BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010577
(507 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/477 (76%), Positives = 424/477 (88%), Gaps = 12/477 (2%)
Query: 1 MAQVQAQGQNVNG------------GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMG 48
MAQVQ QGQ NG GGA A QFG TSLYVGDL+ NVTDSQL+D F QMG
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMG 60
Query: 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRK 108
VV+VRVCRDL TRRSLGYGYVNF+N Q+AARA++ LN+ PL GKPIRVMYSHRDPS+R+
Sbjct: 61 TVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
Query: 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKA 168
SGAGNIFIKNLD++IDHKALHDTFS+FGNI+SCKVA D +GQSKGYGFVQ+ NEESAQKA
Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKA 180
Query: 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT 228
IEKLNGMLLNDKQVYVG FLR+QERD+ NK+KFTNVYVKNL+ESTT++DL+ +FGEYG
Sbjct: 181 IEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 229 ITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELEL 288
ITSAVVM+DG+GKSK FGFVNFEN+DDAARAVE+LNG KFDDKEWYVG+AQKKSERE EL
Sbjct: 241 ITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 289 KHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348
+ ++EQN+KEAADKFQ +NLY+KNLD SI DEKLK++FSPFG++TS KVMRDP+G S+GS
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS 360
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVA 408
GFVAF+TPEEA+ A+ +++GKM+ SKPLYVA+AQRKEDRR RLQAQF+Q+RPVAM +V
Sbjct: 361 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVG 420
Query: 409 PRMPMYPPGGPGIGQQIFYGQGPPAMIPPQPGFGYQQQLVPGMRPGGGPMQNFFVPI 465
PRMP+YPPGGPGIGQQ+FYGQ PPAMIPPQPG+GYQQQLVPGMRPGGGP+ +FF+P+
Sbjct: 421 PRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPM 477
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust.
Identities = 281/477 (58%), Positives = 344/477 (72%), Gaps = 38/477 (7%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLY GDL+ VT++ L+DLF + VVSVRVCRD RRSLGY Y+NFSN +A RA+E
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAME 107
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+TPL +PIR+M S+RDPS R SG GNIFIKNLD +ID+KAL +TFS+FG ILSCKV
Sbjct: 108 ALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKV 167
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER--DTEINKSK 201
A D+ G+SKGYGFVQF+ EESAQ AI+KLNGML+NDKQV+VGHF+R+QER D +
Sbjct: 168 AMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + E++L+K+FG++G I+SAVVMRD G S+CFGFVNFE ++ AA AVE
Sbjct: 228 FTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG D YVG+AQKKSERE EL+ +FEQ +K QGANLY+KNLDDS+DDEK
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEK 347
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+ KPLY+ALA
Sbjct: 348 LKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 382 QRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPGIG-------------QQIFYG 428
QRKEDRRA LQA F+Q+R AP GP G Q ++ G
Sbjct: 408 QRKEDRRAHLQALFSQIR--------AP--------GPMSGFHHPPGGPMPGPPQHMYVG 451
Query: 429 QGPPAMIPPQP-GFGYQQQLVPGMRPGGGPMQNFFVPIA---QPGQQGQRPSGRRAA 481
Q +M+P QP G+G+Q Q +PGMRPG GP NF VP QP Q G R RR A
Sbjct: 452 QNGASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQP-QTGPRMGFRRGA 506
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 526 bits (1355), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/468 (57%), Positives = 347/468 (74%), Gaps = 12/468 (2%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
+SLYVGDL+ +V +S L DLFNQ+ V ++RVCRDL T RSLGY YVNF+N ++A+RA+E
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAME 117
Query: 84 MLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKV 143
LN+ P+ +PIR+M S+RDPS R SG GN+FIKNLD +ID+KAL++TFS+FG ILSCKV
Sbjct: 118 SLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKV 177
Query: 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKS--K 201
A D+ G+SKGYGFVQF+ EE+AQ AI+KLNGMLLNDKQV+VGHF+R+Q+R + +
Sbjct: 178 AMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPS 237
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
FTNVYVKNL + T+++L+K+FG+YG I+SAVVM+D G S+ FGFVNF + + AA AVE
Sbjct: 238 FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVE 297
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG + YVG+AQKKS+RE EL+ +FEQ +K QG+NLY+KNLDDS++DEK
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
LK++FS +G++TSCKVM + G+SRG GFVA+S PEEA A+ EMNGKM+ KPLYVALA
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
Query: 382 QRKEDRRARLQAQFAQMRPVAMASTVAPRMP---MYPPGGP--GIGQQIFYGQGPPAMIP 436
QRKE+R+A LQ+ F Q+R S V M +PPGGP G +F G ++P
Sbjct: 418 QRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVP 477
Query: 437 PQP-GFGYQQQLVPGMRPGGGPMQNFFV--PIAQPGQQGQRPSGRRAA 481
QP G+GYQ Q +PGMRPG GP NF + P+ + Q G R RR A
Sbjct: 478 SQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPRVGFRRGA 524
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/384 (59%), Positives = 296/384 (77%), Gaps = 4/384 (1%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A A+ + SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRRSLGY YVNF
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + GKPIR+M+S RDPSLRKSG GN+FIKNLDK+ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKV D NG SKGY FV F+ +E+A KAIEK+NGMLLND++V+VG F ++ER+
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 196 EI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTNVY+KN E +E L++ F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+DA +AVE +NGK+ K +VG+AQKK ER+ ELK +FEQ +E ++QG NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD+IDDEKL++ FSPFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ 397
KPLYVALAQRKE+R+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M AA + A+LY+ +L + + L + FSP G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/406 (56%), Positives = 304/406 (74%), Gaps = 8/406 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPG 420
PLYVALAQRKE+R+A L Q+ Q MAS A P+ P P
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQR----MASVRAVPNPVINPYQPA 403
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 470 bits (1210), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/406 (56%), Positives = 304/406 (74%), Gaps = 8/406 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPG 420
PLYVALAQRKE+R+A L Q+ Q MAS A P+ P P
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQR----MASVRAVPNPVINPYQPA 403
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/406 (56%), Positives = 303/406 (74%), Gaps = 8/406 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPG 420
PLYVALAQRKE+R+A L Q+ Q MAS A P+ P P
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQR----MASVRAVPNPVINPYQPA 403
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/406 (56%), Positives = 303/406 (74%), Gaps = 8/406 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPG 420
PLYVALAQRKE+R+A L Q+ Q MAS A P+ P P
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQR----MASVRAVPNPVINPYQPA 403
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/458 (52%), Positives = 318/458 (69%), Gaps = 26/458 (5%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L++ FG+YG S VM D GKS+ FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ F+PFGSITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPR---MPMYPPGG--------PGIGQ 423
PLYVALAQRKE+R+A L Q+ Q MAS P P PP P +
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQR----MASVRVPNPVINPYQPPPSSYFMAAIPPAQNR 417
Query: 424 QIFYGQGPPAMIPPQPGFGYQQQLVPGMRPGGGPMQNF 461
+Y G A + P P + Q G RP P QN
Sbjct: 418 AAYYPPGQIAQLRPSPRWTAQ-----GARP--HPFQNM 448
Score = 179 bits (454), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 171/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS +V D + +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK+ F +G+ S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GFV+F E+A +A+ +MNGK + K ++V AQ+K +R+ L+ +F QM+
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/406 (56%), Positives = 302/406 (74%), Gaps = 8/406 (1%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL + T++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + GKP+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AIEK+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK+ + K+ YVG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPG 420
PLYVALAQRKE+R+A L Q+ Q MAS A P+ P P
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQR----MASVRAVPNPVINPYQPA 403
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 170/298 (57%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ K V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA+E +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR---GSGFVA 352
M +A + A+LY+ +L + L + FSP G I S +V RD I+R G +V
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRD--MITRRSLGYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F P +A RAL MN ++ KP+ + +QR R
Sbjct: 59 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 246/476 (51%), Positives = 332/476 (69%), Gaps = 29/476 (6%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
NA+ TSLYVG+L+ +VT++ L+++F+ +G V S+RVCRD TRRSLGY YVNF NA
Sbjct: 40 NADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAA 99
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RA+E LN++ + +P R+M+S RDP+LR++G GNIFIKNLD ID+KALHDTF+AFG
Sbjct: 100 DGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFG 159
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVAT+ G S GYGFV ++ E+A+ AI+ +NGMLLNDK+VYVGH + ++ER +
Sbjct: 160 NILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRKERQAK 218
Query: 197 INKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
I +++ FTNVY KN+ T+++ +K F ++G ITS V+ RD DGKSK FGFVNFE+ +
Sbjct: 219 IEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHN 278
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
+A +AV+ L+ F ++ +V +AQKKSERE EL+ +E E KFQG NLY+KN+
Sbjct: 279 EAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIP 338
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
+S DDE+L++ F+PFG+ITSCK+MR PSG+SRG GFV +S PEEA++A+ EMNGKM+ ++
Sbjct: 339 ESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNR 398
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPGIGQQIFYGQGPPAM 434
PLYVALAQRK+ RR +L+AQ Q + + A + YP GPG ++Y Q P
Sbjct: 399 PLYVALAQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYP--GPG----MYYPQ--PGA 450
Query: 435 IPPQPGFGYQQQLVP-------GMRPGGGPMQNFFVPIAQPGQ--QGQRPSGRRAA 481
P QPG +VP GM P G PM P QPGQ G P G R A
Sbjct: 451 FPGQPG-----GMVPRPRYAPAGMMPQGMPM----APYGQPGQFPAGMMPQGYRPA 497
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 466 bits (1198), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/458 (52%), Positives = 318/458 (69%), Gaps = 26/458 (5%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRRSLGY YVNF
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+A RAL+ +NF + G+P+R+M+S RDPSLRKSG GNIFIKNLDK+ID+KAL+DTFSAFG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKV D NG SKGYGFV F+ +E+A++AI+K+NGMLLND++V+VG F ++ER+ E
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 197 I--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ +FTNVY+KN + +E L++ FG+YG S VM D +GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA +AV+ +NGK + K +VG+AQKK ER+ ELK +FEQ ++ ++QG NLY+KNLD
Sbjct: 243 DAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
D IDDE+L++ F PFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +K
Sbjct: 303 DGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPR---MPMYPPGG--------PGIGQ 423
PLYVALAQRKE+R+A L Q+ Q MAS P P PP P +
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ----RMASVRVPNPVINPYQPPPSSYFMAAIPPAQNR 417
Query: 424 QIFYGQGPPAMIPPQPGFGYQQQLVPGMRPGGGPMQNF 461
+Y G A + P P + Q G RP P QN
Sbjct: 418 AAYYPPGQIAQLRPSPRWTAQ-----GARP--HPFQNM 448
Score = 179 bits (454), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 173/298 (58%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + + L++ FS G ILS +V D+ +S GY +V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
A++A++ +N ++ + V + +RD + KS N+++KNL +S + L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMW----SQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+F +G I S V+ D +G SK +GFV+FE + A RA++ +NG +D++ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL + A +F N+YIKN D ++DE+LK++F +G S KVM D
Sbjct: 177 KEREAELGAR--------AKEF--TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
+G S+G GFV+F E+A +A+ EMNGK + K ++V AQ+K +R+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M +A + A+LY+ +L + + L + FSP G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
P +A RAL MN ++ +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 464 bits (1194), Expect = e-130, Method: Compositional matrix adjust.
Identities = 258/536 (48%), Positives = 334/536 (62%), Gaps = 80/536 (14%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 45 SANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 104
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 105 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 164
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN+ + T+E+ +K F ++G ITSA + RD +GKS+ FGFVNF D
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 344
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPS-------------------------------- 342
D +DDEKL++LFSPFG+ITS KVMRD
Sbjct: 345 DDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKE 404
Query: 343 -------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ RR+
Sbjct: 405 SEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRS 464
Query: 390 RLQAQFAQMRPVAMASTVAPR-MPMYPPGGPGIGQQIFYGQGPPAMIP----------PQ 438
+L+A + A MP P + +FYG G IP PQ
Sbjct: 465 QLEASIQARNTIRQQQAAAAAGMPQ-----PYMQPAVFYGPGQQGFIPAGQRGGMPFAPQ 519
Query: 439 PGFGYQQQLVPGMRPGGGPMQNFFVPIAQPGQQGQRPSGRRAAGMQQNQQHVPMMQ 494
PG +V G+ PGG P Q P PGQQG R GM NQQ P Q
Sbjct: 520 PG------MVMGI-PGGRPGQ---YPGPFPGQQGGR-------GMGPNQQIPPNFQ 558
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 163/297 (54%), Gaps = 15/297 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+R+ +FE+ K N+YIKN+D + DE+ +++F FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GFV FST + A A+ EMN K + + LYV AQ+K +R L+ Q+ R
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 258/533 (48%), Positives = 335/533 (62%), Gaps = 72/533 (13%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
+A+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 45 SASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 104
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 105 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 164
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 165 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 224
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN+ + T+E+ +K F ++G ITSA + RD +GKS+ FGFVNF D
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 344
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPS-------------------------------- 342
D +DDEKL++LFSPFG+ITS KVMRD
Sbjct: 345 DDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKP 404
Query: 343 ---------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+ R
Sbjct: 405 KESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 464
Query: 388 RARLQAQFAQMRPVAMASTVA----PRMPMYPPGGPGIGQQIFYGQGPPAMIP--PQPGF 441
R++L+A + A P+ M P G GQQ F G +P PQPG
Sbjct: 465 RSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPAGQRGGMPFAPQPG- 523
Query: 442 GYQQQLVPGMRPGGGPMQNFFVPIAQPGQQGQRPSGRRAAGMQQNQQHVPMMQ 494
+V G+ PGG P Q P PGQQG R GM NQQ P Q
Sbjct: 524 -----MVMGI-PGGRPGQ---YPGPFPGQQGGR-------GMGPNQQIPPNFQ 560
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 163/297 (54%), Gaps = 15/297 (5%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
PS + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 104 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDT 159
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 160 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 219
Query: 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS 342
+R+ +FE+ K N+YIKN+D + DE+ +++F FG ITS + RD
Sbjct: 220 DRQ----SKFEEM------KANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE 269
Query: 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G SRG GFV FST + A A+ EMN K + + LYV AQ+K +R L+ Q+ R
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAAR 326
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 247/500 (49%), Positives = 330/500 (66%), Gaps = 29/500 (5%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LFN +G V S+RVCRD TRRSLGY YVNF N ++ +AL
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN+T + G+P R+M+S RDPSLRK G GN+FIKNLD AID+KALHDTFSAFG ILSCK
Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK 198
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G +KGYGFV FD+ ESA AIE +NGMLLNDK+VYVGH + ++ER +++ K+
Sbjct: 199 VAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 258
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KNL TE++ FG++G ITS +++D + K + FGFVN+ N + A +AV
Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K++ K+ YVG+AQKK ERE EL+ ++EQ E +K+QG NL+IKNL D +DDE
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDE 378
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+LK FS FG+ITS K+M D G S+G GFV ++TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 379 RLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVAL 438
Query: 381 AQRKEDRRARLQA------QFAQMRPVAMASTV------APRMPMYPPGGPGIGQQIFYG 428
AQRKE RR++L+A QF + VA A+ + A +Y PGG I + G
Sbjct: 439 AQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAV-NG 497
Query: 429 QGPPAMIPPQPGFGYQQQLVPGMR---PGGGPMQNFFVPIAQPGQQGQRPSGRRAAGMQQ 485
+G P + PG + PGM P GGP + PG + P + M
Sbjct: 498 RGMPMV----PGHNGPMPMYPGMPTQFPAGGPAPGY------PGMNARGPVPAQGRPMMM 547
Query: 486 NQQHVPMMQPQVGDIVSLVP 505
VP P + V VP
Sbjct: 548 -PGSVPSAGPAEAEAVPAVP 566
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 161/292 (55%), Gaps = 19/292 (6%)
Query: 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAA 79
+ GT ++++ +L+ + + L+D F+ G+++S +V D + GYG+V+F + + A
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESAN 222
Query: 80 RALEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFS 133
A+E +N LN K + V + S R+ + K+ N++IKNLD I + D F
Sbjct: 223 AAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFG 282
Query: 134 AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER 193
FG I S + D N + +G+GFV + N E AQKA+++LN K++YVG +K ER
Sbjct: 283 QFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342
Query: 194 DTEI------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
+ E+ NK + N+++KNL + +E L+ F +GTITSA +M D GK
Sbjct: 343 EEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK 402
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE 293
SK FGFV + ++A +AV +N + K YV AQ+K R +L+ Q +
Sbjct: 403 SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQ 454
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/493 (50%), Positives = 321/493 (65%), Gaps = 66/493 (13%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++N + RAL
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+AQ AI+ +NGMLLNDK+V+VGH + K++R ++ K+
Sbjct: 174 VAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 233
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTNVYVKN+ + TTEE+ + F ++G ITSA + RD + GKS+ FGFVNF + D+AA A
Sbjct: 234 NFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAA 293
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
VEALN K F ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLYIKNL D IDD
Sbjct: 294 VEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDD 353
Query: 320 EKLKQLFSPFGSITSCKVMRD--------------------------------------- 340
EKL++LFS +G+ITS KVMRD
Sbjct: 354 EKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKD 413
Query: 341 --------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQRK+
Sbjct: 414 NKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDV 473
Query: 387 RRARLQAQFAQMRPVAMASTVAPR-MPMYPPGGPGIGQQIFYGQGPPAMIPPQP-GFGYQ 444
RR++L+A + A MP P + +FYG G IP Q G +Q
Sbjct: 474 RRSQLEASIQARNTIRQQQAAAAAGMPQ-----PFMQPAVFYGPGQQNFIPNQRGGMPFQ 528
Query: 445 Q--QLVPGMRPGG 455
Q ++PGM PGG
Sbjct: 529 QPGMVIPGM-PGG 540
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 52/153 (33%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 62
A+++ +LY+ +L ++ D +L +LF+ G + S +V RD +
Sbjct: 334 ASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKE 393
Query: 63 -------------------------------------RSLGYGYVNFSNAQEAARALEML 85
+S G+G+V FS+ EA++A+ +
Sbjct: 394 PETKEEEPKDEAGDNAENKDNKENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEM 453
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKN 118
N ++GKP+ V + R R +I +N
Sbjct: 454 NQRMVHGKPLYVALAQRKDVRRSQLEASIQARN 486
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust.
Identities = 253/544 (46%), Positives = 333/544 (61%), Gaps = 88/544 (16%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N NQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 44 NNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 103
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 104 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 163
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 164 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 223
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
+ K+ FTN+Y+KN+ TEE+ +K F ++G ITSA + RD +GKS+ FGFVN+ +
Sbjct: 224 FDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHE 283
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ ++ K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 284 SAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 343
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPS-------------------------------- 342
D +DDEKL++LF P+G+ITS KVMRD +
Sbjct: 344 DDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEE 403
Query: 343 ---------------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALA
Sbjct: 404 KPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALA 463
Query: 382 QRKEDRRARLQAQFAQMRPVAMASTVAPR-MPMYPPGGPGIGQQIFYGQGPPAMIP---- 436
QRK+ RR++L+A + A MP P + +FYG G IP
Sbjct: 464 QRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQ-----PYMQPAVFYGPGQQGFIPAGQR 518
Query: 437 ------PQPGFGYQQQLVPGMRPGGGPMQNFFVPIAQPGQQGQRPSGRRAAGMQQNQQHV 490
PQPG +V G+ PGG P Q P PGQQG R GM NQQ
Sbjct: 519 GGMPFAPQPG------MVMGI-PGGRPGQ---YPGPFPGQQGGR-------GMGPNQQMP 561
Query: 491 PMMQ 494
P Q
Sbjct: 562 PNFQ 565
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/446 (51%), Positives = 312/446 (69%), Gaps = 25/446 (5%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A+ + + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF L G+PIR+M+S RDP LRKSG GNIFIKNL+ +ID+KAL+DTFS F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D +G S+G+GFV F+ E+AQ+AI +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E+ +FTN+YVKNL E+ LQ F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + Y G+AQK+ ER+ ELK +FEQ ++ ++QG NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DDSIDD+KL++ FSP+G ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQ----MRPVAM---------ASTVAPRMPMYPPGGPG 420
KPLYVALAQRKE+R+A L Q+ Q MR ++ +S P MP P
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPP----- 415
Query: 421 IGQQIFYGQGPPAMIPPQPGFGYQQQ 446
Q +YG GP + P QP + Q
Sbjct: 416 -AQAAYYGCGP--VTPTQPAPRWTSQ 438
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFS 354
M + + A+LY+ +L + + L + FSP G I S +V RD + S G ++ F
Sbjct: 1 MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ 60
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQR 383
P +A RAL MN +M+ +P+ + +QR
Sbjct: 61 QPADAERALDTMNFEMLKGQPIRIMWSQR 89
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 249/533 (46%), Positives = 327/533 (61%), Gaps = 86/533 (16%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N + RAL
Sbjct: 47 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 106
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 107 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCK 166
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++ K+
Sbjct: 167 VAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKA 226
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY+KNL + +EE+ ++ F ++G ITSA + RD +GKS+ FGFVN+ D A AV
Sbjct: 227 NFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAV 286
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D IDDE
Sbjct: 287 DEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 346
Query: 321 KLKQLFSPFGSITSCKVMRDPS-------------------------------------- 342
KL+++F+P+G+ITS KVMRD +
Sbjct: 347 KLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDD 406
Query: 343 -------------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
G S+G GFV FS+P+EAS+A+ EMN +M+ KPLYVALAQRK+ RR+
Sbjct: 407 QDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRS 466
Query: 390 RLQAQFAQMRPVAMASTVAPR-MPMYPPGGPGIGQQIFYGQGPPAMIP----------PQ 438
+L+A + A MP P + +FYG G IP PQ
Sbjct: 467 QLEASIQARNTIRQQQAAAAAGMPQ-----PYMQPAVFYGPGQQGFIPGGQRGGLPFAPQ 521
Query: 439 PGFGYQQQLVPGMRPGGGPMQNFFVPIAQPGQQGQRPSGRRAAGMQQNQQHVP 491
PG VPG RPG P PGQQG R GM NQQ P
Sbjct: 522 PGM---MMGVPGGRPGQ-------YPGPFPGQQGGR-------GMGPNQQIPP 557
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/441 (51%), Positives = 308/441 (69%), Gaps = 17/441 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG+ILSCK
Sbjct: 105 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
V TD NG+S+G+ FV + E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 165 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 224
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN+ T+ + + +G S + RD G SK FGFVN+EN + A +AV
Sbjct: 225 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAV 284
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ Y G+AQ KSERE ELK E+ E K G NLY+KNLDD DD+
Sbjct: 285 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDD 344
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F FG+ITS KVMRD SG+SRG GFV +S+P+EA++A+ EMNGKM+ +KPLYVAL
Sbjct: 345 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 404
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPGIGQQIFYGQGPPAMIPPQPG 440
AQRK+ RR L++Q AQ M Y G PG+ Q + GQ P PP PG
Sbjct: 405 AQRKDVRRQALESQIAQRAQQRM---------QYGAGFPGM--QGYMGQ-PMYGYPPMPG 452
Query: 441 FGYQQQLVPGMRPGGGPMQNF 461
+G Q +PGM P GPM +
Sbjct: 453 YG---QPMPGMPPVRGPMMGY 470
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/441 (51%), Positives = 308/441 (69%), Gaps = 17/441 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L+++FN +G V S+RVCRD TRRSLGY YVN+ NA + RAL
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+ R+M+S RDP+LRK+G GNIFIKNLD++ID+KALHDTF+AFG+ILSCK
Sbjct: 105 EHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCK 164
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
V TD NG+S+G+ FV + E+A AI+ +NGMLLNDK+VYVGH + K+ER +++ ++
Sbjct: 165 VGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRA 224
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+FTNVY+KN+ T+ + + +G S + RD G SK FGFVN+EN + A +AV
Sbjct: 225 QFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAV 284
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + K+ Y G+AQ KSERE ELK E+ E K G NLY+KNLDD DD+
Sbjct: 285 DELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDD 344
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
+L+ F FG+ITS KVMRD SG+SRG GFV +S+P+EA++A+ EMNGKM+ +KPLYVAL
Sbjct: 345 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 404
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPGIGQQIFYGQGPPAMIPPQPG 440
AQRK+ RR L++Q AQ M Y G PG+ Q + GQ P PP PG
Sbjct: 405 AQRKDVRRQALESQIAQRAQQRM---------QYGAGFPGM--QGYMGQ-PMYGYPPMPG 452
Query: 441 FGYQQQLVPGMRPGGGPMQNF 461
+G Q +PGM P GPM +
Sbjct: 453 YG---QPMPGMPPVRGPMMGY 470
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/380 (57%), Positives = 290/380 (76%), Gaps = 5/380 (1%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVG+LE V+++ LYD+F+ +G V S+RVCRD T SLGY YVNF + + +A+E
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
LN+T + GKP R+M+S RDPSLRK G+GNI+IKNL AID+K+LH+TFS FGNILSCKVA
Sbjct: 99 LNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVA 158
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKF 202
TD NG S+G+GFV F+NE A+ AIE ++GML+ND++VYV + K++R +++ K+KF
Sbjct: 159 TDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKF 218
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN+ + T++E+ ++ FG+YG ITSAV+ +D +GK + FGFVNFE+ AA+AV+
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDE 278
Query: 263 LNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKL 322
LN +F ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDDSIDDEKL
Sbjct: 279 LNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKL 338
Query: 323 KQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
K+ F+PFG+ITS KVMRD +G SRG GFV FSTPEEA++A+ E N ++V KPLYVA+AQ
Sbjct: 339 KEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 383 RKEDRRARLQAQFA---QMR 399
RKE RR +L Q QMR
Sbjct: 399 RKEVRRNQLAQQIQARNQMR 418
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 17/202 (8%)
Query: 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNF 250
E +T ++ ++YV L + +E L F G+++S V RD S + +VNF
Sbjct: 27 ESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNF 86
Query: 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYI 310
+ + +A+E LN K + S+R+ L+ K N+YI
Sbjct: 87 HDHEAGPKAIEQLNYTLIKGKPCRI----MWSQRDPSLR------------KKGSGNIYI 130
Query: 311 KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM 370
KNL +ID++ L + FS FG+I SCKV D +G+SRG GFV F +A A+ ++G +
Sbjct: 131 KNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
Query: 371 VVSKPLYVALAQRKEDRRARLQ 392
+ + +YVAL K+DR+++L+
Sbjct: 191 MNDQEVYVALHVSKKDRQSKLE 212
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 17/190 (8%)
Query: 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALE 83
T++YV +++ + + +LF + G++ S + +D S + G+G+VNF + AA+A++
Sbjct: 219 TNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKD-SEGKLRGFGFVNFEDHAAAAKAVD 277
Query: 84 MLNFTPLNGKPIRV----------------MYSHRDPSLRKSGAGNIFIKNLDKAIDHKA 127
LN G+ + V + R L K N+F+KNLD +ID +
Sbjct: 278 ELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEK 337
Query: 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187
L + F+ FG I S KV D G S+G+GFV F E A KAI + N ++ K +YV
Sbjct: 338 LKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 188 LRKQERDTEI 197
RK+ R ++
Sbjct: 398 QRKEVRRNQL 407
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/453 (49%), Positives = 312/453 (68%), Gaps = 17/453 (3%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLYVGDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y
Sbjct: 2 NATGAG-----YPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D +G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGF
Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VN+ N ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG N
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDD++L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM-------PMYPPGGPG 420
G++V +KPLYVALAQRKE+R+A L Q+ Q R M + P + + P P
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAILTNQYMQ-RLATMRAMPGPLLGSFQQPANYFLPAMPQ 413
Query: 421 IGQQIFYGQGPPAMIPPQPGFGYQQQLVPGMRP 453
+ FY P A + P + Q P +P
Sbjct: 414 PPNRTFYSPNPVAPVRQAPQWTSHQSRPPQYQP 446
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 220/447 (49%), Positives = 310/447 (69%), Gaps = 12/447 (2%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A ++ SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSLGY Y+NF
Sbjct: 3 ATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
+A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD +ID+KAL+DTFSAF
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G+ILSCKV D G S+GYGFV F+ +E+A +AI+ +NGMLLND++V+VGHF ++ER+
Sbjct: 123 GDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 196 EINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNH 241
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG NLY+KNL
Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373
DD IDD++L++ FSP+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 374 KPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM-------PMYPPGGPGIGQQIF 426
KPLYVALAQRKE+R+A L Q+ Q R M + P + + P P + F
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ-RLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAF 419
Query: 427 YGQGPPAMIPPQPGFGYQQQLVPGMRP 453
Y P A + P P + Q P +P
Sbjct: 420 YSPNPVAPVRPAPQWASHQSRPPQYQP 446
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 248/537 (46%), Positives = 324/537 (60%), Gaps = 76/537 (14%)
Query: 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75
A +Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN+++
Sbjct: 34 ATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDT 93
Query: 76 QEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAF 135
RAL+ LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AF
Sbjct: 94 AHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
GNILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R +
Sbjct: 154 GNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 213
Query: 196 EIN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253
+ K+ FTN+Y+KN+ +E+ +K F ++G ITSA + RD +GKS+ FGFVNF
Sbjct: 214 KFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTH 273
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNL 313
+ A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 274 ESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNL 333
Query: 314 DDSIDDEKLKQLFSPFGSITSCKVMRD--------------------------------- 340
D +DD+KL++LF P+G+ITS KVMRD
Sbjct: 334 TDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAA 393
Query: 341 ------------------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
P G S+G GFV FS+P+EAS+A+ EMN +MV KPLYVALAQ
Sbjct: 394 EEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 453
Query: 383 RKEDRRARLQAQFAQMRPVAMASTVAPRMP----MYPPGGPGIGQQIFY-GQGPPAMIPP 437
RK+ RR++L+A + A M P G GQQ F G M PP
Sbjct: 454 RKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIPGAQRGGMFPP 513
Query: 438 QPGFGYQQQLVPGMRPGGGPMQNFFVPIAQPGQQGQRPSGRRAAGMQQNQQHVPMMQ 494
QPG PG PG P PGQQG R G+ NQQ P Q
Sbjct: 514 QPGMMMGMPGRPGQYPG---------PF--PGQQGGR-------GVGPNQQIPPNFQ 552
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 171/318 (53%), Gaps = 15/318 (4%)
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E N TP N V + + + ++++ LD ++ L++ FS+ G + S +
Sbjct: 13 ENTNGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 72
Query: 143 VATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201
V D + +S GY +V +++ ++A+++LN L+ K + +RD + K+
Sbjct: 73 VCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTG 128
Query: 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261
NV++KNL + + L +F +G I S V +D G SK +GFV++E ++ A A++
Sbjct: 129 QGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIK 188
Query: 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
+NG +DK+ +VG K +R+ +FE+ K N+YIKN+D ++DE+
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQ----SKFEEM------KANFTNIYIKNIDPEVEDEE 238
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
++LF FG ITS + RD G SRG GFV FST E A A+ EMN K V S+ LYV A
Sbjct: 239 FRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298
Query: 382 QRKEDRRARLQAQFAQMR 399
Q+K +R L+ Q+ R
Sbjct: 299 QKKHEREEELRKQYEAAR 316
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/461 (50%), Positives = 319/461 (69%), Gaps = 14/461 (3%)
Query: 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLG 66
Q Q G + + + + SLYVGDLE +V+++ LYD+F+ +G V S+RVCRD T+ SLG
Sbjct: 21 QKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLG 80
Query: 67 YGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHK 126
Y YVNF++ + +A+E LN+TP+ G+ R+M+S RDPSLRK G+GNIFIKNL ID+K
Sbjct: 81 YAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNK 140
Query: 127 ALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186
AL+DTFS FG+ILS K+ATD NG+SKG+GFV F+ E +A++AI+ LNGMLLN +++YV
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 187 FLRKQERDTEINKSK--FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244
L ++ERD+++ ++K +TN+YVKN++ TT+E Q+ F ++G I SA + +D DGK K
Sbjct: 201 HLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Query: 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304
FGFVN+E +DA +AVEALN + + ++ YVG+AQKK+ER LK Q+E E K+Q
Sbjct: 261 FGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 320
Query: 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364
G NL++KNLDDS+DDEKL++ F+P+G+ITS KVMR +G S+G GFV FSTPEEA++A+
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAIT 380
Query: 365 EMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPG-IGQ 423
E N ++V KPLYVA+AQRK+ RR++L AQ Q R G PG
Sbjct: 381 EKNQQIVAGKPLYVAIAQRKDVRRSQL-AQQIQARNQMRYQQATAAAAAAAAGMPGQFMP 439
Query: 424 QIFYGQGPPAMIP---PQPGFGYQQQLVP--GMRPGGGPMQ 459
+FYG PP +P P P QQ+ P GM G P Q
Sbjct: 440 PMFYGVMPPRGVPFNGPNP-----QQMNPMGGMPKNGMPPQ 475
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/453 (48%), Positives = 309/453 (68%), Gaps = 17/453 (3%)
Query: 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGY 69
N G G + SLY+GDL +VT++ LY+ F+ G ++S+RVCRD++TRRSL Y Y
Sbjct: 2 NATGAG-----YPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAY 56
Query: 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALH 129
+NF +A RAL+ +NF + G+PIR+M+S RDP LRKSG GN+FIKNLD++ID+KAL+
Sbjct: 57 INFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALY 116
Query: 130 DTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189
DTFSAFGNILSCKV D +G S+GYGFV F+ E+A +AI+ +NGMLLND++V+VGHF
Sbjct: 117 DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 190 KQERDTEINKS--KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247
++ER+ E +FTNVY+KN E ++ L++ F +G S VM D G+S+ FGF
Sbjct: 176 RRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGF 235
Query: 248 VNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGAN 307
VN+ N ++A +AV +NGK+ + + YVG+AQK+ ER+ ELK +FEQ +E +++QG N
Sbjct: 236 VNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN 295
Query: 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367
LY+KNLDD IDD++L++ F P+G+ITS KVM + G S+G GFV FS+PEEA++A+ EMN
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 368 GKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRM-------PMYPPGGPG 420
G++V +KPLYVALAQRKE+R+A L Q+ Q R M + P + + P
Sbjct: 355 GRIVSTKPLYVALAQRKEERKAILTNQYMQ-RLATMRAMPGPLLGSFQQPANYFLSAMPQ 413
Query: 421 IGQQIFYGQGPPAMIPPQPGFGYQQQLVPGMRP 453
+ FY P A + P P + Q P +P
Sbjct: 414 PPNRTFYSPNPVAPVRPAPQWASHQSRPPQYQP 446
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 243/517 (47%), Positives = 327/517 (63%), Gaps = 61/517 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+GAGNIFIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 119 EELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCK 178
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D +G SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ K+
Sbjct: 179 VAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 238
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVYVKN++ T+E+ ++ F ++G +TS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 239 NFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAV 298
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LNGK F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D +DD+
Sbjct: 299 DELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDD 358
Query: 321 KLKQLFSPFGSITSCKVMRDP--------------------------------------- 341
KL+ +FS +G ITS KVMRD
Sbjct: 359 KLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGD 418
Query: 342 --SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
G S+G GFV FS P++A++A+ EMN +MV KPLYVALAQRK+ R+++L+A
Sbjct: 419 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARN 478
Query: 400 PVAMASTVAPRMPMYPPGGPGIGQQIFYGQGPPAMIPPQPGFGYQQQLVPGMRPGGGPM- 458
+ M A G+ QQ Y Q P QPGF PG R G P
Sbjct: 479 QLRMQQAAAQA---------GMPQQ--YMQAPVYYAGQQPGF----MPAPGGR--GVPFP 521
Query: 459 QNFFVPIAQPGQQGQRPSGRRAAGMQQNQQHVPMMQP 495
Q VP Q G+ GQ P + G QQ PM P
Sbjct: 522 QGGIVPGVQGGRPGQYPYQQGGRGGVPPQQMPPMGYP 558
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 41/132 (31%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 62
AN++ +LY+ +L +V D +L +F++ G + S +V RD
Sbjct: 338 ANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKE 397
Query: 63 -------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97
+S G+G+V FSN +A +A+ +N ++GKP+ V
Sbjct: 398 GETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYV 457
Query: 98 MYSHRDPSLRKS 109
+ R +RKS
Sbjct: 458 ALAQRK-DVRKS 468
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/470 (49%), Positives = 314/470 (66%), Gaps = 15/470 (3%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
SLYVG+L+ N+T++ LYD+F+ +G + S+RVCRD T+ SLGY YVN+++ + +A+
Sbjct: 49 NASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAI 108
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN+ +NG+P R+M+S RDP++RK G+GNIFIKNL AID+KALH+TFS FG +LSCK
Sbjct: 109 QELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCK 168
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK- 201
VA D NG S+G+GFV F E A+ AIE +NGML+N +VYV + K++R +++ ++K
Sbjct: 169 VALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKA 228
Query: 202 -FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ TT+E+ ++ F +YG I SA + +D +GK K FGFVNF + + AA+AV
Sbjct: 229 NFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK+F + YVG+AQKK ER ELK Q+EQ E KFQG NL+IKNLDDSIDDE
Sbjct: 289 EELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDE 348
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KLK+ F+P+G+ITS +VMRD G S+G GFV FS+PEEA++A+ E N ++V KPLYVA+
Sbjct: 349 KLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAI 408
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPG-IGQQIFYGQGPPAMIP-PQ 438
AQRK+ RR++L Q + + G PG Q+FYG P P P
Sbjct: 409 AQRKDVRRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPGQYMPQMFYGVMAPRGFPGPN 468
Query: 439 PGFGYQQQLVPGMRPGGGPMQNFFVPIAQPGQQGQRPSGRRAAGM-QQNQ 487
PG G G +N VP P Q RP+G GM QNQ
Sbjct: 469 PGMNGPM--------GAGIPKNGMVP--PPQQFAGRPNGPMYQGMPPQNQ 508
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 441 bits (1133), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/374 (58%), Positives = 284/374 (75%), Gaps = 3/374 (0%)
Query: 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84
SLYVGDL +V +S L+D F+ G V+S+RVCRD+ TRRSLGY YVNF +A RAL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 85 LNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144
+NF + KPIR+M+S RDPSLR+SG GN+FIKNLD+AID+KA++DTFSAFGNILSCKVA
Sbjct: 63 MNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVA 122
Query: 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI-NKSK-F 202
TD G SKGYGFV F+ EE+A +I+K+NGMLLN K+VYVG F+ ++ER+ E+ K+K F
Sbjct: 123 TDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLF 182
Query: 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262
TNVYVKN +E +E L++ F YG ITS VM DGKSK FGFV FE ++ A AV+A
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242
Query: 263 LNGKKF-DDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEK 321
LNGK + K YV +AQKK+ER+ ELK +FE+ ++ + G NLY+KNLDD+IDD++
Sbjct: 243 LNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDR 302
Query: 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381
L+ FSP+G+ITS KVM D G S+G GFV F+ EA+ A+ E+NG++V SKPLYVALA
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALA 362
Query: 382 QRKEDRRARLQAQF 395
QRKE+R+A L +Q+
Sbjct: 363 QRKEERKAHLASQY 376
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 163/290 (56%), Gaps = 16/290 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + ++ L D FS+ G +LS +V D + +S GY +V F A++A++
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N L+ +K + + +RD + +S NV++KNL + + + +F +G I
Sbjct: 62 TMNFDLVRNKPIRIMW----SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNIL 117
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S V D G SK +GFV+FE + A +++ +NG + K+ YVGK + ERE EL
Sbjct: 118 SCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELG- 176
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
E A F N+Y+KN + DDEKLK+ F P+G ITS KVM G S+G GF
Sbjct: 177 -------EKAKLF--TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGF 227
Query: 351 VAFSTPEEASRALLEMNGK-MVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
VAF T E A A+ +NGK M K LYVA AQ+K +R+ L+ +F +++
Sbjct: 228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELK 277
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 162/295 (54%), Gaps = 22/295 (7%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + +YD F+ G ++S +V D S GYG+V+F + A +
Sbjct: 88 GVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTS 146
Query: 82 LEMLNFTPLNGKPIRV----MYSHRDPSLRKSGA--GNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LNGK + V R+ L + N+++KN + D + L + F +
Sbjct: 147 IDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPY 206
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLND-KQVYVGHFLRKQERD 194
G I S KV + +G+SKG+GFV F+ E+A+ A++ LNG + + K +YV +K ER
Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQ 266
Query: 195 TEINKSKF-------------TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGK 241
E+ K KF N+YVKNL ++ ++ L+ +F YG ITSA VM D +G+
Sbjct: 267 QEL-KRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGR 325
Query: 242 SKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNM 296
SK FGFV F + +A AV LNG+ K YV AQ+K ER+ L Q+ ++M
Sbjct: 326 SKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/457 (50%), Positives = 313/457 (68%), Gaps = 28/457 (6%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 66 SASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAI 125
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+TP+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILS K
Sbjct: 126 EELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVK 185
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ EE+AQ AIE +NGMLLND++VYVG + K++R++++ K+
Sbjct: 186 VATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKA 245
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
+TN+YVKN+ + TE++ ++ F +G ITS + +D +GKSK FGFVNFE + AA+AV
Sbjct: 246 NYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAV 305
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLD+ ID E
Sbjct: 306 EELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSE 365
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS KVM D +G S+G GFV FSTPEEA++A+ EMN +MV KPLYVAL
Sbjct: 366 KLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVAL 425
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPR------MP--------MYPPGGPGIG---- 422
AQRK+ RR++L+ Q + M + A MP +PP G G
Sbjct: 426 AQRKDVRRSQLEQQIQARNQMRMQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAPFPG 485
Query: 423 ---QQIFYGQGPPAMIP---PQPGFGYQQQLVPGMRP 453
Q + G+G P P P+PG Q V GM P
Sbjct: 486 PNPQMMMRGRGQP--FPEQWPRPGPNGQPVPVYGMPP 520
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/400 (54%), Positives = 291/400 (72%), Gaps = 8/400 (2%)
Query: 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80
+ T SLYVGDL +VT++ LY+ F+ G ++S+R+CRDL T S Y YVNF + ++A
Sbjct: 8 YPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67
Query: 81 ALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140
AL+ +NF + GKP+R+M+S RDPSLRKSG GNIF+KNLDK+I++KAL+DT SAFGNILS
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 141 CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI--N 198
C V D NG SKGYGFV F+ E+A++AI+K+NGMLLN ++V+VG F ++ER+ E+
Sbjct: 128 CNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR 186
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAAR 258
+F NVY+KN E +E L+ FG++G S VM D GKSK FGFV+FE +DA +
Sbjct: 187 AKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQK 246
Query: 259 AVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318
AV+ +NGK+ + K+ YVG+AQKK ER+ ELK FEQ ++ ++Q NLY+KNLDD ID
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378
DE+L++ FSPFG+ITS KVM + G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV
Sbjct: 307 DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 379 ALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGG 418
ALAQRKE+R+A L ++ Q MAS A PP G
Sbjct: 366 ALAQRKEERQAYLTNEYMQR----MASVRAVPNQRAPPSG 401
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 165/298 (55%), Gaps = 16/298 (5%)
Query: 103 DPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDN 161
+PS ++++ +L + L++ FS G ILS ++ DL S Y +V F +
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 162 EESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQK 221
+ A+ A++ +N ++ K V + +RD + KS N++VKNL +S + L
Sbjct: 62 TKDAEHALDTMNFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYD 117
Query: 222 SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281
+ +G I S V+ D +G SK +GFV+FE + A RA++ +NG + ++ +VG+ + +
Sbjct: 118 TVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSR 176
Query: 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341
ERE EL A + N+YIKN + +DDE+LK LF FG S KVM D
Sbjct: 177 KEREAEL----------GARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
SG S+G GFV+F E+A +A+ EMNGK + K +YV AQ+K +R+ L+ F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 296 MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS---GFVA 352
M + + A+LY+ +L + + L + FSP G I S ++ RD I+ GS +V
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRD--LITSGSSNYAYVN 58
Query: 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F ++A AL MN ++ KP+ + +QR R
Sbjct: 59 FQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/505 (47%), Positives = 321/505 (63%), Gaps = 60/505 (11%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN+++ + +AL
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 124 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 183
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +N MLLN+K+VYVG+ + K++R ++ K+
Sbjct: 184 VAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKA 243
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+S T+E+ + F +YG +TS+ + RD +GKS+ FGFVNF + AA+AV
Sbjct: 244 NFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAV 303
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LNGK+F ++ YVG+AQKK ERE EL+ +E E A+K+QG NLYIKNL D IDD+
Sbjct: 304 EELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 321 KLKQLFSPFGSITSCKVMRDPS-------------------------------------- 342
KL+Q+FS +G ITS KVMRD
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 343 -------GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395
G S+G GFV FS P++A++A+ EMN +M+ KPLYVALAQRK+ R+ +L+A
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASI 483
Query: 396 AQMRPVAMASTVA----PRMPMYPPGGPGIGQQI-FYGQGPPAMIPPQPGFGYQQQLVPG 450
+ M A P+ M P GQQ F G M PQ G G V G
Sbjct: 484 QARNQLRMQQAAAQAGLPQQYMQTPVYYAPGQQPNFMPPGGRGMPFPQGGLG--MPAVQG 541
Query: 451 MRPGGGPMQNFFVPIAQPGQQGQRP 475
RPG F P AQ G +G P
Sbjct: 542 GRPGQ------FPPYAQQGGRGGMP 560
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 44/129 (34%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 62
AN++ +LY+ +L ++ D +L +F++ G + S +V RD T
Sbjct: 343 ANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENK 402
Query: 63 -----------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93
+S G+G+V FSN +A +A+ +N + GK
Sbjct: 403 KEGEQAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGK 462
Query: 94 PIRVMYSHR 102
P+ V + R
Sbjct: 463 PLYVALAQR 471
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 436 bits (1122), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/470 (50%), Positives = 309/470 (65%), Gaps = 44/470 (9%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
++SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRRSL Y YVN+ N +A RAL
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
+ LN TP+ GK R+M+S RDPSLRKSG GN+FIKNLDK IDHKAL+DTFSAFGNILSCK
Sbjct: 69 DTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCK 128
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD--TEINKS 200
V TD SKG+GFV ++ +ESA KAI K+NGM++N ++V+VG F +ER TE+
Sbjct: 129 VVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEV--- 185
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
KFTNV+ KNLSE + L++ +YG IT+ +M D GKSK FGF NFE+++ A V
Sbjct: 186 KFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVV 245
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E NGK F K Y G+AQKK ERE ELKH FE K+QG NLYIKN+DDSID++
Sbjct: 246 ENENGKIFHGKPIYAGRAQKKIEREAELKHTFE-------TKYQGVNLYIKNIDDSIDND 298
Query: 321 KLKQLFSPFGSITSCKVMR-DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379
KL+++FS FG+ITS VM+ D + S+G GFV ++ P+EA+RA+ EMNG+M+ +KPLYVA
Sbjct: 299 KLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVA 358
Query: 380 LAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPGIGQQIFYGQGP----PAMI 435
LAQRK+ RRA+L+ Q Q + + P YG GP PA +
Sbjct: 359 LAQRKDIRRAQLEMQHQQKFKTGIRQQMPPT----------------YGSGPVFFTPAPV 402
Query: 436 PPQPGFGYQQQLVPGMR-----PGGGP---MQNFFVPIAQPGQQGQRPSG 477
PQ + QQ++P R P G P N QP Q G R +G
Sbjct: 403 NPQVVY---QQMMPRPRNWNGQPVGVPQGQYANMNYARGQPRQNGPRQNG 449
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/459 (50%), Positives = 315/459 (68%), Gaps = 20/459 (4%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
T SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 51 TASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAI 110
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++P+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFS FG ILSCK
Sbjct: 111 EELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCK 170
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 171 VATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKA 230
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ +EEDL+K F YG ITS + +D +GKSK FGFVN+E + A +AV
Sbjct: 231 NFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAV 290
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL+IKNLDD+ID E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 350
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVAL 410
Query: 381 AQRKEDRRARLQAQFA---QMRPVAMASTVAPRMPMYPPGGPGIGQQIFY---GQGPPAM 434
AQRK+ RR++L+ Q QMR A+T PP GQQ F+ G+G
Sbjct: 411 AQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPPM--FYGQQGFFPPNGRGNAPF 468
Query: 435 IPPQPGFGYQQQLVPGMRPGGGPMQNFFVPIAQPGQQGQ 473
P P Q ++ +P GGP Q +PG GQ
Sbjct: 469 PGPNP-----QMIMRRGQPFGGPEQ-----WPRPGPNGQ 497
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/423 (51%), Positives = 296/423 (69%), Gaps = 3/423 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
N ++ + SLYVGDL+ +V+++ LYD+F+ +G V S+RVCRD T+ SLGY YVNF++
Sbjct: 28 NQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHD 87
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
A A+E LNFTP+ GK R+M+S RDPSLRK GAGNIFIKNL ID+KAL+DTFS FG
Sbjct: 88 AAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFG 147
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILS KVATD G+SKG+G+V F+ +ESA +AI+ LNGMLLN +++YVG L K+ER+++
Sbjct: 148 NILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESK 207
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN++ TT+++ ++ ++G S V+ R +G++K FGFVNF N +
Sbjct: 208 FEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHE 267
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
DA + VE LN +F + YV +AQKK ER+ ELK Q+E E K+QG NL+IKNLD
Sbjct: 268 DAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLD 327
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374
DSIDD+KL++ F+P+G+ITS KVM +G S+G GFV FSTPEEA++A+ E N ++V K
Sbjct: 328 DSIDDKKLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGK 387
Query: 375 PLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPG-IGQQIFYGQGPPA 433
PLYVA+AQRK+ RR++L Q + A G PG +FYG PP
Sbjct: 388 PLYVAIAQRKDVRRSQLAQQIQARNQMRFQQASAAAAAAAAAGMPGQFMPPMFYGVMPPR 447
Query: 434 MIP 436
+P
Sbjct: 448 GVP 450
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 286 LELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGI 344
L L+ + E +E + A+LY+ +LD S+ + L +FSP G+++S +V RD +
Sbjct: 15 LSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKT 74
Query: 345 SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
S G +V F+ + A A+ ++N + K + +QR R +
Sbjct: 75 SLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKK 120
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/462 (50%), Positives = 313/462 (67%), Gaps = 30/462 (6%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF ++ +A+
Sbjct: 50 SASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAI 109
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN++ + G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTF+AFG ILSCK
Sbjct: 110 EDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCK 169
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD G SK +GFV ++ E+A+ AIE +NGMLLND++VYVG + K++R+++ K+
Sbjct: 170 VATDDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKA 229
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTNVY KN+ +EE+ +K F YG ITS + +D +GKSK FGFVNFEN + A +AV
Sbjct: 230 NFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAV 289
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL+IKNLDD+ID E
Sbjct: 290 DELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSE 349
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFGSITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M+ KPLYVAL
Sbjct: 350 KLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVAL 409
Query: 381 AQRKEDRRARLQAQFA---QMRPVAMASTVAPRMPMYPPGGPGIGQQIFYGQGPPAMIPP 437
AQRK+ RR++L+ Q QMR A+T PP +FYGQ
Sbjct: 410 AQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPP--------MFYGQ-------- 453
Query: 438 QPGFGYQQQLVPGMRPGG---GPMQNFFVPIAQ-PGQQGQRP 475
QPGF P R G GP +P Q P QGQ P
Sbjct: 454 QPGF-----FPPNGRGNGPFPGPNPQMMMPRGQIPPPQGQWP 490
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 297 KEAADKFQ----GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFV 351
+EAAD Q A+LY+ L+ S+++ L ++FSP G + S +V RD + S G +V
Sbjct: 38 EEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYV 97
Query: 352 AFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388
F E+ +A+ ++N ++ +P + +QR R
Sbjct: 98 NFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLR 134
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/411 (52%), Positives = 297/411 (72%), Gaps = 12/411 (2%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L +V ++ L+++F+ +GQV S+RVCRD +++SLGY YVN+ ++ +A+
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+ P+ G+P R+M+S RDPS R+SG GNIFIKNL AID+KALHDTFSAFG ILSCK
Sbjct: 111 EELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCK 170
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VATD GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+
Sbjct: 171 VATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKA 230
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ + +EE +K F +G ITS + +D DGKSK FGFVNFE+ + A +AV
Sbjct: 231 NFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAV 290
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
E LN K+ + ++ YVG+AQKK ER ELK Q+E E K+QG NL++KNLDD+ID E
Sbjct: 291 EELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSE 350
Query: 321 KLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380
KL++ F PFG+ITS KVM D +G S+G GFV F+TPEEA++A+ EMN +M+ KPLYVAL
Sbjct: 351 KLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVAL 410
Query: 381 AQRKEDRRARLQAQFAQMRPVAMASTVAPRMP--MYPPGGPGIGQQIFYGQ 429
AQRK+ RR++L+ Q + M + A +P PP +FYGQ
Sbjct: 411 AQRKDVRRSQLEQQIQARNQMRMQNAAAGGLPGQFIPP--------MFYGQ 453
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/441 (49%), Positives = 307/441 (69%), Gaps = 12/441 (2%)
Query: 2 AQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST 61
A+ +A+ ++ G+ +Q SLYVG+L+ +VT++ L+++FN +G V SVRVCRD T
Sbjct: 24 AEGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAIT 83
Query: 62 RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDK 121
RRSLGY YVNF N + RALE LN++P+ +P R+M+S RDP+LRK+GAGNI+IKNLD
Sbjct: 84 RRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDP 143
Query: 122 AIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181
AID+KALHDTFSAFG ILSCK+ATD G S+G+GFV +++ ESA+ AI+ +NGMLLNDK+
Sbjct: 144 AIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKK 203
Query: 182 VYVGHFLRKQER--DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD 239
V+VG + K +R E K+ FTNV++KNL TE + ++ ++G +S + + +
Sbjct: 204 VFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDE 263
Query: 240 GKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEA 299
GK FGFV+++ D A +A++ L+ +F + + G+A+KK ER EL+ Q+E + E
Sbjct: 264 GKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEK 323
Query: 300 ADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359
+K+QG NLYIKNLDD+IDD+KL+ F+P G+ITS KVM D +G S+G GFV +S+PEEA
Sbjct: 324 LNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEA 383
Query: 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA---QMRPVAMASTVAPRMPMYPP 416
++A+ EMN ++V KPLYV LAQRK+ RR++LQ Q QMR A+ A +P
Sbjct: 384 TKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMRLQQQAA--AGGLPGQYM 441
Query: 417 GGPGIGQQIFYGQGPPAMIPP 437
G PG +FY G P +PP
Sbjct: 442 GNPG----VFY-PGQPGFMPP 457
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/456 (49%), Positives = 306/456 (67%), Gaps = 22/456 (4%)
Query: 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85
LYVG+L +V ++ L+++F+ +GQV S+RVCRD T++SLGY YVNF + +RA+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 86 NFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAT 145
N++ ++G+P R+M+S RDPSLR++G GNIFIKNL AID+KALHDTFSAFG ILSCKVAT
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFSAFGRILSCKVAT 179
Query: 146 DLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KSKFT 203
D GQSK +GFV ++ E+A+ AIE +NGMLLND++V+VG + K++R+++ K+ FT
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263
NVYVKNL+ ++ F +G +TS + D +GKS+ FGFVNFEN + A AV+ +
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEM 299
Query: 264 NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323
N K+ D ++ YVG+AQKK ER ELK +E E K+QG NL++KNLDDSID EKL+
Sbjct: 300 NDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLE 359
Query: 324 QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383
+ F PFG+ITS +VM D +G S+G GFV FS+PEEA++A+ EMN +M+ KPLYVALAQR
Sbjct: 360 EEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQR 419
Query: 384 KEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPG-IGQQIFYGQGPPAMIPPQPGFG 442
K+ RR++L+ Q + M + A G PG +FYGQ P PP G
Sbjct: 420 KDVRRSQLEQQIQARNQMRMQNAAA------AAGMPGQFMSPMFYGQQ-PGFFPPNGRGG 472
Query: 443 YQQQLVPG---MRPGGGPMQNFFVPIAQPGQQGQRP 475
Q P M P GG M P QGQ P
Sbjct: 473 AQGPFPPNPQMMMPRGGQM---------PPPQGQWP 499
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/467 (46%), Positives = 295/467 (63%), Gaps = 69/467 (14%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+ +GQV S+RVCRD TRRSLGY YVN++++++ +AL
Sbjct: 47 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKAL 106
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 107 EELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCK 166
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D G SKGYGFV ++ E+A AI+ +NGMLLN+K+V+VGH + K+ER ++ K+
Sbjct: 167 VAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKA 226
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAV 260
FTN+YVKN+ T+ED ++ F ++G ITSA + RD GKS+ FGFVN+ + AA AV
Sbjct: 227 NFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAV 286
Query: 261 EALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDE 320
+ LN +F ++ YVG+AQKK ERE EL+ Q+E E K+QG NLYIKNL+D +DDE
Sbjct: 287 DHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 346
Query: 321 KLKQLFSPF--------------------------------------------------- 329
KL+ +F+PF
Sbjct: 347 KLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDT 406
Query: 330 --GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387
G + K + G S+G GFV FS P+EA++A+ EMN KM+ KPLYVALAQRK+ R
Sbjct: 407 KAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVR 466
Query: 388 RARLQAQFAQMRPVAMAST------------VAP-RMP-MYPPGGPG 420
+ +L+A + M +AP + P MYPPG G
Sbjct: 467 KNQLEATIQARNQLRMQQQQQQQFGGIPQMFIAPGQQPMMYPPGARG 513
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 187/326 (57%), Positives = 250/326 (76%), Gaps = 2/326 (0%)
Query: 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76
NA+Q + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N
Sbjct: 42 NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 101
Query: 77 EAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG 136
+ RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFG
Sbjct: 102 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFG 161
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
NILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 162 NILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSK 221
Query: 197 IN--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254
K+ FTNVY+KN+ + TEE+ ++ F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 222 FEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 281
Query: 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLD 314
A AV+ +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL
Sbjct: 282 SAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 341
Query: 315 DSIDDEKLKQLFSPFGSITSCKVMRD 340
D +DDEKL++LF P+G+ITS KVMRD
Sbjct: 342 DDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 164/496 (33%), Positives = 245/496 (49%), Gaps = 83/496 (16%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 135 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNA 193
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + S +D + K+ N++IKN+D+ + + + F F
Sbjct: 194 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKF 253
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S ++ D G+S+G+GFV F ESAQ A++++N + +++YVG +K ER+
Sbjct: 254 GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREE 313
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N+YVKNL++ +E L++ FG YGTITSA VMRD
Sbjct: 314 ELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD------ 367
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKF 303
N E + DKE +A K++E+E + E+ ++ AD
Sbjct: 368 ----TNIERTQTPE-----------SDKEKENKEATKENEKESSEAEKAEKTEEKPADS- 411
Query: 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363
G D + L G S+G GFV FS+P+EAS+A+
Sbjct: 412 -GDEKKEDKESKKADKKGL--------------------GKSKGFGFVCFSSPDEASKAV 450
Query: 364 LEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVA----PRMPMYPPGGP 419
EMN +MV KPLYVALAQRK+ RR++L+A + A P+ M P
Sbjct: 451 TEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFY 510
Query: 420 GIGQQIFY-GQGPPAMIPPQPGFGYQQQLVPGMRPGGGPMQNFFVPIAQPGQQGQRPSGR 478
G GQQ F GQ PPQPG ++ G+ PGG P Q P PGQQG R
Sbjct: 511 GPGQQGFIPGQRGGIAFPPQPGM-----VMAGI-PGGRPGQ---YPGPFPGQQGGR---- 557
Query: 479 RAAGMQQNQQHVPMMQ 494
GM NQQ P Q
Sbjct: 558 ---GMGPNQQLPPNFQ 570
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 166/309 (53%), Gaps = 21/309 (6%)
Query: 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKG 153
+ + S P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S G
Sbjct: 32 VTAVESTTAPNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLG 91
Query: 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSES 213
Y +V ++N ++A+E LN L+ K + +RD + K+ NV++KNL +
Sbjct: 92 YAYVNYNNTADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSA 147
Query: 214 TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEW 273
+ L +F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+
Sbjct: 148 IDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 274 YVGKAQKKSEREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG 330
+VG K +R+ E+K F N+YIKN+D + +E+ ++LF FG
Sbjct: 208 FVGHHISKKDRQSKFEEMKANF-------------TNVYIKNIDQDVTEEEFRELFEKFG 254
Query: 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390
ITS + RD G SRG GFV FST E A A+ EMN K + ++ LYV AQ+K +R
Sbjct: 255 EITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Query: 391 LQAQFAQMR 399
L+ Q+ R
Sbjct: 315 LRKQYEAAR 323
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 30/184 (16%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A+++ +LYV +L +V D +L +LF G + S +V RD + R + E
Sbjct: 327 ASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDTNIER---------TQTPE 377
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAG-NIFIKNLDKAIDHKALHDTFSAFG 136
+ + E T N K + + +G K D K L
Sbjct: 378 SDKEKENKEATKENEKESSEAEKAEKTEEKPADSGDEKKEDKESKKADKKGL-------- 429
Query: 137 NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE 196
G+SKG+GFV F + + A KA+ ++N ++N K +YV RK R ++
Sbjct: 430 ------------GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 477
Query: 197 INKS 200
+ S
Sbjct: 478 LEAS 481
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/325 (57%), Positives = 247/325 (76%), Gaps = 2/325 (0%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
ANQ + SLYVG+L+ +VT++ LY+LF+ +GQV S+RVCRD TRRSLGY YVN++N +
Sbjct: 48 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 107
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
RALE LN+T + GKP R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGN
Sbjct: 108 GERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGN 167
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILSCKVA D G SKGYGFV ++ E+A AI+ +NGMLLNDK+V+VGH + K++R ++
Sbjct: 168 ILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 227
Query: 198 N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
K+ FTNVY+KNL +++ +K F ++G ITSA + RD +GKS+ FGFVNF +
Sbjct: 228 EEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHES 287
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A AVE +N K+ ++ YVG+AQKK ERE EL+ Q+E E A K+QG NLY+KNL D
Sbjct: 288 AQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 347
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRD 340
IDDEKL++LF P+G+ITS KVMRD
Sbjct: 348 DIDDEKLRELFGPYGTITSAKVMRD 372
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 172/496 (34%), Positives = 247/496 (49%), Gaps = 93/496 (18%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L++ + + L+D F G ++S +V +D S GYG+V++ A+ A A
Sbjct: 140 GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNA 198
Query: 82 LEMLNFTPLNGKPIRVMY--SHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAF 135
++ +N LN K + V + S +D + K+ N++IKNLD ID F F
Sbjct: 199 IKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKF 258
Query: 136 GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT 195
G I S ++ D G+S+G+GFV F ESAQ A+E++N + +++YVG +K ER+
Sbjct: 259 GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREE 318
Query: 196 EINK----------SKF--TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243
E+ K SK+ N+YVKNL++ +E L++ FG YGTITSA VMRD +
Sbjct: 319 ELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTN---- 374
Query: 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA--- 300
V + S D+A GK +K++++E N KEA
Sbjct: 375 ----VERDQSPDSA------------------GK-EKEADKE---------NDKEATPEA 402
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
+K + A + D E K PFG S+G GFV FS+P+EAS
Sbjct: 403 EKAEKAEEKPSESSEEKDKEAKKSDKKPFGK-------------SKGFGFVCFSSPDEAS 449
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVA----PRMPMYPP 416
+A+ EMN +MV KPLYVALAQRK+ RR++L+A + A P+ M P
Sbjct: 450 KAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPA 509
Query: 417 GGPGIGQQIFYGQGPPAM-IPPQPGFGYQQQLVPGMRPGGGPMQNFFVPIAQPGQQGQRP 475
G GQQ F G M PPQPG +V G+ PGG P Q P PGQQG R
Sbjct: 510 VFYGPGQQGFIPGGQRGMAFPPQPG------MVMGI-PGGRPGQ---YPGPFPGQQGGR- 558
Query: 476 SGRRAAGMQQNQQHVP 491
GM NQQ P
Sbjct: 559 ------GMGPNQQIPP 568
Score = 182 bits (461), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 164/300 (54%), Gaps = 21/300 (7%)
Query: 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNE 162
P+ + + ++++ LD ++ L++ FS+ G + S +V D + +S GY +V ++N
Sbjct: 46 PAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 105
Query: 163 ESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKS 222
++A+E LN L+ K + +RD + K+ NV++KNL + + L +
Sbjct: 106 ADGERALEDLNYTLIKGKPCRI----MWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 161
Query: 223 FGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282
F +G I S V +D G SK +GFV++E ++ A A++ +NG +DK+ +VG K
Sbjct: 162 FAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 221
Query: 283 EREL---ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339
+R+ E+K F N+YIKNLD IDD++ +++F FG ITS + R
Sbjct: 222 DRQSKFEEMKANF-------------TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSR 268
Query: 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
D G SRG GFV FST E A A+ EMN K + S+ LYV AQ+K +R L+ Q+ R
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAAR 328
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR 63
A+++ +LYV +L ++ D +L +LF G + S +V RD + R
Sbjct: 332 ASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTNVER 377
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/321 (57%), Positives = 252/321 (78%), Gaps = 3/321 (0%)
Query: 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82
+ SLYVG+L+ +VT++ L++LF+Q+G V S+RVCRD TRRSLGY YVN++ + +AL
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 83 EMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCK 142
E LN+T + G+P R+M+S RDP+LRK+G GN+FIKNLD AID+KALHDTF+AFGNILSCK
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEIN--KS 200
VA D NG SKGYGFV ++ +E+A +AI+ +NGMLLN+K+VYVGH + K++R ++ + K+
Sbjct: 180 VAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKA 239
Query: 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARA 259
FTN+YVKN++ T+++ + F +YG +TS+ + RD + GKS+ FGFVNF + +DA++A
Sbjct: 240 NFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKA 299
Query: 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDD 319
V+ LN K+F + YVG+AQKK ERE EL+ +E +E A K+QG NLYIKNLDD +DD
Sbjct: 300 VQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 320 EKLKQLFSPFGSITSCKVMRD 340
EKL+QLFS FG ITS KVMRD
Sbjct: 360 EKLRQLFSEFGPITSAKVMRD 380
Score = 159 bits (403), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 161/294 (54%), Gaps = 22/294 (7%)
Query: 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAI 169
+ ++++ LD ++ L + FS G++ S +V D + +S GY +V ++ +KA+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 170 EKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTI 229
E+LN L+ + + +RD + K+ NV++KNL + + L +F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 230 TSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL--- 286
S V +D +G SK +GFV++E + A++A++ +NG ++K+ YVG K +R+
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFD 235
Query: 287 ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGIS 345
E+K F N+Y+KN++ + D++ + LF +G +TS + RD +G S
Sbjct: 236 EMKANF-------------TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKS 282
Query: 346 RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
RG GFV F++ E+AS+A+ E+N K + LYV AQ+K +R L+ + R
Sbjct: 283 RGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/344 (28%), Positives = 163/344 (47%), Gaps = 75/344 (21%)
Query: 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81
G ++++ +L+ + + L+D F G ++S +V +D S GYG+V++ + A++A
Sbjct: 147 GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQA 205
Query: 82 LEMLNFTPLNGKPIRVMYSHRDPSL--------RKSGAGNIFIKNLDKAIDHKALHDTFS 133
++ +N LN K +V H P K+ NI++KN++ + F
Sbjct: 206 IKHVNGMLLNEK--KVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFE 263
Query: 134 AFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192
+G++ S +A D G+S+G+GFV F + E A KA+++LN + + +YVG +K E
Sbjct: 264 KYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHE 323
Query: 193 RDTEINKS------------KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-- 238
R+ E+ KS + N+Y+KNL + +E L++ F E+G ITSA VMRD
Sbjct: 324 REEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
Query: 239 ----------------------------DGKSK-----------------CFGFVNFENS 253
D K + FGFV F N
Sbjct: 384 EPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANP 443
Query: 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMK 297
DDA +AV +N + ++K YV AQ+K R K+Q EQ+++
Sbjct: 444 DDATKAVAEMNQRMVNNKPLYVALAQRKDVR----KNQLEQSIQ 483
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 70/136 (51%), Gaps = 31/136 (22%)
Query: 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVA 408
GFV F+ P++A++A+ EMN +MV +KPLYVALAQRK+ R+ +L+ + M A
Sbjct: 436 GFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQARNQLRMQQAAA 495
Query: 409 ----PRMPMYPPGGPGIGQQIFYGQGP-PAMIPPQPGFG--YQQQLVPGMRPGGGPMQNF 461
P+ M P +FYG G P +PP G G Y Q GG PM
Sbjct: 496 AAGMPQQYMQAP--------VFYGPGSQPGFMPPAGGRGMPYPQ--------GGMPM--- 536
Query: 462 FVPIAQPGQQGQRPSG 477
QPG+ GQ P+G
Sbjct: 537 -----QPGRPGQFPAG 547
Score = 36.6 bits (83), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 46/131 (35%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--------------- 62
A+++ +LY+ +L+ V D +L LF++ G + S +V RD T
Sbjct: 340 ASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEK 399
Query: 63 -------------------------------RSLGYGYVNFSNAQEAARALEMLNFTPLN 91
+S G+G+V F+N +A +A+ +N +N
Sbjct: 400 NKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVN 459
Query: 92 GKPIRVMYSHR 102
KP+ V + R
Sbjct: 460 NKPLYVALAQR 470
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 375 bits (964), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/368 (51%), Positives = 260/368 (70%), Gaps = 4/368 (1%)
Query: 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQE 77
A ++ SLYVGDL A+VT+ L+ F+ +G V+S+R+CRD TRRSLGY YVNF +
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 78 AARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137
A +AL+ +NF + GK IR+M+S RD LR+SG GN+FIKNLDK+ID+K L++ FSAFG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI 197
ILS KV +D G SKGY FV F N+ +A +AIE++NG LL +V+VG F +++R+ E+
Sbjct: 124 ILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 198 NK--SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDD 255
S+FTNVY+KN +E L+ F +YG S VM D GKSK FGFV+F++ +
Sbjct: 183 RSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEA 242
Query: 256 AARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
A +AVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E QG LYIKNLDD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
+IDDEKL+ FS FGSI+ KVM++ G S+G G + FS+PE+A++A+ EMNG+++ SKP
Sbjct: 303 TIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKP 361
Query: 376 LYVALAQR 383
L +ALAQR
Sbjct: 362 LSIALAQR 369
Score = 169 bits (427), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 164/289 (56%), Gaps = 16/289 (5%)
Query: 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIE 170
++++ +L + L FS G +LS ++ D + +S GY +V F AQKA++
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 171 KLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT 230
+N ++ K + L +RD + +S NV++KNL +S + L + F +G I
Sbjct: 70 TMNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 231 SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH 290
S+ VM D G SK + FV+F+N A RA+E +NGK + +VG+ + + +RE EL+
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRS 184
Query: 291 QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGF 350
+ A +F N+YIKN +DDE+LK +FS +G S KVM D SG S+G GF
Sbjct: 185 K--------ASEF--TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGF 234
Query: 351 VAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMR 399
V+F + E A +A+ EMNG+ + + ++V AQ+K +R+A L+ F Q++
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 106/206 (51%), Gaps = 22/206 (10%)
Query: 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAA 257
K + ++YV +L TE+ L + F G + S + RD +S + +VNF DA
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 65
Query: 258 RAVEALNGKKFDDKEWYVGKAQK--KSERELELKHQFEQNMKEAADKFQGANLYIKNLDD 315
+A++ +N FD GK+ + S+R+ L+ N++IKNLD
Sbjct: 66 KALDTMN---FD---IIKGKSIRLMWSQRDAYLRRS------------GIGNVFIKNLDK 107
Query: 316 SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375
SID++ L + FS FG I S KVM D G S+G FV F A RA+ EMNGK++
Sbjct: 108 SIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCK 166
Query: 376 LYVALAQRKEDRRARLQAQFAQMRPV 401
++V + ++DR A L+++ ++ V
Sbjct: 167 VFVGRFKNRKDREAELRSKASEFTNV 192
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/435 (43%), Positives = 279/435 (64%), Gaps = 9/435 (2%)
Query: 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS 60
MA V A + + ++ T SLYVGDL +VT+ LYD F + + SVR+C+D S
Sbjct: 1 MATVHAALHAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDAS 60
Query: 61 TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLD 120
+ RSL YGY NF + Q+A A+E N + LNGK IRVM+S R P R++G GN+F+KNL
Sbjct: 61 SGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLP 120
Query: 121 KAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180
+++ + L D F FGNI+SCKVAT +G+S+GYGFVQF+ E++A AI+ LN ++ DK
Sbjct: 121 ESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADK 180
Query: 181 QVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG 240
++YVG F++K +R + K+TN+Y+KNL +E+ L++ F E+G I S + +D +
Sbjct: 181 EIYVGKFMKKTDRVKP--EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR 238
Query: 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAA 300
+ + FVNF+N +DA RA E +NG KF K YVG+AQKK+ERE L+ QF++ +E
Sbjct: 239 LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQK 298
Query: 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360
+ +N+Y+KN++ ++ +E+L++ FS G+ITS K+M D G S+G GFV FSTPEEA
Sbjct: 299 MIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAI 358
Query: 361 RALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMASTVAPRMPMYPPGGPG 420
A+ +G+M KPLYVA+AQ+KEDR+ +LQ QF +S+ A PG
Sbjct: 359 DAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASV-------NPG 411
Query: 421 IGQQIFYGQGPPAMI 435
++Y P M+
Sbjct: 412 TYAPLYYTNTHPGMV 426
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/358 (51%), Positives = 243/358 (67%), Gaps = 5/358 (1%)
Query: 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87
VGDL+ +VT+ LY F G + R+CRD TR LGYGYVNF +A AL +NF
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 88 TPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL 147
+NGKP R+M+S D LRKSG GNIFIKNLDK+ID++AL FSAFGNILSCKV D
Sbjct: 82 DLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD 141
Query: 148 NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEI---NKSKFTN 204
NG SKGY +V FD+ +A +AI +NG+ LN++QVYVG F +ER E+ +++ FTN
Sbjct: 142 NG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTN 200
Query: 205 VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264
V+VKN+ + +E L++ F EYG S V+RD GKSK FGFV +E + A +AV L+
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 265 GKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324
GK D K YVG+AQKK ER EL+ +FE+ + + G +YIKNLD++I+DEKLK+
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKE 320
Query: 325 LFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382
FS FGSI+ KVM + G +G G V FS+ EEA++A+ EMNG++V SKPL+V L Q
Sbjct: 321 EFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 150/275 (54%), Gaps = 15/275 (5%)
Query: 116 IKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSK-GYGFVQFDNEESAQKAIEKLNG 174
+ +LD + L+ F G + ++ D +S GYG+V F A+ A+ +N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVV 234
L+N K L + D + KS N+++KNL +S L F +G I S V
Sbjct: 82 DLINGKPFR----LMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKV 137
Query: 235 MRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQ 294
+ D +G SK + +V+F++ A RA+ +NG + ++++ YVG+ + ER E++ +
Sbjct: 138 VCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTR--- 193
Query: 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354
D+ N+++KN+ D IDDEKLK+LF +G S KV+RD SG S+G GFV +
Sbjct: 194 ------DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYE 247
Query: 355 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389
T E A +A+L+++GK + K LYV AQ+K +R A
Sbjct: 248 THEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 194,092,233
Number of Sequences: 539616
Number of extensions: 8826879
Number of successful extensions: 34709
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 476
Number of HSP's that attempted gapping in prelim test: 26881
Number of HSP's gapped (non-prelim): 4776
length of query: 507
length of database: 191,569,459
effective HSP length: 122
effective length of query: 385
effective length of database: 125,736,307
effective search space: 48408478195
effective search space used: 48408478195
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)