62 380-441 58-130 (159)
164 1a17_A Serine/threonine protei 98.6 8.8E-07 3E-11 71.8 13.5 128 277-407 14-145 (166)
165 3q49_B STIP1 homology and U bo 98.6 3.8E-07 1.3E-11 71.4 10.8 114 309-424 7-127 (137)
166 1p5q_A FKBP52, FK506-binding p 98.6 2.4E-07 8.2E-12 85.1 10.8 96 347-442 147-259 (336)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.1E-06 3.9E-11 84.3 14.7 94 347-440 317-413 (457)
168 1elr_A TPR2A-domain of HOP; HO 98.5 6.5E-07 2.2E-11 69.2 10.6 95 347-441 4-107 (131)
169 2c2l_A CHIP, carboxy terminus 98.5 1.9E-07 6.4E-12 83.5 8.2 94 43-139 6-100 (281)
170 2xev_A YBGF; tetratricopeptide 98.5 2.6E-07 9E-12 71.5 8.1 89 353-441 8-104 (129)
171 1wao_1 Serine/threonine protei 98.5 2.7E-07 9.2E-12 89.1 9.8 119 318-438 13-135 (477)
172 1hxi_A PEX5, peroxisome target 98.5 4.8E-07 1.6E-11 69.1 9.0 98 314-413 20-119 (121)
173 3dss_A Geranylgeranyl transfer 98.5 3.7E-05 1.3E-09 69.2 22.3 162 186-353 40-233 (331)
174 1elr_A TPR2A-domain of HOP; HO 98.5 4.3E-07 1.5E-11 70.2 8.7 111 313-426 6-125 (131)
175 4gcn_A Protein STI-1; structur 98.5 1.6E-06 5.4E-11 66.9 11.7 95 315-411 12-115 (127)
176 2xev_A YBGF; tetratricopeptide 98.5 1.8E-06 6.1E-11 66.7 11.6 105 316-422 7-119 (129)
177 3dss_A Geranylgeranyl transfer 98.5 4E-05 1.4E-09 69.0 21.5 216 222-441 41-303 (331)
178 3k9i_A BH0479 protein; putativ 98.5 1.3E-07 4.5E-12 71.9 4.7 81 360-440 3-88 (117)
179 2kck_A TPR repeat; tetratricop 98.5 1.1E-06 3.7E-11 65.8 9.8 100 312-413 7-111 (112)
180 2if4_A ATFKBP42; FKBP-like, al 98.5 5.9E-07 2E-11 82.5 9.8 146 277-442 180-328 (338)
181 1ihg_A Cyclophilin 40; ppiase 98.4 1.4E-06 4.7E-11 81.0 11.9 90 346-435 272-363 (370)
182 3ro3_A PINS homolog, G-protein 98.4 1.6E-06 5.3E-11 69.9 10.8 127 314-440 12-156 (164)
183 4b4t_Q 26S proteasome regulato 98.4 2.3E-06 7.8E-11 81.8 13.5 162 279-440 58-243 (434)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3.2E-06 1.1E-10 81.2 14.0 94 349-442 270-380 (457)
185 3rkv_A Putative peptidylprolyl 98.4 7.9E-07 2.7E-11 72.0 8.2 79 346-424 62-143 (162)
186 1ihg_A Cyclophilin 40; ppiase 98.4 1.8E-06 6.3E-11 80.2 10.9 111 312-441 224-335 (370)
187 2l6j_A TPR repeat-containing p 98.4 1.8E-07 6E-12 70.2 3.3 94 346-439 3-104 (111)
188 2hr2_A Hypothetical protein; a 98.4 7.4E-07 2.5E-11 70.2 6.8 106 316-421 16-144 (159)
189 1dce_A Protein (RAB geranylger 98.4 1.9E-05 6.4E-10 77.7 18.2 169 260-431 44-244 (567)
190 3k9i_A BH0479 protein; putativ 98.3 4E-07 1.4E-11 69.1 4.6 93 324-417 3-99 (117)
191 1wao_1 Serine/threonine protei 98.3 4.9E-06 1.7E-10 80.2 13.0 115 286-403 16-134 (477)
192 4b4t_Q 26S proteasome regulato 98.3 4E-05 1.4E-09 73.1 18.6 192 182-373 11-242 (434)
193 3ro3_A PINS homolog, G-protein 98.3 3.5E-06 1.2E-10 67.7 9.3 132 278-409 11-159 (164)
194 2if4_A ATFKBP42; FKBP-like, al 98.3 2.9E-06 1E-10 77.9 9.6 152 245-413 179-333 (338)
195 3ma5_A Tetratricopeptide repea 98.2 5.4E-06 1.8E-10 60.7 8.8 64 378-441 6-69 (100)
196 3n71_A Histone lysine methyltr 98.2 1.4E-05 4.8E-10 76.6 13.9 124 320-443 318-465 (490)
197 1na3_A Designed protein CTPR2; 98.2 6.6E-06 2.2E-10 58.8 8.5 81 347-427 9-91 (91)
198 1zu2_A Mitochondrial import re 98.1 9.9E-07 3.4E-11 69.3 3.1 83 361-443 16-121 (158)
199 2kat_A Uncharacterized protein 98.1 1.4E-05 5E-10 60.1 8.9 77 365-441 3-81 (115)
200 2l6j_A TPR repeat-containing p 98.1 2.9E-05 9.9E-10 57.8 10.3 66 377-442 2-67 (111)
201 3n71_A Histone lysine methyltr 98.0 1.5E-05 5E-10 76.5 9.4 114 356-487 318-449 (490)
202 1na3_A Designed protein CTPR2; 98.0 3.3E-05 1.1E-09 55.0 9.0 64 378-441 8-71 (91)
203 1klx_A Cysteine rich protein B 98.0 8.3E-05 2.8E-09 58.0 11.9 112 325-444 9-128 (138)
204 3bee_A Putative YFRE protein; 98.0 3.1E-05 1.1E-09 55.3 8.4 69 376-444 3-74 (93)
205 1zu2_A Mitochondrial import re 98.0 6.1E-06 2.1E-10 64.8 4.6 110 325-443 16-148 (158)
206 3qwp_A SET and MYND domain-con 97.9 2.6E-05 8.9E-10 73.6 8.9 117 354-488 294-428 (429)
207 1dce_A Protein (RAB geranylger 97.9 0.00035 1.2E-08 68.7 16.4 151 290-444 43-223 (567)
208 2kc7_A BFR218_protein; tetratr 97.9 4E-05 1.4E-09 55.7 7.2 62 355-416 8-72 (99)
209 1pc2_A Mitochondria fission pr 97.8 8.9E-05 3E-09 57.5 8.7 90 377-492 30-124 (152)
210 2kat_A Uncharacterized protein 97.8 8E-05 2.7E-09 55.9 8.3 80 330-411 4-85 (115)
211 3qww_A SET and MYND domain-con 97.8 3E-05 1E-09 73.0 6.7 83 359-441 310-410 (433)
212 3lvg_A Clathrin heavy chain 1; 97.8 1.2E-07 4.2E-12 86.7 -9.4 250 25-296 40-324 (624)
213 1klx_A Cysteine rich protein B 97.7 0.0007 2.4E-08 52.6 12.8 112 290-410 9-128 (138)
214 3ma5_A Tetratricopeptide repea 97.6 0.00013 4.3E-09 53.2 5.9 66 346-411 6-73 (100)
215 2kc7_A BFR218_protein; tetratr 97.5 0.00052 1.8E-08 49.6 9.0 86 317-412 6-94 (99)
216 3ly7_A Transcriptional activat 97.5 0.0036 1.2E-07 56.6 15.5 137 274-412 192-343 (372)
217 3qww_A SET and MYND domain-con 97.4 0.00088 3E-08 63.1 10.9 95 323-417 310-425 (433)
218 3qwp_A SET and MYND domain-con 97.3 0.0018 6.3E-08 61.0 12.1 101 318-418 294-415 (429)
219 1qsa_A Protein (soluble lytic 97.3 0.17 5.8E-06 49.8 26.7 113 291-407 229-347 (618)
220 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0017 6E-08 47.4 8.8 74 347-420 5-87 (104)
221 3u64_A Protein TP_0956; tetrat 97.2 0.0012 4.3E-08 57.0 8.0 87 363-449 179-276 (301)
222 3mkq_A Coatomer beta'-subunit; 97.1 0.047 1.6E-06 56.4 21.3 154 84-270 607-761 (814)
223 1nzn_A CGI-135 protein, fissio 97.1 0.0026 9E-08 47.4 8.3 64 377-440 33-101 (126)
224 1pc2_A Mitochondria fission pr 97.1 0.002 6.8E-08 50.0 7.5 89 327-417 14-109 (152)
225 3ly7_A Transcriptional activat 97.0 0.0062 2.1E-07 55.1 11.7 133 308-444 191-341 (372)
226 3bee_A Putative YFRE protein; 96.9 0.0065 2.2E-07 43.1 9.0 69 344-412 3-76 (93)
227 1wy6_A Hypothetical protein ST 96.9 0.077 2.6E-06 39.6 15.0 141 286-445 17-157 (172)
228 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0086 2.9E-07 43.6 9.4 64 378-441 4-74 (104)
229 3mkq_A Coatomer beta'-subunit; 96.8 0.025 8.6E-07 58.5 16.4 152 256-439 610-762 (814)
230 1y8m_A FIS1; mitochondria, unk 96.6 0.053 1.8E-06 41.1 12.1 91 376-492 36-130 (144)
231 3lvg_A Clathrin heavy chain 1; 96.4 2.7E-06 9.1E-11 78.1 -14.5 242 75-331 53-324 (624)
232 3o48_A Mitochondria fission 1 96.3 0.023 8E-07 42.4 8.4 89 376-490 37-129 (134)
233 3mkq_B Coatomer subunit alpha; 96.3 0.18 6.3E-06 40.1 14.0 104 17-137 12-115 (177)
234 1nzn_A CGI-135 protein, fissio 96.3 0.079 2.7E-06 39.4 11.1 92 325-418 15-113 (126)
235 3mkq_B Coatomer subunit alpha; 96.1 0.38 1.3E-05 38.3 16.2 43 157-201 18-60 (177)
236 4gns_B Protein CSD3, chitin bi 95.7 0.083 2.8E-06 52.9 11.9 55 386-440 344-398 (754)
237 4ady_A RPN2, 26S proteasome re 95.6 2.4 8.3E-05 43.5 25.9 90 12-104 147-258 (963)
238 4ady_A RPN2, 26S proteasome re 95.3 3 0.0001 42.8 26.2 87 252-339 497-588 (963)
239 4h7y_A Dual specificity protei 95.2 0.11 3.9E-06 39.6 8.3 105 310-416 12-131 (161)
240 3u64_A Protein TP_0956; tetrat 94.9 0.16 5.5E-06 44.0 9.5 82 161-242 180-272 (301)
241 4h7y_A Dual specificity protei 94.8 0.31 1E-05 37.3 9.6 112 38-151 10-135 (161)
242 1wy6_A Hypothetical protein ST 94.2 1.3 4.4E-05 33.2 14.7 138 88-241 19-156 (172)
243 2wpv_A GET4, UPF0363 protein Y 93.2 4.2 0.00014 35.9 19.2 182 120-340 22-217 (312)
244 4gns_B Protein CSD3, chitin bi 93.0 0.31 1.1E-05 48.8 8.8 125 45-171 252-398 (754)
245 2ff4_A Probable regulatory pro 92.0 0.39 1.3E-05 44.4 7.7 68 382-449 174-246 (388)
246 3lpz_A GET4 (YOR164C homolog); 91.8 6.7 0.00023 34.9 20.4 47 143-189 135-181 (336)
247 3ffl_A Anaphase-promoting comp 91.7 0.92 3.1E-05 35.5 8.1 53 251-303 26-90 (167)
248 4b4t_P 26S proteasome regulato 91.3 9.7 0.00033 35.8 17.8 58 179-236 141-203 (445)
249 3ffl_A Anaphase-promoting comp 91.3 2.8 9.6E-05 32.7 10.4 61 43-103 22-90 (167)
250 3ltj_A Alpharep-4; protein eng 91.2 5.3 0.00018 32.5 16.4 178 33-224 20-197 (201)
251 1v54_E Cytochrome C oxidase po 91.0 1.3 4.5E-05 31.1 7.4 63 291-355 25-87 (109)
252 1y8m_A FIS1; mitochondria, unk 90.7 4.3 0.00015 30.7 11.7 72 344-415 36-113 (144)
253 4fhn_B Nucleoporin NUP120; pro 90.7 3.4 0.00012 44.4 14.2 126 113-238 901-1049(1139)
254 3lpz_A GET4 (YOR164C homolog); 90.4 9.2 0.00031 34.0 21.4 165 149-339 40-215 (336)
255 4b4t_P 26S proteasome regulato 90.4 12 0.0004 35.2 16.5 205 189-405 30-264 (445)
256 1v54_E Cytochrome C oxidase po 90.2 1.8 6.2E-05 30.4 7.5 63 56-119 25-87 (109)
257 3o48_A Mitochondria fission 1 90.0 4.7 0.00016 30.1 10.2 73 345-417 38-116 (134)
258 3ltm_A Alpha-REP4; protein eng 89.7 7.4 0.00025 31.9 18.3 91 143-238 94-184 (211)
259 3ltm_A Alpha-REP4; protein eng 89.6 7.5 0.00026 31.8 16.0 188 24-225 16-203 (211)
260 1qsa_A Protein (soluble lytic 89.1 18 0.00062 35.5 27.7 77 14-92 76-152 (618)
261 1zbp_A Hypothetical protein VP 88.8 10 0.00036 32.3 12.9 122 284-416 5-137 (273)
262 4fhn_B Nucleoporin NUP120; pro 88.0 19 0.00065 38.6 17.5 146 149-295 817-990 (1139)
263 2y69_E Cytochrome C oxidase su 87.1 3.1 0.00011 31.0 7.4 63 291-355 68-130 (152)
264 2ff4_A Probable regulatory pro 87.0 3.5 0.00012 38.0 9.9 70 280-350 175-248 (388)
265 2y69_E Cytochrome C oxidase su 86.1 4 0.00014 30.4 7.5 61 58-119 70-130 (152)
266 3txn_A 26S proteasome regulato 85.3 22 0.00077 32.5 21.6 291 113-444 21-345 (394)
267 2uwj_G Type III export protein 84.6 8.2 0.00028 27.0 9.2 59 152-213 47-105 (115)
268 3esl_A Checkpoint serine/threo 84.3 11 0.00039 30.5 10.2 52 393-444 93-146 (202)
269 2p58_C Putative type III secre 83.9 9 0.00031 26.8 9.6 51 153-205 49-99 (116)
270 1zbp_A Hypothetical protein VP 82.7 7.7 0.00026 33.1 9.0 56 86-142 7-62 (273)
271 2uwj_G Type III export protein 81.6 11 0.00038 26.3 9.3 86 225-315 21-106 (115)
272 2p58_C Putative type III secre 80.9 12 0.00041 26.2 10.0 86 225-315 22-107 (116)
273 2wpv_A GET4, UPF0363 protein Y 80.8 29 0.00099 30.6 21.9 168 247-440 35-215 (312)
274 4b4t_R RPN7, 26S proteasome re 78.0 31 0.001 32.1 12.6 94 247-340 133-237 (429)
275 4a1g_A Mitotic checkpoint seri 75.4 23 0.00077 27.3 8.8 47 398-444 84-132 (152)
276 4b4t_R RPN7, 26S proteasome re 74.4 6.4 0.00022 36.8 6.9 96 313-408 133-237 (429)
277 2wvi_A Mitotic checkpoint seri 72.0 30 0.001 27.0 8.9 47 398-444 79-127 (164)
278 1wdy_A 2-5A-dependent ribonucl 70.4 36 0.0012 28.9 10.6 114 15-136 7-127 (285)
279 3txn_A 26S proteasome regulato 62.7 93 0.0032 28.4 27.9 153 250-406 104-282 (394)
280 1wdy_A 2-5A-dependent ribonucl 61.7 31 0.0011 29.3 8.4 117 46-171 7-129 (285)
281 3bqo_A Telomeric repeat-bindin 59.9 66 0.0023 25.8 12.2 72 363-434 94-172 (211)
282 4b4t_S RPN3, 26S proteasome re 58.2 34 0.0012 32.5 8.1 62 312-373 232-296 (523)
283 1k1a_A B-cell lymphoma 3-encod 56.7 48 0.0016 27.3 8.5 86 49-138 14-103 (241)
284 4aez_C MAD3, mitotic spindle c 55.6 32 0.0011 28.4 6.6 48 397-444 132-181 (223)
285 2d2s_A Exocyst complex compone 55.4 52 0.0018 27.5 8.1 89 47-138 24-118 (235)
286 4a1g_A Mitotic checkpoint seri 54.3 71 0.0024 24.5 8.6 47 94-140 83-130 (152)
287 4gq2_M Nucleoporin NUP120; bet 50.4 1.1E+02 0.0037 32.0 11.3 51 317-373 816-866 (950)
288 2r9g_A AAA ATPase, central reg 50.2 98 0.0034 24.9 8.3 64 178-242 14-85 (204)
289 3hra_A Ankyrin repeat family p 50.0 55 0.0019 25.9 7.6 16 21-36 13-28 (201)
290 2fu4_A Ferric uptake regulatio 49.7 47 0.0016 22.0 5.9 62 65-127 6-68 (83)
291 1oyz_A Hypothetical protein YI 49.2 1.2E+02 0.0042 25.7 22.0 219 36-271 32-260 (280)
292 4b4t_S RPN3, 26S proteasome re 49.0 92 0.0031 29.6 9.4 120 42-169 232-366 (523)
293 1n11_A Ankyrin; clathrin, BAND 48.8 1E+02 0.0036 28.3 10.2 145 16-169 17-168 (437)
294 3bu8_A Telomeric repeat-bindin 48.2 1E+02 0.0035 25.2 8.1 51 92-142 88-145 (235)
295 2fe3_A Peroxide operon regulat 47.8 52 0.0018 25.0 6.4 62 65-127 11-72 (145)
296 3eu9_A Huntingtin-interacting 47.4 99 0.0034 25.1 9.0 18 20-37 16-33 (240)
297 2d2s_A Exocyst complex compone 47.0 92 0.0031 26.0 8.3 87 181-270 24-116 (235)
298 2nsz_A Programmed cell death p 46.8 85 0.0029 23.2 8.0 63 249-311 11-78 (129)
299 1k1a_A B-cell lymphoma 3-encod 45.8 78 0.0027 25.9 8.1 88 82-170 12-102 (241)
300 1mzb_A Ferric uptake regulatio 45.4 52 0.0018 24.6 6.1 61 66-127 8-69 (136)
301 3aji_A 26S proteasome non-ATPa 44.4 1.3E+02 0.0043 24.4 9.5 109 17-135 10-127 (231)
302 1ya0_A SMG-7 transcript varian 44.2 65 0.0022 30.6 7.8 40 394-433 167-206 (497)
303 2w57_A Ferric uptake regulatio 44.2 53 0.0018 25.1 6.0 62 65-127 6-68 (150)
304 2xig_A Ferric uptake regulatio 44.0 59 0.002 24.8 6.3 62 65-127 16-77 (150)
305 3bge_A Predicted ATPase; struc 43.9 1E+02 0.0034 24.8 7.4 47 178-224 7-56 (201)
306 2ion_A PDCD4, programmed cell 42.1 79 0.0027 24.2 6.6 62 249-310 13-79 (152)
307 3eu9_A Huntingtin-interacting 41.0 82 0.0028 25.7 7.5 110 51-169 16-131 (240)
308 4gq2_M Nucleoporin NUP120; bet 40.7 2.9E+02 0.0098 28.9 12.7 127 150-290 816-950 (950)
309 3kea_A K1L; tropism, ANK repea 40.5 1E+02 0.0035 26.4 8.2 210 23-246 9-224 (285)
310 3ljn_A Hypothetical protein; a 40.5 1.9E+02 0.0067 25.5 11.3 89 16-109 23-114 (364)
311 3ctd_A Putative ATPase, AAA fa 40.5 1.3E+02 0.0043 24.6 7.6 69 174-242 31-107 (213)
312 2nsz_A Programmed cell death p 40.3 1.1E+02 0.0037 22.6 7.5 24 179-202 11-34 (129)
313 1bpo_A Protein (clathrin); cla 40.3 1.6E+02 0.0054 27.6 9.1 143 23-173 342-485 (494)
314 2ion_A PDCD4, programmed cell 38.7 85 0.0029 24.1 6.3 24 179-202 13-36 (152)
315 2cfu_A SDSA1; SDS-hydrolase, l 37.4 65 0.0022 32.0 6.9 64 363-429 436-499 (658)
316 3jxi_A Vanilloid receptor-rela 36.9 58 0.002 27.3 5.9 52 51-102 12-72 (260)
317 3eyy_A Putative iron uptake re 36.7 67 0.0023 24.3 5.5 61 65-127 8-68 (145)
318 3qil_A Clathrin heavy chain 1; 36.0 6.1 0.00021 28.8 -0.5 52 43-97 34-85 (125)
319 4ets_A Ferric uptake regulatio 35.6 95 0.0032 24.1 6.3 69 58-127 14-85 (162)
320 4aez_C MAD3, mitotic spindle c 34.7 1.9E+02 0.0065 23.8 8.0 52 293-345 131-183 (223)
321 3ygs_P Procaspase 9; apoptosis 34.7 59 0.002 22.6 4.5 38 259-296 51-88 (97)
322 3bu8_A Telomeric repeat-bindin 32.7 50 0.0017 26.9 4.1 19 355-373 122-140 (235)
323 2ijq_A Hypothetical protein; s 32.6 1.7E+02 0.0059 22.6 7.2 55 286-340 42-104 (161)
324 2fe3_A Peroxide operon regulat 32.6 1.4E+02 0.0047 22.5 6.7 59 302-362 13-71 (145)
325 3kea_A K1L; tropism, ANK repea 32.3 1.2E+02 0.0042 25.9 7.3 178 83-270 35-217 (285)
326 3ljn_A Hypothetical protein; a 32.0 1.8E+02 0.006 25.8 8.6 15 255-269 180-194 (364)
327 1oyz_A Hypothetical protein YI 31.3 2.4E+02 0.0081 23.8 21.8 17 244-260 141-157 (280)
328 3ygs_P Procaspase 9; apoptosis 31.0 75 0.0026 22.1 4.5 31 160-190 53-83 (97)
329 3aji_A 26S proteasome non-ATPa 30.9 1.9E+02 0.0064 23.3 8.0 82 48-135 10-94 (231)
330 2b7e_A PRE-mRNA processing pro 30.8 73 0.0025 19.8 3.8 30 57-86 2-31 (59)
331 3esl_A Checkpoint serine/threo 30.2 2.2E+02 0.0075 23.0 12.3 55 189-243 93-148 (202)
332 2o03_A Probable zinc uptake re 29.9 80 0.0027 23.3 4.8 45 82-126 16-60 (131)
333 3b7b_A Euchromatic histone-lys 29.2 2E+02 0.0069 23.2 8.0 22 17-38 15-36 (237)
334 3mwm_A ZUR, putative metal upt 29.1 75 0.0026 23.8 4.6 45 82-126 19-63 (139)
335 3b7b_A Euchromatic histone-lys 28.6 1.8E+02 0.0061 23.6 7.5 21 218-238 215-235 (237)
336 2r9g_A AAA ATPase, central reg 28.3 2.3E+02 0.008 22.8 9.2 38 287-325 25-62 (204)
337 3re2_A Predicted protein; meni 28.1 1.8E+02 0.0063 26.0 7.1 57 410-486 293-349 (472)
338 3ctd_A Putative ATPase, AAA fa 27.9 2.5E+02 0.0084 22.9 8.0 39 287-325 46-84 (213)
339 2xig_A Ferric uptake regulatio 27.3 2E+02 0.0069 21.7 6.9 42 320-362 35-76 (150)
340 1mzb_A Ferric uptake regulatio 26.6 1.8E+02 0.0062 21.5 6.4 59 201-260 9-68 (136)
341 1wgl_A TOLL-interacting protei 26.4 1E+02 0.0036 19.0 4.0 23 424-446 34-56 (59)
342 3bge_A Predicted ATPase; struc 26.4 2.5E+02 0.0087 22.6 7.4 39 287-325 18-56 (201)
343 3u84_A Menin; MLL, JUND, ledgf 26.1 2E+02 0.0068 26.3 7.1 56 410-485 315-370 (550)
344 2w57_A Ferric uptake regulatio 25.6 2E+02 0.0067 21.8 6.5 61 199-260 6-67 (150)
345 2ijq_A Hypothetical protein; s 25.3 1.8E+02 0.006 22.6 6.0 52 53-104 44-103 (161)
346 2ko4_A Mediator of RNA polymer 25.3 1.5E+02 0.0052 19.6 4.8 38 31-68 24-63 (81)
347 2pnn_A Transient receptor pote 24.9 2.4E+02 0.0081 23.6 7.8 50 52-101 21-79 (273)
348 1n11_A Ankyrin; clathrin, BAND 24.8 3.9E+02 0.013 24.2 10.0 296 82-405 17-334 (437)
349 2crb_A Nuclear receptor bindin 24.8 89 0.003 21.4 3.6 23 416-438 18-40 (97)
350 3t8k_A Uncharacterized protein 24.6 2.5E+02 0.0087 21.9 7.9 90 21-110 14-108 (186)
351 3hzj_A Rabgap1L, RAB GTPase-ac 24.5 3.5E+02 0.012 23.5 9.9 128 56-188 130-274 (310)
352 3d5l_A Regulatory protein RECX 24.2 3E+02 0.01 22.6 9.6 25 349-373 181-206 (221)
353 3mwm_A ZUR, putative metal upt 24.1 99 0.0034 23.1 4.5 46 45-90 17-62 (139)
354 2o03_A Probable zinc uptake re 24.1 1.3E+02 0.0046 22.0 5.2 44 282-325 16-59 (131)
355 2zu6_B Programmed cell death p 23.8 3.6E+02 0.012 23.5 11.1 57 147-203 6-66 (307)
356 4ets_A Ferric uptake regulatio 23.8 2.2E+02 0.0076 21.9 6.6 59 201-260 24-84 (162)
357 3qye_A TBC1 domain family memb 23.1 3.8E+02 0.013 23.5 10.1 132 56-191 164-310 (331)
358 2qfz_A TBC1 domain family memb 22.2 2.7E+02 0.0093 24.7 7.8 78 97-174 230-316 (345)
359 3eyy_A Putative iron uptake re 21.2 2.1E+02 0.0073 21.4 5.9 35 327-362 33-67 (145)
360 2qx5_A Nucleoporin NIC96; mRNA 20.7 6.2E+02 0.021 25.0 20.3 22 81-102 157-178 (661)
361 3twr_A Tankyrase-2; ankyrin re 20.5 2.7E+02 0.0093 20.8 8.6 110 17-135 12-129 (165)
362 2pm7_A Protein WEB1, protein t 20.5 4.9E+02 0.017 23.7 11.3 26 415-440 338-363 (399)
363 2pk8_A Uncharacterized protein 20.4 76 0.0026 21.6 2.6 27 471-497 14-40 (103)
364 2fu4_A Ferric uptake regulatio 20.1 1.9E+02 0.0065 18.8 6.5 59 200-259 7-66 (83)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-42 Score=344.89 Aligned_cols=428 Identities=11% Similarity=0.027 Sum_probs=382.3
Q ss_pred CChHHHHHHHHHHHccCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 010575 8 QNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKA 85 (507)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 85 (507)
+++..|+.++..|.+.|++++|..+|+++.. |+..++..++.++.+.|++++|..+|+.+.. .+++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHH
Confidence 6778899999999999999999999999864 7888999999999999999999999999875 36888999999999
Q ss_pred HHccCCcHHHHHHHHHHHHc---------------CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCC-hhhHHH
Q 010575 86 VVKLSTIELGREIHCQTVGT---------------GLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWN-VAVWNT 149 (507)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 149 (507)
|.+.|++++|.++|+++... +..++..+++.++.+|.+.|++++|.++|+++....|+ ...+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999999853221 12335789999999999999999999999999887663 333333
Q ss_pred H--------------------------------------HHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCC
Q 010575 150 M--------------------------------------VAGYAKVGDLNNARALFELMTE--KNVISWTTLIAGYAQMD 189 (507)
Q Consensus 150 l--------------------------------------i~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 189 (507)
+ +..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 3 4556678999999999999987 78999999999999999
Q ss_pred ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 010575 190 QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFE 269 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 269 (507)
++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999865 3467789999999999999999999999999765 6678899999999999999999999999
Q ss_pred hcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC
Q 010575 270 NMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 346 (507)
Q Consensus 270 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 346 (507)
++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYD 474 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 8764 467899999999999999999999999999874 447789999999999999999999999999874 3457
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++++.+|+++.+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 899999999999999999999999988 44777 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 418 ILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
.++.+|.+.|++++|.++++++.+.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-38 Score=318.10 Aligned_cols=416 Identities=8% Similarity=-0.007 Sum_probs=366.6
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHhccCC--CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHc------------
Q 010575 5 GLDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKS--KPDVYLYNTTIKALCQTDNPLNAVILYNKIQAS------------ 70 (507)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------ 70 (507)
+..|+..++..++.+|.+.|++++|..+|+.+. .++..+|+.++.+|.+.|++++|+.+|+++...
T Consensus 112 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 112 DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 346888999999999999999999999999984 588899999999999999999999999953221
Q ss_pred ---CCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHH------------------------------
Q 010575 71 ---ALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAAL------------------------------ 117 (507)
Q Consensus 71 ---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------ 117 (507)
+.+++..+|..++.+|.+.|++++|.++|+++.+.++. +...+..+
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 270 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH
Confidence 22335788999999999999999999999999987643 33333332
Q ss_pred --------HHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010575 118 --------IQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYA 186 (507)
Q Consensus 118 --------~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 186 (507)
+..|.+.|++++|.++|+++....++..+|+.++..|.+.|++++|.++|+++.+ .+..+|+.++.++.
T Consensus 271 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLH 350 (597)
T ss_dssp HHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH
Confidence 5566678999999999999988655999999999999999999999999999873 46788999999999
Q ss_pred hCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010575 187 QMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 266 (507)
Q Consensus 187 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 266 (507)
+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|..+|+++.+.. +.+..+++.++.+|.+.|++++|.+
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998654 5578899999999999999999999999999865 5568899999999999999999999
Q ss_pred HHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh--
Q 010575 267 VFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY-- 341 (507)
Q Consensus 267 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 341 (507)
+|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+..
T Consensus 429 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9998764 467899999999999999999999999999863 4478999999999999999999999999998643
Q ss_pred -CCCCC--hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 342 -GIEPK--IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 342 -~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
+..|+ ..+|..++.+|.+.|++++|.++|+++ ...| +..+|..++.+|...|++++|.+.++++++++|+++.++
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 55677 789999999999999999999999998 3334 788999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 010575 417 AILSNIYA 424 (507)
Q Consensus 417 ~~l~~~~~ 424 (507)
..++.+|.
T Consensus 588 ~~l~~~~~ 595 (597)
T 2xpi_A 588 DLLKRALE 595 (597)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 99988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=9.2e-30 Score=242.10 Aligned_cols=373 Identities=11% Similarity=0.075 Sum_probs=302.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 010575 48 IKALCQTDNPLNAVILYNKIQASALRPDN-YSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC 126 (507)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (507)
...+.+.|++++|...++.+.+. .|+. ..+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 44566778888888888877764 3543 445555566677888888888888877765 3367778888888888888
Q ss_pred hHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHh
Q 010575 127 IYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQ 202 (507)
Q Consensus 127 ~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 202 (507)
+++|...|+++....| +..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888888877666 455688888888888888888888877764 3 34567778888888899999999988888
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHH
Q 010575 203 VENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITW 279 (507)
Q Consensus 203 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 279 (507)
+.. +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+ .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 753 3356778888888889999999999998888875 45577788888899999999999999887654 356788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (507)
..+...+...|++++|+..|+++.+.. +.+..++..+...+.+.|++++|...|+++.+. .+.+..++..+...+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 899999999999999999999998863 335678889999999999999999999999874 45678899999999999
Q ss_pred cCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 360 AGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
.|++++|.+.++++ ...| +..++..++..+.+.|++++|...+++++++.|+++.+|..++.++.+.|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999987 4445 577899999999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.9e-29 Score=239.96 Aligned_cols=373 Identities=13% Similarity=0.076 Sum_probs=325.0
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCH
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDL 160 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~ 160 (507)
+...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++......| +..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 456678899999999999999987643 566777888899999999999999999888766 778999999999999999
Q ss_pred HHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010575 161 NNARALFELMTE--K-NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 161 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 237 (507)
++|+..|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...++.+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999864 3 45689999999999999999999999998864 2344566778888999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010575 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 314 (507)
+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 55678899999999999999999999999875 356789999999999999999999999998753 2357889
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHc
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIY 392 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~ 392 (507)
..+..++...|++++|+..|+++.+. .+.++.+|..+...+.+.|++++|.+.|+++ ..+.+..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999863 3445788999999999999999999999988 2345788999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCCh
Q 010575 393 GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDF 472 (507)
Q Consensus 393 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (507)
|++++|...++++++..|+++.++..++.+|.+.|++++|++.++++.+ .+|+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~ 372 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------------------------ISPTF 372 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--------------------------TCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------hCCCC
Confidence 9999999999999999999999999999999999999999999999973 25666
Q ss_pred HHHHHHHHHHHHHH
Q 010575 473 DRLYQILCKINGQM 486 (507)
Q Consensus 473 ~~~~~~l~~~~~~~ 486 (507)
...+..+..+...+
T Consensus 373 ~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 373 ADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHc
Confidence 67777777665544
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.6e-28 Score=235.98 Aligned_cols=187 Identities=11% Similarity=0.114 Sum_probs=156.4
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCC---------cHHHHHHHHHHHHcCCCCcHH
Q 010575 42 YLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLST---------IELGREIHCQTVGTGLDSDVH 112 (507)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 112 (507)
..++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788889999999999999999999999999999999999998887654 577888999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChh
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPN 192 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 192 (507)
+|++||.+|++.|++++|.++|++|...+ ..||..+|+.+|.+|++.|+++
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-----------------------------~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG-----------------------------IQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------------------------CCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------------------------CCCccceehHHHHHHHHCCCHH
Confidence 99999999999998888888888887651 2467777777888888888888
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010575 193 EAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 257 (507)
Q Consensus 193 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (507)
+|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|..|+..+|+.++..|+.
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888888888888888888888877765
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.6e-28 Score=233.62 Aligned_cols=184 Identities=11% Similarity=0.098 Sum_probs=169.9
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHcCCCCchh
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA---------VELGEWIHNYIEQYGLNTIVP 246 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 246 (507)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|..+|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
+|+++|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999875 7899999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
+.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999987 9999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.8e-26 Score=225.57 Aligned_cols=392 Identities=10% Similarity=-0.033 Sum_probs=291.3
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYA 122 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (507)
.|......+.+.|++++|+..|+++.+.+ |+...|..+..++...|++++|...++.+++.++. +..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHH
Confidence 34445556666666666666666666643 56666666666666666666666666666665432 4556666666666
Q ss_pred hcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHH------------------------------------
Q 010575 123 SCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARA------------------------------------ 165 (507)
Q Consensus 123 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~------------------------------------ 165 (507)
..|++++|...|+++....| +......++..+........+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 66666666666666655543 22333333332222111111111
Q ss_pred --HHHhcCC---------C-ChhHHHHHHHHHHh---CCChhHHHHHHHHHhH-----CCC--------CCCHHHHHHHH
Q 010575 166 --LFELMTE---------K-NVISWTTLIAGYAQ---MDQPNEAITLFRRMQV-----ENV--------KPDEIAMLAAL 217 (507)
Q Consensus 166 --~~~~~~~---------~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~ll 217 (507)
.+..... | +...+......+.. .|++++|...|+++.+ ... +.+...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 1111110 1 24455555555555 8999999999999987 311 22345677888
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHH
Q 010575 218 SACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGRE 294 (507)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 294 (507)
..+...|+++.|...++.+.+.... ...+..+..+|...|++++|...|+.+.+ .+...|..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8999999999999999999988644 88888999999999999999999998765 356789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-
Q 010575 295 ALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM- 373 (507)
Q Consensus 295 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 373 (507)
|...++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|...++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999864 335678888999999999999999999999874 3446778889999999999999999999987
Q ss_pred ---CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 374 ---PFEAN----AAIWGSLLAASNI---YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 374 ---~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+..++ ...+..+...+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22232 4488999999999 999999999999999999999999999999999999999999999999743
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.3e-25 Score=218.05 Aligned_cols=404 Identities=9% Similarity=-0.062 Sum_probs=324.0
Q ss_pred hHHHHHHHHHHHccCChhHHHHHhccCCC--CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 010575 10 NHLLSRFIDSCSSLGFSDYAYSIFTHKSK--PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVV 87 (507)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 87 (507)
...+..+...+.+.|++++|...|+++.. |+...|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45677788899999999999999998753 888999999999999999999999999999854 334567888999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH--------------------------------
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFD-------------------------------- 135 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------- 135 (507)
..|++++|...|+.+.+.++. +......++..+........+.+.+.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999988743 33333444444333222222222111
Q ss_pred ------hcccC-------CC-ChhhHHHHHHHHHh---cCCHHHHHHHHHhcCC-----C------------ChhHHHHH
Q 010575 136 ------ELSLR-------VW-NVAVWNTMVAGYAK---VGDLNNARALFELMTE-----K------------NVISWTTL 181 (507)
Q Consensus 136 ------~~~~~-------~p-~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~-----~------------~~~~~~~l 181 (507)
..... .| +...+......+.. .|++++|+..|+++.+ . +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11000 01 24445555555554 8999999999988765 1 34578889
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
...+...|++++|...|+++.+.+ |+...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 999999999999999999998865 337888899999999999999999999998875 55677888999999999999
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 262 GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 262 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998764 456789999999999999999999999998753 3356788889999999999999999999998
Q ss_pred HhhCCCCC----hhHHHHHHHHHhh---cCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 339 SRYGIEPK----IEQYGCMIDLLGR---AGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 339 ~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
....-.++ ...+..+...+.. .|++++|...++++ ... .+..++..+...+...|++++|...+++++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 65322233 3488899999999 99999999999987 323 367788999999999999999999999999999
Q ss_pred CCCCchHHHH
Q 010575 410 PHNSGNYAIL 419 (507)
Q Consensus 410 p~~~~~~~~l 419 (507)
|+++..+..+
T Consensus 480 ~~~~~~~~~~ 489 (514)
T 2gw1_A 480 RTMEEKLQAI 489 (514)
T ss_dssp SSHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 9988777766
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.8e-24 Score=208.46 Aligned_cols=321 Identities=13% Similarity=0.034 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010575 111 VHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYA 186 (507)
Q Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 186 (507)
...+..+...|.+.|++++|..+|+++....| +..+|..+..++...|++++|+..|+++.+ .+..++..++..|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34444444445555555555555554444333 344444445555555555555555544432 23445555666666
Q ss_pred hCCChhHHHHHHHHHhHCCCCCCH----HHHHH------------HHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHH
Q 010575 187 QMDQPNEAITLFRRMQVENVKPDE----IAMLA------------ALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNA 250 (507)
Q Consensus 187 ~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 250 (507)
+.|++++|.+.|+++.+.+ |+. ..+.. +...+...|+++.|...++.+.+.. +.+..++..
T Consensus 106 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 6666666666666665532 222 22222 2445778888899998888888765 556778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHH---------
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAI--------- 317 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l--------- 317 (507)
++.+|.+.|++++|...|+.+.+ .+..+|..++..|...|++++|+..|+++... .| +...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH
Confidence 89999999999999999988764 46788999999999999999999999998875 34 33444444
Q ss_pred ---HHHHhccCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 010575 318 ---LSACCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLA 387 (507)
Q Consensus 318 ---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 387 (507)
...+...|++++|...|+++.+. .|+ ...+..++.++.+.|++++|...++++ ...| +...|..++.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78889999999999999999864 344 457888999999999999999999987 3344 6889999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH------------HHHcC-----CchHHHHHHHHH
Q 010575 388 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI------------YAILG-----RWNESGKIRKVM 439 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~~ 439 (507)
+|...|++++|...+++++++.|+++.++..++.+ |...| +.+++.+.+++.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999844 44445 566777777763
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.9e-24 Score=214.73 Aligned_cols=421 Identities=11% Similarity=-0.002 Sum_probs=286.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 010575 11 HLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVV 87 (507)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 87 (507)
..+..+...+.+.|++++|.+.|++... .+...|..+...+.+.|++++|+..|+++.+.+ +.+..++..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 3445555566666666666666655432 344556666666666666666666666665532 223445555556666
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC----ChhhHHHHHHHHHhcCCHHHH
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW----NVAVWNTMVAGYAKVGDLNNA 163 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~li~~~~~~~~~~~A 163 (507)
..|++++|...|+ .....+.+. ...+..+...+....|...++++....| ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 6666666666664 222211111 1123334444445556666666554422 111223334445555566666
Q ss_pred HHHHHhcCCCChh---HHHHHHHHHHhC--------CChhHHHHHHHHHhHCCCCCC-------HHHHHHHHHHHhccCC
Q 010575 164 RALFELMTEKNVI---SWTTLIAGYAQM--------DQPNEAITLFRRMQVENVKPD-------EIAMLAALSACAQLGA 225 (507)
Q Consensus 164 ~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~-------~~~~~~ll~~~~~~~~ 225 (507)
...+......+.. ....+...+... |++++|..+|+++.+... .+ ..++..+...+...|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhccc
Confidence 5555555543332 333333333222 478899999999887542 22 2346666777888999
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010575 226 VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRM 302 (507)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 302 (507)
++.|...++.+.+.. |+...+..+...|...|++++|...|+.+.+ .+..+|..+...+...|++++|...|+++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999875 4477888899999999999999999998764 45678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----C----
Q 010575 303 ERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----P---- 374 (507)
Q Consensus 303 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~---- 374 (507)
.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...|+++ +
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8863 234578888999999999999999999999874 3445778889999999999999999999886 1
Q ss_pred CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 375 FEANAAIWGSLLAASNIY----------GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.......+......+... |++++|...++++++..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 111233345556677777 999999999999999999999999999999999999999999999987543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.4e-23 Score=203.47 Aligned_cols=308 Identities=12% Similarity=0.063 Sum_probs=256.3
Q ss_pred HHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC
Q 010575 130 ARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 205 (507)
Q Consensus 130 A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 205 (507)
+...+.++....| +...+..+...+.+.|++++|+.+|+++.+ .+..+|..++.++...|++++|...|+++.+.+
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344444445555 778899999999999999999999998874 467899999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch---hHHHHH------------HHHHHhcCCHHHHHHHHHh
Q 010575 206 VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV---PLNNAL------------IDMYAKSGKIGKALQVFEN 270 (507)
Q Consensus 206 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~ 270 (507)
+.+...+..+..++...|++++|...++.+.+.. +.+. ..+..+ ...+...|++++|...|+.
T Consensus 91 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 91 -MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3467888999999999999999999999999765 3333 455544 4458999999999999998
Q ss_pred cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh
Q 010575 271 MKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI 347 (507)
Q Consensus 271 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 347 (507)
+.+ .+...+..++..|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+++... .+.+.
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 245 (450)
T 2y4t_A 169 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHK 245 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChH
Confidence 764 467889999999999999999999999998753 447789999999999999999999999999864 23344
Q ss_pred hHHHHH------------HHHHhhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 348 EQYGCM------------IDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 348 ~~~~~l------------~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
..+..+ +..+.+.|++++|...|+++ ...|+ ...+..++..+.+.|++++|+..++++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445444 78899999999999999988 33454 4478888999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 410 PHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999753
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=2.7e-21 Score=181.33 Aligned_cols=326 Identities=13% Similarity=0.035 Sum_probs=236.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 010575 110 DVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGY 185 (507)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 185 (507)
+...+..+...+...|++++|...|+++....| +...+..+...+...|++++|+..|+++.+ .+...|..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 456677788888888999999999988877766 567777888888888888888888877763 3556777788888
Q ss_pred HhCCChhHHHHHHHHHhHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 186 AQMDQPNEAITLFRRMQVENVKP----DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
...|++++|...|++..+.. | +...+..+.... . ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 88888888888888877643 4 222222221110 0 01122345667777778
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 262 GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 262 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887777777653 355677777788888888888888888877653 3466777778888888888888888888877
Q ss_pred HhhCCCCChhHHH------------HHHHHHhhcCCHHHHHHHHhhC-CCCCC-H----HHHHHHHHHHHHcCCHHHHHH
Q 010575 339 SRYGIEPKIEQYG------------CMIDLLGRAGYLQEAEKLLRRM-PFEAN-A----AIWGSLLAASNIYGDVELGEC 400 (507)
Q Consensus 339 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~----~~~~~l~~~~~~~g~~~~A~~ 400 (507)
+. .+.+...+. .+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|..
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 64 122233222 2366688889999999998887 22333 2 234557778889999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHH
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILC 480 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 480 (507)
.++++++..|+++.++..++.+|.+.|++++|.+.+++..+ ..|++..+...+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------------~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------------HNENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------------------------TCTTCHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999863 3566777777887
Q ss_pred HHHHHHHhc
Q 010575 481 KINGQMKFA 489 (507)
Q Consensus 481 ~~~~~~~~~ 489 (507)
++...++++
T Consensus 348 ~~~~~~~~~ 356 (359)
T 3ieg_A 348 KAQRLLKQS 356 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=4.9e-21 Score=179.53 Aligned_cols=324 Identities=10% Similarity=-0.037 Sum_probs=240.1
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHH
Q 010575 75 DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAG 153 (507)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~ 153 (507)
|+..+..+...+...|++++|...++.+++..+. +..++..+..++...|++++|...|+++....| +...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3456778888999999999999999999998644 678899999999999999999999999988777 67889999999
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh------hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHH
Q 010575 154 YAKVGDLNNARALFELMTEKNV------ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVE 227 (507)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 227 (507)
+...|++++|...|++..+.++ ..+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999999876333 23333321100 011223344555566666
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 228 LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 228 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
+|...++.+.+.. +.+...+..+..+|...|++++|...++.+.+ .+..+|..+...+...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666655543 34455566666666667777777766666544 3456667777777777777777777777766
Q ss_pred CCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh----hHHHHHHHHHhhcCCHHHHHH
Q 010575 305 ARVKPNEITFI------------AILSACCHVGLVELGRRYFNIMKSRYGIEPKI----EQYGCMIDLLGRAGYLQEAEK 368 (507)
Q Consensus 305 ~g~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 368 (507)
.. +.+...+. .+...+...|++++|...++++.+.. +.+. ..+..+...+...|++++|..
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 42 12223222 23566888999999999999998752 2223 235567888999999999999
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 010575 369 LLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 426 (507)
Q Consensus 369 ~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 426 (507)
.++++ ...| +..+|..+...+...|++++|...++++++++|+++.++..+..+....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99988 3334 7789999999999999999999999999999999999888888776554
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1e-21 Score=195.02 Aligned_cols=393 Identities=10% Similarity=-0.031 Sum_probs=296.9
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 010575 41 VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQM 120 (507)
Q Consensus 41 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (507)
...|..+...+.+.|++++|+..|+++.+.. +.++..+..+..++...|++++|.+.++.+++.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4567888899999999999999999999854 346778888999999999999999999999998644 77888999999
Q ss_pred HHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCCh------hHHHHHHHHHHhCCChhHH
Q 010575 121 YASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNV------ISWTTLIAGYAQMDQPNEA 194 (507)
Q Consensus 121 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a 194 (507)
+...|++++|...|+.+ ...|+ .....+..+...+....|...++.+...++ ......+..+....+.+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999999744 33332 222234455556667888998888865211 1223445556667777766
Q ss_pred HHHHHHHhHCCCCCCHHHHH-HHHHHHhc--------cCCHHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHHhcC
Q 010575 195 ITLFRRMQVENVKPDEIAML-AALSACAQ--------LGAVELGEWIHNYIEQYGLNTI------VPLNNALIDMYAKSG 259 (507)
Q Consensus 195 ~~~~~~m~~~~~~~~~~~~~-~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 259 (507)
...+..... ..+....+. .+...+.. .|++++|..+++.+.+...... ..++..+...+...|
T Consensus 180 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 655544433 223322222 22222222 2478899999999887652211 235667778889999
Q ss_pred CHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 010575 260 KIGKALQVFENMKN--KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIM 337 (507)
Q Consensus 260 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 337 (507)
++++|...|+.+.+ |+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 258 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999998875 567788889999999999999999999998863 346788999999999999999999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 338 KSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
.+. .+.+...+..+...+...|++++|...++++ ... .+...+..+...+...|++++|...++++++..|++...
T Consensus 337 ~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 337 QSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 874 2345678899999999999999999999988 223 356788999999999999999999999999888776554
Q ss_pred ------HHHHHHHHHHc----------CCchHHHHHHHHHHhCC
Q 010575 416 ------YAILSNIYAIL----------GRWNESGKIRKVMRDMG 443 (507)
Q Consensus 416 ------~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 443 (507)
+..++.++.+. |++++|+..+++..+..
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 44556888888 99999999999997543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=8.3e-20 Score=169.05 Aligned_cols=284 Identities=11% Similarity=0.077 Sum_probs=180.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 010575 110 DVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGY 185 (507)
Q Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 185 (507)
+...+..+...+...|++++|.++|+++....| +...+..++..+...|++++|...++++.+ .+...|..+...+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 344445555555555666666666665555444 333444444444444555555554444432 2345555666666
Q ss_pred HhCC-ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010575 186 AQMD-QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 264 (507)
Q Consensus 186 ~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 264 (507)
...| ++++|.+.|++..... +.+...+ ..+..+|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~-----------------------------------~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAW-----------------------------------IAYGHSFAVESEHDQA 144 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHH-----------------------------------HHHHHHHHHHTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHH-----------------------------------HHHHHHHHHccCHHHH
Confidence 6666 6666666666655432 1223334 4444445555555555
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 010575 265 LQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY 341 (507)
Q Consensus 265 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 341 (507)
...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 555544432 233455556666777777777777777776652 3355677777777778888888888887776532
Q ss_pred C-------CCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 342 G-------IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 342 ~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
. .+.....+..+...|...|++++|...++++ .. ..+...+..+...+...|++++|...+++++++.|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 1 1334567888888888899999999888877 22 2356788889999999999999999999999999999
Q ss_pred CchHHHHHHHH-HHcCCch
Q 010575 413 SGNYAILSNIY-AILGRWN 430 (507)
Q Consensus 413 ~~~~~~l~~~~-~~~g~~~ 430 (507)
+.++..++.++ ...|+.+
T Consensus 304 ~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHTTTTC--
T ss_pred hHHHHHHHHHHHHHhCchh
Confidence 99999999888 4555543
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=4.4e-18 Score=166.51 Aligned_cols=382 Identities=11% Similarity=-0.038 Sum_probs=310.5
Q ss_pred CCCcccHHHHHHHHHc----CCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHc----cCCcHHHHHHHHHHHHcCCCC
Q 010575 38 KPDVYLYNTTIKALCQ----TDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVK----LSTIELGREIHCQTVGTGLDS 109 (507)
Q Consensus 38 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 109 (507)
..+..++..+...|.. .+++++|+..|++..+.| ++..+..|...|.. .+++++|...|+...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4577788888888887 899999999999998854 56677888888887 899999999999998876
Q ss_pred cHHHHHHHHHHHHh----cCChHHHHHHHHhcccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHH
Q 010575 110 DVHVVAALIQMYAS----CKCIYDARKVFDELSLRVWNVAVWNTMVAGYAK----VGDLNNARALFELMTE-KNVISWTT 180 (507)
Q Consensus 110 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~ 180 (507)
+...+..|...|.. .+++++|...|++....+ +...+..+...|.. .+++++|++.|++..+ .++.++..
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 56777788888888 789999999999987653 56778888888887 7899999999988764 56788888
Q ss_pred HHHHHHh----CCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 181 LIAGYAQ----MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 181 li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
+...|.. .+++++|.+.|++..+.| +...+..+...+.. .+++++|..+++...+.+ +...+..+.
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 262 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLG 262 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 9999988 899999999999998865 45667777777775 789999999999988765 345666777
Q ss_pred HHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 253 DMYAK----SGKIGKALQVFENMKN-KSVITWTTMIAGLALH-----GLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 253 ~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
..|.. .++.++|...|+...+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 88887 8999999999998776 4667888888888887 89999999999998865 4566777777777
Q ss_pred ccC---cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----
Q 010575 323 HVG---LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRMPFEANAAIWGSLLAASNI---- 391 (507)
Q Consensus 323 ~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~---- 391 (507)
..| ++++|++.|++..+. .++..+..+...|.. .+++++|..+|++.-...++..+..+...|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 656 889999999999874 467788889999988 89999999999988333467888889999988
Q ss_pred cCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHHHcCCch--HHHHHHHHH
Q 010575 392 YGDVELGECALQHLIKLEPH---NSGNYAILSNIYAILGRWN--ESGKIRKVM 439 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~--~A~~~~~~~ 439 (507)
.++.++|...|+++.+.+|+ ++.+...++.++.+..... .|.+++++.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 89999999999999998854 6777777776665432221 244555443
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.6e-19 Score=165.65 Aligned_cols=263 Identities=11% Similarity=0.026 Sum_probs=222.7
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHH
Q 010575 173 KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALI 252 (507)
Q Consensus 173 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 252 (507)
.++..+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 355566777788888888888888888887754 2344455667777888899999999998888765 45677888889
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 010575 253 DMYAKSG-KIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE 328 (507)
Q Consensus 253 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 328 (507)
..+...| ++++|...|+.+.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998765 356789999999999999999999999998863 234567777899999999999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C----------CCCCHHHHHHHHHHHHHcCCHHH
Q 010575 329 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P----------FEANAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----------~~~~~~~~~~l~~~~~~~g~~~~ 397 (507)
+|...++++.+ ..+.+...+..+...+...|++++|...++++ . ......++..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999986 33456788999999999999999999999877 1 13346789999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 398 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
|...++++++..|+++.++..++.+|.+.|++++|.+.+++..
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998875
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=3.8e-20 Score=174.31 Aligned_cols=299 Identities=14% Similarity=0.018 Sum_probs=186.1
Q ss_pred HHhcCChHHHHH-HHHhcccCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCh
Q 010575 121 YASCKCIYDARK-VFDELSLRVW-----NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQP 191 (507)
Q Consensus 121 ~~~~g~~~~A~~-~~~~~~~~~p-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 191 (507)
+...|++++|.. .|++.....| +...+..+...+.+.|++++|+..|+++.+ .+..+|..+..++...|++
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 334456666666 5655444322 233444555555555555555555555442 2334455555555555555
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010575 192 NEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENM 271 (507)
Q Consensus 192 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 271 (507)
++|.+.|+++.+.+ +.+..++..+...+...|++++|...++.+.+.... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 55555555554432 223444444444555555555555555544443211 11111000000 00 0
Q ss_pred CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHH
Q 010575 272 KNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQY 350 (507)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 350 (507)
.. ....+..+.. +...|++++|...|+++.+..... +..++..+...+...|++++|+..++++... .+.+...+
T Consensus 179 ~~-~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 254 (368)
T 1fch_A 179 AG-LGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLW 254 (368)
T ss_dssp --------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hc-ccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHH
Confidence 00 0001112333 338899999999999998753221 4788899999999999999999999999874 24457889
Q ss_pred HHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----------CchHH
Q 010575 351 GCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-----------SGNYA 417 (507)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~ 417 (507)
..+...+...|++++|...|+++ ... .+...+..+..++...|++++|...+++++++.|++ ..+|.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 99999999999999999999987 333 467789999999999999999999999999988887 78999
Q ss_pred HHHHHHHHcCCchHHHHHHHHH
Q 010575 418 ILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
.++.+|.+.|++++|..++++.
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999999999988643
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=1.6e-17 Score=162.51 Aligned_cols=363 Identities=10% Similarity=-0.032 Sum_probs=304.4
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHc----cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChHHHH
Q 010575 60 AVILYNKIQASALRPDNYSFPFVLKAVVK----LSTIELGREIHCQTVGTGLDSDVHVVAALIQMYAS----CKCIYDAR 131 (507)
Q Consensus 60 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 131 (507)
++..++...+. .++..+..+...+.. .+++++|...|+...+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 45556655553 366777777777777 899999999999998875 56788889999998 89999999
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----CCChhHHHHHHHHHh
Q 010575 132 KVFDELSLRVWNVAVWNTMVAGYAK----VGDLNNARALFELMTE-KNVISWTTLIAGYAQ----MDQPNEAITLFRRMQ 202 (507)
Q Consensus 132 ~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~ 202 (507)
..|++..+.+ +...+..+...|.. .+++++|+..|++..+ .++.++..+...|.. .+++++|++.|++..
T Consensus 100 ~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 100 IWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 9999987654 66777888888888 8899999999998775 467788889998987 889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-
Q 010575 203 VENVKPDEIAMLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK----SGKIGKALQVFENMKN- 273 (507)
Q Consensus 203 ~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~- 273 (507)
+.| +...+..+...|.. .++.++|...++...+.+ +...+..+...|.. .+++++|...|+...+
T Consensus 179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 865 56777788888887 899999999999998875 45667778888886 8899999999998765
Q ss_pred CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhhCCC
Q 010575 274 KSVITWTTMIAGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCHV-----GLVELGRRYFNIMKSRYGIE 344 (507)
Q Consensus 274 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~ 344 (507)
.+...+..+...|.. .++.++|+..|++..+.| +...+..+...+... +++++|...|++..+.
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~---- 325 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ---- 325 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----
Confidence 466778888888888 899999999999998764 556777777777776 8999999999999874
Q ss_pred CChhHHHHHHHHHhhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 345 PKIEQYGCMIDLLGRAG---YLQEAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 345 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
.+...+..+...|...| ++++|.++|++.-...++..+..+...|.. .+++++|...++++.+.+ ++.++.
T Consensus 326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 35667788888888766 889999999988333678899999999988 899999999999998764 578999
Q ss_pred HHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 010575 418 ILSNIYAI----LGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 418 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 444 (507)
.|+.+|.+ .+++++|.++|++..+.+.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999 8999999999999987663
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.6e-19 Score=165.10 Aligned_cols=219 Identities=16% Similarity=0.114 Sum_probs=69.3
Q ss_pred ccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHH
Q 010575 22 SLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQ 101 (507)
Q Consensus 22 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 101 (507)
+.|++++|.++++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6678999999999986664 8999999999999999999999652 5777889999999999999999998777
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH
Q 010575 102 TVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTL 181 (507)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 181 (507)
..+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+ ..|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 7664 3456778889999999999988887775 356668888888888888888888888876 367778
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI 261 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (507)
+.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.|++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCH
Confidence 88888888888888887777 2567777777777777777777433322 111222222344445444555
Q ss_pred HHHHHHHHhc
Q 010575 262 GKALQVFENM 271 (507)
Q Consensus 262 ~~A~~~~~~~ 271 (507)
++|..+++..
T Consensus 224 eEai~lLe~a 233 (449)
T 1b89_A 224 EELITMLEAA 233 (449)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=3.4e-17 Score=161.87 Aligned_cols=408 Identities=10% Similarity=0.026 Sum_probs=279.7
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC--C-CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--P-DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVL 83 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 83 (507)
+-|...|..++.. .+.|++++|+.+|+.+.. | +...|..++..+.+.|++++|..+|+++... .|+...|...+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 4466788888874 778889999999988654 3 5567888888888889999999999988874 46766666666
Q ss_pred HHH-HccCCcHHHHH----HHHHHHHc-CCCC-cHHHHHHHHHHHHh---------cCChHHHHHHHHhcccCCCCh---
Q 010575 84 KAV-VKLSTIELGRE----IHCQTVGT-GLDS-DVHVVAALIQMYAS---------CKCIYDARKVFDELSLRVWNV--- 144 (507)
Q Consensus 84 ~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~p~~--- 144 (507)
... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++... .|..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~ 165 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIE 165 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHH
Confidence 433 34567766654 66666543 4433 45677777766554 6788888888888877 3432
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH------hHCC---CCCCH-----
Q 010575 145 AVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM------QVEN---VKPDE----- 210 (507)
Q Consensus 145 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m------~~~~---~~~~~----- 210 (507)
..|..........|. ..+..++. ...+++..|..+++.. .+.. ++|+.
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 223222221111110 11111111 0223455566555542 2211 23331
Q ss_pred ---HHHHHHHHHHhc----cCCH----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHH
Q 010575 211 ---IAMLAALSACAQ----LGAV----ELGEWIHNYIEQYGLNTIVPLNNALIDMYAK-------SGKIG-------KAL 265 (507)
Q Consensus 211 ---~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~ 265 (507)
..|...+..... .++. +.+..++++++... +.+...|..++..+.+ .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 233333332221 1222 36677888888764 5567788888888775 68876 899
Q ss_pred HHHHhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 266 QVFENMKN---K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPN-E-ITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 266 ~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
.+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99998764 3 5678999999999999999999999999985 454 3 5788888888889999999999999985
Q ss_pred hhCCCC-ChhHHHHHHHH-HhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc-
Q 010575 340 RYGIEP-KIEQYGCMIDL-LGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG- 414 (507)
Q Consensus 340 ~~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~- 414 (507)
. +| +...|...+.. +...|++++|..+|++. ...| ++..|..++..+.+.|+.++|..+|+++++..|.++.
T Consensus 385 ~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 385 D---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp C---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred c---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 3 33 33333332222 34689999999999987 3334 6788999999999999999999999999998877665
Q ss_pred ---hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 415 ---NYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 415 ---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
+|...+....+.|+.+.+.++.+++.+.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888899999999999888643
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=6.7e-17 Score=165.92 Aligned_cols=380 Identities=12% Similarity=0.094 Sum_probs=271.1
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHhccCCC-C-----CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHH
Q 010575 9 NNHLLSRFIDSCSSLGFSDYAYSIFTHKSK-P-----DVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFV 82 (507)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 82 (507)
||.-....+.+|...|.+.+|.++++++.- | +....+.++....+. +..+..+..++.-. .....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 444445677777777888888888877552 2 224455566666655 44555555544432 113446
Q ss_pred HHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHH
Q 010575 83 LKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 83 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 162 (507)
...+...|.+++|..+|++.. ......+.++. ..|++++|.++.+++. +..+|..+..++...|++++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHH
Confidence 677778888888888887751 12222233322 6778888888888664 56788888888888888888
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 010575 163 ARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN 242 (507)
Q Consensus 163 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (507)
|++.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++....+. + .
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 88888765 567778888888888899988888888776654 33333335777888888887544332 1 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
++...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45556667888888889999999888875 47888888888889999998888866 35578888888888
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHH--HcCCHHHH
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASN--IYGDVELG 398 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~--~~g~~~~A 398 (507)
..|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +..| ....|.-+...+. +.++..++
T Consensus 1262 e~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 888888887765532 346667778899999999999999999776 4444 3345655666554 44567777
Q ss_pred HHHHHHHhccCC-----CCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 399 ECALQHLIKLEP-----HNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 399 ~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
.+.|..-..+.| ++...|..++..|.+.|+++.|...+
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 777777777666 56778999999999999999988543
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=4.4e-17 Score=161.07 Aligned_cols=382 Identities=11% Similarity=0.049 Sum_probs=260.9
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHhccCCC--CCcccHHHHHHHH-HcCCCchHHHH----HHHHHHHc-CCCCC-c
Q 010575 6 LDQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK--PDVYLYNTTIKAL-CQTDNPLNAVI----LYNKIQAS-ALRPD-N 76 (507)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~~-~~~p~-~ 76 (507)
.|.+...|..++..+.+.|++++|+.+|++... |+...|...+... ...|+.+.|.+ +|+..... |..|+ .
T Consensus 42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~ 121 (530)
T 2ooe_A 42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121 (530)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccH
Confidence 356777899999999999999999999999765 7777788777533 45688888776 77776653 55443 4
Q ss_pred ccHHHHHHHHHc---------cCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhH
Q 010575 77 YSFPFVLKAVVK---------LSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVW 147 (507)
Q Consensus 77 ~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 147 (507)
..|...+....+ .|+++.|..+|+..++.........|..........|. ..+..++..
T Consensus 122 ~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~----------- 189 (530)
T 2ooe_A 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIED----------- 189 (530)
T ss_dssp HHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------
T ss_pred HHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------
Confidence 556666665544 68899999999999883111112344333322111111 111111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh-------cC------CCC--------hhHHHHHHHHHHhC----CCh----hHHHHHH
Q 010575 148 NTMVAGYAKVGDLNNARALFEL-------MT------EKN--------VISWTTLIAGYAQM----DQP----NEAITLF 198 (507)
Q Consensus 148 ~~li~~~~~~~~~~~A~~~~~~-------~~------~~~--------~~~~~~li~~~~~~----~~~----~~a~~~~ 198 (507)
+.+++..|..++.. +. .|+ ...|...+...... ++. +++..+|
T Consensus 190 --------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 190 --------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp --------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 11233334333332 11 111 23444444333222 222 3677788
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 010575 199 RRMQVENVKPDEIAMLAALSACAQ-------LGAVE-------LGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA 264 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 264 (507)
++.+... +.+...|...+..+.+ .|+++ .|..+++...+.-.+.+...+..++..+.+.|++++|
T Consensus 262 ~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 262 EQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 8887753 3456677777776664 68876 8888888888633355688888899999999999999
Q ss_pred HHHHHhcCC--C-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHH
Q 010575 265 LQVFENMKN--K-SV-ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA-CCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 265 ~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~ 339 (507)
..+|+++.+ | +. ..|..++..+.+.|+.++|..+|++..+.. +.+...+...+.. +...|++++|..+|+...+
T Consensus 341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 999998765 3 33 478888888889999999999999998762 2233333332222 3358999999999999987
Q ss_pred hhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 340 RYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.. +.++..|..++..+.+.|+.++|..+|+++ +..| ....|...+......|+.+.+..+.+++.+..|+
T Consensus 420 ~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 420 KY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 53 346788999999999999999999999987 2233 2458888888888999999999999999998885
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=1e-17 Score=163.27 Aligned_cols=214 Identities=10% Similarity=-0.009 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH--------------
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLA-------------- 287 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~-------------- 287 (507)
+++.|...+++..... +.+..++..+...|...|++++|...|++..+ .+..++..+...|.
T Consensus 228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444444444433 23334444445555555555555555544432 12233333333322
Q ss_pred -----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChh----HHHHHHH-HH
Q 010575 288 -----LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE----QYGCMID-LL 357 (507)
Q Consensus 288 -----~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~-~~ 357 (507)
..+..++|...+++..+.. +.+..++..+...+...|++++|+..|+++.+. .|+.. .+..+.. .+
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHH
Confidence 1234577888888877653 224456778888999999999999999998864 33322 2333332 23
Q ss_pred hhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 358 GRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
...|++++|+..|++. .+.|+...... ....+..++++.++.+|+++.+|..|+.+|...|++++|++.|
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678999999999887 55665443322 2345567788889999999999999999999999999999999
Q ss_pred HHHHhCCCccCCceeE
Q 010575 437 KVMRDMGVKKMPGCSY 452 (507)
Q Consensus 437 ~~~~~~~~~~~~~~~~ 452 (507)
++..+.+.......+|
T Consensus 454 ~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 454 ERGLESGSLIPSASSW 469 (472)
T ss_dssp ----------------
T ss_pred HHHHhcCCCCCcHhhc
Confidence 9998766654444444
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=3.6e-16 Score=160.62 Aligned_cols=352 Identities=14% Similarity=0.095 Sum_probs=280.0
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHcCC--CCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 010575 42 YLYNTTIKALCQTDNPLNAVILYNKIQASAL--RPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119 (507)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (507)
.--...+++|...|.+.+|+++|++..-.+- .-+...-+.++.+..+. +.....++....... + ...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~ 1057 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIAN 1057 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHH
Confidence 3445677888999999999999999884321 11234455566666666 556666666555321 1 344778
Q ss_pred HHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHH
Q 010575 120 MYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFR 199 (507)
Q Consensus 120 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 199 (507)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|++.|.
T Consensus 1058 Iai~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88999999999999999752 2333333333 7789999999999874 46789999999999999999999996
Q ss_pred HHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 010575 200 RMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITW 279 (507)
Q Consensus 200 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 279 (507)
+. .|...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+. ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 64 467788899999999999999999999888765 33333445999999999998655443 45677778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (507)
..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..+|..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhh
Confidence 88999999999999999999984 478999999999999999999998773 56899999999999
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc--CCchHHHHHHH
Q 010575 360 AGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL--GRWNESGKIRK 437 (507)
Q Consensus 360 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 437 (507)
.|++..|....... ..++..+..++..|.+.|.+++|+.+++.+++++|.+...|..|+.+|.+- ++..|+.++|.
T Consensus 1263 ~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999987754 456677889999999999999999999999999999999998888888764 56667777665
Q ss_pred H
Q 010575 438 V 438 (507)
Q Consensus 438 ~ 438 (507)
.
T Consensus 1341 ~ 1341 (1630)
T 1xi4_A 1341 S 1341 (1630)
T ss_pred H
Confidence 4
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.1e-18 Score=164.13 Aligned_cols=257 Identities=9% Similarity=-0.070 Sum_probs=172.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010575 178 WTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 257 (507)
Q Consensus 178 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (507)
|..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444444444444444444444444432 2233444444444444444444444444444433 2334444555555555
Q ss_pred cCCHHHHHHHHHhcCCC-------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc
Q 010575 258 SGKIGKALQVFENMKNK-------------SVITWTTMIAGLALHGLGREALDMFSRMERARVK-PNEITFIAILSACCH 323 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~ 323 (507)
.|++++|...|+++.+. ....+..+...+...|++++|...++++.+.... ++..++..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555554431 1223445677888899999999999999886322 157888999999999
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
.|++++|+..|+++.+. .+.+..+|..+..+|...|++++|...|+++ ...| +..+|..+..+|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999874 3456788999999999999999999999987 3344 578899999999999999999999
Q ss_pred HHHHhccCCC------------CCchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 402 LQHLIKLEPH------------NSGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 402 ~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
+++++++.|+ +..+|..++.++...|+.+.+.++.++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999988876 367899999999999999999888765
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=2.9e-17 Score=148.37 Aligned_cols=268 Identities=11% Similarity=-0.021 Sum_probs=198.9
Q ss_pred HhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010575 155 AKVGDLNNARALFELMTEKNV----ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE 230 (507)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 230 (507)
...|++..|+..++.....++ .....+..+|...|+++.|+..++. . -+|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 345556666665555443222 2334566777777777777765543 1 3456667777777777778888888
Q ss_pred HHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010575 231 WIHNYIEQYGL-NTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP 309 (507)
Q Consensus 231 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 309 (507)
..++.+...+. +.+...+..+..+|...|++++|++.|+. ..+...+..++..+.+.|++++|...|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 88888777654 33556666777889999999999999988 567788999999999999999999999999886 35
Q ss_pred CHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHH
Q 010575 310 NEITF---IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGS 384 (507)
Q Consensus 310 ~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 384 (507)
+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|...|+++ ...| ++.++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 53211 12334445669999999999999974 4667889999999999999999999999997 3344 7778999
Q ss_pred HHHHHHHcCCHHH-HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010575 385 LLAASNIYGDVEL-GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 385 l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..-|
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 9999999999865 6789999999999987544 3455666666665443
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=1.3e-18 Score=163.73 Aligned_cols=223 Identities=12% Similarity=0.032 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC
Q 010575 114 VAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMD 189 (507)
Q Consensus 114 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 189 (507)
+..+...+.+.|++++|...|+++....| +..+|..+..++...|++++|+..|+++.+ .+..++..+...+...|
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444433 334444444445555555555555544432 24556666666677777
Q ss_pred ChhHHHHHHHHHhHCCCCCCHHHHHH---------------HHHHHhccCCHHHHHHHHHHHHHcCCCC-chhHHHHHHH
Q 010575 190 QPNEAITLFRRMQVENVKPDEIAMLA---------------ALSACAQLGAVELGEWIHNYIEQYGLNT-IVPLNNALID 253 (507)
Q Consensus 190 ~~~~a~~~~~~m~~~~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 253 (507)
++++|.+.++++...... +...+.. .+..+...|++++|...++.+.+..... +..++..+..
T Consensus 147 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp CHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 777777777766664311 1111100 1122224455555555555555443111 3444444444
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 010575 254 MYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELG 330 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 330 (507)
+|...|++++|...|+++.+ .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 55555555555544444332 223344444444444444444444444444321 12334444444444444444444
Q ss_pred HHHHHHhH
Q 010575 331 RRYFNIMK 338 (507)
Q Consensus 331 ~~~~~~~~ 338 (507)
...|+++.
T Consensus 305 ~~~~~~al 312 (368)
T 1fch_A 305 VEHFLEAL 312 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=3.3e-17 Score=151.16 Aligned_cols=330 Identities=13% Similarity=0.065 Sum_probs=170.5
Q ss_pred CChHHHHHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 010575 8 QNNHLLSRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVV 87 (507)
Q Consensus 8 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 87 (507)
+++.+|..|..++.+.|++++|++.|.+. +|...|..++.++...|++++|+..++..++. .+++.+.+.++.+|.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 55679999999999999999999999764 56779999999999999999999988877763 466788999999999
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALF 167 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 167 (507)
+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.++.+.|++++|.+.+
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~ 171 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGA 171 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHH
Confidence 9999999988874 367789999999999999999999999976 47999999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhH
Q 010575 168 ELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPL 247 (507)
Q Consensus 168 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 247 (507)
+++ .++.+|..++.+|...|+++.|......+. +.| .....++..|.+.|.++++..+++...... +-...+
T Consensus 172 ~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a--d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ 243 (449)
T 1b89_A 172 RKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 243 (449)
T ss_dssp HHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHH
T ss_pred HHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHH
Confidence 999 488999999999999999999966554422 334 345578899999999999999999988766 666788
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHHhcCC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHH
Q 010575 248 NNALIDMYAKS--GKIGKALQVFENMKN--------KSVITWTTMIAGLALHGLGREALDMFSRMERA-RVKPNEITFIA 316 (507)
Q Consensus 248 ~~~l~~~~~~~--~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ 316 (507)
|+.|.-+|++- ++..+..+.|..-.. .+...|..+.-.|...++++.|... |.++ ....+...|..
T Consensus 244 ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~ 320 (449)
T 1b89_A 244 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKD 320 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHH
Confidence 88888888764 355666666654433 2456899999999999999998863 4554 12234444444
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMP 374 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (507)
++. +..+.+--.+...-.... .+...+.|+.++...=+...+..+|++.+
T Consensus 321 ~~~---kv~n~elyYkai~fyl~~-----~p~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 321 IIT---KVANVELYYRAIQFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHH---HCSSTHHHHHHHHHHHHH-----CGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HHh---chhHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 443 344433333222222222 23345666666666666777777776663
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=6.3e-18 Score=152.71 Aligned_cols=246 Identities=11% Similarity=0.057 Sum_probs=203.1
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPDE--IAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 259 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 259 (507)
+.-....|++..|+..++..... .|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44567789999999999887553 3443 3556678899999999999876644 24667888889999999999
Q ss_pred CHHHHHHHHHhcCC----C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 010575 260 KIGKALQVFENMKN----K-SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 334 (507)
Q Consensus 260 ~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (507)
+.++|.+.++.+.. | +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 3 556778888999999999999999987 457788999999999999999999999
Q ss_pred HHhHHhhCCCCChhH---HHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 335 NIMKSRYGIEPKIEQ---YGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 335 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
+++.+. .|+... ...++..+...|++++|..+|+++ ....+...|+.+..++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 355321 123344455669999999999998 334578899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchH-HHHHHHHHHhC
Q 010575 410 PHNSGNYAILSNIYAILGRWNE-SGKIRKVMRDM 442 (507)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 442 (507)
|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986 57899888643
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=3.7e-18 Score=157.67 Aligned_cols=256 Identities=9% Similarity=-0.048 Sum_probs=174.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 258 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (507)
..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 334444444444444444444444332 1233344444444444444444444444444432 22344444445555555
Q ss_pred CCHHHHHHHHHhcCCC---ChhHHHH-------------H-HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010575 259 GKIGKALQVFENMKNK---SVITWTT-------------M-IA-GLALHGLGREALDMFSRMERARVKPNEITFIAILSA 320 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~~---~~~~~~~-------------l-~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 320 (507)
|++++|...|+.+.+. +...+.. + .. .+...|++++|...++++.+.. +.+...+..+...
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 5555555555444321 1111111 1 22 3667788999999999988763 3367888899999
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A 398 (507)
+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ... .+...+..+...+...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999864 2446788899999999999999999999987 323 4678899999999999999999
Q ss_pred HHHHHHHhccCCC------------CCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 399 ECALQHLIKLEPH------------NSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 399 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
...++++++..|+ ++.++..++.++.+.|++++|..++++.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999998 7889999999999999999999998654
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=2e-18 Score=162.27 Aligned_cols=258 Identities=13% Similarity=-0.006 Sum_probs=164.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 010575 144 VAVWNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSAC 220 (507)
Q Consensus 144 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 220 (507)
...|..+...+.+.|++++|+..|+++.+ .+..+|..+...|...|++++|...|+++.+.. +.+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455555555555666666655555542 244556666666666666666666666665543 23455566666666
Q ss_pred hccCCHHHHHHHHHHHHHcCCC---------CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHH
Q 010575 221 AQLGAVELGEWIHNYIEQYGLN---------TIVPLNNALIDMYAKSGKIGKALQVFENMKN--K---SVITWTTMIAGL 286 (507)
Q Consensus 221 ~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~ 286 (507)
...|++++|...++.+.+.... .....+..+...|...|++++|...|+++.+ | +..+|..+...|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6666666666666666554210 0112233456677777778888877777654 2 466777788888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHH
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (507)
...|++++|+..|+++.+.. +.+..++..+..++...|++++|+..|+++.+. .+.+..++..+..+|.+.|++++|
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888877752 335677888888888888888888888888763 233467778888888888888888
Q ss_pred HHHHhhC-CCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010575 367 EKLLRRM-PFEA-------------NAAIWGSLLAASNIYGDVELGECALQHL 405 (507)
Q Consensus 367 ~~~~~~~-~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (507)
...|+++ ...| +...|..+..++...|+.+.+..+.++.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 8888876 1111 2567888888888899988888777664
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.7e-17 Score=158.01 Aligned_cols=367 Identities=9% Similarity=-0.049 Sum_probs=237.1
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHHc-----C--CCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHcC-----
Q 010575 40 DVYLYNTTIKALCQTDNPLNAVILYNKIQAS-----A--LRP-DNYSFPFVLKAVVKLSTIELGREIHCQTVGTG----- 106 (507)
Q Consensus 40 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 106 (507)
....||.|...+...|++++|++.|++..+. + ..| ...+|..+...|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567899999999999999999999886542 1 123 23568888889999999999999988876531
Q ss_pred C-C-CcHHHHHHHHHHHHhc--CChHHHHHHHHhcccCCC-ChhhHHHHHHH---HHhcCCHHHHHHHHHhcCC---CCh
Q 010575 107 L-D-SDVHVVAALIQMYASC--KCIYDARKVFDELSLRVW-NVAVWNTMVAG---YAKVGDLNNARALFELMTE---KNV 175 (507)
Q Consensus 107 ~-~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p-~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~---~~~ 175 (507)
. . ....++..+..++... +++++|+..|++.....| +...+..+... +...++.++|++.+++..+ .+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1 1 1345566555555544 568999999999888777 45555555444 4456777888888877653 345
Q ss_pred hHHHHHHHHHHh----CCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHH
Q 010575 176 ISWTTLIAGYAQ----MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNAL 251 (507)
Q Consensus 176 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 251 (507)
..+..+...+.. .+++++|.+.+++..... +.+...+..+...+...|+++.|...+....+.. +.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 566666555544 467889999999887764 4566778888899999999999999999988875 4456666666
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010575 252 IDMYAKS-------------------GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP 309 (507)
Q Consensus 252 ~~~~~~~-------------------~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 309 (507)
..+|... +..+.|...|+...+ .+..++..+...|...|++++|+..|++..+....|
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 6665432 235667777776553 345678889999999999999999999998864433
Q ss_pred CHH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHH
Q 010575 310 NEI--TFIAILS-ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGS 384 (507)
Q Consensus 310 ~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~ 384 (507)
... .+..+.. .....|++++|+..|++..+ +.|+........ ..+.+++++. .. +.++.+|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 221 2223322 24577999999999999885 355543322222 2333444433 22 236678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 420 (507)
+...|...|++++|++.|+++++++|.+|.+...++
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHCC------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999999888776665
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=9.2e-17 Score=148.26 Aligned_cols=228 Identities=12% Similarity=-0.001 Sum_probs=112.8
Q ss_pred ccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHh
Q 010575 77 YSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAK 156 (507)
Q Consensus 77 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~ 156 (507)
..+..+...+...|++++|..+++.+.+..+. +..++..+..++...|++++|...|+++....|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------------- 86 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-------------- 86 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--------------
Confidence 34555556666666666666666666665432 455566666666666666666666666554433
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHH-------------H-HH-HHh
Q 010575 157 VGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLA-------------A-LS-ACA 221 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------------l-l~-~~~ 221 (507)
.+..++..+...+...|++++|.+.++++.+.... +...+.. + .. .+.
T Consensus 87 ----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 87 ----------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTT
T ss_pred ----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 13334444555555555555555555555543211 1111111 1 11 244
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHH
Q 010575 222 QLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDM 298 (507)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (507)
..|++++|...++.+.+.. +.+..++..+...|...|++++|...++.+.+ .+..+|..+...+...|++++|...
T Consensus 150 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555666666666555543 22344445555555555555555555544432 2233444444445555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 299 FSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 299 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 229 ~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 229 YNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55444431 1233444444444444455555555444444
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=2.3e-16 Score=136.16 Aligned_cols=195 Identities=13% Similarity=0.037 Sum_probs=155.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAIL 318 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 318 (507)
+++...+..+...+.+.|++++|...|+...+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667777888888899999999999988765 356788888899999999999999999988763 33567888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHH
Q 010575 319 SACCHV-----------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLL 386 (507)
Q Consensus 319 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 386 (507)
.++... |++++|+..+++..+. .+-+...+..+..+|...|++++|...|+++ ....++..+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999864 2345788889999999999999999999987 2127888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
.++...|++++|+..++++++.+|+++.++..++.++.+.|++++|++.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999765
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=7.8e-16 Score=136.74 Aligned_cols=217 Identities=9% Similarity=-0.041 Sum_probs=157.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----hhHHHHH
Q 010575 213 MLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--K----S----VITWTTM 282 (507)
Q Consensus 213 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~----~~~~~~l 282 (507)
+..+...+...|++++|...++.+.+.. .+...+..+..+|...|++++|...|+...+ | + ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444455555555555444444 3444455555555555555555555555443 1 1 4567777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 010575 283 IAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 362 (507)
Q Consensus 283 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (507)
...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+... .+.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888774 4453 3455668888999999888752 23356778888888999999
Q ss_pred HHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 363 LQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 363 ~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+++|...++++ .. ..+...|..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|.+.+++..
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999887 22 33677889999999999999999999999999999999999999999999999999999999886
Q ss_pred hC
Q 010575 441 DM 442 (507)
Q Consensus 441 ~~ 442 (507)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.4e-16 Score=138.36 Aligned_cols=236 Identities=10% Similarity=-0.051 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--Cc----hhHHH
Q 010575 176 ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN--TI----VPLNN 249 (507)
Q Consensus 176 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 249 (507)
..|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456677778888888888888888877765 66677777888888888888888888877764311 11 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVEL 329 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 329 (507)
.+..+|...|++++|...|+...+.+.. ...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 8888888888888888888877652211 234666788899999999988752 2245677888888999999999
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010575 330 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
|...++++.+. .+.+...+..+...|...|++++|...++++ ...| +...|..+...+...|++++|...++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999874 3446788889999999999999999999987 3334 577899999999999999999999999999
Q ss_pred cC------CCCCchHHHHHH
Q 010575 408 LE------PHNSGNYAILSN 421 (507)
Q Consensus 408 ~~------p~~~~~~~~l~~ 421 (507)
+. |++..++..+..
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHHH
Confidence 88 877666666654
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=5.2e-18 Score=168.86 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHccCChhHHHHHhccCC-------CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHH
Q 010575 10 NHLLSRFIDSCSSLGFSDYAYSIFTHKS-------KPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFV 82 (507)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 82 (507)
..+||+||++||+.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997643 599999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCc-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC-CC------ChhhHHHHHHHH
Q 010575 83 LKAVVKLSTI-ELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR-VW------NVAVWNTMVAGY 154 (507)
Q Consensus 83 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p------~~~~~~~li~~~ 154 (507)
|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+ +++.++++... .| ...+...|.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 789999999999999999999999987766653 44444444332 11 234445566666
Q ss_pred HhcC
Q 010575 155 AKVG 158 (507)
Q Consensus 155 ~~~~ 158 (507)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6544
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=1.9e-15 Score=135.69 Aligned_cols=241 Identities=10% Similarity=-0.034 Sum_probs=184.3
Q ss_pred hCCChhHHHHHHHHHhHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 010575 187 QMDQPNEAITLFRRMQVENV---KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGK 263 (507)
Q Consensus 187 ~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 263 (507)
..|++++|+..|+++.+... +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45677888888888877532 1234567777778888888888888888888765 4567778888888888999999
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 264 ALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 264 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
|...|+.+.+ .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9988888765 35678888999999999999999999999875 444444444555556779999999999888764
Q ss_pred hCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 341 YGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
.+++...+ .++..+...++.++|...++++ ...|+ ...+..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23444444 4777788888999999999887 33332 567888999999999999999999999999998644
Q ss_pred hHHHHHHHHHHcCCchHHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
..+.++...|++++|++.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466888899999998876
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.9e-15 Score=135.59 Aligned_cols=243 Identities=11% Similarity=-0.023 Sum_probs=132.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhc
Q 010575 181 LIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI--VPLNNALIDMYAKS 258 (507)
Q Consensus 181 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 258 (507)
....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+..+|...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3444445555555555555554432 11222344444455555555555555555544221111 12244555555555
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 010575 259 GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFN 335 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 335 (507)
|++++|...|+...+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|...|+
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555443 233455566666666666666666666655541 2234455555523333346666666666
Q ss_pred HhHHhhCCCCChhHHHHHHHHHhhcCC---HHHHHHHHhhC----CCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 336 IMKSRYGIEPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM----PFEAN------AAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
++.+. .+.+...+..+...+...|+ +++|...++++ ...|+ ...|..+...|...|++++|...+
T Consensus 167 ~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 167 KVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66653 12234555556666666665 55555555544 11122 246777888899999999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcC
Q 010575 403 QHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 403 ~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+++++++|+++.++..+..+....+
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999988888876665543
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=5.8e-15 Score=142.17 Aligned_cols=348 Identities=8% Similarity=-0.040 Sum_probs=142.3
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 010575 47 TIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI---ELGREIHCQTVGTGLDSDVHVVAALIQMYAS 123 (507)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (507)
+...+.+.|++++|+..|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455566667777777777666644 333444455555555555 6666666666543 33444455554444
Q ss_pred cC-----ChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHH---HHHHHHhcCC-CChhHHHHHHHHHHhCCChhHH
Q 010575 124 CK-----CIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNN---ARALFELMTE-KNVISWTTLIAGYAQMDQPNEA 194 (507)
Q Consensus 124 ~g-----~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~---A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a 194 (507)
.| ++++|...|++....++ ...+..|...|...+..+. +.+.+....+ .++..+..+...|...+.++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE-GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC-SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 43 55666666666555432 2244455555544433222 2222222211 2344455555555555543333
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----CCHHHHHHH
Q 010575 195 ITLFRRMQVENVKPDEIAMLAALSACAQLG---AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS----GKIGKALQV 267 (507)
Q Consensus 195 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~ 267 (507)
........+.-...+...+..+...|...| +.++|...++...+.| +++...+..|...|... +++++|...
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 332222211111111114444444444455 5555555555555544 22232223344444332 344444444
Q ss_pred HHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh
Q 010575 268 FENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI 347 (507)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 347 (507)
|+.....+...+..+...|. .....+++++|...|++..+. | ++
T Consensus 240 ~~~aa~g~~~a~~~Lg~~~~--------------------------------~~~~~~d~~~A~~~~~~Aa~~-g---~~ 283 (452)
T 3e4b_A 240 LEKIAPGYPASWVSLAQLLY--------------------------------DFPELGDVEQMMKYLDNGRAA-D---QP 283 (452)
T ss_dssp HHHHGGGSTHHHHHHHHHHH--------------------------------HSGGGCCHHHHHHHHHHHHHT-T---CH
T ss_pred HHHHcCCCHHHHHHHHHHHH--------------------------------hCCCCCCHHHHHHHHHHHHHC-C---CH
Confidence 44443223333333333311 002344555555555554432 2 33
Q ss_pred hHHHHHHHHHhhcC-----CHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHHH
Q 010575 348 EQYGCMIDLLGRAG-----YLQEAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHNSGNYAI 418 (507)
Q Consensus 348 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 418 (507)
..+..|...|. .| ++++|..+|++.- ..++..+..|...|.. ..++++|...|+++.+ +.++.+...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~ 359 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFA 359 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHH
Confidence 34444444443 23 5555555555554 3344444444444433 2255555555555543 223444555
Q ss_pred HHHHHHH----cCCchHHHHHHHHHHhCC
Q 010575 419 LSNIYAI----LGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 419 l~~~~~~----~g~~~~A~~~~~~~~~~~ 443 (507)
|+.+|.. ..+.++|..+++...+.|
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 5555443 234555555555554443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=3.5e-15 Score=143.72 Aligned_cols=307 Identities=9% Similarity=0.018 Sum_probs=190.8
Q ss_pred HHHHHHHccCChhHHHHHhccCCC-CCcccHHHHHHHHHcCCCc---hHHHHHHHHHHHcCCCCCcccHHHHHHHHHccC
Q 010575 15 RFIDSCSSLGFSDYAYSIFTHKSK-PDVYLYNTTIKALCQTDNP---LNAVILYNKIQASALRPDNYSFPFVLKAVVKLS 90 (507)
Q Consensus 15 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 90 (507)
.+...+.+.|++++|.+.|++..+ .+...+..|...+...|++ ++|+..|++..+. ++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 356677888999999999988654 4566777788888888888 8999999998863 6666777777555544
Q ss_pred -----CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHH---HHHHhcccCCCChhhHHHHHHHHHhcC----
Q 010575 91 -----TIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDAR---KVFDELSLRVWNVAVWNTMVAGYAKVG---- 158 (507)
Q Consensus 91 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~p~~~~~~~li~~~~~~~---- 158 (507)
++++|...|+...+.|.. ..+..|...|...+..+++. +.+......+ +...+..+...|...+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-CTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCccc
Confidence 788999999999997743 36677888888776654443 3443333221 5667778888888877
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhCC---ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc----CCHHHHHH
Q 010575 159 DLNNARALFELMTEKNVISWTTLIAGYAQMD---QPNEAITLFRRMQVENVKPDEIAMLAALSACAQL----GAVELGEW 231 (507)
Q Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~ 231 (507)
+.+.+..+++.....++.++..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4556666777777778889999999999999 9999999999999987 45666556677777665 79999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHH-H--HhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcC-----ChHHHHHHHHHH
Q 010575 232 IHNYIEQYGLNTIVPLNNALIDM-Y--AKSGKIGKALQVFENMKNK-SVITWTTMIAGLALHG-----LGREALDMFSRM 302 (507)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~-----~~~~A~~~~~~m 302 (507)
.|+... +-+...+..|... | ...+++++|...|++..+. +...+..|...|. .| ++++|+..|++.
T Consensus 239 ~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 239 LLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 999887 3445566667666 3 3466777777766665442 4445555555554 33 556666666554
Q ss_pred HHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHH
Q 010575 303 ERARVKPNEITFIAILSACCH----VGLVELGRRYFNIMKS 339 (507)
Q Consensus 303 ~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 339 (507)
. . -+...+..|...|.. ..++++|...|++..+
T Consensus 314 a-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 314 V-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp T-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred h-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 4 2 233444444444433 2255555555555543
No 43
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=159.08 Aligned_cols=125 Identities=13% Similarity=0.114 Sum_probs=98.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010575 242 NTIVPLNNALIDMYAKSGKIGKALQVFENMK-------NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITF 314 (507)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 314 (507)
.....+|++||++||+.|++++|.++|.+|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678888888888888888888886653 378888888888888888888888888888888888888888
Q ss_pred HHHHHHHhccCcH-HHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHH
Q 010575 315 IAILSACCHVGLV-ELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAE 367 (507)
Q Consensus 315 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 367 (507)
+++|.++++.|+. +.|.++|++|.++ |+.||..+|++++....+.+-++.+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHH
Confidence 8888888888874 6788888888887 88888888888877665554333333
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=1.6e-14 Score=134.88 Aligned_cols=247 Identities=9% Similarity=-0.011 Sum_probs=199.1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010575 175 VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA-VELGEWIHNYIEQYGLNTIVPLNNALID 253 (507)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 253 (507)
...|..+...+.+.|++++|++.|++.+... +-+...|..+..++...|+ +++|+..++++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567778888888899999999999888754 3356677888888888886 999999999888876 556788888889
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCcHHH
Q 010575 254 MYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCH-VGLVEL 329 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~ 329 (507)
++...|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999988775 466789999999999999999999999999863 2367888888888888 566577
Q ss_pred H-----HHHHHHhHHhhCCCCChhHHHHHHHHHhhcC--CHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC--------
Q 010575 330 G-----RRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG--YLQEAEKLLRRMPFEA-NAAIWGSLLAASNIYG-------- 393 (507)
Q Consensus 330 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g-------- 393 (507)
| +..|+++... .+-+...|..+..++...| ++++|.+.++++...| +...+..++..|...|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 7 5788888763 2335678888888888888 6899999888874444 5667888888888764
Q ss_pred C-HHHHHHHHHHH-hccCCCCCchHHHHHHHHHHc
Q 010575 394 D-VELGECALQHL-IKLEPHNSGNYAILSNIYAIL 426 (507)
Q Consensus 394 ~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 426 (507)
+ .++|+.+++++ ++++|.....|..++..+...
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999888999888776654
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.65 E-value=1e-13 Score=124.26 Aligned_cols=225 Identities=8% Similarity=-0.101 Sum_probs=136.0
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchhHHH
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNN 249 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 249 (507)
++.++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555555566666666666666655552 123344444444444 445555555444444432
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLAL----HGLGREALDMFSRMERARVKPNEITFIAILSACCH-- 323 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-- 323 (507)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34445555555555 666666666666666543 45556666666666
Q ss_pred --cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cC
Q 010575 324 --VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRMPFEANAAIWGSLLAASNI----YG 393 (507)
Q Consensus 324 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 393 (507)
.+++++|+..|++..+. + +...+..+...|.. .+++++|...|++.-...+...+..+...|.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 66777777777666653 2 44555566666665 66777777777665212345666667777777 77
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAI----LGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 444 (507)
++++|...++++++.+| +.++..++.+|.+ .|++++|.+++++..+.+.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77777777777777655 5567777777777 7777788877777765544
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.65 E-value=1.5e-14 Score=134.98 Aligned_cols=225 Identities=10% Similarity=0.016 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChhHHHHHHHH
Q 010575 210 EIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK-IGKALQVFENMKN---KSVITWTTMIAG 285 (507)
Q Consensus 210 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~ 285 (507)
...|..+...+...|++++|...++.+++.. +.+..+|+.+..++...|+ +++|+..|+++.+ .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3456777788889999999999999999886 5678889999999999997 9999999999875 466899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh-cCCHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR-AGYLQ 364 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 364 (507)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++.+. -+-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999863 337789999999999999999999999999974 24467889999999999 66657
Q ss_pred HH-----HHHHhhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC--------
Q 010575 365 EA-----EKLLRRM-PFEA-NAAIWGSLLAASNIYG--DVELGECALQHLIKLEPHNSGNYAILSNIYAILG-------- 427 (507)
Q Consensus 365 ~A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 427 (507)
+| +..|+++ ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777776 3445 6778999999998888 689999999998 999999999999999999975
Q ss_pred -CchHHHHHHHHH
Q 010575 428 -RWNESGKIRKVM 439 (507)
Q Consensus 428 -~~~~A~~~~~~~ 439 (507)
.+++|+++++++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 358999999998
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=6.5e-14 Score=123.90 Aligned_cols=137 Identities=13% Similarity=0.001 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
..+..+...+...|++++|...++++...+..| +...+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 183 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMAD 183 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHH
Confidence 344444445555555555555555554422233 2344455555555666666666666655542 1223455555555
Q ss_pred HHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 356 LLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
.+...|++++|...++++ ... .+...+..+...+...|+.++|.+.++++++..|+++..
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 555666666666555554 222 244455555555666666666666666666666665443
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.5e-13 Score=123.23 Aligned_cols=230 Identities=10% Similarity=-0.081 Sum_probs=157.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHh----CCChhHHHHHHHHHhHCCCCCCHHHHHHHH
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTEK-NVISWTTLIAGYAQ----MDQPNEAITLFRRMQVENVKPDEIAMLAAL 217 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 217 (507)
+..++..+...+...|++++|+..|++..++ +..++..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 6778888999999999999999999988765 56788889999999 999999999999999875 667777777
Q ss_pred HHHhc----cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChH
Q 010575 218 SACAQ----LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGR 293 (507)
Q Consensus 218 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (507)
..+.. .+++++|...++...+.+ +...+..+...|... ....++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCHH
Confidence 77777 788888888887776654 344444444444440 00045555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----cCCHHH
Q 010575 294 EALDMFSRMERARVKPNEITFIAILSACCH----VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQE 365 (507)
Q Consensus 294 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 365 (507)
+|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. .+...+..+...|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 5555555555543 34445555555554 56666666666666543 234555566666666 667777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCC
Q 010575 366 AEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 366 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~ 412 (507)
|...|++.-...+...+..+...|.. .+++++|...++++.+.+|++
T Consensus 205 A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 205 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77766665111235566666677776 777778888888877777663
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=3.7e-14 Score=122.21 Aligned_cols=194 Identities=15% Similarity=0.037 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010575 174 NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALID 253 (507)
Q Consensus 174 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 253 (507)
++..+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33455555556666666666666666655543 2344455555555566666666666666655554 334445555555
Q ss_pred HHHhc-----------CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010575 254 MYAKS-----------GKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILS 319 (507)
Q Consensus 254 ~~~~~-----------~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 319 (507)
+|... |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 566666666555443 234455556666666666666666666666554 45555666666
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
++...|++++|+..|+++.+. .+.+...+..+...+.+.|++++|...|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666542 1234455555666666666666666655543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=7.7e-15 Score=129.06 Aligned_cols=141 Identities=16% Similarity=0.068 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 344444444445555555555555544432 223444445555555555555555555555442 12234444455555
Q ss_pred HhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 010575 357 LGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 420 (507)
+.+.|++++|...++++ . ...+..++..+...+...|++++|...++++++..|+++.++..+.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 55555555555555544 1 1123445555555555555555555555555555555555444443
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=2e-14 Score=128.75 Aligned_cols=227 Identities=10% Similarity=-0.035 Sum_probs=186.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hHHHHHHHH
Q 010575 212 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSV----ITWTTMIAG 285 (507)
Q Consensus 212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~ 285 (507)
.+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+...+ ++. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34566778899999999999999999875 44566788899999999999999999998766 222 358899999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
+...|++++|+..|++..+.. +.+..++..+...+...|++++|+..|+++.+. .+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998863 335678999999999999999999999999853 34456777777734445569999
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccC---CCC-----CchHHHHHHHHHHcCCchHH
Q 010575 366 AEKLLRRM-PFEA-NAAIWGSLLAASNIYGD---VELGECALQHLIKLE---PHN-----SGNYAILSNIYAILGRWNES 432 (507)
Q Consensus 366 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A 432 (507)
|.+.|+++ ...| +...+..+...+...|+ +++|...++++++.. |+. ..++..++.+|.+.|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988 3344 46788888888888888 888999999998765 442 25788899999999999999
Q ss_pred HHHHHHHHhC
Q 010575 433 GKIRKVMRDM 442 (507)
Q Consensus 433 ~~~~~~~~~~ 442 (507)
.+++++..+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999743
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=4.7e-14 Score=124.83 Aligned_cols=197 Identities=6% Similarity=-0.063 Sum_probs=169.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
...+..+...|...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566777888888888888888887654 356788889999999999999999999988763 33678888999999
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A 398 (507)
...|++++|..+++++... +..| +...+..+...+...|++++|...++++ ... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999862 3445 4677888999999999999999999987 323 3678899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
...++++++..|++...+..++.++.+.|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997543
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=6.3e-14 Score=121.47 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
...+..+...+...|++++|...|+.+.+ .+...|..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44455555666666666666666665443 234566666666777777777777777766542 23556666677777
Q ss_pred hcc-CcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 010575 322 CHV-GLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 322 ~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 397 (507)
... |++++|...++++.+. +..|+ ...+..+...+...|++++|...++++ ...| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 7777777777777652 22332 456666777777777777777777766 2223 46667777777777777777
Q ss_pred HHHHHHHHhccCC-CCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 398 GECALQHLIKLEP-HNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 398 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
|...++++++..| +++..+..++..+...|+.++|..+++.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777777 7777777777777777777777777777653
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=8.1e-15 Score=139.96 Aligned_cols=261 Identities=9% Similarity=-0.067 Sum_probs=173.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCCchhHHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPDE----IAMLAALSACAQLGAVELGEWIHNYIEQY----G-LNTIVPLNNA 250 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 250 (507)
.+...+...|++++|...|++..+.+. .+. ..+..+...+...|+++.|...+++..+. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344555666666666666666555421 121 24555555566666666666666555432 1 1222345556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKNK---------SVITWTTMIAGLALHGL-----------------GREALDMFSRMER 304 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~ 304 (507)
+...|...|++++|...|++..+- ...++..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666677777777777666655431 12466677777777777 7788777777544
Q ss_pred C----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC--
Q 010575 305 A----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-- 373 (507)
Q Consensus 305 ~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 373 (507)
. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...++++
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1111 2246777778888889999999888887753211112 236778888899999999999988876
Q ss_pred --CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 374 --PFEA----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 374 --~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+... ...++..+...+...|++++|...+++++++.+.. ..++..++.+|.+.|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1111 24577788888999999999999999998765442 34788999999999999999999998863
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.62 E-value=1.3e-14 Score=127.61 Aligned_cols=196 Identities=10% Similarity=0.047 Sum_probs=155.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010575 244 IVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 320 (507)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 320 (507)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566677778888888888888887754 356788888899999999999999999988763 3467888899999
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
+...|++++|...++++.+. .+.+...+..+...+.+.|++++|...++++ .. ..+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999874 3456788899999999999999999999987 22 34678899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999754
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=1.5e-13 Score=119.04 Aligned_cols=205 Identities=11% Similarity=-0.046 Sum_probs=140.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHH
Q 010575 212 AMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLAL 288 (507)
Q Consensus 212 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 288 (507)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+.+.+ .+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33444444444455555555554444433 23344555555566666666666666655443 345566777777788
Q ss_pred c-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHH
Q 010575 289 H-GLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 289 ~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (507)
. |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 888888888888777333343 466777888888888899998888888764 234577788888888899999999
Q ss_pred HHHHhhC-CC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 010575 367 EKLLRRM-PF-E-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAIL 419 (507)
Q Consensus 367 ~~~~~~~-~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 419 (507)
...++++ .. . .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9988877 22 2 4666777777788899999999999999998999977665443
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=3.4e-14 Score=135.22 Aligned_cols=128 Identities=12% Similarity=-0.022 Sum_probs=64.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCC----HH
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AA 380 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~ 380 (507)
++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++. +..++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 4444555555555555555555555432111111 124455555555566666665555544 10111 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 381 IWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++..+...+...|++++|...+++++++.+.. ..++..++.+|.+.|++++|.+++++..
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555566666666666666655443322 3345555666666666666666655543
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=8.7e-14 Score=116.61 Aligned_cols=166 Identities=15% Similarity=0.073 Sum_probs=139.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 010575 275 SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI 354 (507)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 354 (507)
+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...+..+... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45678888888889999999999999888753 236678888888899999999999999888763 344567777788
Q ss_pred HHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHH
Q 010575 355 DLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 432 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 432 (507)
..+...++++.|...+.+. ... .+...+..+...+...|++++|+..++++++++|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8888999999999998887 323 36778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 010575 433 GKIRKVMRDMG 443 (507)
Q Consensus 433 ~~~~~~~~~~~ 443 (507)
++.|++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999987543
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=3.7e-14 Score=131.10 Aligned_cols=262 Identities=10% Similarity=-0.015 Sum_probs=176.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CchhHHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPD----EIAMLAALSACAQLGAVELGEWIHNYIEQY----GLN-TIVPLNNA 250 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 250 (507)
.....+...|++++|...|+++.+... .+ ...+..+...+...|+++.|...++...+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 344555666666666666666655421 12 234555555666666666666666554432 111 12445566
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGL--------------------GREALDMFSR 301 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 301 (507)
+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66777777777777777766543 12 2366677777777777 7888877777
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhh
Q 010575 302 MERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRR 372 (507)
Q Consensus 302 m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (507)
.... +..| ...++..+...+...|++++|...+++..+.....++ ...+..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5432 1111 1246777778888899999999998887753211112 23677888889999999999999887
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCCchHHHHHHHH
Q 010575 373 M----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 373 ~----~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
. +..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|.+++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6 11122 4567788888999999999999999998765442 34788999999999999999999999
Q ss_pred HHhC
Q 010575 439 MRDM 442 (507)
Q Consensus 439 ~~~~ 442 (507)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8643
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=7.4e-14 Score=125.25 Aligned_cols=237 Identities=11% Similarity=-0.051 Sum_probs=137.8
Q ss_pred CCcHHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHH
Q 010575 90 STIELGREIHCQTVGTGLD---SDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARA 165 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~ 165 (507)
|++++|...++.+.+.... .+..++..+..++...|++++|...|+++....| +..+|..+...+...|++++|.+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4455555555555544211 1234455555555555555555555555555444 34555555555555555555555
Q ss_pred HHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 010575 166 LFELMTE---KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN 242 (507)
Q Consensus 166 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (507)
.|++..+ .+..++..+...|...|++++|.+.|+++.+.. |+.......+..+...|++++|...+....... +
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~ 175 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-D 175 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-C
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 5555543 245677777788888888888888888877643 444444444455566678888888887766654 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKNKS-------VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFI 315 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 315 (507)
++...+ .++..+...++.++|...+....+.+ ...|..+...|...|++++|...|++.... .|+. +.
T Consensus 176 ~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~ 250 (275)
T 1xnf_A 176 KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FV 250 (275)
T ss_dssp CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CH
T ss_pred cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HH
Confidence 333333 36666677777777777777766532 355666677777777777777777777664 2322 11
Q ss_pred HHHHHHhccCcHHHHHHHH
Q 010575 316 AILSACCHVGLVELGRRYF 334 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~ 334 (507)
....++...|++++|++.+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 2233445556666665554
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=2.2e-14 Score=136.53 Aligned_cols=299 Identities=11% Similarity=-0.015 Sum_probs=170.0
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHH
Q 010575 79 FPFVLKAVVKLSTIELGREIHCQTVGTGLDSD---VHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYA 155 (507)
Q Consensus 79 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~ 155 (507)
+......+...|++++|...++..++.++... ..++..+...|...|++++|...+++....
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 76 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL--------------- 76 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------
Confidence 34445555666666666666666666543211 234555556666666666666655543321
Q ss_pred hcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCC-CC----HHHHHHHHHHHhccCC---
Q 010575 156 KVGDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVK-PD----EIAMLAALSACAQLGA--- 225 (507)
Q Consensus 156 ~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~--- 225 (507)
...... ....++..+...|...|++++|...+++..+.... ++ ..++..+...+...|+
T Consensus 77 -----------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 145 (406)
T 3sf4_A 77 -----------ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFG 145 (406)
T ss_dssp -----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred -----------HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccc
Confidence 000100 01234555666666667777666666665442100 11 2244444445555555
Q ss_pred -----------------HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHH
Q 010575 226 -----------------VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--SVITWTTMIAGL 286 (507)
Q Consensus 226 -----------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~ 286 (507)
++.|...+....+. +.....+ ...++..+...+
T Consensus 146 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~ 197 (406)
T 3sf4_A 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTH 197 (406)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHH
Confidence 44444444333221 1111000 123455566666
Q ss_pred HHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHH
Q 010575 287 ALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLL 357 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 357 (507)
...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++ ..++..+...|
T Consensus 198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 277 (406)
T 3sf4_A 198 YLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 277 (406)
T ss_dssp HHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHH
Confidence 666677777666666543200 111 235666777777788888888877776643111111 45667777888
Q ss_pred hhcCCHHHHHHHHhhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCCchHHHHHHHH
Q 010575 358 GRAGYLQEAEKLLRRM----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEP------HNSGNYAILSNIY 423 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~ 423 (507)
...|++++|...++++ +..++ ..++..+...+...|++++|...+++++++.+ ....++..++.++
T Consensus 278 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 278 TLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 8888888888888776 11122 45677888889999999999999999977533 2355778888888
Q ss_pred HHcCCchH
Q 010575 424 AILGRWNE 431 (507)
Q Consensus 424 ~~~g~~~~ 431 (507)
...|+...
T Consensus 358 ~~~g~~~~ 365 (406)
T 3sf4_A 358 MVLGLSYS 365 (406)
T ss_dssp HHHHTTSC
T ss_pred HHhhHhHH
Confidence 88887643
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=2.2e-14 Score=139.09 Aligned_cols=208 Identities=9% Similarity=-0.075 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010575 227 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKI-GKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRM 302 (507)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 302 (507)
+.+...++...... +.+...+..+..+|...|++ ++|+..|++..+ .+...|..+...|...|++++|...|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 34556666677777777777 777777776653 34668888888999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc--------CCHHH
Q 010575 303 ERARVKPNEITFIAILSACCHV---------GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA--------GYLQE 365 (507)
Q Consensus 303 ~~~g~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 365 (507)
.+. .|+...+..+...+... |++++|+..|+++.+. .+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 876 57778888889999998 9999999999999874 244578889999999988 99999
Q ss_pred HHHHHhhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 366 AEKLLRRM-PFEA----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 366 A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
|...|+++ ...| +...|..+..+|...|++++|...|+++++++|+++.++..++.++...|++++|++.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999988 4345 78899999999999999999999999999999999999999999999999999999765443
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=8.7e-12 Score=124.15 Aligned_cols=403 Identities=9% Similarity=0.043 Sum_probs=273.2
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHhccCCC---CCcccHHHHHHHHHcCCC---chHHHHHHHHHHHcC-CCCCcccH
Q 010575 7 DQNNHLLSRFIDSCSSLGFSDYAYSIFTHKSK---PDVYLYNTTIKALCQTDN---PLNAVILYNKIQASA-LRPDNYSF 79 (507)
Q Consensus 7 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~~ 79 (507)
+.|...|..++..+.+.+.++.++.+|+.+.. .....|...+..-.+.++ ++.+..+|++..... ..|+...|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46788999999999999999999999998764 455678888888888888 999999999998743 13777777
Q ss_pred HHHHHHHHccCCc--------HHHHHHHHHHHHc-CC-CCc-HHHHHHHHHHHHh---------cCChHHHHHHHHhccc
Q 010575 80 PFVLKAVVKLSTI--------ELGREIHCQTVGT-GL-DSD-VHVVAALIQMYAS---------CKCIYDARKVFDELSL 139 (507)
Q Consensus 80 ~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 139 (507)
..-+....+.++. +.+.++|+..+.. |. .++ ...|...+..... .++++.+.++|+++..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7666655554443 3345777776653 55 443 4677777765442 3457788999999886
Q ss_pred CCC--C-hhhHH---HHHHHH----------HhcCCHHHHHHHHHhcC-------C--------------C--C------
Q 010575 140 RVW--N-VAVWN---TMVAGY----------AKVGDLNNARALFELMT-------E--------------K--N------ 174 (507)
Q Consensus 140 ~~p--~-~~~~~---~li~~~----------~~~~~~~~A~~~~~~~~-------~--------------~--~------ 174 (507)
. | + ..+|. .+...+ -...+++.|...+..+. . | +
T Consensus 223 i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 223 Q-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp S-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred C-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 4 4 1 12332 221111 00122333444443311 0 0 0
Q ss_pred hhHHHHHHHHHHhCC-------ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHH-HHHHHHHHcCCCCchh
Q 010575 175 VISWTTLIAGYAQMD-------QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGE-WIHNYIEQYGLNTIVP 246 (507)
Q Consensus 175 ~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 246 (507)
...|...+.---..+ ..+.+..+|++++.. ++-+...|...+.-+.+.|+.+.|. .+++...... +.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHH
Confidence 123555544333322 123456678887765 3446677777777778888888886 9999888653 55666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKN-------------KS------------VITWTTMIAGLALHGLGREALDMFSR 301 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (507)
.+-.++....+.|+++.|..+|+.+.+ |+ ...|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777788888899999999999988764 21 23677778888888999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC--
Q 010575 302 MERARVKPNEITFIAILSACCH-VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-- 377 (507)
Q Consensus 302 m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-- 377 (507)
..+.-..+....|...+..-.+ .++++.|..+|+...+.+ +-+...|...++.....|+.+.|..+|+++ ...|
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 8875111223344333332223 355899999999998853 445667778888888899999999999987 3233
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 378 --NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 378 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
....|...+..-...|+.+.+..+.+++.+..|+++.
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 3457888888888899999999999999999998653
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=2.4e-13 Score=129.73 Aligned_cols=134 Identities=11% Similarity=-0.062 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC----Chh
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP----KIE 348 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~ 348 (507)
++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++++.....-.. ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666666666666666666544210 011 13566677777777888888877777665311111 145
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC-C---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM-P---FEA----NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
++..+...|...|++++|...++++ . ..+ ...++..+...|...|++++|...+++++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6677778888888888888888766 1 111 2346777888889999999999999999887655
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=7.3e-13 Score=125.08 Aligned_cols=226 Identities=8% Similarity=-0.014 Sum_probs=109.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHhHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC------CCchhHHH
Q 010575 181 LIAGYAQMDQPNEAITLFRRMQVE----NVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGL------NTIVPLNN 249 (507)
Q Consensus 181 li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 249 (507)
....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+.+..+.-. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777766543 1111 123455555666666666666666665554210 01123445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKN-----KSV----ITWTTMIAGLALHGLGREALDMFSRMERA----RV-KPNEITFI 315 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~-~p~~~~~~ 315 (507)
.+..+|...|++++|...|++..+ ++. .++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555556666666666655554432 111 24555555566666666666666555441 11 11234455
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhC---CCCChhHHHHHHHHHhhcCC---HHHHHHHHhhCCCCCC-HHHHHHHHHH
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYG---IEPKIEQYGCMIDLLGRAGY---LQEAEKLLRRMPFEAN-AAIWGSLLAA 388 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 388 (507)
.+...+...|++++|...+++...... .+.....+..+...|...|+ +++|..++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 555556666666666666655543210 11111223344444555555 4555555554432221 1233334444
Q ss_pred HHHcCCHHHHHHHHHHHh
Q 010575 389 SNIYGDVELGECALQHLI 406 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~ 406 (507)
|...|++++|...+++++
T Consensus 349 y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 444444444444444443
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=6.1e-13 Score=122.82 Aligned_cols=277 Identities=10% Similarity=-0.028 Sum_probs=145.1
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhc
Q 010575 81 FVLKAVVKLSTIELGREIHCQTVGTGLDSD---VHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKV 157 (507)
Q Consensus 81 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~ 157 (507)
.....+...|++++|...++++.+..+... ..++..+...|...|++++|...+++....
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------- 72 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL----------------- 72 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------
Confidence 334445566666666666666666533211 234555555666666666666655544321
Q ss_pred CCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCC-CCC----HHHHHHHHHHHhccCC-----
Q 010575 158 GDLNNARALFELMTE--KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENV-KPD----EIAMLAALSACAQLGA----- 225 (507)
Q Consensus 158 ~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~----- 225 (507)
...... ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 73 ---------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (338)
T 3ro2_A 73 ---------ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP 143 (338)
T ss_dssp ---------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred ---------hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccc
Confidence 000000 0123455566666666777777666666543210 011 2244444555555555
Q ss_pred ---------------HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHH
Q 010575 226 ---------------VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--SVITWTTMIAGLAL 288 (507)
Q Consensus 226 ---------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~ 288 (507)
++.|...++...+. +.....+ ....+..+...+..
T Consensus 144 ~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 144 GPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp SCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHH
Confidence 44444444433221 0000000 11234445555555
Q ss_pred cCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhh
Q 010575 289 HGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGR 359 (507)
Q Consensus 289 ~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 359 (507)
.|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-..+ ..++..+...|..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 5666666665555443100 011 125556666666777777777777666542111111 4456667777777
Q ss_pred cCCHHHHHHHHhhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 360 AGYLQEAEKLLRRM----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 360 ~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.|++++|...++++ +..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 77777777777765 11111 346677788888889999999999888877654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=3.8e-13 Score=127.05 Aligned_cols=225 Identities=8% Similarity=-0.071 Sum_probs=175.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hhHHH
Q 010575 216 ALSACAQLGAVELGEWIHNYIEQY----GLNT-IVPLNNALIDMYAKSGKIGKALQVFENMKN-----KS-----VITWT 280 (507)
Q Consensus 216 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~ 280 (507)
....+...|++++|...++...+. +.++ ...++..+..+|...|+++.|...+.+..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556678899999999999999864 2112 346788899999999999999999887653 12 25788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CC-CCChhHHH
Q 010575 281 TMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRY---GI-EPKIEQYG 351 (507)
Q Consensus 281 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 351 (507)
.+...|...|++++|+..|++..+... .++ ..++..+..+|...|++++|+..+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999775311 112 2478888999999999999999999987621 22 23356788
Q ss_pred HHHHHHhhcCCHHHHHHHHhhC-C---C--CC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 352 CMIDLLGRAGYLQEAEKLLRRM-P---F--EA-NAAIWGSLLAASNIYGD---VELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~-~---~--~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
.+...|.+.|++++|...+++. . . .| ....+..+...+...|+ .++|..++++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999887 1 1 12 12235667778888898 88888888877 333444668889999
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010575 422 IYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~~ 441 (507)
+|.+.|++++|.+++++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999863
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.51 E-value=8.1e-13 Score=110.64 Aligned_cols=167 Identities=10% Similarity=0.044 Sum_probs=138.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010575 244 IVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 320 (507)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 320 (507)
+..+|..+...|...|++++|+..|++..+ .+..+|..+...|...|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456777888888888888888888887764 356788888888999999999999999887753 3356677777888
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A 398 (507)
+...++++.+...+.+.... .+.+...+..+...|.+.|++++|++.|+++ ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999998863 3446778888999999999999999999987 3344 677899999999999999999
Q ss_pred HHHHHHHhccCCCCC
Q 010575 399 ECALQHLIKLEPHNS 413 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~ 413 (507)
+..|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.8e-11 Score=111.56 Aligned_cols=219 Identities=11% Similarity=0.051 Sum_probs=146.3
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHh-------ccCCH-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010575 192 NEAITLFRRMQVENVKPDEIAMLAALSACA-------QLGAV-------ELGEWIHNYIEQYGLNTIVPLNNALIDMYAK 257 (507)
Q Consensus 192 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 257 (507)
++|..+|++.+... +.+...|..++..+. +.|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777766642 334455555555443 24654 7777777777763223445567777777777
Q ss_pred cCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 010575 258 SGKIGKALQVFENMKN--K-SVI-TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC-CHVGLVELGRR 332 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~ 332 (507)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7888888877777665 2 233 67777777778888888888888877753 22334444333322 23588888888
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 333 YFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P---FEA--NAAIWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
+|++..+.. +.+...|..++..+.+.|++++|..+|+++ . ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887642 335677777888888888888888888877 2 243 35677777777778888888888888888
Q ss_pred ccCCCCCc
Q 010575 407 KLEPHNSG 414 (507)
Q Consensus 407 ~~~p~~~~ 414 (507)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88887553
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.49 E-value=9e-13 Score=114.61 Aligned_cols=186 Identities=11% Similarity=-0.055 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN----KSVITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILS 319 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~ 319 (507)
+..+......+...|++++|...|+...+ ++...+..+..++...|++++|+..|++..+. .| +...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34445555555555555555555554432 33444444555555555555555555555543 22 2344455555
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCCh-------hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHH
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKI-------EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---AAIWGSLLAA 388 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~ 388 (507)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|.+.|+++ ...|+ ...|..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 5555555555555555555421 1122 23444444455555555555555544 33333 2334444444
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+... +...++++..+.+.+...+... .....+.+++|+..+++..+
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 4322 2233444444444432222222 22333445999999998874
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=4.7e-10 Score=111.76 Aligned_cols=179 Identities=8% Similarity=0.001 Sum_probs=118.1
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 010575 263 KALQVFENMKN---KSVITWTTMIAGLALHGLGREAL-DMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 263 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~-~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
.+..+|++... .+...|...+..+...|+.++|. .+|++.... ++.+...+...+......|+++.|..+|+.+.
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455665543 35567777777777778877786 888887764 33455556666667777788888888888777
Q ss_pred Hhh---------CCCCC------------hhHHHHHHHHHhhcCCHHHHHHHHhhC-CC--CCCHHHHHHHHHHHHHc-C
Q 010575 339 SRY---------GIEPK------------IEQYGCMIDLLGRAGYLQEAEKLLRRM-PF--EANAAIWGSLLAASNIY-G 393 (507)
Q Consensus 339 ~~~---------~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~~l~~~~~~~-g 393 (507)
... .. |+ ..+|...+....+.|..+.|..+|.++ .. .+....|...+..-.+. +
T Consensus 406 ~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 531 01 21 235777777777778888888888777 21 12233443333333333 4
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
+.+.|..+|+.+++..|+++..+...++.....|+.+.|..+|++.....
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 47888888888888888877777777877777888888888888776443
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=7.3e-13 Score=133.45 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 010575 276 VITWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMI 354 (507)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 354 (507)
..+|+.|...|.+.|++++|+..|++.++. .| +..++..+..++.+.|++++|+..|+++.+. -+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 457888888899999999999999988875 34 5678888999999999999999999998864 233578889999
Q ss_pred HHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHH
Q 010575 355 DLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNES 432 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 432 (507)
.+|...|++++|++.|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999987 4445 6778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 010575 433 GKIRKVMR 440 (507)
Q Consensus 433 ~~~~~~~~ 440 (507)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=126.10 Aligned_cols=241 Identities=11% Similarity=0.038 Sum_probs=118.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHhHC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC
Q 010575 175 VISWTTLIAGYAQMDQPNEAITLFRRMQVE-------NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------GL 241 (507)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 241 (507)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++.+.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 356777888888888888888888887762 22233455666677777777777777777766643 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 010575 242 -NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----------SVITWTTMIAGLALHGLGREALDMFSRMERA---- 305 (507)
Q Consensus 242 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---- 305 (507)
+....++..+...|...|++++|...|++..+. ....+..+...+...|++++|+..++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 222344555555566666666665555544320 1123444444444444444444444444332
Q ss_pred --CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh------CCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCC
Q 010575 306 --RVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRY------GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFE 376 (507)
Q Consensus 306 --g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (507)
+..|+ ..++..+...+...|++++|...++++.+.. ...+.......
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------ 242 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------ 242 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH------------------------
Confidence 11111 1233344444444444444444444444310 00000000000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 377 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
....+..+...+...+.+.++...++.+....|....++..++.+|.+.|++++|.+++++..
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 243 -HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp -HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 011112222233344555556666666666667667777777777777777777777777764
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=7.2e-11 Score=110.90 Aligned_cols=261 Identities=14% Similarity=0.031 Sum_probs=171.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-Cc----hhHHHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENVKPDEI----AMLAALSACAQLGAVELGEWIHNYIEQYGLN-TI----VPLNNA 250 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 250 (507)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+.+....... .+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566777777777777766643222221 3445555666777777777777766543111 11 223455
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN-------K----SVITWTTMIAGLALHGLGREALDMFSRMERARVK--P--NEITFI 315 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~ 315 (507)
+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 67777788888888877776543 1 1235566777888889999998888887653211 1 235667
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHH-----HHHHHHhhcCCHHHHHHHHhhC-CCCCC-----HHHHHH
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYG-----CMIDLLGRAGYLQEAEKLLRRM-PFEAN-----AAIWGS 384 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~ 384 (507)
.+...+...|++++|...+++.............+. ..+..+...|++++|...+++. ...|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 777888888999999999888865321111111222 2334477889999999999887 22221 235667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHN------SGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+...+...|++++|...++++++..+.. ..++..++.++...|+.++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7788888999999999999886654321 1366778888999999999999888875
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.46 E-value=3.5e-12 Score=106.59 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
.|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34445555666666666666666555432 224555666666666667777777777666653 233456666667777
Q ss_pred hhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHH
Q 010575 358 GRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 435 (507)
...|++++|.+.++++ . ...+...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|.++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777665 1 2235667777778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHh
Q 010575 436 RKVMRD 441 (507)
Q Consensus 436 ~~~~~~ 441 (507)
+++..+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888754
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=2.5e-12 Score=124.64 Aligned_cols=178 Identities=11% Similarity=-0.017 Sum_probs=156.1
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 010575 261 IGKALQVFENMKN---KSVITWTTMIAGLALHGLG-REALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNI 336 (507)
Q Consensus 261 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 336 (507)
++++...++.... .+...|..+...+...|++ ++|+..|++..+.. +.+...+..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666665543 3667899999999999999 99999999998863 33578999999999999999999999999
Q ss_pred hHHhhCCCCChhHHHHHHHHHhhc---------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc--------CCHHH
Q 010575 337 MKSRYGIEPKIEQYGCMIDLLGRA---------GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY--------GDVEL 397 (507)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~--------g~~~~ 397 (507)
+.+ ..|+...+..+...|... |++++|...|+++ ...| +...|..+..+|... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 984 468888999999999999 9999999999988 3334 678899999999998 99999
Q ss_pred HHHHHHHHhccCC---CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 398 GECALQHLIKLEP---HNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 398 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|+..|+++++++| +++.+|..++.+|...|++++|++.+++..+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999 89999999999999999999999999998754
No 77
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=3.8e-11 Score=109.47 Aligned_cols=213 Identities=8% Similarity=-0.010 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCH-------HHHHHHHHhcCC---C-ChhHHHHHHHHHHH
Q 010575 227 ELGEWIHNYIEQYGLNTIVPLNNALIDMYAK-------SGKI-------GKALQVFENMKN---K-SVITWTTMIAGLAL 288 (507)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 288 (507)
+.|..+|++++... +.+...|..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888888764 5667788888877763 5875 899999998765 2 45689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh-hcCCHHH
Q 010575 289 HGLGREALDMFSRMERARVKPN-EI-TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG-RAGYLQE 365 (507)
Q Consensus 289 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 365 (507)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 454 33 7888999999999999999999999863 2344555554443322 3699999
Q ss_pred HHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 366 AEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKL---EPH-NSGNYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 366 A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
|..+|+++ ... .+...|..++..+...|++++|..+|+++++. .|+ +..+|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 222 36788999999999999999999999999985 553 5678999999999999999999999998
Q ss_pred HhCCC
Q 010575 440 RDMGV 444 (507)
Q Consensus 440 ~~~~~ 444 (507)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 75544
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=5e-11 Score=112.18 Aligned_cols=225 Identities=11% Similarity=0.029 Sum_probs=109.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----C-CchhHH
Q 010575 180 TLIAGYAQMDQPNEAITLFRRMQVENV-KPD----EIAMLAALSACAQLGAVELGEWIHNYIEQYGL-----N-TIVPLN 248 (507)
Q Consensus 180 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 248 (507)
.....+...|++++|...|++..+... .++ ..++..+...+...|+++.|...+.+..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777777777777654311 112 23455556666666666666666665554210 0 113344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 010575 249 NALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMER-----ARVKPNEITF 314 (507)
Q Consensus 249 ~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~ 314 (507)
+.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 4555555666666666555554432 11 12444555555555666666665555544 21 1123445
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCC---CCChhHHHHHHHHHhhcCC---HHHHHHHHhhCCCCCCH-HHHHHHHH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGI---EPKIEQYGCMIDLLGRAGY---LQEAEKLLRRMPFEANA-AIWGSLLA 387 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~l~~ 387 (507)
..+...+.+.|++++|...+++..+...- +.....+..+...|...|+ +.+|+..+++.+..|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555555566666666665555543111 1112223334444444444 55555555544222211 12333444
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 010575 388 ASNIYGDVELGECALQHL 405 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~ 405 (507)
.|...|++++|...++++
T Consensus 345 ~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 444444444444444444
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=5.5e-12 Score=118.78 Aligned_cols=225 Identities=8% Similarity=-0.080 Sum_probs=171.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCC--C---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----hhHH
Q 010575 215 AALSACAQLGAVELGEWIHNYIEQYGL--N---TIVPLNNALIDMYAKSGKIGKALQVFENMKN-----KS-----VITW 279 (507)
Q Consensus 215 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~ 279 (507)
.....+...|+++.|...+++..+... . ....++..+..+|...|+++.|...+.+..+ ++ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344456789999999999999886421 1 1245778899999999999999988887653 12 3478
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCCChhHHH
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERA----RVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEPKIEQYG 351 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ 351 (507)
+.+...|...|++++|+..|++..+. +..+ ...++..+..+|...|++++|+..+++..... +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88999999999999999999987752 1111 12467788889999999999999999988621 2222367788
Q ss_pred HHHHHHhhcCCHHHHHHHHhhC----CC--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 352 CMIDLLGRAGYLQEAEKLLRRM----PF--EAN-AAIWGSLLAASNIYGD---VELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
.+...|.+.|++++|...+++. +. .|. ...+..+...+...|+ +.+|+..+++. ...|.....+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Confidence 8999999999999999999886 11 222 3345556666777788 88888888773 223344567889999
Q ss_pred HHHHcCCchHHHHHHHHHH
Q 010575 422 IYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~ 440 (507)
+|.+.|++++|.+++++..
T Consensus 345 ~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999875
No 80
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=5e-13 Score=122.09 Aligned_cols=247 Identities=11% Similarity=0.035 Sum_probs=169.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChhHHHHHHHHHHhCCChhHHHHHHHHHhHC------C
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTE--------K---NVISWTTLIAGYAQMDQPNEAITLFRRMQVE------N 205 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 205 (507)
+..++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 567788999999999999999999998865 2 2356888999999999999999999998764 2
Q ss_pred -CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---
Q 010575 206 -VKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------GL-NTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--- 274 (507)
Q Consensus 206 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 274 (507)
.+.....+..+...+...|++++|...++++.+. +. +.....+..+...|...|++++|...|+.+.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1234567788889999999999999999998865 22 234567788899999999999999999887542
Q ss_pred -----C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC
Q 010575 275 -----S---VITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK 346 (507)
Q Consensus 275 -----~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 346 (507)
+ ..++..+...|...|++++|...++++.+.. |+. .+..+- ........ .
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~~----------------~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIWM----------------H 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHHH----------------H
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHHH----------------H
Confidence 2 3478888999999999999999999988741 110 000000 00000000 1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRMP-FEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
...+..+...+...+.+.+|...++... ..| +..++..+..+|...|++++|..++++++++.|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122223333444555666666666652 223 4456788888888999999999999998887664
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.41 E-value=1.6e-11 Score=106.60 Aligned_cols=205 Identities=11% Similarity=0.001 Sum_probs=161.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHH
Q 010575 208 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK---SVITWTTMIA 284 (507)
Q Consensus 208 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~ 284 (507)
.|+..+......+...|++++|...++...+...+++...+..+..+|...|++++|...|+...+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567888888999999999999999999999875477777777999999999999999999988753 4568889999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHH
Q 010575 285 GLALHGLGREALDMFSRMERARVKPNE-------ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK---IEQYGCMI 354 (507)
Q Consensus 285 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 354 (507)
.|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999998853 2244 4577788888999999999999999984 3554 56778888
Q ss_pred HHHhhcCCH--HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 355 DLLGRAGYL--QEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 355 ~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
.+|...|+. ++|..+ . ..+...+.... ....+.+++|...++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 888766643 232221 1 22344444433 34567799999999999999999988877776553
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=3.3e-11 Score=100.61 Aligned_cols=168 Identities=11% Similarity=-0.006 Sum_probs=143.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778888899999999999998876 356788889999999999999999999988763 34677888899999
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~ 399 (507)
...|++++|...++++... .+.+...+..+...+...|++++|...++++ . ...+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999874 3456788889999999999999999999987 2 2346788999999999999999999
Q ss_pred HHHHHHhccCCCCCch
Q 010575 400 CALQHLIKLEPHNSGN 415 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~ 415 (507)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998886543
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.33 E-value=8.2e-11 Score=106.27 Aligned_cols=187 Identities=11% Similarity=-0.011 Sum_probs=127.0
Q ss_pred HHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 010575 254 MYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERA----RVKP-NEITFIAILS 319 (507)
Q Consensus 254 ~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~ 319 (507)
.|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+..+++..+. |-.+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666655432 11 346777777888888888888888776642 1111 1346778888
Q ss_pred HHhcc-CcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC---CH-----HHHHHH
Q 010575 320 ACCHV-GLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA---NA-----AIWGSL 385 (507)
Q Consensus 320 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~-----~~~~~l 385 (507)
.|... |++++|+..|++..+...-..+ ..++..+...+.+.|++++|...|+++ ...| .. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999988764211111 356788899999999999999999987 2222 21 256778
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--HcCCchHHHHHHHHHH
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGN-----YAILSNIYA--ILGRWNESGKIRKVMR 440 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~ 440 (507)
..++...|++++|+..++++++++|+.... +..++.++. ..+++++|++.|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888999999999999999999999986553 345566664 4567888888886553
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1.9e-09 Score=101.09 Aligned_cols=162 Identities=10% Similarity=-0.026 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhHCCCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCch-hHHH--
Q 010575 177 SWTTLIAGYAQMDQPNEAITLFRRMQVENVK----PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIV-PLNN-- 249 (507)
Q Consensus 177 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-- 249 (507)
++..+...+...|++++|...+++....... ....++..+...+...|++++|...++........++. ..+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3445556666666666666666665542211 11234555555666666666666666665543111110 1111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHH
Q 010575 250 ---ALIDMYAKSGKIGKALQVFENMKNKSV-------ITWTTMIAGLALHGLGREALDMFSRMERA----RVKPNE-ITF 314 (507)
Q Consensus 250 ---~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~~-~~~ 314 (507)
..+..+...|++++|...++.....+. ..+..+...+...|++++|...+++.... |..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 122335556666666666665544211 12334445555555555555555554321 111111 133
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMK 338 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~ 338 (507)
..+..++...|+.++|...+++..
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 333444444555555555554443
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=2.9e-10 Score=100.84 Aligned_cols=207 Identities=8% Similarity=-0.010 Sum_probs=133.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHH
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFENMKN--K-S---VITWTTMIAGLALHGLGREALDMFSRMERARV-KPN-EITF 314 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~ 314 (507)
.+...+..+...+.+.|++++|...|+.+.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3445555666667777777777777777654 2 2 34566667777777777777777777766421 112 3445
Q ss_pred HHHHHHHhc--------cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 010575 315 IAILSACCH--------VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLL 386 (507)
Q Consensus 315 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 386 (507)
..+..++.. .|++++|+..|+++.+.+ +.+......+.......+.+ ...+..+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 556666666 677777777777776542 11222222211111110000 11246678
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCccCCceeEE
Q 010575 387 AASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAIL----------GRWNESGKIRKVMRDMGVKKMPGCSYI 453 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (507)
..|...|++++|+..++++++..|+++ .++..++.+|... |++++|+..++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 889999999999999999999999854 4788999999877 899999999999974332
Q ss_pred EECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhc
Q 010575 454 EVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFA 489 (507)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 489 (507)
.+|...+....+.++...+++.
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHh
Confidence 2444456677777777766554
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.27 E-value=1.7e-10 Score=104.12 Aligned_cols=223 Identities=12% Similarity=-0.038 Sum_probs=132.1
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 010575 160 LNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE----NVKPD-EIAMLAALSACAQLGAVELGEWIHN 234 (507)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 234 (507)
+++|...|++. ...|...|++++|...|++.... |-.++ ..+|..+..+|...|++++|...++
T Consensus 33 ~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666655543 55666677777777776665442 11111 2344555555555555555555554
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC--
Q 010575 235 YIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALH-GLGREALDMFSRMERARVK-PN-- 310 (507)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~-p~-- 310 (507)
...+. +...|+...+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 102 ~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 102 NAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 44321 1111222111 23566677777775 8888888888877653110 01
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh-----hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHH--
Q 010575 311 --EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI-----EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAA-- 380 (507)
Q Consensus 311 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-- 380 (507)
..++..+...+...|++++|+..|+++.+...-.+.. ..|..+..++...|++++|...|++. ...|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 3457778888888888999988888887642111221 14667777888889999999988887 4444321
Q ss_pred ----HHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 010575 381 ----IWGSLLAASN--IYGDVELGECALQHLIKLEPHNSGNYAIL 419 (507)
Q Consensus 381 ----~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 419 (507)
.+..++.++. ..+++++|+..|+++..++|.....+..+
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 2344555554 45678888888888888888754444333
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=9.4e-11 Score=105.12 Aligned_cols=154 Identities=11% Similarity=0.036 Sum_probs=83.8
Q ss_pred HhCCChhHHHHHHHHHhHC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CC-CCchhHHHHH
Q 010575 186 AQMDQPNEAITLFRRMQVE-------NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------GL-NTIVPLNNAL 251 (507)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 251 (507)
...|++++|...|++.++. ..+....++..+...+...|++++|...++.+.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666655441 11223445666667777777777777777766643 11 2234456666
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHH
Q 010575 252 IDMYAKSGKIGKALQVFENMKNK-----------SVITWTTMIAGLALHGLGREALDMFSRMERA------RVKP-NEIT 313 (507)
Q Consensus 252 ~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~ 313 (507)
..+|...|++++|...|.+..+. ...++..+...|...|++++|...++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 66777777777776666554321 1234555555555666666666666555442 1111 1234
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 314 FIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
+..+...+...|++++|...++++.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555543
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.26 E-value=4.9e-11 Score=120.25 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=128.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010575 244 IVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA 320 (507)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 320 (507)
+...++.|..+|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..|++.++.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 356677778888888888888888877654 356778888888888888888888888888752 2246788888888
Q ss_pred HhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 010575 321 CCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 321 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A 398 (507)
+...|++++|++.|+++.+. -+-+...|..+..+|.+.|++++|++.|+++ ...| +...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 88888899998888888863 2335678888888888899999999888887 4445 566888888888999999999
Q ss_pred HHHHHHHhccCC
Q 010575 399 ECALQHLIKLEP 410 (507)
Q Consensus 399 ~~~~~~~~~~~p 410 (507)
.+.+++++++.|
T Consensus 165 ~~~~~kal~l~~ 176 (723)
T 4gyw_A 165 DERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCh
Confidence 888888876543
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.25 E-value=1.2e-11 Score=99.37 Aligned_cols=121 Identities=10% Similarity=-0.069 Sum_probs=81.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYG 393 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g 393 (507)
|...+...|++++|+..++.... ..| +...+..+...|.+.|++++|.+.|+++ ...| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33445566777777777776653 233 2344556777777777777777777776 3334 5667777777777788
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHH-HHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKI-RKVMR 440 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 440 (507)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 888888888888888887777788888788888877766554 45554
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=1.6e-09 Score=95.91 Aligned_cols=238 Identities=10% Similarity=0.006 Sum_probs=109.4
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh-hHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010575 154 YAKVGDLNNARALFELMTEKNV-ISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWI 232 (507)
Q Consensus 154 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 232 (507)
..-.|++..++.-..++...+. ..-..+.++|...|+++.. ..-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 3346677776665555443222 2223344666666666531 11223332333332222 211 4444
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 010575 233 HNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK-----SVITWTTMIAGLALHGLGREALDMFSRMERARV 307 (507)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 307 (507)
+++....+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 54444433 233333345555555566666666665554321 2334455555556666666666666655543
Q ss_pred CC-----CHHHHHHHHHHH--hccC--cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC--
Q 010575 308 KP-----NEITFIAILSAC--CHVG--LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-- 375 (507)
Q Consensus 308 ~p-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 375 (507)
.| +..+...++.++ ...| ++..|..+|+++... .|+..+-..+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 34 233444444332 2222 555556666555432 233222222333555555555555555443 11
Q ss_pred --------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 376 --------EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 376 --------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.| ++.+...++......|+ +|.++++++.+..|+++
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 12 33344344444444444 55555555555555544
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.23 E-value=2.2e-10 Score=101.72 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=145.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhH
Q 010575 208 PDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI---VPLNNALIDMYAKSGKIGKALQVFENMKN--K-S---VIT 278 (507)
Q Consensus 208 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~ 278 (507)
.+...+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677778888999999999999999999875 223 56778899999999999999999999875 2 1 346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhH
Q 010575 279 WTTMIAGLAL--------HGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQ 349 (507)
Q Consensus 279 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 349 (507)
+..+..++.. .|++++|+..|++..+. .|+. .....+ ..+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999885 3432 222111 111111111 1122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-CCCC----CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCCc
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA----NAAIWGSLLAASNIY----------GDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
+..+...|.+.|++++|...|+++ ...| ....+..+..+|... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456777888889999998888877 2223 245677777777765 8999999999999999999864
Q ss_pred ---hHHHHHHHHHHcCCchH
Q 010575 415 ---NYAILSNIYAILGRWNE 431 (507)
Q Consensus 415 ---~~~~l~~~~~~~g~~~~ 431 (507)
+...+..++.+.|++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34445555555554443
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=2.6e-09 Score=94.53 Aligned_cols=159 Identities=7% Similarity=-0.068 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC-----ChhHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP-----KIEQYG 351 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~ 351 (507)
++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+++.|.+.++.|.+. .| +..+..
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHH
Confidence 33344444555555555555555544432211 2234444445555555555555555555432 33 122333
Q ss_pred HHHHH--HhhcC--CHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----------CCCCCchH
Q 010575 352 CMIDL--LGRAG--YLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKL----------EPHNSGNY 416 (507)
Q Consensus 352 ~l~~~--~~~~g--~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~ 416 (507)
.|+.+ ....| ++.+|..+|+++ ...|+..+...++.++.+.|++++|++.++.+.+. +|+++.++
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 33333 11122 455555555554 22233222222233445555555555555544443 24455555
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 417 AILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 417 ~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..++.+....|+ +|.++++++.+
T Consensus 259 aN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 259 ANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHhCh--HHHHHHHHHHH
Confidence 444444444444 44555555543
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.22 E-value=7.9e-10 Score=95.57 Aligned_cols=182 Identities=13% Similarity=0.022 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-HHHHHH
Q 010575 246 PLNNALIDMYAKSGKIGKALQVFENMKN--KS----VITWTTMIAGLALHGLGREALDMFSRMERARVK-PNE-ITFIAI 317 (507)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~-~~~~~l 317 (507)
..+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|+++.+.... +.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444566677777888888888877664 22 235666777788888888888888887764221 111 234444
Q ss_pred HHHHhc------------------cCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCC
Q 010575 318 LSACCH------------------VGLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEAN 378 (507)
Q Consensus 318 ~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 378 (507)
..++.. .|++++|+..|+++.+. .|+ ...+........ .....
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~----------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL----------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH-----------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH-----------
Confidence 444433 35666666666666642 222 222211111000 00000
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 379 AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS---GNYAILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|++.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456678899999999999999999999976 57899999999999999999999999866654
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=4.1e-10 Score=88.27 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=76.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHH
Q 010575 314 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNI 391 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~ 391 (507)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++ . ...+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444455555555555555555442 1223444555555555555555555555554 1 12244556666666777
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 392 YGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.|++++|...++++++..|+++..+..++.++.+.|++++|.+.++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 77777777777777777777677777777777777777777777777654
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.20 E-value=1.3e-11 Score=99.15 Aligned_cols=143 Identities=9% Similarity=-0.013 Sum_probs=110.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 010575 282 MIAGLALHGLGREALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA 360 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (507)
|...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|++.|+++.+. .+-+...|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 344455667788888888876653 333 345566778888889999999998888864 234677888888899999
Q ss_pred CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 361 GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECA-LQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
|++++|...|+++ ...| +...|..+...|...|++++|... ++++++++|+++.+|.....++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999998887 4445 577889999999999998776655 699999999999999999999888875
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.17 E-value=3.7e-10 Score=114.36 Aligned_cols=169 Identities=11% Similarity=-0.060 Sum_probs=118.6
Q ss_pred HhcCCHHHHHHHHHhcC--------C---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010575 256 AKSGKIGKALQVFENMK--------N---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 324 (507)
Q Consensus 256 ~~~~~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 324 (507)
...|++++|++.|++.. + .+...+..+...+...|++++|+..|+++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56677777777777765 2 345667777777777888888888887777642 22556777777777777
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
|++++|+..|+++.+. .+.+...|..+..+|.+.|++++ .+.|+++ ...| +...|..+..++...|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888877753 13345667777777778888877 7777776 3333 5567777777788888888888888
Q ss_pred HHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 403 QHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 403 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
+++++++|++..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888877777777777766554
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=2.5e-09 Score=95.73 Aligned_cols=130 Identities=11% Similarity=0.041 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHhHC------CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------C-
Q 010575 175 VISWTTLIAGYAQMDQPNEAITLFRRMQVE------NV-KPDEIAMLAALSACAQLGAVELGEWIHNYIEQY------G- 240 (507)
Q Consensus 175 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 240 (507)
..++..+...|...|++++|...+++..+. +- +....++..+...+...|++++|...+.++.+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456777777888888888888888777653 11 223456777888888888888888888877764 1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------C---hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNK--------S---VITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
.+....++..+...|...|++++|...|++..+. + ..++..+...|...|++++|...+++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1334667888899999999999999999877542 2 35788899999999999999999999875
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=5e-09 Score=89.49 Aligned_cols=172 Identities=8% Similarity=-0.138 Sum_probs=139.1
Q ss_pred HHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 010575 264 ALQVFENMKN-KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG----LVELGRRYFNIMK 338 (507)
Q Consensus 264 A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 338 (507)
|.+.|+...+ .++.++..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4445544433 466778888888888899999999999988865 56777778888877 6 8999999999987
Q ss_pred HhhCCCCChhHHHHHHHHHhh----cCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Q 010575 339 SRYGIEPKIEQYGCMIDLLGR----AGYLQEAEKLLRRM-PFEAN---AAIWGSLLAASNI----YGDVELGECALQHLI 406 (507)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 406 (507)
+. -++..+..|...|.. .+++++|..+|++. ...|. +..+..|...|.. .+++++|...|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 63 367778888888877 88999999999988 43443 7888889999988 889999999999998
Q ss_pred ccCCCCCchHHHHHHHHHHc-C-----CchHHHHHHHHHHhCCC
Q 010575 407 KLEPHNSGNYAILSNIYAIL-G-----RWNESGKIRKVMRDMGV 444 (507)
Q Consensus 407 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 444 (507)
+. |.++.++..|+.+|... | ++++|++++++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66688999999999875 3 89999999999876664
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.14 E-value=1.3e-09 Score=97.94 Aligned_cols=176 Identities=10% Similarity=-0.017 Sum_probs=140.1
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 261 IGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 261 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
.+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3344445555554555677778888899999999999999988763 236678888999999999999999999998754
Q ss_pred hCCCCChhHHHH-HHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--Cch
Q 010575 341 YGIEPKIEQYGC-MIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN--SGN 415 (507)
Q Consensus 341 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 415 (507)
.|+...... ....+...++.++|...+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455443332 233466778888888888877 3334 67889999999999999999999999999999997 889
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 416 YAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+..++.++...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999988764
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=2.1e-09 Score=84.11 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677788888888888888888887753 335677778888888889999999999888764 244567788888888
Q ss_pred hhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 358 GRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
...|++++|.+.++++ .. ..+...+..++..+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999998877 22 335778888888999999999999999999888886
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.11 E-value=2.5e-09 Score=91.06 Aligned_cols=128 Identities=9% Similarity=-0.047 Sum_probs=100.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR 359 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (507)
..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|+..|+++.+. -+.+...+..+...|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 348888999999999999999998863 336788899999999999999999999999874 24457888888888876
Q ss_pred cCC--HHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 360 AGY--LQEAEKLLRRMPFEANA--AIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 360 ~g~--~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.|+ .+.+...++... .|++ ..+.....++...|++++|+..|++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654 455667777763 3443 34555666778899999999999999999998
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.11 E-value=2.1e-09 Score=97.79 Aligned_cols=218 Identities=11% Similarity=-0.021 Sum_probs=148.9
Q ss_pred CCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 010575 188 MDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ-LGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQ 266 (507)
Q Consensus 188 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 266 (507)
.|++++|.+++++..+... .. +.. .++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566677777776654211 10 111 45666666665543 345667777777777
Q ss_pred HHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHH
Q 010575 267 VFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERAR---VKPN--EITFIAILSACCHVGLVELGRR 332 (507)
Q Consensus 267 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~g~~~~a~~ 332 (507)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7766543 11 2467788888999999999999998876421 1121 3567788888888 99999999
Q ss_pred HHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 010575 333 YFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AAIWGSLLAASNIYGDVELGEC 400 (507)
Q Consensus 333 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 400 (507)
.|++....+.-..+ ..++..+...|.+.|++++|+..|+++ +..++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998764211111 467888899999999999999999987 11122 2356667777888899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHHHcCCchHHHH
Q 010575 401 ALQHLIKLEPHNSGN-----YAILSNIYAILGRWNESGK 434 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 434 (507)
.+++++ +.|+.... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99975543 34455555 5677766655
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.10 E-value=1.6e-07 Score=90.84 Aligned_cols=202 Identities=10% Similarity=-0.015 Sum_probs=121.4
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHh
Q 010575 192 NEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKA-LQVFEN 270 (507)
Q Consensus 192 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~ 270 (507)
+.+..+|++++... +.+...|...+.-+.+.|+++.|..+++...+. +.+...+.. |....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 45667888887753 445667777777778888999999999988887 444433322 2221111111 111111
Q ss_pred cC------------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHh
Q 010575 271 MK------------NKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACC-HVGLVELGRRYFNIM 337 (507)
Q Consensus 271 ~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 337 (507)
.. ......|...+....+.++.+.|..+|++. .. ...+...|......-. ..++++.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 10 001234556666666677788888888877 32 1224444432222111 223688888888888
Q ss_pred HHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 010575 338 KSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
.+.+ +-++..+...++.....|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 347 l~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 347 LLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7753 2234455666776777788888888888873 245667777766667788887777777775
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.08 E-value=1.3e-09 Score=90.20 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=94.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-Hhhc
Q 010575 282 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL-LGRA 360 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 360 (507)
+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|+..++++... .|++..+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3344445555555555555444321 113344455555555555555555555555432 1222222111111 1111
Q ss_pred CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHcCCchHHHHHH
Q 010575 361 GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN--SGNYAILSNIYAILGRWNESGKIR 436 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 436 (507)
+...+|...+++. ...| +...+..+..++...|++++|+..++++++.+|+. +.++..++.++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2222355555555 2334 57788889999999999999999999999999875 558999999999999999999999
Q ss_pred HHHH
Q 010575 437 KVMR 440 (507)
Q Consensus 437 ~~~~ 440 (507)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.07 E-value=2.2e-09 Score=106.84 Aligned_cols=160 Identities=9% Similarity=-0.012 Sum_probs=125.6
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 010575 258 SGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 334 (507)
Q Consensus 258 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (507)
.|++++|...|++..+ .+...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 356789999999999999999999999998863 335788899999999999999999999
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccC
Q 010575 335 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY---GDVELGECALQHLIKLE 409 (507)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 409 (507)
++..+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 2445788999999999999999999999987 3334 677888999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 010575 410 PHNSGNYAILS 420 (507)
Q Consensus 410 p~~~~~~~~l~ 420 (507)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888888776
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=8.7e-10 Score=87.99 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+.+.|++++|...|+++ ...| +...|..+..+|...|++++|+..|+++++++|+++.+|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456777888888999999999999888 3344 67789999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010575 425 ILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~ 442 (507)
+.|++++|++.|++....
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998754
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=2e-09 Score=83.24 Aligned_cols=93 Identities=10% Similarity=0.062 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 348 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
..+......|.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34445555566666666666666554 2222 455566666666666666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHH
Q 010575 426 LGRWNESGKIRKVMR 440 (507)
Q Consensus 426 ~g~~~~A~~~~~~~~ 440 (507)
.|++++|++.|++..
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666666654
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=1.5e-08 Score=102.59 Aligned_cols=190 Identities=12% Similarity=-0.031 Sum_probs=149.1
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHc
Q 010575 221 AQLGAVELGEWIHNYIE--------QYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALH 289 (507)
Q Consensus 221 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 289 (507)
...|++++|...++... +.. +.+...+..+..+|...|++++|...|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999988 332 55677888899999999999999999998875 4678999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 010575 290 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKL 369 (507)
Q Consensus 290 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 369 (507)
|++++|+..|++..+.. +-+...+..+..++...|++++ +..|+++.+. .+.+...|..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998863 2256788889999999999999 9999999864 244678899999999999999999999
Q ss_pred HhhC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHhccCCCCCch
Q 010575 370 LRRM-PFEAN-AAIWGSLLAASNIYGD-----VELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 370 ~~~~-~~~~~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~ 415 (507)
|+++ ...|+ ...+..+..++...++ .+...+..+...++.++++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 56675 4577777777766555 333444444444455554443
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=2.2e-09 Score=97.56 Aligned_cols=197 Identities=11% Similarity=-0.024 Sum_probs=149.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 010575 222 QLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSR 301 (507)
Q Consensus 222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (507)
..|++++|..++++..+.... . + +...++++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788899888887764311 1 0 1115788888888765 35678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCC--C--ChhHHHHHHHHHhhcCCHHHHHHHHhh
Q 010575 302 MERA----RVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIE--P--KIEQYGCMIDLLGRAGYLQEAEKLLRR 372 (507)
Q Consensus 302 m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (507)
..+. +-.+. ..+|..+...|...|++++|+..|++..+.+.-. + ...++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 3578888899999999999999999887542111 1 13577888899988 999999999988
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHHcCCchHHHHHHHH
Q 010575 373 M----PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS------GNYAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 373 ~----~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
. +...+ ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|+..+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 11111 45788889999999999999999999998776543 2677788888899999999999999
Q ss_pred HH
Q 010575 439 MR 440 (507)
Q Consensus 439 ~~ 440 (507)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.00 E-value=1.1e-07 Score=85.16 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=75.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC-----
Q 010575 290 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVE--LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY----- 362 (507)
Q Consensus 290 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 362 (507)
+++++++.+++++.+.. +-+..+|..-...+.+.|.++ ++++.++++.+. -+-|...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 44555555555555432 124444444444444444444 555555555542 12344444444444444443
Q ss_pred -HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHHhccC---CCCCchHHHHHHHHHHcCCchHHHHH
Q 010575 363 -LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV-ELGECALQHLIKLE---PHNSGNYAILSNIYAILGRWNESGKI 435 (507)
Q Consensus 363 -~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 435 (507)
++++++.++++ ...| |...|+.+...+.+.|+. +.+..+.+++++++ |.++.++..++++|.+.|+.++|+++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55555555544 2222 555565555555555553 22444555555444 55566666666666666666666666
Q ss_pred HHHHH
Q 010575 436 RKVMR 440 (507)
Q Consensus 436 ~~~~~ 440 (507)
++.+.
T Consensus 281 ~~~l~ 285 (306)
T 3dra_A 281 YDLLK 285 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66664
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.00 E-value=1.3e-09 Score=87.13 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=82.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
+...+..+...+.+.|++++|...|+++ ...| +...|..+..+|...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556677788888899999999988887 3334 6778888888999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010575 424 AILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~ 442 (507)
...|++++|++.+++....
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999888643
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=8.5e-09 Score=102.54 Aligned_cols=146 Identities=8% Similarity=-0.125 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 010575 224 GAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFS 300 (507)
Q Consensus 224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (507)
|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+ .+...|..+...|...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56666666666665543 33455666666666677777777777766554 234566666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc---CCHHHHHHHHhhC
Q 010575 301 RMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA---GYLQEAEKLLRRM 373 (507)
Q Consensus 301 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 373 (507)
+..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..+...+... |++++|.+.++++
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 666542 224556666666666777777777777766653 123455666666666666 6777777666665
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=5e-09 Score=81.00 Aligned_cols=114 Identities=12% Similarity=0.002 Sum_probs=94.2
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 010575 307 VKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWG 383 (507)
Q Consensus 307 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 383 (507)
+.|+. ..+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|+++ ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 45667788888899999999999888863 2446788888889999999999999999887 3334 677899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 384 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
.+..++...|++++|+..|+++++++|+++.++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999888888765
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=1.7e-08 Score=86.14 Aligned_cols=128 Identities=14% Similarity=-0.040 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLL 357 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (507)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|+..|++.... .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 34445556666677777776666552 445666666666666667777777766666653 133455566666666
Q ss_pred hhcCCHHHHHHHHhhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 358 GRAGYLQEAEKLLRRM-PFEA-N----------------AAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 358 ~~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
...|++++|.+.|+++ ...| + ...+..+..++...|++++|...+++++++.|+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 6666666666666655 1111 1 145555666666666666666666666666655
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=2.2e-08 Score=86.45 Aligned_cols=185 Identities=11% Similarity=-0.049 Sum_probs=132.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHH
Q 010575 209 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNT--IVPLNNALIDMYAKSGKIGKALQVFENMKN--KS-V---ITWT 280 (507)
Q Consensus 209 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~ 280 (507)
+...+..+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455667778899999999999999999864321 235677889999999999999999999875 32 2 2455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhh
Q 010575 281 TMIAGLAL------------------HGLGREALDMFSRMERARVKPNE-ITFIAILSACCHVGLVELGRRYFNIMKSRY 341 (507)
Q Consensus 281 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 341 (507)
.+..++.. .|++++|+..|+++.+. .|+. ......... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence 56666654 57899999999999986 3443 222211110 01111111
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 342 GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|...++.+....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12234677888999999999999987 33343 256888889999999999999999999998888654
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=3.3e-08 Score=84.10 Aligned_cols=134 Identities=11% Similarity=-0.018 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010575 249 NALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 325 (507)
Q Consensus 249 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 325 (507)
..+..+|.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +-+..++..+..++...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3466667777777777777776654 345677777777777777777777777777652 224566666666665544
Q ss_pred c--HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHH
Q 010575 326 L--VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLL 386 (507)
Q Consensus 326 ~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 386 (507)
. .+.+...++... ...|....+.....++...|++++|...|+++ ...|+......+.
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3 334444444443 22222233344555666677778888777776 5667765544443
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=8.4e-07 Score=79.34 Aligned_cols=228 Identities=9% Similarity=0.000 Sum_probs=168.6
Q ss_pred CChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---C
Q 010575 189 DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG--AVELGEWIHNYIEQYGLNTIVPLNNALIDMY----AKS---G 259 (507)
Q Consensus 189 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 259 (507)
...++|++++..++..+ +-+...++.--.++...+ +++++...++.+.... +.+..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 33457888888877743 223344555556666666 7888888888887765 44555555544444 444 7
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc------HH
Q 010575 260 KIGKALQVFENMKN---KSVITWTTMIAGLALHGLGR--EALDMFSRMERARVKPNEITFIAILSACCHVGL------VE 328 (507)
Q Consensus 260 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~------~~ 328 (507)
++++++.+++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 88899998888875 46678888777788888888 999999999987533 77777766666666666 88
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH-HHHHHhhC-CC----CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010575 329 LGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE-AEKLLRRM-PF----EANAAIWGSLLAASNIYGDVELGECAL 402 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 402 (507)
++++.++.+... .+-|...|+.+...+.+.|+..+ +..+.+++ .. ..++..+..++..+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999998864 35578889888888888887544 55677766 21 347788999999999999999999999
Q ss_pred HHHhc-cCCCCCchHHHHHH
Q 010575 403 QHLIK-LEPHNSGNYAILSN 421 (507)
Q Consensus 403 ~~~~~-~~p~~~~~~~~l~~ 421 (507)
+.+.+ .+|.....|...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99986 89998777776553
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.95 E-value=2.9e-08 Score=89.57 Aligned_cols=163 Identities=9% Similarity=-0.026 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHhHHhhC--CCCC--hh
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARVKPNE-----ITFIAILSACCHVGLVELGRRYFNIMKSRYG--IEPK--IE 348 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~--~~ 348 (507)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667788888999999888887765322111 1233455567788899999999988875311 1111 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CC
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN-----AAIWGSLLAASNIYGDVELGECALQHLIKLEPH------NS 413 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 413 (507)
+++.+...|...|++++|...|+++ ...|+ ..++..+...|...|++++|+..+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999998876 11222 257888999999999999999999999775432 14
Q ss_pred chHHHHHHHHHHcCCchHH-HHHHHHHH
Q 010575 414 GNYAILSNIYAILGRWNES-GKIRKVMR 440 (507)
Q Consensus 414 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 440 (507)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77787764
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=1.2e-07 Score=85.56 Aligned_cols=160 Identities=9% Similarity=-0.020 Sum_probs=119.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHH
Q 010575 281 TMIAGLALHGLGREALDMFSRMERARV-KPNEI----TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYG 351 (507)
Q Consensus 281 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 351 (507)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999988876421 22211 2334666677788999999999998863122223 23688
Q ss_pred HHHHHHhhcCCHHHHHHHHhhCC-----C--C-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchH
Q 010575 352 CMIDLLGRAGYLQEAEKLLRRMP-----F--E-A-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNY 416 (507)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~-----~--~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 416 (507)
.+...|...|++++|...|+++- . . + ...++..+...|...|++++|...+++++++.+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88899999999999999888761 1 1 1 12367888999999999999999999998765432 4678
Q ss_pred HHHHHHHHHcCC-chHHHHHHHHHH
Q 010575 417 AILSNIYAILGR-WNESGKIRKVMR 440 (507)
Q Consensus 417 ~~l~~~~~~~g~-~~~A~~~~~~~~ 440 (507)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 699999998875
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=1.3e-08 Score=84.09 Aligned_cols=156 Identities=9% Similarity=-0.012 Sum_probs=111.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 010575 248 NNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSA-CCH 323 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~ 323 (507)
+..+...+...|++++|...|+...+ .+...+..+...+...|++++|+..+++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34566777888888888888888775 35677888888888888888888888887664 3344333222211 112
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 010575 324 VGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN---AAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~ 399 (507)
.+....|+..+++..+. .+.+...+..+...+...|++++|...|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22333467788887753 2335778888888899999999999998887 44443 557888888899999999999
Q ss_pred HHHHHHhc
Q 010575 400 CALQHLIK 407 (507)
Q Consensus 400 ~~~~~~~~ 407 (507)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888753
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.94 E-value=1e-07 Score=92.17 Aligned_cols=355 Identities=9% Similarity=-0.008 Sum_probs=192.8
Q ss_pred cCC-CchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-hHHH
Q 010575 53 QTD-NPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC-IYDA 130 (507)
Q Consensus 53 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 130 (507)
+.| +++.|..+|+.+... -|. |+++.+..+|+..+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488889999888762 243 8999999999999884 4688899888887777663 4556
Q ss_pred HHHHHhcccC-C--C-ChhhHHHHHHHHH----hcCCHHHHHHHHHhcCC-CCh---hHHHHHHHHHHhC----------
Q 010575 131 RKVFDELSLR-V--W-NVAVWNTMVAGYA----KVGDLNNARALFELMTE-KNV---ISWTTLIAGYAQM---------- 188 (507)
Q Consensus 131 ~~~~~~~~~~-~--p-~~~~~~~li~~~~----~~~~~~~A~~~~~~~~~-~~~---~~~~~li~~~~~~---------- 188 (507)
..+|+..... + | +...|...+..+. ..++.+.+.++|++... |.. ..|......-...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 6777766543 2 2 5677777776654 24568888889988765 211 1222222111110
Q ss_pred ---CChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc--CC-----HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 010575 189 ---DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL--GA-----VELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS 258 (507)
Q Consensus 189 ---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (507)
+.+..|..+++.+...-...+...|...+.--... +- .+.+..+++.++... +.+..+|...+..+.+.
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 11222333333333210001222333333322211 10 234556777766653 44466666677777777
Q ss_pred CCHHHHHHHHHhcCC-CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHhcc
Q 010575 259 GKIGKALQVFENMKN-KSV-ITWTTMIAGLALHGLGREALDMFSRMERAR---------VKP---NEITFIAILSACCHV 324 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---------~~p---~~~~~~~l~~~~~~~ 324 (507)
|+.+.|..+|++... |+. ..|. .|+...+.++. ++.+.+.- ..+ ....|...+....+.
T Consensus 227 ~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 778887777776543 221 1222 22222122222 22222110 001 113445555555556
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC-CHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG-YLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELGECA 401 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (507)
++.+.|..+|+.+ .. . ..+...|...+..-...+ +.+.|..+|+.. ....++..|...+.-....|+.+.|..+
T Consensus 300 ~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 300 RGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp HCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6778888888777 32 1 223344433232222233 577888888766 1212344566666666777888888888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 402 LQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
|+++ +.+...|...+..-...|+.+.+.+++++..
T Consensus 377 ~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 377 FKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8877 2345567777766667788887877776665
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.93 E-value=1.7e-08 Score=82.27 Aligned_cols=127 Identities=9% Similarity=-0.008 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~ 389 (507)
..+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++. ... .+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666777788888888888887763 2335677777888888888888888888776 222 3567888889999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH--HHHcCCchHHHHHHHHHH
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYAILSNI--YAILGRWNESGKIRKVMR 440 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 440 (507)
...|++++|...++++++..|++...+..+..+ +.+.|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999988887554444 888899999999998764
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=9.3e-08 Score=85.79 Aligned_cols=162 Identities=9% Similarity=-0.061 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHH-HHHHH
Q 010575 209 DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKN--KSVITWT-TMIAG 285 (507)
Q Consensus 209 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l~~~ 285 (507)
+...+..+...+.+.|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+.+.. |+..... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455556666677777777777777777664 44556667777777888888888888877765 3332222 22233
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
+...++.++|+..+++..+.. +.+...+..+...+...|++++|+..|.++.+...-..+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 556667777777777776652 2355667777777777777777777777777641111124566667777777777766
Q ss_pred HHHHHhh
Q 010575 366 AEKLLRR 372 (507)
Q Consensus 366 A~~~~~~ 372 (507)
|...|++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=9.8e-08 Score=81.42 Aligned_cols=130 Identities=11% Similarity=-0.018 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 010575 248 NNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLV 327 (507)
Q Consensus 248 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 327 (507)
+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455566666677777776666666666666666666666677777776666666542 23455666666666666777
Q ss_pred HHHHHHHHHhHHhhCCC-------------C-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC
Q 010575 328 ELGRRYFNIMKSRYGIE-------------P-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN 378 (507)
Q Consensus 328 ~~a~~~~~~~~~~~~~~-------------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~ 378 (507)
++|+..|+++.+...-. | ....+..+..+|...|++++|...|+++ ...|+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 77776666666521100 0 1245566666666667777776666665 44443
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.89 E-value=2.4e-08 Score=77.82 Aligned_cols=117 Identities=11% Similarity=-0.040 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHH
Q 010575 310 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLA 387 (507)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~ 387 (507)
+...+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++++ ... .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456666777777777777777777777642 2335667777777777788888888877776 222 35678888888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCC
Q 010575 388 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGR 428 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 428 (507)
++...|++++|...++++++..|++...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 89999999999999999999999988899999988887764
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.89 E-value=3.2e-08 Score=76.04 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHH
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAA 388 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~ 388 (507)
...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|..+++++ . ...+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456667777777888888888888887764 2345667777888888888888888888776 2 23466788888889
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+...|++++|...++++++..|+++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999998888888888877654
No 127
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.2e-08 Score=79.01 Aligned_cols=96 Identities=11% Similarity=-0.028 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888876 3233 67788888888999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010575 425 ILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~ 442 (507)
..|++++|++.+++....
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888643
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.88 E-value=2.7e-08 Score=77.12 Aligned_cols=118 Identities=10% Similarity=0.001 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAA 388 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 388 (507)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666777777788888888888887763 2345677777888888888888888888776 2233 56788888889
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCch
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWN 430 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 430 (507)
+...|++++|...++++++..|+++..+..++.++.+.|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999888763
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.87 E-value=3.9e-09 Score=87.32 Aligned_cols=118 Identities=8% Similarity=0.056 Sum_probs=72.8
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHH-HHHcCCH--HH
Q 010575 323 HVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAA-SNIYGDV--EL 397 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~-~~~~g~~--~~ 397 (507)
..|++++|+..++..... .+.+...|..+...|...|++++|...|+++ ... .+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 455666666666666543 2334556666666666666666666666665 212 245556666666 5566776 77
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 398 GECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|...++++++.+|+++.++..++.+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777776543
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.87 E-value=3.1e-08 Score=78.44 Aligned_cols=95 Identities=15% Similarity=0.025 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666777788888888888888877 3334 67788888888999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHh
Q 010575 425 ILGRWNESGKIRKVMRD 441 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~ 441 (507)
..|++++|++.+++...
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988864
No 131
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=2.5e-07 Score=78.86 Aligned_cols=172 Identities=14% Similarity=0.008 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----ChHHHHHHH
Q 010575 59 NAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCK----CIYDARKVF 134 (507)
Q Consensus 59 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 134 (507)
+|+..|++..+.| ++..+..+...+...+++++|...|+...+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666643 55566666666666777777777777776654 45556666666666 5 677777777
Q ss_pred HhcccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHh----CCChhHHHHHHHHH
Q 010575 135 DELSLRVWNVAVWNTMVAGYAK----VGDLNNARALFELMTEKN-----VISWTTLIAGYAQ----MDQPNEAITLFRRM 201 (507)
Q Consensus 135 ~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~~~~~~a~~~~~~m 201 (507)
++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ +.++..|...|.. .+++++|+..|++.
T Consensus 77 ~~A~~~g-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 77 EKAVEAG-SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHTT-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 7664432 45555666666655 667777777777666532 4666677777766 66777777777777
Q ss_pred hHCCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHHHHcC
Q 010575 202 QVENVKPDEIAMLAALSACAQL-G-----AVELGEWIHNYIEQYG 240 (507)
Q Consensus 202 ~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 240 (507)
.+.+ .+...+..+...|... | ++++|...++...+.|
T Consensus 156 ~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6641 2333445555555432 2 6777777777766665
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.83 E-value=1.2e-08 Score=91.24 Aligned_cols=190 Identities=9% Similarity=-0.080 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKN---KSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSAC 321 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 321 (507)
...+..+...+...|++++|...|+...+ .+...|..+..+|...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44555666777777777777777776653 356677778888888888888888888877652 23567777888888
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010575 322 CHVGLVELGRRYFNIMKSRYGIEPKI-EQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGEC 400 (507)
Q Consensus 322 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (507)
...|++++|...|+++.+.. |+. ..+...+....+..+...... .......++......+.. + ..|+.++|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHH
Confidence 88888888888888877531 211 111111111111111111111 112222233333333322 2 3689999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHc-CCchHHHHHHHHHHh
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAIL-GRWNESGKIRKVMRD 441 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 441 (507)
.++++++.+|++......+...+.+. +.+++|.++|++..+
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999877777887777776 778999999998864
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=6.3e-07 Score=80.69 Aligned_cols=158 Identities=10% Similarity=-0.075 Sum_probs=119.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHH
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKNK---SV------ITWTTMIAGLALHGLGREALDMFSRMERARVK-PN----EITFI 315 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~ 315 (507)
..+..+...|++++|...++...+. +. ..+..+...+...+++++|+..|++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999887652 11 13334666677788999999999999874222 23 23688
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhC----CCC-ChhHHHHHHHHHhhcCCHHHHHHHHhhC-------CCCCC-HHHH
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYG----IEP-KIEQYGCMIDLLGRAGYLQEAEKLLRRM-------PFEAN-AAIW 382 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~ 382 (507)
.+..+|...|++++|+..|+++.+... ..+ ...++..+...|.+.|++++|...+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999999885211 111 1347788999999999999999999876 12222 6688
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHhc
Q 010575 383 GSLLAASNIYG-DVELGECALQHLIK 407 (507)
Q Consensus 383 ~~l~~~~~~~g-~~~~A~~~~~~~~~ 407 (507)
..+..++...| ++++|...+++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999999 57999999999865
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.81 E-value=4.5e-08 Score=90.00 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467788888889999999999998887 3333 67789999999999999999999999999999999999999999999
Q ss_pred HcCCchHH-HHHHHHHH
Q 010575 425 ILGRWNES-GKIRKVMR 440 (507)
Q Consensus 425 ~~g~~~~A-~~~~~~~~ 440 (507)
+.|++++| ..++++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666653
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.78 E-value=2.4e-07 Score=83.42 Aligned_cols=161 Identities=10% Similarity=-0.088 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKNK---SV------ITWTTMIAGLALHGLGREALDMFSRMERARV---KPN--EI 312 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~ 312 (507)
.+...+..+...|++++|.+.+....+. .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667788888999888888765431 11 2334456667788899999999998875321 222 35
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHhhC-C------CCC-CH
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-P------FEA-NA 379 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~~-~~ 379 (507)
+++.+...|...|++++|...|+++.+.....|+ ..++..+...|.+.|++++|...+++. . ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998732111222 257888999999999999999999876 1 111 25
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhc
Q 010575 380 AIWGSLLAASNIYGDVELG-ECALQHLIK 407 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 407 (507)
.+|..+...|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 788888865
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=9.5e-08 Score=83.45 Aligned_cols=124 Identities=7% Similarity=-0.135 Sum_probs=74.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCH----HHHHHHHHHHHH
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANA----AIWGSLLAASNI 391 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~ 391 (507)
.+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|++ ..+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 3445556667777777777666532 343334445555666777777777777655322322 255566666777
Q ss_pred cCCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 392 YGDVELGECALQHLIKLE--PH-NSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
.|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 777777777777775322 33 3345666677777777777777777777543
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=7.4e-08 Score=76.73 Aligned_cols=104 Identities=7% Similarity=-0.051 Sum_probs=88.2
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHH
Q 010575 308 KPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGS 384 (507)
Q Consensus 308 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 384 (507)
.|+ ...+..+...+.+.|++++|+..|+++... -+.+...|..+..+|...|++++|...|+++ ...| ++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 443 356777888899999999999999999864 2446888999999999999999999999988 3344 5678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 010575 385 LLAASNIYGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
+..+|...|++++|+..|++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999853
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=1.4e-07 Score=82.41 Aligned_cols=137 Identities=14% Similarity=-0.055 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHH
Q 010575 279 WTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK--IEQYGCMIDL 356 (507)
Q Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 356 (507)
+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHH
Confidence 445667788888999999988887764 354445555556788889999999999866531 1111 2367778889
Q ss_pred HhhcCCHHHHHHHHhhC-C--CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 010575 357 LGRAGYLQEAEKLLRRM-P--FEAN--AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILS 420 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 420 (507)
+.+.|++++|+..|++. . ..|. ...+.....++.+.|+.++|..+|+++...+|+ +.++..|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999988 2 2143 346777788899999999999999999999998 66666653
No 139
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.76 E-value=1.8e-07 Score=70.90 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILG 427 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 427 (507)
+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++..+..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 334444444445555555444444 1112 34444445555555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHH
Q 010575 428 RWNESGKIRKVMR 440 (507)
Q Consensus 428 ~~~~A~~~~~~~~ 440 (507)
++++|.+.+++..
T Consensus 87 ~~~~A~~~~~~~~ 99 (118)
T 1elw_A 87 RFEEAKRTYEEGL 99 (118)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555543
No 140
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.75 E-value=2.2e-08 Score=79.85 Aligned_cols=117 Identities=8% Similarity=-0.060 Sum_probs=91.7
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC
Q 010575 298 MFSRMERARVKP-NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF 375 (507)
Q Consensus 298 ~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 375 (507)
.|+++... .| +...+..+...+...|++++|+..|+.+... -+.+...|..+..+|...|++++|...|+++ ..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444443 34 3356667778888899999999999988863 2446778888889999999999999999887 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH
Q 010575 376 EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAI 418 (507)
Q Consensus 376 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 418 (507)
.| ++..+..+..++...|++++|+..|++++++.|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 34 56788889999999999999999999999999988766443
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.75 E-value=5.9e-08 Score=72.86 Aligned_cols=99 Identities=15% Similarity=0.054 Sum_probs=81.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCchHHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYGDVELGECALQHLIKLEPH--NSGNYAILSN 421 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 421 (507)
+...+..+...+...|++++|...++++ .. ..+...|..+...+...|++++|...++++++..|+ +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456667777888888888888888876 22 236677888888899999999999999999999999 8889999999
Q ss_pred HHHHc-CCchHHHHHHHHHHhCCC
Q 010575 422 IYAIL-GRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 422 ~~~~~-g~~~~A~~~~~~~~~~~~ 444 (507)
++.+. |++++|++.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998875544
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.74 E-value=3.7e-08 Score=75.46 Aligned_cols=94 Identities=17% Similarity=-0.016 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 426 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 426 (507)
.+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887 3344 6778888999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhC
Q 010575 427 GRWNESGKIRKVMRDM 442 (507)
Q Consensus 427 g~~~~A~~~~~~~~~~ 442 (507)
|++++|++.+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998643
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=2e-07 Score=75.72 Aligned_cols=102 Identities=11% Similarity=-0.029 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 389 (507)
..+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|+++ ...| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34444445555555555555555555442 1223444444445555555555555554444 1122 334444444445
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
...|++++|+..|+++++++|++...
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHH
Confidence 55555555555555555555554443
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.73 E-value=1e-07 Score=74.17 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=88.8
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 345 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
.+...+..+...+.+.|++++|...|+++ ...| +...+..+...+...|++++|...++++++..|+++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677888999999999999999999987 4444 678899999999999999999999999999999999999999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 010575 423 YAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~ 442 (507)
+.+.|++++|++.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998643
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.73 E-value=4.2e-08 Score=75.85 Aligned_cols=94 Identities=4% Similarity=-0.089 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc-------hHHH
Q 010575 348 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG-------NYAI 418 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 418 (507)
..+..+...+.+.|++++|+..|+++ ...| +...|..+..+|...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44566777777888888888888776 3334 5667788888888888888888888888888777553 5667
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 010575 419 LSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 419 l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
++.++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77788888888888888887753
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=2e-07 Score=74.13 Aligned_cols=94 Identities=16% Similarity=0.044 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
...+..+...+...|++++|...|++. ...|+ ...|..+...+...|++++|+..++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344555555555555555555555554 33444 3455555556666666666666666666666666666666666
Q ss_pred HHHHcCCchHHHHHHHHHH
Q 010575 422 IYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 422 ~~~~~g~~~~A~~~~~~~~ 440 (507)
+|...|++++|.+.+++..
T Consensus 108 ~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666654
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=2e-07 Score=70.55 Aligned_cols=111 Identities=13% Similarity=-0.003 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 010575 311 EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAA 388 (507)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 388 (507)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++. ...| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345666677777788888888888887753 2335677777788888888888888888776 2233 56788888889
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 389 SNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
+...|++++|...++++++.+|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999888877776654
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=2.4e-07 Score=71.01 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+...|++++|.+.++++ . ...+..++..+...+...|++++|...++++++..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999988 2 23467789999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010575 425 ILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~~ 442 (507)
..|++++|.++++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998743
No 149
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=1.4e-07 Score=73.98 Aligned_cols=98 Identities=10% Similarity=-0.010 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 345 PKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
.+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45667777778888888888888888776 2223 567788888888899999999999999999999988899999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 010575 423 YAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 423 ~~~~g~~~~A~~~~~~~~~~ 442 (507)
|...|++++|++.+++....
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999888643
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.70 E-value=1.2e-07 Score=79.90 Aligned_cols=93 Identities=13% Similarity=-0.013 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 010575 348 EQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAI 425 (507)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 425 (507)
..+..+..+|.+.|++++|...++++ ... .+...+..+..++...|++++|...+++++++.|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777788888888888888888877 223 3677888899999999999999999999999999999999999999999
Q ss_pred cCCchHHH-HHHHHHH
Q 010575 426 LGRWNESG-KIRKVMR 440 (507)
Q Consensus 426 ~g~~~~A~-~~~~~~~ 440 (507)
.|+.+++. ..+..+.
T Consensus 169 ~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHC----------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 88887777 4555554
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.69 E-value=2.1e-07 Score=71.98 Aligned_cols=97 Identities=15% Similarity=0.120 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
+...+..+...+...|++++|...++++ ... .+...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999987 223 46788999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010575 424 AILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~ 442 (507)
.+.|++++|.+.+++....
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998743
No 152
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.68 E-value=1e-07 Score=77.29 Aligned_cols=85 Identities=12% Similarity=0.070 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCE
Q 010575 379 AAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKR 458 (507)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (507)
...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++|+..+++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------------- 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------
Confidence 4578888888999999999999999999999999999999999999999999999999988632
Q ss_pred EEEEEeCCCCCCChH-HHHHHHHHHHHHHHhc
Q 010575 459 VHEFVAGDTSHPDFD-RLYQILCKINGQMKFA 489 (507)
Q Consensus 459 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 489 (507)
.|++. .+...+..+...+++.
T Consensus 127 ----------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 ----------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp ----------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHH
Confidence 45555 5566777666666554
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.68 E-value=1.7e-07 Score=77.34 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=101.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HhhcCCH--
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL-LGRAGYL-- 363 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 363 (507)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888999998887753 3467788888899999999999999999988642 3466778888888 7788998
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 364 QEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 364 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
++|...++++ ...| +...+..+...+...|++++|...++++++..|+++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999887 3334 5778888999999999999999999999999999866443
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.68 E-value=5.1e-07 Score=76.14 Aligned_cols=152 Identities=9% Similarity=-0.044 Sum_probs=85.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCC-ChhHHHHHHHHHhhcCCH
Q 010575 288 LHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEP-KIEQYGCMIDLLGRAGYL 363 (507)
Q Consensus 288 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 363 (507)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..... +..+ ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555665533333221 11233455555556666666666666666555421 1111 234455566666666777
Q ss_pred HHHHHHHhhC-C---CCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--C----CchHHHHHHHHHHcCC
Q 010575 364 QEAEKLLRRM-P---FEA-N----AAIWGSLLAASNIYGDVELGECALQHLIKLEPH--N----SGNYAILSNIYAILGR 428 (507)
Q Consensus 364 ~~A~~~~~~~-~---~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~ 428 (507)
++|...+++. . ..+ + ...+..+...+...|++++|...+++++++.+. + ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666654 1 111 2 234566667777778888888888777654321 1 1235677888888888
Q ss_pred chHHHHHHHHHH
Q 010575 429 WNESGKIRKVMR 440 (507)
Q Consensus 429 ~~~A~~~~~~~~ 440 (507)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887765
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.7e-07 Score=72.36 Aligned_cols=111 Identities=7% Similarity=-0.123 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 389 (507)
..+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|...++++ ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45566667777788888888888887763 2345677778888888888888888888776 3334 567888888889
Q ss_pred HHcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHH
Q 010575 390 NIYGDVELGECALQHLIKLE------PHNSGNYAILSNIYA 424 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 424 (507)
...|++++|...++++++++ |++..++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999888 887777777765543
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.67 E-value=1.3e-07 Score=74.80 Aligned_cols=107 Identities=9% Similarity=-0.013 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAAS 389 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 389 (507)
..+..+...+...|++++|+..|+.+... .+.+...|..+..+|.+.|++++|...|+++ ...| ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 45556667788888899998888888763 2446777888888888899999999988887 2233 566788888899
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 010575 390 NIYGDVELGECALQHLIKLEPHNSGNYAILS 420 (507)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 420 (507)
...|++++|...+++++++.|+++.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 9999999999999999999998877655543
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.67 E-value=2.7e-07 Score=75.02 Aligned_cols=94 Identities=11% Similarity=0.007 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555555566666666655554 2222 44455555555556666666666666666666655555666666666
Q ss_pred HcCCchHHHHHHHHHH
Q 010575 425 ILGRWNESGKIRKVMR 440 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~ 440 (507)
+.|++++|++.+++..
T Consensus 91 ~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGI 106 (164)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 6666666666555554
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.66 E-value=4.9e-06 Score=75.21 Aligned_cols=224 Identities=11% Similarity=-0.018 Sum_probs=106.6
Q ss_pred HhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-CHH
Q 010575 186 AQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKS-G-KIG 262 (507)
Q Consensus 186 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 262 (507)
.+.+..++|++++..++..+ +-+...++.--..+...| .++++..+++.+.... +.+..+|+.-..++... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34444556777777776643 123333444444444445 3566666666655543 34444554444444443 4 445
Q ss_pred HHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 263 KALQVFENMKNK---SVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 263 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
+++.+++.+.+. |..+|+--.-.+.+.|.++. . ....+.++++.++++.+
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~--------------~-------------~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR--------------I-------------SEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC--------------C-------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc--------------c-------------chhhHHHHHHHHHHHHH
Confidence 555555555442 23344433333333333330 0 00001144444444443
Q ss_pred hhCCCCChhHHHHHHHHHhhcCC-------HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCH---------------
Q 010575 340 RYGIEPKIEQYGCMIDLLGRAGY-------LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV--------------- 395 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~--------------- 395 (507)
. -+-|...|+.....+.+.++ ++++++.++++ ...| |...|+.+-..+.+.|+.
T Consensus 196 ~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~ 273 (349)
T 3q7a_A 196 V--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK 273 (349)
T ss_dssp H--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--
T ss_pred h--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccccc
Confidence 2 12234444444444444443 34455544443 2222 444454444444443332
Q ss_pred -----HHHHHHHHHHhcc------CCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 396 -----ELGECALQHLIKL------EPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 396 -----~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.........+... .+.++.++..|+++|.+.|+.++|.++++.+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2222222222222 24566788899999999999999999999985
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.65 E-value=3.1e-05 Score=69.98 Aligned_cols=247 Identities=12% Similarity=0.001 Sum_probs=147.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCC-ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc
Q 010575 147 WNTMVAGYAKVGDLNNARALFELMTE---KNVISWTTLIAGYAQMD-QPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 222 (507)
Q Consensus 147 ~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 222 (507)
++.+.....+.+..++|+++++.+.. .+..+|+.--..+...| .+++++++++.++..+. -+...++.-...+.+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 34444444555666889999999885 34567888777888888 59999999999998753 456667666666666
Q ss_pred c-C-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 010575 223 L-G-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFS 300 (507)
Q Consensus 223 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (507)
. + +++++..+++.+.+.. +.+..+|+.-.-++.+.|.++ ..+. ..+.++++.++
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~----------~~~~-------------~~~~eELe~~~ 191 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLG----------RISE-------------AQWGSELDWCN 191 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTT----------CCCH-------------HHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccc----------ccch-------------hhHHHHHHHHH
Confidence 5 6 8899999999998765 556667765555554444433 0000 01134444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCc-------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCH----------
Q 010575 301 RMERARVKPNEITFIAILSACCHVGL-------VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYL---------- 363 (507)
Q Consensus 301 ~m~~~g~~p~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------- 363 (507)
++.+..+ -|...|+.....+.+.+. ++++++.++++... .+-|...|+.+-..+.+.|+.
T Consensus 192 k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~ 268 (349)
T 3q7a_A 192 EMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268 (349)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred HHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence 4444321 144444444444444333 45555555555542 233445555444444444432
Q ss_pred ----------HHHHHHHhhC-CC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCCchHHHHHH
Q 010575 364 ----------QEAEKLLRRM-PF-------EANAAIWGSLLAASNIYGDVELGECALQHLI-KLEPHNSGNYAILSN 421 (507)
Q Consensus 364 ----------~~A~~~~~~~-~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 421 (507)
.+..+....+ .. .+++..+..++..|...|+.++|.++++.+. +.+|-....|...+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 269 YTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp GTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2333333333 11 3577788888888888899999999999985 678876555554443
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=4.7e-07 Score=71.87 Aligned_cols=112 Identities=13% Similarity=-0.007 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 010575 310 NEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWG 383 (507)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 383 (507)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 456667777777778888888888887774 3455 566777788888888888888888776 2233 567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 384 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
.+..++...|++++|...++++++++|++..++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88889999999999999999999999998887777766543
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=2.8e-07 Score=77.77 Aligned_cols=152 Identities=10% Similarity=-0.031 Sum_probs=86.3
Q ss_pred hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCcHH
Q 010575 257 KSGKIGKALQ---VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER----ARVKP-NEITFIAILSACCHVGLVE 328 (507)
Q Consensus 257 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~g~~~ 328 (507)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 33222222334555566666666666666666666544 11111 2245566666677777777
Q ss_pred HHHHHHHHhHHhhCCCC-C----hhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCC----HHHHHHHHHHHHHcCCH
Q 010575 329 LGRRYFNIMKSRYGIEP-K----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AAIWGSLLAASNIYGDV 395 (507)
Q Consensus 329 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~ 395 (507)
+|...+++........+ + ...+..+...+...|++++|...+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 77777776654311111 1 234566667777777777777777665 11112 22356677777888888
Q ss_pred HHHHHHHHHHhcc
Q 010575 396 ELGECALQHLIKL 408 (507)
Q Consensus 396 ~~A~~~~~~~~~~ 408 (507)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887654
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=4.2e-08 Score=82.71 Aligned_cols=117 Identities=12% Similarity=-0.023 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-C----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-N----------------AAIWGSLLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
...+..+...+.+.|++++|...|+++ ...| + ...|..+..++...|++++|+..+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345556666777777777777777765 1111 1 267888999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 010575 409 EPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKF 488 (507)
Q Consensus 409 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 488 (507)
+|+++.++..++.+|...|++++|++.+++.... .|++..++..+..+...+.+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------------------------NPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------------------------CCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998633 45556677777666666544
Q ss_pred c
Q 010575 489 A 489 (507)
Q Consensus 489 ~ 489 (507)
.
T Consensus 172 ~ 172 (198)
T 2fbn_A 172 A 172 (198)
T ss_dssp H
T ss_pred H
Confidence 4
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.63 E-value=1.2e-07 Score=74.62 Aligned_cols=62 Identities=11% Similarity=-0.037 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCCCchH----HHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHLIKL-------EPHNSGNY----AILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
..|..+..++...|++++|+..+++++++ +|++..+| ...+.++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888999999999999999999988 99999999 9999999999999999999999864
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.60 E-value=8.8e-07 Score=71.84 Aligned_cols=128 Identities=9% Similarity=-0.118 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.... .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 356667777778888888888888877652 335677777788888888888888888888764 24456777788888
Q ss_pred HhhcCCHHHHHHHHhhC-CCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Q 010575 357 LGRAGYLQEAEKLLRRM-PFEA-NAAIWGS--LLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
+...|++++|...|+++ ...| +...+.. .+..+...|++++|+..+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888876 2223 4444433 33346777888888888877643
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.59 E-value=3.8e-07 Score=71.40 Aligned_cols=114 Identities=10% Similarity=-0.105 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHH
Q 010575 309 PNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLL 386 (507)
Q Consensus 309 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 386 (507)
.+...+..+...+...|++++|...|+.+... .+.+...|..+..++...|++++|...++++ ...| +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35667777788888888888888888888764 2345677888888888888888888888877 2233 567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCC-----CCchHHHHHHHHH
Q 010575 387 AASNIYGDVELGECALQHLIKLEPH-----NSGNYAILSNIYA 424 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 424 (507)
.++...|++++|...+++++++.|+ +..+...+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999888877 4555555554443
No 166
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.58 E-value=2.4e-07 Score=85.11 Aligned_cols=96 Identities=6% Similarity=-0.040 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----------------AAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
...+..+...|.+.|++++|...|+++ ...|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 445566666666667777777666665 22222 4788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 410 PHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
|+++.++..++.+|...|++++|+..|++..+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999754
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.54 E-value=1.1e-06 Score=84.28 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467788888999999999999999887 3333 67789999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHH-HHHHHH
Q 010575 425 ILGRWNESGK-IRKVMR 440 (507)
Q Consensus 425 ~~g~~~~A~~-~~~~~~ 440 (507)
+.|+++++.+ .+++|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999998875 455554
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.53 E-value=6.5e-07 Score=69.19 Aligned_cols=95 Identities=13% Similarity=-0.001 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------CchHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-P-FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN-------SGNYA 417 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 417 (507)
...+..+...+...|++++|...|+++ . ...+...+..+...+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777788888888888888776 2 23366778888889999999999999999999888776 77899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 010575 418 ILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.++.++.+.|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999999874
No 169
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=1.9e-07 Score=83.51 Aligned_cols=94 Identities=11% Similarity=-0.049 Sum_probs=45.5
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASALRP-DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMY 121 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (507)
.+..+...+...|++++|+..|++..+. .| +...|..+...+...|++++|...++..++..+. +...+..+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3444444555555555555555555442 12 3334444444555555555555555555444321 344444555555
Q ss_pred HhcCChHHHHHHHHhccc
Q 010575 122 ASCKCIYDARKVFDELSL 139 (507)
Q Consensus 122 ~~~g~~~~A~~~~~~~~~ 139 (507)
...|++++|...|++...
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555554443
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.53 E-value=2.6e-07 Score=71.48 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=54.1
Q ss_pred HHHHHhhcCCHHHHHHHHhhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 010575 353 MIDLLGRAGYLQEAEKLLRRM-PFEAN-A---AIWGSLLAASNIYGDVELGECALQHLIKLEPHN---SGNYAILSNIYA 424 (507)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~-~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 424 (507)
+...+...|++++|...|+++ ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555566666666666554 11121 1 355556666666677777777777776666666 455666677777
Q ss_pred HcCCchHHHHHHHHHHh
Q 010575 425 ILGRWNESGKIRKVMRD 441 (507)
Q Consensus 425 ~~g~~~~A~~~~~~~~~ 441 (507)
+.|++++|++.++++..
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777766653
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.52 E-value=2.7e-07 Score=89.06 Aligned_cols=119 Identities=9% Similarity=-0.006 Sum_probs=96.1
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 010575 318 LSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDV 395 (507)
Q Consensus 318 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~ 395 (507)
...+.+.|++++|++.|+++.+. .+.+...|..+..+|.+.|++++|.+.++++ ...| +...|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34566788999999999988864 2335788888899999999999999999887 3344 677889999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHH--HHHcCCchHHHHHHHH
Q 010575 396 ELGECALQHLIKLEPHNSGNYAILSNI--YAILGRWNESGKIRKV 438 (507)
Q Consensus 396 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 438 (507)
++|+..+++++++.|++..++..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8889999999999883
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=4.8e-07 Score=69.14 Aligned_cols=98 Identities=8% Similarity=-0.007 Sum_probs=72.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHH
Q 010575 314 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNI 391 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 391 (507)
+..+...+.+.|++++|+..|+++.+. .+.+...|..+..++...|++++|+..|+++ ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344556677888888888888888763 2346777888888888888888888888877 3344 56678888888999
Q ss_pred cCCHHHHHHHHHHHhccCCCCC
Q 010575 392 YGDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.|++++|+..++++++.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999988754
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.50 E-value=3.7e-05 Score=69.16 Aligned_cols=162 Identities=8% Similarity=-0.039 Sum_probs=83.3
Q ss_pred HhCCChh-HHHHHHHHHhHCCCCCCHH-HHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 010575 186 AQMDQPN-EAITLFRRMQVENVKPDEI-AMLAALSACAQLGA----------VELGEWIHNYIEQYGLNTIVPLNNALID 253 (507)
Q Consensus 186 ~~~~~~~-~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 253 (507)
.+.|.++ +|+.++..++..+ |+.. .++.--..+...+. ++++..+++.+.... +.+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445544 6677777776643 3322 22222122211111 455666666666554 445566665555
Q ss_pred HHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---
Q 010575 254 MYAKSG--KIGKALQVFENMKN---KSVITWTTMIAGLALHGL-GREALDMFSRMERARVKPNEITFIAILSACCHV--- 324 (507)
Q Consensus 254 ~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--- 324 (507)
++...+ .+++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.++++++..+ -|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhc
Confidence 555555 36666666666654 344566655555556665 3667777776666532 2445555444333322
Q ss_pred -----------CcHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 010575 325 -----------GLVELGRRYFNIMKSRYGIEPKIEQYGCM 353 (507)
Q Consensus 325 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (507)
+.++++++.++..... .+-|...|+.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~ 233 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYH 233 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3455566666665542 23344455433
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.50 E-value=4.3e-07 Score=70.23 Aligned_cols=111 Identities=5% Similarity=-0.062 Sum_probs=72.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC----CCC----HHHHH
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF----EAN----AAIWG 383 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~~~----~~~~~ 383 (507)
.+..+...+...|++++|...|+++... .+.+...+..+...+...|++++|...++++ .. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455555666666666666666666543 2334555666666666666666666666655 11 122 56677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc
Q 010575 384 SLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAIL 426 (507)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 426 (507)
.+..++...|++++|...++++++..|+ +.....+..+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHH
Confidence 7888888888999999999988888884 66666666555443
No 175
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.49 E-value=1.6e-06 Score=66.86 Aligned_cols=95 Identities=11% Similarity=-0.021 Sum_probs=49.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CC----CCC----HHHHHHH
Q 010575 315 IAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PF----EAN----AAIWGSL 385 (507)
Q Consensus 315 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~~~----~~~~~~l 385 (507)
..+...+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|++.+++. .+ .++ ..+|..+
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 33444444444444444444444432 1222344444444444444444444444443 10 011 1345666
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
..++...|++++|++.|+++++..|+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 67777788888888888888777765
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.47 E-value=1.8e-06 Score=66.68 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=75.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh---hHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHH
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEPKI---EQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----AAIWGSLLA 387 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~ 387 (507)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|+++ ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556667788888888888777641 2222 46667777788888888888888776 22232 566778888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 010575 388 ASNIYGDVELGECALQHLIKLEPHNSGNYAILSNI 422 (507)
Q Consensus 388 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 422 (507)
++...|++++|...++++++..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 88999999999999999999999876655544433
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.46 E-value=4e-05 Score=68.98 Aligned_cols=216 Identities=14% Similarity=0.026 Sum_probs=154.5
Q ss_pred ccCCH-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010575 222 QLGAV-ELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK----------IGKALQVFENMKN---KSVITWTTMIAGLA 287 (507)
Q Consensus 222 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 287 (507)
+.|.+ ++|..+.+.+...+ +-+..+|+.--.++...+. +++++.+++.+.. .+..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34444 57888888888765 4455566654444443333 5778888887765 46678888777777
Q ss_pred HcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc----
Q 010575 288 LHG--LGREALDMFSRMERARVKPNEITFIAILSACCHVGL-VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRA---- 360 (507)
Q Consensus 288 ~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 360 (507)
..+ .+++++.+++++.+... -|..+|+.-...+...|. ++++++.++.+.+. -+-|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 777 48999999999998643 377788777777777787 58999999999974 355677787776666554
Q ss_pred ----------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCCCchHH
Q 010575 361 ----------GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY-----------GDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 361 ----------g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
+.++++++.++++ ...| |...|+-+-..+... +.++++++.+++++++.|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578899988877 3334 677787666655544 4589999999999999999854444
Q ss_pred HHHHHH---HHcCCchHHHHHHHHHHh
Q 010575 418 ILSNIY---AILGRWNESGKIRKVMRD 441 (507)
Q Consensus 418 ~l~~~~---~~~g~~~~A~~~~~~~~~ 441 (507)
.++... ...|..+++..++.++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 443322 235778889999999874
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.46 E-value=1.3e-07 Score=71.86 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=49.4
Q ss_pred cCCHHHHHHHHhhC-CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHH
Q 010575 360 AGYLQEAEKLLRRM-PF---EA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 434 (507)
Q Consensus 360 ~g~~~~A~~~~~~~-~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 434 (507)
.|++++|+..|+++ .. .| +...+..+..++...|++++|+..++++++.+|+++.++..++.++.+.|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555566666555 22 13 234556666666667777777777777777777766677777777777777777777
Q ss_pred HHHHHH
Q 010575 435 IRKVMR 440 (507)
Q Consensus 435 ~~~~~~ 440 (507)
.+++..
T Consensus 83 ~~~~al 88 (117)
T 3k9i_A 83 LLLKII 88 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.46 E-value=1.1e-06 Score=65.75 Aligned_cols=100 Identities=12% Similarity=-0.029 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC---CHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA---NAAIWGSLLA 387 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~ 387 (507)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 44555666777777777777777777753 2335666777777777888888888887776 2233 4677788888
Q ss_pred HHHHc-CCHHHHHHHHHHHhccCCCCC
Q 010575 388 ASNIY-GDVELGECALQHLIKLEPHNS 413 (507)
Q Consensus 388 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 413 (507)
.+... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 888888888888888888754
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.46 E-value=5.9e-07 Score=82.54 Aligned_cols=146 Identities=11% Similarity=-0.078 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 010575 277 ITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDL 356 (507)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (507)
..+..+...+.+.|++++|+..|++.... .|+... +...++..++...+ ....|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHHH
Confidence 45666777777888888888888887764 344331 22334444433221 12367788889
Q ss_pred HhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HHcCCchHHH
Q 010575 357 LGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY-AILGRWNESG 433 (507)
Q Consensus 357 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 433 (507)
|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|+++.++..+..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 3334 6778999999999999999999999999999999999999888774 4556778888
Q ss_pred HHHHHHHhC
Q 010575 434 KIRKVMRDM 442 (507)
Q Consensus 434 ~~~~~~~~~ 442 (507)
++++++...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888887643
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.44 E-value=1.4e-06 Score=81.02 Aligned_cols=90 Identities=9% Similarity=-0.044 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIY 423 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 423 (507)
+...|..+..+|.+.|++++|...++++ ...| +...|..+..+|...|++++|+..++++++++|++..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4577888899999999999999999987 5455 6778999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHH
Q 010575 424 AILGRWNESGKI 435 (507)
Q Consensus 424 ~~~g~~~~A~~~ 435 (507)
.+.++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=1.6e-06 Score=69.87 Aligned_cols=127 Identities=12% Similarity=-0.022 Sum_probs=72.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCC----HHH
Q 010575 314 FIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEAN----AAI 381 (507)
Q Consensus 314 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~ 381 (507)
+..+...+...|++++|...+++......-.++ ..++..+...+...|++++|...+++. +..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444455555555555444432100011 124445555555566666665555544 10111 335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCC------CCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 382 WGSLLAASNIYGDVELGECALQHLIKLEPH------NSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
+..+...+...|++++|...++++++..+. ...++..++.++...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 566667777788888888888877654221 23467788888888888888888888765
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.3e-06 Score=81.80 Aligned_cols=162 Identities=3% Similarity=-0.216 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHhHHhh---CCCCC-hhH
Q 010575 279 WTTMIAGLALHGLGREALDMFSRMERAR-VKPNE----ITFIAILSACCHVGLVELGRRYFNIMKSRY---GIEPK-IEQ 349 (507)
Q Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-~~~ 349 (507)
+..++..|...|++++|.+.+.++...- ..++. ...+.+...+...|+++.+..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777776654421 11111 122233334455677888887777765421 22222 456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhhC-----C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---C----Cc
Q 010575 350 YGCMIDLLGRAGYLQEAEKLLRRM-----P--FEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH---N----SG 414 (507)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~----~~ 414 (507)
+..+...|...|++++|..+++++ + .++ ...++..++..|...|++++|..++++++...+. . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677788888888888888887765 1 122 2346777778888888888888888888654322 1 13
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566777777888888888776664
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.41 E-value=3.2e-06 Score=81.17 Aligned_cols=94 Identities=6% Similarity=-0.034 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN----------------AAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
.|..+...|.+.|++++|...|+++ ...|+ ...|..+..+|.+.|++++|+..++++++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4444555555555555555555544 11111 568889999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 412 NSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 412 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
++.+|..++.+|...|++++|+..|++..+.
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999743
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.40 E-value=7.9e-07 Score=72.01 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=64.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC-chHHHHHHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNS-GNYAILSNI 422 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 422 (507)
+...|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|...++++++++|+++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467888888999999999999999887 3334 677899999999999999999999999999999987 445555544
Q ss_pred HH
Q 010575 423 YA 424 (507)
Q Consensus 423 ~~ 424 (507)
..
T Consensus 142 ~~ 143 (162)
T 3rkv_A 142 TE 143 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.37 E-value=1.8e-06 Score=80.16 Aligned_cols=111 Identities=8% Similarity=-0.023 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEA-NAAIWGSLLAASN 390 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~ 390 (507)
..+..+...+.+.|++++|+..|+++.+.. +... .....+++. ...| +...|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777777766421 0000 000111111 0122 4567888999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 391 IYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+.|++++|+..++++++++|+++.++..++.+|.+.|++++|++.+++..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999874
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.8e-07 Score=70.23 Aligned_cols=94 Identities=13% Similarity=0.001 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHH
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN------SGNYA 417 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 417 (507)
+...+..+...+.+.|++++|.+.|+++ ...| +...|..+..++...|++++|+..+++++++.|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888889999998888877 3233 67788889999999999999999999999999998 77788
Q ss_pred HHHHHHHHcCCchHHHHHHHHH
Q 010575 418 ILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
.++.++...|++++|++.++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8888888888888877666554
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.36 E-value=7.4e-07 Score=70.19 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=72.9
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhhCCCC-----C-----hhHHHHHHHHHhhcCCHHHHHHHHhhC-CC-------CC
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSRYGIEP-----K-----IEQYGCMIDLLGRAGYLQEAEKLLRRM-PF-------EA 377 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~~ 377 (507)
.....+.+.|++++|+..|++..+-..-.| + ...|..+..++.+.|++++|+..+++. .. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 344445555556666655555554311100 1 226777777777777777777777665 33 77
Q ss_pred CH-HHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 010575 378 NA-AIW----GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSN 421 (507)
Q Consensus 378 ~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 421 (507)
+. ..| .....++...|++++|+..|++++++.|++......+..
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 54 478 889999999999999999999999999998877665543
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.36 E-value=1.9e-05 Score=77.67 Aligned_cols=169 Identities=8% Similarity=-0.056 Sum_probs=132.1
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 010575 260 KIGKALQVFENMKN---KSVITWTTMIAGLALHGL----------GREALDMFSRMERARVKPNEITFIAILSACCHVG- 325 (507)
Q Consensus 260 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g- 325 (507)
..++|.+.++.+.. .+..+|+.-...+...|+ ++++++.++++.+... -+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccc
Confidence 34566777777664 244567666666666666 8899999999888643 36678887777777888
Q ss_pred -cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC-CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc---------
Q 010575 326 -LVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG-YLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY--------- 392 (507)
Q Consensus 326 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~--------- 392 (507)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999974 2446788888777888888 899999999888 4445 677888877777663
Q ss_pred -----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchH
Q 010575 393 -----GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNE 431 (507)
Q Consensus 393 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 431 (507)
+.++++++.+++++.++|++..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988655
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=4e-07 Score=69.14 Aligned_cols=93 Identities=17% Similarity=0.097 Sum_probs=65.1
Q ss_pred cCcHHHHHHHHHHhHHhhC--CCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 010575 324 VGLVELGRRYFNIMKSRYG--IEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~ 399 (507)
.|++++|+..|+++.+. + -+.+...+..+..+|...|++++|...|+++ ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777642 1 1223566777777888888888888888776 2233 5667888888888999999999
Q ss_pred HHHHHHhccCCCCCchHH
Q 010575 400 CALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~ 417 (507)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999888888765443
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.32 E-value=4.9e-06 Score=80.23 Aligned_cols=115 Identities=9% Similarity=-0.116 Sum_probs=55.9
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
+.+.|++++|+..+++..+.. +.+..++..+..++.+.|++++|+..++++.+. .+.+...+..+..+|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 344555555555555555431 123455555555555666666666666555542 22234555555556666666666
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 010575 366 AEKLLRRM-PFEA-NAAIWGSLLAA--SNIYGDVELGECALQ 403 (507)
Q Consensus 366 A~~~~~~~-~~~~-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 403 (507)
|.+.|+++ ...| +...+..+..+ +...|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66665554 1112 22233333333 555566666666666
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=4e-05 Score=73.08 Aligned_cols=192 Identities=11% Similarity=0.036 Sum_probs=97.7
Q ss_pred HHHHHhCCChhHHHHHHHHHhHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-Cc
Q 010575 182 IAGYAQMDQPNEAITLFRRMQVENVKPD----------------EIAMLAALSACAQLGAVELGEWIHNYIEQYGLN-TI 244 (507)
Q Consensus 182 i~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 244 (507)
...+.+.|++++|++.|....+...... ...+..+...|...|++++|...+..+.+.-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556778888888888888877542211 123455666666677777776666655442111 11
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC--
Q 010575 245 V----PLNNALIDMYAKSGKIGKALQVFENMKN-----KS----VITWTTMIAGLALHGLGREALDMFSRMERA--RV-- 307 (507)
Q Consensus 245 ~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~-- 307 (507)
. .+.+.+...+...|+++.|..++..... .+ ..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1222222333344566666665554432 01 234555566666666666666666555431 11
Q ss_pred CCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhh-CCC-C-C--hhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 308 KPN-EITFIAILSACCHVGLVELGRRYFNIMKSRY-GIE-P-K--IEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 308 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~-~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
.+. ..++..++..|...|++++|..++++..... ... | . ...+..+...+...|++++|...|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111 1345555555666666666666665554321 111 1 1 123444445555556666665555443
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=3.5e-06 Score=67.73 Aligned_cols=132 Identities=11% Similarity=-0.016 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCC----hh
Q 010575 278 TWTTMIAGLALHGLGREALDMFSRMERARV-KPN----EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPK----IE 348 (507)
Q Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~ 348 (507)
++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++........++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555555566666555555443210 011 134555666666667777777766665542111111 33
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhhC----CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 010575 349 QYGCMIDLLGRAGYLQEAEKLLRRM----PFEA----NAAIWGSLLAASNIYGDVELGECALQHLIKLE 409 (507)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (507)
.+..+...+...|++++|...+++. +... ....+..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4556666677777777777776655 1111 13456677778888888888888888887654
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.26 E-value=2.9e-06 Score=77.87 Aligned_cols=152 Identities=13% Similarity=0.016 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010575 245 VPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHV 324 (507)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 324 (507)
...+..+...+.+.|++++|...|+...+.+.... .+...++..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44567788888999999999999998765222111 1222333344433221 13677888899999
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHH-HHHcCCHHHHHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAA-SNIYGDVELGECA 401 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~-~~~~g~~~~A~~~ 401 (507)
|++++|+..++++.+. .+.+...|..+..+|...|++++|...|+++ ...|+ ...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 2446788899999999999999999999988 55564 3445555544 3455678888999
Q ss_pred HHHHhccCCCCC
Q 010575 402 LQHLIKLEPHNS 413 (507)
Q Consensus 402 ~~~~~~~~p~~~ 413 (507)
|+++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999998865
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.24 E-value=5.4e-06 Score=60.68 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+...+..+..++...|++++|+..|+++++++|+++.+|..++.+|.+.|++++|++.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678889999999999999999999999999999999999999999999999999999998864
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.24 E-value=1.4e-05 Score=76.60 Aligned_cols=124 Identities=14% Similarity=0.059 Sum_probs=98.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhhC--CCC----ChhHHHHHHHHHhhcCCHHHHHHHHhhC---------CCCCCH-HHHH
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYG--IEP----KIEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-AIWG 383 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~ 383 (507)
.+..+|++++|+.++++..+... +.| ...+++.|..+|...|++++|..+++++ +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999999988776421 222 2467888999999999999999988876 234443 4688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 384 SLLAASNIYGDVELGECALQHLIK-----LEPHNSGN---YAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
.|...|...|++++|+.+++++++ ++|++|.+ ...+..++...|++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999965 67887664 4578888889999999999999997543
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.20 E-value=6.6e-06 Score=58.78 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-PFE-ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYA 424 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 424 (507)
...+..+...+...|++++|...+++. ... .+...+..+..++...|++++|...++++++.+|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777778888888888888776 222 356678888888899999999999999999999998888888888887
Q ss_pred HcC
Q 010575 425 ILG 427 (507)
Q Consensus 425 ~~g 427 (507)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.14 E-value=9.9e-07 Score=69.30 Aligned_cols=83 Identities=6% Similarity=0.046 Sum_probs=57.2
Q ss_pred CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC-
Q 010575 361 GYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGD----------VELGECALQHLIKLEPHNSGNYAILSNIYAILG- 427 (507)
Q Consensus 361 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 427 (507)
+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3444444444444 2222 44444444444444443 569999999999999999999999999998875
Q ss_pred ----------CchHHHHHHHHHHhCC
Q 010575 428 ----------RWNESGKIRKVMRDMG 443 (507)
Q Consensus 428 ----------~~~~A~~~~~~~~~~~ 443 (507)
++++|++.|++..+.+
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8999999999887543
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.10 E-value=1.4e-05 Score=60.07 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=62.6
Q ss_pred HHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 365 EAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 365 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+|...|+++ ...| +...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|+..+++...
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555554 3334 5677888888889999999999999999999999888999999999999999999999988764
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=2.9e-05 Score=57.75 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010575 377 ANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDM 442 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 442 (507)
++...|..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|++.+++....
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345678889999999999999999999999999999999999999999999999999999998743
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=1.5e-05 Score=76.48 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=88.0
Q ss_pred HHhhcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCc---hHH
Q 010575 356 LLGRAGYLQEAEKLLRRM---------PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIK-----LEPHNSG---NYA 417 (507)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~ 417 (507)
.+..+|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++|. .++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 23333 34789999999999999999999999965 5677655 678
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 010575 418 ILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMK 487 (507)
Q Consensus 418 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 487 (507)
.|+.+|..+|++++|+.++++....-. ...| ..||...++..++++...+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VTHG-----------------PSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC-----------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HHhC-----------------CCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999863211 1112 568988888888877665444
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.01 E-value=3.3e-05 Score=55.02 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+...+..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|++.+++...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3457788888999999999999999999999999999999999999999999999999999874
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.01 E-value=8.3e-05 Score=57.97 Aligned_cols=112 Identities=10% Similarity=-0.111 Sum_probs=66.3
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGEC 400 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 400 (507)
+++++|...|++..+. + .|... |...|...+.+++|.++|++.-...++..+..|...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3455666666665543 2 22221 555555555566666666655223455566666666665 567777777
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCCC
Q 010575 401 ALQHLIKLEPHNSGNYAILSNIYAI----LGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 444 (507)
.|+++.+. .++.++..|+.+|.. .+++++|.+++++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77776554 345667777777776 6777777777777665543
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.00 E-value=3.1e-05 Score=55.32 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 376 EANAAIWGSLLAASNIYGD---VELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
.+++..+..+..++...++ .++|..+++++++.+|+++.++..++..+.+.|++++|+.+|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3577788888888765555 79999999999999999999999999999999999999999999986654
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.97 E-value=6.1e-06 Score=64.81 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=64.9
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC----------HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHc
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY----------LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIY 392 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 392 (507)
+.+++|...++...+. -+.+...|..+..++...|+ +++|+..|+++ .+.| +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4455555555555542 12344555555555555444 34666666665 3344 445666677776655
Q ss_pred -----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010575 393 -----------GDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMG 443 (507)
Q Consensus 393 -----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 443 (507)
|++++|+..|+++++++|++......+- ..++|.++.-.+...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHHHHHHHSS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhccCcccccc
Confidence 5899999999999999999754333321 2345555555554443
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.93 E-value=2.6e-05 Score=73.62 Aligned_cols=117 Identities=10% Similarity=0.066 Sum_probs=88.0
Q ss_pred HHHHhhcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCc---h
Q 010575 354 IDLLGRAGYLQEAEKLLRRM---------PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIK-----LEPHNSG---N 415 (507)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~ 415 (507)
+..+.+.|++++|..++++. +..|+ ..+++.++.+|...|++++|+.+++++++ .+|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455778888888888765 11222 34788889999999999999999999864 4566655 6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 010575 416 YAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKF 488 (507)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 488 (507)
+..|+.+|..+|++++|+.++++..+.-. ...| ..||...+++..|.+...+|+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~lG-----------------~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTHG-----------------REHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTC-----------------TTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HhcC-----------------CCChHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999863211 1112 5689888988889888877763
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.89 E-value=0.00035 Score=68.67 Aligned_cols=151 Identities=13% Similarity=0.020 Sum_probs=121.9
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc----------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 010575 290 GLGREALDMFSRMERARVKP-NEITFIAILSACCHVGL----------VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLG 358 (507)
Q Consensus 290 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (507)
...++|++.++++... .| +...|+.--.++...|+ +++++..++.+.+. .+-+..+|..-.-++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3457889999999986 44 44566655555555555 89999999999974 3556788888888888
Q ss_pred hcC--CHHHHHHHHhhC-CC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc-------
Q 010575 359 RAG--YLQEAEKLLRRM-PF-EANAAIWGSLLAASNIYG-DVELGECALQHLIKLEPHNSGNYAILSNIYAIL------- 426 (507)
Q Consensus 359 ~~g--~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 426 (507)
+.| +++++++.++++ .. ..+...|+.-..++...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 779999999998 33 347888998888888999 899999999999999999999999999998884
Q ss_pred -------CCchHHHHHHHHHHhCCC
Q 010575 427 -------GRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 427 -------g~~~~A~~~~~~~~~~~~ 444 (507)
+.++++++++++......
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 557899999988765443
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.86 E-value=4e-05 Score=55.69 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHhhcCCHHHHHHHHhhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 355 DLLGRAGYLQEAEKLLRRM-PFEA-NAA-IWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
..+.+.|++++|...|+++ ...| +.. .|..+..++...|++++|+..++++++++|+++.++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444555555555555544 1122 333 444455555555555555555555555555544443
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.82 E-value=8.9e-05 Score=57.52 Aligned_cols=90 Identities=12% Similarity=0.023 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcee
Q 010575 377 ANAAIWGSLLAASNIYG---DVELGECALQHLIKLE-P-HNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCS 451 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 451 (507)
++..+...+.+++.+.+ +.++++.+++..++.+ | ++...+..|+-+|.+.|++++|.++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 56666666667776666 5557777777776666 5 3456667777777777777777777777752
Q ss_pred EEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcc
Q 010575 452 YIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHL 492 (507)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 492 (507)
.+|++.....+...+.+.+++-|..
T Consensus 100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 100 ----------------TEPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 3556666666666666666666643
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.81 E-value=8e-05 Score=55.87 Aligned_cols=80 Identities=13% Similarity=0.003 Sum_probs=53.8
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010575 330 GRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
|+..|+++.+ ..+.+...+..+...|...|++++|...|+++ ...| +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555553 22334566667777777777777777777766 2223 456777777788888888888888888877
Q ss_pred cCCC
Q 010575 408 LEPH 411 (507)
Q Consensus 408 ~~p~ 411 (507)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7664
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.79 E-value=3e-05 Score=73.02 Aligned_cols=83 Identities=13% Similarity=-0.056 Sum_probs=66.8
Q ss_pred hcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCc---hHHHHH
Q 010575 359 RAGYLQEAEKLLRRM---------PFEAN-AAIWGSLLAASNIYGDVELGECALQHLIK-----LEPHNSG---NYAILS 420 (507)
Q Consensus 359 ~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~ 420 (507)
..|++++|..++++. +..|+ ..+++.+..+|...|++++|+.+++++++ ++|+++. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457788888877765 22333 35788899999999999999999999964 4666665 688999
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 010575 421 NIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~~~~ 441 (507)
.+|..+|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999863
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.76 E-value=1.2e-07 Score=86.72 Aligned_cols=250 Identities=15% Similarity=0.060 Sum_probs=128.0
Q ss_pred ChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH
Q 010575 25 FSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVG 104 (507)
Q Consensus 25 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 104 (507)
++++|.+.-++...|. .|..|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-.+.+....+
T Consensus 40 ~ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3444444444433332 2455555555555555554433211 2344455555555555555555555444333
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCC------------
Q 010575 105 TGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTE------------ 172 (507)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------ 172 (507)
..-+| .+=+.|+-+|++.++..+-.+++. +||..-...+.+-|...|.++.|.-+|..+..
T Consensus 112 ~~ke~--~IDteLi~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~ 184 (624)
T 3lvg_A 112 KARES--YVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG 184 (624)
T ss_dssp TCCST--TTTHHHHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCS
T ss_pred Hhccc--ccHHHHHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 32222 222345555555554332221111 33444444445555555555555444444331
Q ss_pred ------------CChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 010575 173 ------------KNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYG 240 (507)
Q Consensus 173 ------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 240 (507)
.++.+|..+-.+|...+++.-|--.--.+.- .|| ....++..|-+.|.+++.+.+++.-....
T Consensus 185 ~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 185 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp GGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 3567788888888888887766544333321 111 11234555677777777777777665322
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-------ChhHHHHHHHHHHHcCChHHHH
Q 010575 241 LNTIVPLNNALIDMYAKSGKIGKALQVFENMKN----K-------SVITWTTMIAGLALHGLGREAL 296 (507)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~ 296 (507)
.....+++.|.-.|++- ++++..+.++.... | ....|.-++-.|.+..+++.|.
T Consensus 260 -rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 260 -RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp -TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 45567777777777764 44555554443332 1 3346777777777777777664
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.0007 Score=52.61 Aligned_cols=112 Identities=6% Similarity=-0.115 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh----cCCHHH
Q 010575 290 GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGR----AGYLQE 365 (507)
Q Consensus 290 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 365 (507)
+++++|+..|++..+.| .|+.. |...|...+.+++|.+.|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44444 667777778888899999998874 467778888888887 789999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 010575 366 AEKLLRRMPFEANAAIWGSLLAASNI----YGDVELGECALQHLIKLEP 410 (507)
Q Consensus 366 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 410 (507)
|.++|++.-...++..+..|...|.. .++.++|...++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988334678888889888888 8999999999999987653
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.57 E-value=0.00013 Score=53.18 Aligned_cols=66 Identities=6% Similarity=-0.091 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 010575 346 KIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPH 411 (507)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 411 (507)
+...+..+...|...|++++|...|+++ ...| +...|..+..+|...|++++|+..+++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4566777777777777777777777776 2233 4557777777888888888888888888776554
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.53 E-value=0.00052 Score=49.57 Aligned_cols=86 Identities=10% Similarity=-0.030 Sum_probs=48.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHhhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHcC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIE-QYGCMIDLLGRAGYLQEAEKLLRRM-PFEAN-AAIWGSLLAASNIYG 393 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 393 (507)
....+...|++++|+..|+++.+. .+.+.. .+..+..+|...|++++|.+.|+++ ...|+ ...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 344555667777777777776653 122345 6666666677777777777777665 22232 222211 4
Q ss_pred CHHHHHHHHHHHhccCCCC
Q 010575 394 DVELGECALQHLIKLEPHN 412 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~ 412 (507)
.+.++...+++....+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4555666666665555554
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.51 E-value=0.0036 Score=56.58 Aligned_cols=137 Identities=11% Similarity=-0.020 Sum_probs=71.6
Q ss_pred CChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc---cC-----cHHHHHHHHHHhHH
Q 010575 274 KSVITWTTMIAGLA--LHG---LGREALDMFSRMERARVKPN-EITFIAILSACCH---VG-----LVELGRRYFNIMKS 339 (507)
Q Consensus 274 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~---~g-----~~~~a~~~~~~~~~ 339 (507)
.+...|...+.+.. ..+ ...+|..+|++.++. .|+ ...+..+..++.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35556666555432 222 346788888888875 454 3444444443320 00 01111111111111
Q ss_pred hhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 340 RYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
....+.++..|..+...+...|++++|...++++ ...|+...|..+...+.-.|+.++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0022445556666555555566666666666666 334565556566666666667777777666666666663
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.41 E-value=0.00088 Score=63.06 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=72.2
Q ss_pred ccCcHHHHHHHHHHhHHhh--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC---------CCCCCH-HHHHHHH
Q 010575 323 HVGLVELGRRYFNIMKSRY--GIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-AIWGSLL 386 (507)
Q Consensus 323 ~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~~l~ 386 (507)
..|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|..+++++ +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888988888876532 12222 367888899999999999999988876 234444 4688999
Q ss_pred HHHHHcCCHHHHHHHHHHHhc-----cCCCCCchHH
Q 010575 387 AASNIYGDVELGECALQHLIK-----LEPHNSGNYA 417 (507)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 417 (507)
..|...|++++|+.+++++++ ++|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999965 5788775443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.33 E-value=0.0018 Score=61.00 Aligned_cols=101 Identities=12% Similarity=-0.082 Sum_probs=75.5
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhh--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhC---------CCCCCH-HH
Q 010575 318 LSACCHVGLVELGRRYFNIMKSRY--GIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRM---------PFEANA-AI 381 (507)
Q Consensus 318 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~ 381 (507)
+..+.+.|++++|+..+++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++ +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445567788999998888887531 12222 356788888899999999999888876 234433 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCchHHH
Q 010575 382 WGSLLAASNIYGDVELGECALQHLIK-----LEPHNSGNYAI 418 (507)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~ 418 (507)
++.|...|...|++++|+.+++++++ ++|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88899999999999999999999964 67888765443
No 219
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.27 E-value=0.17 Score=49.78 Aligned_cols=113 Identities=13% Similarity=0.019 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEI----TFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEA 366 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (507)
+.+.|...|....... ..+.. ....+.......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6678888887775432 22322 2223333344445344555555554432 23333333344445567888888
Q ss_pred HHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 010575 367 EKLLRRMPFEA--NAAIWGSLLAASNIYGDVELGECALQHLIK 407 (507)
Q Consensus 367 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (507)
...|+.|+..+ .....-=+..++...|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888884332 222222234466677888888888888764
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.25 E-value=0.0017 Score=47.37 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHhhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 347 IEQYGCMIDLLGRAGYLQEAEKLLRRM-----P----FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
..-+..+...+.+.|++..|...|+.+ + ..+....+..+..++.+.|++++|...+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 333445566666666666666666554 0 1235668889999999999999999999999999999877766
Q ss_pred HHH
Q 010575 418 ILS 420 (507)
Q Consensus 418 ~l~ 420 (507)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.16 E-value=0.0012 Score=56.99 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=67.6
Q ss_pred HHHHHHHHhhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHc-CCchH
Q 010575 363 LQEAEKLLRRM-PFEAN---AAIWGSLLAASNI-----YGDVELGECALQHLIKLEPHN-SGNYAILSNIYAIL-GRWNE 431 (507)
Q Consensus 363 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 431 (507)
..+|...++++ .+.|+ ...|..+...|.. .|+.++|.++|+++++++|+. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555556555 44555 4567777777777 499999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 010575 432 SGKIRKVMRDMGVKKMPG 449 (507)
Q Consensus 432 A~~~~~~~~~~~~~~~~~ 449 (507)
|.+++++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998776654444
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.11 E-value=0.047 Score=56.43 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=95.8
Q ss_pred HHHHccCCcHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHH
Q 010575 84 KAVVKLSTIELGRE-IHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNN 162 (507)
Q Consensus 84 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 162 (507)
......++++.|.+ ++.. ++ +......++..+.+.|..+.|.++.+.- ..-.......|+++.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~----------~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ----------DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH----------HHHHHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc----------chheehhhhcCCHHH
Confidence 33445677777765 4311 11 1222366777788888888888766421 112345567888999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 010575 163 ARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLN 242 (507)
Q Consensus 163 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 242 (507)
|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.+ |..+...+...|+.+....+.+.....|.
T Consensus 671 A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 671 ARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 88887766 3567888999999999999999999888753 23344445556666665555555444431
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 243 TIVPLNNALIDMYAKSGKIGKALQVFEN 270 (507)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 270 (507)
++.-..+|.+.|++++|.++|..
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHH
Confidence 12333445566676666665443
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.10 E-value=0.0026 Score=47.35 Aligned_cols=64 Identities=9% Similarity=-0.105 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhccC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 377 ANAAIWGSLLAASNIYGDVEL---GECALQHLIKLE-P-HNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
++..+-..+.+++.+..+... ++.+++..++.+ | ........|+-++.+.|++++|.++++.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444444443333 455555544443 3 223344445555555555555555555554
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.05 E-value=0.002 Score=49.98 Aligned_cols=89 Identities=16% Similarity=0.047 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC---CHHHHHHHHhhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHH
Q 010575 327 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAG---YLQEAEKLLRRM-PFE-A--NAAIWGSLLAASNIYGDVELGE 399 (507)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~A~ 399 (507)
...+.+.|.+.... + +++..+...+..++++.+ +.++++.+++.. ... | +...+..+..+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34445555554442 2 356666666666677666 455777776665 222 4 3456677888899999999999
Q ss_pred HHHHHHhccCCCCCchHH
Q 010575 400 CALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~ 417 (507)
++++.+++++|++..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999999999755443
No 225
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.04 E-value=0.0062 Score=55.06 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHh--cc---CcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhh---cC-----C---HHHHHHHH
Q 010575 308 KPNEITFIAILSACC--HV---GLVELGRRYFNIMKSRYGIEPK-IEQYGCMIDLLGR---AG-----Y---LQEAEKLL 370 (507)
Q Consensus 308 ~p~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-----~---~~~A~~~~ 370 (507)
+.+...|...+++.. .. .+..+|..+|+++.+. .|+ ...|..+..+|.- .+ . ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 456667777766533 33 3468899999999964 565 3444444333321 11 1 11222222
Q ss_pred hhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 371 RRM-PFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 371 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
..+ ....++.+|..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.+++....+.
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 233 23457778888888888889999999999999999976 66778999999999999999999998865443
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.94 E-value=0.0065 Score=43.10 Aligned_cols=69 Identities=16% Similarity=0.017 Sum_probs=51.6
Q ss_pred CCChhHHHHHHHHHhhcCC---HHHHHHHHhhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 010575 344 EPKIEQYGCMIDLLGRAGY---LQEAEKLLRRM-PFEA-NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHN 412 (507)
Q Consensus 344 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 412 (507)
+.++..+..+..++...++ .++|..++++. ...| ++.....+...+...|++++|+..|+++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4566677777777654444 68888888877 3344 56677777888888999999999999999888883
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.92 E-value=0.077 Score=39.59 Aligned_cols=141 Identities=10% Similarity=0.039 Sum_probs=101.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 010575 286 LALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE 365 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (507)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34467778888888877763 24556666666555666666667777666543222 23455555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010575 366 AEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVK 445 (507)
Q Consensus 366 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 445 (507)
....+-.+. .+....+..+......|.-+.-.+++..++...|.++.++..++.+|.+.|+..+|.+++++.-+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555553 355566777788889999999999999977777777999999999999999999999999999888884
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.86 E-value=0.0086 Score=43.59 Aligned_cols=64 Identities=13% Similarity=-0.027 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010575 378 NAAIWGSLLAASNIYGDVELGECALQHLIKLE-------PHNSGNYAILSNIYAILGRWNESGKIRKVMRD 441 (507)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 441 (507)
+...+..++..+...|++..|...++.+++.. +..+.++..|+.+|.+.|++++|+.++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45566778889999999999999999997642 33456899999999999999999999999974
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.84 E-value=0.025 Score=58.49 Aligned_cols=152 Identities=15% Similarity=0.095 Sum_probs=74.7
Q ss_pred HhcCCHHHHHH-HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 010575 256 AKSGKIGKALQ-VFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYF 334 (507)
Q Consensus 256 ~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 334 (507)
...+++++|.+ ++..+. +......++..+.+.|..++|+++.+ +... -.......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~~---~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISP---------DQDQ---KFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCC---------CHHH---HHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCC---------Ccch---heehhhhcCCHHHHHHHH
Confidence 34566666665 443322 01122455555666666666665442 1110 012234456777776664
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 010575 335 NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSG 414 (507)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 414 (507)
+.+ .+...|..+...+.+.|+++.|.+.|.+++. |..+...+...|+.+...++.+.+...+
T Consensus 676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~~~~~a~~~~----- 737 (814)
T 3mkq_A 676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------LESLFLLHSSFNNKEGLVTLAKDAETTG----- 737 (814)
T ss_dssp TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-----
T ss_pred Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence 322 3556677777777777777777777776641 2333333444555544444433332211
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKIRKVM 439 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~~ 439 (507)
-+.....+|.+.|++++|++++.++
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1233333444455555555555444
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.64 E-value=0.053 Score=41.09 Aligned_cols=91 Identities=10% Similarity=-0.002 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcee
Q 010575 376 EANAAIWGSLLAASNIYGD---VELGECALQHLIKLEPH-NSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCS 451 (507)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 451 (507)
.|+..+--.+.+++.+..+ ..+++.+++..++..|. .......|+-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 4666666667777766654 34677777777776664 344556677777777777777777777762
Q ss_pred EEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcc
Q 010575 452 YIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAEHL 492 (507)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 492 (507)
..|++..+..+..-+.+.+.+-|..
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 3566666666767777777766643
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.44 E-value=2.7e-06 Score=78.12 Aligned_cols=242 Identities=10% Similarity=0.023 Sum_probs=163.5
Q ss_pred CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHH
Q 010575 75 DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGY 154 (507)
Q Consensus 75 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~ 154 (507)
.+..|..|..+....+...+|.+-| ++. .|+..|..++.+..+.|++++-.+.+...++..-+...=+.|+-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4567889999998888888876544 222 2566788999999999999999999988877644666667999999
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC--------------------CCCCHHHHH
Q 010575 155 AKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN--------------------VKPDEIAML 214 (507)
Q Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------~~~~~~~~~ 214 (507)
++.+++.+-++++. .|+..-...+..-|...|.++.|.-+|..+.... -..+..||.
T Consensus 127 Ak~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 127 AKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp HTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred HhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 99999876554433 3666666677778888888887776665442211 123566888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCC
Q 010575 215 AALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK---NKSVITWTTMIAGLALHGL 291 (507)
Q Consensus 215 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 291 (507)
.+-.+|...+.+..|...--.++-..-. ...++..|-..|.+++-+.+++.-. +.....|+-|.-.|++- +
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-C
T ss_pred HHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-C
Confidence 8888898888887775554444422111 1246666888899888888887654 35667888888888876 4
Q ss_pred hHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhccCcHHHHH
Q 010575 292 GREALDMFSRMERARVKPN-------EITFIAILSACCHVGLVELGR 331 (507)
Q Consensus 292 ~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~g~~~~a~ 331 (507)
+++.++.++..-.+=-.|. ...|.-++-.|.+-.+++.|.
T Consensus 278 PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 278 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6666666654332211121 223555555555556666554
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.32 E-value=0.023 Score=42.40 Aligned_cols=89 Identities=11% Similarity=0.016 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcee
Q 010575 376 EANAAIWGSLLAASNIYGD---VELGECALQHLIKLEPH-NSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCS 451 (507)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 451 (507)
.|++.+--.+.+++.+..+ ..+++.+++.+++.+|. ....+..|+-++.+.|++++|.++.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL----------- 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF----------- 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------
Confidence 4666666667777766654 34677777777777763 35566677778888888888888888776
Q ss_pred EEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcC
Q 010575 452 YIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQMKFAE 490 (507)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 490 (507)
...|++..+..+..-+.+.+.+-|
T Consensus 106 ---------------~~eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 106 ---------------EHERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp ---------------TTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------hhCCCCHHHHHHHHHHHHHHHhhc
Confidence 346666677777666666666543
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.18 Score=40.05 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=65.3
Q ss_pred HHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHH
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGR 96 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 96 (507)
.......|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... |..+.-.|.-.|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34455677778777777655 3456677888777788888877777777654 455555566667766655
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 010575 97 EIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDEL 137 (507)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 137 (507)
.+-+.....| . ++.....+.-.|+++++.++|.+.
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5544444433 1 334444555567777776666544
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.27 E-value=0.079 Score=39.43 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=62.1
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH---HHHHHhhC-CCC-C--CHHHHHHHHHHHHHcCCHHH
Q 010575 325 GLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQE---AEKLLRRM-PFE-A--NAAIWGSLLAASNIYGDVEL 397 (507)
Q Consensus 325 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~ 397 (507)
.....+.+.|...... + .++..+-..+..++++..+... ++.+++.. ... | .......+..++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555555555443 3 2666666667777777776555 77777766 222 3 23345567778999999999
Q ss_pred HHHHHHHHhccCCCCCchHHH
Q 010575 398 GECALQHLIKLEPHNSGNYAI 418 (507)
Q Consensus 398 A~~~~~~~~~~~p~~~~~~~~ 418 (507)
|.+.++.+++..|++..+...
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999998665443
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.38 Score=38.26 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=20.3
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 010575 157 VGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRM 201 (507)
Q Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 201 (507)
.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|+..
T Consensus 18 lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34444444443333 23344555555555555555555555444
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.083 Score=52.95 Aligned_cols=55 Identities=13% Similarity=-0.043 Sum_probs=51.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 386 LAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
...|...|+++.|+.+.++++...|.+..+|..|+.+|.+.|+|+.|+-.+..++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4457789999999999999999999999999999999999999999999999986
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.62 E-value=2.4 Score=43.53 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHHHHHHHHHccCChhHHHHHhccCCCCC--------------cccHHHHHHHH----HcCCCch----HHHHHHHHHHH
Q 010575 12 LLSRFIDSCSSLGFSDYAYSIFTHKSKPD--------------VYLYNTTIKAL----CQTDNPL----NAVILYNKIQA 69 (507)
Q Consensus 12 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~li~~~----~~~~~~~----~a~~~~~~m~~ 69 (507)
+...++..|.+.+...+|..+.-+..+-| ...|..++..+ ...-.++ +.+++.-.+..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Confidence 45667778888888888888876655411 13343333322 1122222 22222222222
Q ss_pred cCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHH
Q 010575 70 SALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVG 104 (507)
Q Consensus 70 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 104 (507)
. + + ..-|..+++.+.+.++.+.+.++|..+..
T Consensus 227 k-~-~-~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 227 N-M-P-NCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp H-S-S-SCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred h-C-C-chhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1 1 22477788888899999999999998763
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.33 E-value=3 Score=42.83 Aligned_cols=87 Identities=15% Similarity=-0.001 Sum_probs=37.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-ChhH--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCc
Q 010575 252 IDMYAKSGKIGKALQVFENMKNK-SVIT--WTTMIAGLALHGLGREALDMFSRMERARVKPNEIT--FIAILSACCHVGL 326 (507)
Q Consensus 252 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~ 326 (507)
...+...|+.+....++..+.+. +... .-.+.-++...|+.+.+..+.+.+... ..|.... ...+.-+|+..|+
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCC
Confidence 33344555555555555543321 1111 122223333455655555555555542 1111111 1122334555566
Q ss_pred HHHHHHHHHHhHH
Q 010575 327 VELGRRYFNIMKS 339 (507)
Q Consensus 327 ~~~a~~~~~~~~~ 339 (507)
.....+++..+.+
T Consensus 576 ~~aIq~LL~~~~~ 588 (963)
T 4ady_A 576 NSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 5555555555554
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.21 E-value=0.11 Score=39.63 Aligned_cols=105 Identities=11% Similarity=0.032 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHhHHhhCCCCChh-HHHHHHHH------HhhcCCHHHHHHHHhhC-C-
Q 010575 310 NEITFIAILSACCHVGLV------ELGRRYFNIMKSRYGIEPKIE-QYGCMIDL------LGRAGYLQEAEKLLRRM-P- 374 (507)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~-~- 374 (507)
|..+|-..+....+.|++ ++..++|+++.. .++|+.. .|...+.. +...++.++|.++|+.+ .
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444555555544445555 555666666655 4444321 11111111 12346677777777666 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 375 FEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
.+.=...|.....--.+.|+...|.+++.++++..|.....+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 111266777777777888999999999999988888754333
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.91 E-value=0.16 Score=44.03 Aligned_cols=82 Identities=13% Similarity=0.011 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCC--CC---hhHHHHHHHHHHhC-----CChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc-CCHHHH
Q 010575 161 NNARALFELMTE--KN---VISWTTLIAGYAQM-----DQPNEAITLFRRMQVENVKPDEIAMLAALSACAQL-GAVELG 229 (507)
Q Consensus 161 ~~A~~~~~~~~~--~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a 229 (507)
..|...+++..+ |+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 445555555543 22 34666666666663 67777777777766643211244555555656553 667777
Q ss_pred HHHHHHHHHcCCC
Q 010575 230 EWIHNYIEQYGLN 242 (507)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (507)
...+++.......
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 7777776665544
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.77 E-value=0.31 Score=37.32 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=72.7
Q ss_pred CCCcccHHHHHHHHHcCCCc------hHHHHHHHHHHHcCCCCCccc----HHHHHHH---HHccCCcHHHHHHHHHHHH
Q 010575 38 KPDVYLYNTTIKALCQTDNP------LNAVILYNKIQASALRPDNYS----FPFVLKA---VVKLSTIELGREIHCQTVG 104 (507)
Q Consensus 38 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~----~~~l~~~---~~~~~~~~~a~~~~~~~~~ 104 (507)
..|..+|-..+..+-+.|++ ++.+++|++... .++|+... |..+--- +...++.+.|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45677788888888777888 788888887776 35554321 2211111 1234788888888888877
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHH
Q 010575 105 TGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMV 151 (507)
Q Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li 151 (507)
.+-.- ..+|....+.-.+.|++..|.+++.......| +.......+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 63333 66666666777788888888888888777655 333343333
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.18 E-value=1.3 Score=33.19 Aligned_cols=138 Identities=9% Similarity=-0.042 Sum_probs=72.9
Q ss_pred ccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010575 88 KLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALF 167 (507)
Q Consensus 88 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 167 (507)
-.|..++..++..+..+.. +..-+|-+|.-....-+-+-..++++.+-... |.. .+|++......+
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF-Dis----------~C~NlKrVi~C~ 84 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF-DLD----------KCQNLKSVVECG 84 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS-CGG----------GCSCTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc-CcH----------hhhcHHHHHHHH
Confidence 4455666666666655542 34445555554455555555555555544321 111 123333333333
Q ss_pred HhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 010575 168 ELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGL 241 (507)
Q Consensus 168 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 241 (507)
-.+.. +....+.-+......|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 85 ~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 85 VINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 32221 3334455556666677777777776665432 355666666667777777777777666666666554
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.18 E-value=4.2 Score=35.85 Aligned_cols=182 Identities=13% Similarity=0.116 Sum_probs=101.9
Q ss_pred HHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHH--
Q 010575 120 MYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITL-- 197 (507)
Q Consensus 120 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-- 197 (507)
.-...|++=+|.+.++ ++..-|.+.+++++|++++.. -...+.+.|+...|.++
T Consensus 22 ~~I~~G~yYEAhQ~~R-------------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 22 NKIKAGDYYEAHQTLR-------------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHTCHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred HHhhccChHHHHHHHH-------------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHH
Confidence 3344566656655544 344456777777777776543 22344556666555443
Q ss_pred --HHHHhHCCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 010575 198 --FRRMQVENVKPDEIAMLAALSACAQLGAVE-LGEWIHNYIE----QYG--LNTIVPLNNALIDMYAKSGKIGKALQVF 268 (507)
Q Consensus 198 --~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 268 (507)
++...+.+.+++......++..+.....-+ .-..+++.++ +.| ..-++.....+...|.+.|++.+|+..|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 444555677788777777777765533111 1123333333 332 1246677888899999999999999888
Q ss_pred HhcCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 269 ENMKNKSVITWTTMIAGLALH---GLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
-.-...+...+..++--+... |...++ +...-..++ .|.-.|+...|..+|+...+.
T Consensus 158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 633322444444444333332 222221 111112222 344568899998888877654
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.31 Score=48.84 Aligned_cols=125 Identities=10% Similarity=0.005 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCC-chHHHHHHHHHHHcCCCCCcccHH--HHHHHHHccCC-cHHHHHHHHHHHHc------CCCC-cH--
Q 010575 45 NTTIKALCQTDN-PLNAVILYNKIQASALRPDNYSFP--FVLKAVVKLST-IELGREIHCQTVGT------GLDS-DV-- 111 (507)
Q Consensus 45 ~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~-~~-- 111 (507)
..++..+...++ .+.|+.+|+++.... |....+. .++..+...++ --+|.+++.+.++. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344555556666 477999999998853 5433322 22333323322 22344444444321 1111 11
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 112 --------HVVAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFELMT 171 (507)
Q Consensus 112 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 171 (507)
.....=++.+...|+++-|+++-++.....| +..+|..|..+|...|+++.|+-.++.++
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222234557778999999999999988888 68899999999999999999999999987
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.00 E-value=0.39 Score=44.42 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH-----hCCCccCCc
Q 010575 382 WGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR-----DMGVKKMPG 449 (507)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 449 (507)
...++.++...|++++|...++.++..+|-+...+..++.+|.+.|+..+|++.|+.+. +-|+.+.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44566677888999999999999999999988899999999999999999999988875 346665544
No 246
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.79 E-value=6.7 Score=34.87 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=21.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMD 189 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 189 (507)
|......+...|.+.+++.+|...|-.-.++++..+..++..+...+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 44444455555555555555555553222222244444444443333
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.69 E-value=0.92 Score=35.45 Aligned_cols=53 Identities=9% Similarity=-0.034 Sum_probs=30.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CCh-------hHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010575 251 LIDMYAKSGKIGKALQVFENMKN-----KSV-------ITWTTMIAGLALHGLGREALDMFSRME 303 (507)
Q Consensus 251 l~~~~~~~~~~~~A~~~~~~~~~-----~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~ 303 (507)
-+..+...|.++.|+-+.+.+.. ++. .++..+..++...+++..|...|++..
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 35556666777777666554331 221 144455566666666666666666653
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.30 E-value=9.7 Score=35.77 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhHC--CCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQVE--NVKPD---EIAMLAALSACAQLGAVELGEWIHNYI 236 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~ 236 (507)
..|...|...|++.+|.+++..+... |.... ...+...++.|...+++..|..++..+
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45666677777777777777776532 11111 123444555566666666666655554
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.26 E-value=2.8 Score=32.74 Aligned_cols=61 Identities=5% Similarity=-0.020 Sum_probs=32.1
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCCc-------ccHHHHHHHHHccCCcHHHHHHHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQAS-ALRPDN-------YSFPFVLKAVVKLSTIELGREIHCQTV 103 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 103 (507)
.+-.-++.+...|.++.|+-+.+.+... +..|+. .++..+..++...+++..|...|++.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344455556666666666655554432 112332 133445556666666666666666654
No 250
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.17 E-value=5.3 Score=32.48 Aligned_cols=178 Identities=9% Similarity=0.032 Sum_probs=95.9
Q ss_pred hccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHH
Q 010575 33 FTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVH 112 (507)
Q Consensus 33 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 112 (507)
++.+..+|...-...+..+.+.+..+.. ..+..+.. .++...-...+.++...++.+....+. .+.. .++..
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~~ 91 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGW 91 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHH
Confidence 3334445544444555555555543333 33333332 245555455556666666544333333 2322 35666
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChh
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPN 192 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 192 (507)
+....+.++.+.|+.+....+.+.+.. ++...-...+.++.+.++.+....+...+..++...-...+.++.+.|. .
T Consensus 92 vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~ 168 (201)
T 3ltj_A 92 VRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-E 168 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-h
Confidence 667777777777775544444444433 3555556666777777765555555555556676666666666666665 4
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC
Q 010575 193 EAITLFRRMQVENVKPDEIAMLAALSACAQLG 224 (507)
Q Consensus 193 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 224 (507)
++...+..+... ++...-...+.++.+.+
T Consensus 169 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 169 RVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 566666666643 45555555555555443
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.00 E-value=1.3 Score=31.05 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
+.-++.+-+..+....+.|++......+.+|.+.+++..|.++|+.++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455677777888888899999999999999999999999999999998764433 455666664
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.73 E-value=4.3 Score=30.75 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=48.2
Q ss_pred CCChhHHHHHHHHHhhcCCH---HHHHHHHhhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 010575 344 EPKIEQYGCMIDLLGRAGYL---QEAEKLLRRM-PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGN 415 (507)
Q Consensus 344 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 415 (507)
.|+..+-..+..++.+..+. .+++.+++.. ...| .......+..++.+.|++++|.++.+.+++..|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45555555555566655543 3455555555 2223 23345567778999999999999999999999997543
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.67 E-value=3.4 Score=44.38 Aligned_cols=126 Identities=9% Similarity=-0.004 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccC----CCC--hhhHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHHHHHHHH
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLR----VWN--VAVWNTMVAGYAKVGDLNNARALFELMTEKN--VISWTTLIAG 184 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~li~~ 184 (507)
-|..++..+.+.|.++.+.++-....+. .++ ...|..+...+...|++++|...+-.++... ......|+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3555566666666666555554433221 111 1235556666666666666666665554221 1233334433
Q ss_pred HHh------------CCChhHHHHHHHHHhHCC--CCCCHHHHHHHHHHHhccCCHHHH-HHHHHHHHH
Q 010575 185 YAQ------------MDQPNEAITLFRRMQVEN--VKPDEIAMLAALSACAQLGAVELG-EWIHNYIEQ 238 (507)
Q Consensus 185 ~~~------------~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~ 238 (507)
.+. .|..++..+++....+.. +.....-|..|-.-+...|++.+| .-+|+.+.+
T Consensus 981 lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 981 LTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 333 344455555554432211 111112344444444566666544 455555544
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.43 E-value=9.2 Score=34.00 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHH----HHHhHCCCCCCHHHHHHHHHHHhccC
Q 010575 149 TMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLF----RRMQVENVKPDEIAMLAALSACAQLG 224 (507)
Q Consensus 149 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~ll~~~~~~~ 224 (507)
++..-|.+.+++++|++++.. -...+.+.|+...+.++- +...+.++++|......++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 334446677777777776543 223345556655544433 44455667777777777777665554
Q ss_pred CHH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 010575 225 AVE-LGEWIHNYIE----QYG--LNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALD 297 (507)
Q Consensus 225 ~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 297 (507)
.-+ .-..+.+.++ +.| ..-++.....+...|.+.+++.+|+..|-.-.++++..+..++--+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--- 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--- 185 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence 311 1122333333 223 234567777888999999999999998853222233555444433333322111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 010575 298 MFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS 339 (507)
Q Consensus 298 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 339 (507)
++...-..++ -|...+++..|..+++...+
T Consensus 186 -----------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -----------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34556788888887766654
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.38 E-value=12 Score=35.18 Aligned_cols=205 Identities=10% Similarity=0.088 Sum_probs=126.4
Q ss_pred CChhHHHHHHHHHhHC-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchh--HHHHHHHHHHhcCC
Q 010575 189 DQPNEAITLFRRMQVE-----NVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY-GLNTIVP--LNNALIDMYAKSGK 260 (507)
Q Consensus 189 ~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~~~ 260 (507)
|+++.|++.+..+.+. +..........++..|...++++...+.+..+.+. |..+... ..+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788898887666542 34556777888999999999999988877766543 3222211 11222233333333
Q ss_pred H--HHHHHHHHhcCC---CC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHhc
Q 010575 261 I--GKALQVFENMKN---KS-------VITWTTMIAGLALHGLGREALDMFSRMERA--RVKPNE---ITFIAILSACCH 323 (507)
Q Consensus 261 ~--~~A~~~~~~~~~---~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~---~~~~~l~~~~~~ 323 (507)
. +.-..+...+.. .- ......|...|...|++.+|..++.++... |..... ..+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 223344443332 11 123456788899999999999999998642 322221 345566778889
Q ss_pred cCcHHHHHHHHHHhHHh-hCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010575 324 VGLVELGRRYFNIMKSR-YGIEPK----IEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 324 ~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
.+++.+|..++.++... +...++ ...+...+..+...+++.+|-+.|..+ ...+...++....
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~~~ 257 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEAKW 257 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHHHH
Confidence 99999999999887532 122222 234566777777888998888776554 3334445555554
Q ss_pred HHHHHHH
Q 010575 399 ECALQHL 405 (507)
Q Consensus 399 ~~~~~~~ 405 (507)
..++..+
T Consensus 258 ~~~L~~~ 264 (445)
T 4b4t_P 258 KPVLSHI 264 (445)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.22 E-value=1.8 Score=30.38 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 010575 56 NPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119 (507)
Q Consensus 56 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (507)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444666777777777788888888888888888888888888888776542 333445665554
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.02 E-value=4.7 Score=30.11 Aligned_cols=73 Identities=14% Similarity=0.012 Sum_probs=45.5
Q ss_pred CChhHHHHHHHHHhhcCCH---HHHHHHHhhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 010575 345 PKIEQYGCMIDLLGRAGYL---QEAEKLLRRM-PFEA--NAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYA 417 (507)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 417 (507)
|++.+-..+..++++..+. .+++.+++.. ...| ....+-.+..++.+.|++++|.++.+.+++..|++..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4444444455555554433 3455555554 2223 2345666777888899999999999999999998755433
No 258
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.70 E-value=7.4 Score=31.86 Aligned_cols=91 Identities=10% Similarity=0.119 Sum_probs=39.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc
Q 010575 143 NVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQ 222 (507)
Q Consensus 143 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 222 (507)
+...-...+.++.+.++.+....+.+.+..++...-...+.++.+.+.. ++...+..+.. .++...-...+.++.+
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333344444444444433333333333344544444444444444443 23333434432 2444445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 010575 223 LGAVELGEWIHNYIEQ 238 (507)
Q Consensus 223 ~~~~~~a~~~~~~~~~ 238 (507)
.+.. .+...+..+.+
T Consensus 170 ~~~~-~~~~~L~~~l~ 184 (211)
T 3ltm_A 170 IGGE-RVRAAMEKLAE 184 (211)
T ss_dssp HCSH-HHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHh
Confidence 5553 33333444433
No 259
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.62 E-value=7.5 Score=31.82 Aligned_cols=188 Identities=10% Similarity=0.030 Sum_probs=116.2
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHH
Q 010575 24 GFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTV 103 (507)
Q Consensus 24 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 103 (507)
++.+....+.+.+..++...-...+..+.+.|..+ +...+..+.. .++...-...+.++...++.+....+ ..+.
T Consensus 16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l 90 (211)
T 3ltm_A 16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPL-IKAL 90 (211)
T ss_dssp CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHH-HHHT
T ss_pred cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHH-HHHH
Confidence 34444455555566677776677777777777644 4444444444 25666666677777777765443333 3333
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 010575 104 GTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIA 183 (507)
Q Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 183 (507)
-.++..+....+.++.+.|+.+....+.+.+.. ++...-...+.++.+.++.+....+.+.+..++...-...+.
T Consensus 91 ---~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~ 165 (211)
T 3ltm_A 91 ---KDEDGWVRQSAAVALGQIGDERAVEPLIKALKD--EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAAD 165 (211)
T ss_dssp ---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred ---cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 246777777888888888876555555554433 366666777777777787665555556566677777677777
Q ss_pred HHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 010575 184 GYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA 225 (507)
Q Consensus 184 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 225 (507)
++.+.+. .++...+..+.+. ++...-...+.++.+.+.
T Consensus 166 aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC---
T ss_pred HHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCC
Confidence 7777775 5566667676653 455555666666655543
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.08 E-value=18 Score=35.51 Aligned_cols=77 Identities=8% Similarity=-0.092 Sum_probs=45.3
Q ss_pred HHHHHHHHccCChhHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc
Q 010575 14 SRFIDSCSSLGFSDYAYSIFTHKSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI 92 (507)
Q Consensus 14 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 92 (507)
+..+..+.+.+++.....++.. +..+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 3445556667777777776665 33344444455666677777766766666665544 23444566666666655544
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.79 E-value=10 Score=32.33 Aligned_cols=122 Identities=13% Similarity=0.073 Sum_probs=76.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChh----HHHHHHHHHhh
Q 010575 284 AGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIE----QYGCMIDLLGR 359 (507)
Q Consensus 284 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 359 (507)
....+.|..++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---
Confidence 34567788888888888877763 346667777888888899999998888887743 45432 33333332
Q ss_pred cCCHHHHH-HHHhhC--C--CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccCCCCCchH
Q 010575 360 AGYLQEAE-KLLRRM--P--FEANAAIWGSLLAAS--NIYGDVELGECALQHLIKLEPHNSGNY 416 (507)
Q Consensus 360 ~g~~~~A~-~~~~~~--~--~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~~~ 416 (507)
+... ++|..- | ......-...++.+. ...|+.++|..+-.++++..|..+...
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 137 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCc
Confidence 1121 122211 1 111223334455554 456899999999999888887765533
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.96 E-value=19 Score=38.65 Aligned_cols=146 Identities=10% Similarity=0.018 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHC----C------------------C
Q 010575 149 TMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVE----N------------------V 206 (507)
Q Consensus 149 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~------------------~ 206 (507)
.++..+.+.+..+.+.++...... ++..--.+..+|...|++++|...|++.-.. + .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 455556666666666665544433 3333345566667777777777777554210 0 0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHH
Q 010575 207 KPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTI----VPLNNALIDMYAKSGKIGKALQVFENMKNK--SVITWT 280 (507)
Q Consensus 207 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 280 (507)
..-..-|..++..+.+.+.++.+.++-....+...+.+ ...|..+...+...|++++|...+-.+... -.....
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr 975 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLL 975 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHH
Confidence 11123477788888888888888888777666542222 125677788888889999988888766543 235667
Q ss_pred HHHHHHHHcCChHHH
Q 010575 281 TMIAGLALHGLGREA 295 (507)
Q Consensus 281 ~l~~~~~~~~~~~~A 295 (507)
.|+..++..|..+.-
T Consensus 976 ~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHCCHHHH
T ss_pred HHHHHHHhCCChhhh
Confidence 777777777765543
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.11 E-value=3.1 Score=31.01 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 010575 291 LGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMID 355 (507)
Q Consensus 291 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (507)
+..+...-+..+....+.|++......+.+|.+.+|+..|.++|+.++.+.+ +....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4456667777777888999999999999999999999999999999987543 33556766664
No 264
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.03 E-value=3.5 Score=38.03 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hhCCCCChhHH
Q 010575 280 TTMIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKS----RYGIEPKIEQY 350 (507)
Q Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 350 (507)
..++..+...|++.+|+..+..+.... +.+...+..++.++...|+..+|++.|+.+.+ ..|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345666777788888887777776642 34667788888888888888888888877654 34777776553
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.10 E-value=4 Score=30.44 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 010575 58 LNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQ 119 (507)
Q Consensus 58 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 119 (507)
-+..+-++.+...++.|++......+++|.+.+|+..|.++|+-++.. ..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 345555555555566666666666666666666666666666665543 2223444554443
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.27 E-value=22 Score=32.52 Aligned_cols=291 Identities=12% Similarity=0.065 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccC---CC---ChhhHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHH----
Q 010575 113 VVAALIQMYASCKCIYDARKVFDELSLR---VW---NVAVWNTMVAGYAKVG-DLNNARALFELMTE---KNVISW---- 178 (507)
Q Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p---~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~---~~~~~~---- 178 (507)
....|...|.+.|+.++..+++.....- .| .......++..+.... ..+.-.++.....+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888887776544 11 2334556666665533 33333444433332 111222
Q ss_pred --HHHHHHHHhCCChhHHHHHHHHHhHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCchhHHH
Q 010575 179 --TTLIAGYAQMDQPNEAITLFRRMQVENVKPD-----EIAMLAALSACAQLGAVELGEWIHNYIEQYG--LNTIVPLNN 249 (507)
Q Consensus 179 --~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 249 (507)
.-++..|...|++.+|.+++..+.+.--..| ...+..-+..|...+++.++...+....... +.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2467788888888888888887766421212 1234444555666677777766666554321 212222221
Q ss_pred HH----HHHHH-hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 010575 250 AL----IDMYA-KSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMERARVKP---NEITFIAILSAC 321 (507)
Q Consensus 250 ~l----~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~ 321 (507)
.+ .-.+. ..+++..|...|-+.. ..|- +.| .| +...|..+....
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf-----------~~f~----------------~~~-~~~~~~~lkYlvL~aLl 232 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAF-----------EGFD----------------SVD-SVKALTSLKYMLLCKIM 232 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH-----------HHHT----------------TTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHH-----------hccc----------------ccc-cHHHHHHHHHHHHHHHH
Confidence 11 11223 3445555544443210 0010 111 01 112332222222
Q ss_pred hccCcHHHHHHHH-HHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 010575 322 CHVGLVELGRRYF-NIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM--PFEANAAIWGSLLAASNIYGDVELG 398 (507)
Q Consensus 322 ~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 398 (507)
. ++..+...++ ......+ ..|....+..++.+| +.+++.+...+++.. .+..|+.....+-..+.. --
T Consensus 233 ~--~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir 303 (394)
T 3txn_A 233 L--GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT-----ML 303 (394)
T ss_dssp T--TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----HH
T ss_pred c--CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HH
Confidence 2 2211111222 1211211 245555566666654 556777777777765 233444322111111100 01
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 399 ECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
...+.++. .|-..-.+..++..+.- ..+++...+-+|...|.
T Consensus 304 ~~~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 304 EQNLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 12222332 45555667777766543 67889999988876665
No 267
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.62 E-value=8.2 Score=26.96 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=36.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHH
Q 010575 152 AGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAM 213 (507)
Q Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 213 (507)
..+...|++++|..+.+...-||...|..|.. .+.|..+++...+..+..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34555666666666666666677777765543 46677777777666666655 3443333
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.33 E-value=11 Score=30.47 Aligned_cols=52 Identities=10% Similarity=0.061 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHh--ccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 393 GDVELGECALQHLI--KLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 393 g~~~~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
++...+..+|..+. +++-..+..|...+..+...|++.+|.++|+.-.+.+.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 33556666776663 35555566677777777777777777777766665544
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.89 E-value=9 Score=26.82 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=29.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCC
Q 010575 153 GYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVEN 205 (507)
Q Consensus 153 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 205 (507)
.+...|++++|..+.+...-||...|..|.. .+.|..+++...+..+..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445566666666666666666666655543 34555566666555555554
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.67 E-value=7.7 Score=33.12 Aligned_cols=56 Identities=7% Similarity=0.023 Sum_probs=34.0
Q ss_pred HHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCC
Q 010575 86 VVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVW 142 (507)
Q Consensus 86 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 142 (507)
+.+.|+++.++.....-++..+. |......|+..+|-.|+++.|.+-++...+..|
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 44556666666666666665433 555666666666666666666666666655544
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.62 E-value=11 Score=26.31 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|. -.+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHh
Confidence 45666666666665553 3333333455677889999999999999989999887664 4577888888888878877
Q ss_pred CCCCCCHHHHH
Q 010575 305 ARVKPNEITFI 315 (507)
Q Consensus 305 ~g~~p~~~~~~ 315 (507)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.87 E-value=12 Score=26.20 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010575 225 AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDMFSRMER 304 (507)
Q Consensus 225 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 304 (507)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665553 33333334556778899999999999999999998877644 466888888888877777
Q ss_pred CCCCCCHHHHH
Q 010575 305 ARVKPNEITFI 315 (507)
Q Consensus 305 ~g~~p~~~~~~ 315 (507)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.84 E-value=29 Score=30.55 Aligned_cols=168 Identities=11% Similarity=0.070 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREALDM----FSRMERARVKPNEITFIAILSACC 322 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~l~~~~~ 322 (507)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345667778888888888887643 23345556766655554 455556778888877777777665
Q ss_pred ccCcHH-HHHHHHHHhHH---hhCC--CCChhHHHHHHHHHhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---C
Q 010575 323 HVGLVE-LGRRYFNIMKS---RYGI--EPKIEQYGCMIDLLGRAGYLQEAEKLLRRMPFEANAAIWGSLLAASNIY---G 393 (507)
Q Consensus 323 ~~g~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g 393 (507)
....-+ .=.++.+++.+ +.|- .-++.....+...|.+.|++.+|...|-.-. ..+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCC
Confidence 422111 11233333321 1121 2367778888899999999999998876321 12455565555554444 4
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
...++--. ....+--|.-.|+...|..+++...
T Consensus 183 ~~~e~dlf--------------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEF--------------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHH--------------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44433222 1222335556788888888887664
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.98 E-value=31 Score=32.15 Aligned_cols=94 Identities=9% Similarity=-0.094 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHH--
Q 010575 247 LNNALIDMYAKSGKIGKALQVFENMKN------KSVITWTTMIAGLALHGLGREALDMFSRMER---ARVKPNEITFI-- 315 (507)
Q Consensus 247 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~g~~p~~~~~~-- 315 (507)
+...+...|.+.|+++.|.+.|.++.. .-+..+-.++..+...+++..+...+.+... .+..|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456788888899999999988888764 2235677778888888888888888887653 33333332211
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHh
Q 010575 316 AILSACCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 316 ~l~~~~~~~g~~~~a~~~~~~~~~~ 340 (507)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122345668888888888777665
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.39 E-value=23 Score=27.25 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=33.4
Q ss_pred HHHHHHHHhc--cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 398 GECALQHLIK--LEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 398 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
+..+|..+.. ++-..+..|...+..+...|++++|.++++.-.+.+.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5667777643 4555666777888888888888888888877765554
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.40 E-value=6.4 Score=36.79 Aligned_cols=96 Identities=8% Similarity=-0.070 Sum_probs=56.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhh-CCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC----CCCCCHHHHHH---
Q 010575 313 TFIAILSACCHVGLVELGRRYFNIMKSRY-GIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM----PFEANAAIWGS--- 384 (507)
Q Consensus 313 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~--- 384 (507)
+...+...|.+.|+++.|.+++.++.... +...-...+..++..+...+++..+...+.++ ...++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45567777777788888888887776542 22223456666777777777777777777665 11222222111
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHhcc
Q 010575 385 -LLAASNIYGDVELGECALQHLIKL 408 (507)
Q Consensus 385 -l~~~~~~~g~~~~A~~~~~~~~~~ 408 (507)
-+..+...+++..|-..|-.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111234556777776666666543
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.02 E-value=30 Score=26.97 Aligned_cols=47 Identities=9% Similarity=-0.055 Sum_probs=29.4
Q ss_pred HHHHHHHHh--ccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 398 GECALQHLI--KLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 398 A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
+..+|..+. +++-..+..|...+..+...|++.+|.++|+.-.+.+.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 445555553 34455556666777777777777777777766665554
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.45 E-value=36 Score=28.91 Aligned_cols=114 Identities=6% Similarity=-0.064 Sum_probs=58.4
Q ss_pred HHHHHHHccCChhHHHHHhccCCCCCcc---cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCccc--HHHHHHHHHcc
Q 010575 15 RFIDSCSSLGFSDYAYSIFTHKSKPDVY---LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYS--FPFVLKAVVKL 89 (507)
Q Consensus 15 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~ 89 (507)
..+...++.|+++.+..+++....++.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 4555667788988888888875543322 1123444556667654 4444455565554321 11233444455
Q ss_pred CCcHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhcCChHHHHHHHHh
Q 010575 90 STIELGREIHCQTVGTGLDSDVHV--VAALIQMYASCKCIYDARKVFDE 136 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 136 (507)
|+.+ +++.+.+.|..++... -...+...+..|+.+-+..+++.
T Consensus 83 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 83 GSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127 (285)
T ss_dssp TCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh
Confidence 6544 4444555565443211 11223344556776666555554
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=62.69 E-value=93 Score=28.45 Aligned_cols=153 Identities=11% Similarity=-0.009 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----CC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHH--
Q 010575 250 ALIDMYAKSGKIGKALQVFENMKN----KS-----VITWTTMIAGLALHGLGREALDMFSRMERA--RVKPNEITFIA-- 316 (507)
Q Consensus 250 ~l~~~~~~~~~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~-- 316 (507)
.|+..|...|++.+|.+++..+.+ .| ...+-.-+..|...+++.++...+...... .+.+++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777777777777766666543 11 134555677788889999988888776532 23244433221
Q ss_pred H--HHHHh-ccCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHh-----hCCCCCCHHHHH
Q 010575 317 I--LSACC-HVGLVELGRRYFNIMKSRYGIEPK-----IEQYGCMIDLLGRAGYLQEAEKLLR-----RMPFEANAAIWG 383 (507)
Q Consensus 317 l--~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~-----~~~~~~~~~~~~ 383 (507)
. ...+. ..+++..|...|-+..+.+.-.-+ ...|..+..... ++..+-..++. .. ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhcccccccc-CCccHHHHH
Confidence 1 22355 789999999888877654432221 223433333332 33222222221 11 245555566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Q 010575 384 SLLAASNIYGDVELGECALQHLI 406 (507)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~ 406 (507)
.++.+ ...+++.+...+++...
T Consensus 261 ~L~~a-~~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 261 SVAEA-SHKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHST
T ss_pred HHHHH-HHhCCHHHHHHHHHHHH
Confidence 66665 46678877777777653
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.74 E-value=31 Score=29.33 Aligned_cols=117 Identities=12% Similarity=-0.015 Sum_probs=56.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCcc---cHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHH--HHHHHHHH
Q 010575 46 TTIKALCQTDNPLNAVILYNKIQASALRPDNY---SFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVH--VVAALIQM 120 (507)
Q Consensus 46 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 120 (507)
+.+...++.|+.+....+ .+.|..++.. .-.+.+...+..|+.+ +++.+++.|..++.. .....+..
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 445556777877654444 4445444322 1123455556667654 444555666554321 11123344
Q ss_pred HHhcCChHHHHHHHHhcccC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 010575 121 YASCKCIYDARKVFDELSLR-VWNVAVWNTMVAGYAKVGDLNNARALFELMT 171 (507)
Q Consensus 121 ~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 171 (507)
.+..|+.+-+..+++.-... .++...+ +.+...+..|+.+-...+++.-.
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNECDFYGF-TAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTCC-BHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCcccC-CHHHHHHHhCCHHHHHHHHHhCC
Confidence 45567776666655542211 1121112 23344456677776666666544
No 281
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=59.89 E-value=66 Score=25.83 Aligned_cols=72 Identities=11% Similarity=-0.013 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCCCCCHH--HH-----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHHH
Q 010575 363 LQEAEKLLRRMPFEANAA--IW-----GSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESGK 434 (507)
Q Consensus 363 ~~~A~~~~~~~~~~~~~~--~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 434 (507)
++.|+.+|+.+...-+.. .. ...+..|.+.|.+++|.+++++..+..+.+...-.-|..+-.+...+...++
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lq 172 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQ 172 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHH
Confidence 678888888884332311 11 2234479999999999999999988887777777777766666665555554
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.24 E-value=34 Score=32.49 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh--hHH-HHHHHHHhhcCCHHHHHHHHhhC
Q 010575 312 ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI--EQY-GCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
..++.+++.|...+.++.|..+..+..--....++. ..| ..+...+.-.+++.+|.+.+..+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 456667777777777777777776653100000111 111 23345555667777777766654
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.69 E-value=48 Score=27.27 Aligned_cols=86 Identities=14% Similarity=0.009 Sum_probs=38.4
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCCCccc--HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhc
Q 010575 49 KALCQTDNPLNAVILYNKIQASALRPDNYS--FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHV--VAALIQMYASC 124 (507)
Q Consensus 49 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 124 (507)
...++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -...+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 334555666666666665555544443221 112333334455543 3334444554432211 11223334455
Q ss_pred CChHHHHHHHHhcc
Q 010575 125 KCIYDARKVFDELS 138 (507)
Q Consensus 125 g~~~~A~~~~~~~~ 138 (507)
|+.+-+..+++...
T Consensus 90 ~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 90 RSPTCLRALLDSAA 103 (241)
T ss_dssp TCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHcCC
Confidence 66665555555543
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.57 E-value=32 Score=28.36 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=31.8
Q ss_pred HHHHHHHHHh--ccCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010575 397 LGECALQHLI--KLEPHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGV 444 (507)
Q Consensus 397 ~A~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 444 (507)
.+..+|..+. +++-..+..|...+..+...|++.+|.++|+.-.+.+.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4456666664 34555566777777777777777777777777665544
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.41 E-value=52 Score=27.50 Aligned_cols=89 Identities=8% Similarity=-0.016 Sum_probs=49.1
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHc--CCCC----CcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 010575 47 TIKALCQTDNPLNAVILYNKIQAS--ALRP----DNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQM 120 (507)
Q Consensus 47 li~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (507)
-+..+....++++|..++++..+. ++++ +.......+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 466778888888888888876542 2222 1122222333333333333333444444 22 3345555566677
Q ss_pred HHhcCChHHHHHHHHhcc
Q 010575 121 YASCKCIYDARKVFDELS 138 (507)
Q Consensus 121 ~~~~g~~~~A~~~~~~~~ 138 (507)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 778888888888776543
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.31 E-value=71 Score=24.49 Aligned_cols=47 Identities=9% Similarity=-0.055 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHhcccC
Q 010575 94 LGREIHCQTVGTGLDS-DVHVVAALIQMYASCKCIYDARKVFDELSLR 140 (507)
Q Consensus 94 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 140 (507)
.+.++|..|...|+.- -...|......+...|++.+|.++|+.-.++
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3677777777776643 3456667777777778888887777766555
No 287
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.37 E-value=1.1e+02 Score=32.04 Aligned_cols=51 Identities=2% Similarity=-0.126 Sum_probs=28.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHhhC
Q 010575 317 ILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 317 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (507)
++..|...|.++-+.++. . ..+.++..-..+..+|...|++++|...|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~----~--~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G--WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G--GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHH----h--hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555566665544322 1 22333333334566677777777777777766
No 288
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=50.16 E-value=98 Score=24.95 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=42.1
Q ss_pred HHHHHHHH---HhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCCC
Q 010575 178 WTTLIAGY---AQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA-----VELGEWIHNYIEQYGLN 242 (507)
Q Consensus 178 ~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 242 (507)
+-.+|+++ .+-.+.+.|+-.+-+|++.| .|....-..++-+.-..|. +..|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34455665 45688999999999999999 7766666666666655553 23444555555555643
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.02 E-value=55 Score=25.95 Aligned_cols=16 Identities=6% Similarity=-0.008 Sum_probs=8.5
Q ss_pred HccCChhHHHHHhccC
Q 010575 21 SSLGFSDYAYSIFTHK 36 (507)
Q Consensus 21 ~~~g~~~~A~~~~~~~ 36 (507)
+..|+.+.+..+++..
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4455555555555543
No 290
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.72 E-value=47 Score=21.98 Aligned_cols=62 Identities=6% Similarity=0.119 Sum_probs=39.6
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHccC-CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 65 NKIQASALRPDNYSFPFVLKAVVKLS-TIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 65 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.++..+..|....++.+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34556676666544 34555555554 5566778888887776666777766777777766643
No 291
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=49.23 E-value=1.2e+02 Score=25.67 Aligned_cols=219 Identities=11% Similarity=0.015 Sum_probs=102.9
Q ss_pred CCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc----HHHHHHHHHHHHcCCCCcH
Q 010575 36 KSKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI----ELGREIHCQTVGTGLDSDV 111 (507)
Q Consensus 36 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~ 111 (507)
+..++...-...+.++.+.|. ..+...+..+.. .++...-...+.++.+.+.. .....++...... .++.
T Consensus 32 L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~ 105 (280)
T 1oyz_A 32 LDDHNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSA 105 (280)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCH
T ss_pred HHcCCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCH
Confidence 334554444445555555553 334555545444 24444444455556555532 2222333322112 3455
Q ss_pred HHHHHHHHHHHhcCC-----hHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010575 112 HVVAALIQMYASCKC-----IYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYA 186 (507)
Q Consensus 112 ~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 186 (507)
.+....+.++...|. .+.+...+..... .++...-...+.++...|+.+..-.+.+.+..++...-...+.++.
T Consensus 106 ~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~-d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 184 (280)
T 1oyz_A 106 CVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAIN 184 (280)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT-CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555666555441 2344444433332 2355555566666666666443334444445566554444444444
Q ss_pred hCC-ChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 010575 187 QMD-QPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKAL 265 (507)
Q Consensus 187 ~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 265 (507)
..+ ....+...+..+.. .++...-...+.++.+.|+......+...+.+ +++ ....+.++.+.|.. .+.
T Consensus 185 ~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~v--r~~a~~aL~~i~~~-~~~ 254 (280)
T 1oyz_A 185 INKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NTV--YDDIIEAAGELGDK-TLL 254 (280)
T ss_dssp HHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SSC--CHHHHHHHHHHCCG-GGH
T ss_pred hhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----ccH--HHHHHHHHHhcCch-hhh
Confidence 443 23455555555543 34555556666677777755444334333322 221 23345556666663 344
Q ss_pred HHHHhc
Q 010575 266 QVFENM 271 (507)
Q Consensus 266 ~~~~~~ 271 (507)
..+..+
T Consensus 255 ~~L~~~ 260 (280)
T 1oyz_A 255 PVLDTM 260 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.03 E-value=92 Score=29.63 Aligned_cols=120 Identities=12% Similarity=0.127 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcc------cH-HHHHHHHHccCCcHHHHHHHHHHHHcCCCCcH---
Q 010575 42 YLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNY------SF-PFVLKAVVKLSTIELGREIHCQTVGTGLDSDV--- 111 (507)
Q Consensus 42 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 111 (507)
..+|.+++.|...+.++.|..+..+..- +.+.. .| -.+.+.+.-.+++.+|.+.+....+.-+....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~g 308 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhh
Confidence 4577777777777777777777776531 11111 11 12345556677777777777776654322111
Q ss_pred ---HHH--HHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 112 ---HVV--AALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFEL 169 (507)
Q Consensus 112 ---~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 169 (507)
.++ ..++..+ .|++.+ ..+|.+-.-+ .....|..+..++ +.|++..-...++.
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~-r~lf~q~~l~-~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPE-LSFFHQSNMQ-KSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCC-HHHHTTTSCH-HHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhh--cCCCCC-hHHhhchhHH-HHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 111 2222222 366553 2223211000 0233466555554 66777665555544
No 293
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=48.81 E-value=1e+02 Score=28.28 Aligned_cols=145 Identities=11% Similarity=0.082 Sum_probs=66.6
Q ss_pred HHHHHHccCChhHHHHHhccCCCCCccc--HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCccc--HHHHHHHHHccCC
Q 010575 16 FIDSCSSLGFSDYAYSIFTHKSKPDVYL--YNTTIKALCQTDNPLNAVILYNKIQASALRPDNYS--FPFVLKAVVKLST 91 (507)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~ 91 (507)
.+...+..|+.+-+..+++....++... ..+.+...+..|+.+-+..++ +.|..++... -.+.+...+..|+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 4555567788888888887655443221 123344445566655444443 3343332211 1223444455566
Q ss_pred cHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhcCChHHHHHHHHhcccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 010575 92 IELGREIHCQTVGTGLDSDVHV--VAALIQMYASCKCIYDARKVFDELSLRVW-NVAVWNTMVAGYAKVGDLNNARALFE 168 (507)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~ 168 (507)
.+- .+.+++.|..++... -...+...+..|+.+-+..+++.-..... +... .+.+...+..|+.+-+.-+++
T Consensus 93 ~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~ 167 (437)
T 1n11_A 93 TNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG-FTPLHVAAKYGKVRVAELLLE 167 (437)
T ss_dssp HHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS-CCHHHHHHHTTCHHHHHHHHH
T ss_pred HHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCC-CCHHHHHHHcCCHHHHHHHHh
Confidence 543 344444554433210 11223344556676666666654322210 1111 122334445566555555554
Q ss_pred h
Q 010575 169 L 169 (507)
Q Consensus 169 ~ 169 (507)
.
T Consensus 168 ~ 168 (437)
T 1n11_A 168 R 168 (437)
T ss_dssp T
T ss_pred C
Confidence 4
No 294
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.16 E-value=1e+02 Score=25.17 Aligned_cols=51 Identities=12% Similarity=-0.043 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHcCCCCcHH-------HHHHHHHHHHhcCChHHHHHHHHhcccCCC
Q 010575 92 IELGREIHCQTVGTGLDSDVH-------VVAALIQMYASCKCIYDARKVFDELSLRVW 142 (507)
Q Consensus 92 ~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 142 (507)
++.|..+|+.+.+.-.-++.. +--..+-.|.+.|.+++|.+++++.....+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~ 145 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP 145 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence 457777777776653221111 112334467777888888888887776643
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.77 E-value=52 Score=24.96 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=39.6
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 65 NKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 65 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
+.+.+.|+.+++.-. .++..+...+..-.|.++++.+.+.++..+..|...-++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345566776665433 34455555566677788888887777666666666666777766643
No 296
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.38 E-value=99 Score=25.14 Aligned_cols=18 Identities=6% Similarity=0.126 Sum_probs=11.1
Q ss_pred HHccCChhHHHHHhccCC
Q 010575 20 CSSLGFSDYAYSIFTHKS 37 (507)
Q Consensus 20 ~~~~g~~~~A~~~~~~~~ 37 (507)
.++.|+++.+..+++...
T Consensus 16 A~~~g~~~~~~~Ll~~g~ 33 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGY 33 (240)
T ss_dssp HHHTTCHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHcCC
Confidence 355677777666666543
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.98 E-value=92 Score=26.01 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=39.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHhHC--CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 010575 181 LIAGYAQMDQPNEAITLFRRMQVE--NVKP----DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVPLNNALIDM 254 (507)
Q Consensus 181 li~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (507)
-++.+....++++|..++++..+. +.++ +.......+..-.....-..+..+.+.+.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 455666777777777776665431 1111 111112222222222222233333333322 3334444555566
Q ss_pred HHhcCCHHHHHHHHHh
Q 010575 255 YAKSGKIGKALQVFEN 270 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~~ 270 (507)
+.+.|+.++|..+|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 6666666666666543
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.76 E-value=85 Score=23.19 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCH
Q 010575 249 NALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGL--GREALDMFSRMERARVKPNE 311 (507)
Q Consensus 249 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~~ 311 (507)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567777788888888888888765522 233444444444432 34566677777766654433
No 299
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=45.82 E-value=78 Score=25.92 Aligned_cols=88 Identities=10% Similarity=-0.028 Sum_probs=44.2
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhcCChHHHHHHHHhcccC-CCChhhHHHHHHHHHhcC
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVH--VVAALIQMYASCKCIYDARKVFDELSLR-VWNVAVWNTMVAGYAKVG 158 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~ 158 (507)
.+...+..|+.+.+..+++.+.+.|..++.. .-...+...+..|+.+-+..+++.-... .++... .+.+...+..|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g-~t~l~~A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG-QTAAHLACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS-CCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC-CCHHHHHHHcC
Confidence 3444566788888877777766666544321 1112344455667776655555432111 111111 12233344556
Q ss_pred CHHHHHHHHHhc
Q 010575 159 DLNNARALFELM 170 (507)
Q Consensus 159 ~~~~A~~~~~~~ 170 (507)
+.+-+..+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 666655555554
No 300
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=45.43 E-value=52 Score=24.56 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=39.4
Q ss_pred HHHHcCCCCCcccHHHHHHHHHccC-CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 66 KIQASALRPDNYSFPFVLKAVVKLS-TIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 66 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
.+.+.|+.+++.-. .++..+...+ ..-.|.++++.+.+.++..+..|...-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35566776665443 3455555555 6777888888888877766776666666777666643
No 301
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=44.39 E-value=1.3e+02 Score=24.44 Aligned_cols=109 Identities=11% Similarity=-0.026 Sum_probs=50.3
Q ss_pred HHHHHccCChhHHHHHhccCCC----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcc---cHHHHHHHHHcc
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSK----PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNY---SFPFVLKAVVKL 89 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~ 89 (507)
+...++.|+++....+++.-.. ++..-++.|.. .+..|+.+ +++.+.+.|..++.. .++ .+...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHTE----IVEFLLQLGVPVNDKDDAGWS-PLHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCSCCCCTTSCC-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcHH----HHHHHHHhCCCCCCcCCCCCC-HHHHHHHc
Confidence 4555677888888877765322 33333333333 34455543 344444555444322 222 23333445
Q ss_pred CCcHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhcCChHHHHHHHH
Q 010575 90 STIELGREIHCQTVGTGLDSDVHV--VAALIQMYASCKCIYDARKVFD 135 (507)
Q Consensus 90 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 135 (507)
|+.+ +++.+.+.|..++... ....+...+..|+.+-+..+++
T Consensus 84 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 84 GXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127 (231)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 5544 3444455554432210 1122333445566555555544
No 302
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=44.20 E-value=65 Score=30.60 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCchHHH
Q 010575 394 DVELGECALQHLIKLEPHNSGNYAILSNIYAILGRWNESG 433 (507)
Q Consensus 394 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 433 (507)
....|...|.++..+.|++...|+.|+.+....|+.-+|.
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 3444555555555555555555555554444444444443
No 303
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.16 E-value=53 Score=25.08 Aligned_cols=62 Identities=8% Similarity=0.142 Sum_probs=42.5
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHccC-CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 65 NKIQASALRPDNYSFPFVLKAVVKLS-TIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 65 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
+.+.+.|+.+++.-. .++..+...+ ..-.|.++++.+.+.++..+..|...-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345667777766543 3455555555 6777888888888887777777766677777777754
No 304
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.99 E-value=59 Score=24.82 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=39.9
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 65 NKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 65 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
+.+.+.|+.+++.-. .++..+...+..-.|.++++.+.+.++..+..|....++.+...|-+
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345666766655433 34555556666778888888888877777777666667777777653
No 305
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=43.87 E-value=1e+02 Score=24.85 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=33.3
Q ss_pred HHHHHHHHH---hCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC
Q 010575 178 WTTLIAGYA---QMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLG 224 (507)
Q Consensus 178 ~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 224 (507)
+..+|+++. +-.+.+.|+-.+-+|++.|-.|....-..++-+.-..|
T Consensus 7 HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 7 FYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 344566654 56889999999999999987777666666666655444
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.10 E-value=79 Score=24.23 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCC
Q 010575 249 NALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGL--GREALDMFSRMERARVKPN 310 (507)
Q Consensus 249 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~ 310 (507)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567777778888888888888765522 233444444444322 3456666777766655443
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=41.00 E-value=82 Score=25.67 Aligned_cols=110 Identities=9% Similarity=-0.106 Sum_probs=49.4
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCccc--HHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHH---HHHHHHHHHhcC
Q 010575 51 LCQTDNPLNAVILYNKIQASALRPDNYS--FPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHV---VAALIQMYASCK 125 (507)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g 125 (507)
.++.|+.+....+ .+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..|
T Consensus 16 A~~~g~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 16 ATQYGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHcCChHHHHHH----HHcCCCcCCCCCCCCCHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 4566766544444 44454443221 12345555666765544 44445554332111 112334445567
Q ss_pred ChHHHHHHHHhcccC-CCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 126 CIYDARKVFDELSLR-VWNVAVWNTMVAGYAKVGDLNNARALFEL 169 (507)
Q Consensus 126 ~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 169 (507)
+.+-+..+++.-... .++.... +.+...+..|+.+-+..+++.
T Consensus 88 ~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 88 HLSMVVQLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhc
Confidence 766665555431111 1111111 233444555666665555554
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.73 E-value=2.9e+02 Score=28.88 Aligned_cols=127 Identities=10% Similarity=-0.008 Sum_probs=68.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010575 150 MVAGYAKVGDLNNARALFELMTEKNVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELG 229 (507)
Q Consensus 150 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 229 (507)
++..+...|..+-|.++...+.. ++..-..+..+|...|++++|...|++.- .|+..+...... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 55666667788777766655554 44444567788899999999999998764 232211100000 0000
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCh----hHHHHHHHHHHHcC
Q 010575 230 EWIHNYIEQYGLNTIVPLNNALIDMYAKSGKIGKALQVFENMK----NKSV----ITWTTMIAGLALHG 290 (507)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~ 290 (507)
..++.... .......-|..++..+-+.+-++.+.++-+... ..|. ..|+.+..+.+..|
T Consensus 884 ~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00110000 001122356677777777787777666554433 2233 35666666655443
No 309
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.53 E-value=1e+02 Score=26.37 Aligned_cols=210 Identities=12% Similarity=0.076 Sum_probs=97.1
Q ss_pred cCChhHHHHHhccC--CCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHH
Q 010575 23 LGFSDYAYSIFTHK--SKPDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHC 100 (507)
Q Consensus 23 ~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 100 (507)
..+..+..+++..- ..+|..-++. +...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+..
T Consensus 9 ~~~~~~v~~lL~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~--- 80 (285)
T 3kea_A 9 TWKSKQLKSFLSSKDTFKADVHGHSA-SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKI--- 80 (285)
T ss_dssp GCCHHHHHHHHHSTTTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHH---
T ss_pred hcCHHHHHHHHHhCCCCccCCCCCCH-HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHH---
Confidence 34445555555432 1233333333 33345566665444443 33433333222334555566677654443
Q ss_pred HHHHcCCCCcHHH--HHHHHHHHHhcCChHHHHHHHHhcccC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC-Chh
Q 010575 101 QTVGTGLDSDVHV--VAALIQMYASCKCIYDARKVFDELSLR-VWNVAVWNTMVAGYAKVGDLNNARALFELMTEK-NVI 176 (507)
Q Consensus 101 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~ 176 (507)
+++.|..++... -.+.+...+..|+.+-+..+++.-... ..+...+.+.+...+..|+.+-+.-+++.-... +..
T Consensus 81 -Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 159 (285)
T 3kea_A 81 -LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA 159 (285)
T ss_dssp -HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCS
T ss_pred -HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccc
Confidence 344555443211 112234445667777666666652211 112233345556666777877777776665432 221
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchh
Q 010575 177 SWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNTIVP 246 (507)
Q Consensus 177 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 246 (507)
.-.+.+...+..|+.+-+.-+++.-..-+.. +....+..+...+..|+.+ +.+.+.+.|..++..
T Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 160 ILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSA 224 (285)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTT
T ss_pred CCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCC
Confidence 2233344455677776665555543332211 1111111123334455544 444555667666554
No 310
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=40.49 E-value=1.9e+02 Score=25.53 Aligned_cols=89 Identities=10% Similarity=0.022 Sum_probs=44.7
Q ss_pred HHHHHHccCChhHHHHHhccCCCCC---cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCc
Q 010575 16 FIDSCSSLGFSDYAYSIFTHKSKPD---VYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTI 92 (507)
Q Consensus 16 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 92 (507)
.+...+..|+.+-+..+++....++ ..-++.| ...+..|+.+-+ +.+.+.|..++...-.+.+...+..|+.
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~ 97 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGCVDTA----KYLASVGEVHSLWHGQKPIHLAVMANKT 97 (364)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCCHHHH----HHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCCHHHH----HHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence 3444456688888777777644332 2223333 333445555433 3334444444432222344445566776
Q ss_pred HHHHHHHHHHHHcCCCC
Q 010575 93 ELGREIHCQTVGTGLDS 109 (507)
Q Consensus 93 ~~a~~~~~~~~~~~~~~ 109 (507)
+-+..+++.....|..+
T Consensus 98 ~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 98 DLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHhccccCCCH
Confidence 66666666544444433
No 311
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=40.48 E-value=1.3e+02 Score=24.55 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=44.2
Q ss_pred ChhHHHHHHHHHH---hCCChhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHcCCC
Q 010575 174 NVISWTTLIAGYA---QMDQPNEAITLFRRMQVENVKPDEIAMLAALSACAQLGA-----VELGEWIHNYIEQYGLN 242 (507)
Q Consensus 174 ~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 242 (507)
+...+..+|+++. +-.+.+.|+-++-+|++.|-.|....-..++-+.-..|. +..|...++.....|.+
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3334445666664 568899999999999999987777666666666655553 33445555555555543
No 312
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.31 E-value=1.1e+02 Score=22.59 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHh
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQ 202 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~ 202 (507)
+.++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555555555555555553
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=40.26 E-value=1.6e+02 Score=27.57 Aligned_cols=143 Identities=12% Similarity=-0.014 Sum_probs=82.8
Q ss_pred cCChhHHHHHhccCCCCCc-ccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHH
Q 010575 23 LGFSDYAYSIFTHKSKPDV-YLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQ 101 (507)
Q Consensus 23 ~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 101 (507)
..+.+-|.++..+.--|.. ..|..-...+...|++++|..+-..-.+ |+--++.|.+.+-..=...|...-.+.+|.-
T Consensus 342 l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~ 420 (494)
T 1bpo_A 342 LQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGI 420 (494)
T ss_dssp TCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 3566666666655443322 2344455666777888888877665543 4444555555554444455666667777777
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 010575 102 TVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNVAVWNTMVAGYAKVGDLNNARALFELMTEK 173 (507)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 173 (507)
+.+.| ..+..---.+++.-...|+.+-..+.+.+=+-. -..-...++ +..+..-|+.+|.+..-+
T Consensus 421 Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~KL~--~SEeLGDlv----k~~d~~LAl~IY~~a~~~ 485 (494)
T 1bpo_A 421 LLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLE--CSEELGDLV----KSVDPTLALSVYLRANVP 485 (494)
T ss_dssp HHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSC--CCHHHHHHH----HHHCSHHHHHHHHHHCCC
T ss_pred HhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcCCcc--ccHHhHhhh----hhcCHHHHHHHHHHcCCc
Confidence 77776 345555556677777777777777776653322 111122222 344666677777665543
No 314
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.67 E-value=85 Score=24.06 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHh
Q 010575 179 TTLIAGYAQMDQPNEAITLFRRMQ 202 (507)
Q Consensus 179 ~~li~~~~~~~~~~~a~~~~~~m~ 202 (507)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555656666666666666553
No 315
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=37.43 E-value=65 Score=31.98 Aligned_cols=64 Identities=19% Similarity=0.134 Sum_probs=49.7
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCc
Q 010575 363 LQEAEKLLRRMPFEANAAIWGSLLAASNIYGDVELGECALQHLIKLEPHNSGNYAILSNIYAILGRW 429 (507)
Q Consensus 363 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 429 (507)
.+.|.++.+.|+ ...............|++..|.++.+.++..+|+|..+...++++|.+.|.-
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 356666777774 2333444555667899999999999999999999999999999999887743
No 316
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.86 E-value=58 Score=27.27 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=25.3
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCccc-------HHHHHHHHH--ccCCcHHHHHHHHHH
Q 010575 51 LCQTDNPLNAVILYNKIQASALRPDNYS-------FPFVLKAVV--KLSTIELGREIHCQT 102 (507)
Q Consensus 51 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 102 (507)
.++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3455666666666665555554444222 223333321 455655555555443
No 317
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.71 E-value=67 Score=24.34 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 65 NKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 65 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
+.+.+.|+.+++.-. .++..+...+ .-.|.++++.+.+.++..+..|...-++.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 344556766665432 3444455555 667788888887777666666666666666666643
No 318
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=36.00 E-value=6.1 Score=28.76 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=32.1
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHH
Q 010575 43 LYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGRE 97 (507)
Q Consensus 43 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 97 (507)
.|.-.|...+.+++.+-|.++++...+.| +...|.+.+-.|...=+++-+++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 35555666666677777777777666644 55566666666666655555543
No 319
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.64 E-value=95 Score=24.05 Aligned_cols=69 Identities=10% Similarity=0.130 Sum_probs=45.8
Q ss_pred hHHHHHHHH-HHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCCh
Q 010575 58 LNAVILYNK-IQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGT--GLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 58 ~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
+.+++-+.+ +.+.|+.+++.- ..++..+...+..-.|.++++.+.+. ++..+..|.-.-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444443 455677776543 34566677777788888888888877 6666766666667777777754
No 320
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.73 E-value=1.9e+02 Score=23.83 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCC
Q 010575 293 REALDMFSRMERARVKPN-EITFIAILSACCHVGLVELGRRYFNIMKSRYGIEP 345 (507)
Q Consensus 293 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 345 (507)
+.+..+|..|...|+--. ...|......+...|++.+|..+|+.-++. +-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 466677777777766543 345666666777778888888888777765 5555
No 321
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.68 E-value=59 Score=22.59 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHH
Q 010575 259 GKIGKALQVFENMKNKSVITWTTMIAGLALHGLGREAL 296 (507)
Q Consensus 259 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 296 (507)
...+.|.++++.+.+++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35677888888888777778888888776666654443
No 322
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.73 E-value=50 Score=26.94 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=10.8
Q ss_pred HHHhhcCCHHHHHHHHhhC
Q 010575 355 DLLGRAGYLQEAEKLLRRM 373 (507)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~ 373 (507)
-.|.+.|.+++|.+++++.
T Consensus 122 ~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHH
Confidence 3455556666666666554
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.65 E-value=1.7e+02 Score=22.62 Aligned_cols=55 Identities=15% Similarity=-0.031 Sum_probs=35.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HhccCcHHHHHHHHHHhHHh
Q 010575 286 LALHGLGREALDMFSRMERARVKP--NEITFIAILS-A-----CCHVGLVELGRRYFNIMKSR 340 (507)
Q Consensus 286 ~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~~ 340 (507)
+...|++-+|-++|+..=.....+ ....|..||+ . ..+.|+...|..++.+....
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344578888888888776554444 3455566666 2 33567888888887777653
No 324
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.58 E-value=1.4e+02 Score=22.49 Aligned_cols=59 Identities=8% Similarity=0.078 Sum_probs=26.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 010575 302 MERARVKPNEITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 362 (507)
Q Consensus 302 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (507)
+.+.|++++..=. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 4445555544322 2333333334444555566655543 333344444444445554443
No 325
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.32 E-value=1.2e+02 Score=25.85 Aligned_cols=178 Identities=10% Similarity=0.029 Sum_probs=78.5
Q ss_pred HHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccC-CCChhhHHHHHHHHHhcCCHH
Q 010575 83 LKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLR-VWNVAVWNTMVAGYAKVGDLN 161 (507)
Q Consensus 83 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~ 161 (507)
+...+..|+.+-+..+ ++.|..++...-.+.+...+..|+.+-+..+++.-... .++...+ +.+...+..|+.+
T Consensus 35 L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-t~L~~A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGN-TALYYAVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC-cHHHHHHHcCCHH
Confidence 3444556666544433 34444333221223344455667776666666542211 1122222 2334445667777
Q ss_pred HHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHH
Q 010575 162 NARALFELMTEK---NVISWTTLIAGYAQMDQPNEAITLFRRMQVENVKPDEI-AMLAALSACAQLGAVELGEWIHNYIE 237 (507)
Q Consensus 162 ~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 237 (507)
-+.-+++.-..+ +...+.+.+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+-+..+++.-.
T Consensus 110 ~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 185 (285)
T 3kea_A 110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT 185 (285)
T ss_dssp HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence 776666653322 222222334444555655433 3333444222110 11233344456677776666665533
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010575 238 QYGLNTIVPLNNALIDMYAKSGKIGKALQVFEN 270 (507)
Q Consensus 238 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 270 (507)
..... +..-.+..+...+..|+.+-+.-+++.
T Consensus 186 d~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 186 STNTN-NSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp HTCTT-CCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred CCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 32211 111111122334455666655555544
No 326
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.98 E-value=1.8e+02 Score=25.84 Aligned_cols=15 Identities=0% Similarity=-0.201 Sum_probs=7.3
Q ss_pred HHhcCCHHHHHHHHH
Q 010575 255 YAKSGKIGKALQVFE 269 (507)
Q Consensus 255 ~~~~~~~~~A~~~~~ 269 (507)
.+..|+.+-+..+++
T Consensus 180 A~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 180 AMEFRNREALDLMMD 194 (364)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344455555554444
No 327
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=31.32 E-value=2.4e+02 Score=23.77 Aligned_cols=17 Identities=6% Similarity=-0.142 Sum_probs=6.1
Q ss_pred chhHHHHHHHHHHhcCC
Q 010575 244 IVPLNNALIDMYAKSGK 260 (507)
Q Consensus 244 ~~~~~~~l~~~~~~~~~ 260 (507)
+..+-...+.++...|+
T Consensus 141 ~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 141 STNVRRATAFAISVIND 157 (280)
T ss_dssp CHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33333334444444443
No 328
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.03 E-value=75 Score=22.06 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 010575 160 LNNARALFELMTEKNVISWTTLIAGYAQMDQ 190 (507)
Q Consensus 160 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 190 (507)
.+.|.++++.++.+++.+|..++.++...|+
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHcCc
Confidence 3344444444444444444444444444343
No 329
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.89 E-value=1.9e+02 Score=23.32 Aligned_cols=82 Identities=13% Similarity=-0.052 Sum_probs=37.7
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCcHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHhc
Q 010575 48 IKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLSTIELGREIHCQTVGTGLDSDV---HVVAALIQMYASC 124 (507)
Q Consensus 48 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 124 (507)
+...++.|+.+....+++.-...-..++..-.+. +...+..|+.+- ++.+.+.|..++. .-.+ .+...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWS-PLHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCC-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCC-HHHHHHHc
Confidence 4555667777777777665332111223322333 333345555443 3444455544332 1112 22333445
Q ss_pred CChHHHHHHHH
Q 010575 125 KCIYDARKVFD 135 (507)
Q Consensus 125 g~~~~A~~~~~ 135 (507)
|+.+-+..+++
T Consensus 84 ~~~~~v~~Ll~ 94 (231)
T 3aji_A 84 GXDEIVKALLV 94 (231)
T ss_dssp TCHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66655544444
No 330
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.80 E-value=73 Score=19.75 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 010575 57 PLNAVILYNKIQASALRPDNYSFPFVLKAV 86 (507)
Q Consensus 57 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 86 (507)
.++|...|.+|++..-.+...+|...++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 467888888887665455667788888776
No 331
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.16 E-value=2.2e+02 Score=23.03 Aligned_cols=55 Identities=5% Similarity=-0.082 Sum_probs=30.9
Q ss_pred CChhHHHHHHHHHhHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 010575 189 DQPNEAITLFRRMQVENVKP-DEIAMLAALSACAQLGAVELGEWIHNYIEQYGLNT 243 (507)
Q Consensus 189 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 243 (507)
+....+..+|..|...|+-. -...|......+...|++.+|..++..-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33456666666666555322 23445555555566666666666666666555555
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.91 E-value=80 Score=23.33 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=26.5
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC 126 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (507)
++..+...+..-.|.++++.+.+.++..+..|....++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444455556666777777666655565555555666666554
No 333
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.15 E-value=2e+02 Score=23.22 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=13.1
Q ss_pred HHHHHccCChhHHHHHhccCCC
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSK 38 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~ 38 (507)
+...++.|+.+-+..+++....
T Consensus 15 L~~A~~~g~~~~v~~Ll~~g~~ 36 (237)
T 3b7b_A 15 LHAAAEAGHVDICHMLVQAGAN 36 (237)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHcCcHHHHHHHHHcCCC
Confidence 4444566777766666665433
No 334
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=29.08 E-value=75 Score=23.81 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=27.4
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKC 126 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 126 (507)
++..+...+..-.|.++++.+.+.++..+..|...-++.+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 445555555566677777777666666666655555666666654
No 335
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.61 E-value=1.8e+02 Score=23.61 Aligned_cols=21 Identities=5% Similarity=-0.057 Sum_probs=12.4
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 010575 218 SACAQLGAVELGEWIHNYIEQ 238 (507)
Q Consensus 218 ~~~~~~~~~~~a~~~~~~~~~ 238 (507)
......|+.+.+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334556666666666666554
No 336
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.31 E-value=2.3e+02 Score=22.80 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=28.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 325 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 325 (507)
.+..+.+.|+-++-+|++.| .|....-..++.+....|
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 35678999999999999998 766666566666655554
No 337
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=28.11 E-value=1.8e+02 Score=25.97 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=38.2
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHH
Q 010575 410 PHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQM 486 (507)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 486 (507)
-.+...|..++..+.+.+++.||++.+.+..+- +......-+++|||..+-+|.+++
T Consensus 293 n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V--------------------i~~YNY~reDeEIYKEf~eIAnel 349 (472)
T 3re2_A 293 DHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV--------------------AGKYNYSKDDEEMYKEFHEIANDL 349 (472)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------HTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred cCCccchhhhhhhhhhcchHHHHHHHHHHHHHH--------------------HHHcCCCccHHHHHHHHHHHHHHH
Confidence 345677888898999999999999999776421 000112346678888776655543
No 338
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.87 E-value=2.5e+02 Score=22.89 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=30.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 325 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 325 (507)
.+.++.+.|+-++-+|++.|-.|....-..++.+....|
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 356789999999999999998877766666666665544
No 339
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.31 E-value=2e+02 Score=21.73 Aligned_cols=42 Identities=7% Similarity=0.137 Sum_probs=18.6
Q ss_pred HHhccCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 010575 320 ACCHVGLVELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 362 (507)
Q Consensus 320 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (507)
.+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 35 ~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 35 VLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred HHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 333333444555555555443 333344443344444444443
No 340
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.62 E-value=1.8e+02 Score=21.48 Aligned_cols=59 Identities=8% Similarity=0.029 Sum_probs=33.4
Q ss_pred HhHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010575 201 MQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 260 (507)
Q Consensus 201 m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 260 (507)
+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 455666665443 34455555554 556677777777776655555554445555555443
No 341
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.42 E-value=1e+02 Score=19.03 Aligned_cols=23 Identities=13% Similarity=-0.093 Sum_probs=12.9
Q ss_pred HHcCCchHHHHHHHHHHhCCCcc
Q 010575 424 AILGRWNESGKIRKVMRDMGVKK 446 (507)
Q Consensus 424 ~~~g~~~~A~~~~~~~~~~~~~~ 446 (507)
...|+.+.|+..+-.|...+..+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCC
Confidence 34466666666666665444433
No 342
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.40 E-value=2.5e+02 Score=22.55 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=29.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010575 287 ALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 325 (507)
Q Consensus 287 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 325 (507)
.+..+.+.|+-++-+|++.|-.|....-..++.+....|
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 356789999999999999988777666666666655444
No 343
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=26.12 E-value=2e+02 Score=26.32 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=39.4
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHH
Q 010575 410 PHNSGNYAILSNIYAILGRWNESGKIRKVMRDMGVKKMPGCSYIEVSKRVHEFVAGDTSHPDFDRLYQILCKINGQ 485 (507)
Q Consensus 410 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 485 (507)
-.+...|..++..+.+.+++.+|++.+.+.-+- +......-+++|||..+-+|.++
T Consensus 315 n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V--------------------i~~YNY~reDeEIYKEf~eIAne 370 (550)
T 3u84_A 315 DEHIYPYMYLAGYHCRNRNVREALQAWADTATV--------------------IQDYNYCREDEEIYKEFFEVAND 370 (550)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------HTTSCCCGGGHHHHHHHHHHHHT
T ss_pred cCCccceeecchhhhhcchHHHHHHHHHHHHHH--------------------HHHcCCCcchHHHHHHHHHHHHH
Confidence 446777889999999999999999999876421 00011234678898887666554
No 344
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.64 E-value=2e+02 Score=21.83 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=37.6
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 010575 199 RRMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSGK 260 (507)
Q Consensus 199 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 260 (507)
+.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 34556777666543 34555555555 566678888888777666665555555666666554
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.31 E-value=1.8e+02 Score=22.56 Aligned_cols=52 Identities=6% Similarity=-0.063 Sum_probs=32.7
Q ss_pred cCCCchHHHHHHHHHHHcCCCC--CcccHHHHHH-H-----HHccCCcHHHHHHHHHHHH
Q 010575 53 QTDNPLNAVILYNKIQASALRP--DNYSFPFVLK-A-----VVKLSTIELGREIHCQTVG 104 (507)
Q Consensus 53 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 104 (507)
..|++-+|-++|+..-...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3478888888888776643334 3444555555 2 2356777777777777655
No 346
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=25.30 E-value=1.5e+02 Score=19.56 Aligned_cols=38 Identities=5% Similarity=0.062 Sum_probs=24.8
Q ss_pred HHhccCCC--CCcccHHHHHHHHHcCCCchHHHHHHHHHH
Q 010575 31 SIFTHKSK--PDVYLYNTTIKALCQTDNPLNAVILYNKIQ 68 (507)
Q Consensus 31 ~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 68 (507)
.++.+++. |++.||+-+...+-+..-..++..+.+++.
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45666664 778888877776666655566666665543
No 347
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.85 E-value=2.4e+02 Score=23.58 Aligned_cols=50 Identities=16% Similarity=-0.020 Sum_probs=25.4
Q ss_pred HcCCCchHHHHHHHHHHHcCCCC-------CcccHHHHHHHHH--ccCCcHHHHHHHHH
Q 010575 52 CQTDNPLNAVILYNKIQASALRP-------DNYSFPFVLKAVV--KLSTIELGREIHCQ 101 (507)
Q Consensus 52 ~~~~~~~~a~~~~~~m~~~~~~p-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~ 101 (507)
++.|+.+....+++...+.+... +..-++.|..++. +.|+.+-+..+++.
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 55667766666666655544322 2223334444443 24666655555554
No 348
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.80 E-value=3.9e+02 Score=24.23 Aligned_cols=296 Identities=14% Similarity=0.127 Sum_probs=136.6
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhcCChHHHHHHHHhcccCC-CChhhHHHHHHHHHhcC
Q 010575 82 VLKAVVKLSTIELGREIHCQTVGTGLDSDVH--VVAALIQMYASCKCIYDARKVFDELSLRV-WNVAVWNTMVAGYAKVG 158 (507)
Q Consensus 82 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~li~~~~~~~ 158 (507)
.+...+..|+.+-+.. +++.|..++.. .....+...+..|+.+-+..+++.-.... .+.. -.+.+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD-DQTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT-SCCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHCC
Confidence 4555567777665544 44556555432 11234455667788887777776532221 1211 123455566778
Q ss_pred CHHHHHHHHHhcCCCC---hhHHHHHHHHHHhCCChhHHHHHHHHHhHCCCCC---CHHHHHHHHHHHhccCCHHHHHHH
Q 010575 159 DLNNARALFELMTEKN---VISWTTLIAGYAQMDQPNEAITLFRRMQVENVKP---DEIAMLAALSACAQLGAVELGEWI 232 (507)
Q Consensus 159 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~ 232 (507)
+.+-+.-+++.-..++ ...++ .+...+..|+.+-+..+++ .+..+ +.... +.+...+..|+.+.+..
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~- 164 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAKYGKVRVAEL- 164 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHHTTCHHHHHH-
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHHcCCHHHHHH-
Confidence 8887777777654432 22222 2334455666655544443 33222 11111 22333455666654443
Q ss_pred HHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 010575 233 HNYIEQYGLNTIVP--LNNALIDMYAKSGKIGKALQVFENMKNKSV---ITWTTMIAGLALHGLGREALDMFSRMERARV 307 (507)
Q Consensus 233 ~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 307 (507)
+.+.|..++.. ...+.+...+..|+.+-+..+++.-..++. ..++. +...+..|+.+-+ +.+.+.|.
T Consensus 165 ---Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~ 236 (437)
T 1n11_A 165 ---LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVA----RSLLQYGG 236 (437)
T ss_dssp ---HHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHH----HHHHHTTC
T ss_pred ---HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHH----HHHHHcCC
Confidence 44445433321 011234445667777766666654433221 11222 2333455664433 34444554
Q ss_pred CCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhhCCCCCh---hHHHHHHHHHhhcCCHHHHHHHHhhC-CC-CCCH
Q 010575 308 KPNE---ITFIAILSACCHVGLVELGRRYFNIMKSRYGIEPKI---EQYGCMIDLLGRAGYLQEAEKLLRRM-PF-EANA 379 (507)
Q Consensus 308 ~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~ 379 (507)
.++. ...+. +...+..|+.+-...+ .+. +..++. ...+. +...++.|+.+-+..+++.- .+ ..+.
T Consensus 237 ~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~-~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 309 (437)
T 1n11_A 237 SANAESVQGVTP-LHLAAQEGHAEMVALL----LSK-QANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKHGVMVDATTR 309 (437)
T ss_dssp CTTCCCTTCCCH-HHHHHHTTCHHHHHHH----HTT-TCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHHTCCTTCCCS
T ss_pred CCCCCCCCCCCH-HHHHHHCCCHHHHHHH----Hhc-CCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCccCCCCCC
Confidence 4332 11222 2333445665544333 332 333321 11222 33344667777666666543 11 1121
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010575 380 AIWGSLLAASNIYGDVELGECALQHL 405 (507)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (507)
...+.|. .....|+.+-+..+++.-
T Consensus 310 ~g~t~L~-~A~~~g~~~~v~~Ll~~g 334 (437)
T 1n11_A 310 MGYTPLH-VASHYGNIKLVKFLLQHQ 334 (437)
T ss_dssp SCCCHHH-HHHHSSCSHHHHHHHHTT
T ss_pred CCCCHHH-HHHHcCcHHHHHHHHhcC
Confidence 1122232 234567766655555543
No 349
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.79 E-value=89 Score=21.42 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCCchHHHHHHHH
Q 010575 416 YAILSNIYAILGRWNESGKIRKV 438 (507)
Q Consensus 416 ~~~l~~~~~~~g~~~~A~~~~~~ 438 (507)
+...++.+.+.|+|++|++..++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 34455555666666666554444
No 350
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.59 E-value=2.5e+02 Score=21.93 Aligned_cols=90 Identities=10% Similarity=0.039 Sum_probs=48.2
Q ss_pred HccCChhHHHHHhccCCC-CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCccc---HHHHHHHHH-ccCCcHHH
Q 010575 21 SSLGFSDYAYSIFTHKSK-PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYS---FPFVLKAVV-KLSTIELG 95 (507)
Q Consensus 21 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~l~~~~~-~~~~~~~a 95 (507)
++.|+++....++..-.. .+...-.+.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++. ...+....
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~ 93 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGT 93 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhH
Confidence 566888887777765432 1101112344455666766666677777777776665432 223333222 12233444
Q ss_pred HHHHHHHHHcCCCCc
Q 010575 96 REIHCQTVGTGLDSD 110 (507)
Q Consensus 96 ~~~~~~~~~~~~~~~ 110 (507)
.++.+.+++.|..++
T Consensus 94 ~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 94 TELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHCCCCCC
Confidence 556666666665544
No 351
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=24.51 E-value=3.5e+02 Score=23.48 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=73.6
Q ss_pred CchHHHHHHHHHHHcCCCCCccc--HH------HHHHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 56 NPLNAVILYNKIQASALRPDNYS--FP------FVLKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 56 ~~~~a~~~~~~m~~~~~~p~~~~--~~------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
+-++|.-+|..+......++... .. ..+..+.+..+ -++++.+.+.|+.|...++.-++..+.+.=.+
T Consensus 130 ~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 205 (310)
T 3hzj_A 130 PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQL----PDLHSHFSDLNLEAHMYASQWFLTLFTAKFPL 205 (310)
T ss_dssp CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCH
T ss_pred CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhC----hHHHHHHHHcCCChHHHHHHHHHHHHhccCCH
Confidence 45678888877764321222111 11 11222222222 24666777788888888888888888887788
Q ss_pred HHHHHHHHhcccCCCChhhHHHH--H----HHHHhcCCHHHHHHHHH-hcCC--CChhHHHHHHHHHHhC
Q 010575 128 YDARKVFDELSLRVWNVAVWNTM--V----AGYAKVGDLNNARALFE-LMTE--KNVISWTTLIAGYAQM 188 (507)
Q Consensus 128 ~~A~~~~~~~~~~~p~~~~~~~l--i----~~~~~~~~~~~A~~~~~-~~~~--~~~~~~~~li~~~~~~ 188 (507)
+.+..+++.+...++....+.++ + .... ..+.++....|. .++. ++...-..++......
T Consensus 206 ~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll-~~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 206 CMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLL-QADFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHH-TCCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 99999999887776654433222 1 1122 348888888886 4442 2233334455444433
No 352
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.19 E-value=3e+02 Score=22.57 Aligned_cols=25 Identities=12% Similarity=-0.040 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhcC-CHHHHHHHHhhC
Q 010575 349 QYGCMIDLLGRAG-YLQEAEKLLRRM 373 (507)
Q Consensus 349 ~~~~l~~~~~~~g-~~~~A~~~~~~~ 373 (507)
....++..+.+.| .++.+..+++..
T Consensus 181 ~k~K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 181 REQKVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 3455666666666 344444455444
No 353
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.13 E-value=99 Score=23.14 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccHHHHHHHHHccC
Q 010575 45 NTTIKALCQTDNPLNAVILYNKIQASALRPDNYSFPFVLKAVVKLS 90 (507)
Q Consensus 45 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 90 (507)
..++..+...+.+-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3456666666667778888888877654445555444444444444
No 354
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.10 E-value=1.3e+02 Score=22.04 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=28.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010575 282 MIAGLALHGLGREALDMFSRMERARVKPNEITFIAILSACCHVG 325 (507)
Q Consensus 282 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 325 (507)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44555555666677777777777666666666666666666555
No 355
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.81 E-value=3.6e+02 Score=23.48 Aligned_cols=57 Identities=9% Similarity=0.056 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCh--hHHHHHHHHHHhCCCh--hHHHHHHHHHhH
Q 010575 147 WNTMVAGYAKVGDLNNARALFELMTEKNV--ISWTTLIAGYAQMDQP--NEAITLFRRMQV 203 (507)
Q Consensus 147 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~--~~a~~~~~~m~~ 203 (507)
...++.-|...|+.++|...++++..|.- .....++......++. +.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 45778888899999999999999876642 2233444444444432 334456666653
No 356
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.81 E-value=2.2e+02 Score=21.90 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=36.1
Q ss_pred HhHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCC
Q 010575 201 MQVENVKPDEIAMLAALSACAQLGAVELGEWIHNYIEQY--GLNTIVPLNNALIDMYAKSGK 260 (507)
Q Consensus 201 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 260 (507)
+.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34456666543 345566666666666777777777766 555555555555666776664
No 357
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.13 E-value=3.8e+02 Score=23.47 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=83.7
Q ss_pred CchHHHHHHHHHHHc-C----CCCCcccHHHH---HHHHHccCCcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 010575 56 NPLNAVILYNKIQAS-A----LRPDNYSFPFV---LKAVVKLSTIELGREIHCQTVGTGLDSDVHVVAALIQMYASCKCI 127 (507)
Q Consensus 56 ~~~~a~~~~~~m~~~-~----~~p~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 127 (507)
+-++|.-+|..+... + ..|+....... +..+.+.-+ -++++.+.+.|+.|...++.-++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 457788888887643 2 33443322221 222222222 25677778889999888888889888888889
Q ss_pred HHHHHHHHhcccCCCChhhHHHH--H----HHHHhcCCHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCCh
Q 010575 128 YDARKVFDELSLRVWNVAVWNTM--V----AGYAKVGDLNNARALFEL-MTEKNVISWTTLIAGYAQMDQP 191 (507)
Q Consensus 128 ~~A~~~~~~~~~~~p~~~~~~~l--i----~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~ 191 (507)
+.+..+++.+...++....+-++ + ....+..+.++....+.. .+..+......++.......-.
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~s 310 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDIA 310 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCch
Confidence 99999999988776654433322 2 122335689999999987 4445555556666555555443
No 358
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=22.20 E-value=2.7e+02 Score=24.66 Aligned_cols=78 Identities=4% Similarity=0.017 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhcccCCCCh---hhH--HHHHH----HHHhcCCHHHHHHHH
Q 010575 97 EIHCQTVGTGLDSDVHVVAALIQMYASCKCIYDARKVFDELSLRVWNV---AVW--NTMVA----GYAKVGDLNNARALF 167 (507)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~--~~li~----~~~~~~~~~~A~~~~ 167 (507)
++++.+.+.|+.|...++.-++..+.+.=.++.+..+++.+...++.. ..+ .+++. ......++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 566777788999888888888888988888999999999998875432 222 22222 223468999999999
Q ss_pred HhcCCCC
Q 010575 168 ELMTEKN 174 (507)
Q Consensus 168 ~~~~~~~ 174 (507)
+.++..+
T Consensus 310 ~~~p~~~ 316 (345)
T 2qfz_A 310 QNLPTAH 316 (345)
T ss_dssp TSCSCTT
T ss_pred HcCCCcC
Confidence 9887653
No 359
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.16 E-value=2.1e+02 Score=21.43 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 010575 327 VELGRRYFNIMKSRYGIEPKIEQYGCMIDLLGRAGY 362 (507)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (507)
.-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 33 h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKT-ASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCc
Confidence 33455555555443 333344443334444444443
No 360
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.71 E-value=6.2e+02 Score=25.01 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=14.2
Q ss_pred HHHHHHHccCCcHHHHHHHHHH
Q 010575 81 FVLKAVVKLSTIELGREIHCQT 102 (507)
Q Consensus 81 ~l~~~~~~~~~~~~a~~~~~~~ 102 (507)
.+|-.|.++|++++|.++.++.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~ 178 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVEN 178 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHh
Confidence 3555566777777777766544
No 361
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.52 E-value=2.7e+02 Score=20.76 Aligned_cols=110 Identities=8% Similarity=-0.059 Sum_probs=51.6
Q ss_pred HHHHHccCChhHHHHHhccCCC----CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCcccH--HHHHHHHHccC
Q 010575 17 IDSCSSLGFSDYAYSIFTHKSK----PDVYLYNTTIKALCQTDNPLNAVILYNKIQASALRPDNYSF--PFVLKAVVKLS 90 (507)
Q Consensus 17 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~ 90 (507)
+...++.|+.+.+..+++.... .+..-++. +...+..|+.+ +++.+.+.|..++.... .+.+...+..|
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 86 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP-LHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNACSYG 86 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCH-HHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence 3444667888888888875331 22222233 34445566643 44445555655543321 12333344555
Q ss_pred CcHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhcCChHHHHHHHH
Q 010575 91 TIELGREIHCQTVGTGLDSDVHV--VAALIQMYASCKCIYDARKVFD 135 (507)
Q Consensus 91 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 135 (507)
+.+ +.+.+.+.|..++... -...+...+..|+.+-+..+++
T Consensus 87 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 129 (165)
T 3twr_A 87 HYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129 (165)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 554 3344455554443211 0112333344555554444443
No 362
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=20.46 E-value=4.9e+02 Score=23.72 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 010575 415 NYAILSNIYAILGRWNESGKIRKVMR 440 (507)
Q Consensus 415 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 440 (507)
.+...+..+...|+++.|.++++.++
T Consensus 338 ~~~eYA~lLA~qG~l~~A~~yL~~lp 363 (399)
T 2pm7_A 338 KFLEFINLTTSTGNFELATEFLNSLP 363 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 45577888899999999999998764
No 363
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=20.40 E-value=76 Score=21.64 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHHHHHHhcCcccCCCc
Q 010575 471 DFDRLYQILCKINGQMKFAEHLQNEFS 497 (507)
Q Consensus 471 ~~~~~~~~l~~~~~~~~~~g~~~~~~~ 497 (507)
+..++...+++..++++.-|+.||.-+
T Consensus 14 dlirIl~~ieekinELk~dG~ePDIiL 40 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPDIIL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 456788889999999999999998644
No 364
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.10 E-value=1.9e+02 Score=18.82 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=32.8
Q ss_pred HHhHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 010575 200 RMQVENVKPDEIAMLAALSACAQLG-AVELGEWIHNYIEQYGLNTIVPLNNALIDMYAKSG 259 (507)
Q Consensus 200 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 259 (507)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+...|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3555666665543 34555555543 44456667777766655555555555555555554
Done!