Query 010576
Match_columns 507
No_of_seqs 245 out of 628
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 09:47:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rzv_A STAM-binding protein; u 100.0 1.4E-47 4.6E-52 370.4 13.2 169 332-507 41-211 (211)
2 2znr_A AMSH-like protease; met 100.0 1.8E-46 6.2E-51 354.7 12.5 169 332-507 8-178 (178)
3 4b4t_V 26S proteasome regulato 99.9 4.6E-28 1.6E-32 246.5 12.8 130 332-464 24-164 (306)
4 2og4_A PRE-mRNA-splicing facto 99.9 1.8E-28 6.1E-33 240.6 4.0 141 332-477 37-189 (254)
5 2xze_A STAM-binding protein; h 99.9 4.9E-27 1.7E-31 215.2 11.6 107 6-112 14-121 (146)
6 2p8r_A PRP8, PRE-mRNA-splicing 99.9 8.6E-27 2.9E-31 230.8 4.5 138 332-477 38-191 (273)
7 2a9u_A Ubiquitin carboxyl-term 99.9 1.7E-24 5.8E-29 197.6 9.1 95 17-112 27-123 (144)
8 2kks_A Uncharacterized protein 99.8 6.4E-21 2.2E-25 173.9 13.8 119 334-459 1-125 (146)
9 2kcq_A MOV34/MPN/PAD-1 family; 99.8 4.9E-21 1.7E-25 176.0 10.0 119 335-460 1-128 (153)
10 2o95_A 26S proteasome non-ATPa 99.7 3.4E-17 1.2E-21 154.8 12.8 127 332-463 7-146 (187)
11 1oi0_A AF2198, hypothetical pr 99.7 4.8E-17 1.6E-21 144.3 9.3 107 334-457 3-111 (124)
12 4e0q_A COP9 signalosome comple 99.6 1.9E-15 6.5E-20 137.6 10.7 114 332-449 5-127 (141)
13 3sbg_A PRE-mRNA-splicing facto 99.6 5.9E-16 2E-20 163.2 7.3 130 332-468 348-485 (565)
14 4b4t_U RPN8, 26S proteasome re 99.0 2.3E-09 7.8E-14 110.3 13.4 123 332-458 5-140 (338)
15 2cpt_A SKD1 protein, vacuolar 96.7 0.0064 2.2E-07 53.3 8.6 72 27-102 13-84 (117)
16 4a5x_A MITD1, MIT domain-conta 96.5 0.0096 3.3E-07 49.4 8.3 69 30-103 14-82 (86)
17 1wfd_A Hypothetical protein 15 96.4 0.014 4.9E-07 48.9 9.0 72 28-104 11-82 (93)
18 2v6x_A Vacuolar protein sortin 96.2 0.019 6.4E-07 47.1 8.3 73 26-103 7-79 (85)
19 2w2u_A Hypothetical P60 katani 95.9 0.011 3.9E-07 48.6 5.7 72 24-100 11-82 (83)
20 2v6y_A AAA family ATPase, P60 95.6 0.017 5.7E-07 47.5 5.6 69 28-101 7-75 (83)
21 2ymb_A MITD1, MIT domain-conta 94.3 0.0075 2.6E-07 59.6 0.0 71 28-103 19-89 (257)
22 2qlc_A DNA repair protein RADC 92.2 0.51 1.7E-05 41.6 8.4 84 338-427 7-91 (126)
23 2zan_A Vacuolar protein sortin 84.7 0.18 6.2E-06 52.8 0.0 74 27-104 6-79 (444)
24 2rpa_A Katanin P60 ATPase-cont 44.2 65 0.0022 25.9 6.8 62 32-98 12-73 (78)
25 1a17_A Serine/threonine protei 27.2 98 0.0034 25.0 5.6 37 25-61 6-42 (166)
26 1wol_A ST0689, 122AA long cons 24.5 1.2E+02 0.004 25.4 5.6 31 25-55 4-34 (122)
27 3n71_A Histone lysine methyltr 22.5 1.9E+02 0.0063 30.4 7.8 43 31-73 392-435 (490)
28 2hsb_A Hypothetical UPF0332 pr 22.5 1.6E+02 0.0055 24.4 6.1 27 25-51 5-31 (126)
29 1ufb_A TT1696 protein; structu 22.2 1.3E+02 0.0044 25.1 5.4 32 25-56 4-35 (127)
30 2xev_A YBGF; tetratricopeptide 22.1 2.5E+02 0.0084 21.6 6.9 55 31-104 75-129 (129)
31 2xcb_A PCRH, regulatory protei 21.0 2.3E+02 0.0078 22.9 6.7 27 35-61 55-81 (142)
32 1elr_A TPR2A-domain of HOP; HO 20.8 1.4E+02 0.0048 22.6 5.1 31 31-61 3-33 (131)
33 3rkv_A Putative peptidylprolyl 20.4 1.2E+02 0.0041 25.1 4.9 62 32-107 97-158 (162)
34 3sz7_A HSC70 cochaperone (SGT) 20.1 3.2E+02 0.011 22.4 7.6 53 32-92 79-133 (164)
No 1
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=100.00 E-value=1.4e-47 Score=370.37 Aligned_cols=169 Identities=46% Similarity=0.841 Sum_probs=159.8
Q ss_pred CeEEEeCHHHHHHHHHHHhhcCCCCcceEEEecceeeCCEEEEEEEEecCCCCCCCC--cCCHHHHHHHhhhCCCcceEE
Q 010576 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDS--ATNEEEIFEVQDKRSLFPLGW 409 (507)
Q Consensus 332 ~~~V~I~~~~l~k~L~hA~~nt~~~~EvcGlL~G~~~~~~l~It~~~iP~q~~t~d~--~~~eeei~~~~~~~~l~~VGW 409 (507)
++.|.||.+++.+||.||+.++.+++|+||+|+|+..++.++|+++|+|+|.+++++ ..+++++|++++.+|+.+|||
T Consensus 41 lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~~~~~~~l~~vGW 120 (211)
T 3rzv_A 41 LRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGW 120 (211)
T ss_dssp BCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHHHHhhCCCEEEEE
Confidence 899999999999999999999866799999999999999999999999999888877 677888999999999999999
Q ss_pred EcCCCCCCCCCCHHHHHhhhhhhccCCCeEEEEEcCCCCCCceeEEEecCCCCchhhhccccCCCcCCCCCCCCCCCccc
Q 010576 410 IHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKP 489 (507)
Q Consensus 410 yHSHPt~t~fpSs~DL~tq~~YQ~m~pe~IaIV~dP~~~~~~~gaFrLt~p~gm~~i~~c~~~gFhph~~~~~~~~~y~~ 489 (507)
|||||+++||||++||+||++||.|+|++|+|||||.+. ++|||||| |+||+.|.+|+++|||||++ +++||+.
T Consensus 121 yHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~~--~lgaFrLt-p~G~~~~~~c~~~~fhph~~---~~~~~~~ 194 (211)
T 3rzv_A 121 IHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQ--ETGFFKLT-DHGLEEISSCRQKGFHPHSK---DPPLFCS 194 (211)
T ss_dssp EEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTTT--EEEEEEEC-HHHHHHHHHCCCCSSCCCCC---SSCSEEE
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCCC--eeeEEEec-cchhhhhhccccCCcccCCC---CCCceEE
Confidence 999999999999999999999999999999999999976 49999999 68999999999999999976 5899999
Q ss_pred CCceeecCCCceEEeeCC
Q 010576 490 CTDVYMNPNLKFDVIDLR 507 (507)
Q Consensus 490 ~~hv~~~~~~~~~v~DLR 507 (507)
|+||++++.+ |+|+|||
T Consensus 195 ~~hv~~~~~~-~~~~dlr 211 (211)
T 3rzv_A 195 CSHVTVVDRA-VTITDLR 211 (211)
T ss_dssp CSSEEEECCC-CEEEECC
T ss_pred eeeEEEcCCE-eEEEeCC
Confidence 9999998887 9999999
No 2
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=100.00 E-value=1.8e-46 Score=354.69 Aligned_cols=169 Identities=46% Similarity=0.835 Sum_probs=159.1
Q ss_pred CeEEEeCHHHHHHHHHHHhhcCCCCcceEEEecceeeCCEEEEEEEEecCCCCCCCC--cCCHHHHHHHhhhCCCcceEE
Q 010576 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDS--ATNEEEIFEVQDKRSLFPLGW 409 (507)
Q Consensus 332 ~~~V~I~~~~l~k~L~hA~~nt~~~~EvcGlL~G~~~~~~l~It~~~iP~q~~t~d~--~~~eeei~~~~~~~~l~~VGW 409 (507)
++.|.||.+++.+|++||..++.+++|+||+|+|++.++.+.|+++|+++|.+++++ +.++++++++++++|+.+|||
T Consensus 8 ~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e~~~~~~~~~l~~vGw 87 (178)
T 2znr_A 8 LRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGW 87 (178)
T ss_dssp CCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHHHHHHHHhCCCEEEEE
Confidence 789999999999999999998866789999999999999999999999999887777 578889999999999999999
Q ss_pred EcCCCCCCCCCCHHHHHhhhhhhccCCCeEEEEEcCCCCCCceeEEEecCCCCchhhhccccCCCcCCCCCCCCCCCccc
Q 010576 410 IHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQCQQRGFHPHDPPPDGGPIYKP 489 (507)
Q Consensus 410 yHSHPt~t~fpSs~DL~tq~~YQ~m~pe~IaIV~dP~~~~~~~gaFrLt~p~gm~~i~~c~~~gFhph~~~~~~~~~y~~ 489 (507)
|||||+++||||++|++||++||.|+|++|+|||||..+. .++|||+ |+||+.|.+|+++|||||++ +++||++
T Consensus 88 yHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~~--~~afrl~-~~g~~~~~~~~~~~f~p~~~---~~~~~~~ 161 (178)
T 2znr_A 88 IHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKD--TGIFRLT-NAGMLEVSACKKKGFHPHTK---EPRLFSI 161 (178)
T ss_dssp EEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGTE--EEEEEEC-HHHHHHHHHCCCCSSCCCCC---SSCSEEE
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCCc--ceEEEEE-CCcEeeecccCCCCcccCCC---CCCceEE
Confidence 9999999999999999999999999999999999999863 8999999 58999999999999999975 6899999
Q ss_pred CCceeecCCCceEEeeCC
Q 010576 490 CTDVYMNPNLKFDVIDLR 507 (507)
Q Consensus 490 ~~hv~~~~~~~~~v~DLR 507 (507)
|+||++++++ |+|+|||
T Consensus 162 ~~~~~~~~~~-~~~~~~r 178 (178)
T 2znr_A 162 CKHVLVKDIK-IIVLDLR 178 (178)
T ss_dssp CSSEEEECCC-CEEEECC
T ss_pred eceEEEeCCe-eEEEecC
Confidence 9999999998 9999999
No 3
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.6e-28 Score=246.50 Aligned_cols=130 Identities=24% Similarity=0.451 Sum_probs=109.8
Q ss_pred CeEEEeCHHHHHHHHHHHhhcCCCCcceEEEecceeeC-CEEEEEEEEecCCCCCCCC--cCCHHH---HHHHh--hhCC
Q 010576 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKN-RKFYITALIIPKQESTSDS--ATNEEE---IFEVQ--DKRS 403 (507)
Q Consensus 332 ~~~V~I~~~~l~k~L~hA~~nt~~~~EvcGlL~G~~~~-~~l~It~~~iP~q~~t~d~--~~~eee---i~~~~--~~~~ 403 (507)
..+|+|++.++++|++||+++. +.||||+|+|.+.+ +++.|+++|..++.+++++ ..+++. +.+.. .+++
T Consensus 24 ~~~V~is~lallkm~~Ha~~~~--~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v~~~ 101 (306)
T 4b4t_V 24 KETVYISSIALLKMLKHGRAGV--PMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRD 101 (306)
T ss_dssp CCEEEECHHHHHHHHHHTCSCS--SSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeHHHHHHHHHHhcCCC--CceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999955 99999999998765 5899999996667666666 456543 33332 3688
Q ss_pred CcceEEEcCCCCCCCCCCHHHHHhhhhhhccCCCeEEEEEcCCCCCCc---eeEEEecCCCCch
Q 010576 404 LFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRK---HGIFRLTSPGGMS 464 (507)
Q Consensus 404 l~~VGWyHSHPt~t~fpSs~DL~tq~~YQ~m~pe~IaIV~dP~~~~~~---~gaFrLt~p~gm~ 464 (507)
+.+||||||||+++||||++||+||+.||.+.+++|+||+||.++.+| +||||+++ +|+.
T Consensus 102 ~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~~G~~~i~Afr~~~-~~~~ 164 (306)
T 4b4t_V 102 QMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLID-TGAL 164 (306)
T ss_dssp CCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSSSCSSCEEEEECCH-HHHH
T ss_pred cceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCCCCceeeeEEEecC-cccc
Confidence 999999999999999999999999999999999999999999987654 69999996 4543
No 4
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.8e-28 Score=240.64 Aligned_cols=141 Identities=20% Similarity=0.326 Sum_probs=122.5
Q ss_pred CeEEEeCHHHHHHHHHHHhhcCCCCcceEEEecceeeC---CEEEEEEEEecCCCCCCCC--cCCHHHHHHHhhhCCCcc
Q 010576 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKN---RKFYITALIIPKQESTSDS--ATNEEEIFEVQDKRSLFP 406 (507)
Q Consensus 332 ~~~V~I~~~~l~k~L~hA~~nt~~~~EvcGlL~G~~~~---~~l~It~~~iP~q~~t~d~--~~~eeei~~~~~~~~l~~ 406 (507)
.+.+.||.+++.+|+..|..+| ++||+|+|+... +..+|+++++|+|.++.++ +.++...++|++..||++
T Consensus 37 ~~t~vlPknLlkkFi~IAD~~T----q~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~l~dLe~ 112 (254)
T 2og4_A 37 QNVYVLPKNLLKKFIEISDVKI----QVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPDTEGLEL 112 (254)
T ss_dssp SCEEEEEHHHHHHHHHTSCSSS----CCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTTCTTCEE
T ss_pred CcEEEcCHHHHHHHHHHhhccc----eEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchhhcCCEe
Confidence 5789999999999999999965 899999999953 5889999999999999988 556666788999999999
Q ss_pred eEEEcCCCCCCCCCCHHHHHhhhhhhccC-CCeEEEEEcCCCCCCceeEEEecCCCCch------hhhccccCCCcCC
Q 010576 407 LGWIHTHPTQSCFMSSIDVHTHYSYQIML-PESVAIVMAPQDATRKHGIFRLTSPGGMS------VIRQCQQRGFHPH 477 (507)
Q Consensus 407 VGWyHSHPt~t~fpSs~DL~tq~~YQ~m~-pe~IaIV~dP~~~~~~~gaFrLt~p~gm~------~i~~c~~~gFhph 477 (507)
+|||||||+++||||++|||||++||.|+ +++|+|||+|.....++++||||+ +|++ .+..+...||+|+
T Consensus 113 LGWIHTqptq~~fLSs~Dl~tH~~~~~~~~~eaIaIvcsftpgs~sl~af~LT~-~G~~Wg~~n~d~~~~~~~g~~~~ 189 (254)
T 2og4_A 113 LGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTD-EGYQWGEENKDIMNVLSEGFEPT 189 (254)
T ss_dssp EEEEEEESSCCSSCCHHHHHHHHHHHTTTCTTCEEEEEEEETTEEEEEEEEECH-HHHHHHHTCCSCCSSCCTTCCGG
T ss_pred cceEeeCCCCCcccCHHHHHHHHHHHHhcCCCeEEEEEecCCCCceeEEEEcCh-hhhhhhhhcccccccCCCCCCcc
Confidence 99999999999999999999999999955 999999999865444689999994 7986 3344656788766
No 5
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=99.94 E-value=4.9e-27 Score=215.19 Aligned_cols=107 Identities=24% Similarity=0.405 Sum_probs=95.9
Q ss_pred cchhHHHhhcCccccCCCcHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHH
Q 010576 6 EGINIAASAQRLDVDNRIALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKK 85 (507)
Q Consensus 6 ~~~~l~~~a~~~e~n~~iplr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~ 85 (507)
..-+|+++|.+++||++|||++|||+|++|+++|.+|+++||+++|||+|+||++||+++||+||||++....++..+.+
T Consensus 14 ~i~~L~~~A~~~~v~~~i~l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l~ 93 (146)
T 2xze_A 14 RVRALSQLGSAVEVNEDIPPRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVK 93 (146)
T ss_dssp HHHHHHHHHTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHHH
T ss_pred CHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHHH
Confidence 45579999999999999999999999999999999999999999999999999999999999999999766445555556
Q ss_pred HHHHH-HHHHHhhCHHHHHHHHHHHHhh
Q 010576 86 KLLNA-LSELEELQPAVQQKINELNRKK 112 (507)
Q Consensus 86 ~l~~v-l~~lE~LK~~l~~~Y~~~~~~~ 112 (507)
+++.+ ++++|.||+.|+++|+++++.+
T Consensus 94 ~l~~~~~~~lE~LK~~L~~rY~~e~~~~ 121 (146)
T 2xze_A 94 KLKEIAFPKAEELKAELLKRYTKEYTEY 121 (146)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665 9999999999999999766644
No 6
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=99.93 E-value=8.6e-27 Score=230.79 Aligned_cols=138 Identities=20% Similarity=0.335 Sum_probs=116.1
Q ss_pred CeEEEeCHHHHHHHHHHHhhcCCCCcceEEEecceeeC---CEEEEEEEEecCCCCCCCC--cCCHHHHHHHhhhCCCcc
Q 010576 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKN---RKFYITALIIPKQESTSDS--ATNEEEIFEVQDKRSLFP 406 (507)
Q Consensus 332 ~~~V~I~~~~l~k~L~hA~~nt~~~~EvcGlL~G~~~~---~~l~It~~~iP~q~~t~d~--~~~eeei~~~~~~~~l~~ 406 (507)
.+.+.||..++.+|+..|..+| ++||+|+|+... +..+|+++++|+|.++.++ +.++...++|+ .||++
T Consensus 38 ~~t~vlPknllkkFi~IADlrT----q~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l--~dLe~ 111 (273)
T 2p8r_A 38 GYTYILPKNILKKFITISDLRT----QIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL--RDFEP 111 (273)
T ss_dssp SCEEEEEHHHHHHHHHTSCSSS----CCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT--TTSEE
T ss_pred ccEEEecHHHHHHHHHHhhccc----eEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh--ccccc
Confidence 5789999999999999999865 899999999953 6889999999999999888 44443444555 99999
Q ss_pred eEEEcCCCCCCCCCCHHHHHhhhhhhcc---C--CCeEEEEEcCCCCCCceeEEEecCCCCch------hhhccccCCCc
Q 010576 407 LGWIHTHPTQSCFMSSIDVHTHYSYQIM---L--PESVAIVMAPQDATRKHGIFRLTSPGGMS------VIRQCQQRGFH 475 (507)
Q Consensus 407 VGWyHSHPt~t~fpSs~DL~tq~~YQ~m---~--pe~IaIV~dP~~~~~~~gaFrLt~p~gm~------~i~~c~~~gFh 475 (507)
+|||||||+++||||++||+||++||.| + +++|+|||+|.....++++||||+ +|++ .+..+ ..|||
T Consensus 112 LGWIHTqp~e~~~LSs~Dl~tH~~~~~~~~~~~~~e~I~Ivcsftpgs~sl~af~LT~-~G~~Wg~~n~d~~~~-~~Gf~ 189 (273)
T 2p8r_A 112 LGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTP-SGYEWGKANTDKGNN-PKGYM 189 (273)
T ss_dssp EEEEEEESSCCSSCCHHHHHHHHHHHHHCTTCCTTTCEEEEEEEETTEEEEEEEEECH-HHHHHHHHCCCCSSC-CTTCC
T ss_pred cceEeeCCCCCCCcCHHHHHHHHHHHhcccccCCCceEEEEEecCCCCceeEEEEcCh-HHhhhhhhccccccC-CCCCC
Confidence 9999999999999999999999999986 4 599999999865444689999995 6985 12223 77999
Q ss_pred CC
Q 010576 476 PH 477 (507)
Q Consensus 476 ph 477 (507)
|+
T Consensus 190 p~ 191 (273)
T 2p8r_A 190 PT 191 (273)
T ss_dssp GG
T ss_pred cc
Confidence 87
No 7
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=99.90 E-value=1.7e-24 Score=197.58 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=86.3
Q ss_pred ccccCCCcHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHH-HHHHHHHHHHHHH
Q 010576 17 LDVDNRIALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLY-LKKKLLNALSELE 95 (507)
Q Consensus 17 ~e~n~~iplr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~-~~~~l~~vl~~lE 95 (507)
..+|.+||+++|||||++|+++|.+|++|||+|+||||||||++|| ++||+||||+......+.. .+++++.||++||
T Consensus 27 ~~~d~~ipl~~y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~-~kIpkHpdyk~~~~~~k~~l~k~~~~~vl~~lE 105 (144)
T 2a9u_A 27 EVKPEKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVY-NLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAE 105 (144)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHhcCcchhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 6688889999999999999999999999999999999999999999 7999999999876555555 3688999999999
Q ss_pred hhCHHHHHHHHH-HHHhh
Q 010576 96 ELQPAVQQKINE-LNRKK 112 (507)
Q Consensus 96 ~LK~~l~~~Y~~-~~~~~ 112 (507)
+||+.|+++|++ +++.+
T Consensus 106 ~LK~~L~~rYe~~e~~~~ 123 (144)
T 2a9u_A 106 RLSESLKLRYEEAEVRKK 123 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999 66644
No 8
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=99.85 E-value=6.4e-21 Score=173.89 Aligned_cols=119 Identities=15% Similarity=0.279 Sum_probs=98.6
Q ss_pred EEEeCHHHHHHHHHHHhhcCCCCcceEEEecceeeCCEEEEEEEEecC-CCCCCCC-cCCHHHHHHHh---hhCCCcceE
Q 010576 334 QLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPK-QESTSDS-ATNEEEIFEVQ---DKRSLFPLG 408 (507)
Q Consensus 334 ~V~I~~~~l~k~L~hA~~nt~~~~EvcGlL~G~~~~~~l~It~~~iP~-q~~t~d~-~~~eeei~~~~---~~~~l~~VG 408 (507)
+|.|+..++.+|++||+.+. |.|+||+|+|+..++.+.|+.+|..+ ...+++. .++++++++.+ +.+|+.+||
T Consensus 1 ml~i~~~~l~~i~~ha~~~~--p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~~~~~~~~~~~~g~~ivG 78 (146)
T 2kks_A 1 MITLTKKQMEEMLAHARQAL--PNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMDPREQLTAVKDMRKNGWVMLG 78 (146)
T ss_dssp CEEEEHHHHHHHHHHHHHHT--TSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CEEECHHHHHHHHHHHHhcC--CcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceEEECHHHHHHHHHHHHHCCCEEEE
Confidence 37899999999999999966 99999999999998889999988433 3344444 77888776653 678999999
Q ss_pred EEcCCCCCCCCCCHHHHHhhhhhhccCCCeEEEEEcCCC-CCCceeEEEecC
Q 010576 409 WIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQD-ATRKHGIFRLTS 459 (507)
Q Consensus 409 WyHSHPt~t~fpSs~DL~tq~~YQ~m~pe~IaIV~dP~~-~~~~~gaFrLt~ 459 (507)
||||||+++|+||.+|+.++ +.++.++||+++.. ....+++|++.+
T Consensus 79 ~~HSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~~~~~~~~af~~~~ 125 (146)
T 2kks_A 79 NFHSHPATPARPSAEDKRLA-----FDPSLSYLIISLAEPQKPVCKSFLIKK 125 (146)
T ss_dssp EEEEESSSCSSCCHHHHTTC-----CSSSCEEEEEECSCSSSCEEEEEEECS
T ss_pred EEeCCCcCCCCCCHHHHHhh-----hcCCCeEEEEEccCCCceEEEEEEEeC
Confidence 99999999999999999864 35888999999876 334689999974
No 9
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=99.84 E-value=4.9e-21 Score=175.98 Aligned_cols=119 Identities=15% Similarity=0.276 Sum_probs=94.0
Q ss_pred EEeCHHHHHHHHHHHhhcCCCCcceEEEecceee-CCEEEEEEEEecCCC--CCC-CC-cCCHHHHHHH---hhhCCCcc
Q 010576 335 LHISTTMMDNFMKLAKSNTDKNLETCGILAGSLK-NRKFYITALIIPKQE--STS-DS-ATNEEEIFEV---QDKRSLFP 406 (507)
Q Consensus 335 V~I~~~~l~k~L~hA~~nt~~~~EvcGlL~G~~~-~~~l~It~~~iP~q~--~t~-d~-~~~eeei~~~---~~~~~l~~ 406 (507)
|.|+.+++.+|+.||+... |.|+||+|+|+.. ++.+.|+.+|...+. .++ +. .++++++++. ++.+|+.+
T Consensus 1 l~i~~~~l~~i~~ha~~~~--p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~~~~~~~~~~~g~~i 78 (153)
T 2kcq_A 1 MKTTPDILDQIRVHGADAY--PEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDYRAADAAAQEQGLDV 78 (153)
T ss_dssp CBCCHHHHHHHHHHHHHHT--TSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSHHHHHHHHHHHTCEE
T ss_pred CEeCHHHHHHHHHHHHhcC--CcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECHHHHHHHHHHHHHCCCeE
Confidence 4689999999999999965 9999999999998 788899988743333 222 22 5666555554 45789999
Q ss_pred eEEEcCCCCCCCCCCHHHHHhhhhhhccCCCeEEEEEcCCCCC-CceeEEEecCC
Q 010576 407 LGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDAT-RKHGIFRLTSP 460 (507)
Q Consensus 407 VGWyHSHPt~t~fpSs~DL~tq~~YQ~m~pe~IaIV~dP~~~~-~~~gaFrLt~p 460 (507)
||||||||+++|+||.+|+.++ +.+++++||+++.... ..+++||+++.
T Consensus 79 vG~yHSHP~~~~~PS~~D~~~~-----~~~~~~~lIvs~~~~~~~~~~af~~~~~ 128 (153)
T 2kcq_A 79 VGVYHSHPDHPARPSATDLEEA-----TFPGFTYVIVSVRDGAPEALTAWALAPD 128 (153)
T ss_dssp EEEEEECSSSSSSCCHHHHHTC-----CCTTSEEEEEEEETTEEEEEEEEEECTT
T ss_pred EEEEeCCCCCCCCCCHHHHHhh-----hcCCCeEEEEECCCCCccEEEEEEEeCC
Confidence 9999999999999999999643 4689999999986532 25899999753
No 10
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.72 E-value=3.4e-17 Score=154.83 Aligned_cols=127 Identities=13% Similarity=0.206 Sum_probs=97.1
Q ss_pred CeEEEeCHHHHHHHHHHHhhcC--CCCcceEEEecceeeCCEEEEEEEE-ecCCCCCCC--C-cCCHHHH---HHHhh--
Q 010576 332 PLQLHISTTMMDNFMKLAKSNT--DKNLETCGILAGSLKNRKFYITALI-IPKQESTSD--S-ATNEEEI---FEVQD-- 400 (507)
Q Consensus 332 ~~~V~I~~~~l~k~L~hA~~nt--~~~~EvcGlL~G~~~~~~l~It~~~-iP~q~~t~d--~-~~~eeei---~~~~~-- 400 (507)
+..|.|.+.++++|++||.... +.+.|+||+|+|...++.+.|+++| +|......+ . ..+.+-+ ++...
T Consensus 7 ~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~~~v 86 (187)
T 2o95_A 7 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKV 86 (187)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHHHTT
T ss_pred CCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHHHHh
Confidence 5789999999999999987631 1478999999999999999999999 554322111 2 4555422 22222
Q ss_pred hCCCcceEEEcCCCCCCCCCCHHHHHhhhhhhccCCCeEEEEEcCCCCCC--ceeEEEecCCCCc
Q 010576 401 KRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATR--KHGIFRLTSPGGM 463 (507)
Q Consensus 401 ~~~l~~VGWyHSHPt~t~fpSs~DL~tq~~YQ~m~pe~IaIV~dP~~~~~--~~gaFrLt~p~gm 463 (507)
+.++.+||||||||.. |..|+.+|..||.+.+.+|+||+||..+.. .+++|++++ .++
T Consensus 87 ~~~~~iVGWY~s~~~~----s~~d~~i~~~~~~~~~~~v~Livd~~~~~~~l~i~ay~~~~-~~~ 146 (187)
T 2o95_A 87 NARERIVGWYHTGPKL----HKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVE-EVH 146 (187)
T ss_dssp SSSCEEEEEEECCSSC----CTTHHHHHHHHTTTCTTCEEEEECCCTTC-CCSEEEEEEEE-ECC
T ss_pred CCCCCEEEEEcCCCcC----CcccHHHHHHHHhcCCCCEEEEECCCCCCCCcCeEEEEEec-hhc
Confidence 5699999999999976 678888888899999999999999986532 479999983 444
No 11
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=99.69 E-value=4.8e-17 Score=144.35 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=77.9
Q ss_pred EEEeCHHHHHHHHHHHhhcCCCCcceEEEecceeeCCEEEEEEEE-ecCCCCCCCCcCCHHHHHH-HhhhCCCcceEEEc
Q 010576 334 QLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALI-IPKQESTSDSATNEEEIFE-VQDKRSLFPLGWIH 411 (507)
Q Consensus 334 ~V~I~~~~l~k~L~hA~~nt~~~~EvcGlL~G~~~~~~l~It~~~-iP~q~~t~d~~~~eeei~~-~~~~~~l~~VGWyH 411 (507)
+|.|+..++.+|++||+... |.|+||+|+|+.. .|++++ +| ..+++.+ ..|. .++.+++.+|||||
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~--P~E~cGlL~g~~~----~v~~~~~~p-~~~~~~~-----~~f~~~~~~~~~~ivG~~H 70 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAH--PDEFIALLSGSKD----VMDELIFLP-FVSGSVS-----AVIHLDMLPIGMKVFGTVH 70 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHT--TSCCEEEEEESTT----EECEEEECC-CCC------------------CCCEEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHhcC--CCeeEEEEecccC----EEEEEEECC-CCCCCcC-----ceeeeeeccCCCEEEEEEE
Confidence 48899999999999999966 9999999999974 778888 55 4332211 1232 35678999999999
Q ss_pred CCCCCCCCCCHHHHHhhhhhhccCCCeEEEEEcCCCCCCceeEEEe
Q 010576 412 THPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDATRKHGIFRL 457 (507)
Q Consensus 412 SHPt~t~fpSs~DL~tq~~YQ~m~pe~IaIV~dP~~~~~~~gaFrL 457 (507)
|||+.+++||.+|+.++. .+..+.||+++......+++|+.
T Consensus 71 SHP~~~~~PS~~D~~~~~-----~~~~~~lIvs~~~~~~~~~~f~~ 111 (124)
T 1oi0_A 71 SHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPYDENSWKCYNR 111 (124)
T ss_dssp EESSSCCSCCHHHHHHHH-----HSCSEEEEEETTCCTTCEEEEET
T ss_pred ECcCCCCccCHHHHHhhh-----cCCCEEEEEEccCCCceEEEEec
Confidence 999999999999998743 47788888887654334566554
No 12
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.61 E-value=1.9e-15 Score=137.55 Aligned_cols=114 Identities=14% Similarity=0.157 Sum_probs=83.3
Q ss_pred CeEEEeCHHHHHHHHHHHhhc---CCCCcceEEEecceeeCCEEEEEEEEecCCCCCCCC-cCCHH---HHHHHh--hhC
Q 010576 332 PLQLHISTTMMDNFMKLAKSN---TDKNLETCGILAGSLKNRKFYITALIIPKQESTSDS-ATNEE---EIFEVQ--DKR 402 (507)
Q Consensus 332 ~~~V~I~~~~l~k~L~hA~~n---t~~~~EvcGlL~G~~~~~~l~It~~~iP~q~~t~d~-~~~ee---ei~~~~--~~~ 402 (507)
...|.|.+.++++|++||... .+.+.+++|+|+|...++.+.|+++|..+.+.+++. ..|.+ ++++.. ...
T Consensus 5 ~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~~d~~y~~~m~~~~k~v~~ 84 (141)
T 4e0q_A 5 SVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQVFS 84 (141)
T ss_dssp CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEEECHHHHHHHHHHHHHHST
T ss_pred cEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCceeecHHHHHHHHHHHHHhCC
Confidence 468999999999999999652 123689999999999999999999993333333333 44543 233332 357
Q ss_pred CCcceEEEcCCCCCCCCCCHHHHHhhhhhhccCCCeEEEEEcCCCCC
Q 010576 403 SLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPESVAIVMAPQDAT 449 (507)
Q Consensus 403 ~l~~VGWyHSHPt~t~fpSs~DL~tq~~YQ~m~pe~IaIV~dP~~~~ 449 (507)
++.+|||||||| +++..|+..|..|+...+..|+||+||..+.
T Consensus 85 ~e~iVGWY~s~~----~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~ 127 (141)
T 4e0q_A 85 DLDFIGWYTTGD----NPTADDIKIQRQIAAINECPIMLQLNPLSRS 127 (141)
T ss_dssp TCEEEEEEEEEC-----------CHHHHHHHTTCCCEEEEESCSCCC
T ss_pred CccEEEEEeCCC----CCCcchHHHHHHHHHHCCCCEEEEECCCccC
Confidence 899999999997 5889999999999999999999999998764
No 13
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5.9e-16 Score=163.24 Aligned_cols=130 Identities=17% Similarity=0.260 Sum_probs=103.2
Q ss_pred CeEEEeCHHHHHHHHHHHhhcCCCCcceEEEecceeeC---CEEEEEEEEecCCCCCCCC-cCC---HHHHHHHhhhCCC
Q 010576 332 PLQLHISTTMMDNFMKLAKSNTDKNLETCGILAGSLKN---RKFYITALIIPKQESTSDS-ATN---EEEIFEVQDKRSL 404 (507)
Q Consensus 332 ~~~V~I~~~~l~k~L~hA~~nt~~~~EvcGlL~G~~~~---~~l~It~~~iP~q~~t~d~-~~~---eeei~~~~~~~~l 404 (507)
-..+.||..++.+|+..|..+| ++||+|+|.... +..+|+++++|+|.|+.++ .+. +.++ |+...||
T Consensus 348 ~~tyVlPkNLLkKFI~IADlrT----QicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp~lp~he~--~~~l~dL 421 (565)
T 3sbg_A 348 QNVYVLPKNLLKKFIEISDVKI----QVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGD--LPDTEGL 421 (565)
T ss_dssp SCEEEEEHHHHHHHHHHSCSSS----CCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEECCCCCCTT--STTCTTC
T ss_pred CcEEEccHHHHHHHHHHhhccc----eeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECCCCCcccc--ccccccC
Confidence 3579999999999999999865 899999999973 6799999999999999888 332 2222 2336899
Q ss_pred cceEEEcCCCCCCCCCCHHHHHhhhhhhccC-CCeEEEEEcCCCCCCceeEEEecCCCCchhhhc
Q 010576 405 FPLGWIHTHPTQSCFMSSIDVHTHYSYQIML-PESVAIVMAPQDATRKHGIFRLTSPGGMSVIRQ 468 (507)
Q Consensus 405 ~~VGWyHSHPt~t~fpSs~DL~tq~~YQ~m~-pe~IaIV~dP~~~~~~~gaFrLt~p~gm~~i~~ 468 (507)
+.+||+||||+++||||++||+||++.-... ..+|.|+|+-.-.+-+..||.|| ++|.+-..+
T Consensus 422 e~LGWIHTqp~et~fLSs~Dl~THakl~~~n~~~~I~itvsftPGS~SLsAy~LT-~eGyeWG~~ 485 (565)
T 3sbg_A 422 ELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLT-DEGYQWGEE 485 (565)
T ss_dssp EEEEEEEEESSCCSSCCHHHHHHHHHHHSSSCTTCEEEEEEEETTEEEEEEEEEC-HHHHHHHHT
T ss_pred EecceeeecCCcccccCHHHHHHHHHHHHhCCCCeEEEEEEecCCceEEEEEecC-HhHHHHHhh
Confidence 9999999999999999999999999864332 36788888765433346999999 478655433
No 14
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.00 E-value=2.3e-09 Score=110.34 Aligned_cols=123 Identities=11% Similarity=0.240 Sum_probs=87.4
Q ss_pred CeEEEeCHHHHHHHHHHHhh-cCCCCcceEEEecceeeCCEEEEEEEE-ecCCCCCCC-C--cCCHH---HHHHHh--hh
Q 010576 332 PLQLHISTTMMDNFMKLAKS-NTDKNLETCGILAGSLKNRKFYITALI-IPKQESTSD-S--ATNEE---EIFEVQ--DK 401 (507)
Q Consensus 332 ~~~V~I~~~~l~k~L~hA~~-nt~~~~EvcGlL~G~~~~~~l~It~~~-iP~q~~t~d-~--~~~ee---ei~~~~--~~ 401 (507)
...|.|-+.+++.|++|+.. ....+..|+|.|+|...++.+.|+++| +|..+...+ . ..|.+ .+++.. ..
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 46799999999999999764 223356899999999999999999999 554332211 1 23442 344432 35
Q ss_pred CCCcceEEEcCCCCCCCCCCHHHHHhhhhhhccCC-CeEEEEEcCCCCCC--ceeEEEec
Q 010576 402 RSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLP-ESVAIVMAPQDATR--KHGIFRLT 458 (507)
Q Consensus 402 ~~l~~VGWyHSHPt~t~fpSs~DL~tq~~YQ~m~p-e~IaIV~dP~~~~~--~~gaFrLt 458 (507)
.++.+||||||+|. ++..|+..|..|+...+ ..|.+++++..... .+++|...
T Consensus 85 ~~e~iVGWY~tg~~----~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~~~~lpi~aY~s~ 140 (338)
T 4b4t_U 85 AKEKLIGWYHSGPK----LRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAI 140 (338)
T ss_dssp CSCEEEEEEECCSS----CCSTHHHHHHHHGGGCCSCCCEEEECSCCCSSSCSEEEEEEE
T ss_pred ccCCEEEEEecCCC----CCccHHHHHHHHHhccCCCcEEEEecCCCCCCCcceEEEEee
Confidence 78999999999864 66677777877877664 45777777765432 26888765
No 15
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=96.65 E-value=0.0064 Score=53.26 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHH
Q 010576 27 YYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQ 102 (507)
Q Consensus 27 ~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~ 102 (507)
.++.-|..++++|--+-..||++.||.+|..=+.+|+.-|..-+ .....|..++.++.+-|.++|.||..|.
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~----~~~~~k~~lr~K~~eYl~RAE~LK~~l~ 84 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEA----QGDKAKQSIRAKCTEYLDRAEKLKEYLK 84 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999987664311 1335678899999999999999999774
No 16
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=96.50 E-value=0.0096 Score=49.35 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHH
Q 010576 30 RIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQ 103 (507)
Q Consensus 30 Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~ 103 (507)
-.|.+++++|--+..+||++.|+.+|..=+.+|+.-+..-+ .+..|..++.++..-+.++|+||..|++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~-----d~~~k~~lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTK-----DNTKRCNLREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999987765432 2345778999999999999999998864
No 17
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=96.42 E-value=0.014 Score=48.90 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Q 010576 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQK 104 (507)
Q Consensus 28 Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~~ 104 (507)
++..|.+++++|--+...||++.||.+|..=+.+|+.-|..-+ .+..|..++.++.+-+.++|+||..|+..
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~-----~~~~k~~l~~K~~eYl~RAE~LK~~l~~~ 82 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTK-----ESSKRCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5668899999999999999999999999999999987764322 23567789999999999999999998643
No 18
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.019 Score=47.11 Aligned_cols=73 Identities=10% Similarity=0.114 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHH
Q 010576 26 RYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQ 103 (507)
Q Consensus 26 r~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~ 103 (507)
..++.-|..++++|--....||++.|+-+|..=+.+|+.-+..=+ .+..|..++.++.+-+.++|.||..|++
T Consensus 7 ~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~-----~~~~k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 7 GDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEK-----NPKSKDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 347889999999999999999999999999999999987663211 3456788999999999999999998853
No 19
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=95.92 E-value=0.011 Score=48.62 Aligned_cols=72 Identities=14% Similarity=0.041 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHH
Q 010576 24 ALRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPA 100 (507)
Q Consensus 24 plr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~ 100 (507)
|-..++..|.+++++|--+-+.||++.||.+|..=+.+|+.-|..=||- ..|..++.++.+-+.++|+||..
T Consensus 11 ~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~-----~~k~~ir~K~~eY~~RAE~LK~~ 82 (83)
T 2w2u_A 11 AQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDG-----STAAIYEQMINEYKRRIEVLKEL 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTS-----STHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556899999999999999999999999999999999887665432322 34667889999999999999864
No 20
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=95.62 E-value=0.017 Score=47.47 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHH
Q 010576 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAV 101 (507)
Q Consensus 28 Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l 101 (507)
++..|.+++++|--+-+.||++.||.+|..=+.+|+.-|..-|+- ..|..++.++.+-+.++|+||..|
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~-----~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPES-----VARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTC-----TTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 678999999999999999999999999999999887665432222 346788899999999999999866
No 21
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=94.32 E-value=0.0075 Score=59.62 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHH
Q 010576 28 YYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQ 103 (507)
Q Consensus 28 Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~ 103 (507)
+..+|.+++++|--+.++||++.|+.+|..=+.+++.-+..-+ .+..|..++.++.+-+.++|+||..|++
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~-----d~~~k~~lr~Ki~eYl~RAE~LK~~L~k 89 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTK-----DNTKRCNLREKISKYMDRAENIKKYLDQ 89 (257)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999988775433 2345778889999999999999998874
No 22
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=92.23 E-value=0.51 Score=41.62 Aligned_cols=84 Identities=20% Similarity=0.187 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHhhcCCCCcceEEEecceeeCCEEEEEEEEecCCCCCCCC-cCCHHHHHHHhhhCCCcceEEEcCCCCC
Q 010576 338 STTMMDNFMKLAKSNTDKNLETCGILAGSLKNRKFYITALIIPKQESTSDS-ATNEEEIFEVQDKRSLFPLGWIHTHPTQ 416 (507)
Q Consensus 338 ~~~~l~k~L~hA~~nt~~~~EvcGlL~G~~~~~~l~It~~~iP~q~~t~d~-~~~eeei~~~~~~~~l~~VGWyHSHPt~ 416 (507)
+++.+..++...... .+.|...+|+=.-.+..+....++ .||-+. ...+.|+|..+-..+..-|...|-||+.
T Consensus 7 s~~~v~~~l~~~l~~--~~~E~f~vl~Ld~~n~li~~~~l~----~Gt~~~~~v~pRei~~~Al~~~A~~vIl~HNHPSG 80 (126)
T 2qlc_A 7 GARDVFEYMKGRIPD--ETKEHLFVLFLSTKNQILRHETIT----IGTLTASLIHPREIFKAAIRESAHSIILVHNHPSG 80 (126)
T ss_dssp SHHHHHHHHTTCCSC--TTSCEEEEEEECTTCBEEEEEEEE----ESSCCGGGCCHHHHHHHHHHTTCSEEEEEEECSSS
T ss_pred CHHHHHHHHHHHhCc--CCCeEEEEEEEcCCCCEEEEEEec----CCCCCcEeecHHHHHHHHHHcCCcEEEEEecCCCC
Confidence 344455555543332 367875554311112223333332 244455 6789999999999999999999999999
Q ss_pred CCCCCHHHHHh
Q 010576 417 SCFMSSIDVHT 427 (507)
Q Consensus 417 t~fpSs~DL~t 427 (507)
.+.||..|+..
T Consensus 81 ~~~PS~~D~~~ 91 (126)
T 2qlc_A 81 DVQPSNADKQV 91 (126)
T ss_dssp CCSCCHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 99999999863
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=84.72 E-value=0.18 Score=52.84 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Q 010576 27 YYYRIADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQK 104 (507)
Q Consensus 27 ~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~~ 104 (507)
.|+..|.+++++|--+.+.||++.||.+|..=+.+++.-|.. .....+.+..++.++.+-+.++|.||..|++.
T Consensus 6 ~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~----e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~ 79 (444)
T 2zan_A 6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKY----EAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKK 79 (444)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh----hccChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 478899999999999999999999999999999998766632 11122346678889999999999999998543
No 24
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=44.24 E-value=65 Score=25.87 Aligned_cols=62 Identities=8% Similarity=-0.059 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhC
Q 010576 32 ADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQ 98 (507)
Q Consensus 32 a~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK 98 (507)
-.+-++.|+-|.-.||++.|=++|---+..+-..|..-. .+..|..+..-.+++-+|.|..|
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~-----d~~~r~kW~~~~~ei~~E~~~Vk 73 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVK-----DTHLRQKWQQVWQEINVEAKQVK 73 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCS-----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHhHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999988877744444432 33556666554555556666554
No 25
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=27.22 E-value=98 Score=25.01 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 010576 25 LRYYYRIADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (507)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~AYily~Ry~~L 61 (507)
.....+.+..++..|.+|+..|+++.|.-+|.+-+.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 42 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL 42 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3557788999999999999999999999998887665
No 26
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=24.46 E-value=1.2e+02 Score=25.35 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHH
Q 010576 25 LRYYYRIADNILKQADIFREEKNIIDLYVML 55 (507)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~AYily 55 (507)
.+.|++.|..-++.|...++.|++..|-...
T Consensus 4 ~~~wl~~A~~dL~~A~~~~~~g~y~~a~f~a 34 (122)
T 1wol_A 4 VEDWIKQAERDLEEARYAKSGGYYELACFLS 34 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3679999999999999999999999877666
No 27
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=22.51 E-value=1.9e+02 Score=30.41 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccC-CCCcccc
Q 010576 31 IADNILKQADIFREEKNIIDLYVMLLRFSSLVTETI-PCHRDYL 73 (507)
Q Consensus 31 sa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekL-p~Hpdyk 73 (507)
+|..+...|.+|..-|+++.|=-+|-|=+.+....| +.||+..
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 435 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK 435 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 677888899999999999999999999999887766 4598775
No 28
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=22.51 E-value=1.6e+02 Score=24.36 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhH
Q 010576 25 LRYYYRIADNILKQADIFREEKNIIDL 51 (507)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~A 51 (507)
.+.|++-|..-|+.|+..+++|++..|
T Consensus 5 ~~~~l~~A~~~L~~A~~~~~~g~y~~a 31 (126)
T 2hsb_A 5 LELRIRKAEKLVQDAKKEFEMGLYERC 31 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367999999999999999999999877
No 29
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=22.19 E-value=1.3e+02 Score=25.11 Aligned_cols=32 Identities=13% Similarity=-0.089 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHH
Q 010576 25 LRYYYRIADNILKQADIFREEKNIIDLYVMLL 56 (507)
Q Consensus 25 lr~Y~Rsa~~llr~A~iy~~egn~e~AYily~ 56 (507)
.+.|++.|..-++.|...++.|++..|-....
T Consensus 4 ~~~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~ 35 (127)
T 1ufb_A 4 ARDWLEQARHNLRHAQGSLGLGDYAWACFAAQ 35 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 36799999999999999999999987665543
No 30
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=22.07 E-value=2.5e+02 Score=21.61 Aligned_cols=55 Identities=15% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Q 010576 31 IADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQK 104 (507)
Q Consensus 31 sa~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~~ 104 (507)
....++..|.+|.+.|+++.|--.|-+.+.+ +|+.. ....+...+..|+..+..|
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------~p~~~------------~~~~a~~~l~~l~~~~~~r 129 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ-------YPGSD------------AARVAQERLQSIRLGQQLR 129 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTSH------------HHHHHHHHHHHHC------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CCCCh------------HHHHHHHHHHHHHhhhhcC
No 31
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=20.96 E-value=2.3e+02 Score=22.93 Aligned_cols=27 Identities=4% Similarity=-0.255 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHH
Q 010576 35 ILKQADIFREEKNIIDLYVMLLRFSSL 61 (507)
Q Consensus 35 llr~A~iy~~egn~e~AYily~Ry~~L 61 (507)
++..|.+|.+.|+++.|--.|-+-+.+
T Consensus 55 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 55 FLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344577777778887777777765554
No 32
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=20.80 E-value=1.4e+02 Score=22.63 Aligned_cols=31 Identities=10% Similarity=-0.122 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 010576 31 IADNILKQADIFREEKNIIDLYVMLLRFSSL 61 (507)
Q Consensus 31 sa~~llr~A~iy~~egn~e~AYily~Ry~~L 61 (507)
.+..++..|.+|.+.|+++.|.-+|.+-+.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 33 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL 33 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4667788899999999999999998887665
No 33
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=20.40 E-value=1.2e+02 Score=25.13 Aligned_cols=62 Identities=5% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcccccccHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 010576 32 ADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRDYLASFKSQKLYLKKKLLNALSELEELQPAVQQKINE 107 (507)
Q Consensus 32 a~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpdyk~~~~~~k~~~~~~l~~vl~~lE~LK~~l~~~Y~~ 107 (507)
+.-+++.|.+|..-|+++.|.-.|.+.+.| .+.....+...+..+...+.+.+..-++.|.+
T Consensus 97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~ 158 (162)
T 3rkv_A 97 EKALFRRAKARIAAWKLDEAEEDLKLLLRN--------------HPAAASVVAREMKIVTERRAEKKADSRVTYSK 158 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------CGGGHHHHHHHHHHHHHHHHHHTTSSCC----
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 34
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=20.13 E-value=3.2e+02 Score=22.41 Aligned_cols=53 Identities=6% Similarity=-0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCCCcc--cccccHHHHHHHHHHHHHHHH
Q 010576 32 ADNILKQADIFREEKNIIDLYVMLLRFSSLVTETIPCHRD--YLASFKSQKLYLKKKLLNALS 92 (507)
Q Consensus 32 a~~llr~A~iy~~egn~e~AYily~Ry~~Lv~ekLp~Hpd--yk~~~~~~k~~~~~~l~~vl~ 92 (507)
..-++..|.+|.+.|+++.|.-.|.+.+.+. |.+++ ++ .....+++++.+...
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~----~~l~~~~~~~~~~~~ 133 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAE----GNGGSDAMK----RGLETTKRKIEEANR 133 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----SSSCCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCchHHHHH----HHHHHHHHHHHHHHh
Done!