Query 010577
Match_columns 507
No_of_seqs 318 out of 3164
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 02:09:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 3.2E-68 6.8E-73 543.4 52.9 373 24-397 1-377 (562)
2 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.1E-49 9E-54 391.6 35.5 349 22-384 1-480 (481)
3 KOG0123 Polyadenylate-binding 100.0 1.1E-47 2.5E-52 360.0 32.1 357 24-395 2-360 (369)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-44 3E-49 349.8 27.9 340 22-385 2-350 (352)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.4E-42 3E-47 354.8 36.3 258 113-387 2-264 (562)
6 KOG0117 Heterogeneous nuclear 100.0 2E-41 4.4E-46 304.8 35.0 285 70-391 39-338 (506)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 4.2E-40 9.1E-45 322.6 27.6 299 19-334 54-370 (578)
8 KOG0145 RNA-binding protein EL 100.0 4.2E-40 9.1E-45 275.3 23.3 317 14-384 32-358 (360)
9 KOG0117 Heterogeneous nuclear 100.0 4.7E-39 1E-43 289.6 25.0 255 15-285 75-335 (506)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 5.1E-39 1.1E-43 315.0 26.6 281 74-386 18-309 (578)
11 KOG0148 Apoptosis-promoting RN 100.0 1.1E-38 2.4E-43 268.7 19.6 236 109-386 4-240 (321)
12 KOG0127 Nucleolar protein fibr 100.0 7.5E-37 1.6E-41 281.7 26.6 343 24-366 6-516 (678)
13 TIGR01622 SF-CC1 splicing fact 100.0 2.9E-36 6.2E-41 301.7 27.2 343 18-385 84-449 (457)
14 KOG0144 RNA-binding protein CU 100.0 1.1E-36 2.4E-41 272.9 18.3 363 20-384 31-504 (510)
15 TIGR01645 half-pint poly-U bin 100.0 1.9E-35 4.1E-40 290.0 28.0 172 19-190 103-284 (612)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.6E-35 3.4E-40 294.5 25.6 262 111-384 2-351 (481)
17 KOG0127 Nucleolar protein fibr 100.0 1.6E-34 3.5E-39 266.3 23.0 277 112-388 6-382 (678)
18 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.5E-33 9.7E-38 282.8 29.1 257 17-280 169-501 (509)
19 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.1E-32 2.4E-37 279.9 23.5 269 109-383 173-501 (509)
20 KOG0148 Apoptosis-promoting RN 100.0 4.1E-32 8.9E-37 229.1 19.4 222 20-281 3-238 (321)
21 KOG0110 RNA-binding protein (R 100.0 1.1E-32 2.3E-37 263.1 17.5 330 20-386 224-695 (725)
22 TIGR01659 sex-lethal sex-letha 100.0 4.1E-31 8.9E-36 247.4 22.4 171 18-190 102-275 (346)
23 KOG0123 Polyadenylate-binding 100.0 5.9E-30 1.3E-34 240.6 23.8 250 113-390 3-252 (369)
24 KOG4212 RNA-binding protein hn 100.0 5.1E-30 1.1E-34 230.3 20.7 247 13-272 34-285 (608)
25 TIGR01659 sex-lethal sex-letha 100.0 1.8E-29 3.9E-34 236.4 23.3 169 198-384 103-275 (346)
26 KOG1190 Polypyrimidine tract-b 100.0 2.2E-28 4.8E-33 218.2 21.2 349 18-383 23-490 (492)
27 KOG0144 RNA-binding protein CU 100.0 2.7E-29 5.9E-34 225.6 15.1 176 200-392 32-214 (510)
28 TIGR01645 half-pint poly-U bin 100.0 2.1E-26 4.6E-31 226.4 25.0 177 200-383 105-283 (612)
29 KOG0110 RNA-binding protein (R 99.9 1.9E-26 4E-31 220.6 19.4 266 19-290 381-702 (725)
30 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 5.1E-26 1.1E-30 220.2 21.9 172 20-191 86-350 (352)
31 KOG0147 Transcriptional coacti 99.9 5.5E-27 1.2E-31 218.2 10.8 329 18-383 174-527 (549)
32 KOG0124 Polypyrimidine tract-b 99.9 3.2E-25 6.9E-30 195.1 16.9 270 112-381 114-532 (544)
33 KOG0124 Polypyrimidine tract-b 99.9 6.6E-25 1.4E-29 193.1 17.4 256 22-277 112-531 (544)
34 KOG4211 Splicing factor hnRNP- 99.9 3.5E-24 7.6E-29 196.9 21.1 348 21-377 8-502 (510)
35 KOG0145 RNA-binding protein EL 99.9 2.2E-25 4.7E-30 187.3 12.1 165 202-384 41-209 (360)
36 TIGR01622 SF-CC1 splicing fact 99.9 1.3E-24 2.9E-29 217.5 17.5 176 201-383 88-265 (457)
37 KOG0131 Splicing factor 3b, su 99.9 1.4E-23 3.1E-28 167.3 12.4 173 19-192 5-179 (203)
38 KOG1456 Heterogeneous nuclear 99.9 5.5E-21 1.2E-25 169.1 27.7 342 17-373 25-474 (494)
39 KOG0109 RNA-binding protein LA 99.9 1.5E-23 3.3E-28 179.4 10.6 152 24-194 3-154 (346)
40 KOG0109 RNA-binding protein LA 99.9 1.3E-23 2.8E-28 179.7 9.0 147 204-384 4-150 (346)
41 KOG4211 Splicing factor hnRNP- 99.9 1.6E-20 3.4E-25 173.1 27.5 266 110-381 9-355 (510)
42 KOG0131 Splicing factor 3b, su 99.9 3E-23 6.6E-28 165.4 8.4 170 199-385 6-178 (203)
43 KOG0146 RNA-binding protein ET 99.9 3.8E-22 8.2E-27 168.5 12.2 186 201-386 18-367 (371)
44 KOG4212 RNA-binding protein hn 99.9 1.1E-21 2.4E-26 176.9 13.1 247 111-381 44-291 (608)
45 KOG1365 RNA-binding protein Fu 99.8 1.4E-19 3.1E-24 160.8 18.6 273 113-387 62-365 (508)
46 KOG1190 Polypyrimidine tract-b 99.8 3.1E-18 6.7E-23 153.7 21.6 251 19-280 146-490 (492)
47 KOG4205 RNA-binding protein mu 99.8 8.4E-19 1.8E-23 158.9 14.3 174 201-388 5-180 (311)
48 KOG0105 Alternative splicing f 99.8 2.1E-18 4.4E-23 137.9 13.9 150 19-177 2-175 (241)
49 KOG4205 RNA-binding protein mu 99.8 6.7E-19 1.4E-23 159.6 10.4 168 22-191 5-177 (311)
50 KOG4206 Spliceosomal protein s 99.8 1.2E-17 2.6E-22 139.7 15.6 158 21-185 7-217 (221)
51 KOG0120 Splicing factor U2AF, 99.8 7.3E-18 1.6E-22 160.3 15.4 259 14-279 166-490 (500)
52 KOG0147 Transcriptional coacti 99.7 2E-18 4.4E-23 161.5 7.9 176 202-382 179-356 (549)
53 KOG0146 RNA-binding protein ET 99.7 1.7E-17 3.6E-22 140.6 12.5 189 92-282 2-366 (371)
54 KOG1365 RNA-binding protein Fu 99.7 7.1E-17 1.5E-21 143.8 15.1 259 16-276 53-357 (508)
55 PLN03134 glycine-rich RNA-bind 99.7 7.3E-17 1.6E-21 132.1 12.6 89 15-103 26-114 (144)
56 PLN03134 glycine-rich RNA-bind 99.7 4.2E-17 9.1E-22 133.5 9.7 80 304-383 33-113 (144)
57 KOG4206 Spliceosomal protein s 99.7 2.9E-16 6.3E-21 131.4 12.9 175 202-382 9-220 (221)
58 KOG1457 RNA binding protein (c 99.7 5.6E-16 1.2E-20 128.0 12.7 155 21-178 32-274 (284)
59 KOG0120 Splicing factor U2AF, 99.7 2.2E-16 4.7E-21 150.3 11.5 268 111-384 175-492 (500)
60 KOG1456 Heterogeneous nuclear 99.7 4.2E-15 9.1E-20 132.2 16.6 261 109-382 29-361 (494)
61 KOG1548 Transcription elongati 99.6 1.2E-14 2.7E-19 128.3 16.6 167 18-188 129-350 (382)
62 KOG4307 RNA binding protein RB 99.6 4.4E-15 9.6E-20 142.1 14.2 165 21-187 309-511 (944)
63 KOG0106 Alternative splicing f 99.6 1.2E-15 2.5E-20 129.5 6.9 149 24-187 2-168 (216)
64 PF00076 RRM_1: RNA recognitio 99.6 3.1E-15 6.8E-20 107.9 7.9 70 308-377 1-70 (70)
65 KOG0122 Translation initiation 99.6 8.7E-15 1.9E-19 123.1 10.5 85 19-103 185-269 (270)
66 PF00076 RRM_1: RNA recognitio 99.6 6.3E-15 1.4E-19 106.2 8.0 70 26-96 1-70 (70)
67 KOG0122 Translation initiation 99.6 4E-15 8.6E-20 125.1 7.6 81 304-384 188-269 (270)
68 KOG0132 RNA polymerase II C-te 99.6 9.5E-14 2.1E-18 135.1 16.8 80 303-387 419-498 (894)
69 PF14259 RRM_6: RNA recognitio 99.6 1.9E-14 4.1E-19 103.5 8.9 70 308-377 1-70 (70)
70 KOG0105 Alternative splicing f 99.6 3.7E-14 8E-19 113.8 11.1 164 201-372 5-176 (241)
71 KOG1457 RNA binding protein (c 99.6 3.7E-14 8.1E-19 117.4 11.1 171 199-372 31-274 (284)
72 KOG0121 Nuclear cap-binding pr 99.6 1.1E-14 2.3E-19 109.5 7.1 84 19-102 32-115 (153)
73 KOG4307 RNA binding protein RB 99.5 8.7E-13 1.9E-17 126.7 21.4 168 114-283 314-516 (944)
74 KOG0149 Predicted RNA-binding 99.5 7.6E-15 1.6E-19 123.1 6.0 77 306-383 13-90 (247)
75 KOG0114 Predicted RNA-binding 99.5 5.4E-14 1.2E-18 101.5 8.7 87 16-105 11-97 (124)
76 KOG0132 RNA polymerase II C-te 99.5 4.2E-13 9.1E-18 130.7 17.6 110 200-327 419-528 (894)
77 KOG0107 Alternative splicing f 99.5 1.4E-14 3.1E-19 115.4 6.2 76 304-383 9-84 (195)
78 KOG0125 Ataxin 2-binding prote 99.5 1.1E-14 2.5E-19 127.5 6.2 79 305-384 96-174 (376)
79 KOG0107 Alternative splicing f 99.5 2.4E-14 5.2E-19 114.2 7.2 78 21-103 8-85 (195)
80 PF14259 RRM_6: RNA recognitio 99.5 3.6E-14 7.9E-19 102.0 7.6 70 26-96 1-70 (70)
81 KOG0149 Predicted RNA-binding 99.5 3.3E-14 7.2E-19 119.3 7.6 83 19-102 8-90 (247)
82 KOG0106 Alternative splicing f 99.5 9.9E-15 2.1E-19 123.9 3.9 165 204-382 3-169 (216)
83 PLN03120 nucleic acid binding 99.5 9.1E-14 2E-18 121.4 8.8 76 305-383 4-79 (260)
84 KOG1548 Transcription elongati 99.5 1.1E-12 2.3E-17 116.2 14.8 181 199-382 131-350 (382)
85 KOG0125 Ataxin 2-binding prote 99.5 1.2E-13 2.6E-18 121.2 8.6 87 13-101 86-172 (376)
86 PLN03120 nucleic acid binding 99.5 2.4E-13 5.2E-18 118.8 10.2 77 23-103 4-80 (260)
87 KOG4207 Predicted splicing fac 99.5 5.9E-14 1.3E-18 114.8 5.3 78 305-382 13-91 (256)
88 KOG4207 Predicted splicing fac 99.5 1.1E-13 2.4E-18 113.2 6.8 87 17-103 7-93 (256)
89 KOG0113 U1 small nuclear ribon 99.4 2.3E-13 5E-18 117.9 7.9 82 303-384 99-181 (335)
90 KOG0114 Predicted RNA-binding 99.4 7.6E-13 1.6E-17 95.7 9.1 80 305-386 18-97 (124)
91 KOG0121 Nuclear cap-binding pr 99.4 2.6E-13 5.6E-18 102.2 7.0 86 303-388 34-120 (153)
92 KOG4849 mRNA cleavage factor I 99.4 3.8E-12 8.3E-17 112.5 15.1 73 307-379 82-157 (498)
93 KOG0113 U1 small nuclear ribon 99.4 4.5E-13 9.8E-18 116.1 8.6 83 18-100 96-178 (335)
94 PLN03213 repressor of silencin 99.4 8.7E-13 1.9E-17 121.9 9.7 80 303-385 8-89 (759)
95 smart00362 RRM_2 RNA recogniti 99.4 1.2E-12 2.5E-17 94.8 8.5 72 307-379 1-72 (72)
96 PLN03121 nucleic acid binding 99.4 1.6E-12 3.5E-17 111.6 10.0 77 22-102 4-80 (243)
97 KOG0126 Predicted RNA-binding 99.4 6E-14 1.3E-18 112.4 1.1 76 306-381 36-112 (219)
98 PLN03121 nucleic acid binding 99.4 1.1E-12 2.3E-17 112.7 8.7 76 304-382 4-79 (243)
99 KOG0130 RNA-binding protein RB 99.4 3.9E-13 8.5E-18 102.1 5.1 80 303-382 70-150 (170)
100 KOG0126 Predicted RNA-binding 99.4 4.4E-14 9.5E-19 113.2 -0.3 82 20-101 32-113 (219)
101 COG0724 RNA-binding proteins ( 99.4 4.9E-12 1.1E-16 119.4 13.6 124 23-146 115-260 (306)
102 smart00362 RRM_2 RNA recogniti 99.4 3.1E-12 6.8E-17 92.5 8.9 71 25-97 1-71 (72)
103 KOG0130 RNA-binding protein RB 99.4 1.2E-12 2.7E-17 99.4 6.7 87 17-103 66-152 (170)
104 KOG0111 Cyclophilin-type pepti 99.4 2.6E-13 5.7E-18 112.0 3.3 84 304-387 9-93 (298)
105 KOG0128 RNA-binding protein SA 99.4 3.1E-15 6.7E-20 147.2 -9.4 321 24-383 480-814 (881)
106 PLN03213 repressor of silencin 99.4 2E-12 4.4E-17 119.5 9.2 80 19-102 6-87 (759)
107 smart00360 RRM RNA recognition 99.4 4.5E-12 9.7E-17 91.4 8.7 71 28-98 1-71 (71)
108 cd00590 RRM RRM (RNA recogniti 99.3 8.2E-12 1.8E-16 90.8 9.0 74 307-380 1-74 (74)
109 smart00360 RRM RNA recognition 99.3 5E-12 1.1E-16 91.1 7.5 70 310-379 1-71 (71)
110 PF13893 RRM_5: RNA recognitio 99.3 5.7E-12 1.2E-16 85.7 6.7 56 322-381 1-56 (56)
111 KOG0108 mRNA cleavage and poly 99.3 4.9E-12 1.1E-16 120.5 8.0 82 306-387 19-101 (435)
112 cd00590 RRM RRM (RNA recogniti 99.3 2.1E-11 4.5E-16 88.7 9.6 74 25-99 1-74 (74)
113 KOG0108 mRNA cleavage and poly 99.3 1.2E-11 2.7E-16 117.7 9.7 82 24-105 19-100 (435)
114 KOG4454 RNA binding protein (R 99.2 3E-12 6.4E-17 106.0 2.2 148 17-181 3-154 (267)
115 smart00361 RRM_1 RNA recogniti 99.2 3.7E-11 8E-16 85.6 6.9 61 319-379 2-70 (70)
116 KOG4660 Protein Mei2, essentia 99.2 6.2E-11 1.3E-15 112.2 9.9 151 19-181 71-241 (549)
117 PF13893 RRM_5: RNA recognitio 99.2 5.1E-11 1.1E-15 81.0 6.8 56 40-100 1-56 (56)
118 smart00361 RRM_1 RNA recogniti 99.2 8.2E-11 1.8E-15 83.9 7.5 61 37-97 2-69 (70)
119 KOG0129 Predicted RNA-binding 99.2 6E-10 1.3E-14 104.7 15.0 158 14-171 250-432 (520)
120 KOG0111 Cyclophilin-type pepti 99.2 1.7E-11 3.7E-16 101.5 4.0 85 21-105 8-92 (298)
121 KOG0128 RNA-binding protein SA 99.2 3.2E-12 7E-17 126.3 -0.6 235 19-277 567-811 (881)
122 COG0724 RNA-binding proteins ( 99.2 2.4E-10 5.1E-15 107.9 11.8 166 202-367 115-288 (306)
123 KOG4208 Nucleolar RNA-binding 99.1 3E-10 6.4E-15 93.9 6.6 79 306-384 50-130 (214)
124 KOG0415 Predicted peptidyl pro 99.0 3.7E-10 8E-15 100.4 6.6 85 302-386 236-321 (479)
125 KOG0226 RNA-binding proteins [ 99.0 3.5E-10 7.6E-15 96.2 4.1 169 205-385 99-271 (290)
126 KOG0153 Predicted RNA-binding 99.0 6.9E-10 1.5E-14 98.8 6.1 75 304-383 227-302 (377)
127 KOG0129 Predicted RNA-binding 99.0 4.1E-09 9E-14 99.2 10.3 164 199-365 256-432 (520)
128 KOG4454 RNA binding protein (R 98.9 4.6E-10 9.9E-15 93.2 1.4 140 109-268 7-150 (267)
129 KOG4208 Nucleolar RNA-binding 98.9 6.1E-09 1.3E-13 86.3 7.3 87 17-103 43-130 (214)
130 KOG4661 Hsp27-ERE-TATA-binding 98.9 7.5E-09 1.6E-13 97.9 8.3 87 18-104 400-486 (940)
131 KOG0112 Large RNA-binding prot 98.8 1.9E-09 4.1E-14 107.6 3.4 159 201-384 371-531 (975)
132 KOG0415 Predicted peptidyl pro 98.8 4.9E-09 1.1E-13 93.4 5.5 93 11-103 227-319 (479)
133 KOG0153 Predicted RNA-binding 98.8 1.1E-08 2.3E-13 91.4 7.5 80 17-102 222-302 (377)
134 KOG0226 RNA-binding proteins [ 98.8 7.9E-09 1.7E-13 88.1 6.4 170 113-282 98-271 (290)
135 PF04059 RRM_2: RNA recognitio 98.8 4.2E-08 9E-13 73.0 9.1 69 23-91 1-71 (97)
136 KOG0112 Large RNA-binding prot 98.8 3.8E-09 8.3E-14 105.5 4.1 161 16-186 365-527 (975)
137 KOG0533 RRM motif-containing p 98.8 1.4E-08 3.1E-13 88.9 6.7 79 305-383 83-161 (243)
138 KOG4661 Hsp27-ERE-TATA-binding 98.7 1.4E-08 3E-13 96.1 5.8 79 304-382 404-483 (940)
139 KOG0533 RRM motif-containing p 98.7 7.7E-08 1.7E-12 84.3 9.0 85 18-103 78-162 (243)
140 KOG4849 mRNA cleavage factor I 98.6 5.7E-07 1.2E-11 80.3 12.7 76 201-276 79-157 (498)
141 PF04059 RRM_2: RNA recognitio 98.6 1.7E-07 3.7E-12 69.8 8.0 81 305-385 1-88 (97)
142 KOG0116 RasGAP SH3 binding pro 98.6 8E-08 1.7E-12 91.4 7.9 86 15-101 280-365 (419)
143 KOG4210 Nuclear localization s 98.6 2.8E-08 6E-13 90.8 3.9 176 201-385 87-265 (285)
144 KOG1924 RhoA GTPase effector D 98.6 5.1E-07 1.1E-11 89.1 11.0 18 160-177 207-224 (1102)
145 KOG4210 Nuclear localization s 98.6 9.7E-08 2.1E-12 87.3 5.7 170 19-189 84-263 (285)
146 PF11608 Limkain-b1: Limkain b 98.5 3.8E-07 8.3E-12 64.1 7.2 73 24-106 3-80 (90)
147 KOG4660 Protein Mei2, essentia 98.5 7.2E-08 1.6E-12 91.8 3.2 71 304-378 74-144 (549)
148 KOG4209 Splicing factor RNPS1, 98.4 4.4E-07 9.5E-12 80.1 6.5 80 303-383 99-179 (231)
149 KOG0116 RasGAP SH3 binding pro 98.4 4.8E-07 1E-11 86.2 6.8 81 304-385 287-368 (419)
150 KOG4209 Splicing factor RNPS1, 98.3 1.2E-06 2.7E-11 77.3 5.8 85 18-103 96-180 (231)
151 PF11608 Limkain-b1: Limkain b 98.3 3.4E-06 7.4E-11 59.4 6.7 68 307-383 4-76 (90)
152 KOG4676 Splicing factor, argin 98.2 9.2E-07 2E-11 80.4 4.1 211 111-379 7-221 (479)
153 KOG0151 Predicted splicing reg 98.2 3.1E-06 6.8E-11 82.9 7.7 82 20-101 171-255 (877)
154 PF08777 RRM_3: RNA binding mo 98.1 9.6E-06 2.1E-10 62.2 7.2 77 306-387 2-83 (105)
155 KOG2193 IGF-II mRNA-binding pr 98.0 8.1E-07 1.8E-11 81.4 -0.4 152 24-189 2-156 (584)
156 KOG0151 Predicted splicing reg 98.0 9.4E-06 2E-10 79.6 6.3 81 303-383 172-256 (877)
157 KOG1995 Conserved Zn-finger pr 98.0 1.1E-05 2.4E-10 73.3 6.2 87 17-103 60-154 (351)
158 PF08777 RRM_3: RNA binding mo 98.0 1.7E-05 3.8E-10 60.8 5.9 59 24-88 2-60 (105)
159 KOG1995 Conserved Zn-finger pr 97.9 8.9E-06 1.9E-10 73.8 4.0 82 304-385 65-155 (351)
160 KOG2193 IGF-II mRNA-binding pr 97.8 6.6E-06 1.4E-10 75.7 0.6 154 203-383 2-156 (584)
161 KOG4676 Splicing factor, argin 97.7 2.4E-05 5.1E-10 71.4 2.4 149 25-178 9-214 (479)
162 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00014 3E-09 47.9 5.1 53 23-82 1-53 (53)
163 KOG0115 RNA-binding protein p5 97.6 0.00016 3.5E-09 62.5 6.3 93 254-371 5-97 (275)
164 KOG0115 RNA-binding protein p5 97.5 0.00024 5.2E-09 61.5 6.6 90 75-173 4-93 (275)
165 COG5175 MOT2 Transcriptional r 97.5 0.00026 5.6E-09 63.5 6.2 78 307-384 116-203 (480)
166 COG5175 MOT2 Transcriptional r 97.4 0.00044 9.5E-09 62.1 6.6 82 20-101 111-201 (480)
167 KOG2893 Zn finger protein [Gen 97.4 0.0034 7.3E-08 53.6 11.2 6 445-450 167-172 (341)
168 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.0004 8.7E-09 45.8 4.3 52 306-363 2-53 (53)
169 KOG2314 Translation initiation 97.3 0.00039 8.4E-09 66.9 5.8 74 306-379 59-139 (698)
170 KOG2202 U2 snRNP splicing fact 97.3 7.9E-05 1.7E-09 64.6 0.8 63 320-382 83-146 (260)
171 KOG1996 mRNA splicing factor [ 97.3 0.00052 1.1E-08 60.4 5.5 67 318-384 299-367 (378)
172 PF08952 DUF1866: Domain of un 97.1 0.0015 3.3E-08 52.3 6.5 73 304-384 26-107 (146)
173 KOG1855 Predicted RNA-binding 97.1 0.00057 1.2E-08 63.6 4.5 68 19-86 227-307 (484)
174 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0013 2.8E-08 49.6 5.4 76 21-100 4-89 (100)
175 KOG3152 TBP-binding protein, a 97.0 0.00053 1.1E-08 59.4 3.1 75 22-96 73-159 (278)
176 KOG3152 TBP-binding protein, a 97.0 0.00042 9.1E-09 60.0 2.2 70 306-375 75-157 (278)
177 KOG2314 Translation initiation 96.9 0.0029 6.3E-08 61.1 7.4 81 18-99 53-140 (698)
178 KOG1996 mRNA splicing factor [ 96.8 0.0037 8E-08 55.2 6.6 67 37-103 300-367 (378)
179 KOG1855 Predicted RNA-binding 96.8 0.0017 3.6E-08 60.6 4.7 68 110-177 230-311 (484)
180 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.005 1.1E-07 46.5 6.5 77 305-383 6-91 (100)
181 KOG2202 U2 snRNP splicing fact 96.8 0.00069 1.5E-08 58.9 1.9 64 38-102 83-147 (260)
182 PF08952 DUF1866: Domain of un 96.8 0.0034 7.5E-08 50.3 5.6 74 21-103 25-107 (146)
183 KOG2416 Acinus (induces apopto 96.7 0.0033 7.3E-08 61.1 6.1 82 304-390 443-528 (718)
184 PF10309 DUF2414: Protein of u 96.7 0.0071 1.5E-07 40.8 5.7 54 306-366 6-62 (62)
185 KOG2591 c-Mpl binding protein, 96.5 0.053 1.1E-06 52.7 12.3 71 305-381 175-249 (684)
186 PF15023 DUF4523: Protein of u 96.4 0.018 3.8E-07 45.5 7.2 78 16-101 79-160 (166)
187 PF10567 Nab6_mRNP_bdg: RNA-re 96.2 0.11 2.4E-06 46.6 12.2 158 15-173 7-212 (309)
188 PF10309 DUF2414: Protein of u 96.2 0.029 6.2E-07 37.9 6.7 53 24-85 6-62 (62)
189 PF15023 DUF4523: Protein of u 96.2 0.013 2.8E-07 46.2 5.4 73 303-382 84-160 (166)
190 KOG2416 Acinus (induces apopto 96.0 0.0056 1.2E-07 59.6 3.4 79 19-103 440-522 (718)
191 PF07576 BRAP2: BRCA1-associat 96.0 0.085 1.8E-06 40.7 9.2 74 17-92 7-81 (110)
192 KOG2135 Proteins containing th 95.9 0.0056 1.2E-07 58.0 3.0 86 12-104 361-447 (526)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.9 0.0058 1.3E-07 52.0 2.6 74 19-92 3-82 (176)
194 PF07576 BRAP2: BRCA1-associat 95.8 0.066 1.4E-06 41.3 7.9 74 307-381 15-92 (110)
195 PF08675 RNA_bind: RNA binding 95.4 0.059 1.3E-06 38.4 5.8 54 25-87 11-64 (87)
196 KOG2591 c-Mpl binding protein, 95.2 0.034 7.4E-07 53.9 5.5 75 18-99 170-248 (684)
197 PHA03378 EBNA-3B; Provisional 95.0 0.31 6.8E-06 48.8 11.4 11 306-316 539-549 (991)
198 KOG2068 MOT2 transcription fac 95.0 0.015 3.1E-07 53.2 2.1 78 307-384 79-163 (327)
199 PF04847 Calcipressin: Calcipr 94.7 0.059 1.3E-06 46.0 5.0 61 318-383 8-70 (184)
200 PF03880 DbpA: DbpA RNA bindin 94.7 0.084 1.8E-06 37.7 5.0 59 315-381 11-74 (74)
201 KOG4285 Mitotic phosphoprotein 94.5 0.21 4.6E-06 44.8 8.0 77 14-98 188-265 (350)
202 PF03467 Smg4_UPF3: Smg-4/UPF3 94.4 0.15 3.3E-06 43.4 6.8 79 304-382 6-96 (176)
203 PF08675 RNA_bind: RNA binding 94.3 0.23 5E-06 35.5 6.3 54 307-367 10-63 (87)
204 PF04847 Calcipressin: Calcipr 94.0 0.11 2.3E-06 44.4 5.2 63 35-103 7-71 (184)
205 PF11767 SET_assoc: Histone ly 93.8 0.23 5E-06 34.2 5.5 56 315-378 10-65 (66)
206 KOG0804 Cytoplasmic Zn-finger 93.8 0.25 5.4E-06 47.0 7.4 69 23-93 74-143 (493)
207 KOG2068 MOT2 transcription fac 93.6 0.041 8.9E-07 50.3 2.0 81 21-101 75-161 (327)
208 PF10567 Nab6_mRNP_bdg: RNA-re 93.1 2.2 4.9E-05 38.5 11.8 180 202-382 15-230 (309)
209 KOG0804 Cytoplasmic Zn-finger 92.9 0.23 4.9E-06 47.3 5.7 76 305-381 74-153 (493)
210 PF11767 SET_assoc: Histone ly 92.7 0.31 6.7E-06 33.6 4.8 55 34-97 11-65 (66)
211 KOG4574 RNA-binding protein (c 92.7 0.052 1.1E-06 55.5 1.3 71 308-383 301-373 (1007)
212 PF03880 DbpA: DbpA RNA bindin 92.3 0.6 1.3E-05 33.3 6.1 57 34-99 12-73 (74)
213 KOG2236 Uncharacterized conser 92.2 0.84 1.8E-05 43.9 8.5 16 350-366 318-333 (483)
214 KOG4574 RNA-binding protein (c 91.5 0.15 3.2E-06 52.4 3.0 74 26-105 301-376 (1007)
215 KOG2135 Proteins containing th 91.1 0.088 1.9E-06 50.3 0.9 71 307-383 374-445 (526)
216 PF07292 NID: Nmi/IFP 35 domai 89.9 0.26 5.7E-06 36.1 2.3 66 68-133 1-74 (88)
217 KOG4672 Uncharacterized conser 88.4 2.6 5.7E-05 39.8 8.1 18 69-86 43-60 (487)
218 KOG4285 Mitotic phosphoprotein 87.6 0.84 1.8E-05 41.2 4.3 70 308-384 200-270 (350)
219 KOG2318 Uncharacterized conser 87.5 3.2 7E-05 41.2 8.4 87 20-106 171-311 (650)
220 PF07292 NID: Nmi/IFP 35 domai 87.4 0.95 2.1E-05 33.2 3.8 70 155-224 1-74 (88)
221 KOG2253 U1 snRNP complex, subu 85.7 0.39 8.4E-06 48.2 1.4 69 304-380 39-107 (668)
222 KOG3671 Actin regulatory prote 84.8 12 0.00025 36.8 10.5 47 125-175 92-138 (569)
223 COG5180 PBP1 Protein interacti 84.4 7 0.00015 37.7 8.8 12 249-260 329-340 (654)
224 KOG2253 U1 snRNP complex, subu 84.1 0.2 4.3E-06 50.2 -1.4 72 19-99 36-107 (668)
225 KOG4672 Uncharacterized conser 82.7 13 0.00028 35.4 9.6 13 124-136 48-60 (487)
226 PF14111 DUF4283: Domain of un 82.7 1.3 2.9E-05 36.8 3.2 108 33-146 27-140 (153)
227 KOG2199 Signal transducing ada 77.9 8 0.00017 36.7 6.7 12 37-48 26-37 (462)
228 KOG2199 Signal transducing ada 77.5 4.8 0.0001 38.1 5.1 10 161-170 165-174 (462)
229 KOG2318 Uncharacterized conser 77.1 5.7 0.00012 39.6 5.8 78 304-381 173-305 (650)
230 KOG0119 Splicing factor 1/bran 76.3 35 0.00075 33.7 10.5 19 245-263 206-224 (554)
231 KOG4213 RNA-binding protein La 72.9 2.8 6E-05 34.9 2.2 72 23-99 111-183 (205)
232 smart00596 PRE_C2HC PRE_C2HC d 72.8 6.4 0.00014 27.2 3.5 62 38-102 2-64 (69)
233 KOG3671 Actin regulatory prote 71.1 72 0.0016 31.6 11.3 19 318-337 265-283 (569)
234 PF07530 PRE_C2HC: Associated 69.2 9.6 0.00021 26.5 3.9 63 38-103 2-65 (68)
235 KOG4019 Calcineurin-mediated s 68.7 2.7 5.8E-05 35.1 1.2 73 306-383 11-89 (193)
236 KOG4483 Uncharacterized conser 68.4 7.2 0.00016 36.9 4.1 56 23-84 391-446 (528)
237 KOG4410 5-formyltetrahydrofola 68.1 9.6 0.00021 34.3 4.6 52 20-76 327-378 (396)
238 PF14111 DUF4283: Domain of un 63.6 5.3 0.00012 33.1 2.2 110 123-237 29-140 (153)
239 KOG2891 Surface glycoprotein [ 61.2 2.8 6E-05 37.3 0.0 82 303-384 147-268 (445)
240 PRK14548 50S ribosomal protein 59.9 24 0.00052 25.8 4.6 57 308-366 23-81 (84)
241 PF03468 XS: XS domain; Inter 59.6 9.7 0.00021 29.9 2.8 56 25-83 10-75 (116)
242 PF15513 DUF4651: Domain of un 59.6 14 0.0003 25.0 3.1 22 319-340 8-29 (62)
243 TIGR03636 L23_arch archaeal ri 59.6 26 0.00057 25.1 4.7 58 307-366 15-74 (77)
244 PHA03247 large tegument protei 58.5 1.2E+02 0.0026 37.1 11.8 14 70-83 1958-1971(3151)
245 COG5180 PBP1 Protein interacti 55.5 69 0.0015 31.3 8.1 9 49-57 49-57 (654)
246 KOG4410 5-formyltetrahydrofola 53.8 12 0.00026 33.6 2.7 47 306-357 331-378 (396)
247 KOG0307 Vesicle coat complex C 53.3 1.3E+02 0.0029 33.1 10.5 6 352-357 670-675 (1049)
248 PRK14959 DNA polymerase III su 53.2 1.2E+02 0.0026 31.8 10.0 11 214-224 178-188 (624)
249 KOG2295 C2H2 Zn-finger protein 51.6 2.4 5.2E-05 41.8 -2.1 74 20-93 228-301 (648)
250 KOG1295 Nonsense-mediated deca 51.3 16 0.00035 34.7 3.2 70 21-90 5-77 (376)
251 PRK10629 EnvZ/OmpR regulon mod 51.0 1.3E+02 0.0027 24.1 7.9 69 21-97 33-105 (127)
252 PRK14548 50S ribosomal protein 50.6 62 0.0013 23.7 5.5 57 26-85 23-81 (84)
253 TIGR03636 L23_arch archaeal ri 50.4 68 0.0015 23.0 5.6 58 25-85 15-74 (77)
254 KOG1676 K-homology type RNA bi 48.3 3.1E+02 0.0068 28.1 11.6 19 217-237 250-268 (600)
255 KOG4592 Uncharacterized conser 45.7 1E+02 0.0023 31.4 7.9 16 163-178 28-43 (728)
256 KOG4365 Uncharacterized conser 43.3 5.7 0.00012 38.0 -0.9 78 307-385 5-83 (572)
257 KOG2891 Surface glycoprotein [ 42.5 12 0.00027 33.4 1.1 69 109-177 147-247 (445)
258 COG5178 PRP8 U5 snRNP spliceos 42.3 23 0.00049 38.8 3.0 6 436-441 13-18 (2365)
259 PF02714 DUF221: Domain of unk 41.8 45 0.00099 31.7 5.0 57 68-134 1-57 (325)
260 KOG4008 rRNA processing protei 41.4 27 0.00059 30.7 2.9 37 18-54 35-71 (261)
261 COG5193 LHP1 La protein, small 40.9 12 0.00027 35.5 0.9 65 20-84 171-245 (438)
262 KOG4019 Calcineurin-mediated s 40.8 21 0.00046 30.0 2.1 74 24-103 11-90 (193)
263 KOG4483 Uncharacterized conser 40.1 1.2E+02 0.0026 29.2 6.9 56 110-171 390-446 (528)
264 PF14893 PNMA: PNMA 40.1 18 0.00039 34.2 1.8 66 1-75 1-72 (331)
265 KOG4213 RNA-binding protein La 40.0 37 0.0008 28.5 3.3 69 307-380 113-183 (205)
266 PF07777 MFMR: G-box binding p 39.7 1.3E+02 0.0028 25.8 6.6 9 440-448 62-70 (189)
267 PRK11901 hypothetical protein; 38.2 63 0.0014 30.3 4.9 54 315-370 252-308 (327)
268 PF03468 XS: XS domain; Inter 37.7 97 0.0021 24.3 5.3 40 123-164 29-68 (116)
269 KOG2295 C2H2 Zn-finger protein 37.5 6.4 0.00014 39.0 -1.6 68 304-371 230-298 (648)
270 PF00403 HMA: Heavy-metal-asso 37.3 1.1E+02 0.0024 20.3 5.1 54 307-365 1-58 (62)
271 PF15513 DUF4651: Domain of un 36.7 83 0.0018 21.4 4.0 22 125-146 8-29 (62)
272 PRK10905 cell division protein 35.3 63 0.0014 30.2 4.4 52 34-86 255-307 (328)
273 PRK11901 hypothetical protein; 35.0 1.5E+02 0.0032 27.9 6.7 64 20-87 242-306 (327)
274 KOG3895 Synaptic vesicle prote 34.5 2.1E+02 0.0047 27.1 7.6 14 331-344 344-357 (488)
275 cd00187 TOP4c DNA Topoisomeras 34.5 1E+02 0.0022 30.8 6.1 61 23-85 225-289 (445)
276 KOG3424 40S ribosomal protein 32.3 1.5E+02 0.0033 23.0 5.2 46 34-80 34-84 (132)
277 PRK10629 EnvZ/OmpR regulon mod 31.9 2.2E+02 0.0048 22.8 6.5 69 307-382 37-109 (127)
278 PRK10905 cell division protein 31.6 1.2E+02 0.0025 28.5 5.4 57 307-368 249-308 (328)
279 PRK09630 DNA topoisomerase IV 31.0 1.4E+02 0.0031 29.7 6.2 60 23-85 220-282 (479)
280 TIGR02542 B_forsyth_147 Bacter 30.2 18 0.0004 27.6 0.2 54 22-75 64-129 (145)
281 PTZ00191 60S ribosomal protein 29.6 1.3E+02 0.0029 24.5 4.9 54 308-363 84-139 (145)
282 PF08734 GYD: GYD domain; Int 29.5 1.5E+02 0.0033 22.0 4.9 46 319-367 22-68 (91)
283 PF11411 DNA_ligase_IV: DNA li 28.8 45 0.00098 19.8 1.6 17 33-49 19-35 (36)
284 PF02714 DUF221: Domain of unk 28.2 81 0.0017 30.0 4.3 34 246-281 1-34 (325)
285 PF08544 GHMP_kinases_C: GHMP 28.1 2.1E+02 0.0046 20.3 5.6 44 38-86 37-80 (85)
286 PF00585 Thr_dehydrat_C: C-ter 27.3 1.9E+02 0.0042 21.4 5.2 50 39-88 23-74 (91)
287 COG3266 DamX Uncharacterized p 27.3 2.7E+02 0.0059 25.4 6.8 61 20-86 208-271 (292)
288 COG5507 Uncharacterized conser 27.2 90 0.0019 23.2 3.2 22 64-85 65-86 (117)
289 KOG3546 Collagens (type XV) [E 27.1 3.6E+02 0.0077 27.9 8.3 31 154-184 239-269 (1167)
290 PF03439 Spt5-NGN: Early trans 26.6 1.9E+02 0.0041 21.0 5.0 37 331-371 33-69 (84)
291 PRK09631 DNA topoisomerase IV 26.3 2E+02 0.0042 30.3 6.7 94 23-133 220-317 (635)
292 KOG4365 Uncharacterized conser 25.8 13 0.00027 35.8 -1.7 78 23-101 3-80 (572)
293 COG5470 Uncharacterized conser 25.5 1.6E+02 0.0034 22.0 4.2 44 39-84 24-72 (96)
294 PF14026 DUF4242: Protein of u 25.1 2.6E+02 0.0057 20.0 8.3 63 25-90 2-71 (77)
295 PF10915 DUF2709: Protein of u 24.4 1.1E+02 0.0025 25.9 3.7 55 49-117 36-90 (238)
296 COG5193 LHP1 La protein, small 24.3 41 0.00088 32.3 1.3 58 307-364 176-244 (438)
297 PRK11230 glycolate oxidase sub 23.8 1.8E+02 0.004 29.6 6.0 49 319-367 203-255 (499)
298 PF07872 DUF1659: Protein of u 23.3 97 0.0021 19.7 2.5 40 92-131 5-44 (47)
299 smart00434 TOP4c DNA Topoisome 22.9 1.9E+02 0.004 29.1 5.7 61 24-85 233-297 (445)
300 COG2608 CopZ Copper chaperone 21.8 2E+02 0.0044 20.0 4.2 45 306-355 4-48 (71)
301 cd04880 ACT_AAAH-PDT-like ACT 21.6 2.9E+02 0.0062 19.2 5.8 52 35-87 11-66 (75)
302 PF09902 DUF2129: Uncharacteri 20.9 1.5E+02 0.0033 20.9 3.3 39 43-90 16-54 (71)
303 KOG3598 Thyroid hormone recept 20.8 81 0.0018 35.8 2.8 108 395-502 1993-2178(2220)
304 KOG0608 Warts/lats-like serine 20.6 8.8E+02 0.019 25.8 9.6 13 362-374 172-184 (1034)
305 PF08734 GYD: GYD domain; Int 20.4 3.7E+02 0.0079 19.9 6.0 46 37-86 22-68 (91)
306 KOG4590 Signal transduction pr 20.1 3.8E+02 0.0083 26.4 6.9 22 351-372 78-106 (409)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.2e-68 Score=543.40 Aligned_cols=373 Identities=64% Similarity=1.037 Sum_probs=340.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 103 (507)
.+|||+|||.+++|++|+++|++||.|.+|+|++|..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.|+..+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeE
Q 010577 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183 (507)
Q Consensus 104 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~ 183 (507)
...+....++|||+||+.++++++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.+++..+.++.+.
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 88888888899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EeeecccccchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHH
Q 010577 184 VGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263 (507)
Q Consensus 184 v~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 263 (507)
+.....+..+. .......++|||+||+.++++++|+++|+.||.|.++.+..+.++.++|||||+|.+.++|.+|++.+
T Consensus 161 v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 161 VGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred Eeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 97766554443 22344567899999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCCCC----CceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEee
Q 010577 264 NGKKFD----DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMR 339 (507)
Q Consensus 264 ~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 339 (507)
++..+. ++.+.+.++...........................++|||+||++++|+++|+++|+.||.|++|+++.
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 999999 9999999988777665555544444444444456678899999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhchHHHHHHHHHHHhc
Q 010577 340 DPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFAQ 397 (507)
Q Consensus 340 ~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~ 397 (507)
+.+|+++|||||+|.+.++|.+|++.+||+.++|+.|.|.++..+..+....+.++.+
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q 377 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQ 377 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888777766655
No 2
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.1e-49 Score=391.57 Aligned_cols=349 Identities=19% Similarity=0.262 Sum_probs=279.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc--CCCCCCCcceEeec
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML--NFTPLNGKPIRVMY 99 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~g~~~~v~~ 99 (507)
++++|||+|||+++++++|+++|+.||.|.+|.++++ +++|||+|.+.++|.+|++.+ ++..+.|++|+|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4799999999999999999999999999999999864 359999999999999999975 67889999999999
Q ss_pred ccCCccccc----------CCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHH
Q 010577 100 SHRDPSLRK----------SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAI 169 (507)
Q Consensus 100 ~~~~~~~~~----------~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~ 169 (507)
+......+. .....|+|.||+..+|+++|+++|+.||.|.+|.+..+. ..++|||+|.+.++|.+|+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAK 151 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHH
Confidence 864421111 122368999999999999999999999999999987753 2468999999999999999
Q ss_pred HHhcCCccCCc--eeEEeeeccccc--------------------chh----------h---------------------
Q 010577 170 EKLNGMLLNDK--QVYVGHFLRKQE--------------------RDT----------E--------------------- 196 (507)
Q Consensus 170 ~~l~~~~~~~~--~i~v~~~~~~~~--------------------~~~----------~--------------------- 196 (507)
+.|+|..+.+. .++|.++....- +.. .
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGP 231 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCC
Confidence 99999998653 566655432110 000 0
Q ss_pred --------------------------------------hccCccceEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEEEC
Q 010577 197 --------------------------------------INKSKFTNVYVKNLSE-STTEEDLQKSFGEYGTITSAVVMRD 237 (507)
Q Consensus 197 --------------------------------------~~~~~~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~~~~~~~ 237 (507)
.....+.+|+|+||+. .+++++|+++|+.||.|.++.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 232 LAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 0011346899999997 6999999999999999999999876
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHh---------HHHHHhh----------HH
Q 010577 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK---------HQFEQNM----------KE 298 (507)
Q Consensus 238 ~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~~~~----------~~ 298 (507)
. +|+|||+|.+.++|..|+..|++..+.|+.+.|.++........... ....... ..
T Consensus 312 ~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~ 387 (481)
T TIGR01649 312 K----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANK 387 (481)
T ss_pred C----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccc
Confidence 3 57999999999999999999999999999999988754321100000 0000000 00
Q ss_pred hhhccCCcceEEecCCCCCCHHHHHhcccCCCC--eeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcc-
Q 010577 299 AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGS--ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP- 375 (507)
Q Consensus 299 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~- 375 (507)
.....++.+|||+|||+.+|+++|+++|+.||. |..|++....++ .+++|||+|++.++|.+|+..|||..+.++.
T Consensus 388 ~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~ 466 (481)
T TIGR01649 388 NNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNG 466 (481)
T ss_pred cccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCC
Confidence 001135678999999999999999999999998 888988766544 5789999999999999999999999999986
Q ss_pred -----eeeehhhch
Q 010577 376 -----LYVALAQRK 384 (507)
Q Consensus 376 -----i~v~~~~~~ 384 (507)
|+|+|++++
T Consensus 467 ~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 467 SAPYHLKVSFSTSR 480 (481)
T ss_pred CccceEEEEeccCC
Confidence 999998753
No 3
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-47 Score=360.03 Aligned_cols=357 Identities=66% Similarity=1.042 Sum_probs=328.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 103 (507)
..|||+ ++++|.+|+++|+.+|+|.+|++++|. + +.|||||.|.+.++|.+||+++|...+.|++++|.|+..+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999997 6 9999999999999999999999999999999999999998
Q ss_pred cccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeE
Q 010577 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183 (507)
Q Consensus 104 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~ 183 (507)
+.. |||.||+..++.++|.++|+.||.|.+|++..+.+| ++|| ||+|+++++|.+|++.++|..+.++.|.
T Consensus 76 ~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 76 PSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred Cce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 777 999999999999999999999999999999999888 8999 9999999999999999999999999999
Q ss_pred Eeeecccccchhhh--ccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHH
Q 010577 184 VGHFLRKQERDTEI--NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVE 261 (507)
Q Consensus 184 v~~~~~~~~~~~~~--~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~ 261 (507)
+.....+..+.... .....+++++.+++.+.+++.|..+|..+|.|..+.++.+..+.+++|+||.|.+.++|..|+.
T Consensus 147 vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 147 VGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred EeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHH
Confidence 98877766544322 3345677999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC
Q 010577 262 ALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341 (507)
Q Consensus 262 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 341 (507)
.+++..+.+..+.|..+....+.......................+|||.|++..++++.|+++|+.||.|.++++..+.
T Consensus 227 ~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred hccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 99999999999999999987777777777766666666667788899999999999999999999999999999999999
Q ss_pred CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhchHHHHHHHHHHH
Q 010577 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQF 395 (507)
Q Consensus 342 ~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~ 395 (507)
.|+++||+||+|.+.++|.+|+..+|+..+.++.+.|.++.....+..+.+..+
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~~~~~ 360 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARLQAVF 360 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhhhhhc
Confidence 999999999999999999999999999999999999999986666665555544
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.4e-44 Score=349.78 Aligned_cols=340 Identities=26% Similarity=0.431 Sum_probs=232.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
+.++|||+|||.++++++|+++|+.||+|.+|++++++.+++++|||||+|.+.++|.+|++.||+..+.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCccCCc
Q 010577 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180 (507)
Q Consensus 102 ~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~ 180 (507)
.... .....+|||+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|..|++.|++..+.++
T Consensus 82 ~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 5432 2235689999999999999999999999999999998884 678999999999999999999999999988874
Q ss_pred --eeEEeeecccccchhhhccCccce-----EEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCH
Q 010577 181 --QVYVGHFLRKQERDTEINKSKFTN-----VYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENS 253 (507)
Q Consensus 181 --~i~v~~~~~~~~~~~~~~~~~~~~-----l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~ 253 (507)
.+.+.++................. .....++..+... ..+.+..... ........+......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~~ 228 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAA-------GIGPMHHAAA----RFRPSAGDFTAVLAH 228 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCcccccccc-------CCCCccCccc----ccccCcchhhhhhhh
Confidence 456655543321110000000000 0000000000000 0000000000 000000000000000
Q ss_pred HHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCee
Q 010577 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333 (507)
Q Consensus 254 ~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~ 333 (507)
........... ............. ................+.+|||+|||+++++++|+++|++||.|+
T Consensus 229 --------~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~ 297 (352)
T TIGR01661 229 --------QQQQHAVAQQH--AAQRASPPATDGQ-TAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ 297 (352)
T ss_pred --------hhhhccccccc--ccccCCCcccccc-ccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE
Confidence 00000000000 0000000000000 000000000001112344799999999999999999999999999
Q ss_pred EEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhchH
Q 010577 334 SCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (507)
Q Consensus 334 ~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~ 385 (507)
+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|+..+.
T Consensus 298 ~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 298 NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 99999998 89999999999999999999999999999999999999997654
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.4e-42 Score=354.76 Aligned_cols=258 Identities=41% Similarity=0.679 Sum_probs=229.8
Q ss_pred cEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecccc
Q 010577 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191 (507)
Q Consensus 113 ~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~ 191 (507)
+|||+|||.++|+++|+++|+.||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.+++..+.|+.|++.|.....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999995 48899999999999999999999999999999999998875432
Q ss_pred cchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCc
Q 010577 192 ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDK 271 (507)
Q Consensus 192 ~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~ 271 (507)
........+|||+||+.++++++|+++|+.||.|.++.+..+.+++++|||||+|.+.++|..|+..+++..+.++
T Consensus 82 ----~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~ 157 (562)
T TIGR01628 82 ----SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK 157 (562)
T ss_pred ----cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCc
Confidence 2233445679999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEE
Q 010577 272 EWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFV 351 (507)
Q Consensus 272 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv 351 (507)
.+.+.......... .......++|||+||+.++|+++|+++|+.||.|.++.+..+.+|+++|||||
T Consensus 158 ~i~v~~~~~~~~~~-------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV 224 (562)
T TIGR01628 158 EVYVGRFIKKHERE-------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFV 224 (562)
T ss_pred eEEEeccccccccc-------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEE
Confidence 99987655443321 01122346799999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCceec----CcceeeehhhchHHH
Q 010577 352 AFSTPEEASRALLEMNGKMVV----SKPLYVALAQRKEDR 387 (507)
Q Consensus 352 ~f~~~~~A~~a~~~~~~~~~~----g~~i~v~~~~~~~~~ 387 (507)
+|++.++|.+|++.+||..+. |+.|.|.++..+..+
T Consensus 225 ~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 225 NFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred EECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhh
Confidence 999999999999999999999 999999887655443
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=304.79 Aligned_cols=285 Identities=25% Similarity=0.392 Sum_probs=235.6
Q ss_pred EEeCCHHHHHHHHHHcCCCCCCCcceEeecccCCc--------ccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEE
Q 010577 70 VNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDP--------SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSC 141 (507)
Q Consensus 70 V~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~~--------~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v 141 (507)
-...+.++|.++|.+-. |..|.|+...++. .....-.+.|||+.||.++.+++|..+|++.|+|.++
T Consensus 39 ~~~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~el 113 (506)
T KOG0117|consen 39 AGVQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYEL 113 (506)
T ss_pred cccccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeE
Confidence 34445788888888632 3344554333221 1112334679999999999999999999999999999
Q ss_pred EEeeC-CCCCceeEEEEEECCHHHHHHHHHHhcCCcc-CCceeEEeeecccccchhhhccCccceEEEcCCCCCCCHHHH
Q 010577 142 KVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLL-NDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDL 219 (507)
Q Consensus 142 ~~~~~-~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l 219 (507)
+++.+ .+|.++|||||.|.+.++|++|++.|++..| .|+.|.|..+.. .++|||+|||++.++++|
T Consensus 114 RLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva------------n~RLFiG~IPK~k~keeI 181 (506)
T KOG0117|consen 114 RLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA------------NCRLFIGNIPKTKKKEEI 181 (506)
T ss_pred EEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee------------cceeEeccCCccccHHHH
Confidence 99999 6799999999999999999999999999877 577888855443 367999999999999999
Q ss_pred HHHhcccCC-eEEEEEEECC--CCCccceEEEEeCCHHHHHHHHHHHcCCC--CCCceeeeeccccchHHHHHHhHHHHH
Q 010577 220 QKSFGEYGT-ITSAVVMRDG--DGKSKCFGFVNFENSDDAARAVEALNGKK--FDDKEWYVGKAQKKSERELELKHQFEQ 294 (507)
Q Consensus 220 ~~~f~~~G~-v~~~~~~~~~--~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~ 294 (507)
++.+++.++ |..|.+..+. ..++||||||+|.++..|..|..+|-... +.+..+.|.|+.+..........
T Consensus 182 lee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms---- 257 (506)
T KOG0117|consen 182 LEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMS---- 257 (506)
T ss_pred HHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhh----
Confidence 999999887 6666666555 37899999999999999999999885544 56899999999876654333111
Q ss_pred hhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCc
Q 010577 295 NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374 (507)
Q Consensus 295 ~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~ 374 (507)
.-..|||+||+.++|+|.|+++|++||.|++|+.++| ||||.|.+.++|.+|++.+||+.|+|.
T Consensus 258 ---------~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 258 ---------KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGS 321 (506)
T ss_pred ---------heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCc
Confidence 1125999999999999999999999999999999988 999999999999999999999999999
Q ss_pred ceeeehhhchHHHHHHH
Q 010577 375 PLYVALAQRKEDRRARL 391 (507)
Q Consensus 375 ~i~v~~~~~~~~~~~~~ 391 (507)
.|.|.+|++...++..+
T Consensus 322 ~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 322 PIEVTLAKPVDKKKKER 338 (506)
T ss_pred eEEEEecCChhhhccch
Confidence 99999999988877664
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.2e-40 Score=322.59 Aligned_cols=299 Identities=23% Similarity=0.347 Sum_probs=242.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC-CcceEe
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN-GKPIRV 97 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~~~v 97 (507)
.....++|||+|||.+++|++|+++|++||.|.+|+|++| .+++++|||||+|.+.++|.+||+.||+..+. |+.+.|
T Consensus 54 ~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 54 QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 3455799999999999999999999999999999999999 78999999999999999999999999998885 777777
Q ss_pred ecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCc-eeEEEEeeC--CCCCceeEEEEEECCHHHHHHHHHHhcC
Q 010577 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN-ILSCKVATD--LNGQSKGYGFVQFDNEESAQKAIEKLNG 174 (507)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~-v~~v~~~~~--~~~~~~g~a~v~f~~~e~A~~A~~~l~~ 174 (507)
..+.. .++|||+|||+++++++|.+.|+.++. +.++.+... ..+.++|||||+|.+.++|..|++.|..
T Consensus 133 ~~S~~--------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 133 CISVD--------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred ccccc--------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 66543 368999999999999999999999863 445544433 2367899999999999999999988754
Q ss_pred --CccCCceeEEeeecccccchhhhccCccceEEEcCCCCCCCHHHHHHHhccc--CCeEEEEEEECCCCCccceEEEEe
Q 010577 175 --MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY--GTITSAVVMRDGDGKSKCFGFVNF 250 (507)
Q Consensus 175 --~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~~~g~afv~f 250 (507)
..+.++.|.|.|+........ .......+|||+||+.++++++|+++|++| |.|.++.++ ++||||+|
T Consensus 205 gki~l~Gr~I~VdwA~p~~~~d~-~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF 276 (578)
T TIGR01648 205 GRIQLWGHVIAVDWAEPEEEVDE-DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHF 276 (578)
T ss_pred cceEecCceEEEEeecccccccc-cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEe
Confidence 467899999999876544322 122345789999999999999999999999 999998776 35999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhH----------HHHHhhHHhhhccCCcceEEecCCCCCCHH
Q 010577 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKH----------QFEQNMKEAADKFQGANLYIKNLDDSIDDE 320 (507)
Q Consensus 251 ~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~ 320 (507)
.+.++|.+|++.+++..+.++.|.|.++.+.......... ................+++++|+++..+++
T Consensus 277 ~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~ 356 (578)
T TIGR01648 277 EDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYA 356 (578)
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCcccccccccccccccccc
Confidence 9999999999999999999999999999765432110000 000000011122346789999999999999
Q ss_pred HHHhcccCCCCeeE
Q 010577 321 KLKQLFSPFGSITS 334 (507)
Q Consensus 321 ~l~~~f~~~g~v~~ 334 (507)
.+.++|..+|.|..
T Consensus 357 ~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 357 PSLHFPRMPGPIRG 370 (578)
T ss_pred chhhccccCccccC
Confidence 99999999987553
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.2e-40 Score=275.30 Aligned_cols=317 Identities=29% Similarity=0.477 Sum_probs=238.6
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
+.+++.....+.|+|.-||...+++||+.+|...|+|++|++++|+.+|.+.||+||.|.+++||++|++.||+..+..+
T Consensus 32 ~~~~~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K 111 (360)
T KOG0145|consen 32 SSGNDTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK 111 (360)
T ss_pred CCCCCcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccc
Confidence 33556677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeC-CCCCceeEEEEEECCHHHHHHHHHHh
Q 010577 94 PIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKL 172 (507)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~~~~g~a~v~f~~~e~A~~A~~~l 172 (507)
+|+|.+++.+.. ......|+|++||+.+|..+|..+|+.||.|..-+|+.+ -+|-++|.+||.|...++|+.|++.|
T Consensus 112 TIKVSyARPSs~--~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 112 TIKVSYARPSSD--SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred eEEEEeccCChh--hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhc
Confidence 999999886532 234568999999999999999999999999887777777 46999999999999999999999999
Q ss_pred cCCccCCc--eeEEeeecccccchhhhccCccceEEEcCCCC-CCCHHHHHHHhcc----cC-CeEEEEEEECCCCCccc
Q 010577 173 NGMLLNDK--QVYVGHFLRKQERDTEINKSKFTNVYVKNLSE-STTEEDLQKSFGE----YG-TITSAVVMRDGDGKSKC 244 (507)
Q Consensus 173 ~~~~~~~~--~i~v~~~~~~~~~~~~~~~~~~~~l~v~~lp~-~~t~~~l~~~f~~----~G-~v~~~~~~~~~~~~~~g 244 (507)
+|..-.|. .|.|.++. -|. ..+..-|..+|.. |+ .+... ..+.|
T Consensus 190 NG~~P~g~tepItVKFan---------------------nPsq~t~~a~ls~ly~sp~rr~~Gp~hh~------~~r~r- 241 (360)
T KOG0145|consen 190 NGQKPSGCTEPITVKFAN---------------------NPSQKTNQALLSQLYQSPARRYGGPMHHQ------AQRFR- 241 (360)
T ss_pred cCCCCCCCCCCeEEEecC---------------------CcccccchhhhHHhhcCccccCCCcccch------hhhhc-
Confidence 99876654 34443322 221 1222223333321 11 10000 00000
Q ss_pred eEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHh
Q 010577 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324 (507)
Q Consensus 245 ~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~ 324 (507)
++..-....+...+....+++-..-+.... ......++||||-||..+++|.-|++
T Consensus 242 -----~~~~~~~~~~~~rfsP~~~d~m~~l~~~~l-------------------p~~~~~g~ciFvYNLspd~de~~LWQ 297 (360)
T KOG0145|consen 242 -----LDNLLNPHAAQARFSPMTIDGMSGLAGVNL-------------------PGGPGGGWCIFVYNLSPDADESILWQ 297 (360)
T ss_pred -----cccccchhhhhccCCCccccccceeeeecc-------------------CCCCCCeeEEEEEecCCCchHhHHHH
Confidence 000000111111111111111111110000 01112467999999999999999999
Q ss_pred cccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 325 LFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 325 ~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
+|.+||.|..|++++|- +++.+||+||.+.+.++|..|+..|||..+.+|.|.|+|+..+
T Consensus 298 lFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 298 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999998 6899999999999999999999999999999999999998643
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.7e-39 Score=289.62 Aligned_cols=255 Identities=27% Similarity=0.449 Sum_probs=230.6
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC-CCc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL-NGK 93 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~-~g~ 93 (507)
-........+.|||+.||.++.|+||+.+|.+.|+|.+++++.|+.+|.++|||||.|++.++|++|++.||...| .|+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 3444557789999999999999999999999999999999999999999999999999999999999999999877 788
Q ss_pred ceEeecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccC-ceeEEEEeeCCC--CCceeEEEEEECCHHHHHHHHH
Q 010577 94 PIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NILSCKVATDLN--GQSKGYGFVQFDNEESAQKAIE 170 (507)
Q Consensus 94 ~~~v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~--~~~~g~a~v~f~~~e~A~~A~~ 170 (507)
.|.|+.+..+ ++|||+|||++.++++|.+.+++.+ -|++|.+.++.+ .+++|||||+|.+...|.-|..
T Consensus 155 ~igvc~Svan--------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRr 226 (506)
T KOG0117|consen 155 LLGVCVSVAN--------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARR 226 (506)
T ss_pred EeEEEEeeec--------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHh
Confidence 8999887766 6899999999999999999999887 677888888753 6799999999999999999998
Q ss_pred Hh--cCCccCCceeEEeeecccccchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEE
Q 010577 171 KL--NGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248 (507)
Q Consensus 171 ~l--~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv 248 (507)
.| ....++|..+.|+|+.+......+ .-+....|||+||+.++|++.|+.+|++||.|.+|+.++| ||||
T Consensus 227 Kl~~g~~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFV 298 (506)
T KOG0117|consen 227 KLMPGKIKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFV 298 (506)
T ss_pred hccCCceeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEE
Confidence 87 346889999999999988777666 5556678999999999999999999999999999998855 9999
Q ss_pred EeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHH
Q 010577 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERE 285 (507)
Q Consensus 249 ~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~ 285 (507)
.|.++++|.+|++.+++..++|..|.|.++++.....
T Consensus 299 Hf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 299 HFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred eecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 9999999999999999999999999999998766544
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.1e-39 Score=315.00 Aligned_cols=281 Identities=23% Similarity=0.355 Sum_probs=227.9
Q ss_pred CHHHHHHHHHHcCCCCCCCcceEeecccCCc---ccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCC
Q 010577 74 NAQEAARALEMLNFTPLNGKPIRVMYSHRDP---SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQ 150 (507)
Q Consensus 74 ~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~~---~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~ 150 (507)
..++|.+|+.++++..+........+....+ .......++|||+|||+++++++|+++|+.||.|.+++|+.+.++.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 3688999999888776655544444432221 2223345789999999999999999999999999999999998899
Q ss_pred ceeEEEEEECCHHHHHHHHHHhcCCccC-CceeEEeeecccccchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCC-
Q 010577 151 SKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGT- 228 (507)
Q Consensus 151 ~~g~a~v~f~~~e~A~~A~~~l~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~- 228 (507)
++|||||+|.+.++|++|++.|++..+. ++.+.+..+. ..++|||+|||.++++++|.+.|++++.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~------------~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV------------DNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc------------cCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 9999999999999999999999998875 6666664332 2467999999999999999999999864
Q ss_pred eEEEEEEEC--CCCCccceEEEEeCCHHHHHHHHHHHcCC--CCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccC
Q 010577 229 ITSAVVMRD--GDGKSKCFGFVNFENSDDAARAVEALNGK--KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQ 304 (507)
Q Consensus 229 v~~~~~~~~--~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (507)
+.++.+... ..++++|||||+|.+.++|..|+..++.. .+.++.|.|.|+........ .....
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~-------------~~~~~ 232 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE-------------DVMAK 232 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc-------------ccccc
Confidence 444444332 23578999999999999999999888643 46789999998865432110 11123
Q ss_pred CcceEEecCCCCCCHHHHHhcccCC--CCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPF--GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
.++|||+||++++|+++|+++|+.| |.|++|+++++ ||||+|++.++|.+|++.||+..|.|+.|+|+|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg-------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD-------YAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC-------eEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4579999999999999999999999 99999988654 99999999999999999999999999999999998
Q ss_pred chHH
Q 010577 383 RKED 386 (507)
Q Consensus 383 ~~~~ 386 (507)
+...
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7543
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-38 Score=268.69 Aligned_cols=236 Identities=25% Similarity=0.475 Sum_probs=194.9
Q ss_pred CCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeec
Q 010577 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188 (507)
Q Consensus 109 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~ 188 (507)
...++|+|+||..++|++-|..||...|.|.+++++.+ ++.|.|+.
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWAT 49 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhcccccc
Confidence 45689999999999999999999999999999999865 23333333
Q ss_pred ccccchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCC
Q 010577 189 RKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKK 267 (507)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 267 (507)
....... ........+||+.|...++-++|++.|.+||+|.+.++++|. +++++||+||.|.+.++|+.|+..++|..
T Consensus 50 ~p~nQsk-~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 50 APGNQSK-PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW 128 (321)
T ss_pred CcccCCC-CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee
Confidence 3211111 111124568999999999999999999999999999999997 69999999999999999999999999999
Q ss_pred CCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcc
Q 010577 268 FDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRG 347 (507)
Q Consensus 268 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g 347 (507)
++.|.|+..|+..+...........++ .-......+|+||++||+.-+||++|++.|+.||.|.+|+++++ +|
T Consensus 129 lG~R~IRTNWATRKp~e~n~~~ltfde--V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qG 201 (321)
T KOG0148|consen 129 LGRRTIRTNWATRKPSEMNGKPLTFDE--VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QG 201 (321)
T ss_pred eccceeeccccccCccccCCCCccHHH--HhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cc
Confidence 999999999998877221111111111 11122456789999999999999999999999999999999998 78
Q ss_pred eEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhchHH
Q 010577 348 SGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKED 386 (507)
Q Consensus 348 ~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~~ 386 (507)
|+||.|++.|+|..||..+||..|+|..+++.|.+....
T Consensus 202 YaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 202 YAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred eEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 999999999999999999999999999999999876543
No 12
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.5e-37 Score=281.67 Aligned_cols=343 Identities=25% Similarity=0.425 Sum_probs=272.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 103 (507)
.||||++||.+++.++|.++|+.+|+|..+.++.+...+.++||+||.|.-.+|+++|+..+++..|.|+.++|..+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999999999999888899999999999999999999999999999999999876533
Q ss_pred cccc------------------------cCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEE
Q 010577 104 PSLR------------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQF 159 (507)
Q Consensus 104 ~~~~------------------------~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f 159 (507)
.... .-....|.|+|||+.+.+.+|..+|+.||.|.+|.|....+|.-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 2111 0014579999999999999999999999999999999888888889999999
Q ss_pred CCHHHHHHHHHHhcCCccCCceeEEeeecccccchh--------------------------------------------
Q 010577 160 DNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT-------------------------------------------- 195 (507)
Q Consensus 160 ~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~~~~~-------------------------------------------- 195 (507)
.+..+|..|++.+++..+.||.|.|.|+..+..-..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999866322100
Q ss_pred h------------------h----------------------ccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEE
Q 010577 196 E------------------I----------------------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM 235 (507)
Q Consensus 196 ~------------------~----------------------~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~ 235 (507)
. . +.....+|||+|||+++++++|...|++||.|..+.++
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0 0 00011469999999999999999999999999999888
Q ss_pred ECC-CCCccceEEEEeCCHHHHHHHHHHHc-----C-CCCCCceeeeeccccchHHHHH-HhH-----------------
Q 010577 236 RDG-DGKSKCFGFVNFENSDDAARAVEALN-----G-KKFDDKEWYVGKAQKKSERELE-LKH----------------- 290 (507)
Q Consensus 236 ~~~-~~~~~g~afv~f~~~~~a~~a~~~l~-----~-~~~~~~~~~v~~~~~~~~~~~~-~~~----------------- 290 (507)
.+. +++++|.|||.|.+..++..|+.... + ..+.||.+.|..+-...+.... ...
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG 405 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREG 405 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccC
Confidence 776 69999999999999999999998652 2 4467888888776543322111 000
Q ss_pred ---------------------HHHHhhH----HhhhccCCcceEEecCCCCCCHHHHHhccc----CC-CCeeE-EEEee
Q 010577 291 ---------------------QFEQNMK----EAADKFQGANLYIKNLDDSIDDEKLKQLFS----PF-GSITS-CKVMR 339 (507)
Q Consensus 291 ---------------------~~~~~~~----~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~----~~-g~v~~-~~~~~ 339 (507)
....... ...--...+.|.|.|||..++...|..++. .| +.+.. |+.+.
T Consensus 406 ~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~ 485 (678)
T KOG0127|consen 406 LIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIK 485 (678)
T ss_pred ccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhh
Confidence 0000000 001112456799999999999999988774 22 23332 34433
Q ss_pred CC----CCCCcceEEEEeCCHHHHHHHHHHh
Q 010577 340 DP----SGISRGSGFVAFSTPEEASRALLEM 366 (507)
Q Consensus 340 ~~----~g~~~g~afv~f~~~~~A~~a~~~~ 366 (507)
.. .+.+.||+|+.|..++.|.+|+..+
T Consensus 486 ~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 486 FLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 32 4678999999999999999999766
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.9e-36 Score=301.71 Aligned_cols=343 Identities=22% Similarity=0.309 Sum_probs=230.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
..++..++|||+|||..+++++|+++|+.||.|.+|+++.+..+++++|||||+|.+.++|.+|+. |++..+.|++|.|
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v 162 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIV 162 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEE
Confidence 345678999999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred ecccCCccc----------ccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHH
Q 010577 98 MYSHRDPSL----------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQ 166 (507)
Q Consensus 98 ~~~~~~~~~----------~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~ 166 (507)
..+...... ......+|||+|||..+++++|.++|+.||.|..|.+..+. +|.++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 876432111 11225789999999999999999999999999999999885 4689999999999999999
Q ss_pred HHHHHhcCCccCCceeEEeeecccccchhhhccCc-cceEEEcCCC-CCCCHHHHHHHhcccCCeEEEEEEECCCCCccc
Q 010577 167 KAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK-FTNVYVKNLS-ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKC 244 (507)
Q Consensus 167 ~A~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~-~~~l~v~~lp-~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g 244 (507)
.|++.|++..+.|+.|.|.++.............. ....--.... .......+...+...+..... .+....+ ..
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~ 319 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGL-LIPGTGS--KI 319 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccc-cCCCccc--hh
Confidence 99999999999999999998764322211100000 0000000000 111112222222221110000 0000000 00
Q ss_pred eEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCC------
Q 010577 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID------ 318 (507)
Q Consensus 245 ~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~------ 318 (507)
..+.. +.........+......... ...................+|+|.||-...+
T Consensus 320 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~ 381 (457)
T TIGR01622 320 ALMQK-------------LQRDGIIDPNIPSRYATGAL-----AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNF 381 (457)
T ss_pred hhhcc-------------cccccccccccccccccccc-----ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchH
Confidence 00000 00000000000000000000 0000000000000123456899999965443
Q ss_pred ----HHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhchH
Q 010577 319 ----DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (507)
Q Consensus 319 ----~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~ 385 (507)
.+||++.|++||.|++|.+... ...|++||+|.+.++|.+|++.|||+.|+|+.|.+.|.....
T Consensus 382 ~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 382 DNEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 3689999999999999998743 256899999999999999999999999999999999986543
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=272.94 Aligned_cols=363 Identities=25% Similarity=0.370 Sum_probs=239.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCC-CCCC--cceE
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT-PLNG--KPIR 96 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~-~~~g--~~~~ 96 (507)
+...-++||+-||..++|.||+++|.+||.|.+|.+.+|+.++.++|||||.|.+.++|.+|+..|+.. .|-| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 367789999999999999999999999999999999999999999999999999999999999999864 4555 4677
Q ss_pred eecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCC-
Q 010577 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM- 175 (507)
Q Consensus 97 v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~- 175 (507)
|++++..... ....++|||+.|++.++|.+++++|++||.|++|.|.++.++.++|||||.|++.|.|..|++.||+.
T Consensus 111 vk~Ad~E~er-~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 111 VKYADGERER-IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ecccchhhhc-cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 7777654332 24568999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ccC--CceeEEeeecccccchhhhc--cCccceEE-----------------------------------EcCCCC--CC
Q 010577 176 LLN--DKQVYVGHFLRKQERDTEIN--KSKFTNVY-----------------------------------VKNLSE--ST 214 (507)
Q Consensus 176 ~~~--~~~i~v~~~~~~~~~~~~~~--~~~~~~l~-----------------------------------v~~lp~--~~ 214 (507)
.+. ...+.|.|+..+..+..... .....-.. +++++. ..
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 333 34688888876655433221 00000001 111111 01
Q ss_pred CHHHHHHH--hcccCCeEEEEEEECCCC------Cc---------cceEEEEeC--CH--HHHHHHHHHHcCCCCC-Cce
Q 010577 215 TEEDLQKS--FGEYGTITSAVVMRDGDG------KS---------KCFGFVNFE--NS--DDAARAVEALNGKKFD-DKE 272 (507)
Q Consensus 215 t~~~l~~~--f~~~G~v~~~~~~~~~~~------~~---------~g~afv~f~--~~--~~a~~a~~~l~~~~~~-~~~ 272 (507)
+...+... ......-..-.. ....+ .+ ..+++-.-. +. -...-++..+-+.... ++.
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~-~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~ 348 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTA-SSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLA 348 (510)
T ss_pred chhHHHHHHHhhhhcccccCCC-CCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccc
Confidence 11111110 111100000000 00000 00 000000000 00 0000001110000000 000
Q ss_pred -------eeeec----------cccchHHHHHHhH--------------------------HHHHhhHHhhhccCCcceE
Q 010577 273 -------WYVGK----------AQKKSERELELKH--------------------------QFEQNMKEAADKFQGANLY 309 (507)
Q Consensus 273 -------~~v~~----------~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~l~ 309 (507)
..... ............. ..........+...+.+||
T Consensus 349 ~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlf 428 (510)
T KOG0144|consen 349 GGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLF 428 (510)
T ss_pred cccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCcccee
Confidence 00000 0000000000000 0000011123455678899
Q ss_pred EecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 310 v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
|.+||.+.-+.+|-..|..||.|.+.+++.|+ +|.++.|+||.|++..+|.+||..|||+.++.++++|.+++.+
T Consensus 429 iyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 429 IYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred eeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 99999999999999999999999999999998 9999999999999999999999999999999999999988754
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.9e-35 Score=289.99 Aligned_cols=172 Identities=24% Similarity=0.455 Sum_probs=155.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
+....++|||+|||+++++++|+++|++||.|.+|+++.+..+++++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCccc---------ccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHH
Q 010577 99 YSHRDPSL---------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKA 168 (507)
Q Consensus 99 ~~~~~~~~---------~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A 168 (507)
+....... .....++|||+||+.++++++|+++|+.||.|.++++..+. ++.++|||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 65432211 11234689999999999999999999999999999999985 578999999999999999999
Q ss_pred HHHhcCCccCCceeEEeeeccc
Q 010577 169 IEKLNGMLLNDKQVYVGHFLRK 190 (507)
Q Consensus 169 ~~~l~~~~~~~~~i~v~~~~~~ 190 (507)
++.+++..++|+.|+|.++...
T Consensus 263 I~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCC
Confidence 9999999999999999877653
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.6e-35 Score=294.45 Aligned_cols=262 Identities=20% Similarity=0.330 Sum_probs=209.2
Q ss_pred CCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHh--cCCccCCceeEEeeec
Q 010577 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL--NGMLLNDKQVYVGHFL 188 (507)
Q Consensus 111 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l--~~~~~~~~~i~v~~~~ 188 (507)
++.|||+|||+++++++|+++|+.||.|.+|.++.+ +++|||+|.+.++|.+|++.+ ++..+.|+.|.|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 468999999999999999999999999999999863 689999999999999999875 6789999999999886
Q ss_pred ccccchhh------hccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHH
Q 010577 189 RKQERDTE------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEA 262 (507)
Q Consensus 189 ~~~~~~~~------~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 262 (507)
.+...... .......+|+|.||+.++++++|+++|+.||.|.++.+.++.. +++|||+|.+.++|.+|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHHHHHH
Confidence 54322211 1122345799999999999999999999999999999887532 46899999999999999999
Q ss_pred HcCCCCCCc--eeeeeccccchHH--------------------HHHHh----HHHHHh---------------------
Q 010577 263 LNGKKFDDK--EWYVGKAQKKSER--------------------ELELK----HQFEQN--------------------- 295 (507)
Q Consensus 263 l~~~~~~~~--~~~v~~~~~~~~~--------------------~~~~~----~~~~~~--------------------- 295 (507)
|++..+.+. .+++.++...... ..... ......
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 999998653 6666665431100 00000 000000
Q ss_pred ---------------hH-----------------HhhhccCCcceEEecCCC-CCCHHHHHhcccCCCCeeEEEEeeCCC
Q 010577 296 ---------------MK-----------------EAADKFQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPS 342 (507)
Q Consensus 296 ---------------~~-----------------~~~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~ 342 (507)
.. .......+++|||+||++ .+|+++|+++|+.||.|.+|+++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-- 311 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-- 311 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--
Confidence 00 000012567899999997 6999999999999999999999987
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 343 GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 343 g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
.+|+|||+|.+.++|.+|+..|||..+.|+.|+|++++..
T Consensus 312 --~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 --KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred --CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 4689999999999999999999999999999999998643
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=266.32 Aligned_cols=277 Identities=26% Similarity=0.435 Sum_probs=229.4
Q ss_pred CcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeeccc
Q 010577 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (507)
Q Consensus 112 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~ 190 (507)
.+|||++||+.++.++|.++|+..|+|..+.++.+. ++.++||+||.|+-.||+++|++.+.+..+.|+.|.+..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 689999999999999999999999999999999995 4689999999999999999999999999999999999877654
Q ss_pred ccchhh-----------h-------c--cCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEe
Q 010577 191 QERDTE-----------I-------N--KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNF 250 (507)
Q Consensus 191 ~~~~~~-----------~-------~--~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f 250 (507)
...... + . ...--.|+|+|||+.+...+|..+|+.||.|.+|.|.+..++...|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 332210 0 0 1123469999999999999999999999999999999988988889999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHH---------HHHh---------------------hHH--
Q 010577 251 ENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ---------FEQN---------------------MKE-- 298 (507)
Q Consensus 251 ~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~---------------------~~~-- 298 (507)
....+|..|++.+++..|+||.+.|.|+-.+.......... .+.. ..+
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 99999999999999999999999999986543222110000 0000 000
Q ss_pred ----------------------------------------hhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEe
Q 010577 299 ----------------------------------------AADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVM 338 (507)
Q Consensus 299 ----------------------------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~ 338 (507)
..+...+.+|||+|||+++|+++|.++|+.||.|.++.++
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0000113579999999999999999999999999999999
Q ss_pred eCC-CCCCcceEEEEeCCHHHHHHHHHHh-----CC-ceecCcceeeehhhchHHHH
Q 010577 339 RDP-SGISRGSGFVAFSTPEEASRALLEM-----NG-KMVVSKPLYVALAQRKEDRR 388 (507)
Q Consensus 339 ~~~-~g~~~g~afv~f~~~~~A~~a~~~~-----~~-~~~~g~~i~v~~~~~~~~~~ 388 (507)
.++ +|.++|.|||.|.+..+|.+||+.. .| ..++||-|.|..+-.+..-.
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~ 382 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAA 382 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHH
Confidence 998 8999999999999999999999877 24 77899999999987665443
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=4.5e-33 Score=282.75 Aligned_cols=257 Identities=22% Similarity=0.385 Sum_probs=207.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcC------------CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQM------------GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~------------G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 84 (507)
...++..++|||+|||+.+++++|+++|+.+ +.|..+.+ .+.+|||||+|.+.++|.+||.
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~- 241 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA- 241 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-
Confidence 3466788999999999999999999999874 34555544 3456799999999999999996
Q ss_pred cCCCCCCCcceEeecccCCcc---------------------------cccCCCCcEEEcCCCcccChHHHHhhhhccCc
Q 010577 85 LNFTPLNGKPIRVMYSHRDPS---------------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137 (507)
Q Consensus 85 l~~~~~~g~~~~v~~~~~~~~---------------------------~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~ 137 (507)
|++..|.|+.|+|........ ......++|||+|||..+++++|+++|+.||.
T Consensus 242 l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 321 (509)
T TIGR01642 242 LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD 321 (509)
T ss_pred CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 999999999999975432210 01123468999999999999999999999999
Q ss_pred eeEEEEeeC-CCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecccccchh---------------------
Q 010577 138 ILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDT--------------------- 195 (507)
Q Consensus 138 v~~v~~~~~-~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~~~~~--------------------- 195 (507)
|..+.++.+ .+|.++|||||+|.+.++|..|++.|++..+.|+.|.|.++........
T Consensus 322 i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (509)
T TIGR01642 322 LKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSI 401 (509)
T ss_pred eeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhh
Confidence 999999988 4688999999999999999999999999999999999987643221100
Q ss_pred -hhccCccceEEEcCCCCCC----------CHHHHHHHhcccCCeEEEEEEECC----CCCccceEEEEeCCHHHHHHHH
Q 010577 196 -EINKSKFTNVYVKNLSEST----------TEEDLQKSFGEYGTITSAVVMRDG----DGKSKCFGFVNFENSDDAARAV 260 (507)
Q Consensus 196 -~~~~~~~~~l~v~~lp~~~----------t~~~l~~~f~~~G~v~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~ 260 (507)
......+..|++.|+.... ..++|+++|++||.|..+.+.+.. .+...|++||+|.+.++|.+|+
T Consensus 402 ~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~ 481 (509)
T TIGR01642 402 LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAM 481 (509)
T ss_pred ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHH
Confidence 0012245678898885321 225789999999999999998753 2456789999999999999999
Q ss_pred HHHcCCCCCCceeeeecccc
Q 010577 261 EALNGKKFDDKEWYVGKAQK 280 (507)
Q Consensus 261 ~~l~~~~~~~~~~~v~~~~~ 280 (507)
..|+|..|.|+.|.+.+...
T Consensus 482 ~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 482 EGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHcCCCEECCeEEEEEEeCH
Confidence 99999999999999988653
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.1e-32 Score=279.93 Aligned_cols=269 Identities=18% Similarity=0.266 Sum_probs=207.5
Q ss_pred CCCCcEEEcCCCcccChHHHHhhhhcc------------CceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCc
Q 010577 109 SGAGNIFIKNLDKAIDHKALHDTFSAF------------GNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (507)
Q Consensus 109 ~~~~~v~v~nLp~~~t~~~l~~~f~~~------------G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~ 176 (507)
...++|||+|||..+|+++|.++|..+ +.|..+.+. ..+|||||+|.+.++|..|+. |++..
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al~-l~g~~ 246 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAMA-LDSII 246 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhhc-CCCeE
Confidence 346789999999999999999999875 234444443 358899999999999999995 99999
Q ss_pred cCCceeEEeeecccccch-----------------------hhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEE
Q 010577 177 LNDKQVYVGHFLRKQERD-----------------------TEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAV 233 (507)
Q Consensus 177 ~~~~~i~v~~~~~~~~~~-----------------------~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~ 233 (507)
+.|+.|.+.......... ........++|||+|||..+++++|+++|+.||.|..+.
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~ 326 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFN 326 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Confidence 999999986443221000 000122346899999999999999999999999999999
Q ss_pred EEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHh----------HHHHHhhHHhhhc
Q 010577 234 VMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELK----------HQFEQNMKEAADK 302 (507)
Q Consensus 234 ~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 302 (507)
++.+. ++.++|||||+|.+.++|..|+..|++..+.++.|.|.++........... .............
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGG 406 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccC
Confidence 98875 688999999999999999999999999999999999988753221100000 0000000001112
Q ss_pred cCCcceEEecCCCC--C--------CHHHHHhcccCCCCeeEEEEeeCC----CCCCcceEEEEeCCHHHHHHHHHHhCC
Q 010577 303 FQGANLYIKNLDDS--I--------DDEKLKQLFSPFGSITSCKVMRDP----SGISRGSGFVAFSTPEEASRALLEMNG 368 (507)
Q Consensus 303 ~~~~~l~v~~l~~~--~--------~~~~l~~~f~~~g~v~~~~~~~~~----~g~~~g~afv~f~~~~~A~~a~~~~~~ 368 (507)
.++.+|+|.|+... + ..++|+++|++||.|++|.|.++. .+.+.|++||+|++.++|.+|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 35667999999632 1 236899999999999999998753 345679999999999999999999999
Q ss_pred ceecCcceeeehhhc
Q 010577 369 KMVVSKPLYVALAQR 383 (507)
Q Consensus 369 ~~~~g~~i~v~~~~~ 383 (507)
..|+|+.|.|.|...
T Consensus 487 r~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFNDRVVVAAFYGE 501 (509)
T ss_pred CEECCeEEEEEEeCH
Confidence 999999999999864
No 20
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-32 Score=229.12 Aligned_cols=222 Identities=30% Similarity=0.522 Sum_probs=191.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
+..-|||||+||..+++|+-|..||+.+|.|+.++++.+ +++|.+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~w 47 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNW 47 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccc
Confidence 345689999999999999999999999999999988765 223333
Q ss_pred ccCCccc---ccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeC-CCCCceeEEEEEECCHHHHHHHHHHhcCC
Q 010577 100 SHRDPSL---RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM 175 (507)
Q Consensus 100 ~~~~~~~---~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~~~~g~a~v~f~~~e~A~~A~~~l~~~ 175 (507)
+...... ....+..+||+.|..+++.++|++.|..||+|.++++++| .+++++||+||.|-+.++|++|+..++|.
T Consensus 48 a~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq 127 (321)
T KOG0148|consen 48 ATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ 127 (321)
T ss_pred ccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe
Confidence 2221111 1112457999999999999999999999999999999999 57999999999999999999999999999
Q ss_pred ccCCceeEEeeecccccchhh----------hccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccce
Q 010577 176 LLNDKQVYVGHFLRKQERDTE----------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245 (507)
Q Consensus 176 ~~~~~~i~v~~~~~~~~~~~~----------~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~ 245 (507)
=|++|.|+..|+.++..+... .....+++|+++++...+++++|+..|+.||.|.+|++.++ +||
T Consensus 128 WlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGY 202 (321)
T KOG0148|consen 128 WLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGY 202 (321)
T ss_pred eeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cce
Confidence 999999999999998754322 12345678999999999999999999999999999999976 789
Q ss_pred EEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccc
Q 010577 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281 (507)
Q Consensus 246 afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~ 281 (507)
+||.|++.|+|.+|+..+|+..+.+..+++.|.+..
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 999999999999999999999999999999998643
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=263.10 Aligned_cols=330 Identities=26% Similarity=0.403 Sum_probs=262.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
-..+-+|||+|||+.++++||+.+| |||.|...+.|.+|...|++..|.|+-+.|..
T Consensus 224 i~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp 280 (725)
T KOG0110|consen 224 ISETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLP 280 (725)
T ss_pred HHhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecC
Confidence 3457789999999999999999999 68999999999999999999999999888754
Q ss_pred ccCCcccc------------------------------------------------------------------------
Q 010577 100 SHRDPSLR------------------------------------------------------------------------ 107 (507)
Q Consensus 100 ~~~~~~~~------------------------------------------------------------------------ 107 (507)
........
T Consensus 281 ~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~ 360 (725)
T KOG0110|consen 281 SKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRV 360 (725)
T ss_pred cchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhh
Confidence 32110000
Q ss_pred ---------------------cCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHH
Q 010577 108 ---------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQ 166 (507)
Q Consensus 108 ---------------------~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~ 166 (507)
......++++|||..+..++|...|..||.|..+.+. ..|. .++|+|.+..+|.
T Consensus 361 ~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~---~aiv~fl~p~eAr 435 (725)
T KOG0110|consen 361 VQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGT---GAIVEFLNPLEAR 435 (725)
T ss_pred chhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccc---eeeeeecCccchH
Confidence 0011468999999999999999999999999998443 2232 5999999999999
Q ss_pred HHHHHhcCCccCCceeEEeeecccccc----------------------h-h----------h----------hcc-Ccc
Q 010577 167 KAIEKLNGMLLNDKQVYVGHFLRKQER----------------------D-T----------E----------INK-SKF 202 (507)
Q Consensus 167 ~A~~~l~~~~~~~~~i~v~~~~~~~~~----------------------~-~----------~----------~~~-~~~ 202 (507)
.|...|....+....+.+.|....... . . . ... ...
T Consensus 436 ~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~ 515 (725)
T KOG0110|consen 436 KAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETE 515 (725)
T ss_pred HHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccc
Confidence 999999887776666655544322111 0 0 0 000 111
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCC----CccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeecc
Q 010577 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG----KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (507)
Q Consensus 203 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~----~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~ 278 (507)
+.||+.||.++++.+++...|...|.|.++.|....+. .+.||+||+|.+.++|..|+..|+|..++|..+.+.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 23999999999999999999999999999988776543 35699999999999999999999999999999999988
Q ss_pred ccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHH
Q 010577 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357 (507)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~ 357 (507)
......... ........++.|.|+|||+..+..+|+.+|..||.|.+|+|.... .+.++|||||+|-+.+
T Consensus 596 ~~k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 596 ENKPASTVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred cCccccccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 722211111 111111226789999999999999999999999999999999883 5668999999999999
Q ss_pred HHHHHHHHhCCceecCcceeeehhhchHH
Q 010577 358 EASRALLEMNGKMVVSKPLYVALAQRKED 386 (507)
Q Consensus 358 ~A~~a~~~~~~~~~~g~~i~v~~~~~~~~ 386 (507)
+|.+|+..|.+..+.||+|.+.|++....
T Consensus 667 ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 667 EAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHHHhhcccceechhhheehhccchH
Confidence 99999999999999999999999986655
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=4.1e-31 Score=247.41 Aligned_cols=171 Identities=29% Similarity=0.516 Sum_probs=154.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
......++|||+|||+++++++|+++|+.||.|++|+|++|..+++++|||||+|.++++|.+|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCc
Q 010577 98 MYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (507)
Q Consensus 98 ~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~ 176 (507)
.+++... ......+|||+|||..+|+++|+++|+.||.|..++++.+. ++.++++|||+|.+.++|++|++.|++..
T Consensus 182 ~~a~p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 182 SYARPGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred ecccccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 9876542 22345689999999999999999999999999999999885 78999999999999999999999999998
Q ss_pred cCC--ceeEEeeeccc
Q 010577 177 LND--KQVYVGHFLRK 190 (507)
Q Consensus 177 ~~~--~~i~v~~~~~~ 190 (507)
+.+ +.|.|.++...
T Consensus 260 ~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 260 PEGGSQPLTVRLAEEH 275 (346)
T ss_pred cCCCceeEEEEECCcc
Confidence 876 56777665543
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.9e-30 Score=240.61 Aligned_cols=250 Identities=40% Similarity=0.661 Sum_probs=225.0
Q ss_pred cEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeeccccc
Q 010577 113 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192 (507)
Q Consensus 113 ~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~~ 192 (507)
.|+|+ +++|+..|+++|+.+|+|.+++++.+. + +.|||||.|.++++|.+|++.++...+.|+.+++.|..+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 57788 899999999999999999999999999 6 999999999999999999999999999999999999765433
Q ss_pred chhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCce
Q 010577 193 RDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKE 272 (507)
Q Consensus 193 ~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~ 272 (507)
. ++|.||+.+++..+|.++|+.||.|.++.+..+.+| ++|| ||+|++++.|.+|+..++|..+.++.
T Consensus 78 ~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 78 L-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred e-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 3 999999999999999999999999999999999888 8999 99999999999999999999999999
Q ss_pred eeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEE
Q 010577 273 WYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352 (507)
Q Consensus 273 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~ 352 (507)
+.+........+...... .. ..-++++|.+++.++++++|.++|+.||.|.++.++.+..|++++|+||.
T Consensus 145 i~vg~~~~~~er~~~~~~-~~---------~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGE-YK---------KRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred eEEeeccchhhhcccccc-hh---------hhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 999988776655433322 11 12236999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCceecCcceeeehhhchHHHHHH
Q 010577 353 FSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390 (507)
Q Consensus 353 f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~ 390 (507)
|++.++|..|++.+|+..+.++.+.|.-+..+..+...
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~ 252 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAE 252 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccchhhHHH
Confidence 99999999999999999999999999988765544433
No 24
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.97 E-value=5.1e-30 Score=230.25 Aligned_cols=247 Identities=18% Similarity=0.234 Sum_probs=204.3
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~-~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
+++......-.|.+||+|||+++.+.+|+++|+ +.|.|+.|.++.| ..++++|||.|+|+++|.++||++.||+..+.
T Consensus 34 gs~~gn~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~ 112 (608)
T KOG4212|consen 34 GSQGGNVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVN 112 (608)
T ss_pred cCCCCCcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhcccc
Confidence 344444555667799999999999999999996 5689999999999 46999999999999999999999999999999
Q ss_pred CcceEeecccCCcccc----cCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHH
Q 010577 92 GKPIRVMYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167 (507)
Q Consensus 92 g~~~~v~~~~~~~~~~----~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~ 167 (507)
||+|.|.......... .......|++++-...-+..|...+..-|.+..-.+..+.++.+++..+++|+..-.+..
T Consensus 113 GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~ 192 (608)
T KOG4212|consen 113 GRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSS 192 (608)
T ss_pred CceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccch
Confidence 9999998665432211 123457899999999999999999998888888888888889999999999998888888
Q ss_pred HHHHhcCCccCCceeEEeeecccccchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEE
Q 010577 168 AIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGF 247 (507)
Q Consensus 168 A~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~af 247 (507)
++..........+.+.. +.......+||.+|...+....|.+.|.-.|.|..+.+.-++.+.++|++.
T Consensus 193 ~~~lfgl~~~Flr~~h~------------f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~v 260 (608)
T KOG4212|consen 193 NYNLFGLSASFLRSLHI------------FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAV 260 (608)
T ss_pred hhhcccchhhhhhhccC------------CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeE
Confidence 87754444433333332 233445678999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHcCCCCCCce
Q 010577 248 VNFENSDDAARAVEALNGKKFDDKE 272 (507)
Q Consensus 248 v~f~~~~~a~~a~~~l~~~~~~~~~ 272 (507)
++|+..-.|..|+..++..-+.+++
T Consensus 261 i~y~hpveavqaIsml~~~g~~~~~ 285 (608)
T KOG4212|consen 261 IEYDHPVEAVQAISMLDRQGLFDRR 285 (608)
T ss_pred EEecchHHHHHHHHhhccCCCcccc
Confidence 9999999999999988865544443
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=1.8e-29 Score=236.37 Aligned_cols=169 Identities=33% Similarity=0.552 Sum_probs=152.2
Q ss_pred ccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeee
Q 010577 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276 (507)
Q Consensus 198 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~ 276 (507)
.....++|||++||+++++++|+++|+.||.|.++.++.+. +++++|||||+|.+.++|.+|++.|++..+.++.|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34456789999999999999999999999999999998885 68899999999999999999999999999999999998
Q ss_pred ccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCC
Q 010577 277 KAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST 355 (507)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~ 355 (507)
++..... ....++|||+|||+.+|+++|+++|++||.|++|+|+++. +++++|||||+|++
T Consensus 183 ~a~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 183 YARPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred ccccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 8754221 1134579999999999999999999999999999999987 89999999999999
Q ss_pred HHHHHHHHHHhCCceecC--cceeeehhhch
Q 010577 356 PEEASRALLEMNGKMVVS--KPLYVALAQRK 384 (507)
Q Consensus 356 ~~~A~~a~~~~~~~~~~g--~~i~v~~~~~~ 384 (507)
.++|++|++.||+..+.+ +.|+|.+++..
T Consensus 245 ~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 245 REEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 999999999999998876 68999998764
No 26
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.96 E-value=2.2e-28 Score=218.21 Aligned_cols=349 Identities=22% Similarity=0.299 Sum_probs=259.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCC--CCCCCcce
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF--TPLNGKPI 95 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~~ 95 (507)
.....++.|++||||++++|+||.+++..||+|+.+.+.+++. .|||+|.++++|...+..... -.++|+++
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcce
Confidence 3455889999999999999999999999999999999987644 799999999999986665442 23577778
Q ss_pred EeecccCCcccc-------------------------------cCC-------CCcEEEcCCCcccChHHHHhhhhccCc
Q 010577 96 RVMYSHRDPSLR-------------------------------KSG-------AGNIFIKNLDKAIDHKALHDTFSAFGN 137 (507)
Q Consensus 96 ~v~~~~~~~~~~-------------------------------~~~-------~~~v~v~nLp~~~t~~~l~~~f~~~G~ 137 (507)
.|.+++...... ..+ -=.+.|.|+-..++-+-|..+|++||.
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 777764211000 000 013668999999999999999999999
Q ss_pred eeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecc-----------cccchhh----------
Q 010577 138 ILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR-----------KQERDTE---------- 196 (507)
Q Consensus 138 v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~-----------~~~~~~~---------- 196 (507)
|..|..+....+. .|+|+|.+.+.|+.|+..|+|..+.+..+.+....+ ...++..
T Consensus 177 VlKIiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~ 253 (492)
T KOG1190|consen 177 VLKIITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQ 253 (492)
T ss_pred eEEEEEEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccc
Confidence 9998887764443 599999999999999999999877655444321100 0000000
Q ss_pred -------------------------------------hccC-ccceEEEcCCC-CCCCHHHHHHHhcccCCeEEEEEEEC
Q 010577 197 -------------------------------------INKS-KFTNVYVKNLS-ESTTEEDLQKSFGEYGTITSAVVMRD 237 (507)
Q Consensus 197 -------------------------------------~~~~-~~~~l~v~~lp-~~~t~~~l~~~f~~~G~v~~~~~~~~ 237 (507)
.... .+..|.|.||. ..+|.+.|..+|.-||+|.+|.++.+
T Consensus 254 p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n 333 (492)
T KOG1190|consen 254 PSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN 333 (492)
T ss_pred cccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec
Confidence 0000 13557788886 45899999999999999999999987
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHH------------HHHhh----HHh-h
Q 010577 238 GDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQ------------FEQNM----KEA-A 300 (507)
Q Consensus 238 ~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~----~~~-~ 300 (507)
+.. .|+|++.+...|.-|++.|+|..+.|+.|++..++............ ..... +.- .
T Consensus 334 kkd----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~n 409 (492)
T KOG1190|consen 334 KKD----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQN 409 (492)
T ss_pred CCc----ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccc
Confidence 642 59999999999999999999999999999999886544221110000 00000 000 1
Q ss_pred hccCCcceEEecCCCCCCHHHHHhcccCCCCeeEE-EEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCc-ceee
Q 010577 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-PLYV 378 (507)
Q Consensus 301 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~-~i~v 378 (507)
-..++.+|.+.|+|.+++||+|++.|..-|...+. +++.+ .+.+|++.+.+.|+|..|+..+|++.+... .++|
T Consensus 410 i~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k----d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRv 485 (492)
T KOG1190|consen 410 IFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK----DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRV 485 (492)
T ss_pred cCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC----CcceeecccCChhHhhhhccccccccCCCCceEEE
Confidence 12355689999999999999999999888765444 44432 345999999999999999999999999855 9999
Q ss_pred ehhhc
Q 010577 379 ALAQR 383 (507)
Q Consensus 379 ~~~~~ 383 (507)
+|++.
T Consensus 486 SFSks 490 (492)
T KOG1190|consen 486 SFSKS 490 (492)
T ss_pred Eeecc
Confidence 99874
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.7e-29 Score=225.63 Aligned_cols=176 Identities=30% Similarity=0.558 Sum_probs=151.1
Q ss_pred CccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCC-CCC--ceeee
Q 010577 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKK-FDD--KEWYV 275 (507)
Q Consensus 200 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~--~~~~v 275 (507)
...-.+||+.+|+.++|.||+.+|++||.|.+|.+++|+ ++.++|||||.|.+.++|.+|+..|++.. +.| ..+.+
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 445579999999999999999999999999999999998 58899999999999999999999998765 433 45666
Q ss_pred eccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCC
Q 010577 276 GKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355 (507)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~ 355 (507)
.++....++. ....+|||+-|++.+||.||+++|++||.|++|+|++|.++.+||||||.|.+
T Consensus 112 k~Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 112 KYADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred cccchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 6664333221 23447999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCc-eecC--cceeeehhhchHHHHHHHH
Q 010577 356 PEEASRALLEMNGK-MVVS--KPLYVALAQRKEDRRARLQ 392 (507)
Q Consensus 356 ~~~A~~a~~~~~~~-~~~g--~~i~v~~~~~~~~~~~~~~ 392 (507)
.+.|..||+.|||. .+.| .+|.|+|+++++++..++.
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~l 214 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRL 214 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHH
Confidence 99999999999996 4444 6899999998777665543
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=2.1e-26 Score=226.44 Aligned_cols=177 Identities=24% Similarity=0.436 Sum_probs=151.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeecc
Q 010577 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (507)
Q Consensus 200 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~ 278 (507)
....+|||+||++++++++|+++|++||.|.++.++.+. +++++|||||+|.+.++|..|+..+++..+.|+.|.+.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 345689999999999999999999999999999998886 6889999999999999999999999999999999999864
Q ss_pred ccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHH
Q 010577 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357 (507)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~ 357 (507)
........... .........++|||+||+.++++++|+++|+.||.|.+|++.++. +|+++|||||+|.+.+
T Consensus 185 ~~~p~a~~~~~-------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 185 SNMPQAQPIID-------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred ccccccccccc-------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 32211100000 000111234689999999999999999999999999999999987 6789999999999999
Q ss_pred HHHHHHHHhCCceecCcceeeehhhc
Q 010577 358 EASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 358 ~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
+|.+|++.||+..++|+.|+|.++..
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 99999999999999999999998864
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=220.65 Aligned_cols=266 Identities=25% Similarity=0.388 Sum_probs=220.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
..+..+.|+|+|||..+..++|.++|..||.|..|.+... |. .|+|.|.+..+|.+|+..|....+..-++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 7788899999999999999999999999999999966532 32 59999999999999999998877777777776
Q ss_pred cccCCccc----------------------c-------------------------c-CCCCcEEEcCCCcccChHHHHh
Q 010577 99 YSHRDPSL----------------------R-------------------------K-SGAGNIFIKNLDKAIDHKALHD 130 (507)
Q Consensus 99 ~~~~~~~~----------------------~-------------------------~-~~~~~v~v~nLp~~~t~~~l~~ 130 (507)
|+..+-.. + . ...++|||.||.+++|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 65421000 0 0 0113399999999999999999
Q ss_pred hhhccCceeEEEEeeCCCCC----ceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecccccch---hhhccCccc
Q 010577 131 TFSAFGNILSCKVATDLNGQ----SKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERD---TEINKSKFT 203 (507)
Q Consensus 131 ~f~~~G~v~~v~~~~~~~~~----~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~~~~---~~~~~~~~~ 203 (507)
+|...|.|.++.|....++. +.|||||+|.+.++|+.|++.|+|..+.|+.|.+..+..+.... ........+
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccc
Confidence 99999999999998886554 55999999999999999999999999999999998776222111 111222357
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccch
Q 010577 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (507)
Q Consensus 204 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~ 282 (507)
.|+|+|||+.++..+|+.+|..||.+..+.+.... .+.++||+||.|.+.++|.+|+..|.+..+.||.+.+.|+....
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 89999999999999999999999999999998773 46679999999999999999999999999999999999998877
Q ss_pred HHHHHHhH
Q 010577 283 ERELELKH 290 (507)
Q Consensus 283 ~~~~~~~~ 290 (507)
........
T Consensus 695 ~~e~~r~r 702 (725)
T KOG0110|consen 695 TMEALRER 702 (725)
T ss_pred HHHHHHHH
Confidence 64444433
No 30
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=5.1e-26 Score=220.21 Aligned_cols=172 Identities=34% Similarity=0.538 Sum_probs=150.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC--cceEe
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG--KPIRV 97 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~~~v 97 (507)
....++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|++|++.||+..+.| +++.|
T Consensus 86 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v 165 (352)
T TIGR01661 86 SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITV 165 (352)
T ss_pred ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 3456789999999999999999999999999999999998888999999999999999999999999988877 45777
Q ss_pred ecccCCccc------------------c----------------------------------------------------
Q 010577 98 MYSHRDPSL------------------R---------------------------------------------------- 107 (507)
Q Consensus 98 ~~~~~~~~~------------------~---------------------------------------------------- 107 (507)
.++...... .
T Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
T TIGR01661 166 KFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRAS 245 (352)
T ss_pred EECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCC
Confidence 765422100 0
Q ss_pred --------------------cCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHH
Q 010577 108 --------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQ 166 (507)
Q Consensus 108 --------------------~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~ 166 (507)
.....+|||+|||.++++++|+++|+.||.|.+++++.+. ++.++|||||+|.+.++|.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 246 PPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred CccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 0011259999999999999999999999999999999996 7999999999999999999
Q ss_pred HHHHHhcCCccCCceeEEeeecccc
Q 010577 167 KAIEKLNGMLLNDKQVYVGHFLRKQ 191 (507)
Q Consensus 167 ~A~~~l~~~~~~~~~i~v~~~~~~~ 191 (507)
.|++.|+|..+.|+.|.|.+...+.
T Consensus 326 ~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 326 MAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999999887654
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=5.5e-27 Score=218.24 Aligned_cols=329 Identities=22% Similarity=0.319 Sum_probs=226.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
..++..|+|++.-|...+++.+|.+||+.+|+|..|.++.|...++++|.|||+|.+.+....||. |.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 456778899999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred ecccCCcc--------cc----cCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHH
Q 010577 98 MYSHRDPS--------LR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEES 164 (507)
Q Consensus 98 ~~~~~~~~--------~~----~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~ 164 (507)
..+-.... .. ..+-..++|+||-.+++++.|+.+|+.||.|..|.+..+. +|.++||+|++|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 86532211 11 0111238999999999999999999999999999999996 89999999999999999
Q ss_pred HHHHHHHhcCCccCCceeEEeeecccccchhh-hccCccceEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEEECCCCCc
Q 010577 165 AQKAIEKLNGMLLNDKQVYVGHFLRKQERDTE-INKSKFTNVYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRDGDGKS 242 (507)
Q Consensus 165 A~~A~~~l~~~~~~~~~i~v~~~~~~~~~~~~-~~~~~~~~l~v~~lp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~ 242 (507)
|.+|++.|+|..+.|+.|+|.....+...... .........--.+|+.. ....++..-|.+.-.+ .+.
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~---~~~------- 402 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGR---SLP------- 402 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCc---ccc-------
Confidence 99999999999999999998765554333222 00000000011122211 1122333322221111 111
Q ss_pred cceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCC--CC--
Q 010577 243 KCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS--ID-- 318 (507)
Q Consensus 243 ~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~--~~-- 318 (507)
.+...|..++..+......+....+.-..+... ...-..++-|+.+.|+=+. .|
T Consensus 403 --------s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~--------------~p~~~i~t~C~lL~nMFdpstete~ 460 (549)
T KOG0147|consen 403 --------STAISALLLLAKLASAAQFNGVVRVRSVDPADA--------------SPAFDIPTQCLLLSNMFDPSTETEP 460 (549)
T ss_pred --------chhhhHHHhccccchHHhhcCCcCccccCcccc--------------ccccCCccHHHHHhhcCCcccccCc
Confidence 111112222221111111110000000000000 0000023335555554221 11
Q ss_pred ------HHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 319 ------DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 319 ------~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
.+||.+.|.+||.|..|.+.++ +-|+.||.|.+.++|..|+.+|||+.|.|+.|..+|-..
T Consensus 461 n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 461 NWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred chhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 3678888899999999999776 458999999999999999999999999999999998753
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.2e-25 Score=195.08 Aligned_cols=270 Identities=21% Similarity=0.399 Sum_probs=212.0
Q ss_pred CcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeeccc
Q 010577 112 GNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (507)
Q Consensus 112 ~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~ 190 (507)
++|+|+.|.+++.++.|+..|..||+|++|.+..+. ++.++|||||+|+-+|.|+.|++.+++..++||.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 579999999999999999999999999999999995 7999999999999999999999999999999999999755443
Q ss_pred ccchhh-----hccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCC-CCccceEEEEeCCHHHHHHHHHHHc
Q 010577 191 QERDTE-----INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-GKSKCFGFVNFENSDDAARAVEALN 264 (507)
Q Consensus 191 ~~~~~~-----~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~ 264 (507)
...... .+....+++||..+..+.++++|++.|+.||+|.++.+-+..+ +.++||+|++|.+..+...|+..+|
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 222221 2334567899999999999999999999999999999999886 5689999999999999999999999
Q ss_pred CCCCCCceeeeeccccchHHHH-------------------HHhHHHHHh------------------------------
Q 010577 265 GKKFDDKEWYVGKAQKKSEREL-------------------ELKHQFEQN------------------------------ 295 (507)
Q Consensus 265 ~~~~~~~~~~v~~~~~~~~~~~-------------------~~~~~~~~~------------------------------ 295 (507)
-..++|..++|..+-....... ..+-.....
T Consensus 274 lFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~ 353 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLP 353 (544)
T ss_pred hhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCcc
Confidence 9889998888876532211100 000000000
Q ss_pred ------------------------------------------------------h-------------------------
Q 010577 296 ------------------------------------------------------M------------------------- 296 (507)
Q Consensus 296 ------------------------------------------------------~------------------------- 296 (507)
.
T Consensus 354 qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sAR 433 (544)
T KOG0124|consen 354 QAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSAR 433 (544)
T ss_pred ccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHH
Confidence 0
Q ss_pred ----HHhhhccCCcceEEecCC--CCCC---HHHHHhcccCCCCeeEEEEeeCCCCCC-----cceEEEEeCCHHHHHHH
Q 010577 297 ----KEAADKFQGANLYIKNLD--DSID---DEKLKQLFSPFGSITSCKVMRDPSGIS-----RGSGFVAFSTPEEASRA 362 (507)
Q Consensus 297 ----~~~~~~~~~~~l~v~~l~--~~~~---~~~l~~~f~~~g~v~~~~~~~~~~g~~-----~g~afv~f~~~~~A~~a 362 (507)
..-.....++.|.++|.- .+++ +.+|.+.|.+||.|.+|.|.....+.. .--.||+|....++.+|
T Consensus 434 hlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~ra 513 (544)
T KOG0124|consen 434 HLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRA 513 (544)
T ss_pred HHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHH
Confidence 000011123457888864 4444 478999999999999999887764321 11369999999999999
Q ss_pred HHHhCCceecCcceeeehh
Q 010577 363 LLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 363 ~~~~~~~~~~g~~i~v~~~ 381 (507)
++.|+|+.|.|+++..+..
T Consensus 514 k~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 514 KQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHhhccceecCceeehhhh
Confidence 9999999999999987654
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6.6e-25 Score=193.12 Aligned_cols=256 Identities=22% Similarity=0.456 Sum_probs=208.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
-.++|||+.|..++.|+.|+..|..||+|++|.+.+|..+++.+|||||+|+-.|.|..|++.+|+..+.||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCccc---------ccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCC-CCceeEEEEEECCHHHHHHHHHH
Q 010577 102 RDPSL---------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEK 171 (507)
Q Consensus 102 ~~~~~---------~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~~~~g~a~v~f~~~e~A~~A~~~ 171 (507)
+-... +.....+|+|..+-++++++||+..|+.||+|..|.+-...+ +.++||+|++|.+..+-..|+..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 33211 123456899999999999999999999999999999999976 66999999999999999999999
Q ss_pred hcCCccCCceeEEeeeccccc-----------------------------------------------------------
Q 010577 172 LNGMLLNDKQVYVGHFLRKQE----------------------------------------------------------- 192 (507)
Q Consensus 172 l~~~~~~~~~i~v~~~~~~~~----------------------------------------------------------- 192 (507)
++-..++|..++|........
T Consensus 272 MNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~ 351 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGT 351 (544)
T ss_pred cchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCC
Confidence 999999999888742211000
Q ss_pred -----------------------------------------------------chh------------------------
Q 010577 193 -----------------------------------------------------RDT------------------------ 195 (507)
Q Consensus 193 -----------------------------------------------------~~~------------------------ 195 (507)
...
T Consensus 352 l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~s 431 (544)
T KOG0124|consen 352 LPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSS 431 (544)
T ss_pred ccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCcc
Confidence 000
Q ss_pred --------hhccCccceEEEcCC--CCCCC---HHHHHHHhcccCCeEEEEEEECCCCCcc-----ceEEEEeCCHHHHH
Q 010577 196 --------EINKSKFTNVYVKNL--SESTT---EEDLQKSFGEYGTITSAVVMRDGDGKSK-----CFGFVNFENSDDAA 257 (507)
Q Consensus 196 --------~~~~~~~~~l~v~~l--p~~~t---~~~l~~~f~~~G~v~~~~~~~~~~~~~~-----g~afv~f~~~~~a~ 257 (507)
......++.+.++|+ |.+++ +.+|.+.|.+||.|.++.+...+.+... ---||+|+....+.
T Consensus 432 ARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~ 511 (544)
T KOG0124|consen 432 ARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETH 511 (544)
T ss_pred HHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHH
Confidence 001123344666776 33333 3578999999999999988776543211 12599999999999
Q ss_pred HHHHHHcCCCCCCceeeeec
Q 010577 258 RAVEALNGKKFDDKEWYVGK 277 (507)
Q Consensus 258 ~a~~~l~~~~~~~~~~~v~~ 277 (507)
++...|+|+.|+|+.+....
T Consensus 512 rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 512 RAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred HHHHhhccceecCceeehhh
Confidence 99999999999999976644
No 34
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.93 E-value=3.5e-24 Score=196.90 Aligned_cols=348 Identities=15% Similarity=0.201 Sum_probs=247.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
...-.|.+++|||++|++||.+||+-+ .|.++.+.+. +|++.|-|||+|.+++++++|++. +...+..|-|.|..+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 345678999999999999999999999 7788777664 799999999999999999999994 777777777888766
Q ss_pred cCCccc---------ccCCCCcEEEcCCCcccChHHHHhhhhccCceeE-EEEeeCCCCCceeEEEEEECCHHHHHHHHH
Q 010577 101 HRDPSL---------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVATDLNGQSKGYGFVQFDNEESAQKAIE 170 (507)
Q Consensus 101 ~~~~~~---------~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~-v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~ 170 (507)
...+.. .......|.+++||+.||++||.++|+..-.|.. |.+..+..++..|.|||+|++.+.|+.|+.
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 433211 1134568999999999999999999998865555 556667788999999999999999999998
Q ss_pred HhcCCccCCceeEEeeecccccchhh------------------------------------------------------
Q 010577 171 KLNGMLLNDKQVYVGHFLRKQERDTE------------------------------------------------------ 196 (507)
Q Consensus 171 ~l~~~~~~~~~i~v~~~~~~~~~~~~------------------------------------------------------ 196 (507)
. |...++.|.|.|-.+.....+...
T Consensus 164 r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~ 242 (510)
T KOG4211|consen 164 R-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSL 242 (510)
T ss_pred H-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccc
Confidence 4 666777777776322110000000
Q ss_pred ----------------h----------------c-cCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCcc
Q 010577 197 ----------------I----------------N-KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSK 243 (507)
Q Consensus 197 ----------------~----------------~-~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 243 (507)
. . ......+..++||...++.+|.++|+..-.+ .+++-...+++.+
T Consensus 243 ~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~T 321 (510)
T KOG4211|consen 243 QDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRAT 321 (510)
T ss_pred cccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccC
Confidence 0 0 0011458889999999999999999987554 7788888899999
Q ss_pred ceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHH-HHh--------------------H------HHHHhh
Q 010577 244 CFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL-ELK--------------------H------QFEQNM 296 (507)
Q Consensus 244 g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~-~~~--------------------~------~~~~~~ 296 (507)
|-|+|+|.+.++|..|+. -++..+..+-+............. ... . .+....
T Consensus 322 GEAdveF~t~edav~Ams-kd~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~~ 400 (510)
T KOG4211|consen 322 GEADVEFATGEDAVGAMG-KDGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGGRG 400 (510)
T ss_pred CcceeecccchhhHhhhc-cCCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccCCCCCcccc
Confidence 999999999999999984 344444444433322110000000 000 0 000000
Q ss_pred -----------------------HHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEe
Q 010577 297 -----------------------KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAF 353 (507)
Q Consensus 297 -----------------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f 353 (507)
........-..|..+++|...++.++.++|..+ ..-.|.+..|++....|-|-|.|
T Consensus 401 ~~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~-~~a~~~~~yd~~~~~~~~a~~~~ 479 (510)
T KOG4211|consen 401 SPYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPI-RPAQVELLYDHQFQRSGDARVIF 479 (510)
T ss_pred CCCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhccccc-CcccccccccccccccCceeEEE
Confidence 000001112358888999999999999999998 45678888898777788999999
Q ss_pred CCHHHHHHHHHHhCCceecCccee
Q 010577 354 STPEEASRALLEMNGKMVVSKPLY 377 (507)
Q Consensus 354 ~~~~~A~~a~~~~~~~~~~g~~i~ 377 (507)
.+.++++.|+.+ +...+.-+.|+
T Consensus 480 ~~~~~~q~a~~~-~~~~~~~~~~~ 502 (510)
T KOG4211|consen 480 YNRKDYQDALMK-DKQYMGERYIE 502 (510)
T ss_pred echhhhHHHHHh-hhhhhhhhhhh
Confidence 999999999843 33333334333
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.2e-25 Score=187.27 Aligned_cols=165 Identities=35% Similarity=0.643 Sum_probs=152.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeecccc
Q 010577 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (507)
Q Consensus 202 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~ 280 (507)
.++|.|.-||..+|.+|++++|...|+|+++++++++ +|.+-||+||.|.+.+||++|+..++|-.+..+.|+|.++.+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 4569999999999999999999999999999999998 699999999999999999999999999999999999999976
Q ss_pred chHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHH
Q 010577 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359 (507)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A 359 (507)
.+.. ....+|||.+||..+|..||+++|++||.|..-+|+.|. +|.+||.+||.|+..++|
T Consensus 121 Ss~~------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 121 SSDS------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred Chhh------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 5543 234579999999999999999999999999999999998 899999999999999999
Q ss_pred HHHHHHhCCceecC--cceeeehhhch
Q 010577 360 SRALLEMNGKMVVS--KPLYVALAQRK 384 (507)
Q Consensus 360 ~~a~~~~~~~~~~g--~~i~v~~~~~~ 384 (507)
+.||..|||..--| .+|.|+|+...
T Consensus 183 e~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 183 EEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred HHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 99999999988765 68999999755
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=1.3e-24 Score=217.55 Aligned_cols=176 Identities=31% Similarity=0.508 Sum_probs=150.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccc
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~ 279 (507)
...+|||+|||..+++++|+++|++||.|..+.++.+. ++.++|||||+|.+.++|.+|+ .+++..+.++.+.+....
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeecc
Confidence 45689999999999999999999999999999999876 5889999999999999999999 599999999999987654
Q ss_pred cchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHH
Q 010577 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~ 358 (507)
........... .........++|||+||+..+|+++|+++|+.||.|.+|.+..+. +|+++|||||+|.+.++
T Consensus 167 ~~~~~~~~~~~------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 167 AEKNRAAKAAT------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred hhhhhhhhccc------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 32221111000 000111235789999999999999999999999999999999987 67899999999999999
Q ss_pred HHHHHHHhCCceecCcceeeehhhc
Q 010577 359 ASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 359 A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
|.+|++.|||..+.|+.|.|.|+..
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999999863
No 37
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=1.4e-23 Score=167.30 Aligned_cols=173 Identities=35% Similarity=0.638 Sum_probs=152.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
......||||+||+..++++-|.++|-..|+|.++.+.+|+.+...+||||++|.++|+|.=|++-||..++.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeE-EEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCc
Q 010577 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (507)
Q Consensus 99 ~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~-v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~ 176 (507)
.+.....+- .-...+||+||.+++++.-|.++|+.||.+.. -++..+. +|..++++|+-|++.|.+.+|+..+++..
T Consensus 85 kas~~~~nl-~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 85 KASAHQKNL-DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ecccccccc-cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 877332222 22378999999999999999999999998865 2455554 58899999999999999999999999999
Q ss_pred cCCceeEEeeeccccc
Q 010577 177 LNDKQVYVGHFLRKQE 192 (507)
Q Consensus 177 ~~~~~i~v~~~~~~~~ 192 (507)
+.++.+.+..+..+..
T Consensus 164 l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDT 179 (203)
T ss_pred hcCCceEEEEEEecCC
Confidence 9999999988776544
No 38
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.90 E-value=5.5e-21 Score=169.09 Aligned_cols=342 Identities=18% Similarity=0.180 Sum_probs=253.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc--CCCCCCCcc
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML--NFTPLNGKP 94 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~g~~ 94 (507)
......+-.|+|++|-..+.|.||.+.++.||+|.-+.++..++ .|.|+|++.+.|+.|+... +...+.|..
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccCch
Confidence 34456778899999999999999999999999998888766543 6999999999999999864 345567776
Q ss_pred eEeecccCCcccccC----CCCc---EEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHH
Q 010577 95 IRVMYSHRDPSLRKS----GAGN---IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQK 167 (507)
Q Consensus 95 ~~v~~~~~~~~~~~~----~~~~---v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~ 167 (507)
.-+.++..+...+.. ...+ +.|-|--+.+|.+-|+.++...|.|.+|.|++. +.-.|.|+|.+.+.|++
T Consensus 99 Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 99 ALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVAQR 174 (494)
T ss_pred hhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHHHHH
Confidence 666666444332221 1122 335666788999999999999999999999886 44579999999999999
Q ss_pred HHHHhcCCccCCc--eeEEeeecccccc-------------------------------hhh------------------
Q 010577 168 AIEKLNGMLLNDK--QVYVGHFLRKQER-------------------------------DTE------------------ 196 (507)
Q Consensus 168 A~~~l~~~~~~~~--~i~v~~~~~~~~~-------------------------------~~~------------------ 196 (507)
|.+.|+|..|-.. .++++++...... ...
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred HHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 9999999877443 3444433221000 000
Q ss_pred ---------------------------hccCccceEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEEECCCCCccceEEE
Q 010577 197 ---------------------------INKSKFTNVYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248 (507)
Q Consensus 197 ---------------------------~~~~~~~~l~v~~lp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv 248 (507)
........+.|.+|... ++-+.|.++|..||.|.+|..++.+.+ .|.|
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g----tamV 330 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG----TAMV 330 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc----eeEE
Confidence 00112234777888754 677889999999999999999988765 6999
Q ss_pred EeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHH---------------HH--hH--HHHHhhHHhhhccCCcceE
Q 010577 249 NFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSEREL---------------EL--KH--QFEQNMKEAADKFQGANLY 309 (507)
Q Consensus 249 ~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~---------------~~--~~--~~~~~~~~~~~~~~~~~l~ 309 (507)
++.+..+.++|+..|++..+.|..+.+..+........ .. .. ..........-..++++|.
T Consensus 331 emgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLH 410 (494)
T KOG1456|consen 331 EMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLH 410 (494)
T ss_pred EcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeE
Confidence 99999999999999999999999988877653221110 00 00 0111111222345678899
Q ss_pred EecCCCCCCHHHHHhcccCCC-CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecC
Q 010577 310 IKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (507)
Q Consensus 310 v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g 373 (507)
.-|.|..+||+.|.++|...+ ...+|+++..++-++ .-+++||++.++|..|+..+|...+.+
T Consensus 411 ffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserS-ssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 411 FFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERS-SSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred EecCCCccCHHHHHHHhhhcCCCcceEEeeccccccc-ccceeeeehHHHHHHHHHHhccccccC
Confidence 999999999999999997765 357888888775443 368999999999999999999988875
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.90 E-value=1.5e-23 Score=179.35 Aligned_cols=152 Identities=26% Similarity=0.508 Sum_probs=140.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 103 (507)
.+|||+|||.++++.+|+.+|.+||+|++|.|+++ |+||-.+++..|..||..|++-.+.|..|+|+-+++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999986 8999999999999999999999999999999988765
Q ss_pred cccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeE
Q 010577 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVY 183 (507)
Q Consensus 104 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~ 183 (507)
...+.+++|+||...++.++|+..|++||+|.+|+|+++ |+||.|...++|..|++.|++..+.|+.+.
T Consensus 75 ----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 75 ----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred ----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccceee
Confidence 445789999999999999999999999999999999876 999999999999999999999999999999
Q ss_pred Eeeecccccch
Q 010577 184 VGHFLRKQERD 194 (507)
Q Consensus 184 v~~~~~~~~~~ 194 (507)
|...+++....
T Consensus 144 vq~stsrlrta 154 (346)
T KOG0109|consen 144 VQLSTSRLRTA 154 (346)
T ss_pred eeeeccccccC
Confidence 98776654433
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=1.3e-23 Score=179.74 Aligned_cols=147 Identities=24% Similarity=0.516 Sum_probs=137.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchH
Q 010577 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283 (507)
Q Consensus 204 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~ 283 (507)
.|||+|||.++++.+|+.+|++||+|.++.|+++ |+||..++...+..|+..|++..+.+..|.|+-++.++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs- 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS- 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC-
Confidence 5899999999999999999999999999999965 99999999999999999999999999999998876652
Q ss_pred HHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHH
Q 010577 284 RELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363 (507)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~ 363 (507)
..+++|+|+||...++.+||+..|++||.|.+|+|++| ++||.|+-.++|..|+
T Consensus 76 -------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 76 -------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAI 129 (346)
T ss_pred -------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHH
Confidence 24568999999999999999999999999999999988 9999999999999999
Q ss_pred HHhCCceecCcceeeehhhch
Q 010577 364 LEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 364 ~~~~~~~~~g~~i~v~~~~~~ 384 (507)
+.|+|..|.|++++|.++.++
T Consensus 130 r~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 130 RGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred hcccccccccceeeeeeeccc
Confidence 999999999999999998654
No 41
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.89 E-value=1.6e-20 Score=173.06 Aligned_cols=266 Identities=19% Similarity=0.234 Sum_probs=197.1
Q ss_pred CCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecc
Q 010577 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189 (507)
Q Consensus 110 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~ 189 (507)
....|.+++|||++|++||.++|+.+ .|.++.+. ..+|+..|-|||+|++.|++.+|++ .+...+..|.|.|-.+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~-r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIP-RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEe-ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 34568899999999999999999998 56664333 3469999999999999999999998 678888999999865533
Q ss_pred cccchh-----hhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEE-EEEEECCCCCccceEEEEeCCHHHHHHHHHHH
Q 010577 190 KQERDT-----EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263 (507)
Q Consensus 190 ~~~~~~-----~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 263 (507)
...... .........|.+++||+++++++|.++|+..-.|.. +.+..+..+++.|-|||+|.+.+.|++|+. -
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-r 164 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-R 164 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-H
Confidence 222111 111134567999999999999999999998866666 456666678899999999999999999994 5
Q ss_pred cCCCCCCceeeeeccccchHHHHHHhHH---------------------------HH---------------------Hh
Q 010577 264 NGKKFDDKEWYVGKAQKKSERELELKHQ---------------------------FE---------------------QN 295 (507)
Q Consensus 264 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------------------------~~---------------------~~ 295 (507)
+...+..+-|.|-.+............. .. ..
T Consensus 165 hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d 244 (510)
T KOG4211|consen 165 HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQD 244 (510)
T ss_pred HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccc
Confidence 6667777777776654433332220000 00 00
Q ss_pred ------------hHH-h-------------hh-ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcce
Q 010577 296 ------------MKE-A-------------AD-KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS 348 (507)
Q Consensus 296 ------------~~~-~-------------~~-~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~ 348 (507)
... . .. ...+..++.++||+..++.+|.++|+.. ....|+|...++|+..|.
T Consensus 245 ~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~ig~dGr~TGE 323 (510)
T KOG4211|consen 245 YGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIEIGPDGRATGE 323 (510)
T ss_pred cccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEEeCCCCccCCc
Confidence 000 0 00 0012458899999999999999999987 445899999999999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 349 afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
|+|+|.|.++|..|+ .-++..+..+.|.+...
T Consensus 324 AdveF~t~edav~Am-skd~anm~hrYVElFln 355 (510)
T KOG4211|consen 324 ADVEFATGEDAVGAM-GKDGANMGHRYVELFLN 355 (510)
T ss_pred ceeecccchhhHhhh-ccCCcccCcceeeeccc
Confidence 999999999999998 55666777776665443
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.89 E-value=3e-23 Score=165.44 Aligned_cols=170 Identities=33% Similarity=0.548 Sum_probs=149.3
Q ss_pred cCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeec
Q 010577 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (507)
Q Consensus 199 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~ 277 (507)
.....+|||+||+..++++.|.++|-+.|.|.++++.++. +...+||||++|.++++|+-|++.++...+.|++|++..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 3445789999999999999999999999999999999987 467899999999999999999999999999999999988
Q ss_pred cccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeE-EEEeeCC-CCCCcceEEEEeCC
Q 010577 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITS-CKVMRDP-SGISRGSGFVAFST 355 (507)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~-~g~~~g~afv~f~~ 355 (507)
+..... ....+.+|||+||...+++..|.+.|+.||.+.. =.++++. +|.++||+||.|++
T Consensus 86 as~~~~-----------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 86 ASAHQK-----------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred cccccc-----------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 862111 1112347999999999999999999999998776 3777777 68999999999999
Q ss_pred HHHHHHHHHHhCCceecCcceeeehhhchH
Q 010577 356 PEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (507)
Q Consensus 356 ~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~ 385 (507)
.+.+.+|+..+||..++.+.++|+++..+.
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEecC
Confidence 999999999999999999999999986443
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.8e-22 Score=168.53 Aligned_cols=186 Identities=32% Similarity=0.514 Sum_probs=154.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCC-C--Cceeeeec
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKF-D--DKEWYVGK 277 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~--~~~~~v~~ 277 (507)
..++|||+-|.+.-+|+|++.+|..||.++++.+.+..+|.++||+||.|.+..+|..|++.|++... . ...+.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999998653 2 34667777
Q ss_pred cccchHHHHHHhHHHHHhh-------------------------------------------------------------
Q 010577 278 AQKKSERELELKHQFEQNM------------------------------------------------------------- 296 (507)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 296 (507)
+..+.++....-.......
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 6654443321110000000
Q ss_pred --------------------------------------------------------------------------------
Q 010577 297 -------------------------------------------------------------------------------- 296 (507)
Q Consensus 297 -------------------------------------------------------------------------------- 296 (507)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred -------------------HHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCH
Q 010577 297 -------------------KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTP 356 (507)
Q Consensus 297 -------------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~ 356 (507)
....+..++|+|||-.||.+..+.||..+|-.||.|.+.+++.|. ++.+++|+||.|++.
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000223457899999999999999999999999999999999998 899999999999999
Q ss_pred HHHHHHHHHhCCceecCcceeeehhhchHH
Q 010577 357 EEASRALLEMNGKMVVSKPLYVALAQRKED 386 (507)
Q Consensus 357 ~~A~~a~~~~~~~~~~g~~i~v~~~~~~~~ 386 (507)
.+|..||..+||+.|+=|+|+|.+++++..
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999999999999999987754
No 44
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.87 E-value=1.1e-21 Score=176.92 Aligned_cols=247 Identities=21% Similarity=0.245 Sum_probs=205.1
Q ss_pred CCcEEEcCCCcccChHHHHhhhh-ccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecc
Q 010577 111 AGNIFIKNLDKAIDHKALHDTFS-AFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189 (507)
Q Consensus 111 ~~~v~v~nLp~~~t~~~l~~~f~-~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~ 189 (507)
.+.+||+|||+++.|++|+++|+ +-|+|+.|.++.+.+|+.+|+|.|+|+++|.+++|++.|+...+.||.|.|.-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 35699999999999999999994 56899999999999999999999999999999999999999999999999965544
Q ss_pred cccchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCC
Q 010577 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269 (507)
Q Consensus 190 ~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 269 (507)
.+..........-.+.|++++....-...+...|.--|.+.+..+.++.+..+++..+++|+..-.+..++..+......
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 33333332233345688999988888888888888888888888888989999999999999887777777655554444
Q ss_pred CceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceE
Q 010577 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSG 349 (507)
Q Consensus 270 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~a 349 (507)
.+.+.+ +.. +....+||.||.+.+..+.|.+.|.--|.|+.|.+-.|+.|.++|+|
T Consensus 204 lr~~h~-f~p-----------------------Pl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~ 259 (608)
T KOG4212|consen 204 LRSLHI-FSP-----------------------PLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFA 259 (608)
T ss_pred hhhccC-CCC-----------------------CccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCee
Confidence 444443 111 12336999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 350 FVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 350 fv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
.++|++.-+|..||..+++.-+..++..+.+.
T Consensus 260 vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 260 VIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred EEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 99999999999999999987766677666653
No 45
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=160.77 Aligned_cols=273 Identities=15% Similarity=0.172 Sum_probs=196.3
Q ss_pred cEEEcCCCcccChHHHHhhhhccCceeE-EEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecccc
Q 010577 113 NIFIKNLDKAIDHKALHDTFSAFGNILS-CKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191 (507)
Q Consensus 113 ~v~v~nLp~~~t~~~l~~~f~~~G~v~~-v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~ 191 (507)
.+..++|||..++.+|..+|........ +-+.....|+..|++.|.|.+.|....|++. |...+.++.+.+=.+....
T Consensus 62 vvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ge~ 140 (508)
T KOG1365|consen 62 VVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATGEE 140 (508)
T ss_pred EEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCchh
Confidence 4678999999999999999987643322 2344445688899999999999999999985 6677788888774433321
Q ss_pred cc----------hhhhccCccceEEEcCCCCCCCHHHHHHHhccc----CCeEEEEEEECCCCCccceEEEEeCCHHHHH
Q 010577 192 ER----------DTEINKSKFTNVYVKNLSESTTEEDLQKSFGEY----GTITSAVVMRDGDGKSKCFGFVNFENSDDAA 257 (507)
Q Consensus 192 ~~----------~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~ 257 (507)
.- ..-..+...-.+.+++||+++++.++.++|... |.++.+..+...+|+.+|.|||.|..+++|.
T Consensus 141 f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq 220 (508)
T KOG1365|consen 141 FLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQ 220 (508)
T ss_pred heEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHH
Confidence 11 111122334457889999999999999999632 3456777777789999999999999999999
Q ss_pred HHHHHHcCCCCCCceeeeeccccchHHHHHHhHHHHHh-------------hHHhhhccCCcceEEecCCCCCCHHHHHh
Q 010577 258 RAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQN-------------MKEAADKFQGANLYIKNLDDSIDDEKLKQ 324 (507)
Q Consensus 258 ~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~ 324 (507)
.|+. -|...++.|.|.+-++....-.........+.- ....-......+|.+++||++.+.++|.+
T Consensus 221 ~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~ 299 (508)
T KOG1365|consen 221 FALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILD 299 (508)
T ss_pred HHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHH
Confidence 9995 344455555555544432222111111100000 00000011256899999999999999999
Q ss_pred cccCCC-CeeE--EEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhchHHH
Q 010577 325 LFSPFG-SITS--CKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDR 387 (507)
Q Consensus 325 ~f~~~g-~v~~--~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~~~ 387 (507)
+|..|. .|+. |++..+..|++.|.|||+|.+.++|..|...-|++...++.|+|--+...+..
T Consensus 300 FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln 365 (508)
T KOG1365|consen 300 FLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELN 365 (508)
T ss_pred HHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHH
Confidence 999886 3444 89999999999999999999999999999888888888999999877655544
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.82 E-value=3.1e-18 Score=153.75 Aligned_cols=251 Identities=19% Similarity=0.258 Sum_probs=194.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc--ceE
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK--PIR 96 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~--~~~ 96 (507)
.+..--+++|.|+-+.++.+-|.++|++||.|..|..+.+.. +- .|.|+|.+.+.|..|...|++..|.+- .++
T Consensus 146 ~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn-~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLr 221 (492)
T KOG1190|consen 146 GPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN-GF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLR 221 (492)
T ss_pred CCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc-ch---hhhhhccchhhHHHHHHhccCCcccCceeEEE
Confidence 333445778999999999999999999999999998887643 32 699999999999999999998776443 567
Q ss_pred eecccCCc----------------ccccC-------------------------------------------C--CCcEE
Q 010577 97 VMYSHRDP----------------SLRKS-------------------------------------------G--AGNIF 115 (507)
Q Consensus 97 v~~~~~~~----------------~~~~~-------------------------------------------~--~~~v~ 115 (507)
|.+++-.. ..... . ...|.
T Consensus 222 Id~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vll 301 (492)
T KOG1190|consen 222 IDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLL 301 (492)
T ss_pred eehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEE
Confidence 76654110 00000 0 13466
Q ss_pred EcCC-CcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecccccc-
Q 010577 116 IKNL-DKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQER- 193 (507)
Q Consensus 116 v~nL-p~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~~~- 193 (507)
|.|| +..+|.+.|..+|.-||+|.+|+|+.+ .+-.|+|+|++...|+.|++.|+|..+.|+.|++..+....-.
T Consensus 302 vsnln~~~VT~d~LftlFgvYGdVqRVkil~n----kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 302 VSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN----KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred EecCchhccchhHHHHHHhhhcceEEEEeeec----CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 7777 566899999999999999999999987 3456999999999999999999999999999999765432110
Q ss_pred ------hhh------------h----------ccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccce
Q 010577 194 ------DTE------------I----------NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCF 245 (507)
Q Consensus 194 ------~~~------------~----------~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~ 245 (507)
+.. . --..+.++.++++|.+++++++++.|..-|-..+...... +.+.+
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~km 454 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKM 454 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcce
Confidence 000 0 1134557899999999999999999999987766655544 34558
Q ss_pred EEEEeCCHHHHHHHHHHHcCCCCCCc-eeeeecccc
Q 010577 246 GFVNFENSDDAARAVEALNGKKFDDK-EWYVGKAQK 280 (507)
Q Consensus 246 afv~f~~~~~a~~a~~~l~~~~~~~~-~~~v~~~~~ 280 (507)
+++.+.+.|.|..|+-.++.+.++.. .++|.++++
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999998888765 778877653
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=8.4e-19 Score=158.92 Aligned_cols=174 Identities=26% Similarity=0.435 Sum_probs=148.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccc
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~ 279 (507)
....+||++|+|+++++.|+++|.+||+|.++.++++. +++++||+||+|.+.+....++ ....+.++++.+.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 45679999999999999999999999999999999987 5899999999999988888777 456677889999888877
Q ss_pred cchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHH
Q 010577 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~ 358 (507)
+........... ...+|||++|+.++++++++++|++||.|..+.+..|. +.+++||+||.|.+.++
T Consensus 84 ~r~~~~~~~~~~------------~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 84 SREDQTKVGRHL------------RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDS 151 (311)
T ss_pred Cccccccccccc------------ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccc
Confidence 655433222111 34479999999999999999999999999999888887 78899999999999887
Q ss_pred HHHHHHHhCCceecCcceeeehhhchHHHH
Q 010577 359 ASRALLEMNGKMVVSKPLYVALAQRKEDRR 388 (507)
Q Consensus 359 A~~a~~~~~~~~~~g~~i~v~~~~~~~~~~ 388 (507)
+.+++ ...-+.|+++.|.|.-|.+++...
T Consensus 152 Vdkv~-~~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 152 VDKVT-LQKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cceec-ccceeeecCceeeEeeccchhhcc
Confidence 77776 677789999999999998876644
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.1e-18 Score=137.94 Aligned_cols=150 Identities=19% Similarity=0.368 Sum_probs=127.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
..+.+++|||+|||.++.+.||.++|.+||.|.+|.+..- ...-+||||+|++..+|..||.--++..++|-+|+|+
T Consensus 2 ~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 2 SGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred CCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 4578899999999999999999999999999999988543 3345699999999999999999999999999999999
Q ss_pred cccCCcccc------------------------cCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeE
Q 010577 99 YSHRDPSLR------------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGY 154 (507)
Q Consensus 99 ~~~~~~~~~------------------------~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~ 154 (507)
+...-.... ......|.|++||.+.+|++|+++....|.|....+.++ +.
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~ 152 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GV 152 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cc
Confidence 976432110 112346999999999999999999999999988888775 47
Q ss_pred EEEEECCHHHHHHHHHHhcCCcc
Q 010577 155 GFVQFDNEESAQKAIEKLNGMLL 177 (507)
Q Consensus 155 a~v~f~~~e~A~~A~~~l~~~~~ 177 (507)
+.|+|...|+-+-|+..|....+
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeeehhhHHHHHHhhccccc
Confidence 88999999999999998866544
No 49
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.78 E-value=6.7e-19 Score=159.58 Aligned_cols=168 Identities=28% Similarity=0.477 Sum_probs=149.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
+..+|+|++|+|+++++.|++.|+.||.|.++.+++|..+++++||+||+|++.+...+++.. ....++|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 789999999999999999999999999999999999999999999999999999999999885 5667899999988776
Q ss_pred CCcccccCC----CCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCc
Q 010577 102 RDPSLRKSG----AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (507)
Q Consensus 102 ~~~~~~~~~----~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~ 176 (507)
......... ..+|||++||..++++++++.|+.||.|..+.++.+. ..++++|+||.|.+.++...++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 554443333 5589999999999999999999999999999999885 58999999999999999999887 57788
Q ss_pred cCCceeEEeeecccc
Q 010577 177 LNDKQVYVGHFLRKQ 191 (507)
Q Consensus 177 ~~~~~i~v~~~~~~~ 191 (507)
+.++.+.|..+..+.
T Consensus 163 ~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKE 177 (311)
T ss_pred ecCceeeEeeccchh
Confidence 999999997776543
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.77 E-value=1.2e-17 Score=139.65 Aligned_cols=158 Identities=23% Similarity=0.474 Sum_probs=135.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHH----HHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 21 FGTTSLYVGDLEANVTDSQLYD----LFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~----~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
..+.||||+||+..+..++|++ +|+.||.|.+|...+ +.+.+|.|||.|++.+.|..|+..|++..|.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3444999999999999999988 999999999998875 678899999999999999999999999999999999
Q ss_pred eecccCCcccc------------------------------------------------cCCCCcEEEcCCCcccChHHH
Q 010577 97 VMYSHRDPSLR------------------------------------------------KSGAGNIFIKNLDKAIDHKAL 128 (507)
Q Consensus 97 v~~~~~~~~~~------------------------------------------------~~~~~~v~v~nLp~~~t~~~l 128 (507)
|.+++.+.... ......+|+.|||.+++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 99987542111 112346899999999999999
Q ss_pred HhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccC-CceeEEe
Q 010577 129 HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVG 185 (507)
Q Consensus 129 ~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~-~~~i~v~ 185 (507)
..+|..|.-...+.++.. ..+.|||+|.+...|..|...+++..+. ...+.+.
T Consensus 164 ~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred HHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 999999999999988876 5778999999999999999999888765 4455543
No 51
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=7.3e-18 Score=160.25 Aligned_cols=259 Identities=22% Similarity=0.407 Sum_probs=200.6
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcC-----------C-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHH
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQM-----------G-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARA 81 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~-----------G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A 81 (507)
.......+.++.++|+++|..++++....+|..- | .|..+.+...+ ++|||+|.+.++|..|
T Consensus 166 ~~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~ 239 (500)
T KOG0120|consen 166 PMDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEA 239 (500)
T ss_pred ccCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhh
Confidence 4456678899999999999999999999998753 3 46777775543 4999999999999999
Q ss_pred HHHcCCCCCCCcceEeecccCCcc---------------------cccCCCCcEEEcCCCcccChHHHHhhhhccCceeE
Q 010577 82 LEMLNFTPLNGKPIRVMYSHRDPS---------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS 140 (507)
Q Consensus 82 ~~~l~~~~~~g~~~~v~~~~~~~~---------------------~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~ 140 (507)
+. +++..|.|..+++........ .......+++|++||..+++..+.++...||.+..
T Consensus 240 ~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~ 318 (500)
T KOG0120|consen 240 MA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKA 318 (500)
T ss_pred hc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchh
Confidence 99 689999999988865432210 01123457999999999999999999999999999
Q ss_pred EEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecccccchhhhcc------------------Cc
Q 010577 141 CKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINK------------------SK 201 (507)
Q Consensus 141 v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~------------------~~ 201 (507)
..++.+. +|.++||||++|.+......|+..|+|..++++.+.+..+............ ..
T Consensus 319 f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~ 398 (500)
T KOG0120|consen 319 FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIP 398 (500)
T ss_pred heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCc
Confidence 9999995 4899999999999999999999999999999999999766543332221111 11
Q ss_pred cceEEEcCCC--CC-CCH-------HHHHHHhcccCCeEEEEEEEC-CC---CCccceEEEEeCCHHHHHHHHHHHcCCC
Q 010577 202 FTNVYVKNLS--ES-TTE-------EDLQKSFGEYGTITSAVVMRD-GD---GKSKCFGFVNFENSDDAARAVEALNGKK 267 (507)
Q Consensus 202 ~~~l~v~~lp--~~-~t~-------~~l~~~f~~~G~v~~~~~~~~-~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~ 267 (507)
+..|++.|+- .+ ..+ ++++.-+.+||.|..|.+.+. .+ ....|..||+|.+.+++++|++.|+|..
T Consensus 399 t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK 478 (500)
T KOG0120|consen 399 TEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK 478 (500)
T ss_pred chhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCce
Confidence 1222333321 01 111 446667889999999998887 32 3456788999999999999999999999
Q ss_pred CCCceeeeeccc
Q 010577 268 FDDKEWYVGKAQ 279 (507)
Q Consensus 268 ~~~~~~~v~~~~ 279 (507)
|.++.+...+..
T Consensus 479 F~nRtVvtsYyd 490 (500)
T KOG0120|consen 479 FANRTVVASYYD 490 (500)
T ss_pred eCCcEEEEEecC
Confidence 999999887764
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.75 E-value=2e-18 Score=161.50 Aligned_cols=176 Identities=24% Similarity=0.431 Sum_probs=145.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeecccc
Q 010577 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (507)
Q Consensus 202 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~ 280 (507)
.+++|+..+....++-+|.++|+..|.|..+.++.+. .++++|.+||+|.+.+....|+ .|.|..+.|..+.|.....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 4567888888888999999999999999999999887 4789999999999999999998 7999999999998876543
Q ss_pred chHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHH
Q 010577 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359 (507)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A 359 (507)
........ ........-..+...|||+||..++++++|+.+|+.||.|+.|.+..|. +|+++||+||+|.+.++|
T Consensus 258 eknr~a~~----s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 258 EKNRAANA----SPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHhc----cccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 22221110 0000000011122239999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHhCCceecCcceeeehhh
Q 010577 360 SRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 360 ~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
.+|++.|||..+.|+.|+|....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred HHHHHHhccceecCceEEEEEee
Confidence 99999999999999999998764
No 53
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=1.7e-17 Score=140.60 Aligned_cols=189 Identities=30% Similarity=0.481 Sum_probs=150.0
Q ss_pred CcceEeecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHH
Q 010577 92 GKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171 (507)
Q Consensus 92 g~~~~v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~ 171 (507)
+|.+.|..+..+ .+....++|||+-|.+.-+|+|++.+|..||.|.+|.+....+|.++|+|||+|.+..+|+.|+..
T Consensus 2 nrpiqvkpadse--srg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a 79 (371)
T KOG0146|consen 2 NRPIQVKPADSE--SRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA 79 (371)
T ss_pred CCCccccccccc--cCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHH
Confidence 355556544332 233467899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcc-C--CceeEEeeecccccchhh----------------------------------------------------
Q 010577 172 LNGMLL-N--DKQVYVGHFLRKQERDTE---------------------------------------------------- 196 (507)
Q Consensus 172 l~~~~~-~--~~~i~v~~~~~~~~~~~~---------------------------------------------------- 196 (507)
||+..- . ...+.|.++....++...
T Consensus 80 LHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~ 159 (371)
T KOG0146|consen 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFA 159 (371)
T ss_pred hcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhH
Confidence 988532 2 233444433222211100
Q ss_pred --------------------------------------------------------------------------------
Q 010577 197 -------------------------------------------------------------------------------- 196 (507)
Q Consensus 197 -------------------------------------------------------------------------------- 196 (507)
T Consensus 160 ~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~v 239 (371)
T KOG0146|consen 160 AAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTV 239 (371)
T ss_pred HHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccc
Confidence
Q ss_pred ----------------------------------------hccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEE
Q 010577 197 ----------------------------------------INKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR 236 (507)
Q Consensus 197 ----------------------------------------~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~ 236 (507)
.+....++|||..||.+..+.||...|-.||.|.+.++.-
T Consensus 240 a~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFv 319 (371)
T KOG0146|consen 240 ADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFV 319 (371)
T ss_pred cchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeee
Confidence 0112335699999999999999999999999999988877
Q ss_pred CC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccch
Q 010577 237 DG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (507)
Q Consensus 237 ~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~ 282 (507)
|+ +..++.|+||.|++..++..|+..+||..|+-++++|....++.
T Consensus 320 DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 320 DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 76 67899999999999999999999999999999998887665443
No 54
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.73 E-value=7.1e-17 Score=143.76 Aligned_cols=259 Identities=18% Similarity=0.178 Sum_probs=191.2
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
-+.....+..|+.++|||..++.+|..||.................|+..|.+.|.|.+.|.-..|+++ ++....++.+
T Consensus 53 ~~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryi 131 (508)
T KOG1365|consen 53 KNHSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYI 131 (508)
T ss_pred hccccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCce
Confidence 455566778899999999999999999998763222222222224566778999999999999999997 6666777888
Q ss_pred EeecccCCccc--------------ccCCCCcEEEcCCCcccChHHHHhhhhcc----CceeEEEEeeCCCCCceeEEEE
Q 010577 96 RVMYSHRDPSL--------------RKSGAGNIFIKNLDKAIDHKALHDTFSAF----GNILSCKVATDLNGQSKGYGFV 157 (507)
Q Consensus 96 ~v~~~~~~~~~--------------~~~~~~~v~v~nLp~~~t~~~l~~~f~~~----G~v~~v~~~~~~~~~~~g~a~v 157 (507)
.|..+..++.. .++..-.|.+++||.++++.++.++|..- |..+.|-+++..+|+..|-|||
T Consensus 132 evYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFv 211 (508)
T KOG1365|consen 132 EVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFV 211 (508)
T ss_pred eeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEE
Confidence 88766544322 12233468899999999999999999632 3556788888889999999999
Q ss_pred EECCHHHHHHHHHHhcCCccCCceeEEeeeccccc------------------------chhh-hccCccceEEEcCCCC
Q 010577 158 QFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE------------------------RDTE-INKSKFTNVYVKNLSE 212 (507)
Q Consensus 158 ~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~~------------------------~~~~-~~~~~~~~l~v~~lp~ 212 (507)
.|+++++|+.|+.. |...++.|.|.+-.++...- .... -......+|.+++||.
T Consensus 212 lfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy 290 (508)
T KOG1365|consen 212 LFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPY 290 (508)
T ss_pred EecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCCh
Confidence 99999999999985 44445555554422211000 0000 0111256799999999
Q ss_pred CCCHHHHHHHhcccCC-eEE--EEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeee
Q 010577 213 STTEEDLQKSFGEYGT-ITS--AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276 (507)
Q Consensus 213 ~~t~~~l~~~f~~~G~-v~~--~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~ 276 (507)
+.+.++|.++|..|.. |.. +++..+..|+..|.|||+|.+.++|..|..+.+++....|.|.+.
T Consensus 291 ~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 291 EATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred hhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 9999999999998865 333 788888899999999999999999999998887776656666553
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=7.3e-17 Score=132.08 Aligned_cols=89 Identities=33% Similarity=0.507 Sum_probs=82.0
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
........+++|||+|||++++|++|+++|++||.|.+|.++.+..+++++|||||+|.+.++|++|++.||+..+.|++
T Consensus 26 ~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~ 105 (144)
T PLN03134 26 MLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105 (144)
T ss_pred ccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 33344667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeecccCC
Q 010577 95 IRVMYSHRD 103 (507)
Q Consensus 95 ~~v~~~~~~ 103 (507)
|+|.++...
T Consensus 106 l~V~~a~~~ 114 (144)
T PLN03134 106 IRVNPANDR 114 (144)
T ss_pred EEEEeCCcC
Confidence 999988654
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=4.2e-17 Score=133.49 Aligned_cols=80 Identities=35% Similarity=0.561 Sum_probs=76.0
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
.+++|||+||++++|+++|+++|++||.|.+|++..+. +++++|||||+|++.++|++|++.||+..|+|+.|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 45689999999999999999999999999999999987 88999999999999999999999999999999999999986
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
.
T Consensus 113 ~ 113 (144)
T PLN03134 113 D 113 (144)
T ss_pred c
Confidence 4
No 57
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.69 E-value=2.9e-16 Score=131.42 Aligned_cols=175 Identities=22% Similarity=0.370 Sum_probs=143.1
Q ss_pred cceEEEcCCCCCCCHHHHHH----HhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeec
Q 010577 202 FTNVYVKNLSESTTEEDLQK----SFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (507)
Q Consensus 202 ~~~l~v~~lp~~~t~~~l~~----~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~ 277 (507)
+.+|+|.||...+..++|+. +|++||.|..|..... .+.||.|||.|.+.+.|..|+..|+|..+.|+.+++.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 34899999999999999888 9999999988877643 46789999999999999999999999999999999999
Q ss_pred cccchHHHHHHhHHHHHh----------------hH----------------HhhhccCCcceEEecCCCCCCHHHHHhc
Q 010577 278 AQKKSERELELKHQFEQN----------------MK----------------EAADKFQGANLYIKNLDDSIDDEKLKQL 325 (507)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~----------------~~----------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~ 325 (507)
+..++............. .. ......+...+++.|||.+++.+.+..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 887665443311100000 00 0111345667999999999999999999
Q ss_pred ccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceec-Ccceeeehhh
Q 010577 326 FSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQ 382 (507)
Q Consensus 326 f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~-g~~i~v~~~~ 382 (507)
|+.|....+|+++... .+.|||+|.+...|..|...+.|..+- ...+.|.+++
T Consensus 167 f~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999998873 468999999999999999999998886 7888888764
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=5.6e-16 Score=128.02 Aligned_cols=155 Identities=20% Similarity=0.344 Sum_probs=118.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEE-EecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC---CCcceE
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRV-CRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL---NGKPIR 96 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~-~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~~~ 96 (507)
-.-|||||++||.++...||+.+|+.|-..+...+ ..++...-.+.+|||.|.+..+|..|+++|||..| .+..++
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34799999999999999999999999843344443 33333333557999999999999999999999988 456788
Q ss_pred eecccCCccccc--------------------------------------------------------------------
Q 010577 97 VMYSHRDPSLRK-------------------------------------------------------------------- 108 (507)
Q Consensus 97 v~~~~~~~~~~~-------------------------------------------------------------------- 108 (507)
|++++.+.+...
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 887663311110
Q ss_pred ----------------CCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHh
Q 010577 109 ----------------SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172 (507)
Q Consensus 109 ----------------~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l 172 (507)
..+.++||.||..++++++|+.+|++|......+|.. +.|. ..||++|++.+.|..|+..|
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g~--~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGGM--PVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCCc--ceEeecHHHHHHHHHHHHHh
Confidence 0135799999999999999999999997665544432 3333 37999999999999999999
Q ss_pred cCCccC
Q 010577 173 NGMLLN 178 (507)
Q Consensus 173 ~~~~~~ 178 (507)
+|..+.
T Consensus 269 qg~~~s 274 (284)
T KOG1457|consen 269 QGNLLS 274 (284)
T ss_pred hcceec
Confidence 987653
No 59
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=2.2e-16 Score=150.33 Aligned_cols=268 Identities=19% Similarity=0.354 Sum_probs=197.3
Q ss_pred CCcEEEcCCCcccChHHHHhhhhcc-----------C-ceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccC
Q 010577 111 AGNIFIKNLDKAIDHKALHDTFSAF-----------G-NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178 (507)
Q Consensus 111 ~~~v~v~nLp~~~t~~~l~~~f~~~-----------G-~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~ 178 (507)
...+.|++++..++++....+|..- | .+..+.+.. .+++|+++|.+.++|..|+. +.+..+.
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhhc-ccchhhC
Confidence 4568999999999999999888653 2 355555544 47799999999999999997 7788888
Q ss_pred CceeEEeeecccccchh-----------------hhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCC-C
Q 010577 179 DKQVYVGHFLRKQERDT-----------------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGD-G 240 (507)
Q Consensus 179 ~~~i~v~~~~~~~~~~~-----------------~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~ 240 (507)
|..+.+........... .........++|++||...++++++++.+.||.+....++.+.. +
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 88777643333222111 11112234589999999999999999999999999888887764 8
Q ss_pred CccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHHHH------HhhHHhhhccCCcceEEecCC
Q 010577 241 KSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFE------QNMKEAADKFQGANLYIKNLD 314 (507)
Q Consensus 241 ~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~v~~l~ 314 (507)
.++||+|.+|.+......|++.|+|..++++.+.+..+............... ..........+...|.+.|+=
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~V 408 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVV 408 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcC
Confidence 99999999999999999999999999999999988877654433222222000 000011222333445555432
Q ss_pred C--CC-CH-------HHHHhcccCCCCeeEEEEeeC-CC---CCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 315 D--SI-DD-------EKLKQLFSPFGSITSCKVMRD-PS---GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 315 ~--~~-~~-------~~l~~~f~~~g~v~~~~~~~~-~~---g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
. +. .+ |+++..|++||.|.+|.+.+. .. .-..|..||+|++.+++.+|+++|+|.+|.++.|..+|
T Consensus 409 t~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 409 TPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred CHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 1 11 11 566778889999999999887 32 33567899999999999999999999999999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
....
T Consensus 489 ydeD 492 (500)
T KOG0120|consen 489 YDED 492 (500)
T ss_pred cCHH
Confidence 7643
No 60
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.66 E-value=4.2e-15 Score=132.16 Aligned_cols=261 Identities=18% Similarity=0.271 Sum_probs=193.9
Q ss_pred CCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHh--cCCccCCceeEEee
Q 010577 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL--NGMLLNDKQVYVGH 186 (507)
Q Consensus 109 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l--~~~~~~~~~i~v~~ 186 (507)
..+-.|.|++|-..+++.+|.+.++.||.|..+..... +..|.|+|++.+.|.+++... +...+.|....+.+
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-----cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 34457889999999999999999999999988887764 568999999999999998754 34466777777777
Q ss_pred ecccccchhhhccCccc-eEE--EcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHH
Q 010577 187 FLRKQERDTEINKSKFT-NVY--VKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEAL 263 (507)
Q Consensus 187 ~~~~~~~~~~~~~~~~~-~l~--v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 263 (507)
++....++...+....+ .|. |-|--..+|.+-|..++...|.|.+|.+++. ++- .|.|+|++.+.|++|.+.|
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngV---QAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGV---QAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cce---eeEEeechhHHHHHHHhhc
Confidence 65555544443333222 233 3444567999999999999999999999876 332 5899999999999999999
Q ss_pred cCCCCCCc--eeeeeccccchH---------HHHHHh--------------H---------HHHHhh-------------
Q 010577 264 NGKKFDDK--EWYVGKAQKKSE---------RELELK--------------H---------QFEQNM------------- 296 (507)
Q Consensus 264 ~~~~~~~~--~~~v~~~~~~~~---------~~~~~~--------------~---------~~~~~~------------- 296 (507)
+|..|... .++|.++++... ...... + ..++..
T Consensus 180 NGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~ 259 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHG 259 (494)
T ss_pred ccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCC
Confidence 99887644 445555542110 000000 0 000000
Q ss_pred -------------H------HhhhccCCcceEEecCCC-CCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCH
Q 010577 297 -------------K------EAADKFQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP 356 (507)
Q Consensus 297 -------------~------~~~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~ 356 (507)
. ......+++.+.|-+|.. .++.+.|+.+|..||.|++|++++.+. |.|.|++.|.
T Consensus 260 p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~ 335 (494)
T KOG1456|consen 260 PPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDA 335 (494)
T ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcH
Confidence 0 001122456789999995 678899999999999999999999854 5799999999
Q ss_pred HHHHHHHHHhCCceecCcceeeehhh
Q 010577 357 EEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 357 ~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
.+.++|+..||+..+.|.+|.|.+++
T Consensus 336 ~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 336 YAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred HHHHHHHHHhccCccccceEEEeecc
Confidence 99999999999999999999998875
No 61
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.64 E-value=1.2e-14 Score=128.31 Aligned_cols=167 Identities=20% Similarity=0.331 Sum_probs=136.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCC
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~--------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 89 (507)
....-++.|||+|||.++|.+++.++|++||.|.. |++.++. .|..+|-|.+.|...++...|+..|++..
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccc
Confidence 34556788999999999999999999999997754 8899985 49999999999999999999999999999
Q ss_pred CCCcceEeecccCC------------------------------------cccccCCCCcEEEcCCC----cccC-----
Q 010577 90 LNGKPIRVMYSHRD------------------------------------PSLRKSGAGNIFIKNLD----KAID----- 124 (507)
Q Consensus 90 ~~g~~~~v~~~~~~------------------------------------~~~~~~~~~~v~v~nLp----~~~t----- 124 (507)
|+|+.++|+.++-. ...+....++|.+.|+= ...+
T Consensus 208 ~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 208 LRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred ccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 99999999876411 01112234678888872 1122
Q ss_pred --hHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeec
Q 010577 125 --HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188 (507)
Q Consensus 125 --~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~ 188 (507)
+++|.+-+++||.|.+|.+... .+.|.+.|.|.+.++|..|++.|+|..+.||.|......
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 4566778999999999988743 467789999999999999999999999999999986443
No 62
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.63 E-value=4.4e-15 Score=142.13 Aligned_cols=165 Identities=11% Similarity=0.042 Sum_probs=129.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
.....+.+++.+..+++.|++++|-.. .|..+.+.++...+...|-++|+|....++++|+.. |...+..|.+.+...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCC
Confidence 455667778999999999999999765 666777777665566688999999999999999996 666666666666432
Q ss_pred cCCc-------------------------------------ccccCCCCcEEEcCCCcccChHHHHhhhhccCceeE-EE
Q 010577 101 HRDP-------------------------------------SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILS-CK 142 (507)
Q Consensus 101 ~~~~-------------------------------------~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~-v~ 142 (507)
-+.. ........+|+|..||..+++.++.+.|...-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 2110 011223468999999999999999999999888887 66
Q ss_pred EeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeee
Q 010577 143 VATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHF 187 (507)
Q Consensus 143 ~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~ 187 (507)
|-...++..++.|||.|..++++..|...-+...++.+.|+|...
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 666678889999999999999999998877777888888888544
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=129.53 Aligned_cols=149 Identities=23% Similarity=0.452 Sum_probs=127.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 103 (507)
..|||++||+.+.+.+|.+||+.||.|..|.+.. +|+||+|.+..+|..|+..||+..|.|.++.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999999998854 38899999999999999999999999998888887631
Q ss_pred cc------------------cccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHH
Q 010577 104 PS------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESA 165 (507)
Q Consensus 104 ~~------------------~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A 165 (507)
.. ........++|.+++..+.+.+|.+.|..+|.+....+ ..++++|+|+..+++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 00 01123456889999999999999999999999854444 466899999999999
Q ss_pred HHHHHHhcCCccCCceeEEeee
Q 010577 166 QKAIEKLNGMLLNDKQVYVGHF 187 (507)
Q Consensus 166 ~~A~~~l~~~~~~~~~i~v~~~ 187 (507)
..|++.|++..+.++.|.+...
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhcchhccchhhcCceeeeccc
Confidence 9999999999999999999433
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=3.1e-15 Score=107.86 Aligned_cols=70 Identities=44% Similarity=0.764 Sum_probs=67.3
Q ss_pred eEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCccee
Q 010577 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (507)
Q Consensus 308 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~ 377 (507)
|||+|||.++|+++|+++|+.||.|..+.+..+..+..+++|||+|++.++|.+|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999999875
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=8.7e-15 Score=123.11 Aligned_cols=85 Identities=27% Similarity=0.431 Sum_probs=80.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
....+.+|.|.||+.+++|++|.++|.+||.|..|.+.+++.+|.++|||||.|.+.++|.+||+.||+.-++.--|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 010577 99 YSHRD 103 (507)
Q Consensus 99 ~~~~~ 103 (507)
|++..
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99864
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=6.3e-15 Score=106.24 Aligned_cols=70 Identities=44% Similarity=0.808 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 26 l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
|||+|||.++++++|+++|+.||.|..+.+..+ .++..+++|||+|.+.++|.+|++.|++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6789999999999999999999999999999998875
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4e-15 Score=125.13 Aligned_cols=81 Identities=32% Similarity=0.597 Sum_probs=77.6
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
+.++|.|.||+.++++++|+++|.+||.|.+|.|.+|+ +|.++|||||.|.+.++|.+||+.|||+-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56689999999999999999999999999999999998 99999999999999999999999999999999999999998
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 74
No 68
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.57 E-value=9.5e-14 Score=135.11 Aligned_cols=80 Identities=24% Similarity=0.457 Sum_probs=73.5
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++||||++|+..+++.||.++|+.||.|.+|.++.. +|||||.+.+.++|.+|+.+|++..+.++.|+|.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 34679999999999999999999999999999999875 8899999999999999999999999999999999997
Q ss_pred chHHH
Q 010577 383 RKEDR 387 (507)
Q Consensus 383 ~~~~~ 387 (507)
.+..+
T Consensus 494 g~G~k 498 (894)
T KOG0132|consen 494 GKGPK 498 (894)
T ss_pred cCCcc
Confidence 55433
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=1.9e-14 Score=103.49 Aligned_cols=70 Identities=40% Similarity=0.692 Sum_probs=65.1
Q ss_pred eEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCccee
Q 010577 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (507)
Q Consensus 308 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~ 377 (507)
|+|+|||+++++++|+++|+.||.|..+++..++++.++++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999998888999999999999999999999999999999874
No 70
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=3.7e-14 Score=113.80 Aligned_cols=164 Identities=20% Similarity=0.274 Sum_probs=127.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeecccc
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~ 280 (507)
.+..|+|+|||.++.+.+|.++|-+||.|..|.+.... ....||||+|++..+|+.|+..-++..+++..++|+++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 35679999999999999999999999999999886543 2345999999999999999999999999999999998764
Q ss_pred chHHHHHHhHHHH----Hh----hHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEE
Q 010577 281 KSERELELKHQFE----QN----MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVA 352 (507)
Q Consensus 281 ~~~~~~~~~~~~~----~~----~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~ 352 (507)
............. .. ..-.........|.|.+||...+++||+++..+-|.|....+.+| |.+.|+
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~ 156 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVE 156 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeee
Confidence 3210000000000 00 000000112236999999999999999999999999999999887 479999
Q ss_pred eCCHHHHHHHHHHhCCceec
Q 010577 353 FSTPEEASRALLEMNGKMVV 372 (507)
Q Consensus 353 f~~~~~A~~a~~~~~~~~~~ 372 (507)
|...|+.+-|+..|....+.
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeehhhHHHHHHhhcccccc
Confidence 99999999999999887765
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.55 E-value=3.7e-14 Score=117.37 Aligned_cols=171 Identities=20% Similarity=0.341 Sum_probs=123.2
Q ss_pred cCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC--CCCccceEEEEeCCHHHHHHHHHHHcCCCCC---Ccee
Q 010577 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG--DGKSKCFGFVNFENSDDAARAVEALNGKKFD---DKEW 273 (507)
Q Consensus 199 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~--~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---~~~~ 273 (507)
....++|||++||.++...||..+|..|.-.+...+.... +...+-++|++|.+..+|..|++.|+|..|+ +..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4456899999999999999999999998766665554433 2335579999999999999999999998886 4566
Q ss_pred eeeccccchHHHHHH--------------------h-HHHHHhh------------------------------------
Q 010577 274 YVGKAQKKSERELEL--------------------K-HQFEQNM------------------------------------ 296 (507)
Q Consensus 274 ~v~~~~~~~~~~~~~--------------------~-~~~~~~~------------------------------------ 296 (507)
++.++++........ . ....+..
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 666654332111000 0 0000000
Q ss_pred -----------HHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHH
Q 010577 297 -----------KEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLE 365 (507)
Q Consensus 297 -----------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~ 365 (507)
.-......+.+|||.||..++||++|+.+|+.|-....++|... .| ...||++|++.+.|..|+..
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHHHH
Confidence 00000112457999999999999999999999987777776433 33 34899999999999999999
Q ss_pred hCCceec
Q 010577 366 MNGKMVV 372 (507)
Q Consensus 366 ~~~~~~~ 372 (507)
|.|..+.
T Consensus 268 lqg~~~s 274 (284)
T KOG1457|consen 268 LQGNLLS 274 (284)
T ss_pred hhcceec
Confidence 9998773
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.1e-14 Score=109.54 Aligned_cols=84 Identities=25% Similarity=0.491 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
+-+.+++|||+||+..++|+.|.++|+++|.|..|.+=.|+.+..+.|||||+|-+.++|..|+..+++..++.+.|++.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 45789999999999999999999999999999999998898888999999999999999999999999999999999998
Q ss_pred cccC
Q 010577 99 YSHR 102 (507)
Q Consensus 99 ~~~~ 102 (507)
|..-
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 7653
No 73
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.55 E-value=8.7e-13 Score=126.69 Aligned_cols=168 Identities=14% Similarity=0.018 Sum_probs=124.0
Q ss_pred EEEcCCCcccChHHHHhhhhccCceeEEEEeeCCC-CCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeeccccc
Q 010577 114 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN-GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQE 192 (507)
Q Consensus 114 v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~~ 192 (507)
+.+.+.+.+.+..+++++|... .+....|..+.- +...|-++|+|....++++|++. +....-+|.+.+.+......
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccc
Confidence 5567777888899999998654 555666666643 33478899999999999999874 55555566666543332211
Q ss_pred chh---------------------------------hhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEE-EEEEECC
Q 010577 193 RDT---------------------------------EINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITS-AVVMRDG 238 (507)
Q Consensus 193 ~~~---------------------------------~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~-~~~~~~~ 238 (507)
... ........+|+|..||..+++..+.+.|...-.|++ |.+.+..
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC
Confidence 100 011234467999999999999999999998888877 7788888
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchH
Q 010577 239 DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283 (507)
Q Consensus 239 ~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~ 283 (507)
+++.++.|||.|...+++..|...-+.+.++.+.|+|........
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 889999999999999888888876677777888888876654443
No 74
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=7.6e-15 Score=123.11 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=70.9
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
++|||++|+|++..|+|+++|++||+|.+..++.|+ +|+|+||+||+|+|.++|.+|++.-| -.|+||+..|.+|.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 579999999999999999999999999999999998 99999999999999999999996544 688999999998864
No 75
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=5.4e-14 Score=101.53 Aligned_cols=87 Identities=21% Similarity=0.411 Sum_probs=77.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
.-..+..++.|||+|||.++|.++..++|-+||.|..|+|=. +...+|.|||.|++..+|.+|+++|++..+.++-+
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl 87 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYL 87 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceE
Confidence 345677889999999999999999999999999999999854 45677899999999999999999999999999999
Q ss_pred EeecccCCcc
Q 010577 96 RVMYSHRDPS 105 (507)
Q Consensus 96 ~v~~~~~~~~ 105 (507)
.|.+....+.
T Consensus 88 ~vlyyq~~~~ 97 (124)
T KOG0114|consen 88 VVLYYQPEDA 97 (124)
T ss_pred EEEecCHHHH
Confidence 9988775543
No 76
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.53 E-value=4.2e-13 Score=130.69 Aligned_cols=110 Identities=22% Similarity=0.342 Sum_probs=91.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccc
Q 010577 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (507)
Q Consensus 200 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~ 279 (507)
..+++|||++|+.++++.+|.++|+.||+|.+|.++. +++||||.+....+|.+|+.+|....+.++.|++.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3578899999999999999999999999999999984 58899999999999999999999999999999999998
Q ss_pred cchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhccc
Q 010577 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS 327 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 327 (507)
....+. ..+..+. ..+-|.-|||+.-.++++.+++
T Consensus 494 g~G~ks-e~k~~wD------------~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 494 GKGPKS-EYKDYWD------------VELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred cCCcch-hhhhhhh------------cccCeeEeehHhcCHHHHHhhh
Confidence 877665 3333322 2367888888655555666554
No 77
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.4e-14 Score=115.43 Aligned_cols=76 Identities=28% Similarity=0.508 Sum_probs=71.3
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+||+..+++.||+.+|..||.|.+|.|..+ +.|||||||++..+|+.|+..|+|+.|.|..|+|+++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3568999999999999999999999999999999886 578999999999999999999999999999999999864
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=1.1e-14 Score=127.53 Aligned_cols=79 Identities=28% Similarity=0.522 Sum_probs=74.5
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
..+|+|.|||+..-|-||+.+|.+||.|.+|.|+.++.| ||||+||+|++.+||++|.++|||..+.||+|+|..+..+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 457999999999999999999999999999999999877 6999999999999999999999999999999999988644
No 79
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.4e-14 Score=114.17 Aligned_cols=78 Identities=32% Similarity=0.529 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
..+++|||+||+..+++.||...|..||+|.+|+|-. ++.|||||+|++..||..|+..||+..|+|..++|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-----nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-----NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-----cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 4579999999999999999999999999999999965 34579999999999999999999999999999999998
Q ss_pred cCC
Q 010577 101 HRD 103 (507)
Q Consensus 101 ~~~ 103 (507)
.-.
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 754
No 80
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=3.6e-14 Score=101.99 Aligned_cols=70 Identities=33% Similarity=0.683 Sum_probs=64.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 26 l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
|+|+|||+++++++|+++|+.+|.|..+.+..++. +..+++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999988999998874
No 81
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=3.3e-14 Score=119.31 Aligned_cols=83 Identities=29% Similarity=0.438 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
.+..-++|||++|+|++..++|+++|++||+|++..|+.|+.+++++||+||.|++.++|.+||+.- .-.|+||+..+.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccc
Confidence 4456689999999999999999999999999999999999999999999999999999999999963 456899998887
Q ss_pred cccC
Q 010577 99 YSHR 102 (507)
Q Consensus 99 ~~~~ 102 (507)
++.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 7654
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=9.9e-15 Score=123.93 Aligned_cols=165 Identities=29% Similarity=0.422 Sum_probs=129.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchH
Q 010577 204 NVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSE 283 (507)
Q Consensus 204 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~ 283 (507)
.++|++|++.+.+.+|..+|..||.+..+.+. .+|+||.|.+..+|..|+..+++..+.+-.+.+.++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 58999999999999999999999999988876 34889999999999999999999999888888877764211
Q ss_pred HHHHHhHH-HH-HhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHH
Q 010577 284 RELELKHQ-FE-QNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361 (507)
Q Consensus 284 ~~~~~~~~-~~-~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~ 361 (507)
........ -. ............+.|.|.++..++.+.+|.++|+.+|.+....+. ++++||+|.+.++|.+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhhhh
Confidence 11000000 00 000001112234678999999999999999999999999666552 4599999999999999
Q ss_pred HHHHhCCceecCcceeeehhh
Q 010577 362 ALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 362 a~~~~~~~~~~g~~i~v~~~~ 382 (507)
|++.|++..+.++.|.+....
T Consensus 149 a~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred cchhccchhhcCceeeecccC
Confidence 999999999999999995543
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=9.1e-14 Score=121.40 Aligned_cols=76 Identities=20% Similarity=0.356 Sum_probs=70.4
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
.++|||+||++.+|+++|+++|+.||.|++|+|..+.. ++|||||+|++.++|..|+ .|||..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999999988864 5789999999999999999 5999999999999999763
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.48 E-value=1.1e-12 Score=116.23 Aligned_cols=181 Identities=20% Similarity=0.289 Sum_probs=138.1
Q ss_pred cCccceEEEcCCCCCCCHHHHHHHhcccCCeE--------EEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCC
Q 010577 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTIT--------SAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDD 270 (507)
Q Consensus 199 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~ 270 (507)
...+..|||++||.++|.+++..+|+++|-|. .|.+.++..|..+|-+.+.|...++..-|+..|++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34456799999999999999999999999875 3678888889999999999999999999999999999999
Q ss_pred ceeeeeccccchHHHH-----------HHhHHHHHhh---------HHhhhccCCcceEEecCC----CCCC-------H
Q 010577 271 KEWYVGKAQKKSEREL-----------ELKHQFEQNM---------KEAADKFQGANLYIKNLD----DSID-------D 319 (507)
Q Consensus 271 ~~~~v~~~~~~~~~~~-----------~~~~~~~~~~---------~~~~~~~~~~~l~v~~l~----~~~~-------~ 319 (507)
..++|..+.-...... ..+....... .........++|.|.|+= ...+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999988753211100 0000000000 011222345678888863 1223 3
Q ss_pred HHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 320 EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 320 ~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
++|++-+++||.|.+|.|...+ +.|.+-|.|.+.++|..||..|+|+.|.||.|..+...
T Consensus 291 edl~eec~K~G~v~~vvv~d~h---PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRH---PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccC---CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 6777889999999999887543 35789999999999999999999999999999887643
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.2e-13 Score=121.18 Aligned_cols=87 Identities=25% Similarity=0.407 Sum_probs=79.3
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.+.++.+...-++|+|+|||....|.||+.+|.+||+|++|.|+.+ ...+|||+||.|++.+||.+|.++||+..+.|
T Consensus 86 ~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEG 163 (376)
T KOG0125|consen 86 PSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEG 163 (376)
T ss_pred CCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeec
Confidence 3556666777789999999999999999999999999999999986 45799999999999999999999999999999
Q ss_pred cceEeeccc
Q 010577 93 KPIRVMYSH 101 (507)
Q Consensus 93 ~~~~v~~~~ 101 (507)
|+|.|..+.
T Consensus 164 RkIEVn~AT 172 (376)
T KOG0125|consen 164 RKIEVNNAT 172 (376)
T ss_pred eEEEEeccc
Confidence 999998765
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.4e-13 Score=118.80 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=70.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccC
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 102 (507)
.++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ++|||||+|.+.++|..|+. |++..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 58999999999999999999999999999999988743 46899999999999999996 999999999999998764
Q ss_pred C
Q 010577 103 D 103 (507)
Q Consensus 103 ~ 103 (507)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.46 E-value=5.9e-14 Score=114.82 Aligned_cols=78 Identities=28% Similarity=0.471 Sum_probs=75.2
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
.++|.|.||.+.++.++|+.+|++||.|-+|.|..|. ++.++|||||.|.+..+|+.|++.|+|..++|+.|.|.+|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4579999999999999999999999999999999998 88999999999999999999999999999999999999986
No 88
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.46 E-value=1.1e-13 Score=113.24 Aligned_cols=87 Identities=30% Similarity=0.474 Sum_probs=82.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
...-....+|.|-||-+.++.++|+.+|.+||.|-+|.|.+|..++.++|||||.|....+|++|++.|++..++|++|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCC
Q 010577 97 VMYSHRD 103 (507)
Q Consensus 97 v~~~~~~ 103 (507)
|.++.-.
T Consensus 87 Vq~aryg 93 (256)
T KOG4207|consen 87 VQMARYG 93 (256)
T ss_pred ehhhhcC
Confidence 9987644
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.3e-13 Score=117.91 Aligned_cols=82 Identities=20% Similarity=0.443 Sum_probs=77.3
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
.+-+||||+.|+++++|.+|+..|+.||.|+.|+|+.+. +|+++|||||+|++..+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 355789999999999999999999999999999999997 9999999999999999999999999999999999999987
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 643
No 90
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=7.6e-13 Score=95.65 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=71.5
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
++.|||+|||+.+|.|++.++|.+||.|..|++-... ..+|.|||.|++..+|.+|++.|+|..+.++.+.|-+-.+.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 4469999999999999999999999999999996554 35889999999999999999999999999999999987654
Q ss_pred HH
Q 010577 385 ED 386 (507)
Q Consensus 385 ~~ 386 (507)
..
T Consensus 96 ~~ 97 (124)
T KOG0114|consen 96 DA 97 (124)
T ss_pred HH
Confidence 43
No 91
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.6e-13 Score=102.17 Aligned_cols=86 Identities=22% Similarity=0.329 Sum_probs=77.6
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
..++||||+||+..++||.|.++|++.|.|..|.+--|. +..+=|||||+|-+.++|..|+.-++|..++.+.|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 356799999999999999999999999999999997776 5667899999999999999999999999999999999998
Q ss_pred hchHHHH
Q 010577 382 QRKEDRR 388 (507)
Q Consensus 382 ~~~~~~~ 388 (507)
..-...+
T Consensus 114 ~GF~eGR 120 (153)
T KOG0121|consen 114 AGFVEGR 120 (153)
T ss_pred ccchhhh
Confidence 7555433
No 92
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=99.44 E-value=3.8e-12 Score=112.46 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=64.4
Q ss_pred ceEEecCCCCCCHHHHHhcccCCC--CeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
++||+||-|++|++||.+.+...| .+.+++++.+. +|+++|||+|...+..+..+.++.|-.+.|+|..-.|-
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 699999999999999999988777 57788888887 89999999999999888889999999999998655444
No 93
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.5e-13 Score=116.14 Aligned_cols=83 Identities=23% Similarity=0.390 Sum_probs=77.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
...-+=+||||..|+++++|++|++.|+.||+|+.|.++++..+++++|||||+|.++.+...|.+..++..|+|+.|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 34467799999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ecc
Q 010577 98 MYS 100 (507)
Q Consensus 98 ~~~ 100 (507)
-+-
T Consensus 176 DvE 178 (335)
T KOG0113|consen 176 DVE 178 (335)
T ss_pred Eec
Confidence 653
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=8.7e-13 Score=121.87 Aligned_cols=80 Identities=23% Similarity=0.425 Sum_probs=72.5
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCH--HHHHHHHHHhCCceecCcceeeeh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP--EEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~--~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
..+.+|||+||++.+|+++|+.+|+.||.|.+|.|++ .+| ||||||+|.+. .++.+||..|||..+.|+.|+|.-
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 3456899999999999999999999999999999994 355 89999999987 689999999999999999999999
Q ss_pred hhchH
Q 010577 381 AQRKE 385 (507)
Q Consensus 381 ~~~~~ 385 (507)
|++.-
T Consensus 85 AKP~Y 89 (759)
T PLN03213 85 AKEHY 89 (759)
T ss_pred ccHHH
Confidence 98653
No 95
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.2e-12 Score=94.82 Aligned_cols=72 Identities=40% Similarity=0.715 Sum_probs=67.6
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
+|+|+|||..+++++|+++|+.||.|.++.+..+. +.++|+|||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999887 7788999999999999999999999999999998874
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.6e-12 Score=111.56 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
...+|+|+||++.+++++|++||+.||.|.+|.+.++. ..+++|||+|.++++|..|+. |++..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45899999999999999999999999999999999873 455799999999999999997 99999999999998655
Q ss_pred C
Q 010577 102 R 102 (507)
Q Consensus 102 ~ 102 (507)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 97
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=6e-14 Score=112.40 Aligned_cols=76 Identities=24% Similarity=0.471 Sum_probs=72.8
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
.-|||+|||++.||.||..+|+.||+|.+|.+++|. +|+|+||||+.|++..+-.-|+..|||..|.||.|+|...
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 359999999999999999999999999999999998 9999999999999999999999999999999999999854
No 98
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.1e-12 Score=112.68 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=69.7
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
.+.+|+|+||++.+|+++|+++|+.||.|.+|+|.++ +..+++|||+|++.++|..|+ .|+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 3568999999999999999999999999999999988 445689999999999999998 899999999999998764
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=3.9e-13 Score=102.06 Aligned_cols=80 Identities=20% Similarity=0.420 Sum_probs=76.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
..++.|||.++..++|+++|.+.|..||.|+.+.+--|. +|-.+|||+|+|++.++|.+|+..+||..+.|.+|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 456789999999999999999999999999999998887 8999999999999999999999999999999999999998
Q ss_pred h
Q 010577 382 Q 382 (507)
Q Consensus 382 ~ 382 (507)
-
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 4
No 100
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=4.4e-14 Score=113.16 Aligned_cols=82 Identities=24% Similarity=0.464 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
...+.-|||+|||+++||.||.-.||.||.|.+|.+++|+.||+++||||+.|++..+...|+..||+..+.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred cc
Q 010577 100 SH 101 (507)
Q Consensus 100 ~~ 101 (507)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 43
No 101
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=4.9e-12 Score=119.45 Aligned_cols=124 Identities=31% Similarity=0.569 Sum_probs=108.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccC
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 102 (507)
.++|||+|||.++++++|+++|..||.|..|.+..+..++.++|+|||.|.+.++|..|+..+++..|.|+++.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999998531
Q ss_pred ----Cccc------------------ccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeC
Q 010577 103 ----DPSL------------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD 146 (507)
Q Consensus 103 ----~~~~------------------~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~ 146 (507)
.... .......+++.+++..++..++...|..+|.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 1111 1122456899999999999999999999999966655554
No 102
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=3.1e-12 Score=92.50 Aligned_cols=71 Identities=39% Similarity=0.779 Sum_probs=66.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 25 ~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
+|+|+|||..+++++|+++|+.||.|..+.+..+. +.++++|||+|.+.++|.+|++.+++..+.|+++.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998875 678899999999999999999999998899988876
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.2e-12 Score=99.38 Aligned_cols=87 Identities=21% Similarity=0.339 Sum_probs=80.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
...+-+.-.|+|+++-.+++|++|.+.|..||+|++|.+..|..+|..+|||+|+|.+.++|++|++.+|+..+.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 34455667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCC
Q 010577 97 VMYSHRD 103 (507)
Q Consensus 97 v~~~~~~ 103 (507)
|.|+...
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9887644
No 104
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.6e-13 Score=112.03 Aligned_cols=84 Identities=32% Similarity=0.520 Sum_probs=78.5
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++|||++|..++|+.-|...|-+||.|.+|.+..|. ++++|||+||+|+..|+|..||..||+..+.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34689999999999999999999999999999999997 88999999999999999999999999999999999999998
Q ss_pred chHHH
Q 010577 383 RKEDR 387 (507)
Q Consensus 383 ~~~~~ 387 (507)
+..-+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 76443
No 105
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=3.1e-15 Score=147.17 Aligned_cols=321 Identities=17% Similarity=0.166 Sum_probs=231.0
Q ss_pred ceEEEcCCCCCCCHHHHH-HHHhcCCCEEE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 24 TSLYVGDLEANVTDSQLY-DLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~-~~f~~~G~v~~-i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
....|-|.+..-+...|. .+|.-++-+.. +... ...+...+|++...+.+++..++..+....-..-++.+....
T Consensus 480 ~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~---~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 480 KAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGP---SARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred hhhHhhhccccCCcchHHHHHHHHHhHHHHhCCch---hHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 345566777777777777 66665532111 1111 122345589999999999999999876554444333332221
Q ss_pred CCccc-----ccCCCCcEEEcCCCcccChH-HHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcC
Q 010577 102 RDPSL-----RKSGAGNIFIKNLDKAIDHK-ALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNG 174 (507)
Q Consensus 102 ~~~~~-----~~~~~~~v~v~nLp~~~t~~-~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~ 174 (507)
..... ..-......+.|+.+...+. ..+..|..+|.|+.+.+.... .-....+.++.++...++..|.. ..+
T Consensus 557 ~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~ 635 (881)
T KOG0128|consen 557 PEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAG 635 (881)
T ss_pred HHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccc
Confidence 11111 11123455667776666555 677899999999999887732 22223378888999998888887 466
Q ss_pred CccCCceeEEeeecccccchhhhcc----CccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEE-ECCCCCccceEEEE
Q 010577 175 MLLNDKQVYVGHFLRKQERDTEINK----SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVM-RDGDGKSKCFGFVN 249 (507)
Q Consensus 175 ~~~~~~~i~v~~~~~~~~~~~~~~~----~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~-~~~~~~~~g~afv~ 249 (507)
..+.++.+.+............... ....++|+++|+..+.+.+|...|..+|.+..+.+. ....+..||.||+.
T Consensus 636 ~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~ 715 (881)
T KOG0128|consen 636 GALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVE 715 (881)
T ss_pred cccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeE
Confidence 7777887777665554432222111 234568999999999999999999999987766554 44467889999999
Q ss_pred eCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCC
Q 010577 250 FENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPF 329 (507)
Q Consensus 250 f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 329 (507)
|...+++.+|+...++..++ + ..|+|.|.|+..|.++++.+|+.+
T Consensus 716 F~~~~~~~aaV~f~d~~~~g-K----------------------------------~~v~i~g~pf~gt~e~~k~l~~~~ 760 (881)
T KOG0128|consen 716 FLKPEHAGAAVAFRDSCFFG-K----------------------------------ISVAISGPPFQGTKEELKSLASKT 760 (881)
T ss_pred eecCCchhhhhhhhhhhhhh-h----------------------------------hhhheeCCCCCCchHHHHhhcccc
Confidence 99999999999654444332 1 149999999999999999999999
Q ss_pred CCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 330 GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 330 g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
|.+.+++++....|+++|.|+|.|.+..+|.+++.......+.-+.+.|....+
T Consensus 761 gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 761 GNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999889999999999999999999999988888888888888887665
No 106
>PLN03213 repressor of silencing 3; Provisional
Probab=99.37 E-value=2e-12 Score=119.49 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCH--HHHHHHHHHcCCCCCCCcceE
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA--QEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~~~~~~g~~~~ 96 (507)
+.....+|||+||+++++++||+.+|+.||.|.+|.|++. +| +|||||+|.+. +++.+||+.||+..|.|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 4455689999999999999999999999999999999954 66 79999999987 789999999999999999999
Q ss_pred eecccC
Q 010577 97 VMYSHR 102 (507)
Q Consensus 97 v~~~~~ 102 (507)
|..++.
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 998764
No 107
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=4.5e-12 Score=91.37 Aligned_cols=71 Identities=41% Similarity=0.767 Sum_probs=66.5
Q ss_pred EcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 28 VGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 28 V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
|+|||.++++++|+++|+.||.|..+.+..+..++.++++|||+|.+.++|.+|++.+++..+.|+.++|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999987778899999999999999999999999998999988773
No 108
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.33 E-value=8.2e-12 Score=90.85 Aligned_cols=74 Identities=38% Similarity=0.696 Sum_probs=69.7
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+.++|+|||+|.+.++|..|++.+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999988767889999999999999999999999999999999874
No 109
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=5e-12 Score=91.11 Aligned_cols=70 Identities=41% Similarity=0.729 Sum_probs=65.5
Q ss_pred EecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 310 IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 310 v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999887 58889999999999999999999999999999998874
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.31 E-value=5.7e-12 Score=85.68 Aligned_cols=56 Identities=38% Similarity=0.701 Sum_probs=51.2
Q ss_pred HHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 322 LKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 322 l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
|+++|++||.|+++.+..+. +++|||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998874 579999999999999999999999999999999985
No 111
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.30 E-value=4.9e-12 Score=120.45 Aligned_cols=82 Identities=27% Similarity=0.501 Sum_probs=77.6
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
++|||+|+|+++++++|.++|+..|.|.++++..|. +|+++||+|++|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 679999999999999999999999999999999998 8999999999999999999999999999999999999999755
Q ss_pred HHH
Q 010577 385 EDR 387 (507)
Q Consensus 385 ~~~ 387 (507)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 443
No 112
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.30 E-value=2.1e-11 Score=88.65 Aligned_cols=74 Identities=43% Similarity=0.819 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 25 ~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999987554 6788999999999999999999999999999998853
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.29 E-value=1.2e-11 Score=117.73 Aligned_cols=82 Identities=30% Similarity=0.607 Sum_probs=79.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 103 (507)
+.|||+|||+++++++|.++|+..|.|.+++++.|..+|+++||+|++|.+.++|.+|++.||+..+.||+|+|.|...+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred cc
Q 010577 104 PS 105 (507)
Q Consensus 104 ~~ 105 (507)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 114
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=3e-12 Score=105.99 Aligned_cols=148 Identities=24% Similarity=0.346 Sum_probs=122.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
.++....++|+|.|+-..++|+.|.++|-..|+|..|.|..+.+ ++.+ ||||.|+++.+..-|++-+|+..+.++++.
T Consensus 3 aaaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 3 AAAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred CCCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 34567889999999999999999999999999999999988754 4444 999999999999999999999999999988
Q ss_pred eecccCCcccccCCCCcEEEcC----CCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHh
Q 010577 97 VMYSHRDPSLRKSGAGNIFIKN----LDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKL 172 (507)
Q Consensus 97 v~~~~~~~~~~~~~~~~v~v~n----Lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l 172 (507)
+.+ +-++ |...++++.+...|+..|++..+++..+.+|+++.+.++.+--.-..-.++...
T Consensus 81 ~~~---------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 81 RTL---------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred ccc---------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhh
Confidence 854 3333 667789999999999999999999999999999999999876665555666655
Q ss_pred cCCccCCce
Q 010577 173 NGMLLNDKQ 181 (507)
Q Consensus 173 ~~~~~~~~~ 181 (507)
.+..+.-+.
T Consensus 146 ~~l~~~~~~ 154 (267)
T KOG4454|consen 146 QGLELFQKK 154 (267)
T ss_pred cccCcCCCC
Confidence 555444333
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=3.7e-11 Score=85.64 Aligned_cols=61 Identities=26% Similarity=0.550 Sum_probs=53.6
Q ss_pred HHHHHhccc----CCCCeeEEE-EeeCC-C--CCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 319 DEKLKQLFS----PFGSITSCK-VMRDP-S--GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 319 ~~~l~~~f~----~~g~v~~~~-~~~~~-~--g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
+++|+++|+ .||.|.+|. +..+. + +.++|++||+|.+.++|.+|+..|||+.+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 577888888 999999995 55544 4 8899999999999999999999999999999999863
No 116
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=6.2e-11 Score=112.21 Aligned_cols=151 Identities=22% Similarity=0.288 Sum_probs=102.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
...+.++|+|-|||..+++++|+++|+.||+|.+|+. +....+.+||+|-|..+|+.|+++|+...+.|++++-.
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~ 145 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRP 145 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCC
Confidence 3577899999999999999999999999999999765 34455799999999999999999999999988888722
Q ss_pred cccCCc--------------------ccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEE
Q 010577 99 YSHRDP--------------------SLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQ 158 (507)
Q Consensus 99 ~~~~~~--------------------~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~ 158 (507)
...... .........+ ++.|++..+..-++..+..+|.+.. ... +.-...-+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~~----~~~~hq~~~~ 219 (549)
T KOG4660|consen 146 GGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVDGSSPG-RET----PLLNHQRFVE 219 (549)
T ss_pred CcccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhccCcccc-ccc----cchhhhhhhh
Confidence 211100 0001111222 3348888887666677777776654 221 1122245677
Q ss_pred ECCHHHHHHHHHHhcCCccCCce
Q 010577 159 FDNEESAQKAIEKLNGMLLNDKQ 181 (507)
Q Consensus 159 f~~~e~A~~A~~~l~~~~~~~~~ 181 (507)
|.+..++..+.... |..+.+..
T Consensus 220 ~~~~~s~a~~~~~~-G~~~s~~~ 241 (549)
T KOG4660|consen 220 FADNRSYAFSEPRG-GFLISNSS 241 (549)
T ss_pred hccccchhhcccCC-ceecCCCC
Confidence 77777775544422 55555544
No 117
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=5.1e-11 Score=80.98 Aligned_cols=56 Identities=34% Similarity=0.794 Sum_probs=50.5
Q ss_pred HHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 40 LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 40 l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
|+++|++||.|.+|.+..+. +++|||+|.+.++|.+|++.||+..|.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997764 469999999999999999999999999999999875
No 118
>smart00361 RRM_1 RNA recognition motif.
Probab=99.19 E-value=8.2e-11 Score=83.85 Aligned_cols=61 Identities=25% Similarity=0.412 Sum_probs=55.1
Q ss_pred HHHHHHHHh----cCCCEEEEE-EEecCCC--CCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 37 DSQLYDLFN----QMGQVVSVR-VCRDLST--RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 37 ~~~l~~~f~----~~G~v~~i~-~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
+++|+++|+ +||.|.+|. +..+..+ +.++|++||.|.+.++|.+|+..||+..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 7666666 889999999999999999999999999999999876
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=6e-10 Score=104.69 Aligned_cols=158 Identities=20% Similarity=0.270 Sum_probs=118.8
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCC--Cccc---EEEEEeCCHHHHHHHHHHcCC-
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLG---YGYVNFSNAQEAARALEMLNF- 87 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~--~~~g---~afV~f~~~~~A~~A~~~l~~- 87 (507)
.......+-+++|+|++||++++|+.|...|..||.+.--.-.+....+ ..+| |+|+.|+++.....-+..+..
T Consensus 250 ~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~ 329 (520)
T KOG0129|consen 250 PRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG 329 (520)
T ss_pred CCCCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc
Confidence 4455567789999999999999999999999999976433322211111 2456 999999999988887777542
Q ss_pred ----------CCCCCcceEeecccCC-------cccccCCCCcEEEcCCCcccChHHHHhhhh-ccCceeEEEEeeC-CC
Q 010577 88 ----------TPLNGKPIRVMYSHRD-------PSLRKSGAGNIFIKNLDKAIDHKALHDTFS-AFGNILSCKVATD-LN 148 (507)
Q Consensus 88 ----------~~~~g~~~~v~~~~~~-------~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~-~~G~v~~v~~~~~-~~ 148 (507)
..+..+.+.|..+... ....-...++|||++||.-++.++|..+|+ .||.|..+.|-.| +-
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 1122333444433211 122234578999999999999999999998 8999999999988 45
Q ss_pred CCceeEEEEEECCHHHHHHHHHH
Q 010577 149 GQSKGYGFVQFDNEESAQKAIEK 171 (507)
Q Consensus 149 ~~~~g~a~v~f~~~e~A~~A~~~ 171 (507)
+-.+|.|-|+|.+..+-.+|+..
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhh
Confidence 88999999999999999999874
No 120
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.7e-11 Score=101.45 Aligned_cols=85 Identities=29% Similarity=0.528 Sum_probs=80.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
...|+|||++|-.+++|.-|...|-.||.|++|++..|..+.+.+||+||+|.-.|+|..||..+|...+.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc
Q 010577 101 HRDPS 105 (507)
Q Consensus 101 ~~~~~ 105 (507)
+..+.
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 86643
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.2e-12 Score=126.27 Aligned_cols=235 Identities=17% Similarity=0.138 Sum_probs=187.5
Q ss_pred CCCCCceEEEcCCCCCCCHH-HHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 19 NQFGTTSLYVGDLEANVTDS-QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~-~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
.....+...+.|+-...... ..++.|..+|.|+.|.+......-....+.++++....+++.|... .+..+.++...+
T Consensus 567 ~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~a~~~~av 645 (881)
T KOG0128|consen 567 APLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGALANRSAAV 645 (881)
T ss_pred hhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccccCCccccC
Confidence 45566778888887776555 5788999999999998876433333444788999999999998885 677788888887
Q ss_pred ecccCCcccccCC--------CCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeC-CCCCceeEEEEEECCHHHHHHH
Q 010577 98 MYSHRDPSLRKSG--------AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKA 168 (507)
Q Consensus 98 ~~~~~~~~~~~~~--------~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~~~~g~a~v~f~~~e~A~~A 168 (507)
..++......... ..++|++||+..+.+.+|...|..+|.+..+.+... ..+.-+|+||+.|..++++.+|
T Consensus 646 ~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 646 GLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 7766554333222 246899999999999999999999999988887733 5688899999999999999999
Q ss_pred HHHhcCCccCCceeEEeeecccccchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEE
Q 010577 169 IEKLNGMLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFV 248 (507)
Q Consensus 169 ~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv 248 (507)
+....+..++ -..++|++.|+..|.++++.++..+|.+.+..++....|+.+|-++|
T Consensus 726 V~f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v 782 (881)
T KOG0128|consen 726 VAFRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARV 782 (881)
T ss_pred hhhhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceec
Confidence 9865544433 13488999999999999999999999999999888889999999999
Q ss_pred EeCCHHHHHHHHHHHcCCCCCCceeeeec
Q 010577 249 NFENSDDAARAVEALNGKKFDDKEWYVGK 277 (507)
Q Consensus 249 ~f~~~~~a~~a~~~l~~~~~~~~~~~v~~ 277 (507)
.|.+..++.+++...+...+..+.+.+..
T Consensus 783 ~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 783 DYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred cCCCcchhhhhcccchhhhhhhcCccccc
Confidence 99999999998877666665555544444
No 122
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=2.4e-10 Score=107.90 Aligned_cols=166 Identities=30% Similarity=0.443 Sum_probs=122.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeecccc
Q 010577 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (507)
Q Consensus 202 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~ 280 (507)
..+|||+||+..+++++|.++|..||.+..+.+..+. ++.++|+|||+|.+.+++..|+..+++..+.++.+.+.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5889999999999999999999999999999999885 799999999999999999999999999999999999999653
Q ss_pred ----chHHHH--HHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCC-CcceEEEEe
Q 010577 281 ----KSEREL--ELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGI-SRGSGFVAF 353 (507)
Q Consensus 281 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~-~~g~afv~f 353 (507)
...... .....................+++.+++..++..++...|..+|.+....+.....+. .....++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 111110 0000000011112223456679999999999999999999999999777766554322 333344445
Q ss_pred CCHHHHHHHHHHhC
Q 010577 354 STPEEASRALLEMN 367 (507)
Q Consensus 354 ~~~~~A~~a~~~~~ 367 (507)
.....+........
T Consensus 275 ~~~~~~~~~~~~~~ 288 (306)
T COG0724 275 EASKDALESNSRGN 288 (306)
T ss_pred hHHHhhhhhhcccc
Confidence 44444444444333
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=3e-10 Score=93.92 Aligned_cols=79 Identities=23% Similarity=0.423 Sum_probs=73.0
Q ss_pred cceEEecCCCCCCHHHHHhcccCC-CCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPF-GSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~-g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|..+|..+.+.+|..+|..| |.|..+++.++. +|+|+|||||+|++.+.|.-|.+.||++.+.++.|.|.+-.+
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 358999999999999999999988 788889997776 999999999999999999999999999999999999999776
Q ss_pred h
Q 010577 384 K 384 (507)
Q Consensus 384 ~ 384 (507)
.
T Consensus 130 e 130 (214)
T KOG4208|consen 130 E 130 (214)
T ss_pred h
Confidence 5
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.7e-10 Score=100.40 Aligned_cols=85 Identities=29% Similarity=0.509 Sum_probs=79.2
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
..+.+.|||-.|..-+|+++|.-+|+.||.|.+|.+++|. +|.+-.||||+|++.+++++|.-+|++..|..++|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 4466789999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred hhchHH
Q 010577 381 AQRKED 386 (507)
Q Consensus 381 ~~~~~~ 386 (507)
+.+...
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 976544
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.99 E-value=3.5e-10 Score=96.21 Aligned_cols=169 Identities=27% Similarity=0.419 Sum_probs=125.9
Q ss_pred EEEcCCCCCCCHHH---HHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccc
Q 010577 205 VYVKNLSESTTEED---LQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281 (507)
Q Consensus 205 l~v~~lp~~~t~~~---l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~ 281 (507)
.+++++...+..+- +...|+.+-.+....++++..+..++++|+.|.....-..+-..-+++.+..+.+++......
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 44555544444433 255677776677777778877888899999998877766666555666666666655544332
Q ss_pred hHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHH
Q 010577 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEAS 360 (507)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~ 360 (507)
...... .-......||-+.|..+++++.|-..|.+|-.....+++++. +|+++||+||.|.+..++.
T Consensus 179 edPsl~------------ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 179 EDPSLA------------EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred CCcccc------------cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 221100 011233469999999999999999999999888889999997 9999999999999999999
Q ss_pred HHHHHhCCceecCcceeeehhhchH
Q 010577 361 RALLEMNGKMVVSKPLYVALAQRKE 385 (507)
Q Consensus 361 ~a~~~~~~~~~~g~~i~v~~~~~~~ 385 (507)
+|+.+++|+.++.+.|.+.-..-++
T Consensus 247 rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999999887655444
No 126
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=6.9e-10 Score=98.80 Aligned_cols=75 Identities=25% Similarity=0.454 Sum_probs=67.9
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHh-CCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM-NGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~-~~~~~~g~~i~v~~~~ 382 (507)
...+|||++|-+.+++.+|+++|.+||+|+++++... +++|||+|.+.++|+.|.++. |...|+|.+|.|.|.+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 3458999999999999999999999999999999886 569999999999999998765 5567799999999998
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4.1e-09 Score=99.18 Aligned_cols=164 Identities=18% Similarity=0.298 Sum_probs=111.9
Q ss_pred cCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEEC---CCCCccc---eEEEEeCCHHHHHHHHHHHcCCCCCCce
Q 010577 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRD---GDGKSKC---FGFVNFENSDDAARAVEALNGKKFDDKE 272 (507)
Q Consensus 199 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~~~g---~afv~f~~~~~a~~a~~~l~~~~~~~~~ 272 (507)
..-++.|||++||++++|++|...|..||.+..---.+. .....+| |+|+.|+++......+....- ....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 445678999999999999999999999998643221111 1123456 999999999998887765433 2222
Q ss_pred eeeeccccchHHHHHHhHH-----HHHhhHHhhhccCCcceEEecCCCCCCHHHHHhccc-CCCCeeEEEEeeCC-CCCC
Q 010577 273 WYVGKAQKKSERELELKHQ-----FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFS-PFGSITSCKVMRDP-SGIS 345 (507)
Q Consensus 273 ~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~v~~~~~~~~~-~g~~ 345 (507)
+.+................ ..-.........+.+||||++||.-++.++|..+|+ -||.|..+-|..|+ -+-+
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 2222221111100000000 000000112234567999999999999999999998 89999999999884 6778
Q ss_pred cceEEEEeCCHHHHHHHHHH
Q 010577 346 RGSGFVAFSTPEEASRALLE 365 (507)
Q Consensus 346 ~g~afv~f~~~~~A~~a~~~ 365 (507)
+|-+-|+|.+..+=.+||++
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 99999999999999999864
No 128
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=4.6e-10 Score=93.22 Aligned_cols=140 Identities=24% Similarity=0.389 Sum_probs=118.9
Q ss_pred CCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeec
Q 010577 109 SGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFL 188 (507)
Q Consensus 109 ~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~ 188 (507)
+..++|+|.|+...++++-|.++|-..|+|..|.|....++..+ ||||.|.++-...-|++.++|..+.++.+.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~--- 82 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT--- 82 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc---
Confidence 44578999999999999999999999999999999999888887 99999999999999999999999998887773
Q ss_pred ccccchhhhccCccceEEEcC----CCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHc
Q 010577 189 RKQERDTEINKSKFTNVYVKN----LSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALN 264 (507)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~v~~----lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 264 (507)
++-++ |...++++.+...|+.-+.++.+.+..+.+++++.+.|+.+....+.-.++....
T Consensus 83 ----------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 83 ----------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred ----------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhc
Confidence 23333 5667788888888999999999988888889999999999888777777776555
Q ss_pred CCCC
Q 010577 265 GKKF 268 (507)
Q Consensus 265 ~~~~ 268 (507)
+...
T Consensus 147 ~l~~ 150 (267)
T KOG4454|consen 147 GLEL 150 (267)
T ss_pred ccCc
Confidence 5443
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.87 E-value=6.1e-09 Score=86.27 Aligned_cols=87 Identities=23% Similarity=0.337 Sum_probs=77.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~-G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
-.......-++|..+|..+.+.+|..+|+.+ |.|+.+++.+++.||+++|||||+|++++.|.-|-+.+|+..+.++-|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3445566789999999999999999999999 788888888999999999999999999999999999999999999998
Q ss_pred EeecccCC
Q 010577 96 RVMYSHRD 103 (507)
Q Consensus 96 ~v~~~~~~ 103 (507)
.+++-...
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 88765433
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.86 E-value=7.5e-09 Score=97.87 Aligned_cols=87 Identities=28% Similarity=0.478 Sum_probs=79.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
....-.|.|+|++|...+...||+.+|++||+|...+|+.+..+-..++|+||.+.+.++|.+||+.|+...+.|+-|.|
T Consensus 400 grs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 400 GRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred cccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 34566789999999999999999999999999999999998888778899999999999999999999999999999999
Q ss_pred ecccCCc
Q 010577 98 MYSHRDP 104 (507)
Q Consensus 98 ~~~~~~~ 104 (507)
..+++.+
T Consensus 480 EkaKNEp 486 (940)
T KOG4661|consen 480 EKAKNEP 486 (940)
T ss_pred eecccCc
Confidence 9877553
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=1.9e-09 Score=107.56 Aligned_cols=159 Identities=20% Similarity=0.282 Sum_probs=134.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeecccc
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~ 280 (507)
.+.+||++||+..+++.+|+..|..+|.|.++.+....-+.-.-|+|+.|.+.+.+-.|...+.+..|....+.+.+...
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 35679999999999999999999999999999987775444456899999999999999888888888777666655532
Q ss_pred chHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHH
Q 010577 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEAS 360 (507)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~ 360 (507)
. ....+.+++++|..|+....|...|..||.|..|.+.... -||+|.|++...|.
T Consensus 451 k--------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq-----~yayi~yes~~~aq 505 (975)
T KOG0112|consen 451 K--------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ-----PYAYIQYESPPAAQ 505 (975)
T ss_pred c--------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC-----cceeeecccCccch
Confidence 1 1234569999999999999999999999999998875542 39999999999999
Q ss_pred HHHHHhCCceecC--cceeeehhhch
Q 010577 361 RALLEMNGKMVVS--KPLYVALAQRK 384 (507)
Q Consensus 361 ~a~~~~~~~~~~g--~~i~v~~~~~~ 384 (507)
.|++.+.|..|+| +++.|.|+...
T Consensus 506 ~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred hhHHHHhcCcCCCCCcccccccccCC
Confidence 9999999999985 78999998753
No 132
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.9e-09 Score=93.40 Aligned_cols=93 Identities=26% Similarity=0.370 Sum_probs=85.9
Q ss_pred CCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC
Q 010577 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (507)
Q Consensus 11 ~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 90 (507)
.|.-+.+.--.+...|||=-|.+-++.+||.-+||.||+|.+|.|++|..+|.+.-||||+|.+.++.++|.-.++...|
T Consensus 227 vGDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI 306 (479)
T KOG0415|consen 227 VGDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI 306 (479)
T ss_pred hcCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee
Confidence 45566777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEeecccCC
Q 010577 91 NGKPIRVMYSHRD 103 (507)
Q Consensus 91 ~g~~~~v~~~~~~ 103 (507)
+.++|.|.|+..-
T Consensus 307 DDrRIHVDFSQSV 319 (479)
T KOG0415|consen 307 DDRRIHVDFSQSV 319 (479)
T ss_pred ccceEEeehhhhh
Confidence 9999999887643
No 133
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=1.1e-08 Score=91.36 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=71.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc-CCCCCCCcce
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPI 95 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~~ 95 (507)
.......++|||++|-..++|.+|+++|.+||.|.+|.++... ++|||+|.+.+.|++|.+++ +...++|.+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 4456778999999998899999999999999999999998753 38999999999999999985 5677899999
Q ss_pred EeecccC
Q 010577 96 RVMYSHR 102 (507)
Q Consensus 96 ~v~~~~~ 102 (507)
+|.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999887
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.82 E-value=7.9e-09 Score=88.12 Aligned_cols=170 Identities=21% Similarity=0.319 Sum_probs=131.7
Q ss_pred cEEEcCCCcccChHH-H--HhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecc
Q 010577 113 NIFIKNLDKAIDHKA-L--HDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189 (507)
Q Consensus 113 ~v~v~nLp~~~t~~~-l--~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~ 189 (507)
..++.++-..+..+. | ...|+.+-.+...+++.+..+.-.+++|+.|.....-..+...-++.+++...++..-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 344555544444443 2 5677777777777888887888899999999988888877776677777777677655544
Q ss_pred cccchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCC
Q 010577 190 KQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKF 268 (507)
Q Consensus 190 ~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 268 (507)
...............||.+.|..+++++-|...|.+|-.-....++++. +++++||+||.|.+..++..|+..++++.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 4444444455566789999999999999999999999887777777776 799999999999999999999999999999
Q ss_pred CCceeeeeccccch
Q 010577 269 DDKEWYVGKAQKKS 282 (507)
Q Consensus 269 ~~~~~~v~~~~~~~ 282 (507)
+.+.|....+..+.
T Consensus 258 gsrpiklRkS~wke 271 (290)
T KOG0226|consen 258 GSRPIKLRKSEWKE 271 (290)
T ss_pred ccchhHhhhhhHHh
Confidence 99998776554443
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.81 E-value=4.2e-08 Score=73.05 Aligned_cols=69 Identities=22% Similarity=0.372 Sum_probs=61.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~--G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
.+||.|+|||...+.++|.+++... |...-+-+..|..++.+.|||||.|.+.+.|.+..+.+++..+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 3799999999999999999988654 67777788888889999999999999999999999999987764
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=3.8e-09 Score=105.46 Aligned_cols=161 Identities=18% Similarity=0.285 Sum_probs=134.2
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
.......+++|+++||+..+++.+|+..|..+|.|.+|.|..-. .+.-.-|+||.|.+.+.+-.|+-++.+..|....+
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 34567789999999999999999999999999999999986652 23344589999999999999999988877766666
Q ss_pred EeecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCC
Q 010577 96 RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175 (507)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~ 175 (507)
++.+... .....+.+++++|...+....|...|..||.|..|.+-+. ..|||+.|.+.+.++.|++.+.+.
T Consensus 444 r~glG~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 444 RIGLGQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred ccccccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcC
Confidence 6665543 3345678999999999999999999999999998887663 559999999999999999999999
Q ss_pred ccCC--ceeEEee
Q 010577 176 LLND--KQVYVGH 186 (507)
Q Consensus 176 ~~~~--~~i~v~~ 186 (507)
.+++ +.+.|..
T Consensus 515 p~G~P~~r~rvdl 527 (975)
T KOG0112|consen 515 PLGGPPRRLRVDL 527 (975)
T ss_pred cCCCCCccccccc
Confidence 9976 3455543
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.77 E-value=1.4e-08 Score=88.89 Aligned_cols=79 Identities=28% Similarity=0.487 Sum_probs=74.9
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
.++|+|.||++.++++||+++|..||.++.+-+..++.|.+.|.|-|.|...++|.+|++.+||..++|+.+.+....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999988754
No 138
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=1.4e-08 Score=96.11 Aligned_cols=79 Identities=29% Similarity=0.480 Sum_probs=72.5
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
.+++|||.+|...+-..+|+.+|++||.|+..+++.+. +--.++|+||++.+.++|.+||+.||...++|+.|.|.-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 45689999999999999999999999999999998886 44468899999999999999999999999999999998775
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=7.7e-08 Score=84.32 Aligned_cols=85 Identities=31% Similarity=0.479 Sum_probs=76.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
..+....+|+|.|||+.+.++||+++|..||.++.+.+..+ ..|.+.|.|-|.|...++|.+|++.+++..++|+.+++
T Consensus 78 ~~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 78 INETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred ccCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 45666789999999999999999999999999888888877 56999999999999999999999999999999999888
Q ss_pred ecccCC
Q 010577 98 MYSHRD 103 (507)
Q Consensus 98 ~~~~~~ 103 (507)
......
T Consensus 157 ~~i~~~ 162 (243)
T KOG0533|consen 157 EIISSP 162 (243)
T ss_pred EEecCc
Confidence 765543
No 140
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.64 E-value=5.7e-07 Score=80.28 Aligned_cols=76 Identities=22% Similarity=0.280 Sum_probs=61.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhcccCC--eEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeee
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEYGT--ITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~--v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~ 276 (507)
...++||+||-|.+|+++|...+...|. +.+++++.+. +|.++|||+|...+..+.++.++.|-.+.+.|..-.|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3457899999999999999999887774 4555666555 69999999999999999999998888888877665443
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.64 E-value=1.7e-07 Score=69.82 Aligned_cols=81 Identities=23% Similarity=0.300 Sum_probs=68.9
Q ss_pred CcceEEecCCCCCCHHHHHhcccCC--CCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceec----Cccee
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPF--GSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVV----SKPLY 377 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~----g~~i~ 377 (507)
.+||.|+|||...|.++|.+++... |...-+.+..|- ++-+.|||||.|.+.++|.+-.+.++|+.+. .|.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3689999999999999999888543 677778887776 6668999999999999999999999998885 68889
Q ss_pred eehhhchH
Q 010577 378 VALAQRKE 385 (507)
Q Consensus 378 v~~~~~~~ 385 (507)
|.||+-+.
T Consensus 81 i~yAriQG 88 (97)
T PF04059_consen 81 ISYARIQG 88 (97)
T ss_pred EehhHhhC
Confidence 99997543
No 142
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.64 E-value=8e-08 Score=91.41 Aligned_cols=86 Identities=19% Similarity=0.343 Sum_probs=72.5
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
.+-.......+|||+|||.++++++|+++|+.||.|+...|......+++.+|+||+|.+.++++.||.. +...+.+++
T Consensus 280 ~~~~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~k 358 (419)
T KOG0116|consen 280 NNQEPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRK 358 (419)
T ss_pred CCcceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCee
Confidence 4444555666799999999999999999999999999988877654455558999999999999999996 688889999
Q ss_pred eEeeccc
Q 010577 95 IRVMYSH 101 (507)
Q Consensus 95 ~~v~~~~ 101 (507)
+.|+.-.
T Consensus 359 l~Veek~ 365 (419)
T KOG0116|consen 359 LNVEEKR 365 (419)
T ss_pred EEEEecc
Confidence 9997544
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.61 E-value=2.8e-08 Score=90.79 Aligned_cols=176 Identities=23% Similarity=0.246 Sum_probs=132.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEE-CCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccc
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMR-DGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~ 279 (507)
...+++++++.+.+.+.++..++..+|......... .....+++++++.|...+.+..++.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 456789999999999998999999999766665555 3457789999999999999999986444444444444333332
Q ss_pred cchHHHHHHhHHHHHhhHHhhhccCCcceE-EecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHH
Q 010577 280 KKSERELELKHQFEQNMKEAADKFQGANLY-IKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~ 357 (507)
....... ............+++ |++++..+++++|+.+|..+|.|..+++..++ ++.++|+|+|+|.+..
T Consensus 167 ~~~~~~~--------n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRGLRPK--------NKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred ccccccc--------chhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 2220000 000001111222455 99999999999999999999999999998887 8899999999999999
Q ss_pred HHHHHHHHhCCceecCcceeeehhhchH
Q 010577 358 EASRALLEMNGKMVVSKPLYVALAQRKE 385 (507)
Q Consensus 358 ~A~~a~~~~~~~~~~g~~i~v~~~~~~~ 385 (507)
.+..++.. ....+.++++.+.+.++..
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 239 SKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hHHHHhhc-ccCcccCcccccccCCCCc
Confidence 99999977 8889999999999987553
No 144
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=5.1e-07 Score=89.11 Aligned_cols=18 Identities=6% Similarity=0.102 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHhcCCcc
Q 010577 160 DNEESAQKAIEKLNGMLL 177 (507)
Q Consensus 160 ~~~e~A~~A~~~l~~~~~ 177 (507)
....++.+|++.+-+..+
T Consensus 207 k~~~eiIrClka~mNn~~ 224 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKF 224 (1102)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 445567777776544444
No 145
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.55 E-value=9.7e-08 Score=87.26 Aligned_cols=170 Identities=22% Similarity=0.310 Sum_probs=132.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
.....++++++++.+.+.+.++..++..+|.+.............+++++++.|...+.+..|+.........++.+..-
T Consensus 84 ~~~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 84 LRGSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred cccccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 33568999999999999999999999999977777666655677899999999999999999999743334444433332
Q ss_pred cccCCc--------ccccCCCCcE-EEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHH
Q 010577 99 YSHRDP--------SLRKSGAGNI-FIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKA 168 (507)
Q Consensus 99 ~~~~~~--------~~~~~~~~~v-~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A 168 (507)
+..... ........++ ++.+|+..++.++|+..|..+|.|..+++.... ++...+++|+.|.....+..+
T Consensus 164 l~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~ 243 (285)
T KOG4210|consen 164 LNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLA 243 (285)
T ss_pred ccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHH
Confidence 222111 1112233344 499999999999999999999999999998884 688999999999999999999
Q ss_pred HHHhcCCccCCceeEEeeecc
Q 010577 169 IEKLNGMLLNDKQVYVGHFLR 189 (507)
Q Consensus 169 ~~~l~~~~~~~~~i~v~~~~~ 189 (507)
+.. +...+.++.+.+.....
T Consensus 244 ~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 244 LND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred hhc-ccCcccCcccccccCCC
Confidence 987 78888888888865443
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.55 E-value=3.8e-07 Score=64.07 Aligned_cols=73 Identities=29% Similarity=0.420 Sum_probs=48.4
Q ss_pred ceEEEcCCCCCCCHHHHH----HHHhcCC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 24 TSLYVGDLEANVTDSQLY----DLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~----~~f~~~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
+.|+|.|||.+.+...|+ +++.-|| +|.+|. + +.|+|.|.+.+.|.+|.+.+++..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------G---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------C---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 579999999999887754 5555675 887772 1 379999999999999999999999999999999
Q ss_pred cccCCccc
Q 010577 99 YSHRDPSL 106 (507)
Q Consensus 99 ~~~~~~~~ 106 (507)
+.......
T Consensus 73 ~~~~~r~~ 80 (90)
T PF11608_consen 73 FSPKNREF 80 (90)
T ss_dssp SS--S---
T ss_pred EcCCcccc
Confidence 98655433
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=7.2e-08 Score=91.82 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=65.2
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceee
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v 378 (507)
...+|+|-|||..+++++|+.+|+.||+|++|+..+. .+|.+||+|-|+.+|++|+++|++..+.|++|+.
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 4567999999999999999999999999999887776 4678999999999999999999999999999983
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.43 E-value=4.4e-07 Score=80.07 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=73.9
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
.+...+||+|+...+|.+++..+|+.||.|..+.+..+. .|.++||+||+|.+.+.+..++. |++..+.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345679999999999999999999999999999999998 66799999999999999999997 9999999999999988
Q ss_pred hc
Q 010577 382 QR 383 (507)
Q Consensus 382 ~~ 383 (507)
+.
T Consensus 178 r~ 179 (231)
T KOG4209|consen 178 RT 179 (231)
T ss_pred ee
Confidence 63
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.42 E-value=4.8e-07 Score=86.20 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=68.9
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...+|||+|||.+++.++|+++|..||.|+...|.... .++..+||||+|++.+++..|+++- -..+++++|.|+-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 44569999999999999999999999999998887665 4555599999999999999999544 678899999999876
Q ss_pred chH
Q 010577 383 RKE 385 (507)
Q Consensus 383 ~~~ 385 (507)
...
T Consensus 366 ~~~ 368 (419)
T KOG0116|consen 366 PGF 368 (419)
T ss_pred ccc
Confidence 533
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.28 E-value=1.2e-06 Score=77.28 Aligned_cols=85 Identities=24% Similarity=0.371 Sum_probs=77.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
..+...+.++|+|+...++.+++...|+.||.|..|.+..++..+.++||+||+|.+.+.+.+++. ||+..|.|+.+.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 466778999999999999999999999999999999999999888999999999999999999999 8999999999998
Q ss_pred ecccCC
Q 010577 98 MYSHRD 103 (507)
Q Consensus 98 ~~~~~~ 103 (507)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 765533
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.28 E-value=3.4e-06 Score=59.38 Aligned_cols=68 Identities=28% Similarity=0.442 Sum_probs=47.5
Q ss_pred ceEEecCCCCCCHHHH----HhcccCCC-CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 307 NLYIKNLDDSIDDEKL----KQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l----~~~f~~~g-~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
.|+|.|||.+.+...| +.++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|+.|.|+|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 5899999999887655 55666785 677762 357999999999999999999999999999999998
Q ss_pred hc
Q 010577 382 QR 383 (507)
Q Consensus 382 ~~ 383 (507)
..
T Consensus 75 ~~ 76 (90)
T PF11608_consen 75 PK 76 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.24 E-value=9.2e-07 Score=80.35 Aligned_cols=211 Identities=15% Similarity=0.143 Sum_probs=125.2
Q ss_pred CCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCC----CCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEee
Q 010577 111 AGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLN----GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGH 186 (507)
Q Consensus 111 ~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~ 186 (507)
.+.|-|.||.+.+|.+.+..+|...|.|..+.|+...+ ......|||.|.+...+..|.. |.++.+-++.+.|.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 34788999999999999999999999999999988532 3356689999999998888876 888888888888754
Q ss_pred ecccccchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCC
Q 010577 187 FLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGK 266 (507)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 266 (507)
+....... .. +|..++.-..+--....+| |-|.+.- + .
T Consensus 86 ~~~~~~p~----------------------r~---af~~l~~~navprll~pdg-------~Lp~~~~-----l-----t 123 (479)
T KOG4676|consen 86 YGDEVIPD----------------------RF---AFVELADQNAVPRLLPPDG-------VLPGDRP-----L-----T 123 (479)
T ss_pred cCCCCCcc----------------------HH---HHHhcCcccccccccCCCC-------ccCCCCc-----c-----c
Confidence 43221111 11 2332222111100000011 0000000 0 0
Q ss_pred CCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCc
Q 010577 267 KFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISR 346 (507)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~ 346 (507)
.++.....+... +......... ..+ . -..+|+|.+|...+...++.+.|..+|+|...++..... .
T Consensus 124 ~~nh~p~ailkt--P~Lp~~~~A~-----kle---e-irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~---s 189 (479)
T KOG4676|consen 124 KINHSPNAILKT--PELPPQAAAK-----KLE---E-IRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR---S 189 (479)
T ss_pred cccCCccceecC--CCCChHhhhh-----hhH---H-HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC---C
Confidence 000000000000 0000000000 000 0 124799999999999999999999999999988765543 2
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 347 g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
-+|-|+|........|+ ..+|..+.-....+.
T Consensus 190 ~~c~~sf~~qts~~hal-r~~gre~k~qhsr~a 221 (479)
T KOG4676|consen 190 SSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRA 221 (479)
T ss_pred cchhhhHhhhhhHHHHH-Hhcchhhhhhhhhhh
Confidence 36779999877777776 566776653333333
No 153
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.23 E-value=3.1e-06 Score=82.86 Aligned_cols=82 Identities=29% Similarity=0.458 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST---RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
....+.|||+||++.++++.|...|-.||+|.+|+|+..... .+.+.|+||.|-+..+|.+|++.|++..+.+.+++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 567789999999999999999999999999999999764321 23556899999999999999999999999999999
Q ss_pred eeccc
Q 010577 97 VMYSH 101 (507)
Q Consensus 97 v~~~~ 101 (507)
+-|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99985
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.14 E-value=9.6e-06 Score=62.22 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=48.6
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhC-----CceecCcceeeeh
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN-----GKMVVSKPLYVAL 380 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~-----~~~~~g~~i~v~~ 380 (507)
+.|+|.++...++.++|++.|+.||.|..|++.+..+ .|+|.|.+.++|.+|++.+. +..+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 4689999999999999999999999999999987643 79999999999999998774 3466777777777
Q ss_pred hhchHHH
Q 010577 381 AQRKEDR 387 (507)
Q Consensus 381 ~~~~~~~ 387 (507)
-...+..
T Consensus 77 LeGeeE~ 83 (105)
T PF08777_consen 77 LEGEEEE 83 (105)
T ss_dssp --HHHHH
T ss_pred CCCHHHH
Confidence 6544444
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.04 E-value=8.1e-07 Score=81.44 Aligned_cols=152 Identities=26% Similarity=0.397 Sum_probs=118.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCC-CCCCCcceEeecc
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF-TPLNGKPIRVMYS 100 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~--G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~~~v~~~ 100 (507)
.++|++||...++.+||..+|... +.-..+.+ + .|||||.+.+..-|.+|++.|++ ..+.|+++.+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-K-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-e-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 579999999999999999999754 22112222 2 25999999999999999999987 4689999998776
Q ss_pred cCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCc
Q 010577 101 HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180 (507)
Q Consensus 101 ~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~ 180 (507)
...... .+.+-|+|+|+..-++-|..+...||.++.|..+...+. .-..-|+|.+.+.++.|+..+++..+.+.
T Consensus 74 v~kkqr----srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~en~ 147 (584)
T KOG2193|consen 74 VPKKQR----SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQLENQ 147 (584)
T ss_pred hhHHHH----hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHhhhh
Confidence 544222 356899999999999999999999999998877544211 11233678999999999999999988888
Q ss_pred eeEEeeecc
Q 010577 181 QVYVGHFLR 189 (507)
Q Consensus 181 ~i~v~~~~~ 189 (507)
.+.+.+..+
T Consensus 148 ~~k~~YiPd 156 (584)
T KOG2193|consen 148 HLKVGYIPD 156 (584)
T ss_pred hhhcccCch
Confidence 888765544
No 156
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.02 E-value=9.4e-06 Score=79.62 Aligned_cols=81 Identities=35% Similarity=0.546 Sum_probs=72.4
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC----CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceee
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP----SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v 378 (507)
...++|||+||+..++++.|...|..||.|.+|+++.-. ..+.+.|+||-|-+..+|.+|++.|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 346789999999999999999999999999999886553 3456779999999999999999999999999999999
Q ss_pred ehhhc
Q 010577 379 ALAQR 383 (507)
Q Consensus 379 ~~~~~ 383 (507)
-|++.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99863
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.01 E-value=1.1e-05 Score=73.28 Aligned_cols=87 Identities=21% Similarity=0.317 Sum_probs=78.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEE--------EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCC
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~--------~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 88 (507)
.....-+.+|||-+||..+++.+|.++|.+||.|. .|++.+++.|+++++-|.|.|.+...|+.|+.-+++.
T Consensus 60 ~~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 60 MADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred cccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 34467788999999999999999999999998774 4888999999999999999999999999999999999
Q ss_pred CCCCcceEeecccCC
Q 010577 89 PLNGKPIRVMYSHRD 103 (507)
Q Consensus 89 ~~~g~~~~v~~~~~~ 103 (507)
.|.+.+++|.++...
T Consensus 140 df~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERR 154 (351)
T ss_pred cccCCCchhhhhhhc
Confidence 999999998776654
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.98 E-value=1.7e-05 Score=60.82 Aligned_cols=59 Identities=29% Similarity=0.423 Sum_probs=40.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 88 (507)
..|+|.++...++.++|++.|+.||.|.-|.+.++.. .|||-|.+.++|++|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999999977543 7999999999999999987543
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.92 E-value=8.9e-06 Score=73.83 Aligned_cols=82 Identities=23% Similarity=0.419 Sum_probs=71.9
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeE--------EEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITS--------CKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~ 374 (507)
...+|||.+|+..+++++|.++|..+|.|.. |.|-++. ++.++|-|.|.|++...|+.|++-++++.|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 3457999999999999999999999987754 4555554 889999999999999999999999999999999
Q ss_pred ceeeehhhchH
Q 010577 375 PLYVALAQRKE 385 (507)
Q Consensus 375 ~i~v~~~~~~~ 385 (507)
.|+|.++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999987544
No 160
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.77 E-value=6.6e-06 Score=75.66 Aligned_cols=154 Identities=24% Similarity=0.406 Sum_probs=117.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCC-CCCceeeeeccccc
Q 010577 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKK-FDDKEWYVGKAQKK 281 (507)
Q Consensus 203 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~~~~~~v~~~~~~ 281 (507)
+.+++++|....+.+++..+|.....-.+-.++- -.||+||.+.+..-|.+|++.++++. +.|.++.+...-.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 3589999999999999999997542111111111 25699999999999999999998764 67777777655433
Q ss_pred hHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHH
Q 010577 282 SERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASR 361 (507)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~ 361 (507)
..+ .+.+-|+|+|...-++-|..++..||.|+.|....... -....-|+|.+.+.+..
T Consensus 77 kqr--------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 77 KQR--------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQ 134 (584)
T ss_pred HHH--------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHH
Confidence 222 12478999999999999999999999999997644332 12234567889999999
Q ss_pred HHHHhCCceecCcceeeehhhc
Q 010577 362 ALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 362 a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
|++.++|..+....+++.|-..
T Consensus 135 ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 135 AIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHhhcchHhhhhhhhcccCch
Confidence 9999999999999999988754
No 161
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.66 E-value=2.4e-05 Score=71.44 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=111.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST---RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 25 ~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
.|.|.||.+.++.+.+..+|.-+|+|.++.++....+ .-....|||.|.+...+..|.. |....|-++.+.|...-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 8999999999999999999999999999998763222 1244689999999999998887 67777777766554322
Q ss_pred CCc------------------------------cccc------------------------CCCCcEEEcCCCcccChHH
Q 010577 102 RDP------------------------------SLRK------------------------SGAGNIFIKNLDKAIDHKA 127 (507)
Q Consensus 102 ~~~------------------------------~~~~------------------------~~~~~v~v~nLp~~~t~~~ 127 (507)
... .+.. +..+++.|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 100 0000 0125688999999999999
Q ss_pred HHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccC
Q 010577 128 LHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178 (507)
Q Consensus 128 l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~ 178 (507)
+.+.|..+|.|....+.. +....+|.++|........|+. .+|..+.
T Consensus 168 ~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999886554433 4455578899999999999987 4665554
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.63 E-value=0.00014 Score=47.91 Aligned_cols=53 Identities=19% Similarity=0.466 Sum_probs=42.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 82 (507)
++.|-|.+.+.+.. ++|+.+|+.||.|..+.+... ..+.||.|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 36789999986655 556668889999999888522 238999999999999985
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.59 E-value=0.00016 Score=62.52 Aligned_cols=93 Identities=25% Similarity=0.291 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCee
Q 010577 254 DDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSIT 333 (507)
Q Consensus 254 ~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~ 333 (507)
.-|..|...|++....++.+.+.++... .|+|.||...++.|.+...|+.||.|+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~a-------------------------~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMHA-------------------------ELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeeccc-------------------------eEEEEecchhhhhHHHHHhhhhcCccc
Confidence 3466777789999999999999998652 499999999999999999999999999
Q ss_pred EEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 010577 334 SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371 (507)
Q Consensus 334 ~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~ 371 (507)
...+..|..+++.+-++|+|...-.|.+|....+-.-+
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 98888898999999999999999999999987754333
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.53 E-value=0.00024 Score=61.49 Aligned_cols=90 Identities=23% Similarity=0.352 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCCCCCCCcceEeecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeE
Q 010577 75 AQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGY 154 (507)
Q Consensus 75 ~~~A~~A~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~ 154 (507)
..-|..|..+|++....|+.++|.|+... .|+|.||...++.+.+...|+.||+|....++.+..+...+.
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~a---------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~e 74 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMHA---------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTRE 74 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeeccc---------eEEEEecchhhhhHHHHHhhhhcCccchheeeeccccccccc
Confidence 34577888899999999999999998764 699999999999999999999999999988888888888899
Q ss_pred EEEEECCHHHHHHHHHHhc
Q 010577 155 GFVQFDNEESAQKAIEKLN 173 (507)
Q Consensus 155 a~v~f~~~e~A~~A~~~l~ 173 (507)
++|.|...-.|.+|+..+.
T Consensus 75 g~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCR 93 (275)
T ss_pred chhhhhcchhHHHHHHHhc
Confidence 9999999999999998763
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.48 E-value=0.00026 Score=63.49 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=62.6
Q ss_pred ceEEecCCCCCCHHHH------HhcccCCCCeeEEEEeeCC-CCCC-cce--EEEEeCCHHHHHHHHHHhCCceecCcce
Q 010577 307 NLYIKNLDDSIDDEKL------KQLFSPFGSITSCKVMRDP-SGIS-RGS--GFVAFSTPEEASRALLEMNGKMVVSKPL 376 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l------~~~f~~~g~v~~~~~~~~~-~g~~-~g~--afv~f~~~~~A~~a~~~~~~~~~~g~~i 376 (507)
-+||-+|+..+-.|++ .++|..||.|..|.+-+.. ...+ .+. .+|+|.+.++|.+||...+|..++||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 4899999988877663 4689999999999886664 2111 122 3999999999999999999999999999
Q ss_pred eeehhhch
Q 010577 377 YVALAQRK 384 (507)
Q Consensus 377 ~v~~~~~~ 384 (507)
+..|...+
T Consensus 196 katYGTTK 203 (480)
T COG5175 196 KATYGTTK 203 (480)
T ss_pred eeecCchH
Confidence 99987543
No 166
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.39 E-value=0.00044 Score=62.05 Aligned_cols=82 Identities=23% Similarity=0.437 Sum_probs=64.9
Q ss_pred CCCCceEEEcCCCCCCCHHH----H--HHHHhcCCCEEEEEEEecCCCCCcc-cEE--EEEeCCHHHHHHHHHHcCCCCC
Q 010577 20 QFGTTSLYVGDLEANVTDSQ----L--YDLFNQMGQVVSVRVCRDLSTRRSL-GYG--YVNFSNAQEAARALEMLNFTPL 90 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~----l--~~~f~~~G~v~~i~~~~~~~~~~~~-g~a--fV~f~~~~~A~~A~~~l~~~~~ 90 (507)
-.....|||-+||..+..++ | .++|.+||+|..|.|.+....-++. +.+ ||.|.+.|+|.+||.+.++..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 34556789999998877666 3 4689999999999887765332222 224 9999999999999999999999
Q ss_pred CCcceEeeccc
Q 010577 91 NGKPIRVMYSH 101 (507)
Q Consensus 91 ~g~~~~v~~~~ 101 (507)
+||.|+..+..
T Consensus 191 DGr~lkatYGT 201 (480)
T COG5175 191 DGRVLKATYGT 201 (480)
T ss_pred cCceEeeecCc
Confidence 99999998755
No 167
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=97.36 E-value=0.0034 Score=53.60 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.5
Q ss_pred CCCCCC
Q 010577 445 QQLVPG 450 (507)
Q Consensus 445 ~~~~p~ 450 (507)
+.+.||
T Consensus 167 p~~~pg 172 (341)
T KOG2893|consen 167 PAPAPG 172 (341)
T ss_pred CCCCCc
Confidence 334444
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.33 E-value=0.0004 Score=45.76 Aligned_cols=52 Identities=17% Similarity=0.371 Sum_probs=41.3
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHH
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~ 363 (507)
+.|-|.+.+.+..+. +..+|..||.|..+.+... ..+.+|+|++..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 357888888765544 5568889999999988732 348999999999999985
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00039 Score=66.88 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=61.7
Q ss_pred cceEEecCCCCC------CHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecC-cceee
Q 010577 306 ANLYIKNLDDSI------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KPLYV 378 (507)
Q Consensus 306 ~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g-~~i~v 378 (507)
++|+|.|+|--- -...|..+|+++|.+..+.+..++.|..+|+.|++|++..+|..|++.|||+.++. ++..|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 468999998522 12456778999999999999999988899999999999999999999999999974 45555
Q ss_pred e
Q 010577 379 A 379 (507)
Q Consensus 379 ~ 379 (507)
.
T Consensus 139 ~ 139 (698)
T KOG2314|consen 139 R 139 (698)
T ss_pred e
Confidence 4
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.29 E-value=7.9e-05 Score=64.60 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=54.2
Q ss_pred HHHHhccc-CCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 320 EKLKQLFS-PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 320 ~~l~~~f~-~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
++|...|+ +||+|+++.+..+-....+|-++|.|...++|.+|++.|||..+.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555565 9999999988776555568889999999999999999999999999999999875
No 171
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.26 E-value=0.00052 Score=60.40 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=55.1
Q ss_pred CHHHHHhcccCCCCeeEEEEeeCCCC-CC-cceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 318 DDEKLKQLFSPFGSITSCKVMRDPSG-IS-RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 318 ~~~~l~~~f~~~g~v~~~~~~~~~~g-~~-~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
-++++++.+++||.|..|.|+..+.- .. ---.||+|+..++|.+|+-.|||+.|+|+.+..-|....
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 35788899999999999999887521 11 113699999999999999999999999999998887643
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.14 E-value=0.0015 Score=52.29 Aligned_cols=73 Identities=25% Similarity=0.372 Sum_probs=53.3
Q ss_pred CCcceEEecCC-----CCCCH----HHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCc
Q 010577 304 QGANLYIKNLD-----DSIDD----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374 (507)
Q Consensus 304 ~~~~l~v~~l~-----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~ 374 (507)
+..||.|.-+. ....+ ++|.+.|..||.|.-+++..+ .-+|+|.+-++|.+|+ .++|..++|+
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaal-s~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAAL-SLDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHH-HGCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHH-ccCCcEECCE
Confidence 34466666555 22233 367778899999999988765 6899999999999998 8999999999
Q ss_pred ceeeehhhch
Q 010577 375 PLYVALAQRK 384 (507)
Q Consensus 375 ~i~v~~~~~~ 384 (507)
.|+|+.+.+.
T Consensus 98 ~l~i~LKtpd 107 (146)
T PF08952_consen 98 TLKIRLKTPD 107 (146)
T ss_dssp EEEEEE----
T ss_pred EEEEEeCCcc
Confidence 9999988754
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.11 E-value=0.00057 Score=63.56 Aligned_cols=68 Identities=19% Similarity=0.418 Sum_probs=57.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEec---CCCC---C-------cccEEEEEeCCHHHHHHHHHHc
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD---LSTR---R-------SLGYGYVNFSNAQEAARALEML 85 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~---~~~~---~-------~~g~afV~f~~~~~A~~A~~~l 85 (507)
.+..+++|.+-|||.+-..+.|.++|+.+|.|+.|+|+.. ..+. . .+-+|+|+|...+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4468999999999999999999999999999999999875 1111 1 3568999999999999999977
Q ss_pred C
Q 010577 86 N 86 (507)
Q Consensus 86 ~ 86 (507)
+
T Consensus 307 ~ 307 (484)
T KOG1855|consen 307 N 307 (484)
T ss_pred c
Confidence 5
No 174
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.09 E-value=0.0013 Score=49.61 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=51.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEec---------CCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD---------LSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~---------~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
..++.|.|-+.|.. ....|.+.|++||.|++..-... ...+. .+..|.|++..+|.+|+.+ |+..|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~--NWi~I~Y~~~~~A~rAL~~-NG~i~~ 79 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG--NWIHITYDNPLSAQRALQK-NGTIFS 79 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCT--TEEEEEESSHHHHHHHHTT-TTEEET
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCC--CEEEEECCCHHHHHHHHHh-CCeEEc
Confidence 35667999999876 77889999999999988750000 01122 3889999999999999996 999888
Q ss_pred Ccce-Eeecc
Q 010577 92 GKPI-RVMYS 100 (507)
Q Consensus 92 g~~~-~v~~~ 100 (507)
|.-+ -|.+.
T Consensus 80 g~~mvGV~~~ 89 (100)
T PF05172_consen 80 GSLMVGVKPC 89 (100)
T ss_dssp TCEEEEEEE-
T ss_pred CcEEEEEEEc
Confidence 8643 34443
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.02 E-value=0.00053 Score=59.39 Aligned_cols=75 Identities=25% Similarity=0.392 Sum_probs=62.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC--------CC----cccEEEEEeCCHHHHHHHHHHcCCCC
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST--------RR----SLGYGYVNFSNAQEAARALEMLNFTP 89 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~--------~~----~~g~afV~f~~~~~A~~A~~~l~~~~ 89 (507)
..-.||++|||++.+-..|+++|+.||.|-.|.+-..... +. ..--++|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5578999999999999999999999999999988665444 22 22346799999999999999999999
Q ss_pred CCCcceE
Q 010577 90 LNGKPIR 96 (507)
Q Consensus 90 ~~g~~~~ 96 (507)
|.|++-.
T Consensus 153 Iggkk~S 159 (278)
T KOG3152|consen 153 IGGKKKS 159 (278)
T ss_pred cCCCCCC
Confidence 9887543
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.98 E-value=0.00042 Score=60.00 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=59.9
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-C--------CCCc----ceEEEEeCCHHHHHHHHHHhCCceec
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-S--------GISR----GSGFVAFSTPEEASRALLEMNGKMVV 372 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~--------g~~~----g~afv~f~~~~~A~~a~~~~~~~~~~ 372 (507)
-.||+++||.......|+++|+.||.|-.|.+-+.. . |... -.+.|+|.+-..|.++.+.|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 359999999999999999999999999999987664 2 2222 23789999999999999999999999
Q ss_pred Ccc
Q 010577 373 SKP 375 (507)
Q Consensus 373 g~~ 375 (507)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 875
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0029 Score=61.09 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=63.3
Q ss_pred CCCCCCceEEEcCCCCC--CCHHH----HHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 18 ANQFGTTSLYVGDLEAN--VTDSQ----LYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~--~~~~~----l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
+.+.-...|.|-|+|-- +..+. |..+|+++|+|.+..+..+.. |.++||.|++|.+..+|.+|++.|||..++
T Consensus 53 ~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 53 TAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 34466788999999843 22332 567899999999999887755 459999999999999999999999997764
Q ss_pred -CcceEeec
Q 010577 92 -GKPIRVMY 99 (507)
Q Consensus 92 -g~~~~v~~ 99 (507)
+.+..|+.
T Consensus 132 knHtf~v~~ 140 (698)
T KOG2314|consen 132 KNHTFFVRL 140 (698)
T ss_pred ccceEEeeh
Confidence 45566653
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.81 E-value=0.0037 Score=55.25 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCCEEEEEEEecCCCC-CcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCC
Q 010577 37 DSQLYDLFNQMGQVVSVRVCRDLSTR-RSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 37 ~~~l~~~f~~~G~v~~i~~~~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 103 (507)
++++++-+.+||.|..|.|+.....- ....-.||+|...++|.+|+-.||+..|.|+.++..|.+.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 45789999999999999998764321 12234799999999999999999999999999999876644
No 179
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.81 E-value=0.0017 Score=60.60 Aligned_cols=68 Identities=26% Similarity=0.327 Sum_probs=57.0
Q ss_pred CCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeC---CC---CC--------ceeEEEEEECCHHHHHHHHHHhcCC
Q 010577 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD---LN---GQ--------SKGYGFVQFDNEESAQKAIEKLNGM 175 (507)
Q Consensus 110 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~---~~--------~~g~a~v~f~~~e~A~~A~~~l~~~ 175 (507)
..++|.+.|||.+-..+.|.++|..+|.|..|+|++- .. +. .+-+|+|+|...+.|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6789999999999999999999999999999999876 21 22 1457999999999999999977544
Q ss_pred cc
Q 010577 176 LL 177 (507)
Q Consensus 176 ~~ 177 (507)
..
T Consensus 310 ~~ 311 (484)
T KOG1855|consen 310 QN 311 (484)
T ss_pred hh
Confidence 33
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.80 E-value=0.005 Score=46.46 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=51.4
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEE-EeeC-------CCCCCcceEEEEeCCHHHHHHHHHHhCCceecCc-c
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCK-VMRD-------PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-P 375 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~-~~~~-------~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~-~ 375 (507)
.+.|.|-+.|.. ....|.++|++||.|.+.. +.++ +.-....+..|+|++..+|.+|+ ..||..+.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 345888888887 4556778999999998775 1111 10112458999999999999999 7899999886 4
Q ss_pred eeeehhhc
Q 010577 376 LYVALAQR 383 (507)
Q Consensus 376 i~v~~~~~ 383 (507)
+-|.+.++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55777643
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.77 E-value=0.00069 Score=58.90 Aligned_cols=64 Identities=28% Similarity=0.478 Sum_probs=52.4
Q ss_pred HHHHHHHh-cCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccC
Q 010577 38 SQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (507)
Q Consensus 38 ~~l~~~f~-~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 102 (507)
+||...|. +||.|.++.|... ......|-+||.|..+++|.+|+..||+-.|.|++|...++.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 8999999977654 3456678899999999999999999999999999999987653
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.76 E-value=0.0034 Score=50.27 Aligned_cols=74 Identities=28% Similarity=0.395 Sum_probs=53.2
Q ss_pred CCCceEEEcCCCC------CCCH---HHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 21 FGTTSLYVGDLEA------NVTD---SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 21 ~~~~~l~V~nLp~------~~~~---~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
.+..||.|+=+.. ..++ .+|.+.|+.||.|.-|+++.+ .-+|.|.+.++|.+|+. +++..+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 4556777776651 2332 368889999999998888765 36999999999999999 7999999
Q ss_pred CcceEeecccCC
Q 010577 92 GKPIRVMYSHRD 103 (507)
Q Consensus 92 g~~~~v~~~~~~ 103 (507)
|+.++|+.-..+
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999765544
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.71 E-value=0.0033 Score=61.09 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=65.8
Q ss_pred CCcceEEecCCCCCCHHHHHhccc-CCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee---cCcceeee
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFS-PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV---VSKPLYVA 379 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~---~g~~i~v~ 379 (507)
.++.|+|.||-.-.|.-.|+.++. ..|.|++..|.+- +..|||.|.+.++|.+.+++|||..+ +.+.|.+.
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 456799999999999999999998 4556666633222 33699999999999999999999877 58999999
Q ss_pred hhhchHHHHHH
Q 010577 380 LAQRKEDRRAR 390 (507)
Q Consensus 380 ~~~~~~~~~~~ 390 (507)
|+...+....+
T Consensus 518 f~~~deld~hr 528 (718)
T KOG2416|consen 518 FVRADELDKHR 528 (718)
T ss_pred ecchhHHHHHh
Confidence 99766555443
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.67 E-value=0.0071 Score=40.80 Aligned_cols=54 Identities=26% Similarity=0.422 Sum_probs=44.4
Q ss_pred cceEEecCCCCCCHHHHHhcccCC---CCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPF---GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~ 366 (507)
.+|+|+++. +.+-++|+.+|..| .....|.++.|.+ |-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS------CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc------EEEEECCHHHHHHHHHcC
Confidence 369999985 47778899999888 2467888888843 899999999999999764
No 185
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.47 E-value=0.053 Score=52.68 Aligned_cols=71 Identities=17% Similarity=0.355 Sum_probs=57.5
Q ss_pred CcceEEecCCCCCCHHHHHhcccC--CCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCC--ceecCcceeeeh
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSP--FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG--KMVVSKPLYVAL 380 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~--~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~--~~~~g~~i~v~~ 380 (507)
+|.|.|+.|+..+-+|+|+.+|+. +-.+++|.+-.+.. -||+|++..||..|.+.|.. +.|.||.|...+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 456789999999999999999964 56888998876633 69999999999999988753 567788776655
Q ss_pred h
Q 010577 381 A 381 (507)
Q Consensus 381 ~ 381 (507)
+
T Consensus 249 K 249 (684)
T KOG2591|consen 249 K 249 (684)
T ss_pred h
Confidence 4
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.40 E-value=0.018 Score=45.46 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=58.1
Q ss_pred CCCCCCCCceEEEcCCCCCC----CHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 16 ANANQFGTTSLYVGDLEANV----TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~----~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
.+.-+.+..+|.|+=|.... +...|.+.++.||+|.+|..... . .|.|.|.+..+|-+|+..+.. ..-
T Consensus 79 k~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----q--savVvF~d~~SAC~Av~Af~s-~~p 150 (166)
T PF15023_consen 79 KNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----Q--SAVVVFKDITSACKAVSAFQS-RAP 150 (166)
T ss_pred ccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----c--eEEEEehhhHHHHHHHHhhcC-CCC
Confidence 45567889999998776654 23346667789999999988543 2 699999999999999999765 445
Q ss_pred CcceEeeccc
Q 010577 92 GKPIRVMYSH 101 (507)
Q Consensus 92 g~~~~v~~~~ 101 (507)
|..+...|-.
T Consensus 151 gtm~qCsWqq 160 (166)
T PF15023_consen 151 GTMFQCSWQQ 160 (166)
T ss_pred CceEEeeccc
Confidence 6666555543
No 187
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.25 E-value=0.11 Score=46.57 Aligned_cols=158 Identities=13% Similarity=0.193 Sum_probs=107.0
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecC-------CCCCcccEEEEEeCCHHHHHHHHHH---
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL-------STRRSLGYGYVNFSNAQEAARALEM--- 84 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~-------~~~~~~g~afV~f~~~~~A~~A~~~--- 84 (507)
+.+..+...|.|.+.||..+++...+...|.+||+|++|.++.+. ...+......+.|-+.+.+......
T Consensus 7 PkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQ 86 (309)
T PF10567_consen 7 PKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQ 86 (309)
T ss_pred CCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHH
Confidence 346678889999999999999999999999999999999999875 1223446789999999876554433
Q ss_pred -cC--CCCCCCcceEeecccC-----C-------------------cccccCCCCcEEEcCCCcccChHHHHh----hhh
Q 010577 85 -LN--FTPLNGKPIRVMYSHR-----D-------------------PSLRKSGAGNIFIKNLDKAIDHKALHD----TFS 133 (507)
Q Consensus 85 -l~--~~~~~g~~~~v~~~~~-----~-------------------~~~~~~~~~~v~v~nLp~~~t~~~l~~----~f~ 133 (507)
|. +..+....+.+.+..- . .......++.|.|.= ...+.++++.+ ++.
T Consensus 87 rLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~ 165 (309)
T PF10567_consen 87 RLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLK 165 (309)
T ss_pred HHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhc
Confidence 22 2345666777665431 1 011122345555542 23443444332 222
Q ss_pred ccC----ceeEEEEeeCC---CCCceeEEEEEECCHHHHHHHHHHhc
Q 010577 134 AFG----NILSCKVATDL---NGQSKGYGFVQFDNEESAQKAIEKLN 173 (507)
Q Consensus 134 ~~G----~v~~v~~~~~~---~~~~~g~a~v~f~~~e~A~~A~~~l~ 173 (507)
.-+ -+++|.++... ......||.++|-+...|...++.+.
T Consensus 166 ~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 166 NSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred cCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 223 46788888763 24567899999999999999999875
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.25 E-value=0.029 Score=37.89 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=42.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcC----CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQM----GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~----G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 85 (507)
.+|+|+++. +.+.++|+.+|..| ++. .|.=+-|. .|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999994 79999999999999 543 44444442 4789999999999999864
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.17 E-value=0.013 Score=46.22 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=55.5
Q ss_pred cCCcceEEecCCCCCC----HHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceee
Q 010577 303 FQGANLYIKNLDDSID----DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~----~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v 378 (507)
.+..+|.|+=|..++. -..|...++.||.|.+|.+.-. --|.|.|+|..+|-+|+.++.. ..-|..+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC------ceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 3455788886665542 2345556789999999988653 3599999999999999999986 566788888
Q ss_pred ehhh
Q 010577 379 ALAQ 382 (507)
Q Consensus 379 ~~~~ 382 (507)
+|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 8753
No 190
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.02 E-value=0.0056 Score=59.60 Aligned_cols=79 Identities=24% Similarity=0.239 Sum_probs=63.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHh-cCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC---CCcc
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFN-QMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL---NGKP 94 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~-~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~ 94 (507)
....+..|||+||=.-.|.-.|++++. .+|.|.+.+|-+- +-.|||.|.+.++|..-+..||+..| +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 677889999999999999999999997 6678877754222 22799999999999999999998766 5566
Q ss_pred eEeecccCC
Q 010577 95 IRVMYSHRD 103 (507)
Q Consensus 95 ~~v~~~~~~ 103 (507)
|.+.|...+
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 777666544
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.99 E-value=0.085 Score=40.72 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=56.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~-G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
....+....+.+-..|+-++-++|..+.+.+ ..|..++|+++... ++-.+.+.|.+.++|......+||+.|..
T Consensus 7 ~~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 7 LPDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455556666666666667777787777766 47778899887543 45578899999999999999999988754
No 192
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.94 E-value=0.0056 Score=58.01 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=71.5
Q ss_pred CCCCCCCCCCCCceEEEcCCCCCC-CHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC
Q 010577 12 NGGGANANQFGTTSLYVGDLEANV-TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (507)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~-~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 90 (507)
|.+-.......++.|-+.-.|... +..+|...|.+||.|..|.+-... -.|.|.|.+..+|-+|-. .++..|
T Consensus 361 G~gv~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avl 433 (526)
T KOG2135|consen 361 GRGVPGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVL 433 (526)
T ss_pred CCCCCcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-ccccee
Confidence 335566677888889898888886 577899999999999999885541 168999999999988887 589999
Q ss_pred CCcceEeecccCCc
Q 010577 91 NGKPIRVMYSHRDP 104 (507)
Q Consensus 91 ~g~~~~v~~~~~~~ 104 (507)
+++.|+|.|.+...
T Consensus 434 nnr~iKl~whnps~ 447 (526)
T KOG2135|consen 434 NNRFIKLFWHNPSP 447 (526)
T ss_pred cCceeEEEEecCCc
Confidence 99999999988764
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.88 E-value=0.0058 Score=51.98 Aligned_cols=74 Identities=11% Similarity=0.176 Sum_probs=45.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhc-CCCE---EEEEEEecCCC--CCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQ-MGQV---VSVRVCRDLST--RRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~-~G~v---~~i~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.+....+|.||+||+.++|+++.+.++. ++.- ..+.-..+... .....-|||.|.+.+++...+..+++..|.+
T Consensus 3 ~~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 3 KEKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ------EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CcccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3456679999999999999999998877 5554 22321111111 1123469999999999999999999876644
No 194
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.82 E-value=0.066 Score=41.32 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=55.7
Q ss_pred ceEEecCCCCCCHHHHHhcccCCC-CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecC---cceeeehh
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS---KPLYVALA 381 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g---~~i~v~~~ 381 (507)
.+.+...|+.++.++|..+.+.+- .|..++++++... ++-.++++|.+.++|..-.+.+||+.++. ..++|-|.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 355556667777788877777664 6778999988643 45678999999999999999999998863 44555444
No 195
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.45 E-value=0.059 Score=38.45 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=40.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 010577 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87 (507)
Q Consensus 25 ~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 87 (507)
..+|+ .|.+....||.++|+.||.|. |.-+.| + .|||...+.+.|..++..++.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d--T-----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND--T-----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECT--T-----EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC--C-----cEEEEeecHHHHHHHHHHhcc
Confidence 34555 999999999999999999974 444333 2 699999999999999998863
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.23 E-value=0.034 Score=53.93 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=59.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhc--CCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCC--CCCCCc
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQ--MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF--TPLNGK 93 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~--~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~ 93 (507)
-...+.+.|+||-||..+.+++|+-+|+. |=++.+|.+-... . =||.|++..||+.|.+.|.. +.|.|+
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---n----WyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---N----WYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---c----eEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 35567788999999999999999999985 4577788775532 1 48999999999999999863 568888
Q ss_pred ceEeec
Q 010577 94 PIRVMY 99 (507)
Q Consensus 94 ~~~v~~ 99 (507)
.|..+.
T Consensus 243 pImARI 248 (684)
T KOG2591|consen 243 PIMARI 248 (684)
T ss_pred chhhhh
Confidence 775543
No 197
>PHA03378 EBNA-3B; Provisional
Probab=95.05 E-value=0.31 Score=48.78 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=7.0
Q ss_pred cceEEecCCCC
Q 010577 306 ANLYIKNLDDS 316 (507)
Q Consensus 306 ~~l~v~~l~~~ 316 (507)
-|||-..|+-+
T Consensus 539 pcvy~~~l~ie 549 (991)
T PHA03378 539 PCVYTEDLDIE 549 (991)
T ss_pred CceeecccCcc
Confidence 36777777644
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.97 E-value=0.015 Score=53.17 Aligned_cols=78 Identities=24% Similarity=0.422 Sum_probs=60.7
Q ss_pred ceEEecCCCCCCHHHHH---hcccCCCCeeEEEEeeCCC--CCC--cceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 307 NLYIKNLDDSIDDEKLK---QLFSPFGSITSCKVMRDPS--GIS--RGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~--g~~--~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
-+||-+|+....++++. +.|..||.|.+|.+.++.. ..+ ..-++|+|...++|.+||...+|...+|+.++..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 47888898776655553 4889999999999988752 111 2237999999999999999999999999998777
Q ss_pred hhhch
Q 010577 380 LAQRK 384 (507)
Q Consensus 380 ~~~~~ 384 (507)
+...+
T Consensus 159 ~gttk 163 (327)
T KOG2068|consen 159 LGTTK 163 (327)
T ss_pred hCCCc
Confidence 76533
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.67 E-value=0.059 Score=45.96 Aligned_cols=61 Identities=26% Similarity=0.321 Sum_probs=46.6
Q ss_pred CHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceecCcceeeehhhc
Q 010577 318 DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN--GKMVVSKPLYVALAQR 383 (507)
Q Consensus 318 ~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~--~~~~~g~~i~v~~~~~ 383 (507)
..+.|+++|..|+.+..+..++. -+=..|.|.+.++|.+|...|+ +..+.|..++|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45889999999999988888775 3358999999999999999999 9999999999999853
No 200
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.66 E-value=0.084 Score=37.68 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=36.8
Q ss_pred CCCCHHHHHhcccCCC-----CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 315 DSIDDEKLKQLFSPFG-----SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 315 ~~~~~~~l~~~f~~~g-----~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
..++..+|..++...+ .|-.|++..+ |+||+-.. +.|..+++.|++..+.|+.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4567778888776554 4556777766 99999988 7899999999999999999999764
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.46 E-value=0.21 Score=44.82 Aligned_cols=77 Identities=23% Similarity=0.237 Sum_probs=56.5
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
...+..+....=|-|-++|.. .-..|..+|++||.|++...- .+|+ +-.|.|.+.-+|.||+.+ |++.|.|.
T Consensus 188 pte~~~d~~D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~---~ngN---wMhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 188 PTEEEADAADTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP---SNGN---WMHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred ccccccccccceEEEeccCcc-chhHHHHHHHhhCeeeeeecC---CCCc---eEEEEecchhHHHHhhhh-cCeeeccc
Confidence 334444445677888888754 456788999999998776443 3444 889999999999999996 88888876
Q ss_pred c-eEee
Q 010577 94 P-IRVM 98 (507)
Q Consensus 94 ~-~~v~ 98 (507)
. |-|.
T Consensus 260 vmiGVk 265 (350)
T KOG4285|consen 260 VMIGVK 265 (350)
T ss_pred eEEeee
Confidence 4 4443
No 202
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.37 E-value=0.15 Score=43.39 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=50.4
Q ss_pred CCcceEEecCCCCCCHHHHHhcccC-CCCe---eEEEEeeCC--CCC-CcceEEEEeCCHHHHHHHHHHhCCceecCc--
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSP-FGSI---TSCKVMRDP--SGI-SRGSGFVAFSTPEEASRALLEMNGKMVVSK-- 374 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v---~~~~~~~~~--~g~-~~g~afv~f~~~~~A~~a~~~~~~~~~~g~-- 374 (507)
....|.|++||..+|++++.+.++. ++.- ..+.-.... ... .-.-|+|.|.+.+++..-...++|+.|.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3457999999999999999998887 6655 233311222 111 123589999999999999999999888542
Q ss_pred ---ceeeehhh
Q 010577 375 ---PLYVALAQ 382 (507)
Q Consensus 375 ---~i~v~~~~ 382 (507)
...|.+|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 34556653
No 203
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.30 E-value=0.23 Score=35.54 Aligned_cols=54 Identities=26% Similarity=0.471 Sum_probs=40.5
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~ 367 (507)
.||--..|.++-..||.++|+.||.|. |.++.|. -|||...+.+.|..++..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 455555999999999999999999864 5555552 59999999999999998875
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.04 E-value=0.11 Score=44.44 Aligned_cols=63 Identities=25% Similarity=0.343 Sum_probs=46.3
Q ss_pred CCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcC--CCCCCCcceEeecccCC
Q 010577 35 VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 35 ~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~~~v~~~~~~ 103 (507)
...+.|+++|+.++.+..+...+.-. -..|.|.+.++|.+|...|+ +..|.|..+++.++...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34578999999999888888776543 58999999999999999999 88999999999988433
No 205
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.84 E-value=0.23 Score=34.19 Aligned_cols=56 Identities=16% Similarity=0.395 Sum_probs=43.7
Q ss_pred CCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceee
Q 010577 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (507)
Q Consensus 315 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v 378 (507)
..++.++|+..+..|+ -. +|..+.+ || ||.|.+.++|++|....+|..+.+-+|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~-~~--~I~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR-WD--RIRDDRT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC-cc--eEEecCC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3578899999999994 23 3444544 34 99999999999999999999988776654
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.78 E-value=0.25 Score=47.03 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=60.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcC-CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~-G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
++.|.|--+|...+-.||..|+..+ --|..|++++|... ++-...|.|.+.++|....+++||..|..-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 8999999999999999999999766 47899999997443 444788999999999999999999888553
No 207
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.61 E-value=0.041 Score=50.32 Aligned_cols=81 Identities=17% Similarity=0.323 Sum_probs=61.4
Q ss_pred CCCceEEEcCCCCCCCHHH-HH--HHHhcCCCEEEEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 21 FGTTSLYVGDLEANVTDSQ-LY--DLFNQMGQVVSVRVCRDLS---TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~-l~--~~f~~~G~v~~i~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
-....+||-+|+.....++ |+ +.|..||.|..|.+.++.. .......++|.|...++|..||...++....|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3456788888987765444 43 3788899999999988652 1122234899999999999999999999999998
Q ss_pred eEeeccc
Q 010577 95 IRVMYSH 101 (507)
Q Consensus 95 ~~v~~~~ 101 (507)
++..+..
T Consensus 155 lka~~gt 161 (327)
T KOG2068|consen 155 LKASLGT 161 (327)
T ss_pred hHHhhCC
Confidence 7776544
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.10 E-value=2.2 Score=38.53 Aligned_cols=180 Identities=13% Similarity=0.197 Sum_probs=104.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC--------CCCccceEEEEeCCHHHHHHHHHH----Hc--CCC
Q 010577 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG--------DGKSKCFGFVNFENSDDAARAVEA----LN--GKK 267 (507)
Q Consensus 202 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~--------~~~~~g~afv~f~~~~~a~~a~~~----l~--~~~ 267 (507)
++.|.+.|+..+++...+...|.+||.|+++.++.+. +........+.|-+.+.+..-... +. ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4568889999999999999999999999999998776 223345678999998887654432 11 123
Q ss_pred CCCceeeeeccccch------HH-HHHHhHHHHHhhH-HhhhccCCcceEEecCCCCC-CHHHHHhcc---cCCC----C
Q 010577 268 FDDKEWYVGKAQKKS------ER-ELELKHQFEQNMK-EAADKFQGANLYIKNLDDSI-DDEKLKQLF---SPFG----S 331 (507)
Q Consensus 268 ~~~~~~~v~~~~~~~------~~-~~~~~~~~~~~~~-~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f---~~~g----~ 331 (507)
+....+.+.+..-.- .. ............. .-.....+++|.|.-- ..+ +++-+.+.+ ..-+ .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceEE
Confidence 444455554443110 00 0000000000001 1122234566777644 444 333333322 1112 5
Q ss_pred eeEEEEeeCC---CCCCcceEEEEeCCHHHHHHHHHHhCC--ceec-Ccceeeehhh
Q 010577 332 ITSCKVMRDP---SGISRGSGFVAFSTPEEASRALLEMNG--KMVV-SKPLYVALAQ 382 (507)
Q Consensus 332 v~~~~~~~~~---~g~~~g~afv~f~~~~~A~~a~~~~~~--~~~~-g~~i~v~~~~ 382 (507)
+++|+++... ..-+..||.++|-+...|...++-+.. ...+ .+...|++..
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 7788887664 233567999999999999999887753 3322 4555565554
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.91 E-value=0.23 Score=47.31 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=61.7
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCC-CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecC---cceeeeh
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS---KPLYVAL 380 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g---~~i~v~~ 380 (507)
++.|+|-.+|..+|..||..|+..+- .|..+++++|.... +-.++|.|.+.++|..-.+.+||+.|+. ..++|-|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pn-rymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~ 152 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPN-RYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLY 152 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCc-eEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEE
Confidence 45799999999999999999997764 78899999975432 4468999999999999999999998863 3444444
Q ss_pred h
Q 010577 381 A 381 (507)
Q Consensus 381 ~ 381 (507)
.
T Consensus 153 V 153 (493)
T KOG0804|consen 153 V 153 (493)
T ss_pred E
Confidence 4
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.72 E-value=0.31 Score=33.57 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 34 NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 34 ~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
.++-++++..++.|+- ..|. .+ .+| | ||.|.+.++|++|....++..+.+-++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d-~tG----f-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DD-RTG----F-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ec-CCE----E-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5789999999999954 3443 23 233 3 89999999999999999888776665544
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.68 E-value=0.052 Score=55.51 Aligned_cols=71 Identities=31% Similarity=0.406 Sum_probs=61.8
Q ss_pred eEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee--cCcceeeehhhc
Q 010577 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYVALAQR 383 (507)
Q Consensus 308 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~--~g~~i~v~~~~~ 383 (507)
.++.|..-..+-.-|..+|+.||.|.+.+.+++-. .|.|+|.+.+.|..|+++++|+.+ .|-+.+|.|++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45666677788889999999999999999988743 799999999999999999999877 488999999974
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.26 E-value=0.6 Score=33.25 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHhcCC-----CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 34 NVTDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 34 ~~~~~~l~~~f~~~G-----~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
.++..+|..++...+ .|-.|.+..+ |+||+-... .|.++++.|++..+.|++++|+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 467888999887663 6777888654 889998765 69999999999999999999875
No 213
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=0.84 Score=43.86 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=7.7
Q ss_pred EEEeCCHHHHHHHHHHh
Q 010577 350 FVAFSTPEEASRALLEM 366 (507)
Q Consensus 350 fv~f~~~~~A~~a~~~~ 366 (507)
.++|.+ +++++..+.+
T Consensus 318 e~dfSD-DEkEaeak~~ 333 (483)
T KOG2236|consen 318 EQDFSD-DEKEAEAKQM 333 (483)
T ss_pred hhccch-HHHHHHHHHH
Confidence 456666 3444433344
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.50 E-value=0.15 Score=52.38 Aligned_cols=74 Identities=31% Similarity=0.414 Sum_probs=60.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC--CCcceEeecccCC
Q 010577 26 LYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL--NGKPIRVMYSHRD 103 (507)
Q Consensus 26 l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~~~v~~~~~~ 103 (507)
..+.|.+-..+..-|.-+|+.||.|.+++..++.. .|.|+|.+.+.|..|.+.|++++. -|-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34455555677778999999999999999988754 799999999999999999998764 6778999888755
Q ss_pred cc
Q 010577 104 PS 105 (507)
Q Consensus 104 ~~ 105 (507)
+.
T Consensus 375 ~~ 376 (1007)
T KOG4574|consen 375 PM 376 (1007)
T ss_pred cc
Confidence 43
No 215
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.11 E-value=0.088 Score=50.25 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=58.2
Q ss_pred ceEEecCCCCC-CHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 307 NLYIKNLDDSI-DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 307 ~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
.|-+.-.+... |-++|...|..||.|..|.+.... --|.|+|.+..+|-+|. ..++..|+++-|+|.|-++
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCch-----hhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 45555566554 568999999999999999886552 25999999999998887 7899999999999999775
No 216
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.94 E-value=0.26 Score=36.11 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=45.4
Q ss_pred EEEEeCCHHHHHHHHHHcCC-CCCCCcceEeecccC--Cc-----ccccCCCCcEEEcCCCcccChHHHHhhhh
Q 010577 68 GYVNFSNAQEAARALEMLNF-TPLNGKPIRVMYSHR--DP-----SLRKSGAGNIFIKNLDKAIDHKALHDTFS 133 (507)
Q Consensus 68 afV~f~~~~~A~~A~~~l~~-~~~~g~~~~v~~~~~--~~-----~~~~~~~~~v~v~nLp~~~t~~~l~~~f~ 133 (507)
|+|.|.++.=|++.+..-.. ..+.+..+.|..+.- .. .......++|.|.|||..+++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999985322 334555555554321 11 11233567899999999999999987643
No 217
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=88.45 E-value=2.6 Score=39.79 Aligned_cols=18 Identities=11% Similarity=0.412 Sum_probs=7.9
Q ss_pred EEEeCCHHHHHHHHHHcC
Q 010577 69 YVNFSNAQEAARALEMLN 86 (507)
Q Consensus 69 fV~f~~~~~A~~A~~~l~ 86 (507)
.+.+++.++-..-++.|+
T Consensus 43 ~lk~KDp~qi~~~m~kld 60 (487)
T KOG4672|consen 43 VLKYKDPDQITSKMEKLD 60 (487)
T ss_pred hhccCCHHHHHHHHHhhc
Confidence 344444444444444444
No 218
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.63 E-value=0.84 Score=41.18 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=51.2
Q ss_pred eEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcc-eeeehhhch
Q 010577 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP-LYVALAQRK 384 (507)
Q Consensus 308 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~-i~v~~~~~~ 384 (507)
|-|-+++... ..-|..+|++||+|.+.... .+| .+-.|.|.+.-+|.+|+ ..||+.|+|.. |-|+-+..+
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~ng---NwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SNG---NWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecC--CCC---ceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecCCH
Confidence 5666666653 34577899999999887665 233 38999999999999999 67888888753 445554443
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.45 E-value=3.2 Score=41.20 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=66.9
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhcC----CCEEEEEEEecCC----------CC----------------------
Q 010577 20 QFGTTSLYVGDLEAN-VTDSQLYDLFNQM----GQVVSVRVCRDLS----------TR---------------------- 62 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~-~~~~~l~~~f~~~----G~v~~i~~~~~~~----------~~---------------------- 62 (507)
...+++|-|=|+.|+ +.-.||.-+|+.| |.|++|.|+...- .|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 567899999999998 6889999999877 6899999843110 00
Q ss_pred ---------------CcccEEEEEeCCHHHHHHHHHHcCCCCCCC--cceEeecccCCccc
Q 010577 63 ---------------RSLGYGYVNFSNAQEAARALEMLNFTPLNG--KPIRVMYSHRDPSL 106 (507)
Q Consensus 63 ---------------~~~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~~~v~~~~~~~~~ 106 (507)
-..-||.|+|.+.+.|......|+|..|.. ..+.++|...+..+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm~F 311 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDMTF 311 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCCcc
Confidence 123589999999999999999999998854 56777776655433
No 220
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=87.38 E-value=0.95 Score=33.21 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=45.2
Q ss_pred EEEEECCHHHHHHHHHHh-cCCccCCceeEEe--eecccc-cchhhhccCccceEEEcCCCCCCCHHHHHHHhc
Q 010577 155 GFVQFDNEESAQKAIEKL-NGMLLNDKQVYVG--HFLRKQ-ERDTEINKSKFTNVYVKNLSESTTEEDLQKSFG 224 (507)
Q Consensus 155 a~v~f~~~e~A~~A~~~l-~~~~~~~~~i~v~--~~~~~~-~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~ 224 (507)
|.++|.+.+-|++.++.- +...+++..+.+. +..... ..-........+++.+++||...++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 679999999999998743 2335555554443 222221 111222344567899999999999998887543
No 221
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.68 E-value=0.39 Score=48.16 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=61.1
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
+..++||+|+...+..+-++.++..+|.|.++.... |+|++|..+..+.+|+..++-..++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 445799999999999999999999999999887654 899999999999999999998888888776665
No 222
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=84.83 E-value=12 Score=36.77 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=28.0
Q ss_pred hHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCC
Q 010577 125 HKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175 (507)
Q Consensus 125 ~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~ 175 (507)
+.+|+.-|+-+-.- .+++...|. .+++=+.|.++++|++-++.+...
T Consensus 92 dqELY~nf~y~q~r---~ffhtFegd-dc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 92 DQELYQNFEYRQPR---TFFHTFEGD-DCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred hHHhhhhceeccCc---cceeeeccc-cceeeecccCHHHHHHHHHHHHHH
Confidence 45666666543321 222222222 346678899999999999877543
No 223
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=84.44 E-value=7 Score=37.75 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=5.7
Q ss_pred EeCCHHHHHHHH
Q 010577 249 NFENSDDAARAV 260 (507)
Q Consensus 249 ~f~~~~~a~~a~ 260 (507)
.|+...+....+
T Consensus 329 ~~Ds~K~~lEv~ 340 (654)
T COG5180 329 KFDSSKNLLEVI 340 (654)
T ss_pred cccchhHHHHHH
Confidence 355554444444
No 224
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.13 E-value=0.2 Score=50.15 Aligned_cols=72 Identities=15% Similarity=0.222 Sum_probs=62.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
.-...-+|||+|+-..+..+-++.++..||.|.+++... |+|..|.....+.+|+..|+...++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345677999999999999999999999999998886643 89999999999999999998888888877665
Q ss_pred c
Q 010577 99 Y 99 (507)
Q Consensus 99 ~ 99 (507)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 225
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=82.72 E-value=13 Score=35.42 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=5.6
Q ss_pred ChHHHHhhhhccC
Q 010577 124 DHKALHDTFSAFG 136 (507)
Q Consensus 124 t~~~l~~~f~~~G 136 (507)
+.++|....++.+
T Consensus 48 Dp~qi~~~m~kld 60 (487)
T KOG4672|consen 48 DPDQITSKMEKLD 60 (487)
T ss_pred CHHHHHHHHHhhc
Confidence 3444444444443
No 226
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=82.67 E-value=1.3 Score=36.75 Aligned_cols=108 Identities=14% Similarity=0.015 Sum_probs=72.2
Q ss_pred CCCCHHHHHHHHhcC-CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCCcccccCC-
Q 010577 33 ANVTDSQLYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSG- 110 (507)
Q Consensus 33 ~~~~~~~l~~~f~~~-G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~~~~~~~~- 110 (507)
...+...|.+.+.+. +....+.+..-. .++..+.|.+++++.++++. ..-.+.|..+.+.....+.......
T Consensus 27 ~~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~ 100 (153)
T PF14111_consen 27 KPISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKF 100 (153)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccce
Confidence 346778887777553 332233332211 13788999999999999994 5566788888887666433222221
Q ss_pred ---CCcEEEcCCCcc-cChHHHHhhhhccCceeEEEEeeC
Q 010577 111 ---AGNIFIKNLDKA-IDHKALHDTFSAFGNILSCKVATD 146 (507)
Q Consensus 111 ---~~~v~v~nLp~~-~t~~~l~~~f~~~G~v~~v~~~~~ 146 (507)
.-=|.|.|||.. .+++-++.+.+.+|.+..++....
T Consensus 101 ~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 101 EHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred eccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 122678999988 477788899999999988776544
No 227
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=77.94 E-value=8 Score=36.70 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=6.8
Q ss_pred HHHHHHHHhcCC
Q 010577 37 DSQLYDLFNQMG 48 (507)
Q Consensus 37 ~~~l~~~f~~~G 48 (507)
++-|.++|.+.|
T Consensus 26 W~~IlDvCD~v~ 37 (462)
T KOG2199|consen 26 WSLILDVCDKVG 37 (462)
T ss_pred HHHHHHHHHhhc
Confidence 445666666554
No 228
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=77.50 E-value=4.8 Score=38.14 Aligned_cols=10 Identities=60% Similarity=0.694 Sum_probs=5.2
Q ss_pred CHHHHHHHHH
Q 010577 161 NEESAQKAIE 170 (507)
Q Consensus 161 ~~e~A~~A~~ 170 (507)
.+|+..+|++
T Consensus 165 EeEdiaKAi~ 174 (462)
T KOG2199|consen 165 EEEDIAKAIE 174 (462)
T ss_pred cHHHHHHHHH
Confidence 3445555554
No 229
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.14 E-value=5.7 Score=39.55 Aligned_cols=78 Identities=24% Similarity=0.258 Sum_probs=59.2
Q ss_pred CCcceEEecCCCC-CCHHHHHhcccCC----CCeeEEEEeeCCCC-----------C-----------------------
Q 010577 304 QGANLYIKNLDDS-IDDEKLKQLFSPF----GSITSCKVMRDPSG-----------I----------------------- 344 (507)
Q Consensus 304 ~~~~l~v~~l~~~-~~~~~l~~~f~~~----g~v~~~~~~~~~~g-----------~----------------------- 344 (507)
.+.+|-|-|+.|+ +..++|.-+|+.| |.|.+|.|....-| .
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4557999999985 6788998888655 58999988665321 1
Q ss_pred -------------C-cceEEEEeCCHHHHHHHHHHhCCceec--Ccceeeehh
Q 010577 345 -------------S-RGSGFVAFSTPEEASRALLEMNGKMVV--SKPLYVALA 381 (507)
Q Consensus 345 -------------~-~g~afv~f~~~~~A~~a~~~~~~~~~~--g~~i~v~~~ 381 (507)
. --||.|+|.+.+.|.+.++..+|..+. +..+-+.|-
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 137999999999999999999999886 455555553
No 230
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=76.27 E-value=35 Score=33.67 Aligned_cols=19 Identities=5% Similarity=0.319 Sum_probs=14.7
Q ss_pred eEEEEeCCHHHHHHHHHHH
Q 010577 245 FGFVNFENSDDAARAVEAL 263 (507)
Q Consensus 245 ~afv~f~~~~~a~~a~~~l 263 (507)
+|+|.-++.|..++|++.+
T Consensus 206 H~~Isadt~eki~~Ai~vi 224 (554)
T KOG0119|consen 206 HCLISADTQEKIKKAIAVI 224 (554)
T ss_pred eEEEecchHHHHHHHHHHH
Confidence 6888888888888777644
No 231
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=72.91 E-value=2.8 Score=34.87 Aligned_cols=72 Identities=13% Similarity=0.047 Sum_probs=48.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
.|++|.. +.+...++|.++-+ |.+..|...+.... ...+|..||.|.+.++|.++++. +...+..+.+...+
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 4566666 44555566666666 78888887665332 25678999999999999999886 44445555544443
No 232
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=72.78 E-value=6.4 Score=27.23 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=47.6
Q ss_pred HHHHHHHhcCC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccC
Q 010577 38 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (507)
Q Consensus 38 ~~l~~~f~~~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 102 (507)
++|++-|.++| .|+.|..+...+++.+...-+|+.....+-.. -|+-..+.|.++.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888999999 89999999888878888888899887755444 3445567888888876543
No 233
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=71.07 E-value=72 Score=31.61 Aligned_cols=19 Identities=37% Similarity=0.679 Sum_probs=11.3
Q ss_pred CHHHHHhcccCCCCeeEEEE
Q 010577 318 DDEKLKQLFSPFGSITSCKV 337 (507)
Q Consensus 318 ~~~~l~~~f~~~g~v~~~~~ 337 (507)
.++.+..+|+..| |.++.+
T Consensus 265 ~dp~~nn~~s~ag-ise~~l 283 (569)
T KOG3671|consen 265 NDPPLNNLFSSAG-ISEAQL 283 (569)
T ss_pred CChhhhcccccCC-CCcccc
Confidence 4566777777763 444444
No 234
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=69.21 E-value=9.6 Score=26.54 Aligned_cols=63 Identities=13% Similarity=0.275 Sum_probs=47.1
Q ss_pred HHHHHHHhcCC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCC
Q 010577 38 SQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 38 ~~l~~~f~~~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 103 (507)
++|++-|...| .|.+|.-+....++.+...-||+.+...+..++ ++-..+.+..++|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 57888888888 889999888877778888889998877653333 3445578888888765543
No 235
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=68.71 E-value=2.7 Score=35.14 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=51.5
Q ss_pred cceEEecCCCCCCH-----HHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCc-ceeee
Q 010577 306 ANLYIKNLDDSIDD-----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-PLYVA 379 (507)
Q Consensus 306 ~~l~v~~l~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~-~i~v~ 379 (507)
+++.+.+++..+.. .....+|..|-......+++. .+...|.|.+.+.|.+|...++...|.|+ .+..-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs-----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS-----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh-----hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 34667777765432 334456665555544455443 45678889999999999999999999998 78887
Q ss_pred hhhc
Q 010577 380 LAQR 383 (507)
Q Consensus 380 ~~~~ 383 (507)
|+.+
T Consensus 86 faQ~ 89 (193)
T KOG4019|consen 86 FAQP 89 (193)
T ss_pred EccC
Confidence 8754
No 236
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.44 E-value=7.2 Score=36.86 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=44.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 84 (507)
-..|-|.++|.....+||...|+.|+. ..++|..-.++ .||-.|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 457899999999999999999999964 34444443233 799999999999999984
No 237
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=68.06 E-value=9.6 Score=34.26 Aligned_cols=52 Identities=12% Similarity=0.201 Sum_probs=36.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHH
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQ 76 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~ 76 (507)
....+-|+|+||+.++.-.||+.-+++.+-+ -..+.... ..|-||+-|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG----HFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCC-ceeEeeec----CCcceeEecCCcc
Confidence 3344569999999999999999999988642 23333322 2345899997653
No 238
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=63.57 E-value=5.3 Score=33.06 Aligned_cols=110 Identities=15% Similarity=0.043 Sum_probs=66.1
Q ss_pred cChHHHHhhhhc-cCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecccccchhhhccCc
Q 010577 123 IDHKALHDTFSA-FGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQERDTEINKSK 201 (507)
Q Consensus 123 ~t~~~l~~~f~~-~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~ 201 (507)
.+...|...+.. ++....+.+..- ..++..++|.+.+++.++++ .....+.+..+.+..-..........-...
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~ 103 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHI 103 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceecc
Confidence 344555544433 232223333332 34688999999999999987 455566777666654442222111111111
Q ss_pred cceEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEEEC
Q 010577 202 FTNVYVKNLSES-TTEEDLQKSFGEYGTITSAVVMRD 237 (507)
Q Consensus 202 ~~~l~v~~lp~~-~t~~~l~~~f~~~G~v~~~~~~~~ 237 (507)
.-=+.|.+||.. .+++-++.+.+.+|.+..+.....
T Consensus 104 ~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 104 PVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred chhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 122567899977 677889999999999888765433
No 239
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.22 E-value=2.8 Score=37.32 Aligned_cols=82 Identities=15% Similarity=0.285 Sum_probs=51.4
Q ss_pred cCCcceEEecCCCC------------CCHHHHHhcccCCCCeeEEEEeeCC------CCCC-----cce---------EE
Q 010577 303 FQGANLYIKNLDDS------------IDDEKLKQLFSPFGSITSCKVMRDP------SGIS-----RGS---------GF 350 (507)
Q Consensus 303 ~~~~~l~v~~l~~~------------~~~~~l~~~f~~~g~v~~~~~~~~~------~g~~-----~g~---------af 350 (507)
....||++.+||-. -+++.|+..|+.||.|..|+|.... +|+. .|| ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34457888888832 3568899999999999998875442 2332 223 34
Q ss_pred EEeCCHHHHHHHHHHhCCceec--------Ccceeeehhhch
Q 010577 351 VAFSTPEEASRALLEMNGKMVV--------SKPLYVALAQRK 384 (507)
Q Consensus 351 v~f~~~~~A~~a~~~~~~~~~~--------g~~i~v~~~~~~ 384 (507)
|+|.....-..|+..|.|..+. -..++|.|.+++
T Consensus 227 vqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 5555444555566666665442 246777776543
No 240
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=59.85 E-value=24 Score=25.77 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=42.4
Q ss_pred eEEecCCCCCCHHHHHhcccC-CC-CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 010577 308 LYIKNLDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (507)
Q Consensus 308 l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~ 366 (507)
-|.-..+...+..+|++.++. || .|.+|....-..+ .--|+|.+..-++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHhh
Confidence 556667788999999998876 45 7888887766543 236999999988888765443
No 241
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.63 E-value=9.7 Score=29.86 Aligned_cols=56 Identities=13% Similarity=0.242 Sum_probs=30.4
Q ss_pred eEEEcCCCCCC---------CHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCH-HHHHHHHH
Q 010577 25 SLYVGDLEANV---------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA-QEAARALE 83 (507)
Q Consensus 25 ~l~V~nLp~~~---------~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~-~~A~~A~~ 83 (507)
+++|-|++.+. +.++|++.|+.|.++ .++.+.+.. ...|++.|.|.+. ..-..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 46777776543 457899999999876 466666533 5668999999665 33444444
No 242
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=59.62 E-value=14 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=17.0
Q ss_pred HHHHHhcccCCCCeeEEEEeeC
Q 010577 319 DEKLKQLFSPFGSITSCKVMRD 340 (507)
Q Consensus 319 ~~~l~~~f~~~g~v~~~~~~~~ 340 (507)
..+||++|+..|.|.-+.+-.-
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEccc
Confidence 3689999999998877665433
No 243
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=59.56 E-value=26 Score=25.09 Aligned_cols=58 Identities=14% Similarity=0.244 Sum_probs=42.4
Q ss_pred ceEEecCCCCCCHHHHHhcccC-CC-CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~ 366 (507)
+-|+-.++.+.+..+|+..++. |+ .|.+|....-..+ .--|||++..-++|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHhh
Confidence 3566677889999999988876 45 6778877666533 236999999888887765443
No 244
>PHA03247 large tegument protein UL36; Provisional
Probab=58.51 E-value=1.2e+02 Score=37.07 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=7.1
Q ss_pred EEeCCHHHHHHHHH
Q 010577 70 VNFSNAQEAARALE 83 (507)
Q Consensus 70 V~f~~~~~A~~A~~ 83 (507)
|.|...-+-..||.
T Consensus 1958 vCyraVgdKLaa~L 1971 (3151)
T PHA03247 1958 LCFPAVTDKLGALL 1971 (3151)
T ss_pred eehHhHHHHHHHHH
Confidence 55555554444444
No 245
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=55.52 E-value=69 Score=31.33 Aligned_cols=9 Identities=22% Similarity=0.349 Sum_probs=4.5
Q ss_pred CEEEEEEEe
Q 010577 49 QVVSVRVCR 57 (507)
Q Consensus 49 ~v~~i~~~~ 57 (507)
.+.+|+|+.
T Consensus 49 nlEsi~vv~ 57 (654)
T COG5180 49 NLESIDVVE 57 (654)
T ss_pred eeeeeeeee
Confidence 445555544
No 246
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=53.76 E-value=12 Score=33.64 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=36.3
Q ss_pred cceEEecCCCCCCHHHHHhcccCCC-CeeEEEEeeCCCCCCcceEEEEeCCHH
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPE 357 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~g~~~g~afv~f~~~~ 357 (507)
+-|+++||+.++-..||+..+.+.+ ...++.+-- ++|-||+.|-+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCcc
Confidence 4599999999999999999998776 334554432 4667999998754
No 247
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.30 E-value=1.3e+02 Score=33.05 Aligned_cols=6 Identities=0% Similarity=0.091 Sum_probs=2.3
Q ss_pred EeCCHH
Q 010577 352 AFSTPE 357 (507)
Q Consensus 352 ~f~~~~ 357 (507)
+|.+.-
T Consensus 670 ~yanll 675 (1049)
T KOG0307|consen 670 EYANLL 675 (1049)
T ss_pred HHHHHH
Confidence 344433
No 248
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.23 E-value=1.2e+02 Score=31.82 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=5.2
Q ss_pred CCHHHHHHHhc
Q 010577 214 TTEEDLQKSFG 224 (507)
Q Consensus 214 ~t~~~l~~~f~ 224 (507)
.++++|..++.
T Consensus 178 Ls~~eL~~~L~ 188 (624)
T PRK14959 178 LSEAGLEAHLT 188 (624)
T ss_pred CCHHHHHHHHH
Confidence 34455554443
No 249
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=51.60 E-value=2.4 Score=41.81 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=55.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
.-..++|+++|+++.++.++|..+|+.+--+..+.+..+....+-..+.+|.|+-.-....|+..||+..+...
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 34567899999999999999999999986666666554444444555788999888777788888877655443
No 250
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=51.34 E-value=16 Score=34.68 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=47.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEEe-cCCC-CCcccEEEEEeCCHHHHHHHHHHcCCCCC
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCR-DLST-RRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G-~v~~i~~~~-~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 90 (507)
..-..|.|++||...++++|.+-+..+- .|....+.. +... ..-.+.|||.|...++.......+++..|
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4457899999999999999999888763 222222221 1001 12246799999999998888887776544
No 251
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=51.04 E-value=1.3e+02 Score=24.11 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=48.2
Q ss_pred CCCceEEEcCCCCC---CCHHHHHHHHhcCC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 21 FGTTSLYVGDLEAN---VTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 21 ~~~~~l~V~nLp~~---~~~~~l~~~f~~~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
.++..|.|+..... .+-..|.+.+..-| .++++....+ ...|.|.+.++-.+|.+-|....-++-.+.
T Consensus 33 gedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VA 104 (127)
T PRK10629 33 QQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIA 104 (127)
T ss_pred CCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEE
Confidence 35667778776444 56678889998887 6677766433 478999999999999998875543333333
Q ss_pred e
Q 010577 97 V 97 (507)
Q Consensus 97 v 97 (507)
+
T Consensus 105 l 105 (127)
T PRK10629 105 Q 105 (127)
T ss_pred E
Confidence 3
No 252
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=50.59 E-value=62 Score=23.66 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=42.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 010577 26 LYVGDLEANVTDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (507)
Q Consensus 26 l~V~nLp~~~~~~~l~~~f~~-~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 85 (507)
-|+-.++.+++-.+|++.++. || .|.+|....-... ..=|||.+...++|...-..+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHhh
Confidence 455556789999999999976 56 7888887765432 225999999999998876654
No 253
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=50.44 E-value=68 Score=23.01 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=42.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 010577 25 SLYVGDLEANVTDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (507)
Q Consensus 25 ~l~V~nLp~~~~~~~l~~~f~~-~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 85 (507)
.-|+-.++.+++-.+|++.++. || .|.+|....-... ..=|||.+...++|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~---~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG---EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---ceEEEEEECCCCcHHHHHHhh
Confidence 3566667889999999998876 45 7778777665422 225999999998888776653
No 254
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=48.34 E-value=3.1e+02 Score=28.13 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=8.5
Q ss_pred HHHHHHhcccCCeEEEEEEEC
Q 010577 217 EDLQKSFGEYGTITSAVVMRD 237 (507)
Q Consensus 217 ~~l~~~f~~~G~v~~~~~~~~ 237 (507)
+.|+.+-..-|. +|.++++
T Consensus 250 E~IKklq~etG~--KIQfkpD 268 (600)
T KOG1676|consen 250 EMIKKLQNETGA--KIQFKPD 268 (600)
T ss_pred hHHHHHhhccCc--eeEeecC
Confidence 445555444442 3444443
No 255
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.69 E-value=1e+02 Score=31.45 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=7.7
Q ss_pred HHHHHHHHHhcCCccC
Q 010577 163 ESAQKAIEKLNGMLLN 178 (507)
Q Consensus 163 e~A~~A~~~l~~~~~~ 178 (507)
|++..+...|++..++
T Consensus 28 e~~~E~~d~LNdEtfg 43 (728)
T KOG4592|consen 28 EEAHETMDRLNDETFG 43 (728)
T ss_pred HHHHHHhhhhcccccc
Confidence 4455555555444443
No 256
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.27 E-value=5.7 Score=38.02 Aligned_cols=78 Identities=6% Similarity=-0.051 Sum_probs=62.9
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhchH
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKE 385 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~ 385 (507)
..++..++...+++++.-+|..||.|.-+.+-+.. .|...-.+||+-.+ .+|..+|..+.-..++|..+++.++...-
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 45678889999999999999999999988886665 44445578888777 77888888888888889999998886543
No 257
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=42.55 E-value=12 Score=33.35 Aligned_cols=69 Identities=26% Similarity=0.456 Sum_probs=45.1
Q ss_pred CCCCcEEEcCCCcc------------cChHHHHhhhhccCceeEEEEeeC------CCCCceeE--------------EE
Q 010577 109 SGAGNIFIKNLDKA------------IDHKALHDTFSAFGNILSCKVATD------LNGQSKGY--------------GF 156 (507)
Q Consensus 109 ~~~~~v~v~nLp~~------------~t~~~l~~~f~~~G~v~~v~~~~~------~~~~~~g~--------------a~ 156 (507)
+-.-+|++.+||-. -+++.|+..|+.||.|..|.|..- .+|...|. ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34457888888733 367789999999999987776543 13443332 34
Q ss_pred EEECCHHHHHHHHHHhcCCcc
Q 010577 157 VQFDNEESAQKAIEKLNGMLL 177 (507)
Q Consensus 157 v~f~~~e~A~~A~~~l~~~~~ 177 (507)
|+|.....-..|+..|.|..+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 555555556667777776654
No 258
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=42.25 E-value=23 Score=38.81 Aligned_cols=6 Identities=83% Similarity=2.007 Sum_probs=2.4
Q ss_pred CCCCCC
Q 010577 436 PPQPGF 441 (507)
Q Consensus 436 pp~~~~ 441 (507)
||+|+|
T Consensus 13 ppppg~ 18 (2365)
T COG5178 13 PPPPGF 18 (2365)
T ss_pred ccCCCC
Confidence 333444
No 259
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.83 E-value=45 Score=31.69 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=37.4
Q ss_pred EEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhc
Q 010577 68 GYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134 (507)
Q Consensus 68 afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~ 134 (507)
|||.|++.++|..|.+.+.... .+.++++.+.+. +.|.=.||.....+..++..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP--------~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP--------DDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc--------ccccccccCCChHHHHHHHHHHH
Confidence 7999999999999999755433 344555544433 34556677666666666655443
No 260
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=41.41 E-value=27 Score=30.70 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=31.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEE
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVR 54 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~ 54 (507)
.......+||+-|||...+++.|.++.+.+|-|..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4566788999999999999999999999998655443
No 261
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=40.93 E-value=12 Score=35.53 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=54.4
Q ss_pred CCCCceEEEcCCCCCCCHH--------HHHHHHhc--CCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 010577 20 QFGTTSLYVGDLEANVTDS--------QLYDLFNQ--MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~--------~l~~~f~~--~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 84 (507)
+-.-|.+|+.+.......+ ++...|.. .++...|...++....++.|..|++|...+.++++...
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 4455778888888776655 89999998 67888899989887888999999999999999998864
No 262
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=40.81 E-value=21 Score=30.03 Aligned_cols=74 Identities=26% Similarity=0.410 Sum_probs=50.7
Q ss_pred ceEEEcCCCCCCC-HH----HHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc-ceEe
Q 010577 24 TSLYVGDLEANVT-DS----QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK-PIRV 97 (507)
Q Consensus 24 ~~l~V~nLp~~~~-~~----~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~~~v 97 (507)
+++.+-+++..+- +. ....+|..|.+..-..+++. .+...|.|.+.+.|..|...++...|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4566666665531 11 23456676665554444443 23567999999999999999999999998 7887
Q ss_pred ecccCC
Q 010577 98 MYSHRD 103 (507)
Q Consensus 98 ~~~~~~ 103 (507)
.++...
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 776644
No 263
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.10 E-value=1.2e+02 Score=29.18 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=44.1
Q ss_pred CCCcEEEcCCCcccChHHHHhhhhccCce-eEEEEeeCCCCCceeEEEEEECCHHHHHHHHHH
Q 010577 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNI-LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEK 171 (507)
Q Consensus 110 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v-~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~ 171 (507)
-...|-|.+.|.....+||...|..|+.- .+|..+.+ ..|+--|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 34667899999999999999999999743 34444443 3688999999999999873
No 264
>PF14893 PNMA: PNMA
Probab=40.09 E-value=18 Score=34.24 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=41.7
Q ss_pred CcchhccCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhc----CCCE--EEEEEEecCCCCCcccEEEEEeCC
Q 010577 1 MAQVQAQGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQ----MGQV--VSVRVCRDLSTRRSLGYGYVNFSN 74 (507)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~----~G~v--~~i~~~~~~~~~~~~g~afV~f~~ 74 (507)
||+++-+-||.+=+ -...+.|.|.+||.++++.+|.+.+.. .|.. ..-.+.++ .+...|+|+|..
T Consensus 1 m~~~lL~dWCr~m~-----~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~----~~~~aalve~~e 71 (331)
T PF14893_consen 1 MALALLEDWCRGMG-----VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE----ENAKAALVEFAE 71 (331)
T ss_pred CchHHHHHHHHhcC-----cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh----cccceeeeeccc
Confidence 66666666666632 335688999999999999999887653 4532 21111111 122368888866
Q ss_pred H
Q 010577 75 A 75 (507)
Q Consensus 75 ~ 75 (507)
.
T Consensus 72 ~ 72 (331)
T PF14893_consen 72 D 72 (331)
T ss_pred c
Confidence 5
No 265
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=40.00 E-value=37 Score=28.54 Aligned_cols=69 Identities=23% Similarity=0.106 Sum_probs=43.3
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCC--CCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSG--ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g--~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
++|.. +.+...++|.++-+ |.+..|.+.+...+ .-+|-.||+|.+.+.|.+.++ .+.....-..|..++
T Consensus 113 ~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 113 TVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKGAETELKRSG 183 (205)
T ss_pred hhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhccchHHHHHH
Confidence 45555 22333344444444 78888888776555 567889999999999988774 333444444454444
No 266
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.68 E-value=1.3e+02 Score=25.80 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=3.7
Q ss_pred CCCCCCCCC
Q 010577 440 GFGYQQQLV 448 (507)
Q Consensus 440 ~~~~~~~~~ 448 (507)
.|+.++.++
T Consensus 62 MWG~~q~mm 70 (189)
T PF07777_consen 62 MWGPQQPMM 70 (189)
T ss_pred ccCCCcccc
Confidence 344444333
No 267
>PRK11901 hypothetical protein; Reviewed
Probab=38.19 E-value=63 Score=30.28 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=36.1
Q ss_pred CCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEE--eCCHHHHHHHHHHhCCce
Q 010577 315 DSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVA--FSTPEEASRALLEMNGKM 370 (507)
Q Consensus 315 ~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~--f~~~~~A~~a~~~~~~~~ 370 (507)
....++.|..|...++ +..+++.... +|+. .|..|. |.+.++|..|+..|--..
T Consensus 252 Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 252 SASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred cCCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3455788888887774 4555555544 4443 355443 999999999999886433
No 268
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=37.68 E-value=97 Score=24.30 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=23.8
Q ss_pred cChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHH
Q 010577 123 IDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEES 164 (507)
Q Consensus 123 ~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~ 164 (507)
.+.++|.+.|+.|..+. ++.+.+.. .+.|++.|+|.+.-.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChH
Confidence 35678999999998874 55555433 568899999987643
No 269
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=37.52 E-value=6.4 Score=39.00 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=49.4
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV 371 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~ 371 (507)
..++|+++|+...++.++|..+|+.+-.+..+.+.... ..+-.-+..|+|+---....|+.+||+..+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 45679999999999999999999998777776665443 222334678888866666666666666544
No 270
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=37.34 E-value=1.1e+02 Score=20.30 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=40.4
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCH----HHHHHHHHH
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTP----EEASRALLE 365 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~----~~A~~a~~~ 365 (507)
++.|.|+.-.-....|++.+...-.|.++.+... .+.+-|+|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4678888888888999999999988999988665 34788888754 444455543
No 271
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.66 E-value=83 Score=21.37 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.0
Q ss_pred hHHHHhhhhccCceeEEEEeeC
Q 010577 125 HKALHDTFSAFGNILSCKVATD 146 (507)
Q Consensus 125 ~~~l~~~f~~~G~v~~v~~~~~ 146 (507)
.++|+++|+..|+|.-+.+..-
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEccc
Confidence 4689999999999976655444
No 272
>PRK10905 cell division protein DamX; Validated
Probab=35.35 E-value=63 Score=30.15 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHhcCCCEEEEEEEecCCCCC-cccEEEEEeCCHHHHHHHHHHcC
Q 010577 34 NVTDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNFSNAQEAARALEMLN 86 (507)
Q Consensus 34 ~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~ 86 (507)
-.+++.|++|.+++| +....++....+|+ ....-+=.|.+.++|++|+..|-
T Consensus 255 ~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 255 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred cCCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCC
Confidence 456788999988885 34555555555565 33333446899999999999985
No 273
>PRK11901 hypothetical protein; Reviewed
Probab=35.00 E-value=1.5e+02 Score=27.94 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=42.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCc-ccEEEEEeCCHHHHHHHHHHcCC
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRS-LGYGYVNFSNAQEAARALEMLNF 87 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~ 87 (507)
....-+|=|..+ -+++.|..|.++++ +..+++++....|+. ...-|=.|.+.++|+.|+..|-.
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 344445555543 45888999998885 456777776555553 12222358999999999999864
No 274
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.49 E-value=2.1e+02 Score=27.12 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=9.2
Q ss_pred CeeEEEEeeCCCCC
Q 010577 331 SITSCKVMRDPSGI 344 (507)
Q Consensus 331 ~v~~~~~~~~~~g~ 344 (507)
.|..|+.+..++|+
T Consensus 344 dICav~alhsKdGr 357 (488)
T KOG3895|consen 344 DICAVKALHSKDGR 357 (488)
T ss_pred ceEEeeeeecccch
Confidence 56667777666664
No 275
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=34.46 E-value=1e+02 Score=30.82 Aligned_cols=61 Identities=18% Similarity=0.328 Sum_probs=39.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcC---CCEEEEEEEecCCCCCcccEEE-EEeCCHHHHHHHHHHc
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQM---GQVVSVRVCRDLSTRRSLGYGY-VNFSNAQEAARALEML 85 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~---G~v~~i~~~~~~~~~~~~g~af-V~f~~~~~A~~A~~~l 85 (507)
.++|.|+.||+.++-+++.+.+... +++..|.=++|.++.. +..| |++.....+...++.|
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~--~vrivI~lk~~~~~~~~~~~L 289 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDRE--GIRFVIELKRGAMAEVVLNGL 289 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCC--ceEEEEEECCCccHHHHHHHH
Confidence 4689999999999999988866532 4444454455544332 4555 6677666666655554
No 276
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=32.27 E-value=1.5e+02 Score=23.02 Aligned_cols=46 Identities=15% Similarity=0.368 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHhcC-----CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 010577 34 NVTDSQLYDLFNQM-----GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAAR 80 (507)
Q Consensus 34 ~~~~~~l~~~f~~~-----G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~ 80 (507)
.++.+||++.+++. ..|.-..+....-.|++.|||.| |++.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 46788898877653 23333344445556789899877 566665554
No 277
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=31.89 E-value=2.2e+02 Score=22.77 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=45.9
Q ss_pred ceEEecCCCC---CCHHHHHhcccCCC-CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 307 NLYIKNLDDS---IDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 307 ~l~v~~l~~~---~~~~~l~~~f~~~g-~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
.|.|+..... .+.+.+.+.+..-| .++++....+ ...|.|++.++-.+|.+.|....=++-.|.+..+.
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~-------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND-------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC-------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 4666655333 46677888887776 5666665443 68999999999999988886544344455555543
No 278
>PRK10905 cell division protein DamX; Validated
Probab=31.59 E-value=1.2e+02 Score=28.48 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=34.4
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeC-CCCCCcceEEE--EeCCHHHHHHHHHHhCC
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFV--AFSTPEEASRALLEMNG 368 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~g~~~g~afv--~f~~~~~A~~a~~~~~~ 368 (507)
+|-|..+ .+++.|+++..++|. ....+... .+|+. .|..+ .|.+.++|++|++.|-.
T Consensus 249 TLQL~A~---Ss~~~l~~fakKlgL-~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 249 TLQLSSS---SNYDNLNGWAKKENL-KNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred EEEEEec---CCHHHHHHHHHHcCC-CceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 4555544 456777777777653 33333333 24442 24333 39999999999998864
No 279
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=30.95 E-value=1.4e+02 Score=29.71 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=42.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhc---CCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQ---MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~---~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 85 (507)
.++|.|+.||+.++-++|.+.+.. -|.|. |.-++|.++. . -.-.|.+....++...++.|
T Consensus 220 ~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~~-~-v~i~I~Lk~~~~~~~vl~~L 282 (479)
T PRK09630 220 DKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFSTD-L-PHIEIKLPKGIYAKDLLRPL 282 (479)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCCC-C-ceEEEEECCCCCHHHHHHHH
Confidence 468999999999999998886543 36664 5556665433 2 22347788888888888876
No 280
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=30.19 E-value=18 Score=27.65 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=38.1
Q ss_pred CCceEEEcCCC---------CCCCHHHHHHHHhc---CCCEEEEEEEecCCCCCcccEEEEEeCCH
Q 010577 22 GTTSLYVGDLE---------ANVTDSQLYDLFNQ---MGQVVSVRVCRDLSTRRSLGYGYVNFSNA 75 (507)
Q Consensus 22 ~~~~l~V~nLp---------~~~~~~~l~~~f~~---~G~v~~i~~~~~~~~~~~~g~afV~f~~~ 75 (507)
....|+|.+-| +.++..+++++|+. |-.|+.-.+.+|.....+...||..|...
T Consensus 64 ~~~sV~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 64 TPASVRIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CcccEEEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 34455555544 46899999999985 34556666677766667778899999765
No 281
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=29.64 E-value=1.3e+02 Score=24.53 Aligned_cols=54 Identities=11% Similarity=0.309 Sum_probs=38.1
Q ss_pred eEEecCCCCCCHHHHHhcccC-CC-CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHH
Q 010577 308 LYIKNLDDSIDDEKLKQLFSP-FG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 363 (507)
Q Consensus 308 l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~ 363 (507)
-|+-.++...+..+|++.++. |+ .|..|..+....|. --|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~--KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL--KKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc--eEEEEEECCCCcHHHHH
Confidence 555566788899999988876 54 67788776665542 25999998767665543
No 282
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=29.45 E-value=1.5e+02 Score=21.98 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=33.6
Q ss_pred HHHHHhcccCCC-CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 010577 319 DEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (507)
Q Consensus 319 ~~~l~~~f~~~g-~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~ 367 (507)
.+.++++++.+| .++++.+...+. -....+++.|.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~y---D~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEY---DFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCC---CEEEEEEcCCHHHHHHHHHHHH
Confidence 356677777775 788888876653 3478899999998888775553
No 283
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.82 E-value=45 Score=19.75 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHhcCCC
Q 010577 33 ANVTDSQLYDLFNQMGQ 49 (507)
Q Consensus 33 ~~~~~~~l~~~f~~~G~ 49 (507)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999988743
No 284
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.24 E-value=81 Score=29.98 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=23.9
Q ss_pred EEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccc
Q 010577 246 GFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKK 281 (507)
Q Consensus 246 afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~ 281 (507)
|||+|.+..+|..+.+.+....- +.+.+..+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc
Confidence 69999999999999986554432 44556555433
No 285
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=28.09 E-value=2.1e+02 Score=20.30 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 010577 38 SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (507)
Q Consensus 38 ~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 86 (507)
.+|++.+..+| +....+.-. . .-++.|+.+.+.+++.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGs-G---~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGS-G---GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETT-S---SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCC-C---CCCeEEEEECCHHHHHHHHHHHH
Confidence 45778888888 445555322 1 12378888889999999888764
No 286
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=27.32 E-value=1.9e+02 Score=21.38 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCC--HHHHHHHHHHcCCC
Q 010577 39 QLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN--AQEAARALEMLNFT 88 (507)
Q Consensus 39 ~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~--~~~A~~A~~~l~~~ 88 (507)
.|++|+..++.-.+|..+.....+...+.++|.|.. .++..+.++.|+..
T Consensus 23 al~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 23 ALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp HCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred HHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 578888888866667766666677778889977744 45556677777643
No 287
>COG3266 DamX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.27 E-value=2.7e+02 Score=25.36 Aligned_cols=61 Identities=15% Similarity=0.160 Sum_probs=41.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEE---EeCCHHHHHHHHHHcC
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYV---NFSNAQEAARALEMLN 86 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV---~f~~~~~A~~A~~~l~ 86 (507)
+..+-+|-|.. .-++++|..|.++.+ ...+.++....+|+. +-.| .|.+.++|.+|++.|-
T Consensus 208 p~~~yTLQl~a---~~s~~nv~~fa~k~~-l~~~~vy~t~rnG~p--WYvv~~G~YatrqeA~~AvstLP 271 (292)
T COG3266 208 PSSHYTLQLSA---SGSYDNVNGFAKKQN-LKGYVVYETTRNGKP--WYVVVYGNYATRQEAKAAVSTLP 271 (292)
T ss_pred CCCceEEEEec---ccchHHHHHHHHhcC-CCceEEeEeecCCce--eEEEEecCcccHHHHHHHHhhCc
Confidence 44455555544 456788888888874 345667666566653 3333 4789999999999875
No 288
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=27.21 E-value=90 Score=23.24 Aligned_cols=22 Identities=9% Similarity=0.280 Sum_probs=17.4
Q ss_pred cccEEEEEeCCHHHHHHHHHHc
Q 010577 64 SLGYGYVNFSNAQEAARALEML 85 (507)
Q Consensus 64 ~~g~afV~f~~~~~A~~A~~~l 85 (507)
.--|++++|.+.+.+..|...+
T Consensus 65 ~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 65 EVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEEcCchhHHHHHHHHh
Confidence 3358899999999888887764
No 289
>KOG3546 consensus Collagens (type XV) [Extracellular structures]
Probab=27.11 E-value=3.6e+02 Score=27.94 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=18.5
Q ss_pred EEEEEECCHHHHHHHHHHhcCCccCCceeEE
Q 010577 154 YGFVQFDNEESAQKAIEKLNGMLLNDKQVYV 184 (507)
Q Consensus 154 ~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v 184 (507)
.||-+-+-..+|.+.++...+..+.-+...+
T Consensus 239 ~a~g~ssgl~~a~e~l~~~t~~~~~p~~~~~ 269 (1167)
T KOG3546|consen 239 DAFGDSSGLGDARELLREETGAALKPRLPAP 269 (1167)
T ss_pred ccccccccchhHHHHHHHhhhhccCccCCCC
Confidence 4555556666777777766665555544333
No 290
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=26.60 E-value=1.9e+02 Score=21.02 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=25.2
Q ss_pred CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 010577 331 SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371 (507)
Q Consensus 331 ~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~ 371 (507)
.|.++-...+ .+||-|||=.+..+..+|++.+.+...
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhcccceee
Confidence 4555544444 688999999999999999988876444
No 291
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=26.31 E-value=2e+02 Score=30.31 Aligned_cols=94 Identities=10% Similarity=0.105 Sum_probs=57.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhc---CCCEEEEEEEecCCCCCcccEE-EEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQ---MGQVVSVRVCRDLSTRRSLGYG-YVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~---~G~v~~i~~~~~~~~~~~~g~a-fV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
.++|.|+-||+.++-+.|.+.+.. -|.+. |.-++|..+ . +.. .|++....++...++.|-.. ..+...
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~-~--~v~i~i~l~~~~~~~~~~~~Lyk~----t~lq~s 291 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTA-E--NVEIEIKLPRGVYASEVIEALYAY----TDCEVS 291 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCC-C--cEEEEEEECCCCCHHHHHHHHHHh----cCceeE
Confidence 468999999999999998886543 35655 655666543 2 233 46777777777777766322 122222
Q ss_pred cccCCcccccCCCCcEEEcCCCcccChHHHHhhhh
Q 010577 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFS 133 (507)
Q Consensus 99 ~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~ 133 (507)
++.+. .+.+.+.|...+-.+|...|-
T Consensus 292 ~~~n~---------~~i~~~~p~~~~l~~il~~~~ 317 (635)
T PRK09631 292 ISVNL---------LVIKDRYPVIYTVTDIIKFHA 317 (635)
T ss_pred eeeeE---------EEEECCcCcCCCHHHHHHHHH
Confidence 22211 344556666666666655543
No 292
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.81 E-value=13 Score=35.84 Aligned_cols=78 Identities=6% Similarity=-0.136 Sum_probs=59.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
+.+-++..||...+++++.-+|..||.|.-+...+....+-....+||.-.+ ++|.-||..+....+.|..+++.++.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 4566788999999999999999999999888776665555566677776554 45778888877777777777776654
No 293
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=25.50 E-value=1.6e+02 Score=22.04 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=27.1
Q ss_pred HHHHHHhcCCC-EE----EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 010577 39 QLYDLFNQMGQ-VV----SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (507)
Q Consensus 39 ~l~~~f~~~G~-v~----~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 84 (507)
.+...|.+||. .+ ++....+ ...+.....|+|.+.+.|..|.+.
T Consensus 24 ~~~~a~~~~Ggr~LvRGG~v~~lEG--~w~ptr~vviEFps~~~ar~~y~S 72 (96)
T COG5470 24 KAKPAIEKFGGRYLVRGGEVETLEG--EWRPTRNVVIEFPSLEAARDCYNS 72 (96)
T ss_pred HhHHHHHHhCCeeEeeCCCeeeccC--CCCcccEEEEEcCCHHHHHHHhcC
Confidence 35667777762 11 1223332 133345799999999999888763
No 294
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=25.06 E-value=2.6e+02 Score=19.96 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=43.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcC-------CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC
Q 010577 25 SLYVGDLEANVTDSQLYDLFNQM-------GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (507)
Q Consensus 25 ~l~V~nLp~~~~~~~l~~~f~~~-------G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 90 (507)
-|..++||..++.++|.+.-.+. ..|.-++..-+...+ +-||+.+=.|++...++.++ .|.++
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 36788999889999988776543 244444444443333 45999999999988888876 35543
No 295
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=24.44 E-value=1.1e+02 Score=25.95 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=38.7
Q ss_pred CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCCcccccCCCCcEEEc
Q 010577 49 QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRDPSLRKSGAGNIFIK 117 (507)
Q Consensus 49 ~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~~~~~~~~~~~v~v~ 117 (507)
.+.-|.+++++ +-|.+.++|.+-+++ +++.+....+.|.+.... ..+.+.+|+|+
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~-e~KlWreteI~I~~g~p~---VNE~TkkIYIC 90 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEE-EGKLWRETEIKIQSGKPS---VNEQTKKIYIC 90 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHH-hcchheeeeEEEecCCcc---cccccceEEEc
Confidence 34455566653 679999999999996 888899999999876644 23344455554
No 296
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=24.33 E-value=41 Score=32.25 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=46.9
Q ss_pred ceEEecCCCCCCHH--------HHHhcccC--CCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHH
Q 010577 307 NLYIKNLDDSIDDE--------KLKQLFSP--FGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALL 364 (507)
Q Consensus 307 ~l~v~~l~~~~~~~--------~l~~~f~~--~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~ 364 (507)
.+|+.+.+...+.+ ++...|.. ++.+..++..++. ...++|..|++|...+.|.+...
T Consensus 176 ~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 176 DVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 46777777655544 99999998 6788889888887 66788899999999999999874
No 297
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=23.84 E-value=1.8e+02 Score=29.64 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=35.5
Q ss_pred HHHHHhccc----CCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 010577 319 DEKLKQLFS----PFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (507)
Q Consensus 319 ~~~l~~~f~----~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~ 367 (507)
.-+|..+|. .+|.|+++.+.-.+.-..+...++.|.+.++|.+++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 345666664 6788998877655543345577899999999999987753
No 298
>PF07872 DUF1659: Protein of unknown function (DUF1659); InterPro: IPR012454 This family consists of hypothetical bacterial proteins of unknown function
Probab=23.27 E-value=97 Score=19.66 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=27.2
Q ss_pred CcceEeecccCCcccccCCCCcEEEcCCCcccChHHHHhh
Q 010577 92 GKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDT 131 (507)
Q Consensus 92 g~~~~v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~ 131 (507)
..+|+|.+..--+...+...++..++|+-.+.++++|++.
T Consensus 5 ~s~L~l~~~~G~d~~Gkpi~k~ks~~nvk~~Atdedl~~V 44 (47)
T PF07872_consen 5 SSSLRLKYQTGVDENGKPIFKTKSFSNVKPDATDEDLYDV 44 (47)
T ss_pred ceEEEEEEEcccCCCCCEEEEeeehhhcCCCCCHHHHHHH
Confidence 3455665555444444445566778899999999999875
No 299
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=22.92 E-value=1.9e+02 Score=29.06 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=38.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhc---CCCEEEEEEEecCCCCCcccEEE-EEeCCHHHHHHHHHHc
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQ---MGQVVSVRVCRDLSTRRSLGYGY-VNFSNAQEAARALEML 85 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~---~G~v~~i~~~~~~~~~~~~g~af-V~f~~~~~A~~A~~~l 85 (507)
++|.|+.||+.+.-+++.+.+.. -+.|..|.-.+|....+ .+..| |+++....++..++.|
T Consensus 233 ~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~~~-~~vrivI~lk~~~~~~~~~~~L 297 (445)
T smart00434 233 NTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDR-TGVRIVIELKRGAMAEVVLNGL 297 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccCCC-CceEEEEEECCCcCHHHHHHHH
Confidence 68999999999999998887654 24555555444433122 23444 6666666666555554
No 300
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=21.85 E-value=2e+02 Score=20.00 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=37.0
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCC
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST 355 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~ 355 (507)
.++.|.++.-.-....+...+.....|.++.+... .+.++|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----cCeEEEEEcC
Confidence 35788888877788899999999988999988766 4469999998
No 301
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=21.64 E-value=2.9e+02 Score=19.18 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=33.2
Q ss_pred CCHHHHHHHHhcCC-CEEEEEEEecCCCCCcccEEEEEeCC---HHHHHHHHHHcCC
Q 010577 35 VTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSN---AQEAARALEMLNF 87 (507)
Q Consensus 35 ~~~~~l~~~f~~~G-~v~~i~~~~~~~~~~~~g~afV~f~~---~~~A~~A~~~l~~ 87 (507)
-...+|.+.|+.+| .+..|.-.... .......-||++.. .....++++.|..
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Srp~~-~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESRPSR-KGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEeeecC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34778999999987 77777544332 22333456688864 5666677776643
No 302
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=20.94 E-value=1.5e+02 Score=20.86 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=28.6
Q ss_pred HHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC
Q 010577 43 LFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (507)
Q Consensus 43 ~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 90 (507)
-+++||.|.-+.-.. .| .|.|.+.+++...++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk~--------kY-vvlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKM--------KY-VVLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCc--------cE-EEEEECHHHHHHHHHHHhcCCC
Confidence 567899987663322 14 4778899999999999887655
No 303
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=20.83 E-value=81 Score=35.85 Aligned_cols=108 Identities=20% Similarity=0.176 Sum_probs=0.0
Q ss_pred HhccCcccccCCCCCCCCCCC--------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 010577 395 FAQMRPVAMASTVAPRMPMYP--------------------PGGPGIGQQIFYGQGPPAMIPPQPGFGYQQQLVPGMRPG 454 (507)
Q Consensus 395 ~~~~~~~~~~~~~~p~~~~~~--------------------p~~~~~~~~~~~~~~~~~~~pp~~~~~~~~~~~p~~~p~ 454 (507)
.+.+.+....++.++++|+.. |.+.++.+.+.++.+-...+-|+++....-++.+-|.|.
T Consensus 1993 qqa~g~~~~m~p~g~~mp~~qs~q~~~~~~~l~p~~~~q~~ps~~~~~q~m~~~~q~~s~q~~~~~s~~~~~~~~~m~py 2072 (2220)
T KOG3598|consen 1993 QQAMGNTSSMPPSGPPMPMGQSMQSAGATQQLQPMQKHQMGPSMSGMNQNMGGMNQSMSHQAPPPYSSTNEMNRPLMNPY 2072 (2220)
T ss_pred hhccCCCCCcCCCCCCCCcccccccCCCceecCchHhhccCCcccccccchhhhhccccCCCCCCcccccccchhhcccc
Q ss_pred CCCCCCCc---------------------------------------------------------cCCCCCCCCCCCCCC
Q 010577 455 GGPMQNFF---------------------------------------------------------VPIAQPGQQGQRPSG 477 (507)
Q Consensus 455 ~~~~~~~~---------------------------------------------------------~p~~~~~~~~~~~~~ 477 (507)
++|.-+.+ ..++++.+..++...
T Consensus 2073 ~~p~~~a~~~~~~~~~~qQ~~qQq~~~~~~~~~ql~~qq~q~~~~~r~q~~~~~r~~Q~rqQq~~~q~qQqqq~q~qq~~ 2152 (2220)
T KOG3598|consen 2073 GGPHFAAPSGPVSSETRQQIMQQQMREKLAAHHQLVEQQKQRDAREREQREREAREHQERQQQEAYQKQQQQQEQKQQIE 2152 (2220)
T ss_pred cCCcccCCCCccccchHHHHHHHhHHHHhhHHHHHHHhhhcccccccccchhhhhhHHHHHHHHHHHHHhhhhhhhhccc
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCcccc
Q 010577 478 RRAAGMQQNQQ-HVPMMQPQVGDIVS 502 (507)
Q Consensus 478 ~~~~~~~~~~~-~~~~~~~~~~~~~~ 502 (507)
+....++.+|+ -+..+.||.+|.++
T Consensus 2153 q~~q~~q~Qq~~~~~qa~qq~qplf~ 2178 (2220)
T KOG3598|consen 2153 QNNQIMQEQQREEAYQAEQQRQPLFR 2178 (2220)
T ss_pred chhHHHHHHhhhcccccccccchhhH
No 304
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=20.57 E-value=8.8e+02 Score=25.75 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=6.8
Q ss_pred HHHHhCCceecCc
Q 010577 362 ALLEMNGKMVVSK 374 (507)
Q Consensus 362 a~~~~~~~~~~g~ 374 (507)
|..-.+|..+-|+
T Consensus 172 ayh~~s~~P~p~~ 184 (1034)
T KOG0608|consen 172 AYHPRSGTPMPGR 184 (1034)
T ss_pred ccCCCCCCCCCcc
Confidence 3444456665555
No 305
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=20.40 E-value=3.7e+02 Score=19.92 Aligned_cols=46 Identities=15% Similarity=0.020 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 010577 37 DSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (507)
Q Consensus 37 ~~~l~~~f~~~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 86 (507)
.+.+++++...| ++.++....+. --....+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHHHHH
Confidence 456888888886 88888776543 33478899999998888876654
No 306
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=20.08 E-value=3.8e+02 Score=26.37 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=13.5
Q ss_pred EEeCCHHHHH-------HHHHHhCCceec
Q 010577 351 VAFSTPEEAS-------RALLEMNGKMVV 372 (507)
Q Consensus 351 v~f~~~~~A~-------~a~~~~~~~~~~ 372 (507)
+.|.+.+||. .|++.|++..-.
T Consensus 78 LnFqs~~DA~~Fa~~~~~A~e~l~~g~~~ 106 (409)
T KOG4590|consen 78 LTFQSEQDARAFARGVPVAIEALSGGTPE 106 (409)
T ss_pred ccccChhhhhhhhhhhhhhhhhhccCCCC
Confidence 3577777764 466777665443
Done!