Query 010577
Match_columns 507
No_of_seqs 318 out of 3164
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 09:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 5.2E-44 1.8E-48 334.5 30.1 255 21-396 20-276 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2.1E-43 7.1E-48 331.8 23.6 254 16-384 34-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 2.2E-33 7.6E-38 249.8 18.4 176 17-193 9-184 (213)
4 4f02_A Polyadenylate-binding p 100.0 8.5E-32 2.9E-36 239.6 20.2 173 201-390 14-187 (213)
5 3md3_A Nuclear and cytoplasmic 100.0 5.3E-31 1.8E-35 225.8 19.2 164 24-188 1-165 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 1.5E-30 5.2E-35 223.3 20.3 164 22-187 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 3E-30 1E-34 221.2 21.1 163 22-186 1-166 (167)
8 2qfj_A FBP-interacting repress 100.0 2.9E-30 1E-34 231.2 20.6 171 20-190 25-205 (216)
9 1l3k_A Heterogeneous nuclear r 100.0 2.7E-30 9.2E-35 227.7 19.3 178 14-193 4-186 (196)
10 3md3_A Nuclear and cytoplasmic 100.0 3.2E-30 1.1E-34 220.9 17.7 164 203-382 1-165 (166)
11 3nmr_A Cugbp ELAV-like family 100.0 1.4E-29 4.7E-34 218.9 20.3 165 22-187 2-174 (175)
12 2qfj_A FBP-interacting repress 100.0 1.7E-29 5.7E-34 226.3 21.0 177 200-383 26-204 (216)
13 1l3k_A Heterogeneous nuclear r 100.0 1.7E-29 5.9E-34 222.5 18.9 177 199-389 10-188 (196)
14 1fxl_A Paraneoplastic encephal 100.0 3.9E-29 1.3E-33 214.3 19.7 162 202-381 2-167 (167)
15 1b7f_A Protein (SXL-lethal pro 100.0 2E-29 6.8E-34 216.3 17.7 163 201-381 2-168 (168)
16 2cjk_A Nuclear polyadenylated 100.0 5E-30 1.7E-34 219.8 12.2 165 21-190 1-166 (167)
17 3nmr_A Cugbp ELAV-like family 100.0 4.9E-29 1.7E-33 215.4 18.4 165 201-382 2-175 (175)
18 2cjk_A Nuclear polyadenylated 100.0 5.6E-29 1.9E-33 213.2 14.8 163 201-384 2-166 (167)
19 1fje_B Nucleolin RBD12, protei 100.0 1.2E-29 4.2E-34 219.1 10.7 168 17-190 7-174 (175)
20 2g4b_A Splicing factor U2AF 65 100.0 2.5E-28 8.6E-33 210.2 18.3 158 21-187 2-171 (172)
21 3pgw_A U1-A; protein-RNA compl 100.0 4.5E-28 1.5E-32 226.1 20.9 164 18-188 4-281 (282)
22 3tyt_A Heterogeneous nuclear r 100.0 2.4E-28 8.1E-33 214.4 16.4 154 22-181 3-194 (205)
23 3smz_A Protein raver-1, ribonu 100.0 6.8E-28 2.3E-32 225.1 20.2 174 21-194 93-268 (284)
24 2yh0_A Splicing factor U2AF 65 100.0 4.2E-28 1.4E-32 214.0 17.4 163 21-190 2-194 (198)
25 2adc_A Polypyrimidine tract-bi 100.0 1.1E-27 3.6E-32 215.7 19.4 167 14-189 25-227 (229)
26 2g4b_A Splicing factor U2AF 65 100.0 9.4E-28 3.2E-32 206.7 14.6 158 201-382 3-172 (172)
27 3sde_A Paraspeckle component 1 100.0 3.3E-27 1.1E-31 216.7 18.7 163 15-191 14-180 (261)
28 3tyt_A Heterogeneous nuclear r 100.0 5.4E-28 1.9E-32 212.1 12.8 176 201-381 3-204 (205)
29 3pgw_A U1-A; protein-RNA compl 100.0 2.8E-27 9.4E-32 220.7 18.3 178 199-382 6-281 (282)
30 1fje_B Nucleolin RBD12, protei 99.9 2.2E-28 7.5E-33 211.2 9.1 166 198-384 9-174 (175)
31 1qm9_A Polypyrimidine tract-bi 99.9 2.6E-27 8.7E-32 208.7 15.4 159 22-189 2-196 (198)
32 2ghp_A U4/U6 snRNA-associated 99.9 3E-27 1E-31 221.7 15.5 167 22-190 116-291 (292)
33 2adc_A Polypyrimidine tract-bi 99.9 4.5E-27 1.5E-31 211.5 14.0 178 198-383 30-227 (229)
34 3sde_A Paraspeckle component 1 99.9 2.4E-26 8.3E-31 211.0 17.8 158 198-384 18-179 (261)
35 2yh0_A Splicing factor U2AF 65 99.9 1.4E-26 4.8E-31 204.2 14.8 178 201-384 3-194 (198)
36 1qm9_A Polypyrimidine tract-bi 99.9 3.9E-26 1.3E-30 201.2 13.3 174 202-383 3-196 (198)
37 4f25_A Polyadenylate-binding p 99.8 5.1E-21 1.7E-25 151.4 9.7 104 22-127 4-113 (115)
38 4fxv_A ELAV-like protein 1; RN 99.8 7.8E-21 2.7E-25 145.4 9.3 82 302-383 16-98 (99)
39 2kn4_A Immunoglobulin G-bindin 99.8 2.1E-21 7.1E-26 163.8 6.6 146 232-383 3-149 (158)
40 4fxv_A ELAV-like protein 1; RN 99.8 4.7E-20 1.6E-24 141.1 10.4 84 19-102 15-98 (99)
41 3s8s_A Histone-lysine N-methyl 99.8 1.2E-19 4E-24 141.6 12.3 91 303-393 4-95 (110)
42 2kn4_A Immunoglobulin G-bindin 99.8 3.2E-19 1.1E-23 150.3 13.2 138 52-191 2-151 (158)
43 2i2y_A Fusion protein consists 99.8 2E-20 6.7E-25 156.1 4.3 138 240-384 10-148 (150)
44 2e5h_A Zinc finger CCHC-type a 99.8 4.9E-19 1.7E-23 135.0 10.8 93 9-101 2-94 (94)
45 3s8s_A Histone-lysine N-methyl 99.8 7.5E-19 2.6E-23 137.0 10.6 84 20-103 3-86 (110)
46 2lkz_A RNA-binding protein 5; 99.8 2.1E-19 7.3E-24 135.5 7.2 86 17-102 3-94 (95)
47 2i2y_A Fusion protein consists 99.8 8.7E-19 3E-23 146.1 11.7 125 61-190 9-148 (150)
48 1x5s_A Cold-inducible RNA-bind 99.8 1.4E-18 4.7E-23 134.6 11.5 93 14-106 3-95 (102)
49 2lkz_A RNA-binding protein 5; 99.8 1.9E-19 6.4E-24 135.8 6.3 80 304-383 8-94 (95)
50 1x5u_A Splicing factor 3B subu 99.8 2.9E-18 1E-22 133.5 13.2 94 13-106 5-98 (105)
51 2cqc_A Arginine/serine-rich sp 99.8 1.7E-18 5.8E-23 132.3 11.2 91 12-102 4-94 (95)
52 2dgs_A DAZ-associated protein 99.8 3.8E-18 1.3E-22 131.3 13.0 91 15-106 2-92 (99)
53 2lxi_A RNA-binding protein 10; 99.8 2.1E-19 7E-24 135.4 5.2 82 23-104 1-84 (91)
54 2lxi_A RNA-binding protein 10; 99.8 1.5E-19 5.2E-24 136.1 4.2 79 306-384 2-83 (91)
55 2cq0_A Eukaryotic translation 99.8 2.7E-18 9.3E-23 133.2 11.4 92 14-105 6-97 (103)
56 2dgo_A Cytotoxic granule-assoc 99.8 4.4E-18 1.5E-22 134.9 12.8 95 12-106 4-98 (115)
57 2d9p_A Polyadenylate-binding p 99.8 5.4E-18 1.8E-22 131.5 12.9 94 11-106 3-96 (103)
58 2kxn_B Transformer-2 protein h 99.8 3.1E-18 1E-22 137.9 11.6 90 14-103 37-126 (129)
59 2dnm_A SRP46 splicing factor; 99.8 3.3E-18 1.1E-22 132.7 11.3 92 14-105 4-95 (103)
60 4f25_A Polyadenylate-binding p 99.8 1.8E-18 6.2E-23 136.7 10.0 108 110-218 4-113 (115)
61 1whw_A Hypothetical protein ri 99.8 4.7E-18 1.6E-22 130.8 12.0 88 19-106 4-91 (99)
62 2cph_A RNA binding motif prote 99.8 7.4E-18 2.5E-22 131.8 13.2 94 13-106 5-100 (107)
63 2dnz_A Probable RNA-binding pr 99.8 8.6E-18 3E-22 128.3 13.0 86 20-105 2-87 (95)
64 3p5t_L Cleavage and polyadenyl 99.8 6.4E-19 2.2E-23 132.8 6.5 80 306-385 2-84 (90)
65 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.2E-18 7.4E-23 133.5 9.5 92 15-106 4-95 (102)
66 3q2s_C Cleavage and polyadenyl 99.8 1.1E-18 3.7E-23 155.3 8.6 85 304-388 67-154 (229)
67 2wbr_A GW182, gawky, LD47780P; 99.8 1.6E-18 5.6E-23 124.7 7.9 76 305-385 7-82 (89)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.7E-18 9.3E-23 128.1 9.4 83 19-101 3-85 (85)
69 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.3E-18 7.9E-23 129.2 8.9 81 304-384 5-86 (87)
70 3lqv_A PRE-mRNA branch site pr 99.8 2.9E-18 1E-22 135.9 10.0 106 19-137 4-109 (115)
71 3md1_A Nuclear and cytoplasmic 99.8 3E-18 1E-22 127.2 9.3 79 306-384 2-81 (83)
72 2do4_A Squamous cell carcinoma 99.8 9.1E-18 3.1E-22 129.4 12.3 89 14-103 8-96 (100)
73 2ywk_A Putative RNA-binding pr 99.8 2.9E-18 1E-22 130.9 9.5 89 13-102 6-94 (95)
74 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.4E-18 1.2E-22 128.2 9.4 84 20-103 3-86 (87)
75 2cq3_A RNA-binding protein 9; 99.8 1.4E-17 4.7E-22 129.2 13.1 94 11-106 3-96 (103)
76 2cqd_A RNA-binding region cont 99.8 8.7E-18 3E-22 133.4 12.2 93 11-104 5-97 (116)
77 2dh8_A DAZ-associated protein 99.8 4.9E-18 1.7E-22 132.2 10.5 95 10-105 3-97 (105)
78 1s79_A Lupus LA protein; RRM, 99.8 3.3E-18 1.1E-22 131.5 9.3 82 304-386 10-91 (103)
79 2do4_A Squamous cell carcinoma 99.7 3.4E-18 1.2E-22 131.8 9.5 82 303-384 15-96 (100)
80 2cpz_A CUG triplet repeat RNA- 99.7 7.1E-18 2.4E-22 133.6 11.5 90 17-106 19-108 (115)
81 1x4h_A RNA-binding protein 28; 99.7 1.3E-17 4.4E-22 131.4 12.9 91 15-105 7-103 (111)
82 2la6_A RNA-binding protein FUS 99.7 9.7E-18 3.3E-22 128.9 11.6 88 14-101 4-99 (99)
83 2dnz_A Probable RNA-binding pr 99.7 4.9E-18 1.7E-22 129.6 9.9 80 304-383 4-84 (95)
84 2x1f_A MRNA 3'-END-processing 99.7 3.3E-18 1.1E-22 130.7 8.9 82 305-386 2-84 (96)
85 1u6f_A Tcubp1, RNA-binding pro 99.7 9.4E-18 3.2E-22 137.9 12.2 94 13-106 32-125 (139)
86 3ns6_A Eukaryotic translation 99.7 1.4E-18 4.8E-23 133.5 6.6 82 305-386 6-95 (100)
87 2do0_A HnRNP M, heterogeneous 99.7 1.7E-17 5.7E-22 131.4 13.0 90 13-103 5-94 (114)
88 2x1f_A MRNA 3'-END-processing 99.7 6.1E-18 2.1E-22 129.2 10.1 83 22-104 1-83 (96)
89 2wbr_A GW182, gawky, LD47780P; 99.7 4.1E-18 1.4E-22 122.7 8.4 77 19-101 3-79 (89)
90 2dng_A Eukaryotic translation 99.7 1.3E-17 4.5E-22 129.2 12.0 92 13-106 5-96 (103)
91 2khc_A Testis-specific RNP-typ 99.7 4.8E-18 1.6E-22 135.4 9.7 84 18-101 35-118 (118)
92 3md1_A Nuclear and cytoplasmic 99.7 8.2E-18 2.8E-22 124.9 10.3 81 23-103 1-81 (83)
93 1sjq_A Polypyrimidine tract-bi 99.7 2.2E-18 7.4E-23 131.0 7.2 78 302-384 13-92 (105)
94 1p27_B RNA-binding protein 8A; 99.7 8.9E-18 3.1E-22 131.0 11.0 90 14-103 14-103 (106)
95 2div_A TRNA selenocysteine ass 99.7 6.8E-18 2.3E-22 129.9 10.1 87 17-103 3-94 (99)
96 2lea_A Serine/arginine-rich sp 99.7 8.7E-19 3E-23 142.4 5.2 121 245-384 6-127 (135)
97 2dnh_A Bruno-like 5, RNA bindi 99.7 2.9E-17 9.8E-22 127.9 13.7 88 17-105 9-99 (105)
98 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.1E-18 1.1E-22 127.8 7.8 80 303-382 5-85 (85)
99 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.1E-18 7.3E-23 145.9 7.7 141 248-388 11-156 (165)
100 3n9u_C Cleavage and polyadenyl 99.7 6.7E-18 2.3E-22 140.4 10.5 86 304-389 54-142 (156)
101 2e5h_A Zinc finger CCHC-type a 99.7 6.7E-18 2.3E-22 128.6 9.7 80 303-382 14-94 (94)
102 2cq0_A Eukaryotic translation 99.7 6E-18 2.1E-22 131.2 9.5 83 302-384 12-95 (103)
103 2jrs_A RNA-binding protein 39; 99.7 1.5E-17 5.2E-22 129.5 11.8 87 17-103 20-106 (108)
104 2d9p_A Polyadenylate-binding p 99.7 6.4E-18 2.2E-22 131.1 9.5 82 302-384 12-93 (103)
105 1sjq_A Polypyrimidine tract-bi 99.7 7.3E-18 2.5E-22 128.0 9.6 83 18-106 11-95 (105)
106 3p5t_L Cleavage and polyadenyl 99.7 2.9E-18 9.9E-23 129.2 7.3 81 24-104 2-84 (90)
107 2fy1_A RNA-binding motif prote 99.7 5.4E-18 1.9E-22 134.0 9.2 81 303-383 5-85 (116)
108 2cqi_A Nucleolysin TIAR; RNA r 99.7 2E-17 6.8E-22 128.2 12.2 92 13-106 5-96 (103)
109 2cpe_A RNA-binding protein EWS 99.7 1.3E-17 4.3E-22 131.8 11.2 93 14-106 6-106 (113)
110 1wi8_A EIF-4B, eukaryotic tran 99.7 1.4E-17 4.8E-22 129.3 11.3 91 14-106 6-97 (104)
111 2ywk_A Putative RNA-binding pr 99.7 4.4E-18 1.5E-22 129.9 8.3 80 304-383 15-94 (95)
112 2dgp_A Bruno-like 4, RNA bindi 99.7 1.5E-17 5.1E-22 129.8 11.4 91 15-105 5-98 (106)
113 3r27_A HnRNP L, heterogeneous 99.7 3.8E-18 1.3E-22 128.2 7.4 79 301-384 17-97 (100)
114 1whw_A Hypothetical protein ri 99.7 5.3E-18 1.8E-22 130.5 8.5 82 303-384 6-88 (99)
115 2cpf_A RNA binding motif prote 99.7 1.1E-17 3.8E-22 128.5 10.3 86 21-106 3-91 (98)
116 2dnh_A Bruno-like 5, RNA bindi 99.7 7.6E-18 2.6E-22 131.2 9.3 82 303-384 13-97 (105)
117 2dgs_A DAZ-associated protein 99.7 9.1E-18 3.1E-22 129.1 9.6 81 303-384 8-89 (99)
118 1x5t_A Splicing factor 3B subu 99.7 8.1E-18 2.8E-22 128.7 9.2 87 20-106 2-89 (96)
119 2cqc_A Arginine/serine-rich sp 99.7 7.1E-18 2.4E-22 128.8 8.8 81 303-383 13-94 (95)
120 2la6_A RNA-binding protein FUS 99.7 9.5E-18 3.2E-22 129.0 9.3 80 303-382 11-99 (99)
121 1wg5_A Heterogeneous nuclear r 99.7 2.4E-17 8.2E-22 127.7 11.6 89 14-104 6-95 (104)
122 2cqp_A RNA-binding protein 12; 99.7 6.8E-18 2.3E-22 129.6 8.4 89 15-103 7-95 (98)
123 2cpz_A CUG triplet repeat RNA- 99.7 6.8E-18 2.3E-22 133.8 8.7 82 303-384 23-105 (115)
124 1wez_A HnRNP H', FTP-3, hetero 99.7 1.2E-17 4.2E-22 128.4 9.6 88 14-104 6-93 (102)
125 3r27_A HnRNP L, heterogeneous 99.7 1.5E-17 5.1E-22 124.9 9.8 80 18-103 16-97 (100)
126 2fy1_A RNA-binding motif prote 99.7 3E-17 1E-21 129.7 12.0 85 19-104 3-87 (116)
127 2ek1_A RNA-binding protein 12; 99.7 3.3E-18 1.1E-22 130.6 6.2 84 18-101 10-93 (95)
128 3s7r_A Heterogeneous nuclear r 99.7 1.6E-17 5.5E-22 124.4 9.7 84 16-100 4-87 (87)
129 1x5u_A Splicing factor 3B subu 99.7 9.5E-18 3.3E-22 130.6 8.7 82 303-384 13-95 (105)
130 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.9E-18 2E-22 131.1 7.5 82 303-384 10-92 (102)
131 3ns6_A Eukaryotic translation 99.7 7.5E-18 2.5E-22 129.5 8.0 83 20-102 3-92 (100)
132 1wex_A Hypothetical protein (r 99.7 4.2E-17 1.4E-21 125.2 12.0 86 14-105 6-93 (104)
133 1p27_B RNA-binding protein 8A; 99.7 9.6E-18 3.3E-22 130.9 8.6 82 303-384 21-103 (106)
134 1s79_A Lupus LA protein; RRM, 99.7 1.9E-17 6.4E-22 127.3 10.0 82 19-102 7-88 (103)
135 1p1t_A Cleavage stimulation fa 99.7 1E-17 3.6E-22 130.2 8.7 86 305-390 8-94 (104)
136 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.7E-17 5.9E-22 136.8 10.5 94 7-100 47-140 (140)
137 1x5t_A Splicing factor 3B subu 99.7 6.3E-18 2.1E-22 129.3 7.3 81 304-384 4-86 (96)
138 2dhg_A TRNA selenocysteine ass 99.7 3.8E-17 1.3E-21 126.9 11.9 87 18-105 4-92 (104)
139 1x4e_A RNA binding motif, sing 99.7 6.8E-18 2.3E-22 125.8 7.3 80 304-383 4-84 (85)
140 3ulh_A THO complex subunit 4; 99.7 1.2E-17 4E-22 130.6 8.9 81 302-382 26-106 (107)
141 2dgo_A Cytotoxic granule-assoc 99.7 1.2E-17 4.1E-22 132.4 9.0 81 303-383 13-94 (115)
142 2dgv_A HnRNP M, heterogeneous 99.7 4.5E-17 1.5E-21 123.5 11.8 84 19-104 4-87 (92)
143 2jrs_A RNA-binding protein 39; 99.7 1E-17 3.5E-22 130.5 8.5 82 303-384 24-106 (108)
144 2kxn_B Transformer-2 protein h 99.7 1.2E-17 4E-22 134.4 9.0 83 302-384 43-126 (129)
145 1x4e_A RNA binding motif, sing 99.7 7.4E-18 2.5E-22 125.7 7.1 82 20-101 2-83 (85)
146 2dnm_A SRP46 splicing factor; 99.7 7.5E-18 2.5E-22 130.7 7.4 81 303-383 11-92 (103)
147 2cq3_A RNA-binding protein 9; 99.7 2.1E-17 7.2E-22 128.1 9.9 80 303-383 13-92 (103)
148 1x5s_A Cold-inducible RNA-bind 99.7 7.7E-18 2.6E-22 130.4 7.3 82 303-384 10-92 (102)
149 2do0_A HnRNP M, heterogeneous 99.7 1.8E-17 6.2E-22 131.2 9.6 81 303-383 13-93 (114)
150 2cpy_A RNA-binding protein 12; 99.7 1E-17 3.6E-22 132.1 8.1 87 303-390 13-100 (114)
151 1oo0_B CG8781-PA, drosophila Y 99.7 1.9E-17 6.4E-22 130.1 9.5 90 14-103 17-106 (110)
152 1x4d_A Matrin 3; structural ge 99.7 6.1E-18 2.1E-22 128.7 6.4 75 304-383 14-91 (102)
153 2hgl_A HNRPF protein, heteroge 99.7 9E-18 3.1E-22 135.4 7.8 82 304-386 43-127 (136)
154 2dhg_A TRNA selenocysteine ass 99.7 1.1E-17 3.9E-22 129.9 8.1 82 303-384 7-90 (104)
155 3ulh_A THO complex subunit 4; 99.7 2.7E-17 9.2E-22 128.5 10.3 85 16-101 22-106 (107)
156 2khc_A Testis-specific RNP-typ 99.7 9.7E-18 3.3E-22 133.6 7.8 80 303-382 38-118 (118)
157 2cqg_A TDP-43, TAR DNA-binding 99.7 6.8E-17 2.3E-21 125.2 12.3 93 12-106 4-96 (103)
158 1p1t_A Cleavage stimulation fa 99.7 1.2E-17 4.2E-22 129.8 8.1 86 19-104 4-89 (104)
159 2cpf_A RNA binding motif prote 99.7 1.2E-17 4.1E-22 128.3 7.9 80 304-383 4-87 (98)
160 2db1_A Heterogeneous nuclear r 99.7 1.5E-17 5E-22 131.9 8.6 82 304-386 16-100 (118)
161 2cph_A RNA binding motif prote 99.7 1.7E-17 5.7E-22 129.8 8.8 82 303-384 13-97 (107)
162 1oo0_B CG8781-PA, drosophila Y 99.7 7E-18 2.4E-22 132.6 6.6 82 303-384 24-106 (110)
163 2dgx_A KIAA0430 protein; RRM d 99.7 1.2E-17 4.1E-22 127.4 7.5 78 304-383 8-89 (96)
164 2dgv_A HnRNP M, heterogeneous 99.7 1.6E-17 5.5E-22 125.9 8.1 81 303-384 6-86 (92)
165 2div_A TRNA selenocysteine ass 99.7 1.5E-17 5E-22 128.0 8.0 81 303-383 7-93 (99)
166 2cpi_A CCR4-NOT transcription 99.7 2.3E-17 7.8E-22 129.5 9.1 82 303-384 13-101 (111)
167 1x4h_A RNA-binding protein 28; 99.7 2.1E-17 7.2E-22 130.1 8.8 82 303-384 13-101 (111)
168 2hvz_A Splicing factor, argini 99.7 1.9E-17 6.6E-22 127.8 8.4 92 24-120 1-100 (101)
169 2cq4_A RNA binding motif prote 99.7 2E-17 6.9E-22 130.8 8.6 81 305-386 25-106 (114)
170 2kt5_A RNA and export factor-b 99.7 8.2E-17 2.8E-21 129.3 12.3 89 15-104 27-115 (124)
171 2dgw_A Probable RNA-binding pr 99.7 4.1E-17 1.4E-21 123.3 9.9 85 16-103 3-87 (91)
172 2cq1_A PTB-like protein L; RRM 99.7 3.2E-17 1.1E-21 125.0 9.4 77 303-384 13-91 (101)
173 3ucg_A Polyadenylate-binding p 99.7 2.4E-17 8.2E-22 124.1 8.6 78 305-383 6-84 (89)
174 2hgl_A HNRPF protein, heteroge 99.7 1.4E-17 4.7E-22 134.3 7.7 84 16-101 37-123 (136)
175 3ucg_A Polyadenylate-binding p 99.7 2.7E-17 9.2E-22 123.9 8.8 82 21-103 4-85 (89)
176 3ex7_B RNA-binding protein 8A; 99.7 4.5E-17 1.6E-21 131.3 10.7 91 14-104 13-103 (126)
177 4a8x_A RNA-binding protein wit 99.7 2.8E-17 9.4E-22 123.6 8.8 83 21-103 2-85 (88)
178 2dnn_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 126.5 9.7 77 306-384 17-93 (109)
179 2cq1_A PTB-like protein L; RRM 99.7 9.8E-17 3.3E-21 122.3 11.7 84 17-106 9-94 (101)
180 2ad9_A Polypyrimidine tract-bi 99.7 1.9E-17 6.7E-22 129.2 8.0 77 303-384 29-107 (119)
181 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.6E-17 8.8E-22 127.6 8.6 81 303-384 13-93 (103)
182 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.2E-17 3.9E-22 128.5 6.6 80 303-384 17-98 (100)
183 2err_A Ataxin-2-binding protei 99.7 1.6E-17 5.6E-22 129.8 7.5 82 302-384 26-107 (109)
184 2mss_A Protein (musashi1); RNA 99.7 1.4E-17 4.7E-22 120.9 6.6 74 307-381 1-75 (75)
185 1x4a_A Splicing factor, argini 99.7 1.5E-16 5E-21 124.7 12.9 89 14-105 13-101 (109)
186 2ad9_A Polypyrimidine tract-bi 99.7 8.2E-17 2.8E-21 125.6 11.2 85 16-106 24-110 (119)
187 2ek1_A RNA-binding protein 12; 99.7 1.3E-17 4.4E-22 127.3 6.5 80 304-383 14-94 (95)
188 1wez_A HnRNP H', FTP-3, hetero 99.7 2E-17 7E-22 127.1 7.7 79 303-383 13-91 (102)
189 3n9u_C Cleavage and polyadenyl 99.7 3.9E-17 1.3E-21 135.8 9.9 81 22-102 54-136 (156)
190 2dgw_A Probable RNA-binding pr 99.7 3.1E-17 1.1E-21 123.9 8.5 80 303-384 8-87 (91)
191 2lea_A Serine/arginine-rich sp 99.7 2.2E-17 7.6E-22 134.1 8.2 92 14-105 38-129 (135)
192 2kt5_A RNA and export factor-b 99.7 3.2E-17 1.1E-21 131.7 8.9 81 303-383 33-113 (124)
193 2m2b_A RNA-binding protein 10; 99.7 2.8E-17 9.6E-22 133.2 8.7 90 14-104 14-109 (131)
194 1x4c_A Splicing factor, argini 99.7 1.1E-16 3.7E-21 125.0 11.6 84 14-104 6-94 (108)
195 2mss_A Protein (musashi1); RNA 99.7 2.5E-17 8.7E-22 119.4 7.5 75 25-100 1-75 (75)
196 2dgp_A Bruno-like 4, RNA bindi 99.7 1.7E-17 6E-22 129.4 7.0 82 303-384 11-96 (106)
197 3s7r_A Heterogeneous nuclear r 99.7 3.9E-17 1.3E-21 122.3 8.6 79 302-381 8-87 (87)
198 2cpe_A RNA-binding protein EWS 99.7 2.7E-17 9.4E-22 129.8 8.1 82 303-384 13-103 (113)
199 4a8x_A RNA-binding protein wit 99.7 1.8E-17 6.3E-22 124.5 6.8 81 304-384 3-85 (88)
200 2dha_A FLJ20171 protein; RRM d 99.7 2.6E-17 8.8E-22 130.2 7.9 87 303-390 21-111 (123)
201 2lmi_A GRSF-1, G-rich sequence 99.7 1.1E-17 3.6E-22 130.5 5.6 84 303-387 9-95 (107)
202 2dng_A Eukaryotic translation 99.7 3.8E-17 1.3E-21 126.6 8.7 79 303-383 13-92 (103)
203 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.8E-17 9.6E-22 126.4 7.7 87 15-103 11-98 (100)
204 2fc9_A NCL protein; structure 99.7 8.5E-17 2.9E-21 124.2 10.4 89 13-105 5-93 (101)
205 2cqp_A RNA-binding protein 12; 99.7 1.6E-17 5.6E-22 127.5 6.3 80 304-383 14-94 (98)
206 2dgx_A KIAA0430 protein; RRM d 99.7 5.7E-17 2E-21 123.6 9.2 83 18-103 4-90 (96)
207 1wi8_A EIF-4B, eukaryotic tran 99.7 3.6E-17 1.2E-21 126.9 8.3 80 303-384 13-94 (104)
208 2cpi_A CCR4-NOT transcription 99.7 4.6E-17 1.6E-21 127.8 8.9 92 13-104 5-102 (111)
209 2krb_A Eukaryotic translation 99.7 1.8E-17 6E-22 122.1 6.1 73 306-379 2-81 (81)
210 1wex_A Hypothetical protein (r 99.7 3.2E-17 1.1E-21 125.9 7.7 77 303-384 13-91 (104)
211 2rs2_A Musashi-1, RNA-binding 99.7 5.5E-17 1.9E-21 126.7 9.1 90 14-104 16-105 (109)
212 1x4d_A Matrin 3; structural ge 99.7 5E-17 1.7E-21 123.6 8.6 84 17-106 9-95 (102)
213 2ki2_A SS-DNA binding protein 99.7 1.2E-17 4.1E-22 126.0 5.2 80 306-386 2-82 (90)
214 1x4f_A Matrin 3; structural ge 99.7 2.4E-17 8E-22 127.2 6.8 77 303-384 23-102 (112)
215 1wg5_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 127.0 7.6 79 304-383 14-93 (104)
216 1x5o_A RNA binding motif, sing 99.7 6.4E-17 2.2E-21 127.9 9.6 80 304-383 24-111 (114)
217 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.4E-17 8.3E-22 120.3 6.6 76 24-100 1-76 (77)
218 2dis_A Unnamed protein product 99.7 9.8E-17 3.4E-21 125.8 10.4 88 19-106 4-95 (109)
219 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.1E-17 7.3E-22 120.6 6.2 75 306-381 1-76 (77)
220 2cqd_A RNA-binding region cont 99.7 4.1E-17 1.4E-21 129.4 8.2 80 303-383 15-95 (116)
221 2cpy_A RNA-binding protein 12; 99.7 3.1E-17 1.1E-21 129.4 7.4 86 16-103 8-94 (114)
222 3ex7_B RNA-binding protein 8A; 99.7 4.1E-17 1.4E-21 131.6 8.3 82 303-384 20-102 (126)
223 2dnq_A RNA-binding protein 4B; 99.7 2.7E-16 9.3E-21 118.4 12.3 80 19-106 4-83 (90)
224 2rs2_A Musashi-1, RNA-binding 99.7 5.1E-17 1.7E-21 126.9 8.4 81 303-384 23-104 (109)
225 2err_A Ataxin-2-binding protei 99.7 5.5E-17 1.9E-21 126.8 8.6 89 13-103 19-107 (109)
226 1why_A Hypothetical protein ri 99.7 2.5E-16 8.4E-21 120.5 12.0 82 16-103 10-93 (97)
227 2a3j_A U1 small nuclear ribonu 99.7 3.9E-17 1.3E-21 130.2 7.6 83 303-387 27-113 (127)
228 2cpj_A Non-POU domain-containi 99.7 2E-16 7E-21 121.5 11.3 86 14-105 6-91 (99)
229 2db1_A Heterogeneous nuclear r 99.7 4E-17 1.4E-21 129.4 7.5 84 17-102 11-97 (118)
230 2a3j_A U1 small nuclear ribonu 99.7 1.4E-16 4.8E-21 126.9 10.7 85 17-104 23-111 (127)
231 1u6f_A Tcubp1, RNA-binding pro 99.7 3.3E-17 1.1E-21 134.6 7.2 82 303-384 40-122 (139)
232 1x4a_A Splicing factor, argini 99.7 8.5E-17 2.9E-21 126.0 9.2 78 304-383 21-98 (109)
233 2dh8_A DAZ-associated protein 99.7 3E-17 1E-21 127.7 6.4 81 303-384 14-95 (105)
234 2hgm_A HNRPF protein, heteroge 99.7 5.7E-17 1.9E-21 128.4 8.0 86 14-102 33-120 (126)
235 2la4_A Nuclear and cytoplasmic 99.7 9.5E-17 3.3E-21 123.9 9.1 76 303-383 25-100 (101)
236 2m2b_A RNA-binding protein 10; 99.7 1.5E-17 5.1E-22 134.8 4.7 81 303-384 21-108 (131)
237 2krb_A Eukaryotic translation 99.7 6.4E-17 2.2E-21 119.1 7.6 73 23-97 1-80 (81)
238 1wel_A RNA-binding protein 12; 99.7 7E-17 2.4E-21 129.6 8.4 84 304-388 24-108 (124)
239 2ytc_A PRE-mRNA-splicing facto 99.7 2E-16 6.8E-21 117.9 10.2 81 15-101 4-85 (85)
240 2nlw_A Eukaryotic translation 99.7 3.5E-17 1.2E-21 127.0 6.2 79 304-383 14-99 (105)
241 2jwn_A Embryonic polyadenylate 99.7 5.5E-17 1.9E-21 130.4 7.4 78 305-383 36-114 (124)
242 2fc9_A NCL protein; structure 99.7 8.3E-17 2.8E-21 124.2 8.1 78 303-383 13-90 (101)
243 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.3E-16 8E-21 132.2 11.2 87 18-104 34-120 (156)
244 2dnn_A RNA-binding protein 12; 99.7 1E-16 3.5E-21 124.1 8.2 81 18-101 11-91 (109)
245 1x5o_A RNA binding motif, sing 99.7 4.9E-16 1.7E-20 122.8 12.3 86 16-102 18-111 (114)
246 1whx_A Hypothetical protein ri 99.7 4.8E-17 1.6E-21 127.4 6.3 80 18-103 5-84 (111)
247 2nlw_A Eukaryotic translation 99.7 1.5E-16 5E-21 123.5 9.0 85 18-104 10-101 (105)
248 2ki2_A SS-DNA binding protein 99.7 2.4E-17 8.2E-22 124.3 4.5 79 24-103 2-80 (90)
249 1x4b_A Heterogeneous nuclear r 99.7 9.6E-17 3.3E-21 127.3 8.1 78 306-384 28-106 (116)
250 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.2E-16 4E-21 134.1 9.1 81 303-383 37-118 (156)
251 2jvr_A Nucleolar protein 3; RN 99.7 5.4E-17 1.8E-21 125.8 6.5 78 304-384 27-105 (111)
252 2cq4_A RNA binding motif prote 99.7 4.3E-17 1.5E-21 128.9 6.0 83 20-103 22-104 (114)
253 2jwn_A Embryonic polyadenylate 99.7 1.7E-16 5.9E-21 127.5 9.5 81 22-103 35-115 (124)
254 2fc8_A NCL protein; structure 99.7 3.1E-16 1.1E-20 121.3 10.6 89 14-105 6-94 (102)
255 2e5j_A Methenyltetrahydrofolat 99.7 4.5E-16 1.5E-20 119.0 11.3 85 14-103 10-94 (97)
256 2hgn_A Heterogeneous nuclear r 99.7 3.8E-17 1.3E-21 132.1 5.6 85 17-104 40-124 (139)
257 1why_A Hypothetical protein ri 99.7 1.4E-16 4.8E-21 121.9 8.5 76 304-384 16-93 (97)
258 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-16 4E-21 124.4 8.1 79 301-386 27-105 (108)
259 2dnq_A RNA-binding protein 4B; 99.7 1.8E-16 6E-21 119.4 8.8 74 303-383 6-79 (90)
260 2cqg_A TDP-43, TAR DNA-binding 99.7 1.9E-16 6.5E-21 122.7 9.2 80 303-384 13-93 (103)
261 2lmi_A GRSF-1, G-rich sequence 99.7 7.7E-17 2.6E-21 125.5 6.9 85 16-102 4-91 (107)
262 1x4f_A Matrin 3; structural ge 99.7 1E-16 3.4E-21 123.7 7.3 80 20-105 22-104 (112)
263 2dis_A Unnamed protein product 99.7 7.6E-17 2.6E-21 126.4 6.7 81 304-384 7-92 (109)
264 3lqv_A PRE-mRNA branch site pr 99.7 2.3E-16 7.9E-21 124.9 9.5 81 303-385 6-86 (115)
265 2dgt_A RNA-binding protein 30; 99.7 3.9E-16 1.3E-20 118.1 10.4 83 15-105 2-84 (92)
266 2cpj_A Non-POU domain-containi 99.7 1.4E-16 4.8E-21 122.4 8.0 76 303-383 13-88 (99)
267 1fj7_A Nucleolin RBD1, protein 99.7 4.9E-17 1.7E-21 125.5 5.1 88 15-104 9-96 (101)
268 2dgu_A Heterogeneous nuclear r 99.7 3.7E-16 1.3E-20 120.9 10.1 84 15-106 3-86 (103)
269 1wel_A RNA-binding protein 12; 99.7 1E-16 3.6E-21 128.6 7.1 85 18-103 20-104 (124)
270 2ytc_A PRE-mRNA-splicing facto 99.7 2E-16 6.7E-21 117.9 8.2 75 303-382 10-85 (85)
271 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-16 4.4E-21 123.7 7.4 82 19-104 24-106 (111)
272 2hgm_A HNRPF protein, heteroge 99.7 9.5E-17 3.3E-21 127.1 6.7 81 303-385 40-122 (126)
273 1x4c_A Splicing factor, argini 99.7 2E-16 7E-21 123.4 8.5 74 304-383 14-92 (108)
274 1x4b_A Heterogeneous nuclear r 99.7 2.8E-16 9.6E-21 124.6 9.3 86 20-106 24-109 (116)
275 2diu_A KIAA0430 protein; struc 99.7 9.7E-16 3.3E-20 111.3 11.2 76 21-106 7-87 (96)
276 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2E-16 6.9E-21 130.3 8.6 79 303-381 61-140 (140)
277 2xnq_A Nuclear polyadenylated 99.7 3E-16 1E-20 119.6 8.8 76 302-384 19-95 (97)
278 1nu4_A U1A RNA binding domain; 99.7 4.8E-17 1.7E-21 124.6 4.3 82 303-386 6-91 (97)
279 1x4g_A Nucleolysin TIAR; struc 99.7 2.7E-16 9.1E-21 123.1 8.5 78 302-384 22-99 (109)
280 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.8E-16 1.3E-20 132.0 10.1 89 16-104 65-153 (165)
281 2dnp_A RNA-binding protein 14; 99.7 5.4E-16 1.9E-20 116.7 9.8 81 17-105 3-83 (90)
282 2la4_A Nuclear and cytoplasmic 99.6 3.8E-16 1.3E-20 120.5 9.0 78 19-102 23-100 (101)
283 2dha_A FLJ20171 protein; RRM d 99.6 2.4E-16 8E-21 124.7 7.9 80 20-101 20-103 (123)
284 2hgn_A Heterogeneous nuclear r 99.6 5.2E-17 1.8E-21 131.4 4.2 80 303-384 44-123 (139)
285 1iqt_A AUF1, heterogeneous nuc 99.6 6E-17 2E-21 117.5 3.9 74 307-381 1-75 (75)
286 1sjr_A Polypyrimidine tract-bi 99.6 1.1E-15 3.9E-20 125.3 11.9 82 19-104 42-125 (164)
287 1x4g_A Nucleolysin TIAR; struc 99.6 6.9E-16 2.4E-20 120.7 10.3 82 19-106 21-102 (109)
288 2hvz_A Splicing factor, argini 99.6 1.2E-16 4.1E-21 123.3 5.8 75 306-384 1-75 (101)
289 1iqt_A AUF1, heterogeneous nuc 99.6 1.1E-16 3.6E-21 116.2 5.1 75 25-100 1-75 (75)
290 3q2s_C Cleavage and polyadenyl 99.6 3E-16 1E-20 139.5 9.1 82 22-103 67-150 (229)
291 1whx_A Hypothetical protein ri 99.6 2.4E-16 8.1E-21 123.4 7.4 75 304-383 9-83 (111)
292 2jvo_A Nucleolar protein 3; nu 99.6 6.2E-16 2.1E-20 120.3 9.6 84 13-104 21-104 (108)
293 2cpx_A Hypothetical protein FL 99.6 2.7E-16 9.2E-21 124.6 7.7 91 16-106 18-108 (115)
294 3zzy_A Polypyrimidine tract-bi 99.6 4.6E-16 1.6E-20 122.8 8.8 75 306-384 29-106 (130)
295 2dgt_A RNA-binding protein 30; 99.6 3.7E-16 1.3E-20 118.2 8.0 74 303-383 8-81 (92)
296 2kvi_A Nuclear polyadenylated 99.6 4.1E-16 1.4E-20 118.9 8.3 77 302-385 7-84 (96)
297 2xnq_A Nuclear polyadenylated 99.6 8.9E-16 3E-20 117.0 10.0 82 14-103 13-95 (97)
298 1nu4_A U1A RNA binding domain; 99.6 2.2E-16 7.6E-21 120.9 6.6 84 18-104 3-90 (97)
299 2j8a_A Histone-lysine N-methyl 99.6 3.2E-16 1.1E-20 120.6 7.3 81 306-386 3-98 (136)
300 2e5j_A Methenyltetrahydrofolat 99.6 2.8E-16 9.4E-21 120.2 7.0 77 304-384 18-94 (97)
301 3pgw_S U1-70K; protein-RNA com 99.6 3E-17 1E-21 160.0 1.8 80 304-383 101-181 (437)
302 2fc8_A NCL protein; structure 99.6 6.7E-16 2.3E-20 119.4 8.9 80 302-384 12-92 (102)
303 2f3j_A RNA and export factor b 99.6 3.8E-16 1.3E-20 132.9 8.2 81 303-383 86-166 (177)
304 2lcw_A RNA-binding protein FUS 99.4 1.9E-17 6.4E-22 131.3 0.0 83 304-386 6-97 (116)
305 1sjr_A Polypyrimidine tract-bi 99.6 3.5E-16 1.2E-20 128.3 7.5 76 306-384 47-124 (164)
306 2f3j_A RNA and export factor b 99.6 9.4E-16 3.2E-20 130.5 10.3 84 19-103 84-167 (177)
307 2dnp_A RNA-binding protein 14; 99.6 4.2E-16 1.4E-20 117.4 7.2 74 303-383 7-80 (90)
308 2e44_A Insulin-like growth fac 99.6 1.1E-15 3.8E-20 116.7 9.6 83 17-103 9-92 (96)
309 2kvi_A Nuclear polyadenylated 99.6 1E-15 3.6E-20 116.6 9.2 79 18-104 5-84 (96)
310 1wf1_A RNA-binding protein RAL 99.6 1.4E-15 4.7E-20 119.3 10.0 80 18-105 22-102 (110)
311 2cq2_A Hypothetical protein LO 99.6 2.3E-16 7.9E-21 121.6 5.3 76 303-383 23-105 (114)
312 1wg1_A KIAA1579 protein, homol 99.6 6.6E-16 2.2E-20 115.6 7.5 74 304-383 4-77 (88)
313 2cpx_A Hypothetical protein FL 99.6 4E-16 1.4E-20 123.6 6.7 78 304-384 24-105 (115)
314 2diu_A KIAA0430 protein; struc 99.6 8.3E-16 2.8E-20 111.6 7.6 69 307-384 11-84 (96)
315 2cpd_A Apobec-1 stimulating pr 99.6 4.2E-15 1.4E-19 114.1 12.0 84 14-105 6-91 (99)
316 1wg1_A KIAA1579 protein, homol 99.6 9.6E-16 3.3E-20 114.7 8.1 78 20-104 2-79 (88)
317 1x5p_A Negative elongation fac 99.6 4.5E-15 1.5E-19 113.4 11.9 82 17-106 9-90 (97)
318 2dgu_A Heterogeneous nuclear r 99.6 6.5E-16 2.2E-20 119.5 7.1 74 304-384 10-83 (103)
319 2lcw_A RNA-binding protein FUS 99.4 3.7E-17 1.3E-21 129.7 0.0 88 19-106 3-98 (116)
320 2cqh_A IGF-II mRNA-binding pro 99.6 9.2E-16 3.1E-20 116.3 7.8 80 19-105 4-85 (93)
321 1fjc_A Nucleolin RBD2, protein 99.6 2.2E-16 7.5E-21 120.6 4.3 77 304-384 15-91 (96)
322 1fj7_A Nucleolin RBD1, protein 99.6 6.3E-17 2.2E-21 124.9 1.2 79 304-384 16-95 (101)
323 2e5g_A U6 snRNA-specific termi 99.6 3.2E-15 1.1E-19 113.4 10.7 79 19-103 4-82 (94)
324 2xs2_A Deleted in azoospermia- 99.6 3.3E-16 1.1E-20 121.1 5.0 80 304-385 8-87 (102)
325 3d2w_A TAR DNA-binding protein 99.6 1.2E-15 4.2E-20 114.0 7.9 76 303-386 9-86 (89)
326 2e5i_A Heterogeneous nuclear r 99.6 1.8E-15 6.2E-20 119.1 9.2 73 307-384 27-102 (124)
327 1fjc_A Nucleolin RBD2, protein 99.6 6.1E-16 2.1E-20 118.1 6.3 83 16-103 9-91 (96)
328 2cqh_A IGF-II mRNA-binding pro 99.6 4.5E-16 1.5E-20 118.1 5.2 75 303-383 6-82 (93)
329 3beg_B Splicing factor, argini 99.6 1.3E-15 4.4E-20 120.1 8.0 71 19-96 12-82 (115)
330 2pe8_A Splicing factor 45; RRM 99.6 3.5E-15 1.2E-19 114.7 10.2 82 302-383 5-93 (105)
331 2j8a_A Histone-lysine N-methyl 99.6 8.6E-16 2.9E-20 118.2 6.5 80 24-103 3-96 (136)
332 1wf1_A RNA-binding protein RAL 99.6 9.1E-16 3.1E-20 120.3 6.7 73 304-383 26-99 (110)
333 1x5p_A Negative elongation fac 99.6 2.3E-15 7.9E-20 115.0 8.7 74 303-383 13-86 (97)
334 3zzy_A Polypyrimidine tract-bi 99.6 5E-15 1.7E-19 116.9 10.6 82 19-105 24-108 (130)
335 3egn_A RNA-binding protein 40; 99.6 3.5E-16 1.2E-20 129.0 4.2 84 302-385 42-131 (143)
336 2cpd_A Apobec-1 stimulating pr 99.6 2.5E-15 8.6E-20 115.3 8.5 75 303-384 13-89 (99)
337 2xs2_A Deleted in azoospermia- 99.6 6.9E-16 2.3E-20 119.3 4.9 83 18-103 4-86 (102)
338 3beg_B Splicing factor, argini 99.6 1.9E-15 6.6E-20 119.1 7.4 70 305-380 16-85 (115)
339 2e5g_A U6 snRNA-specific termi 99.6 3.3E-15 1.1E-19 113.4 8.2 75 304-383 7-81 (94)
340 2e5i_A Heterogeneous nuclear r 99.6 1.5E-14 5.1E-19 113.9 12.1 75 24-104 26-103 (124)
341 2dnl_A Cytoplasmic polyadenyla 99.6 3.9E-15 1.3E-19 117.3 8.7 78 19-99 4-84 (114)
342 2cq2_A Hypothetical protein LO 99.6 4.5E-15 1.5E-19 114.4 7.6 79 19-103 21-106 (114)
343 2e44_A Insulin-like growth fac 99.6 3.1E-15 1.1E-19 114.2 6.7 78 304-384 14-92 (96)
344 2hzc_A Splicing factor U2AF 65 99.6 5.8E-15 2E-19 110.4 7.6 74 19-99 2-86 (87)
345 2pe8_A Splicing factor 45; RRM 99.6 1.3E-14 4.4E-19 111.5 9.5 83 20-102 5-93 (105)
346 2bz2_A Negative elongation fac 99.6 8.1E-15 2.8E-19 116.2 8.2 76 302-384 36-111 (121)
347 3pgw_S U1-70K; protein-RNA com 99.6 1.7E-15 5.9E-20 147.6 5.2 152 39-190 8-182 (437)
348 3egn_A RNA-binding protein 40; 99.6 1.7E-15 5.7E-20 125.0 4.1 83 18-103 40-130 (143)
349 2hzc_A Splicing factor U2AF 65 99.5 1E-14 3.5E-19 109.1 6.7 71 304-380 5-86 (87)
350 2voo_A Lupus LA protein; RNA-b 99.5 1.6E-14 5.5E-19 124.8 8.9 80 305-385 109-188 (193)
351 1wf0_A TDP-43, TAR DNA-binding 99.5 5.8E-15 2E-19 110.5 4.8 75 304-384 4-78 (88)
352 2dnl_A Cytoplasmic polyadenyla 99.5 1.4E-14 4.9E-19 114.0 7.3 75 304-381 7-85 (114)
353 2bz2_A Negative elongation fac 99.5 3.6E-14 1.2E-18 112.5 9.6 81 16-104 32-112 (121)
354 3u1l_A PRE-mRNA-splicing facto 99.5 1.1E-14 3.8E-19 128.2 7.2 81 303-388 132-233 (240)
355 3d2w_A TAR DNA-binding protein 99.5 2.4E-14 8.4E-19 106.9 7.7 77 18-103 6-84 (89)
356 2dit_A HIV TAT specific factor 99.5 1.1E-13 3.7E-18 108.5 11.4 89 14-106 6-105 (112)
357 1wf0_A TDP-43, TAR DNA-binding 99.5 9.8E-15 3.4E-19 109.3 5.1 79 20-105 2-80 (88)
358 3v4m_A Splicing factor U2AF 65 99.5 2.7E-14 9.1E-19 109.8 7.5 82 303-384 3-97 (105)
359 2voo_A Lupus LA protein; RNA-b 99.5 7.4E-14 2.5E-18 120.6 9.2 80 22-103 108-187 (193)
360 1jmt_A Splicing factor U2AF 35 99.5 9.4E-15 3.2E-19 112.3 3.0 72 310-381 20-103 (104)
361 3u1l_A PRE-mRNA-splicing facto 99.5 9.4E-14 3.2E-18 122.2 8.9 82 18-105 129-231 (240)
362 2dit_A HIV TAT specific factor 99.5 1.5E-13 5E-18 107.8 8.5 79 303-384 13-102 (112)
363 3ue2_A Poly(U)-binding-splicin 99.4 1.2E-13 4E-18 108.2 7.1 80 304-383 19-108 (118)
364 3v4m_A Splicing factor U2AF 65 99.4 2E-13 6.8E-18 104.9 7.5 83 21-103 3-97 (105)
365 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.3E-12 1.1E-16 96.6 12.9 81 18-105 5-92 (100)
366 3ue2_A Poly(U)-binding-splicin 99.4 4.8E-13 1.7E-17 104.7 7.9 82 21-102 18-108 (118)
367 1jmt_A Splicing factor U2AF 35 99.4 2.3E-13 7.8E-18 104.5 3.1 71 29-100 21-103 (104)
368 3s6e_A RNA-binding protein 39; 99.4 2.8E-12 9.5E-17 99.6 9.3 80 303-385 5-94 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 2.7E-12 9.3E-17 97.0 8.4 63 315-383 27-89 (100)
370 3tht_A Alkylated DNA repair pr 99.3 3.6E-12 1.2E-16 118.5 6.8 75 303-382 16-97 (345)
371 3s6e_A RNA-binding protein 39; 99.3 1E-11 3.4E-16 96.4 8.2 79 19-101 3-91 (114)
372 3tht_A Alkylated DNA repair pr 99.2 1.5E-11 5.2E-16 114.3 7.8 76 19-100 14-96 (345)
373 1owx_A Lupus LA protein, SS-B, 99.2 9.7E-11 3.3E-15 90.6 10.0 83 302-389 15-101 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 6.3E-11 2.1E-15 85.3 6.2 73 303-383 5-85 (91)
375 1owx_A Lupus LA protein, SS-B, 99.1 4.4E-10 1.5E-14 87.0 9.5 78 17-100 12-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 1.2E-09 4.1E-14 78.7 6.8 75 20-103 4-86 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 5.2E-10 1.8E-14 80.8 4.4 74 302-383 12-94 (95)
378 3dxb_A Thioredoxin N-terminall 98.8 3.4E-09 1.2E-13 94.1 6.9 68 317-384 141-213 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.7 7.1E-09 2.4E-13 74.9 4.5 73 19-100 11-92 (95)
380 2l9w_A U4/U6 snRNA-associated- 98.7 3.2E-08 1.1E-12 72.7 7.9 75 304-383 20-99 (117)
381 3dxb_A Thioredoxin N-terminall 98.7 4.2E-08 1.4E-12 87.0 10.2 83 21-103 122-213 (222)
382 2dhx_A Poly (ADP-ribose) polym 98.4 4E-06 1.4E-10 61.4 11.0 91 20-125 5-100 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.3 2.9E-06 1E-10 62.4 7.8 72 21-98 19-95 (117)
384 1wey_A Calcipressin 1; structu 97.9 1.6E-05 5.5E-10 58.6 5.5 73 305-382 5-82 (104)
385 1wey_A Calcipressin 1; structu 97.9 1.7E-05 5.7E-10 58.5 4.9 75 23-103 5-84 (104)
386 1uw4_A UPF3X; nonsense mediate 97.8 9.1E-05 3.1E-09 53.8 7.3 69 24-92 2-72 (91)
387 2dhx_A Poly (ADP-ribose) polym 97.6 0.00032 1.1E-08 51.3 8.3 69 304-380 7-80 (104)
388 1uw4_A UPF3X; nonsense mediate 97.5 0.00068 2.3E-08 49.2 8.5 68 306-373 2-72 (91)
389 1whv_A Poly(A)-specific ribonu 97.2 0.0012 4.1E-08 47.7 7.3 55 24-86 16-70 (100)
390 1wwh_A Nucleoporin 35, nucleop 97.0 0.0016 5.4E-08 49.5 6.7 73 19-99 20-93 (119)
391 3ctr_A Poly(A)-specific ribonu 96.9 0.00084 2.9E-08 48.7 4.1 54 25-86 7-60 (101)
392 1whv_A Poly(A)-specific ribonu 96.9 0.0022 7.6E-08 46.3 6.2 54 307-367 17-70 (100)
393 2l08_A Regulator of nonsense t 96.9 0.00082 2.8E-08 48.9 3.7 72 21-92 7-80 (97)
394 1wwh_A Nucleoporin 35, nucleop 96.7 0.0051 1.7E-07 46.8 6.9 72 305-383 24-96 (119)
395 3ctr_A Poly(A)-specific ribonu 96.7 0.0019 6.6E-08 46.8 4.3 53 308-367 8-60 (101)
396 2l08_A Regulator of nonsense t 96.6 0.0066 2.3E-07 44.2 6.6 68 306-373 10-80 (97)
397 3pq1_A Poly(A) RNA polymerase; 96.1 0.0026 9E-08 61.3 2.9 57 22-84 52-108 (464)
398 3p3d_A Nucleoporin 53; structu 95.7 0.0078 2.7E-07 46.4 3.5 76 307-384 9-99 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.1 0.01 3.6E-07 57.1 3.0 54 306-364 54-107 (464)
400 3p3d_A Nucleoporin 53; structu 95.0 0.027 9.1E-07 43.4 4.5 77 22-100 6-96 (132)
401 3d45_A Poly(A)-specific ribonu 86.6 1.8 6E-05 42.7 8.1 56 23-87 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 74.7 5.2 0.00018 39.4 6.6 53 308-367 442-494 (507)
403 4eyt_A Telomerase associated p 72.7 14 0.00047 25.8 6.3 71 304-381 11-88 (129)
404 2g0c_A ATP-dependent RNA helic 68.5 15 0.00053 25.0 6.2 59 34-101 12-75 (76)
405 2g0c_A ATP-dependent RNA helic 68.2 4.3 0.00015 27.9 3.2 60 315-382 11-75 (76)
406 3iot_A Maltose-binding protein 63.9 1.5 5.1E-05 42.6 0.1 8 124-131 128-135 (449)
407 3iot_A Maltose-binding protein 61.3 1.9 6.4E-05 41.9 0.3 6 40-45 20-25 (449)
408 4eyt_A Telomerase associated p 56.9 47 0.0016 23.1 7.8 58 20-85 9-66 (129)
409 4e8u_A Putative uncharacterize 43.2 38 0.0013 27.4 5.1 51 305-357 12-73 (172)
410 2inr_A DNA topoisomerase 4 sub 34.6 61 0.0021 31.5 6.0 98 23-134 275-375 (514)
411 2f06_A Conserved hypothetical 33.4 1.6E+02 0.0056 22.6 9.7 123 24-175 7-133 (144)
412 3fry_A Probable copper-exporti 31.0 76 0.0026 20.8 4.6 55 306-366 7-61 (73)
413 4e8u_A Putative uncharacterize 29.4 1E+02 0.0035 24.9 5.5 56 25-83 14-81 (172)
414 2lfv_A Protein DAMX; cell divi 32.8 14 0.00046 27.4 0.0 53 317-371 34-89 (106)
415 3lpe_A Putative transcription 26.5 1.7E+02 0.0059 20.6 7.1 47 36-87 21-72 (92)
416 3ilw_A DNA gyrase subunit A; D 22.4 66 0.0022 30.9 3.7 100 22-134 235-337 (470)
417 4bby_A Alkyldihydroxyacetoneph 22.1 45 0.0015 34.0 2.8 54 313-366 351-408 (658)
418 2yua_A Williams-beuren syndrom 21.8 41 0.0014 24.3 1.8 29 19-47 12-41 (99)
419 3j21_T 50S ribosomal protein L 21.3 2.2E+02 0.0074 20.0 5.4 57 26-85 25-83 (86)
420 3dxs_X Copper-transporting ATP 21.2 1.7E+02 0.0059 18.8 5.5 55 307-366 5-63 (74)
421 3lpx_A GYRA, DNA gyrase, A sub 20.7 89 0.003 30.1 4.2 99 22-134 225-326 (500)
422 1fme_A FSD-EY peptide; beta-BE 20.6 58 0.002 16.4 1.6 13 35-47 13-25 (28)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5.2e-44 Score=334.50 Aligned_cols=255 Identities=22% Similarity=0.337 Sum_probs=228.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
..+++|||+|||.++++++|+++|+.|| |.+|.+ ++++|||||+|.+.++|.+|++.|++..+.|+++.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4679999999999999999999999999 999988 456789999999999999999999999999999999986
Q ss_pred cCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCccCC
Q 010577 101 HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179 (507)
Q Consensus 101 ~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~ 179 (507)
..+ .+|+|+|||..+++++|+++|+.||.|..+.++.+. +|.++|+|||+|.+.++|.+|++.+++..+.|
T Consensus 93 ~~~--------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 93 PTD--------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CCS--------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCC--------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 533 689999999999999999999999999999999884 79999999999999999999999999999999
Q ss_pred ceeEEeeecccccchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHH
Q 010577 180 KQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARA 259 (507)
Q Consensus 180 ~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a 259 (507)
+.|.+.++.......
T Consensus 165 ~~i~v~~a~~~~~~~----------------------------------------------------------------- 179 (284)
T 3smz_A 165 RTLYVHWTDAGQLTP----------------------------------------------------------------- 179 (284)
T ss_dssp EECEEEECCGGGCCT-----------------------------------------------------------------
T ss_pred cEEEEEECCCCCCCc-----------------------------------------------------------------
Confidence 999998764321100
Q ss_pred HHHHcCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCC-CHHHHHhcccCCCCeeEEEEe
Q 010577 260 VEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSI-DDEKLKQLFSPFGSITSCKVM 338 (507)
Q Consensus 260 ~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~ 338 (507)
.....++|||+|||+.+ |+++|+++|+.||.|.+|++.
T Consensus 180 -----------------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~ 218 (284)
T 3smz_A 180 -----------------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLA 218 (284)
T ss_dssp -----------------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEE
T ss_pred -----------------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEE
Confidence 00234579999999995 999999999999999999999
Q ss_pred eCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhchHHHHHHHHHHHh
Q 010577 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFA 396 (507)
Q Consensus 339 ~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~ 396 (507)
.+.+|.++|+|||+|.+.++|.+|++.|||..++|+.|+|+|+.++..++.....+.+
T Consensus 219 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~a 276 (284)
T 3smz_A 219 CGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIA 276 (284)
T ss_dssp ECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHH
T ss_pred ECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhH
Confidence 9999999999999999999999999999999999999999999988777666555543
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.1e-43 Score=331.81 Aligned_cols=254 Identities=20% Similarity=0.368 Sum_probs=213.5
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
.....+.+++|||+|||.++++++|+++|+.||.|.+|.+..+... ++|||||+|.+.++|.+|++ +++..+.|+.+
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 4456788999999999999999999999999999999999997543 57999999999999999996 89999999999
Q ss_pred EeecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccC-ceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcC
Q 010577 96 RVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNG 174 (507)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~ 174 (507)
.|.++. .++|+|+|||..+++++|+++|+.|| .|..+.+..+..+.++|||||+|.+.++|..|++.|++
T Consensus 111 ~v~~~~---------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 111 IVSHLT---------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp EEEECC---------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred EEEECC---------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 998864 45899999999999999999999999 99999999988788999999999999999999999999
Q ss_pred CccCCceeEEeeecccccchhhhccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHH
Q 010577 175 MLLNDKQVYVGHFLRKQERDTEINKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSD 254 (507)
Q Consensus 175 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~ 254 (507)
..+.|+.|.|.++.........
T Consensus 182 ~~~~g~~l~v~~a~~~~~~~~~---------------------------------------------------------- 203 (292)
T 2ghp_A 182 LKIEGYTLVTKVSNPLEKSKRT---------------------------------------------------------- 203 (292)
T ss_dssp CEETTEECEEEECCCC----------------------------------------------------------------
T ss_pred CEeCCcEEEEEECCCCcccccc----------------------------------------------------------
Confidence 9999999999776432111000
Q ss_pred HHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCC-CCHHHHHhcccCCCCee
Q 010577 255 DAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDS-IDDEKLKQLFSPFGSIT 333 (507)
Q Consensus 255 ~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~ 333 (507)
.......++|||+|||.. +|+++|+++|+.||.|.
T Consensus 204 --------------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~ 239 (292)
T 2ghp_A 204 --------------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE 239 (292)
T ss_dssp -----------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE
T ss_pred --------------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCee
Confidence 001223567999999999 99999999999999999
Q ss_pred EEEEeeCCC--CCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 334 SCKVMRDPS--GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 334 ~~~~~~~~~--g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
+|++..+.. |.++|||||+|.+.++|.+|+ .|||..++|+.|.|.|+.++
T Consensus 240 ~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 240 KINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999886 999999999999999999999 99999999999999999764
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.2e-33 Score=249.80 Aligned_cols=176 Identities=62% Similarity=1.066 Sum_probs=159.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
...+.++++|||+|||+++++++|+++|++||.|.+|+++++..+++++|||||+|.+.++|.+|++.+++..+.|+.++
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCc
Q 010577 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (507)
Q Consensus 97 v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~ 176 (507)
+.++............+|||+|||+.+++++|+++|+.||.|..+.++.+. +.++|||||+|.+.++|.+|++.|++..
T Consensus 89 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 89 IMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp EEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred cccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 999988777777778899999999999999999999999999999999875 4479999999999999999999999999
Q ss_pred cCCceeEEeeecccccc
Q 010577 177 LNDKQVYVGHFLRKQER 193 (507)
Q Consensus 177 ~~~~~i~v~~~~~~~~~ 193 (507)
+.|+.|.|.++..+..+
T Consensus 168 ~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 168 LNDRKVFVGRFKSRKER 184 (213)
T ss_dssp ETTEECEEEECCCHHHH
T ss_pred ECCEEEEEEEcCCCccc
Confidence 99999999998765443
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=8.5e-32 Score=239.58 Aligned_cols=173 Identities=35% Similarity=0.533 Sum_probs=155.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccc
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~ 279 (507)
..++|||+|||.++++++|+++|++||.|.++.++++. ++.++|||||+|.+.++|..|+..+++..+.++.+.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45789999999999999999999999999999999986 58899999999999999999999999999999999998887
Q ss_pred cchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHH
Q 010577 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEA 359 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A 359 (507)
........ ...+|||+||++.+|+++|+++|+.||.|.+|+|+.+.. .++|||||+|.+.++|
T Consensus 94 ~~~~~~~~----------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 94 RDPSLRKS----------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAA 156 (213)
T ss_dssp CCTHHHHH----------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHH
T ss_pred cccccccc----------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHH
Confidence 65433221 235799999999999999999999999999999998864 4799999999999999
Q ss_pred HHHHHHhCCceecCcceeeehhhchHHHHHH
Q 010577 360 SRALLEMNGKMVVSKPLYVALAQRKEDRRAR 390 (507)
Q Consensus 360 ~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~~ 390 (507)
.+|++.|||..|+|+.|+|.+++++..+...
T Consensus 157 ~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~ 187 (213)
T 4f02_A 157 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 187 (213)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCHHHHHHH
T ss_pred HHHHHHhCCCEECCEEEEEEEcCCCcccchh
Confidence 9999999999999999999999987665543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.3e-31 Score=225.76 Aligned_cols=164 Identities=26% Similarity=0.526 Sum_probs=154.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 103 (507)
|+|||+|||.++++++|+++|++||.|.+|.+..+. .++++|||||+|.+.++|.+|++.|++..+.|+.++|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999986 4779999999999999999999999999999999999999888
Q ss_pred cccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeC-CCCCceeEEEEEECCHHHHHHHHHHhcCCccCCcee
Q 010577 104 PSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQV 182 (507)
Q Consensus 104 ~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i 182 (507)
.........+|+|+|||..+++++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|.+|++.|++..+.|+.|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 7777778889999999999999999999999999999999998 568999999999999999999999999999999999
Q ss_pred EEeeec
Q 010577 183 YVGHFL 188 (507)
Q Consensus 183 ~v~~~~ 188 (507)
.|.++.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 998764
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.5e-30 Score=223.27 Aligned_cols=164 Identities=29% Similarity=0.552 Sum_probs=152.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
++++|||+|||.++++++|+++|+.||.|.+|.+.++..++.++|||||+|.+.++|.+|++.|++..+.|++++|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57999999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCccCC-
Q 010577 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLND- 179 (507)
Q Consensus 102 ~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~- 179 (507)
.... .....+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.|++..+.|
T Consensus 82 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 82 PGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 6543 3456789999999999999999999999999999999986 78999999999999999999999999999977
Q ss_pred -ceeEEeee
Q 010577 180 -KQVYVGHF 187 (507)
Q Consensus 180 -~~i~v~~~ 187 (507)
+.|.|.++
T Consensus 160 ~~~l~V~~A 168 (168)
T 1b7f_A 160 SQPLSVRLA 168 (168)
T ss_dssp SSCCEEEEC
T ss_pred CeEEEEEeC
Confidence 88888653
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=3e-30 Score=221.23 Aligned_cols=163 Identities=33% Similarity=0.585 Sum_probs=150.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
++++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|+|||+|.+.++|.+|++.|++..+.|++++|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCccCCc
Q 010577 102 RDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDK 180 (507)
Q Consensus 102 ~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~ 180 (507)
.... .....+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.|++..+.|+
T Consensus 81 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 81 PSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCCG--GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 5543 2345789999999999999999999999999999999885 688999999999999999999999999999997
Q ss_pred e--eEEee
Q 010577 181 Q--VYVGH 186 (507)
Q Consensus 181 ~--i~v~~ 186 (507)
. |.|.+
T Consensus 159 ~~~i~v~~ 166 (167)
T 1fxl_A 159 TEPITVKF 166 (167)
T ss_dssp SSCCEEEE
T ss_pred ccceEEEe
Confidence 6 66654
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=2.9e-30 Score=231.21 Aligned_cols=171 Identities=24% Similarity=0.443 Sum_probs=154.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
...+++|||+|||.++++++|+++|+.||.|.+|.++++..+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999999988
Q ss_pred ccCCccc---------ccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHH
Q 010577 100 SHRDPSL---------RKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAI 169 (507)
Q Consensus 100 ~~~~~~~---------~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~ 169 (507)
+...... .....++|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHH
Confidence 7655322 22456799999999999999999999999999999999984 6889999999999999999999
Q ss_pred HHhcCCccCCceeEEeeeccc
Q 010577 170 EKLNGMLLNDKQVYVGHFLRK 190 (507)
Q Consensus 170 ~~l~~~~~~~~~i~v~~~~~~ 190 (507)
+.|++..+.|+.|.|.++...
T Consensus 185 ~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 185 SSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHTTCBCSSSBCEEEECSSC
T ss_pred HHccCCEeCCcEEEEEEecCC
Confidence 999999999999999987665
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=2.7e-30 Score=227.72 Aligned_cols=178 Identities=25% Similarity=0.431 Sum_probs=152.8
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
+.....+..+++|||+|||+++++++|+++|+.||.|.+|.++.+..++.++|||||+|.+.++|.+|++. ++..+.|+
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 4 SESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp ----CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred ccCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 34555677899999999999999999999999999999999999988999999999999999999999986 88899999
Q ss_pred ceEeecccCCcccc----cCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHH
Q 010577 94 PIRVMYSHRDPSLR----KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKA 168 (507)
Q Consensus 94 ~~~v~~~~~~~~~~----~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A 168 (507)
.+.|.++....... ....++|+|+|||.++++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|
T Consensus 83 ~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 83 VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp ECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred EeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 99999886543322 2345789999999999999999999999999999999985 689999999999999999999
Q ss_pred HHHhcCCccCCceeEEeeecccccc
Q 010577 169 IEKLNGMLLNDKQVYVGHFLRKQER 193 (507)
Q Consensus 169 ~~~l~~~~~~~~~i~v~~~~~~~~~ 193 (507)
++. ++..+.|+.|.|.++..+...
T Consensus 163 ~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 163 VIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHC-SCCEETTEECEEEECC-----
T ss_pred HHh-CCcEECCEEEEEEecCChhHh
Confidence 985 799999999999988776543
No 10
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-30 Score=220.90 Aligned_cols=164 Identities=32% Similarity=0.512 Sum_probs=151.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccch
Q 010577 203 TNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKS 282 (507)
Q Consensus 203 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~ 282 (507)
++|||+|||.++++++|+++|++||.|.++.+..+.++.++|+|||+|.+.++|..|+..+++..+.++.+.+.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 46999999999999999999999999999999999888899999999999999999999999999999999999886543
Q ss_pred HHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHH
Q 010577 283 ERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASR 361 (507)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~ 361 (507)
. ......++|||+|||..+|+++|+++|+.||.|.++++..+. +|.++|+|||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 2 123356789999999999999999999999999999999985 88999999999999999999
Q ss_pred HHHHhCCceecCcceeeehhh
Q 010577 362 ALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 362 a~~~~~~~~~~g~~i~v~~~~ 382 (507)
|++.|||..++|+.|+|+|++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHTTCEETTEECEEEESC
T ss_pred HHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999986
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.4e-29 Score=218.90 Aligned_cols=165 Identities=25% Similarity=0.411 Sum_probs=146.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHcCCCCCC---CcceE
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSNAQEAARALEMLNFTPLN---GKPIR 96 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~~~ 96 (507)
.+++|||+|||+++++++|+++|++||.|.+|+++++..++ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 89999999999999999999999987765 56677
Q ss_pred eecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCc
Q 010577 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (507)
Q Consensus 97 v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~ 176 (507)
+.++..... .....++|+|+|||..+|+++|+++|+.||.|.++.+..+.+|.++|+|||+|.+.++|.+|++.|++..
T Consensus 82 ~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Ecccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 766554322 2234678999999999999999999999999999999999889999999999999999999999999987
Q ss_pred cC---CceeEEeee
Q 010577 177 LN---DKQVYVGHF 187 (507)
Q Consensus 177 ~~---~~~i~v~~~ 187 (507)
+. ++.|.|.++
T Consensus 161 ~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 161 TMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCCCCeEEEec
Confidence 76 389998765
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.7e-29 Score=226.31 Aligned_cols=177 Identities=24% Similarity=0.424 Sum_probs=153.8
Q ss_pred CccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeecc
Q 010577 200 SKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKA 278 (507)
Q Consensus 200 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~ 278 (507)
...++|||+|||.++++++|+++|+.||.|.++.++.+. ++.++|||||+|.+.++|..|++.+++..+.++.+.+.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 345789999999999999999999999999999998876 6889999999999999999999999999999999999888
Q ss_pred ccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHH
Q 010577 279 QKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPE 357 (507)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~ 357 (507)
............ ........++|||+|||.++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.+
T Consensus 106 ~~~~~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 106 SNIGQAQPIIDQ-------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp SCCGGGHHHHHH-------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCccccchhhhh-------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 765433222111 11223456789999999999999999999999999999999996 8899999999999999
Q ss_pred HHHHHHHHhCCceecCcceeeehhhc
Q 010577 358 EASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 358 ~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
+|.+|++.|||..|+|+.|+|.|+.+
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecC
Confidence 99999999999999999999999863
No 13
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=1.7e-29 Score=222.52 Aligned_cols=177 Identities=24% Similarity=0.458 Sum_probs=148.3
Q ss_pred cCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeec
Q 010577 199 KSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (507)
Q Consensus 199 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~ 277 (507)
....++|||+|||.++++++|+++|+.||.|.++.++.+. ++.++|||||+|.+.++|..|+.. ++..+.++.+.+.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 4456789999999999999999999999999999999886 588999999999999999999965 88899999999998
Q ss_pred cccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCH
Q 010577 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTP 356 (507)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~ 356 (507)
+........ .......++|||+|||+++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.
T Consensus 89 ~~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 89 AVSREDSQR------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp CCC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ccCcccccc------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 865433211 1122345789999999999999999999999999999999997 889999999999999
Q ss_pred HHHHHHHHHhCCceecCcceeeehhhchHHHHH
Q 010577 357 EEASRALLEMNGKMVVSKPLYVALAQRKEDRRA 389 (507)
Q Consensus 357 ~~A~~a~~~~~~~~~~g~~i~v~~~~~~~~~~~ 389 (507)
++|.+|++. +|..++|+.|.|.++.++.....
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 999999976 89999999999999987766544
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=3.9e-29 Score=214.31 Aligned_cols=162 Identities=35% Similarity=0.609 Sum_probs=149.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeecccc
Q 010577 202 FTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (507)
Q Consensus 202 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~ 280 (507)
+++|||+|||.++++++|+++|+.||.|.++.+..+. ++.++|+|||+|.+.++|..|+..+++..+.++.+.+.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4689999999999999999999999999999999987 788999999999999999999999999999999999998875
Q ss_pred chHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHH
Q 010577 281 KSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEA 359 (507)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A 359 (507)
... ....++|||+|||..+++++|+++|+.||.|.++++..+. +|.++|+|||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 432 2245689999999999999999999999999999999987 888999999999999999
Q ss_pred HHHHHHhCCceecCcc--eeeehh
Q 010577 360 SRALLEMNGKMVVSKP--LYVALA 381 (507)
Q Consensus 360 ~~a~~~~~~~~~~g~~--i~v~~~ 381 (507)
.+|++.|||..+.|+. |+|+||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999975 788775
No 15
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=2e-29 Score=216.30 Aligned_cols=163 Identities=34% Similarity=0.563 Sum_probs=150.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccc
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~ 279 (507)
.+++|||+|||.++++++|+++|+.||.|.++.+..+. ++.++|+|||+|.+.++|..|+..+++..+.++.+.+.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999998875 68899999999999999999999999999999999999887
Q ss_pred cchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHH
Q 010577 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~ 358 (507)
.... ....++|+|+|||..+++++|+++|+.||.|.++++..+. +|.++|+|||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 82 PGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp CCSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCcc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 5432 2345789999999999999999999999999999999997 88999999999999999
Q ss_pred HHHHHHHhCCceecC--cceeeehh
Q 010577 359 ASRALLEMNGKMVVS--KPLYVALA 381 (507)
Q Consensus 359 A~~a~~~~~~~~~~g--~~i~v~~~ 381 (507)
|.+|++.|||..+.| ++|+|+||
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999988 99999886
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=5e-30 Score=219.77 Aligned_cols=165 Identities=22% Similarity=0.482 Sum_probs=149.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
+++++|||+|||.++++++|+++|+.||.|.+|.++++..++.++|||||+|.+.++|.+|++. ...+.|+.+.+.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999999988999999999999999999999994 56789999999877
Q ss_pred cCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCccCC
Q 010577 101 HRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLND 179 (507)
Q Consensus 101 ~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~ 179 (507)
..... ....++|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++ +++..+.|
T Consensus 79 ~~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 79 IPRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CCHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred cchhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 64422 2345689999999999999999999999999999999884 68999999999999999999998 89999999
Q ss_pred ceeEEeeeccc
Q 010577 180 KQVYVGHFLRK 190 (507)
Q Consensus 180 ~~i~v~~~~~~ 190 (507)
+.|.|.++.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999887653
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=4.9e-29 Score=215.44 Aligned_cols=165 Identities=28% Similarity=0.506 Sum_probs=145.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCC---CccceEEEEeCCHHHHHHHHHHHcCCCCC---Cceee
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDG---KSKCFGFVNFENSDDAARAVEALNGKKFD---DKEWY 274 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~---~~~~~ 274 (507)
..++|||+|||.++++++|+++|++||.|.++.+.++..+ .++|||||+|.+.++|..|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4578999999999999999999999999999999988765 78999999999999999999999998765 45666
Q ss_pred eeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeC
Q 010577 275 VGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS 354 (507)
Q Consensus 275 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~ 354 (507)
+.++..... .....++|||+|||..+|+++|+++|+.||.|.+|++..+.+|.++|||||+|.
T Consensus 82 ~~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred Ecccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 655543221 122456899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCceec---Ccceeeehhh
Q 010577 355 TPEEASRALLEMNGKMVV---SKPLYVALAQ 382 (507)
Q Consensus 355 ~~~~A~~a~~~~~~~~~~---g~~i~v~~~~ 382 (507)
+.++|.+|++.|||..+. +++|+|+||+
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999998776 4999999974
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=5.6e-29 Score=213.22 Aligned_cols=163 Identities=25% Similarity=0.485 Sum_probs=146.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECC-CCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccc
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDG-DGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~ 279 (507)
.+++|||+|||.++++++|+++|+.||.|.++.+.++. ++.++|||||+|.+.++|..|+. ++..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 35789999999999999999999999999999998885 68899999999999999999997 4567889999888876
Q ss_pred cchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHH
Q 010577 280 KKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEE 358 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~ 358 (507)
..... ...++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++
T Consensus 80 ~~~~~------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 80 PRDEQ------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp CHHHH------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred chhhc------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 53321 124579999999999999999999999999999999986 79999999999999999
Q ss_pred HHHHHHHhCCceecCcceeeehhhch
Q 010577 359 ASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 359 A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
|.+|++ +++..++|+.|.|.|+.++
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999997 8999999999999999764
No 19
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.2e-29 Score=219.06 Aligned_cols=168 Identities=23% Similarity=0.343 Sum_probs=149.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
......+++|||+|||.++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++ |++..+.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 84 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 84 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEE
Confidence 457788999999999999999999999999987666 233444578899999999999999999995 999999999999
Q ss_pred eecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCc
Q 010577 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGML 176 (507)
Q Consensus 97 v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~ 176 (507)
|.++...........++|+|+|||..+++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|++.|++..
T Consensus 85 v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 85 LEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE 160 (175)
T ss_dssp EECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEE
T ss_pred EecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCE
Confidence 999987766666677899999999999999999999999988665 5678899999999999999999999999999
Q ss_pred cCCceeEEeeeccc
Q 010577 177 LNDKQVYVGHFLRK 190 (507)
Q Consensus 177 ~~~~~i~v~~~~~~ 190 (507)
+.|+.|.|.++..+
T Consensus 161 ~~g~~i~v~~a~~k 174 (175)
T 1fje_B 161 IDGRSVSLYYTGEK 174 (175)
T ss_dssp ETTEEEEEEECSSC
T ss_pred ECCeEEEEEecCCC
Confidence 99999999887543
No 20
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=2.5e-28 Score=210.25 Aligned_cols=158 Identities=25% Similarity=0.523 Sum_probs=143.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCC
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~----G-------~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 89 (507)
+.+++|||+|||.++++++|+++|+.| | .|.++.+.+ ++|||||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 468999999999999999999999999 6 777777643 4679999999999999999 799999
Q ss_pred CCCcceEeecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHH
Q 010577 90 LNGKPIRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKA 168 (507)
Q Consensus 90 ~~g~~~~v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A 168 (507)
+.|++++|.++..... .....+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|
T Consensus 75 ~~g~~i~v~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP--LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp ETTEECEEECCSSCCC--CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred ecCceeeecCCcccCC--CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 9999999998765432 3446899999999999999999999999999999999995 799999999999999999999
Q ss_pred HHHhcCCccCCceeEEeee
Q 010577 169 IEKLNGMLLNDKQVYVGHF 187 (507)
Q Consensus 169 ~~~l~~~~~~~~~i~v~~~ 187 (507)
++.|++..+.|+.|.|.++
T Consensus 153 ~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHHTTCEETTEECEEEEC
T ss_pred HHHcCCCEECCeEEEEEeC
Confidence 9999999999999999875
No 21
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=4.5e-28 Score=226.08 Aligned_cols=164 Identities=23% Similarity=0.431 Sum_probs=146.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
....++++|||+|||.++++++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 456789999999999999999977 8999999999999876 678899999999999999999999999999999
Q ss_pred ceEeecccCCcc--------------------------------------------------------------------
Q 010577 94 PIRVMYSHRDPS-------------------------------------------------------------------- 105 (507)
Q Consensus 94 ~~~v~~~~~~~~-------------------------------------------------------------------- 105 (507)
.|+|.++.....
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 999998865432
Q ss_pred -----------------------------------------cccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEe
Q 010577 106 -----------------------------------------LRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVA 144 (507)
Q Consensus 106 -----------------------------------------~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~ 144 (507)
......++|||+|||..+++++|+++|+.||.|.+|++.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 011134679999999999999999999999999999999
Q ss_pred eCCCCCceeEEEEEECCHHHHHHHHHHhcCCccC-CceeEEeeec
Q 010577 145 TDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFL 188 (507)
Q Consensus 145 ~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~-~~~i~v~~~~ 188 (507)
.+ .+|+|||+|.+.++|.+|++.|++..+. |+.|.|.++.
T Consensus 241 ~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PG----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cC----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 65 3589999999999999999999999999 9999998864
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=2.4e-28 Score=214.39 Aligned_cols=154 Identities=17% Similarity=0.289 Sum_probs=135.2
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 22 GTTSLYVGDLE-ANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 22 ~~~~l~V~nLp-~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
.+++|||+||| ..+++++|+++|+.||.|.+|+++++ .+|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999765 3589999999999999999999999999999999988
Q ss_pred cCCcccc-----------------------------------cCCCCcEEEcCCCcccChHHHHhhhhccCce--eEEEE
Q 010577 101 HRDPSLR-----------------------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNI--LSCKV 143 (507)
Q Consensus 101 ~~~~~~~-----------------------------------~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v--~~v~~ 143 (507)
+...... ....++|+|+|||+++|+++|+++|+.||.| .++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6321100 0124579999999999999999999999999 89998
Q ss_pred eeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCce
Q 010577 144 ATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQ 181 (507)
Q Consensus 144 ~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~ 181 (507)
..+. +..+|+|||+|.+.++|.+|+..|++..+.++.
T Consensus 158 ~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 158 FSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 8775 445699999999999999999999999998773
No 23
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=6.8e-28 Score=225.08 Aligned_cols=174 Identities=22% Similarity=0.320 Sum_probs=159.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
..+++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCCccc-ccCCCCcEEEcCCCccc-ChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccC
Q 010577 101 HRDPSL-RKSGAGNIFIKNLDKAI-DHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN 178 (507)
Q Consensus 101 ~~~~~~-~~~~~~~v~v~nLp~~~-t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~ 178 (507)
...... .....++|+|+|||..+ ++++|+++|+.||.|.++.+..+.+|.++|+|||+|.+.++|.+|++.|++..+.
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 765432 23456789999999995 9999999999999999999999989999999999999999999999999999999
Q ss_pred CceeEEeeecccccch
Q 010577 179 DKQVYVGHFLRKQERD 194 (507)
Q Consensus 179 ~~~i~v~~~~~~~~~~ 194 (507)
|+.|.|.++.++..+.
T Consensus 253 g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 253 GSHLRVSFCAPGPPGR 268 (284)
T ss_dssp TEECEEEECCSSSCHH
T ss_pred CeEEEEEEecCCCccc
Confidence 9999999987765543
No 24
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=4.2e-28 Score=213.98 Aligned_cols=163 Identities=25% Similarity=0.495 Sum_probs=143.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCC
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~----G-------~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 89 (507)
+.+++|||+|||.++++++|+++|+.| | .|.++.+ ++++|||||+|.+.++|.+|+ .||+..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 468999999999999999999999999 5 6666655 345689999999999999999 799999
Q ss_pred CCCcceEeecccCCcccc------------------cCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCC-CCC
Q 010577 90 LNGKPIRVMYSHRDPSLR------------------KSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDL-NGQ 150 (507)
Q Consensus 90 ~~g~~~~v~~~~~~~~~~------------------~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~ 150 (507)
+.|+.|+|.++....... ....++|+|+|||..+++++|+++|+.||.|..+.+..+. ++.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 999999999876542211 1456899999999999999999999999999999999995 789
Q ss_pred ceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeeccc
Q 010577 151 SKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (507)
Q Consensus 151 ~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~ 190 (507)
++|+|||+|.+.++|.+|++.|++..+.|+.|.|.++..+
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999999999999999999999999999999987654
No 25
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1.1e-27 Score=215.66 Aligned_cols=167 Identities=22% Similarity=0.304 Sum_probs=146.7
Q ss_pred CCCCCCCCCCceEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 14 GGANANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
+........+++|||+|||. ++++++|+++|+.||.|.+|++..+. +|||||+|.+.++|.+|++.|++..|.|
T Consensus 25 ~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 25 AIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp CCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34445567889999999999 99999999999999999999998864 5799999999999999999999999999
Q ss_pred cceEeecccCCccc---------------------------------ccCCCCcEEEcCCCcccChHHHHhhhhccC-ce
Q 010577 93 KPIRVMYSHRDPSL---------------------------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NI 138 (507)
Q Consensus 93 ~~~~v~~~~~~~~~---------------------------------~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G-~v 138 (507)
+.|+|.++...... .....++|+|+|||..+++++|+++|+.|| .|
T Consensus 100 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i 179 (229)
T 2adc_A 100 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 179 (229)
T ss_dssp SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCE
T ss_pred eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCe
Confidence 99999988643100 012257899999999999999999999999 99
Q ss_pred eEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccC-CceeEEeeecc
Q 010577 139 LSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFLR 189 (507)
Q Consensus 139 ~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~-~~~i~v~~~~~ 189 (507)
..+.++.+ ++|+|||+|.+.++|.+|++.|++..+. |+.|.|.++..
T Consensus 180 ~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 180 KGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred eEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99999764 4789999999999999999999999999 99999988754
No 26
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=9.4e-28 Score=206.67 Aligned_cols=158 Identities=23% Similarity=0.466 Sum_probs=141.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhccc----C-------CeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCC
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 269 (507)
..++|||+|||.++++++|+++|++| | .|.++.+. .++|||||+|.+.++|..|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 35789999999999999999999999 6 66666665 44889999999999999999 89999999
Q ss_pred CceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcce
Q 010577 270 DKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGS 348 (507)
Q Consensus 270 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~ 348 (507)
++.+.+.++..... ....++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|+
T Consensus 77 g~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp TEECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred CceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 99999988754321 1235689999999999999999999999999999999996 8999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 349 GFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 349 afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
|||+|.+.++|.+|++.|||..++|+.|.|+||.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999999999873
No 27
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=3.3e-27 Score=216.73 Aligned_cols=163 Identities=26% Similarity=0.476 Sum_probs=146.8
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
+.......+++|||+|||.++++++|+++|+.||.|.+|.+.+ ++|||||+|.+.++|.+|+..|++..+.|+.
T Consensus 14 p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 14 PGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp TTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 3455567889999999999999999999999999999999954 3579999999999999999999999999999
Q ss_pred eEeecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhc-
Q 010577 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLN- 173 (507)
Q Consensus 95 ~~v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~- 173 (507)
|+|.++.. ..+|+|+|||..+|+++|+++|+.||.|..|.++.+.+|.++|+|||+|.+.++|.+|++.++
T Consensus 88 l~v~~a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 88 LRIRFATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp CEEEECCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eEeeeccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 99999875 368999999999999999999999999999999999889999999999999999999999995
Q ss_pred CCccC---CceeEEeeecccc
Q 010577 174 GMLLN---DKQVYVGHFLRKQ 191 (507)
Q Consensus 174 ~~~~~---~~~i~v~~~~~~~ 191 (507)
+..+. ++.+.|.++....
T Consensus 160 ~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 160 GAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp SCEESSSSCCBCEEEECCCEE
T ss_pred CeEEecCCCceEEEeeccccC
Confidence 44444 8999998876543
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=5.4e-28 Score=212.10 Aligned_cols=176 Identities=17% Similarity=0.204 Sum_probs=140.8
Q ss_pred ccceEEEcCCC-CCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccc
Q 010577 201 KFTNVYVKNLS-ESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQ 279 (507)
Q Consensus 201 ~~~~l~v~~lp-~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~ 279 (507)
.+.+|||+||+ ..+++++|+++|++||.|.++.++++ .+|||||+|.+.++|..|++.|++..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 35689999999 89999999999999999999998764 37899999999999999999999999999999999875
Q ss_pred cchHHHHH---H-------hH-------HHHHh--hHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCe--eEEEEe
Q 010577 280 KKSERELE---L-------KH-------QFEQN--MKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSI--TSCKVM 338 (507)
Q Consensus 280 ~~~~~~~~---~-------~~-------~~~~~--~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v--~~~~~~ 338 (507)
........ . .. ..... ........++++|||+|||+++|+++|+++|+.||.| .+|+++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 43210000 0 00 00000 0000012346789999999999999999999999999 899998
Q ss_pred eCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCc----ceeeehh
Q 010577 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK----PLYVALA 381 (507)
Q Consensus 339 ~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~----~i~v~~~ 381 (507)
.+. +.++|+|||+|.+.++|.+|+..|||..+.|+ ++.|+|+
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 876 55679999999999999999999999999876 5666654
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=2.8e-27 Score=220.72 Aligned_cols=178 Identities=22% Similarity=0.374 Sum_probs=146.7
Q ss_pred cCccceEEEcCCCCCCCHHHHH----HHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceee
Q 010577 199 KSKFTNVYVKNLSESTTEEDLQ----KSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWY 274 (507)
Q Consensus 199 ~~~~~~l~v~~lp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~ 274 (507)
...+++|||+||+.++++++|+ ++|++||.|.++.+.+ ++.++|||||+|.+.++|..|+..+++..+.++.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3456789999999999999976 8999999999998876 667899999999999999999999999999999999
Q ss_pred eeccccchHHHHHHhHHHH-----------------HhhH----------------------------------------
Q 010577 275 VGKAQKKSERELELKHQFE-----------------QNMK---------------------------------------- 297 (507)
Q Consensus 275 v~~~~~~~~~~~~~~~~~~-----------------~~~~---------------------------------------- 297 (507)
|.++............... ....
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 9998654421110000000 0000
Q ss_pred ------------------------------------HhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC
Q 010577 298 ------------------------------------EAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP 341 (507)
Q Consensus 298 ------------------------------------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 341 (507)
.......+++|||+||+.++|+++|+++|+.||.|.+|++..+.
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 00122245789999999999999999999999999999999763
Q ss_pred CCCCcceEEEEeCCHHHHHHHHHHhCCceec-Ccceeeehhh
Q 010577 342 SGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQ 382 (507)
Q Consensus 342 ~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~-g~~i~v~~~~ 382 (507)
+|||||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 244 ----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 579999999999999999999999999 9999999986
No 30
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=2.2e-28 Score=211.17 Aligned_cols=166 Identities=22% Similarity=0.374 Sum_probs=143.1
Q ss_pred ccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeec
Q 010577 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (507)
Q Consensus 198 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~ 277 (507)
.....++|||+|||.++++++|+++|+.||.+..+.+....++.++|||||+|.+.++|..|+ .+++..+.++.+.+.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 345668899999999999999999999998765533333345778999999999999999999 5999999999999999
Q ss_pred cccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHH
Q 010577 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357 (507)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~ 357 (507)
+...... .....++|||+|||..+|+++|+++|+.||.|..+ ..+|.++|||||+|.+.+
T Consensus 88 ~~~~~~~----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~ 147 (175)
T 1fje_B 88 PKGRDSK----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEA 147 (175)
T ss_dssp CCCSSCS----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHH
T ss_pred CCCcccc----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHH
Confidence 8754321 11234689999999999999999999999988766 667889999999999999
Q ss_pred HHHHHHHHhCCceecCcceeeehhhch
Q 010577 358 EASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 358 ~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
+|.+|++.|||..+.|+.|+|+|+.++
T Consensus 148 ~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 148 DAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999999999754
No 31
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.6e-27 Score=208.74 Aligned_cols=159 Identities=23% Similarity=0.336 Sum_probs=141.7
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 22 GTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 22 ~~~~l~V~nLp~-~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
.+++|||+|||. ++++++|+++|+.||.|.+|++..+. +|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998764 579999999999999999999999999999999988
Q ss_pred cCCccc---------------------------------ccCCCCcEEEcCCCcccChHHHHhhhhccC-ceeEEEEeeC
Q 010577 101 HRDPSL---------------------------------RKSGAGNIFIKNLDKAIDHKALHDTFSAFG-NILSCKVATD 146 (507)
Q Consensus 101 ~~~~~~---------------------------------~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G-~v~~v~~~~~ 146 (507)
...... .....++|+|+|||..+++++|+++|+.|| .|..+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 643110 012367899999999999999999999999 9999999765
Q ss_pred CCCCceeEEEEEECCHHHHHHHHHHhcCCccC-CceeEEeeecc
Q 010577 147 LNGQSKGYGFVQFDNEESAQKAIEKLNGMLLN-DKQVYVGHFLR 189 (507)
Q Consensus 147 ~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~-~~~i~v~~~~~ 189 (507)
.+|+|||+|.+.++|.+|++.|++..+. |+.|.|.++..
T Consensus 157 ----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 4789999999999999999999999999 99999988654
No 32
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=3e-27 Score=221.67 Aligned_cols=167 Identities=21% Similarity=0.369 Sum_probs=146.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
.+++|||+|||.++++++|+++|+.|| .|..|.+..+.. +.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999998865 788999999999999999999999999999999999998
Q ss_pred cCCccc-----ccCCCCcEEEcCCCcc-cChHHHHhhhhccCceeEEEEeeCCC--CCceeEEEEEECCHHHHHHHHHHh
Q 010577 101 HRDPSL-----RKSGAGNIFIKNLDKA-IDHKALHDTFSAFGNILSCKVATDLN--GQSKGYGFVQFDNEESAQKAIEKL 172 (507)
Q Consensus 101 ~~~~~~-----~~~~~~~v~v~nLp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~--~~~~g~a~v~f~~~e~A~~A~~~l 172 (507)
...... .....++|+|+|||.. +++++|+++|+.||.|..+.+..+.. +.++|+|||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 755433 2335688999999999 99999999999999999999999876 899999999999999999999 99
Q ss_pred cCCccCCceeEEeeeccc
Q 010577 173 NGMLLNDKQVYVGHFLRK 190 (507)
Q Consensus 173 ~~~~~~~~~i~v~~~~~~ 190 (507)
++..+.|+.|.|.++.++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999987654
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=4.5e-27 Score=211.53 Aligned_cols=178 Identities=21% Similarity=0.293 Sum_probs=146.2
Q ss_pred ccCccceEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeee
Q 010577 198 NKSKFTNVYVKNLSE-STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVG 276 (507)
Q Consensus 198 ~~~~~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~ 276 (507)
....+++|||+|||. ++++++|+++|++||.|.++.+..+. +|||||+|.+.++|..|++.+++..+.++.+.|.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678899999999 99999999999999999999998764 6799999999999999999999999999999999
Q ss_pred ccccchHHHHHHhHH-----------------HHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCC-CeeEEEEe
Q 010577 277 KAQKKSERELELKHQ-----------------FEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVM 338 (507)
Q Consensus 277 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~ 338 (507)
++............. ............+.++|||+|||.++++++|+++|+.|| .|.+|+++
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 886432100000000 000000011123468899999999999999999999999 99999997
Q ss_pred eCCCCCCcceEEEEeCCHHHHHHHHHHhCCceec-Ccceeeehhhc
Q 010577 339 RDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383 (507)
Q Consensus 339 ~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~-g~~i~v~~~~~ 383 (507)
.+ .+|+|||+|.+.++|.+|++.|||..+. |+.|+|+|+++
T Consensus 186 ~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 186 QK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 64 4789999999999999999999999999 99999999975
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=2.4e-26 Score=210.99 Aligned_cols=158 Identities=30% Similarity=0.508 Sum_probs=144.1
Q ss_pred ccCccceEEEcCCCCCCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeec
Q 010577 198 NKSKFTNVYVKNLSESTTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGK 277 (507)
Q Consensus 198 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~ 277 (507)
.....++|||+|||.++|+++|+++|+.||.|..+.+.+ ++|||||+|.+.++|..|+..+++..+.++.+.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345667899999999999999999999999999999863 478999999999999999999999999999999998
Q ss_pred cccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHH
Q 010577 278 AQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357 (507)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~ 357 (507)
+.. +++|||+|||..+|+++|+++|+.||.|.+|++..+.+|+++|||||+|.+.+
T Consensus 93 a~~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 148 (261)
T 3sde_A 93 ATH------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKP 148 (261)
T ss_dssp CCC------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHH
T ss_pred ccc------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHH
Confidence 853 45799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-Cceec---Ccceeeehhhch
Q 010577 358 EASRALLEMN-GKMVV---SKPLYVALAQRK 384 (507)
Q Consensus 358 ~A~~a~~~~~-~~~~~---g~~i~v~~~~~~ 384 (507)
+|.+|++.|| +..+. +++|.|.++...
T Consensus 149 ~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 149 PARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 9999999995 44544 999999998643
No 35
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=1.4e-26 Score=204.21 Aligned_cols=178 Identities=21% Similarity=0.380 Sum_probs=144.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHhccc----C-------CeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCC
Q 010577 201 KFTNVYVKNLSESTTEEDLQKSFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFD 269 (507)
Q Consensus 201 ~~~~l~v~~lp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 269 (507)
.+++|||+|||.++++++|+++|+.| | .|..+.+. .++|||||+|.+.++|..|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 35789999999999999999999999 5 55555553 55899999999999999999 89999999
Q ss_pred CceeeeeccccchHHHHHHhHHH--HHhhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCc
Q 010577 270 DKEWYVGKAQKKSERELELKHQF--EQNMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISR 346 (507)
Q Consensus 270 ~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~ 346 (507)
++.+.+.++.............. .............++|||+|||+++++++|+++|+.||.|.+|++..+. +|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 99999998765321100000000 0000011112456889999999999999999999999999999999997 89999
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 347 GSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 347 g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
|||||+|.+.++|.+|++.|||..++|+.|+|.|++++
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999999999999999999999999754
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=3.9e-26 Score=201.15 Aligned_cols=174 Identities=22% Similarity=0.304 Sum_probs=143.0
Q ss_pred cceEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeecccc
Q 010577 202 FTNVYVKNLSE-STTEEDLQKSFGEYGTITSAVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQK 280 (507)
Q Consensus 202 ~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~ 280 (507)
+++|||+|||. ++++++|+++|+.||.|.++.+..+. +|||||+|.+.++|..|+..+++..+.++.+.+.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 46899999999 99999999999999999999988764 67999999999999999999999999999999998764
Q ss_pred chHHHHHHhHHHHH-----------------hhHHhhhccCCcceEEecCCCCCCHHHHHhcccCCC-CeeEEEEeeCCC
Q 010577 281 KSERELELKHQFEQ-----------------NMKEAADKFQGANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPS 342 (507)
Q Consensus 281 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~ 342 (507)
.............. .........++++|||+|||..+|+++|+++|+.|| .|.+|++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 32110000000000 000000123467899999999999999999999999 9999999775
Q ss_pred CCCcceEEEEeCCHHHHHHHHHHhCCceec-Ccceeeehhhc
Q 010577 343 GISRGSGFVAFSTPEEASRALLEMNGKMVV-SKPLYVALAQR 383 (507)
Q Consensus 343 g~~~g~afv~f~~~~~A~~a~~~~~~~~~~-g~~i~v~~~~~ 383 (507)
.+|+|||+|.+.++|.+|++.|||..++ |+.|+|.|+++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 3789999999999999999999999999 99999999875
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=5.1e-21 Score=151.40 Aligned_cols=104 Identities=29% Similarity=0.508 Sum_probs=74.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
.+++|||+|||+++++++|+++|+.||.|.+|+|+.+. +.++|||||+|.+.++|.+|++.|++..+.|++|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46789999999999999999999999999999999984 4578999999999999999999999999999999999886
Q ss_pred CCccc------ccCCCCcEEEcCCCcccChHH
Q 010577 102 RDPSL------RKSGAGNIFIKNLDKAIDHKA 127 (507)
Q Consensus 102 ~~~~~------~~~~~~~v~v~nLp~~~t~~~ 127 (507)
..... ......+|||+|||+++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 54322 122345799999999999864
No 38
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=7.8e-21 Score=145.45 Aligned_cols=82 Identities=38% Similarity=0.641 Sum_probs=78.1
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
...+++|||+|||.++|+++|+++|+.||.|.+|++.++. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred hhc
Q 010577 381 AQR 383 (507)
Q Consensus 381 ~~~ 383 (507)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 976
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=2.1e-21 Score=163.83 Aligned_cols=146 Identities=21% Similarity=0.264 Sum_probs=108.7
Q ss_pred EEEEECCCCCccceEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEe
Q 010577 232 AVVMRDGDGKSKCFGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIK 311 (507)
Q Consensus 232 ~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 311 (507)
+.++.+.. .++||+||+|.+.++|++|+..+++....+..+.+........... ..............++|||+
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-----GSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-----CCCCSSCCCCCCBCCEEEEE
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-----cccccccccCCCCCCEEEEe
Confidence 34444443 6899999999999999999988775433333332221110000000 00000011112346789999
Q ss_pred cCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 312 NLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 312 ~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
|||+++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+++
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 999999999999999999999999999996 899999999999999999999999999999999999999975
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=141.11 Aligned_cols=84 Identities=39% Similarity=0.599 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
.....++|||+|||.++++++|+++|++||.|.+|++.++..+++++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 010577 99 YSHR 102 (507)
Q Consensus 99 ~~~~ 102 (507)
++++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9864
No 41
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=141.61 Aligned_cols=91 Identities=14% Similarity=0.267 Sum_probs=82.9
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
.+.++|||+||++++|+++|+++|++||.|.+|+|..+. +|+++|||||+|++.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999998 6999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHH
Q 010577 382 QRKEDRRARLQA 393 (507)
Q Consensus 382 ~~~~~~~~~~~~ 393 (507)
.....+....+.
T Consensus 84 ~~~~~~~~~~~~ 95 (110)
T 3s8s_A 84 IKGQQRMKYYEL 95 (110)
T ss_dssp STTHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 877665554333
No 42
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=3.2e-19 Score=150.33 Aligned_cols=138 Identities=15% Similarity=0.303 Sum_probs=108.9
Q ss_pred EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCC-CCCc------ceEeeccc----CCcccccCCCCcEEEcCCC
Q 010577 52 SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP-LNGK------PIRVMYSH----RDPSLRKSGAGNIFIKNLD 120 (507)
Q Consensus 52 ~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g~------~~~v~~~~----~~~~~~~~~~~~v~v~nLp 120 (507)
.+++..+. ..++|||||+|.+.++|.+|+..+++.. +.|. ........ ...........+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 35566653 3688999999999999999998876422 2221 11111111 1112223446799999999
Q ss_pred cccChHHHHhhhhccCceeEEEEeeCC-CCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecccc
Q 010577 121 KAIDHKALHDTFSAFGNILSCKVATDL-NGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRKQ 191 (507)
Q Consensus 121 ~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~~ 191 (507)
+++++++|+++|+.||.|..|.+..+. ++.++|||||+|.+.++|..|++.|++..+.|+.|.|.++....
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999999984 79999999999999999999999999999999999999887543
No 43
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=2e-20 Score=156.08 Aligned_cols=138 Identities=20% Similarity=0.308 Sum_probs=111.2
Q ss_pred CCccceEEEEeCCHHHHHHHHHHH-cCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCC
Q 010577 240 GKSKCFGFVNFENSDDAARAVEAL-NGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSID 318 (507)
Q Consensus 240 ~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~ 318 (507)
...+|+++++|.+.++|++|+..+ ++..++| .+.+.++........... ..............++|||+|||+++|
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH--HHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS--SCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc--cccccccccCCCCCCEEEEeCCCCCCC
Confidence 356889999999999999999999 9999999 999887754221100000 000001112233567899999999999
Q ss_pred HHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 319 DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 319 ~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
+++|+++|+.||.|.+|++..+ ++|||||+|.+.++|.+|++.|||..+.|+.|+|+|++++
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999887 6899999999999999999999999999999999998754
No 44
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=134.98 Aligned_cols=93 Identities=25% Similarity=0.439 Sum_probs=85.4
Q ss_pred CCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCC
Q 010577 9 QNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (507)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 88 (507)
.+.+.+.........++|||+|||.++++++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|.+|++.||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 81 (94)
T 2e5h_A 2 SSGSSGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK 81 (94)
T ss_dssp CCCCCCCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 34455666677788999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CCCCcceEeeccc
Q 010577 89 PLNGKPIRVMYSH 101 (507)
Q Consensus 89 ~~~g~~~~v~~~~ 101 (507)
.|.|++|+|.+++
T Consensus 82 ~~~g~~l~v~~ak 94 (94)
T 2e5h_A 82 QLFGRVIKASIAI 94 (94)
T ss_dssp EETTEEEEEEECC
T ss_pred eeCCcEEEEEecC
Confidence 9999999998864
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=7.5e-19 Score=137.04 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=79.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
+.+.++|||+|||+++++++|+++|++||.|.+|+++.+..+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 010577 100 SHRD 103 (507)
Q Consensus 100 ~~~~ 103 (507)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 46
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=135.53 Aligned_cols=86 Identities=17% Similarity=0.396 Sum_probs=79.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCC--EEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCC----CC
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ--VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT----PL 90 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~--v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~----~~ 90 (507)
........||||+|||+++|+++|+++|++||. |.+|++.+|+.+++++|||||+|.+.++|.+|++.||+. .+
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 456788999999999999999999999999994 679999999999999999999999999999999999986 48
Q ss_pred CCcceEeecccC
Q 010577 91 NGKPIRVMYSHR 102 (507)
Q Consensus 91 ~g~~~~v~~~~~ 102 (507)
+|++|.|.++++
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999875
No 47
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=8.7e-19 Score=146.06 Aligned_cols=125 Identities=19% Similarity=0.255 Sum_probs=110.5
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHc-CCCCCCCcceEeecccCC--------------cccccCCCCcEEEcCCCcccCh
Q 010577 61 TRRSLGYGYVNFSNAQEAARALEML-NFTPLNGKPIRVMYSHRD--------------PSLRKSGAGNIFIKNLDKAIDH 125 (507)
Q Consensus 61 ~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~~~v~~~~~~--------------~~~~~~~~~~v~v~nLp~~~t~ 125 (507)
....+|+++|+|.+.++|++|++.+ |+..+.| .+.+.++... ........++|||+|||+++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 3467899999999999999999999 9999999 9999887642 1223345689999999999999
Q ss_pred HHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeeccc
Q 010577 126 KALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLRK 190 (507)
Q Consensus 126 ~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~~ 190 (507)
++|+++|+.||.|.+|.+..+ ++|||||+|.+.++|..|++.|++..+.|+.|.|.++..+
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999999876 6899999999999999999999999999999999887543
No 48
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=134.63 Aligned_cols=93 Identities=29% Similarity=0.511 Sum_probs=85.0
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
+........+++|||+|||.++++++|+++|+.||.|..|.+..+..++.++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 3 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 3 SGSSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CSCCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 33445667889999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ceEeecccCCccc
Q 010577 94 PIRVMYSHRDPSL 106 (507)
Q Consensus 94 ~~~v~~~~~~~~~ 106 (507)
+|+|.++......
T Consensus 83 ~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 83 QIRVDQAGKSSDN 95 (102)
T ss_dssp CCEEEEEECCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999998866544
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=135.84 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=73.8
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCC--eeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCc----eecCcce
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGS--ITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGK----MVVSKPL 376 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~----~~~g~~i 376 (507)
...+|||+|||+++|+++|+++|++||. |.+|++.+|+ +|+++|||||+|.+.++|.+|++.|||. .++||.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999995 6799999987 7999999999999999999999999986 5899999
Q ss_pred eeehhhc
Q 010577 377 YVALAQR 383 (507)
Q Consensus 377 ~v~~~~~ 383 (507)
.|+||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 50
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-18 Score=133.54 Aligned_cols=94 Identities=31% Similarity=0.566 Sum_probs=86.4
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.+........+++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.||+..|.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 5 SSGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp SSCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 34556677789999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cceEeecccCCccc
Q 010577 93 KPIRVMYSHRDPSL 106 (507)
Q Consensus 93 ~~~~v~~~~~~~~~ 106 (507)
++|+|.++......
T Consensus 85 ~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 85 KPIRVNKASAHNKN 98 (105)
T ss_dssp CBCEEEETTTTSCC
T ss_pred eEEEEEECCCCCcC
Confidence 99999998876543
No 51
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=132.30 Aligned_cols=91 Identities=31% Similarity=0.421 Sum_probs=84.6
Q ss_pred CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
+.+........+++|||+|||.++++++|+++|+.||.|..|.+..+..+++++|||||+|.+.++|.+|++.||+..+.
T Consensus 4 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 4 GSSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCCCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34556667788999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CcceEeecccC
Q 010577 92 GKPIRVMYSHR 102 (507)
Q Consensus 92 g~~~~v~~~~~ 102 (507)
|++|+|.+++.
T Consensus 84 g~~l~v~~a~~ 94 (95)
T 2cqc_A 84 GRRIRVSGPSS 94 (95)
T ss_dssp TEEEEEECCSC
T ss_pred CEEEEEEecCC
Confidence 99999998764
No 52
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-18 Score=131.28 Aligned_cols=91 Identities=22% Similarity=0.480 Sum_probs=83.4
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
........+++|||+|||.++++++|+++|+.||.|.+|.++.+..++.++|||||+|.+.++|.+|++ |++..|.|++
T Consensus 2 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 80 (99)
T 2dgs_A 2 SSGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK 80 (99)
T ss_dssp CCCCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence 345566788999999999999999999999999999999999998899999999999999999999999 8999999999
Q ss_pred eEeecccCCccc
Q 010577 95 IRVMYSHRDPSL 106 (507)
Q Consensus 95 ~~v~~~~~~~~~ 106 (507)
|+|.++......
T Consensus 81 l~V~~a~~~~~~ 92 (99)
T 2dgs_A 81 VEVKRAEPRDSK 92 (99)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEECCCCccc
Confidence 999998866443
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=135.36 Aligned_cols=82 Identities=26% Similarity=0.419 Sum_probs=76.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcC-CCCCCCcceEeecc
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN-FTPLNGKPIRVMYS 100 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-~~~~~g~~~~v~~~ 100 (507)
+++|||+|||.++++++|+++|+.|| .|.+|++++++.++.++|||||+|.+.++|.+|++.++ +..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999999774 56799999999998
Q ss_pred cCCc
Q 010577 101 HRDP 104 (507)
Q Consensus 101 ~~~~ 104 (507)
...+
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7653
No 54
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-19 Score=136.11 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=73.2
Q ss_pred cceEEecCCCCCCHHHHHhcccCCC-CeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHh-CCceecCcceeeehhh
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEM-NGKMVVSKPLYVALAQ 382 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~-~~~~~~g~~i~v~~~~ 382 (507)
++|||+|||.++|+++|+++|+.|| .|.+|+++++. +|.++|||||+|.+.++|.+|++.+ ++..++|+.|+|+|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 89999999987 7999999999999999999999887 4567999999999997
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
++
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=133.15 Aligned_cols=92 Identities=20% Similarity=0.398 Sum_probs=84.8
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
+........+++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 6 SGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp CCSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 34455677899999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ceEeecccCCcc
Q 010577 94 PIRVMYSHRDPS 105 (507)
Q Consensus 94 ~~~v~~~~~~~~ 105 (507)
+|+|.++.....
T Consensus 86 ~l~v~~a~~~~~ 97 (103)
T 2cq0_A 86 ILNVEWAKPSTN 97 (103)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999886643
No 56
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=4.4e-18 Score=134.90 Aligned_cols=95 Identities=28% Similarity=0.552 Sum_probs=87.1
Q ss_pred CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
+.+.........++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.||+..|.
T Consensus 4 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 4 GSSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp SCCSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34556667788999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CcceEeecccCCccc
Q 010577 92 GKPIRVMYSHRDPSL 106 (507)
Q Consensus 92 g~~~~v~~~~~~~~~ 106 (507)
|+.|+|.++......
T Consensus 84 g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 84 GRQIRTNWATRKPPA 98 (115)
T ss_dssp TEECEEEESSCCCCC
T ss_pred CEEEEEEEccCCCCC
Confidence 999999998866544
No 57
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.4e-18 Score=131.47 Aligned_cols=94 Identities=28% Similarity=0.513 Sum_probs=85.3
Q ss_pred CCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC
Q 010577 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (507)
Q Consensus 11 ~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 90 (507)
.+...........++|||+|||+++++++|+++|+.||.|.+|.+..+ ++.++|||||+|.+.++|.+|++.||+..|
T Consensus 3 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2d9p_A 3 SGSSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 80 (103)
T ss_dssp CCCCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 344556667779999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred CCcceEeecccCCccc
Q 010577 91 NGKPIRVMYSHRDPSL 106 (507)
Q Consensus 91 ~g~~~~v~~~~~~~~~ 106 (507)
.|++|+|.++......
T Consensus 81 ~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 81 ATKPLYVALAQRKEER 96 (103)
T ss_dssp SSSBCEEEECSSCCCC
T ss_pred CCcEEEEEEecccccC
Confidence 9999999998876443
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=3.1e-18 Score=137.89 Aligned_cols=90 Identities=32% Similarity=0.437 Sum_probs=83.8
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
.........+++|||+|||.++++++|+++|++||.|.+|++..+..+++++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 37 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 37 VGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34455667889999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ceEeecccCC
Q 010577 94 PIRVMYSHRD 103 (507)
Q Consensus 94 ~~~v~~~~~~ 103 (507)
+|+|.++...
T Consensus 117 ~l~V~~a~~~ 126 (129)
T 2kxn_B 117 RIRVDFSITK 126 (129)
T ss_dssp CCEESCCSSS
T ss_pred EEEEEEecCC
Confidence 9999998765
No 59
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=132.70 Aligned_cols=92 Identities=23% Similarity=0.403 Sum_probs=84.9
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
+........+++|||+|||.++++++|+++|+.||.|..|.+..+..++.++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 4 GSSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CCCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 44555667889999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ceEeecccCCcc
Q 010577 94 PIRVMYSHRDPS 105 (507)
Q Consensus 94 ~~~v~~~~~~~~ 105 (507)
.|+|.++.....
T Consensus 84 ~l~V~~a~~~~~ 95 (103)
T 2dnm_A 84 ELRVQVARYGRR 95 (103)
T ss_dssp CCEEEECSSCCS
T ss_pred EEEEEECCcCCC
Confidence 999999986643
No 60
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.76 E-value=1.8e-18 Score=136.68 Aligned_cols=108 Identities=62% Similarity=1.027 Sum_probs=74.7
Q ss_pred CCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCCccCCceeEEeeecc
Q 010577 110 GAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGHFLR 189 (507)
Q Consensus 110 ~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~~~~~~~i~v~~~~~ 189 (507)
+.++|||+|||+++++++|+++|+.||.|.+|+++.+. +.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 35689999999999999999999999999999999885 44799999999999999999999999999999999998876
Q ss_pred cccchhh--hccCccceEEEcCCCCCCCHHH
Q 010577 190 KQERDTE--INKSKFTNVYVKNLSESTTEED 218 (507)
Q Consensus 190 ~~~~~~~--~~~~~~~~l~v~~lp~~~t~~~ 218 (507)
+..+... ......++|||+||+.++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 5443322 2234456799999999998763
No 61
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=130.81 Aligned_cols=88 Identities=20% Similarity=0.348 Sum_probs=82.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
....+++|||+|||.++++++|+++|+.||.|.+|.+..+..+++++|||||+|.+.++|.+|++.||+..|.|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cccCCccc
Q 010577 99 YSHRDPSL 106 (507)
Q Consensus 99 ~~~~~~~~ 106 (507)
++......
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 98876543
No 62
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.4e-18 Score=131.81 Aligned_cols=94 Identities=21% Similarity=0.454 Sum_probs=85.9
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEec-CCCCCcccEEEEEeCCHHHHHHHHHHc-CCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRD-LSTRRSLGYGYVNFSNAQEAARALEML-NFTPL 90 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~ 90 (507)
.+........+++|||+|||.++++++|+++|+.||.|.+|.+..+ ..++.++|||||+|.+.++|.+|++.| |+..|
T Consensus 5 s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 5 SSGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp CCCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 3455667788999999999999999999999999999999999998 778999999999999999999999999 99999
Q ss_pred CCcceEeecccCCccc
Q 010577 91 NGKPIRVMYSHRDPSL 106 (507)
Q Consensus 91 ~g~~~~v~~~~~~~~~ 106 (507)
.|++|+|.++......
T Consensus 85 ~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 85 YGRRLVLEWADSEVTV 100 (107)
T ss_dssp SSCBCEEEECCCCCCC
T ss_pred CCCEEEEEeCCCCCCC
Confidence 9999999999876544
No 63
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=8.6e-18 Score=128.27 Aligned_cols=86 Identities=37% Similarity=0.620 Sum_probs=80.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
+..+++|||+|||.++++++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|.+|++.||+..+.|++|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 010577 100 SHRDPS 105 (507)
Q Consensus 100 ~~~~~~ 105 (507)
+.....
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 876543
No 64
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=6.4e-19 Score=132.78 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=71.5
Q ss_pred cceEEecCCCCCCHHHHHhcccCCC--CeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
.+|||+|||+++|+++|+++|+.|| .|.+|++..+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 99999999996 89999999999999999999999999999999999999997
Q ss_pred chH
Q 010577 383 RKE 385 (507)
Q Consensus 383 ~~~ 385 (507)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 643
No 65
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=133.51 Aligned_cols=92 Identities=28% Similarity=0.446 Sum_probs=84.3
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
.........++|||+|||.++++++|+++|+.||.|.+|.+..+..+++++|||||+|.+.++|.+|++.||+..|.|++
T Consensus 4 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 4 GSSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CSSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CcCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34445668899999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred eEeecccCCccc
Q 010577 95 IRVMYSHRDPSL 106 (507)
Q Consensus 95 ~~v~~~~~~~~~ 106 (507)
|+|.++......
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2cqb_A 84 IRVNLAKPMRIK 95 (102)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999998866443
No 66
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=1.1e-18 Score=155.34 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=78.3
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCC--CeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
..++|||+||++++|+++|+++|+.|| .|++|+|+.+. +|+++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 99999999996 899999999999999999999999999999999999999
Q ss_pred hhchHHHH
Q 010577 381 AQRKEDRR 388 (507)
Q Consensus 381 ~~~~~~~~ 388 (507)
+++.....
T Consensus 147 a~~~~~~~ 154 (229)
T 3q2s_C 147 VNKQFLSQ 154 (229)
T ss_dssp CCHHHHHH
T ss_pred CCCCccch
Confidence 98765543
No 67
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.6e-18 Score=124.72 Aligned_cols=76 Identities=24% Similarity=0.414 Sum_probs=70.8
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
+..|+|+||++.+|+++|+++|.+||.|.++++.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|++|...
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~ 81 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSEN 81 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHH
Confidence 45699999999999999999999999999999965 5899999999999999999999999999999999999543
Q ss_pred H
Q 010577 385 E 385 (507)
Q Consensus 385 ~ 385 (507)
+
T Consensus 82 ~ 82 (89)
T 2wbr_A 82 E 82 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=2.7e-18 Score=128.11 Aligned_cols=83 Identities=30% Similarity=0.492 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
....+++|||+|||.++++++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred ccc
Q 010577 99 YSH 101 (507)
Q Consensus 99 ~~~ 101 (507)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 864
No 69
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=129.16 Aligned_cols=81 Identities=28% Similarity=0.550 Sum_probs=75.3
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
+.++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45689999999999999999999999999999999986 88999999999999999999999999999999999999997
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 54
No 70
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=2.9e-18 Score=135.95 Aligned_cols=106 Identities=20% Similarity=0.374 Sum_probs=94.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
++..+++|||+|||.++++++|+++|+.||.|.+|.+..+ +.++|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3556789999999999999999999999999999999865 4568999999999999999999999999999999999
Q ss_pred cccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCc
Q 010577 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGN 137 (507)
Q Consensus 99 ~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~ 137 (507)
++...... .+++...++++|.++|+.||-
T Consensus 81 ~a~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 98755333 577888999999999999983
No 71
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=3e-18 Score=127.25 Aligned_cols=79 Identities=37% Similarity=0.615 Sum_probs=75.4
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
.+|||+|||.++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|+|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 579999999999999999999999999999999985 8899999999999999999999999999999999999999764
No 72
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.1e-18 Score=129.41 Aligned_cols=89 Identities=18% Similarity=0.313 Sum_probs=82.3
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
..........++|||+|||.++++++|+++|+.||.|.+|.+..+. +++++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 8 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 8 VFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp CCCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CcCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4445566788999999999999999999999999999999999997 899999999999999999999999999999999
Q ss_pred ceEeecccCC
Q 010577 94 PIRVMYSHRD 103 (507)
Q Consensus 94 ~~~v~~~~~~ 103 (507)
+|+|.++...
T Consensus 87 ~l~v~~a~~~ 96 (100)
T 2do4_A 87 IIKVAISNSG 96 (100)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999998765
No 73
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=130.89 Aligned_cols=89 Identities=31% Similarity=0.571 Sum_probs=78.6
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.+.........++|||+|||.++++++|+++|+.||.|.+|.+..+.. ++++|||||+|.+.++|.+|++.||+..+.|
T Consensus 6 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 6 SGMFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp ------CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344556677889999999999999999999999999999999999875 8999999999999999999999999999999
Q ss_pred cceEeecccC
Q 010577 93 KPIRVMYSHR 102 (507)
Q Consensus 93 ~~~~v~~~~~ 102 (507)
++|+|.+++.
T Consensus 85 ~~l~V~~a~~ 94 (95)
T 2ywk_A 85 RPINVSGPSS 94 (95)
T ss_dssp EECEEECCCC
T ss_pred CEEEEEEcCC
Confidence 9999998763
No 74
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=128.24 Aligned_cols=84 Identities=30% Similarity=0.540 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
..++++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.||+..+.|++|+|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ccCC
Q 010577 100 SHRD 103 (507)
Q Consensus 100 ~~~~ 103 (507)
+...
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8753
No 75
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=129.17 Aligned_cols=94 Identities=26% Similarity=0.408 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC
Q 010577 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (507)
Q Consensus 11 ~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 90 (507)
.+.+.........++|||+|||.++++++|+++|+.||.|.+|.+..+.. .++|||||+|.+.++|.+|++.||+..|
T Consensus 3 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cq3_A 3 SGSSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV 80 (103)
T ss_dssp SCCCCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34566677788899999999999999999999999999999999998753 4889999999999999999999999999
Q ss_pred CCcceEeecccCCccc
Q 010577 91 NGKPIRVMYSHRDPSL 106 (507)
Q Consensus 91 ~g~~~~v~~~~~~~~~ 106 (507)
.|++|+|.++......
T Consensus 81 ~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 81 EGRKIEVNNATARVMT 96 (103)
T ss_dssp TTEECEEEECCSSCCC
T ss_pred CCEEEEEEEcccCCCC
Confidence 9999999998866443
No 76
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.7e-18 Score=133.35 Aligned_cols=93 Identities=26% Similarity=0.377 Sum_probs=85.1
Q ss_pred CCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC
Q 010577 11 VNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (507)
Q Consensus 11 ~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 90 (507)
.+.......+...++|||+|||.++++++|+++|+.||.|.+|++..++.+++++|||||+|.+.++|.+|++.+++ .|
T Consensus 5 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~ 83 (116)
T 2cqd_A 5 SSGMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II 83 (116)
T ss_dssp CCCCCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE
T ss_pred CCCCCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC
Confidence 34455667778899999999999999999999999999999999999988999999999999999999999999998 89
Q ss_pred CCcceEeecccCCc
Q 010577 91 NGKPIRVMYSHRDP 104 (507)
Q Consensus 91 ~g~~~~v~~~~~~~ 104 (507)
.|++|+|.++....
T Consensus 84 ~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 84 DGRKANVNLAYLGA 97 (116)
T ss_dssp TTEECEEEESTTTC
T ss_pred CCEEEEEEEcccCC
Confidence 99999999987653
No 77
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=132.19 Aligned_cols=95 Identities=25% Similarity=0.382 Sum_probs=86.6
Q ss_pred CCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCC
Q 010577 10 NVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (507)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 89 (507)
..+.+.........++|||+|||+++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++. ++..
T Consensus 3 ~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~ 81 (105)
T 2dh8_A 3 SGSSGMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHT 81 (105)
T ss_dssp SSCCCCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEE
T ss_pred CCCCCCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCe
Confidence 344566677788999999999999999999999999999999999999988999999999999999999999998 9999
Q ss_pred CCCcceEeecccCCcc
Q 010577 90 LNGKPIRVMYSHRDPS 105 (507)
Q Consensus 90 ~~g~~~~v~~~~~~~~ 105 (507)
|.|++|+|.++.....
T Consensus 82 ~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 82 LDGRNIDPKPCTPRGM 97 (105)
T ss_dssp ETTEEEBCCCSCCSSC
T ss_pred ECCEEEEEEEccCCCC
Confidence 9999999999876543
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=131.50 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=76.5
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+|||+++|+++|+++|+.||.|.+|++..+..|+++|||||+|.+.++|.+|++ +++..++|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 3468999999999999999999999999999999999889999999999999999999998 899999999999999876
Q ss_pred hHH
Q 010577 384 KED 386 (507)
Q Consensus 384 ~~~ 386 (507)
...
T Consensus 89 ~~~ 91 (103)
T 1s79_A 89 YFA 91 (103)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 79
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=131.79 Aligned_cols=82 Identities=21% Similarity=0.458 Sum_probs=78.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||.++|+++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
++
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 80
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=7.1e-18 Score=133.64 Aligned_cols=90 Identities=23% Similarity=0.343 Sum_probs=82.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
.......++|||+|||.++++++|+++|+.||.|.+|++..+..+++++|||||+|.+.++|.+|++.||+..|.|++|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34445779999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred eecccCCccc
Q 010577 97 VMYSHRDPSL 106 (507)
Q Consensus 97 v~~~~~~~~~ 106 (507)
|.++......
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9998866443
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=131.36 Aligned_cols=91 Identities=19% Similarity=0.331 Sum_probs=83.8
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcC------CC
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN------FT 88 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~------~~ 88 (507)
........+++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.|| +.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 7 GLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 344566788999999999999999999999999999999999998899999999999999999999999999 99
Q ss_pred CCCCcceEeecccCCcc
Q 010577 89 PLNGKPIRVMYSHRDPS 105 (507)
Q Consensus 89 ~~~g~~~~v~~~~~~~~ 105 (507)
.|.|++|+|.++.....
T Consensus 87 ~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 87 KLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp ESSSCEEEEECCCCCCC
T ss_pred EEcCEEEEEEECCCCcc
Confidence 99999999999876543
No 82
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=9.7e-18 Score=128.90 Aligned_cols=88 Identities=23% Similarity=0.406 Sum_probs=82.1
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~--------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 85 (507)
..........++|||+|||.++++++|+++|++||.|.+ |.+..++.+++++|||||+|.+.++|.+|++.|
T Consensus 4 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 4 HHHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp SCSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 345567788999999999999999999999999999999 999999889999999999999999999999999
Q ss_pred CCCCCCCcceEeeccc
Q 010577 86 NFTPLNGKPIRVMYSH 101 (507)
Q Consensus 86 ~~~~~~g~~~~v~~~~ 101 (507)
|+..+.|++|+|.+++
T Consensus 84 ~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 84 DGKEFSGNPIKVSFAT 99 (99)
T ss_dssp TTCBSSSSBCEEEECC
T ss_pred CCCEeCCcEEEEEecC
Confidence 9999999999998763
No 83
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=129.64 Aligned_cols=80 Identities=35% Similarity=0.652 Sum_probs=76.3
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++|||+|||.++|+++|+++|+.||.|.+|++..+. +++++|||||+|.+.++|.+|++.|||..++|+.|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56789999999999999999999999999999999987 68999999999999999999999999999999999999997
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 84 ~ 84 (95)
T 2dnz_A 84 E 84 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 84
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=3.3e-18 Score=130.69 Aligned_cols=82 Identities=24% Similarity=0.410 Sum_probs=77.4
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
+++|||+|||.++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5689999999999999999999999999999999986 789999999999999999999999999999999999999986
Q ss_pred hHH
Q 010577 384 KED 386 (507)
Q Consensus 384 ~~~ 386 (507)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 544
No 85
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=9.4e-18 Score=137.94 Aligned_cols=94 Identities=28% Similarity=0.372 Sum_probs=86.1
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
...........++|||+|||.++++++|+++|+.||.|.+|++..+..+++++|||||+|.+.++|.+|++.||+..|.|
T Consensus 32 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 32 PTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp SSCSSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34455677788999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cceEeecccCCccc
Q 010577 93 KPIRVMYSHRDPSL 106 (507)
Q Consensus 93 ~~~~v~~~~~~~~~ 106 (507)
++|+|.++......
T Consensus 112 ~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 112 KRLKVALAASGHQR 125 (139)
T ss_dssp CEEEEEESSCCCCC
T ss_pred eEEEEEECCCCCCC
Confidence 99999998866443
No 86
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.4e-18 Score=133.51 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=77.2
Q ss_pred CcceEEecCCC------CCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecC-cce
Q 010577 305 GANLYIKNLDD------SIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KPL 376 (507)
Q Consensus 305 ~~~l~v~~l~~------~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g-~~i 376 (507)
.++|||+|||+ ++++++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 46899999999 99999999999999999999999998 59999999999999999999999999999999 999
Q ss_pred eeehhhchHH
Q 010577 377 YVALAQRKED 386 (507)
Q Consensus 377 ~v~~~~~~~~ 386 (507)
+|.++.+.+.
T Consensus 86 ~V~~a~~~~~ 95 (100)
T 3ns6_A 86 FLYTMKDVER 95 (100)
T ss_dssp EEEESHHHHH
T ss_pred EEEECchhhh
Confidence 9999986544
No 87
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-17 Score=131.36 Aligned_cols=90 Identities=28% Similarity=0.393 Sum_probs=82.6
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.+........+++|||+|||.++++++|+++|+.||.|.+|.+..+. +++++|||||+|.+.++|.+|++.||+..|.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 5 SSGALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCCCCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34555667789999999999999999999999999999999999986 58999999999999999999999999999999
Q ss_pred cceEeecccCC
Q 010577 93 KPIRVMYSHRD 103 (507)
Q Consensus 93 ~~~~v~~~~~~ 103 (507)
+.|+|.++...
T Consensus 84 ~~l~v~~a~~~ 94 (114)
T 2do0_A 84 RPMHVKMDERA 94 (114)
T ss_dssp EECEEEECSCC
T ss_pred CEEEEEEcccC
Confidence 99999998754
No 88
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=6.1e-18 Score=129.21 Aligned_cols=83 Identities=27% Similarity=0.484 Sum_probs=79.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
++++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 47899999999999999999999999999999999998889999999999999999999999999999999999999988
Q ss_pred CCc
Q 010577 102 RDP 104 (507)
Q Consensus 102 ~~~ 104 (507)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 664
No 89
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=4.1e-18 Score=122.66 Aligned_cols=77 Identities=23% Similarity=0.282 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
+.+.+..|+|+||++.++|++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 3 ~~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 3 MAWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CCCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 456799999999999999999999999999999999865 57899999999999999999999999999999997
Q ss_pred ccc
Q 010577 99 YSH 101 (507)
Q Consensus 99 ~~~ 101 (507)
++.
T Consensus 77 ~A~ 79 (89)
T 2wbr_A 77 SPS 79 (89)
T ss_dssp CCC
T ss_pred ECC
Confidence 663
No 90
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.3e-17 Score=129.23 Aligned_cols=92 Identities=24% Similarity=0.376 Sum_probs=83.5
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.+.........++|||+|||.++++++|+++|+.|| |.+|.+..+..+++++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 5 SSGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp CCCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 344556677889999999999999999999999997 999999999989999999999999999999999 799999999
Q ss_pred cceEeecccCCccc
Q 010577 93 KPIRVMYSHRDPSL 106 (507)
Q Consensus 93 ~~~~v~~~~~~~~~ 106 (507)
++|+|.++......
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 83 RSLRVDIAEGRKQD 96 (103)
T ss_dssp EECEEEECCCCCCC
T ss_pred eEEEEEEecCCCCC
Confidence 99999998865443
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=4.8e-18 Score=135.37 Aligned_cols=84 Identities=26% Similarity=0.372 Sum_probs=78.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
......++|||+|||.++++++|+++|++||.|.+|++..+..+++++|||||+|.+.++|.+|++.||+..|.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566799999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eccc
Q 010577 98 MYSH 101 (507)
Q Consensus 98 ~~~~ 101 (507)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 8764
No 92
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=8.2e-18 Score=124.85 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=77.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccC
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHR 102 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~ 102 (507)
+.+|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.||+..+.|++|+|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred C
Q 010577 103 D 103 (507)
Q Consensus 103 ~ 103 (507)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-18 Score=130.96 Aligned_cols=78 Identities=18% Similarity=0.385 Sum_probs=71.3
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhC--CceecCcceeee
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN--GKMVVSKPLYVA 379 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~--~~~~~g~~i~v~ 379 (507)
..+.++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|++.++|.+|++.++ +..+.|+.|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345678999999999999999999999999999999875 7899999999999999999886 478999999999
Q ss_pred hhhch
Q 010577 380 LAQRK 384 (507)
Q Consensus 380 ~~~~~ 384 (507)
|++.+
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 99754
No 94
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.9e-18 Score=131.04 Aligned_cols=90 Identities=24% Similarity=0.340 Sum_probs=82.5
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
+........+++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 14 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 14 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp -CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 34445566789999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred ceEeecccCC
Q 010577 94 PIRVMYSHRD 103 (507)
Q Consensus 94 ~~~v~~~~~~ 103 (507)
+|+|.++...
T Consensus 94 ~l~V~~a~~~ 103 (106)
T 1p27_B 94 PISVDWCFVR 103 (106)
T ss_dssp BCEEEESEES
T ss_pred EEEEEeecCC
Confidence 9999988654
No 95
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.8e-18 Score=129.88 Aligned_cols=87 Identities=29% Similarity=0.495 Sum_probs=81.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEE-EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc-
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV-SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP- 94 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~-~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~- 94 (507)
+.....+++|||+|||.++++++|+++|++||.|. +|++..++.+++++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 3 s~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 3 SGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp CCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 34567899999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred ---eEeecccCC
Q 010577 95 ---IRVMYSHRD 103 (507)
Q Consensus 95 ---~~v~~~~~~ 103 (507)
|+|.++...
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 999888755
No 96
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=8.7e-19 Score=142.44 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=78.5
Q ss_pred eEEEEeCCHHHHHHHHHHHcCCCCCCceeeeeccccchHHHHHHhHHHHHhhHHhhhccCCcceEEecCCCCCCHHHHHh
Q 010577 245 FGFVNFENSDDAARAVEALNGKKFDDKEWYVGKAQKKSERELELKHQFEQNMKEAADKFQGANLYIKNLDDSIDDEKLKQ 324 (507)
Q Consensus 245 ~afv~f~~~~~a~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~ 324 (507)
+.|.++.+...+..|+..+++....++.. ..+... .......++|||+|||+++|+++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~------------------~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP------------------PPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp ------------------------------CCSCCS------------------CSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC------------------CCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 56788888888888888887766544331 111111 11223467899999999999999999
Q ss_pred cccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 325 LFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 325 ~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
+|+.||.|.+|++..+. +++++|||||+|.+.++|.+|++.|||..+.|+.|+|+|+++.
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999886 7899999999999999999999999999999999999999753
No 97
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=2.9e-17 Score=127.89 Aligned_cols=88 Identities=23% Similarity=0.338 Sum_probs=80.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC---c
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG---K 93 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g---~ 93 (507)
......+++|||+|||.++++++|+++|+.||.|.+|.+..+. ++.++|||||+|.+.++|.+|++.||+..+.| +
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3445678999999999999999999999999999999999987 78999999999999999999999999999988 9
Q ss_pred ceEeecccCCcc
Q 010577 94 PIRVMYSHRDPS 105 (507)
Q Consensus 94 ~~~v~~~~~~~~ 105 (507)
+|+|.++.....
T Consensus 88 ~l~V~~a~~~~~ 99 (105)
T 2dnh_A 88 SLVVKFADTDKE 99 (105)
T ss_dssp CCEEEESCSSCC
T ss_pred cEEEEECccCcc
Confidence 999999886643
No 98
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=3.1e-18 Score=127.78 Aligned_cols=80 Identities=33% Similarity=0.510 Sum_probs=75.4
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
.+.++|||+|||.++++++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999999999999999999999999998884 8889999999999999999999999999999999999997
Q ss_pred h
Q 010577 382 Q 382 (507)
Q Consensus 382 ~ 382 (507)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=2.1e-18 Score=145.93 Aligned_cols=141 Identities=17% Similarity=0.317 Sum_probs=78.7
Q ss_pred EEeCCHHHHHHHHHHHcCCCCC--CceeeeeccccchHHHHHHhH--HHHHhhHHhhhccCCcceEEecCCCCCCHHHHH
Q 010577 248 VNFENSDDAARAVEALNGKKFD--DKEWYVGKAQKKSERELELKH--QFEQNMKEAADKFQGANLYIKNLDDSIDDEKLK 323 (507)
Q Consensus 248 v~f~~~~~a~~a~~~l~~~~~~--~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 323 (507)
.+|.+.++|..++..+++.... ++.....+............. ..............+++|||+|||+.+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 5788889999988888775544 333333322111000000000 000011111223456789999999999999999
Q ss_pred hcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhchHHHH
Q 010577 324 QLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRKEDRR 388 (507)
Q Consensus 324 ~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~~~~~ 388 (507)
++|+.||.|..|.|..+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+.....+.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999985 88999999999999999999999999999999999999998665443
No 100
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=140.42 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=78.9
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCC--CeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFG--SITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
..++|||+||++++|+++|+++|+.|| .|.+|+++.|. +|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346899999999999999999999999 99999999996 899999999999999999999999999999999999999
Q ss_pred hhchHHHHH
Q 010577 381 AQRKEDRRA 389 (507)
Q Consensus 381 ~~~~~~~~~ 389 (507)
+.++.....
T Consensus 134 a~~~~~~~~ 142 (156)
T 3n9u_C 134 ATRQNLSQF 142 (156)
T ss_dssp CCHHHHHHH
T ss_pred cCCCcchhh
Confidence 987665443
No 101
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=128.60 Aligned_cols=80 Identities=23% Similarity=0.450 Sum_probs=75.5
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||.++++++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|+|+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 356789999999999999999999999999999999987 5889999999999999999999999999999999999997
Q ss_pred h
Q 010577 382 Q 382 (507)
Q Consensus 382 ~ 382 (507)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 102
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=131.20 Aligned_cols=83 Identities=30% Similarity=0.484 Sum_probs=77.8
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
....++|||+|||+++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3456789999999999999999999999999999999996 889999999999999999999999999999999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
++++
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9753
No 103
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=129.53 Aligned_cols=87 Identities=36% Similarity=0.599 Sum_probs=81.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
.......++|||+|||.++++++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|.+|++.|++..|.|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred eecccCC
Q 010577 97 VMYSHRD 103 (507)
Q Consensus 97 v~~~~~~ 103 (507)
|.++...
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9988754
No 104
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=131.06 Aligned_cols=82 Identities=66% Similarity=1.081 Sum_probs=77.5
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
....++|||+|||+++|+++|+++|+.||.|.+|++..+ +|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346789999999999999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
+++
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 753
No 105
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=128.04 Aligned_cols=83 Identities=14% Similarity=0.289 Sum_probs=73.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCC--CCCCCcce
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF--TPLNGKPI 95 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~~ 95 (507)
.+...+++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++ ..+.|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 35667899999999999999999999999999999999875 57999999999999999998864 67999999
Q ss_pred EeecccCCccc
Q 010577 96 RVMYSHRDPSL 106 (507)
Q Consensus 96 ~v~~~~~~~~~ 106 (507)
+|.+++.....
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999866443
No 106
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=2.9e-18 Score=129.15 Aligned_cols=81 Identities=20% Similarity=0.386 Sum_probs=72.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G--~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
.+|||+|||+++++++|+++|+.|| .|.+|++..+..+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred CCc
Q 010577 102 RDP 104 (507)
Q Consensus 102 ~~~ 104 (507)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 107
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=133.96 Aligned_cols=81 Identities=30% Similarity=0.534 Sum_probs=77.3
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 85 ~ 85 (116)
T 2fy1_A 85 K 85 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=128.24 Aligned_cols=92 Identities=27% Similarity=0.446 Sum_probs=82.0
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.+.........++|||+|||.++++++|+++|+.||.|.+|.+..+.. .++|||||+|.+.++|.+|++.||+..|.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 5 SSGMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp SCCCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 344556778899999999999999999999999999999999999843 368999999999999999999999999999
Q ss_pred cceEeecccCCccc
Q 010577 93 KPIRVMYSHRDPSL 106 (507)
Q Consensus 93 ~~~~v~~~~~~~~~ 106 (507)
++|+|.++......
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 83 KEVKVNWATTPSSQ 96 (103)
T ss_dssp EEEEEEECCCTTCC
T ss_pred CeEEEEECCCCccc
Confidence 99999998875443
No 109
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=131.77 Aligned_cols=93 Identities=24% Similarity=0.414 Sum_probs=84.9
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEE--------EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV--------SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~--------~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 85 (507)
+........+++|||+|||.++++++|+++|+.||.|. .|.++.+..+++++|||||+|.+.++|.+|++.|
T Consensus 6 p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 6 SGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CCCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred CCCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 34455778899999999999999999999999999998 6999999889999999999999999999999999
Q ss_pred CCCCCCCcceEeecccCCccc
Q 010577 86 NFTPLNGKPIRVMYSHRDPSL 106 (507)
Q Consensus 86 ~~~~~~g~~~~v~~~~~~~~~ 106 (507)
|+..|.|++|+|.++......
T Consensus 86 ~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 86 DGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTCEETTEECEEECSSCCCCS
T ss_pred CCCccCCCEEEEEECCCCCCC
Confidence 999999999999998876443
No 110
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=129.29 Aligned_cols=91 Identities=26% Similarity=0.450 Sum_probs=82.6
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
+.........++|||+|||.++++++|+++|+.|| |.+|.+..+..+ ++++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 6 SGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 44555667889999999999999999999999999 999999999887 899999999999999999999 899999999
Q ss_pred cceEeecccCCccc
Q 010577 93 KPIRVMYSHRDPSL 106 (507)
Q Consensus 93 ~~~~v~~~~~~~~~ 106 (507)
+.|+|.++......
T Consensus 84 ~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 84 KRIRVDVADQAQDK 97 (104)
T ss_dssp EECEEEECCCCCCC
T ss_pred cEEEEEEccCCCCC
Confidence 99999998866443
No 111
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=4.4e-18 Score=129.91 Aligned_cols=80 Identities=28% Similarity=0.510 Sum_probs=76.3
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+|||+++++++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|+|++.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 45689999999999999999999999999999999998899999999999999999999999999999999999999864
No 112
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=1.5e-17 Score=129.76 Aligned_cols=91 Identities=19% Similarity=0.389 Sum_probs=83.3
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC---C
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL---N 91 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~ 91 (507)
.....+...++|||+|||.++++++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|.+|++.||+..+ .
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 3445667889999999999999999999999999999999999988999999999999999999999999999887 8
Q ss_pred CcceEeecccCCcc
Q 010577 92 GKPIRVMYSHRDPS 105 (507)
Q Consensus 92 g~~~~v~~~~~~~~ 105 (507)
|++|+|.++.....
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 89999999886643
No 113
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=128.18 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=71.9
Q ss_pred hccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCce--ecCcceee
Q 010577 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM--VVSKPLYV 378 (507)
Q Consensus 301 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~--~~g~~i~v 378 (507)
...++++|||+|||+++|+++|+++|++||.|.+|+++++ ||+|||+|++.++|.+|++.+++.. +.|++|.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 3456788999999999999999999999999999999863 7899999999999999999999875 78999999
Q ss_pred ehhhch
Q 010577 379 ALAQRK 384 (507)
Q Consensus 379 ~~~~~~ 384 (507)
.|++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 114
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.3e-18 Score=130.52 Aligned_cols=82 Identities=28% Similarity=0.476 Sum_probs=77.7
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356789999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
+++
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 115
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=128.46 Aligned_cols=86 Identities=23% Similarity=0.496 Sum_probs=79.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLS---TRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
.++++|||+|||.++++++|+++|+.||.|.+|.+..+.. ++.++|||||+|.+.++|.+|++.||+..|.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5679999999999999999999999999999999999876 5689999999999999999999999999999999999
Q ss_pred ecccCCccc
Q 010577 98 MYSHRDPSL 106 (507)
Q Consensus 98 ~~~~~~~~~ 106 (507)
.++......
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 998866443
No 116
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=7.6e-18 Score=131.19 Aligned_cols=82 Identities=33% Similarity=0.628 Sum_probs=77.6
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecC---cceeee
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS---KPLYVA 379 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g---~~i~v~ 379 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred hhhch
Q 010577 380 LAQRK 384 (507)
Q Consensus 380 ~~~~~ 384 (507)
|++..
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 99754
No 117
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.1e-18 Score=129.13 Aligned_cols=81 Identities=20% Similarity=0.418 Sum_probs=76.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. +++++|||||+|.+.++|.+|++ +|+..++|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456789999999999999999999999999999999986 78899999999999999999998 9999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
.++
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 118
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.1e-18 Score=128.71 Aligned_cols=87 Identities=29% Similarity=0.612 Sum_probs=80.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i-~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
+.++++|||+|||.++++++|+++|+.||.|.+| .+..+..++.++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3468999999999999999999999999999999 999998899999999999999999999999999999999999999
Q ss_pred cccCCccc
Q 010577 99 YSHRDPSL 106 (507)
Q Consensus 99 ~~~~~~~~ 106 (507)
++......
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 98766433
No 119
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-18 Score=128.79 Aligned_cols=81 Identities=25% Similarity=0.326 Sum_probs=76.1
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
.+.++|||+|||.++++++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|+|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 345689999999999999999999999999999999987 6889999999999999999999999999999999999998
Q ss_pred hc
Q 010577 382 QR 383 (507)
Q Consensus 382 ~~ 383 (507)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 120
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=9.5e-18 Score=128.97 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=75.6
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeE--------EEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecC
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITS--------CKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g 373 (507)
...++|||+|||+++|+++|+++|+.||.|.+ |++..+. +|+++|||||+|.+.++|.+|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45678999999999999999999999999999 9999986 79999999999999999999999999999999
Q ss_pred cceeeehhh
Q 010577 374 KPLYVALAQ 382 (507)
Q Consensus 374 ~~i~v~~~~ 382 (507)
+.|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 121
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=127.70 Aligned_cols=89 Identities=18% Similarity=0.276 Sum_probs=80.0
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS-VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~-i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
+.........++|||+|||+++++++|+++|+.||.|.+ |.+..+ .+++++|||||+|.+.++|.+|++. ++..+.|
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 6 SGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp CCCCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 444556678899999999999999999999999999987 888888 7899999999999999999999997 9999999
Q ss_pred cceEeecccCCc
Q 010577 93 KPIRVMYSHRDP 104 (507)
Q Consensus 93 ~~~~v~~~~~~~ 104 (507)
+.|+|..+...+
T Consensus 84 r~i~v~~~~~~~ 95 (104)
T 1wg5_A 84 RYIEIFKSSRAE 95 (104)
T ss_dssp SCCEEEEECTTT
T ss_pred cEEEEEECCHHH
Confidence 999998876543
No 122
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=6.8e-18 Score=129.65 Aligned_cols=89 Identities=19% Similarity=0.272 Sum_probs=80.9
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
.........++|||+|||+++++++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|.+|++.||+..|.|++
T Consensus 7 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 7 GASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CCCCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 33445567799999999999999999999999999998888888889999999999999999999999999999999999
Q ss_pred eEeecccCC
Q 010577 95 IRVMYSHRD 103 (507)
Q Consensus 95 ~~v~~~~~~ 103 (507)
|+|.++...
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999987643
No 123
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=6.8e-18 Score=133.75 Aligned_cols=82 Identities=39% Similarity=0.615 Sum_probs=77.4
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. +++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 355789999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
+++
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
No 124
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=128.37 Aligned_cols=88 Identities=14% Similarity=0.262 Sum_probs=78.9
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
+.........++|||+|||+++++++|+++|+.||.| +|.++.+. +++++|||||+|.+.++|.+|++ +|+..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 6 SGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp CCSSCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 3445677888999999999999999999999999955 99999997 89999999999999999999996 799999999
Q ss_pred ceEeecccCCc
Q 010577 94 PIRVMYSHRDP 104 (507)
Q Consensus 94 ~~~v~~~~~~~ 104 (507)
.|+|..+....
T Consensus 83 ~i~V~~~~~~~ 93 (102)
T 1wez_A 83 YVELFLNSTAG 93 (102)
T ss_dssp CCEEEEECCCC
T ss_pred EEEEEECCCCC
Confidence 99998876553
No 125
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=124.91 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=71.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCC--CCCcce
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP--LNGKPI 95 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~--~~g~~~ 95 (507)
....++++|||+|||.++++++|+++|++||.|.+|.+.+ .+|+|||+|.+.++|.+|++.|++.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3456789999999999999999999999999999999975 35799999999999999999998765 789999
Q ss_pred EeecccCC
Q 010577 96 RVMYSHRD 103 (507)
Q Consensus 96 ~v~~~~~~ 103 (507)
+|.+++..
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999865
No 126
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=3e-17 Score=129.69 Aligned_cols=85 Identities=25% Similarity=0.457 Sum_probs=79.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
.....++|||+|||.++++++|+++|+.||.|.+|.+..+. ++.++|||||+|.+.++|.+|++.||+..|.|++|+|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45677999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred cccCCc
Q 010577 99 YSHRDP 104 (507)
Q Consensus 99 ~~~~~~ 104 (507)
++....
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 987554
No 127
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=3.3e-18 Score=130.62 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=75.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
......++|||+|||+++++++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|.+|++.||+..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 34455699999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccc
Q 010577 98 MYSH 101 (507)
Q Consensus 98 ~~~~ 101 (507)
.++.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8875
No 128
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1.6e-17 Score=124.40 Aligned_cols=84 Identities=27% Similarity=0.480 Sum_probs=76.0
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
....+...++|||+|||.++++++|+++|++||.|.+|.++.+..+++++|||||+|.+.++|.+|++ +++..+.|+.|
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 34567788999999999999999999999999999999999998899999999999999999999997 47778999999
Q ss_pred Eeecc
Q 010577 96 RVMYS 100 (507)
Q Consensus 96 ~v~~~ 100 (507)
+|.++
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99764
No 129
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.5e-18 Score=130.63 Aligned_cols=82 Identities=29% Similarity=0.465 Sum_probs=77.5
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 456789999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
.+.
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 754
No 130
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-18 Score=131.05 Aligned_cols=82 Identities=32% Similarity=0.488 Sum_probs=77.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 356789999999999999999999999999999999885 7889999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
++.
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 131
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=7.5e-18 Score=129.45 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCC------CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC-
Q 010577 20 QFGTTSLYVGDLEA------NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG- 92 (507)
Q Consensus 20 ~~~~~~l~V~nLp~------~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g- 92 (507)
+..+++|||+|||. ++++++|+++|++||.|.+|.++.+..+++++|||||+|.+.++|.+|++.||+..|.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEeecccC
Q 010577 93 KPIRVMYSHR 102 (507)
Q Consensus 93 ~~~~v~~~~~ 102 (507)
+.|+|.++..
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999998764
No 132
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=125.19 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=74.5
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCC--CCCC
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF--TPLN 91 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~ 91 (507)
+.+.....++++|||+|||+++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.|++ ..+.
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 6 SGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 334445667899999999999999999999999999999998753 57999999999999999998865 4599
Q ss_pred CcceEeecccCCcc
Q 010577 92 GKPIRVMYSHRDPS 105 (507)
Q Consensus 92 g~~~~v~~~~~~~~ 105 (507)
|++|+|.++.....
T Consensus 80 Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 80 GQQAFFNYSTSKRI 93 (104)
T ss_dssp SSBCEEEECSSSSC
T ss_pred CEEEEEEEccCccc
Confidence 99999999986543
No 133
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.6e-18 Score=130.86 Aligned_cols=82 Identities=22% Similarity=0.447 Sum_probs=77.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
..+++|||+|||+++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 345789999999999999999999999999999999987 6899999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 134
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=127.29 Aligned_cols=82 Identities=17% Similarity=0.324 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
.....++|||+|||+++++++|+++|+.||.|.+|.+.++.. +.++|||||+|.+.++|.+|+. +++..|.|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 456789999999999999999999999999999999999976 9999999999999999999999 89999999999998
Q ss_pred cccC
Q 010577 99 YSHR 102 (507)
Q Consensus 99 ~~~~ 102 (507)
+...
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 7654
No 135
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=130.20 Aligned_cols=86 Identities=24% Similarity=0.468 Sum_probs=79.8
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
.++|||+|||+++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 3589999999999999999999999999999999886 888999999999999999999999999999999999999987
Q ss_pred hHHHHHH
Q 010577 384 KEDRRAR 390 (507)
Q Consensus 384 ~~~~~~~ 390 (507)
...+...
T Consensus 88 ~~~~~~~ 94 (104)
T 1p1t_A 88 EKNKEEL 94 (104)
T ss_dssp TTHHHHH
T ss_pred ccchhhh
Confidence 7665543
No 136
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=136.76 Aligned_cols=94 Identities=30% Similarity=0.515 Sum_probs=84.9
Q ss_pred cCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 010577 7 QGQNVNGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (507)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 86 (507)
.++..+.+.........++|||+|||.++++++|+++|++||.|.+|.+..+..+++++|||||+|.+.++|.+|++.||
T Consensus 47 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 126 (140)
T 2ku7_A 47 DGGSGGSGGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp CCCSCSSCSSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred CCCCCCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 34444556666778889999999999999999999999999999999999998899999999999999999999999999
Q ss_pred CCCCCCcceEeecc
Q 010577 87 FTPLNGKPIRVMYS 100 (507)
Q Consensus 87 ~~~~~g~~~~v~~~ 100 (507)
+..|.|++|+|.++
T Consensus 127 g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 127 ESELFGRTIRVNLA 140 (140)
T ss_dssp EEEETTEEEEEEC-
T ss_pred CCEECCEEEEEEeC
Confidence 99999999999864
No 137
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.3e-18 Score=129.33 Aligned_cols=81 Identities=36% Similarity=0.645 Sum_probs=76.5
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEE-EEeeC-CCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~-~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
+.++|||+|||+++|+++|+++|+.||.|.+| ++..+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56789999999999999999999999999999 99998 48999999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
.++
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 753
No 138
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-17 Score=126.93 Aligned_cols=87 Identities=33% Similarity=0.474 Sum_probs=80.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhc-CCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCC-CCCcce
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQ-MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP-LNGKPI 95 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~-~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g~~~ 95 (507)
.....+++|||+|||.++++++|+++|+. ||.|.+|.+..+. ++.++|||||+|.+.++|.+|++.|++.. +.|++|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567899999999999999999999999 9999999999997 89999999999999999999999999999 999999
Q ss_pred EeecccCCcc
Q 010577 96 RVMYSHRDPS 105 (507)
Q Consensus 96 ~v~~~~~~~~ 105 (507)
+|.++.....
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999876543
No 139
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.8e-18 Score=125.84 Aligned_cols=80 Identities=28% Similarity=0.479 Sum_probs=75.4
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
+.++|||+|||+++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|++++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 56789999999999999999999999999999999986 78999999999999999999999999999999999998875
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 140
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=1.2e-17 Score=130.64 Aligned_cols=81 Identities=30% Similarity=0.497 Sum_probs=77.1
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
....++|||+|||+++|+++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|+++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred h
Q 010577 382 Q 382 (507)
Q Consensus 382 ~ 382 (507)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 141
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=1.2e-17 Score=132.39 Aligned_cols=81 Identities=30% Similarity=0.561 Sum_probs=77.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 456789999999999999999999999999999999996 8999999999999999999999999999999999999999
Q ss_pred hc
Q 010577 382 QR 383 (507)
Q Consensus 382 ~~ 383 (507)
++
T Consensus 93 ~~ 94 (115)
T 2dgo_A 93 TR 94 (115)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 142
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=4.5e-17 Score=123.46 Aligned_cols=84 Identities=29% Similarity=0.416 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
....+++|||+|||.++++++|+++|+.||.|..|.+..+ +++++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999984 78899999999999999999999999999999999999
Q ss_pred cccCCc
Q 010577 99 YSHRDP 104 (507)
Q Consensus 99 ~~~~~~ 104 (507)
+++...
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 987664
No 143
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=130.49 Aligned_cols=82 Identities=34% Similarity=0.613 Sum_probs=77.1
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||.++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.|||..+.|+.|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 356789999999999999999999999999999999885 7889999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
+++
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 764
No 144
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.2e-17 Score=134.45 Aligned_cols=83 Identities=25% Similarity=0.343 Sum_probs=77.7
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
..+.++|||+|||+++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.|||..|.|+.|+|+|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999986 788999999999999999999999999999999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
+.++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9754
No 145
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.4e-18 Score=125.66 Aligned_cols=82 Identities=26% Similarity=0.470 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
..++++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.||+..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45789999999999999999999999999999999999988999999999999999999999999999999999999876
Q ss_pred cc
Q 010577 100 SH 101 (507)
Q Consensus 100 ~~ 101 (507)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 146
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.5e-18 Score=130.67 Aligned_cols=81 Identities=25% Similarity=0.401 Sum_probs=76.6
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 356789999999999999999999999999999999987 6889999999999999999999999999999999999999
Q ss_pred hc
Q 010577 382 QR 383 (507)
Q Consensus 382 ~~ 383 (507)
+.
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 74
No 147
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=128.11 Aligned_cols=80 Identities=29% Similarity=0.487 Sum_probs=75.3
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+..+ ++|||||+|.+.++|.+|++.|||..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 45678999999999999999999999999999999988755 89999999999999999999999999999999999997
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 92 ~ 92 (103)
T 2cq3_A 92 A 92 (103)
T ss_dssp S
T ss_pred c
Confidence 5
No 148
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.7e-18 Score=130.38 Aligned_cols=82 Identities=32% Similarity=0.554 Sum_probs=77.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999986 7889999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
++.
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 753
No 149
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=131.17 Aligned_cols=81 Identities=32% Similarity=0.574 Sum_probs=77.1
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|.+|++.||+..++|+.|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
.
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 4
No 150
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=132.13 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=79.6
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCe-eEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSI-TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 356789999999999999999999999999 899999999999999999999999999999977 999999999999999
Q ss_pred hchHHHHHH
Q 010577 382 QRKEDRRAR 390 (507)
Q Consensus 382 ~~~~~~~~~ 390 (507)
..+..+...
T Consensus 92 ~~~~~~~~~ 100 (114)
T 2cpy_A 92 TLEDMREIE 100 (114)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 876655443
No 151
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=1.9e-17 Score=130.12 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=82.9
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
.........+++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 17 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 17 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp -CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 44555667789999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ceEeecccCC
Q 010577 94 PIRVMYSHRD 103 (507)
Q Consensus 94 ~~~v~~~~~~ 103 (507)
+|+|.++...
T Consensus 97 ~l~V~~a~~~ 106 (110)
T 1oo0_B 97 TIQVDWCFVK 106 (110)
T ss_dssp ECEEEESEES
T ss_pred EEEEEEcccC
Confidence 9999998754
No 152
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.1e-18 Score=128.69 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=69.4
Q ss_pred CCcceEEecCCC-CCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCc--eecCcceeeeh
Q 010577 304 QGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK--MVVSKPLYVAL 380 (507)
Q Consensus 304 ~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~--~~~g~~i~v~~ 380 (507)
++++|||+|||+ ++|+++|+++|++||.|.+|+++++ +|||||+|++.++|.+|++.||+. .+.|++|+|.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 567899999999 9999999999999999999999875 689999999999999999999864 59999999999
Q ss_pred hhc
Q 010577 381 AQR 383 (507)
Q Consensus 381 ~~~ 383 (507)
++.
T Consensus 89 a~~ 91 (102)
T 1x4d_A 89 SQK 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 974
No 153
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=9e-18 Score=135.44 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=77.0
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCC---eeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGS---ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
..++|||+|||+++|+++|+++|+.||. |.+|+|..+..|+++|||||+|++.++|.+|++ +|+..++|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4578999999999999999999999999 899999999889999999999999999999998 999999999999999
Q ss_pred hhchHH
Q 010577 381 AQRKED 386 (507)
Q Consensus 381 ~~~~~~ 386 (507)
+..++.
T Consensus 122 a~~~e~ 127 (136)
T 2hgl_A 122 SHRTEM 127 (136)
T ss_dssp CCHHHH
T ss_pred CChHHH
Confidence 976554
No 154
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=129.95 Aligned_cols=82 Identities=34% Similarity=0.530 Sum_probs=77.6
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccC-CCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCce-ecCcceeeeh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSP-FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKM-VVSKPLYVAL 380 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~-~~g~~i~v~~ 380 (507)
...++|||+|||+++|+++|+++|+. ||.|.+|++..+.+|.++|||||+|.+.++|.+|++.||+.. ++|+.|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 35678999999999999999999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
+.++
T Consensus 87 a~~~ 90 (104)
T 2dhg_A 87 AIPK 90 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9653
No 155
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.7e-17 Score=128.53 Aligned_cols=85 Identities=28% Similarity=0.466 Sum_probs=78.8
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
.......+++|||+|||..+++++|+++|+.||.|.+|.+..+. +++++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34566788999999999999999999999999999999999997 89999999999999999999999999999999999
Q ss_pred Eeeccc
Q 010577 96 RVMYSH 101 (507)
Q Consensus 96 ~v~~~~ 101 (507)
+|.++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 998865
No 156
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=9.7e-18 Score=133.58 Aligned_cols=80 Identities=39% Similarity=0.608 Sum_probs=75.1
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.|||..++|+.|+|+|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 356789999999999999999999999999999999886 7899999999999999999999999999999999999987
Q ss_pred h
Q 010577 382 Q 382 (507)
Q Consensus 382 ~ 382 (507)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 157
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.8e-17 Score=125.22 Aligned_cols=93 Identities=24% Similarity=0.385 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 12 NGGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 12 ~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
+.+.........++|||+|||.++++++|+++|+.||.|..|.+..+..+++++|||||+|.+.++|.+|++ ++..+.
T Consensus 4 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~ 81 (103)
T 2cqg_A 4 GSSGVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID 81 (103)
T ss_dssp CCSSCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET
T ss_pred CCCCCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC
Confidence 344455666788999999999999999999999999999999999998899999999999999999999999 466899
Q ss_pred CcceEeecccCCccc
Q 010577 92 GKPIRVMYSHRDPSL 106 (507)
Q Consensus 92 g~~~~v~~~~~~~~~ 106 (507)
|+.|+|.++......
T Consensus 82 g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 82 GRWCDCKLPNSKQSQ 96 (103)
T ss_dssp TEEEEEECCCTTCCC
T ss_pred CeEEEEEecCCCCcC
Confidence 999999998866443
No 158
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=129.82 Aligned_cols=86 Identities=29% Similarity=0.521 Sum_probs=80.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
....+++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 44567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cccCCc
Q 010577 99 YSHRDP 104 (507)
Q Consensus 99 ~~~~~~ 104 (507)
++....
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 987653
No 159
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=128.25 Aligned_cols=80 Identities=39% Similarity=0.683 Sum_probs=74.8
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCC--C--CCcceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPS--G--ISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--g--~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
+.++|||+|||+++|+++|+++|+.||.|.+|++..+.. | .++|||||+|.+.++|.+|++.|||..+.|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 567899999999999999999999999999999988753 4 789999999999999999999999999999999999
Q ss_pred hhhc
Q 010577 380 LAQR 383 (507)
Q Consensus 380 ~~~~ 383 (507)
++++
T Consensus 84 ~a~~ 87 (98)
T 2cpf_A 84 ISER 87 (98)
T ss_dssp CSSC
T ss_pred EccC
Confidence 9975
No 160
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.5e-17 Score=131.91 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=76.9
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCC---eeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGS---ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
..++|||+|||+++|+++|+++|+.||. |.+|+|..+..|+++|||||+|.+.++|.+|++ +|+..|+|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4678999999999999999999999998 899999999889999999999999999999998 999999999999999
Q ss_pred hhchHH
Q 010577 381 AQRKED 386 (507)
Q Consensus 381 ~~~~~~ 386 (507)
+...+.
T Consensus 95 a~~~~~ 100 (118)
T 2db1_A 95 SHRTEM 100 (118)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 976554
No 161
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=129.77 Aligned_cols=82 Identities=22% Similarity=0.483 Sum_probs=77.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC--CCCCcceEEEEeCCHHHHHHHHHHh-CCceecCcceeee
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP--SGISRGSGFVAFSTPEEASRALLEM-NGKMVVSKPLYVA 379 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~g~~~g~afv~f~~~~~A~~a~~~~-~~~~~~g~~i~v~ 379 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++.| |+..+.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 456789999999999999999999999999999999983 8899999999999999999999999 9999999999999
Q ss_pred hhhch
Q 010577 380 LAQRK 384 (507)
Q Consensus 380 ~~~~~ 384 (507)
|+++.
T Consensus 93 ~a~~~ 97 (107)
T 2cph_A 93 WADSE 97 (107)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 99753
No 162
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=7e-18 Score=132.57 Aligned_cols=82 Identities=21% Similarity=0.438 Sum_probs=77.1
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 355789999999999999999999999999999999886 7899999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
.++
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 764
No 163
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=127.36 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=73.7
Q ss_pred CCcceEEecCCCCCCHHHHH----hcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 304 QGANLYIKNLDDSIDDEKLK----QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
..++|||+|||+++++++|+ ++|+.||.|.+|++..+..+ +|||||+|.+.++|.+|++.|||..++|+.|+|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 46789999999999999999 99999999999999988765 8899999999999999999999999999999999
Q ss_pred hhhc
Q 010577 380 LAQR 383 (507)
Q Consensus 380 ~~~~ 383 (507)
++++
T Consensus 86 ~a~~ 89 (96)
T 2dgx_A 86 LATG 89 (96)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9974
No 164
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=1.6e-17 Score=125.90 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=75.7
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++++++|+++|+.||.|.+|++..+ +|+++|||||+|.+.++|.+|++.|||..++|+.|+|++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35678999999999999999999999999999999984 78899999999999999999999999999999999999997
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
+.
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 165
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=128.02 Aligned_cols=81 Identities=26% Similarity=0.465 Sum_probs=76.5
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCee-EEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcc----e
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSIT-SCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP----L 376 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~-~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~----i 376 (507)
...++|||+|||+++++++|+++|+.||.|. +|++..+. +|.++|||||+|.+.++|.+|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567899999999999999999999999999 99999997 8899999999999999999999999999999999 9
Q ss_pred eeehhhc
Q 010577 377 YVALAQR 383 (507)
Q Consensus 377 ~v~~~~~ 383 (507)
+|.|+++
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9999874
No 166
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=129.51 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=74.8
Q ss_pred cCCcceEEecCCCCCCHHHHH---hcccCCCCeeEEEEeeCC-C---CCCcceEEEEeCCHHHHHHHHHHhCCceecCcc
Q 010577 303 FQGANLYIKNLDDSIDDEKLK---QLFSPFGSITSCKVMRDP-S---GISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~v~~~~~~~~~-~---g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~ 375 (507)
...++|||+|||+++++++|+ ++|+.||.|.+|++..+. + ++++|||||+|.+.++|.+|++.|||..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346789999999999999999 999999999999998886 2 356799999999999999999999999999999
Q ss_pred eeeehhhch
Q 010577 376 LYVALAQRK 384 (507)
Q Consensus 376 i~v~~~~~~ 384 (507)
|+|.|+.++
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999999753
No 167
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=130.14 Aligned_cols=82 Identities=28% Similarity=0.501 Sum_probs=77.1
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhC------CceecCcc
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMN------GKMVVSKP 375 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~------~~~~~g~~ 375 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.+| +..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 356789999999999999999999999999999999986 68899999999999999999999999 99999999
Q ss_pred eeeehhhch
Q 010577 376 LYVALAQRK 384 (507)
Q Consensus 376 i~v~~~~~~ 384 (507)
|+|.|+.++
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999754
No 168
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=127.79 Aligned_cols=92 Identities=24% Similarity=0.413 Sum_probs=80.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 103 (507)
++|||+|||.++++++|+++|++||.|.+|.+..+ ++|||||+|.+.++|.+|++.|++..+.|+.|+|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6789999999999999999999999999999999998765
Q ss_pred ccccc--------CCCCcEEEcCCC
Q 010577 104 PSLRK--------SGAGNIFIKNLD 120 (507)
Q Consensus 104 ~~~~~--------~~~~~v~v~nLp 120 (507)
..... ....+|||+||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 42221 125679999986
No 169
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=130.79 Aligned_cols=81 Identities=21% Similarity=0.455 Sum_probs=76.0
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
.++|||+|||+++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.++++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 3579999999999999999999999999999999887 5899999999999999999999 9999999999999999986
Q ss_pred hHH
Q 010577 384 KED 386 (507)
Q Consensus 384 ~~~ 386 (507)
+..
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 554
No 170
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=8.2e-17 Score=129.32 Aligned_cols=89 Identities=26% Similarity=0.437 Sum_probs=82.3
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
........+++|||+|||.++++++|+++|+.||.|.+|.+..+. +++++|||||+|.+.++|.+|++.||+..+.|++
T Consensus 27 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 27 GGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp CCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 334566788999999999999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred eEeecccCCc
Q 010577 95 IRVMYSHRDP 104 (507)
Q Consensus 95 ~~v~~~~~~~ 104 (507)
|+|.++....
T Consensus 106 l~V~~a~~~~ 115 (124)
T 2kt5_A 106 MDIQLVASQI 115 (124)
T ss_dssp EEEEEECCTT
T ss_pred EEEEEeCCCC
Confidence 9999987653
No 171
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=123.29 Aligned_cols=85 Identities=22% Similarity=0.403 Sum_probs=79.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
........++|||+|||+++++++|+++|+.| .|.+|.++.+ .+++++|||||+|.+.++|.+|++ ||+..+.|+.|
T Consensus 3 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 3 SGSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 34566788999999999999999999999999 9999999999 789999999999999999999999 99999999999
Q ss_pred EeecccCC
Q 010577 96 RVMYSHRD 103 (507)
Q Consensus 96 ~v~~~~~~ 103 (507)
+|.++...
T Consensus 80 ~v~~a~~~ 87 (91)
T 2dgw_A 80 EVFREKSG 87 (91)
T ss_dssp EEEEESSC
T ss_pred EEEECCcC
Confidence 99988765
No 172
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=124.96 Aligned_cols=77 Identities=19% Similarity=0.363 Sum_probs=70.3
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHh--CCceecCcceeeeh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM--NGKMVVSKPLYVAL 380 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~--~~~~~~g~~i~v~~ 380 (507)
.++++|||+|||+++|+++|+++|+.||.|.+|.+.++ +|||||+|++.++|.+|++.+ ++..+.|+.|.|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 35678999999999999999999999999999998875 789999999999999999977 56789999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
++.+
T Consensus 88 a~~~ 91 (101)
T 2cq1_A 88 SNHK 91 (101)
T ss_dssp CSCS
T ss_pred cCcc
Confidence 9754
No 173
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=2.4e-17 Score=124.14 Aligned_cols=78 Identities=22% Similarity=0.437 Sum_probs=74.4
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
.++|||+|||.++|+++|+++|+.||.|.+|++..+. +++++|||||+|.+.++|.+|+ .+||..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 3579999999999999999999999999999999986 8899999999999999999999 9999999999999999875
No 174
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.4e-17 Score=134.33 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=77.5
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~---v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
........++|||+|||+++++++|+++|+.||. |.+|.++.+.. ++++|||||+|.+.++|.+|++ +|+..+.|
T Consensus 37 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g 114 (136)
T 2hgl_A 37 LGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGH 114 (136)
T ss_dssp SCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECC
Confidence 3455677899999999999999999999999998 89999999976 9999999999999999999999 99999999
Q ss_pred cceEeeccc
Q 010577 93 KPIRVMYSH 101 (507)
Q Consensus 93 ~~~~v~~~~ 101 (507)
+.|+|.++.
T Consensus 115 r~i~V~~a~ 123 (136)
T 2hgl_A 115 RYIEVFKSH 123 (136)
T ss_dssp SEEEEEECC
T ss_pred EEEEEEECC
Confidence 999998765
No 175
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=2.7e-17 Score=123.85 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
...++|||+|||.++++++|+++|+.||.|.+|.+..+..+++++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999999889999999999999999999999 89999999999999988
Q ss_pred cCC
Q 010577 101 HRD 103 (507)
Q Consensus 101 ~~~ 103 (507)
+..
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 754
No 176
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=4.5e-17 Score=131.35 Aligned_cols=91 Identities=24% Similarity=0.330 Sum_probs=83.4
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
.........+++|||+|||.++++++|+++|+.||.|.+|.++.+..++.++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 13 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 13 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp -CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 44455667789999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ceEeecccCCc
Q 010577 94 PIRVMYSHRDP 104 (507)
Q Consensus 94 ~~~v~~~~~~~ 104 (507)
.|+|.++....
T Consensus 93 ~l~v~~a~~~~ 103 (126)
T 3ex7_B 93 PISVDWCFVRG 103 (126)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEEecCCC
Confidence 99999987553
No 177
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=123.55 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCC-cccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR-SLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
...++|||+|||.++++++|+++|+.||.|.+|.+..+..++. ++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4578999999999999999999999999999999999877665 899999999999999999999999999999999998
Q ss_pred ccCC
Q 010577 100 SHRD 103 (507)
Q Consensus 100 ~~~~ 103 (507)
+...
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7654
No 178
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=126.53 Aligned_cols=77 Identities=18% Similarity=0.404 Sum_probs=73.0
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
++|||+|||+++|+++|+++|+.| .|.+|+|..+.+|+++|||||+|.+.++|.+|+ .+|+..++|+.|.|..+...
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 479999999999999999999999 899999999989999999999999999999999 79999999999999888654
No 179
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.8e-17 Score=122.31 Aligned_cols=84 Identities=15% Similarity=0.279 Sum_probs=73.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcC--CCCCCCcc
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGKP 94 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~ 94 (507)
-....++++|||+|||+++++++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|++.|+ +..+.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344567899999999999999999999999999999998764 5799999999999999999874 56799999
Q ss_pred eEeecccCCccc
Q 010577 95 IRVMYSHRDPSL 106 (507)
Q Consensus 95 ~~v~~~~~~~~~ 106 (507)
|+|.++......
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999866444
No 180
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=129.17 Aligned_cols=77 Identities=18% Similarity=0.401 Sum_probs=70.8
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCC--ceecCcceeeeh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG--KMVVSKPLYVAL 380 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~--~~~~g~~i~v~~ 380 (507)
.++++|||+|||+++|+++|+++|+.||.|.+|+++++ +|||||+|++.++|.+|++.+++ ..+.|+.|+|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 35678999999999999999999999999999999876 78999999999999999998874 689999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
++.+
T Consensus 104 a~~k 107 (119)
T 2ad9_A 104 SNHK 107 (119)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 9754
No 181
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=127.62 Aligned_cols=81 Identities=31% Similarity=0.478 Sum_probs=75.3
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+..+ ++|||||+|.+.++|.+|++.||+..+.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 35678999999999999999999999999999999998644 68999999999999999999999999999999999997
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
+.
T Consensus 92 ~~ 93 (103)
T 2cqi_A 92 TP 93 (103)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 182
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=128.55 Aligned_cols=80 Identities=20% Similarity=0.401 Sum_probs=73.5
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC--CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP--SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
...++|||+|||+++++++|+++|+.|| |.+|++..+. +|+++|||||+|.+.++|.+|+ .|||..++|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3567899999999999999999999999 9999999986 7999999999999999999999 9999999999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
++++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8754
No 183
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=129.77 Aligned_cols=82 Identities=29% Similarity=0.465 Sum_probs=75.9
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
....++|||+|||.++|+++|+++|+.||.|.+|++..+.. .++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 44667899999999999999999999999999999998864 48999999999999999999999999999999999998
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
No 184
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=1.4e-17 Score=120.87 Aligned_cols=74 Identities=22% Similarity=0.370 Sum_probs=70.6
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
+|||+|||+++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++ +|+..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999987 79999999999999999999996 9999999999999875
No 185
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=124.67 Aligned_cols=89 Identities=17% Similarity=0.321 Sum_probs=79.2
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
..........++|||+|||.++++++|+++|+.||.|.+|.+..+ +++++||||+|.+.++|.+|++.||+..|.|+
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 344556677899999999999999999999999999999999653 56789999999999999999999999999999
Q ss_pred ceEeecccCCcc
Q 010577 94 PIRVMYSHRDPS 105 (507)
Q Consensus 94 ~~~v~~~~~~~~ 105 (507)
+|+|.+++....
T Consensus 90 ~l~V~~a~~~~~ 101 (109)
T 1x4a_A 90 RLRVEFPRSGRG 101 (109)
T ss_dssp ECEEECCCCCCC
T ss_pred EEEEEEcccCCC
Confidence 999999886643
No 186
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.2e-17 Score=125.64 Aligned_cols=85 Identities=14% Similarity=0.287 Sum_probs=75.0
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcC--CCCCCCc
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGK 93 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~ 93 (507)
+-....++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|+ +..+.|+
T Consensus 24 ~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 24 SRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp TTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 3445567899999999999999999999999999999999875 5799999999999999999887 4679999
Q ss_pred ceEeecccCCccc
Q 010577 94 PIRVMYSHRDPSL 106 (507)
Q Consensus 94 ~~~v~~~~~~~~~ 106 (507)
+|+|.+++.....
T Consensus 98 ~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 98 PIYIQFSNHKELK 110 (119)
T ss_dssp CCEEEECSSSSCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999866443
No 187
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.3e-17 Score=127.32 Aligned_cols=80 Identities=16% Similarity=0.349 Sum_probs=73.5
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++|||+|||+++|+++|+++|+.||.|.++.++.+. +|+++|||||+|.+.++|.+|++.||+..+.|+.|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45789999999999999999999999999988887765 78899999999999999999999999999999999999986
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 188
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=127.14 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=72.9
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++|+++|+++|+.||. .+|+|+.+.+|+++|||||+|++.++|.+|+ .+|+..++|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 34578999999999999999999999994 5999999999999999999999999999999 579999999999999876
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
.
T Consensus 91 ~ 91 (102)
T 1wez_A 91 T 91 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 189
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=135.80 Aligned_cols=81 Identities=27% Similarity=0.427 Sum_probs=76.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G--~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
..++|||+|||+++++++|+++|+.|| .|.+|+++.+..+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 010577 100 SHR 102 (507)
Q Consensus 100 ~~~ 102 (507)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 764
No 190
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=123.92 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=75.5
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++|+++|+++|+.| .|.+|++..+.+|+++|||||+|.+.++|.+|++ +||..++|+.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 346789999999999999999999999 9999999999999999999999999999999999 99999999999999987
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
.+
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 191
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=2.2e-17 Score=134.11 Aligned_cols=92 Identities=27% Similarity=0.449 Sum_probs=83.9
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
+.........++|||+|||.++++++|+++|+.||.|.+|.+..+..+++++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 38 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 38 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 44455566778999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ceEeecccCCcc
Q 010577 94 PIRVMYSHRDPS 105 (507)
Q Consensus 94 ~~~v~~~~~~~~ 105 (507)
+|+|.+++....
T Consensus 118 ~l~V~~a~~~~~ 129 (135)
T 2lea_A 118 ELRVQMARYGRP 129 (135)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999886543
No 192
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=3.2e-17 Score=131.73 Aligned_cols=81 Identities=30% Similarity=0.484 Sum_probs=77.1
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..+++|||+|||.++++++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
.
T Consensus 113 ~ 113 (124)
T 2kt5_A 113 S 113 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 193
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=133.20 Aligned_cols=90 Identities=22% Similarity=0.411 Sum_probs=81.7
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEE--EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCC---
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS--VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT--- 88 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~--i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~--- 88 (507)
+........+++|||+|||+++++++|+++|++||.|.. |+++++..+++++|||||+|.+. +|.+|+..||+.
T Consensus 14 ~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 14 GSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 334455577899999999999999999999999999977 99999998999999999999999 999999999999
Q ss_pred -CCCCcceEeecccCCc
Q 010577 89 -PLNGKPIRVMYSHRDP 104 (507)
Q Consensus 89 -~~~g~~~~v~~~~~~~ 104 (507)
.+.|++|+|.++....
T Consensus 93 ~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGSK 109 (131)
T ss_dssp CCGGGCCCCCEECCCSC
T ss_pred ccCCCEEEEEEECCCCC
Confidence 9999999999987653
No 194
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=124.97 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=75.7
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC-
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG- 92 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g- 92 (507)
+.........++|||+|||+++++++|+++|++||.|..|.+..+ |||||+|.+.++|.+||+.||+..|.|
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 6 SGGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CSSCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 334455678899999999999999999999999999999999876 699999999999999999999999999
Q ss_pred ----cceEeecccCCc
Q 010577 93 ----KPIRVMYSHRDP 104 (507)
Q Consensus 93 ----~~~~v~~~~~~~ 104 (507)
+.|+|.++....
T Consensus 79 ~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 79 EGETAYIRVKVDGPRS 94 (108)
T ss_dssp TSCEEEEEEEESSCCS
T ss_pred cCcceEEEEEeCCCCC
Confidence 999999987653
No 195
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2.5e-17 Score=119.45 Aligned_cols=75 Identities=27% Similarity=0.495 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 25 ~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
+|||+|||+++++++|+++|+.||.|.+|.+..+..+++++|||||+|.+.++|.+|++ +++..+.|++++|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998889999999999999999999998 8999999999999864
No 196
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=1.7e-17 Score=129.37 Aligned_cols=82 Identities=26% Similarity=0.550 Sum_probs=76.6
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCcee---cCcceee
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMV---VSKPLYV 378 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~---~g~~i~v 378 (507)
...++|||+|||.++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.||+..+ .|+.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 356789999999999999999999999999999999987 689999999999999999999999999988 8999999
Q ss_pred ehhhch
Q 010577 379 ALAQRK 384 (507)
Q Consensus 379 ~~~~~~ 384 (507)
.+++..
T Consensus 91 ~~a~~~ 96 (106)
T 2dgp_A 91 KPADSE 96 (106)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 999753
No 197
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=3.9e-17 Score=122.29 Aligned_cols=79 Identities=23% Similarity=0.458 Sum_probs=72.9
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
....++|||+|||+++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++ +++..++|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999986 79999999999999999999995 588899999999987
Q ss_pred h
Q 010577 381 A 381 (507)
Q Consensus 381 ~ 381 (507)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 198
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=129.84 Aligned_cols=82 Identities=26% Similarity=0.465 Sum_probs=76.7
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCee--------EEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecC
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSIT--------SCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g 373 (507)
...++|||+|||+++|+++|+++|+.||.|. .|++..+. +|+++|||||+|.+.++|.+|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4567899999999999999999999999999 69999984 89999999999999999999999999999999
Q ss_pred cceeeehhhch
Q 010577 374 KPLYVALAQRK 384 (507)
Q Consensus 374 ~~i~v~~~~~~ 384 (507)
+.|+|.+++.+
T Consensus 93 ~~l~V~~a~~~ 103 (113)
T 2cpe_A 93 SKLKVSLARKK 103 (113)
T ss_dssp EECEEECSSCC
T ss_pred CEEEEEECCCC
Confidence 99999999753
No 199
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=124.51 Aligned_cols=81 Identities=21% Similarity=0.413 Sum_probs=74.4
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCC-CcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGI-SRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~-~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
..++|||+|||.++|+++|+++|+.||.|.+|++..+. ++. ++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 35689999999999999999999999999999998887 333 8999999999999999999999999999999999998
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 200
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=130.24 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=78.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCe----eEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceee
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSI----TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v 378 (507)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.+.+|+++|||||+|++.++|.+|++. |+..+.|+.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 356789999999999999999999999875 689999999999999999999999999999976 999999999999
Q ss_pred ehhhchHHHHHH
Q 010577 379 ALAQRKEDRRAR 390 (507)
Q Consensus 379 ~~~~~~~~~~~~ 390 (507)
..+..++.....
T Consensus 100 ~~a~~~e~~~~~ 111 (123)
T 2dha_A 100 FRSTAAEVQQVL 111 (123)
T ss_dssp EEECHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 998766655443
No 201
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=130.46 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=77.6
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCC---eeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS---ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
...++|||+|||+++|+++|+++|+.||. |.+|++..+..|+++|||||+|.+.++|.+|++ +|+..++|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 35678999999999999999999999988 999999999889999999999999999999998 99999999999999
Q ss_pred hhhchHHH
Q 010577 380 LAQRKEDR 387 (507)
Q Consensus 380 ~~~~~~~~ 387 (507)
++...+..
T Consensus 88 ~a~~~~~~ 95 (107)
T 2lmi_A 88 EINNEDVD 95 (107)
T ss_dssp ECCHHHHH
T ss_pred ECCHHHHH
Confidence 99865543
No 202
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=3.8e-17 Score=126.60 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=74.4
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.|| |.+|++..+. +|+++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3567899999999999999999999996 9999999997 6899999999999999999999 99999999999999999
Q ss_pred hc
Q 010577 382 QR 383 (507)
Q Consensus 382 ~~ 383 (507)
.+
T Consensus 91 ~~ 92 (103)
T 2dng_A 91 EG 92 (103)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 203
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=126.37 Aligned_cols=87 Identities=24% Similarity=0.439 Sum_probs=74.3
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecC-CCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDL-STRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
.........++|||+|||.++++++|+++|+.|| |.+|.+..+. .+++++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3445667889999999999999999999999999 9999999987 58999999999999999999999 7999999999
Q ss_pred ceEeecccCC
Q 010577 94 PIRVMYSHRD 103 (507)
Q Consensus 94 ~~~v~~~~~~ 103 (507)
.|+|.++...
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 9999988754
No 204
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.5e-17 Score=124.16 Aligned_cols=89 Identities=21% Similarity=0.390 Sum_probs=78.2
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.+........+++|||+|||.++++++|+++|++||.| .++.+ .+++++|||||+|.+.++|.+|++.||+..|.|
T Consensus 5 ~s~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 80 (101)
T 2fc9_A 5 SSGNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG 80 (101)
T ss_dssp CCCCCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT
T ss_pred CCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34455567789999999999999999999999999977 45555 578899999999999999999999999999999
Q ss_pred cceEeecccCCcc
Q 010577 93 KPIRVMYSHRDPS 105 (507)
Q Consensus 93 ~~~~v~~~~~~~~ 105 (507)
+.|+|.++.....
T Consensus 81 ~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 81 RAIRLELQGPRGS 93 (101)
T ss_dssp EEEEEEECSSCCC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999876643
No 205
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=127.48 Aligned_cols=80 Identities=18% Similarity=0.375 Sum_probs=74.2
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++|||+|||+++++++|+++|+.||.|.++.++.+. +|+++|||||+|.+.++|.+|++.|||..+.|+.|+|+++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 45689999999999999999999999999988777665 88899999999999999999999999999999999999986
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
.
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 206
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=123.60 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=76.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
.+....++|||+|||+++++++|+ ++|++||.|.+|.+..+..+ ++||||+|.+.++|.+|++.||+..+.|+
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 345567899999999999999999 99999999999999988654 78999999999999999999999999999
Q ss_pred ceEeecccCC
Q 010577 94 PIRVMYSHRD 103 (507)
Q Consensus 94 ~~~v~~~~~~ 103 (507)
+|+|.++...
T Consensus 81 ~l~V~~a~~~ 90 (96)
T 2dgx_A 81 KILVSLATGA 90 (96)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEcCCC
Confidence 9999998754
No 207
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.6e-17 Score=126.94 Aligned_cols=80 Identities=21% Similarity=0.405 Sum_probs=74.8
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-C-CCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-S-GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~-g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
...++|||+|||+++|+++|+++|+.|| |.+|++..+. + |+++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3567899999999999999999999999 9999999987 3 899999999999999999999 9999999999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
+.++
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9753
No 208
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.6e-17 Score=127.76 Aligned_cols=92 Identities=17% Similarity=0.359 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHH---HHHhcCCCEEEEEEEecCCCC---CcccEEEEEeCCHHHHHHHHHHcC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLY---DLFNQMGQVVSVRVCRDLSTR---RSLGYGYVNFSNAQEAARALEMLN 86 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~---~~f~~~G~v~~i~~~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~ 86 (507)
.+.........++|||+|||+++++++|+ ++|++||.|.+|.+..+..++ +++|||||+|.+.++|.+|++.||
T Consensus 5 s~~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 5 SSGASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp SSCSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 34455677788999999999999999999 999999999999999887644 456999999999999999999999
Q ss_pred CCCCCCcceEeecccCCc
Q 010577 87 FTPLNGKPIRVMYSHRDP 104 (507)
Q Consensus 87 ~~~~~g~~~~v~~~~~~~ 104 (507)
+..|.|++|+|.++....
T Consensus 85 g~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 85 NVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp TEEETTEEEEEESCCCCS
T ss_pred CCEECCEEEEEEeccccc
Confidence 999999999999988664
No 209
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=122.14 Aligned_cols=73 Identities=21% Similarity=0.350 Sum_probs=68.1
Q ss_pred cceEEecCCCCC------CHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCc-ceee
Q 010577 306 ANLYIKNLDDSI------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-PLYV 378 (507)
Q Consensus 306 ~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~-~i~v 378 (507)
++|||+|||+.+ |+++|+++|+.||.|.+|++. ..+|+++|||||+|.+.++|.+|++.|||..+.|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 579999999999 679999999999999999987 46888999999999999999999999999999999 8887
Q ss_pred e
Q 010577 379 A 379 (507)
Q Consensus 379 ~ 379 (507)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 4
No 210
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.2e-17 Score=125.87 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=69.6
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCc--eecCcceeeeh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGK--MVVSKPLYVAL 380 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~--~~~g~~i~v~~ 380 (507)
.+.++|||+|||+++++++|+++|++||.|.+|.+.++ +|||||+|++.++|.+|++.|++. .+.|+.|.|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 35678999999999999999999999999999999864 789999999999999999988754 58999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
++.+
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 9753
No 211
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=5.5e-17 Score=126.69 Aligned_cols=90 Identities=24% Similarity=0.357 Sum_probs=75.4
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
..........++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.+ +..+.|+
T Consensus 16 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp ----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 344556678899999999999999999999999999999999999888999999999999999999999976 4889999
Q ss_pred ceEeecccCCc
Q 010577 94 PIRVMYSHRDP 104 (507)
Q Consensus 94 ~~~v~~~~~~~ 104 (507)
.|+|.++....
T Consensus 95 ~l~V~~a~~~~ 105 (109)
T 2rs2_A 95 TIDPKVAFPRR 105 (109)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 99999887553
No 212
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5e-17 Score=123.63 Aligned_cols=84 Identities=17% Similarity=0.289 Sum_probs=73.6
Q ss_pred CCCCCCCceEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCC--CCCCc
Q 010577 17 NANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT--PLNGK 93 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~--~~~g~ 93 (507)
.....++++|||+|||+ +++++||+++|++||.|.+|.++++ ++||||+|.+.++|.+|++.|++. .|.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 9 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 33455789999999999 9999999999999999999999764 369999999999999999998864 48999
Q ss_pred ceEeecccCCccc
Q 010577 94 PIRVMYSHRDPSL 106 (507)
Q Consensus 94 ~~~v~~~~~~~~~ 106 (507)
+|+|.++......
T Consensus 83 ~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 83 PVRVHLSQKYKRI 95 (102)
T ss_dssp ECEEEEECCCTTS
T ss_pred EEEEEECCCCCCC
Confidence 9999999865443
No 213
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.2e-17 Score=125.99 Aligned_cols=80 Identities=29% Similarity=0.492 Sum_probs=72.3
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
++|||+|||.++++++|+++|+.||.|.+|++..+. +|+++|||||+|.+.+ |.+|++.|||..++|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999999887 6899999999999999 99999999999999999999999764
Q ss_pred HH
Q 010577 385 ED 386 (507)
Q Consensus 385 ~~ 386 (507)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 214
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=127.19 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=69.3
Q ss_pred cCCcceEEecCCCC-CCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCC--ceecCcceeee
Q 010577 303 FQGANLYIKNLDDS-IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG--KMVVSKPLYVA 379 (507)
Q Consensus 303 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~--~~~~g~~i~v~ 379 (507)
.++++|||+|||++ +|+++|+++|+.||.|.+|++.+ ++|||||+|++.++|.+|++.|++ ..+.|+.|+|.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35678999999998 99999999999999999999975 479999999999999999998864 56999999999
Q ss_pred hhhch
Q 010577 380 LAQRK 384 (507)
Q Consensus 380 ~~~~~ 384 (507)
|++.+
T Consensus 98 ~a~~~ 102 (112)
T 1x4f_A 98 LSEKY 102 (112)
T ss_dssp EECSC
T ss_pred ECccc
Confidence 99643
No 215
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=127.03 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=74.1
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeE-EEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITS-CKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++|||+|||+++|+++|+++|+.||.|.+ |+|..+.+|+++|||||+|.+.++|.+|++. |+..++|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECC
Confidence 4678999999999999999999999999987 8898888999999999999999999999987 9999999999999886
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
.
T Consensus 93 ~ 93 (104)
T 1wg5_A 93 R 93 (104)
T ss_dssp T
T ss_pred H
Confidence 4
No 216
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.4e-17 Score=127.92 Aligned_cols=80 Identities=35% Similarity=0.695 Sum_probs=75.4
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee--------cCcc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--------VSKP 375 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~--------~g~~ 375 (507)
..++|||+|||+++|+++|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..+ .++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~ 103 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 103 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999 5788
Q ss_pred eeeehhhc
Q 010577 376 LYVALAQR 383 (507)
Q Consensus 376 i~v~~~~~ 383 (507)
|.|+|+++
T Consensus 104 l~v~~a~p 111 (114)
T 1x5o_A 104 LLCKFSGP 111 (114)
T ss_dssp BEEEECCC
T ss_pred eeEEccCC
Confidence 99999875
No 217
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=120.33 Aligned_cols=76 Identities=29% Similarity=0.486 Sum_probs=72.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
++|||+|||.++++++|+++|++||.|.+|.+..+..+++++|+|||+|.+.++|.+|++.++ ..+.|++++|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998889999999999999999999999998 9999999999875
No 218
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.8e-17 Score=125.78 Aligned_cols=88 Identities=18% Similarity=0.323 Sum_probs=79.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEE-ecCCCCCcccEEEEEeCCHHHHHHHHHHcC--CCCCCCcc
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ-VVSVRVC-RDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGKP 94 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~-v~~i~~~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~ 94 (507)
.+..+++|||+|||.++++++|+++|+.||. |.+|.+. .+..+++++|||||+|.+.++|.+|++.|+ +..+.|++
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3557899999999999999999999999998 9999998 787788999999999999999999999996 58999999
Q ss_pred eEeecccCCccc
Q 010577 95 IRVMYSHRDPSL 106 (507)
Q Consensus 95 ~~v~~~~~~~~~ 106 (507)
|+|.++......
T Consensus 84 l~V~~a~~~~~~ 95 (109)
T 2dis_A 84 IAVDWAEPEIDV 95 (109)
T ss_dssp CEEEESCSSCST
T ss_pred EEEEEcCCCCCc
Confidence 999998866443
No 219
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-17 Score=120.65 Aligned_cols=75 Identities=32% Similarity=0.554 Sum_probs=71.5
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
++|||+|||+++++++|+++|+.||.|.+|++..+. +|+++|+|||+|.+.++|.+|++.++ ..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999986 78999999999999999999999999 9999999999886
No 220
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-17 Score=129.42 Aligned_cols=80 Identities=29% Similarity=0.430 Sum_probs=75.2
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. +++++|||||+|.+.++|.+|++.+++ .+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 456789999999999999999999999999999999986 789999999999999999999999998 899999999999
Q ss_pred hc
Q 010577 382 QR 383 (507)
Q Consensus 382 ~~ 383 (507)
..
T Consensus 94 ~~ 95 (116)
T 2cqd_A 94 YL 95 (116)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 221
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=129.42 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=78.6
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCE-EEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQV-VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v-~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
........++|||+|||+++++++|+++|+.||.| .+|.++.+. +++++|||||+|.+.++|.+|++. |+..|.|+.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~ 85 (114)
T 2cpy_A 8 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGRE 85 (114)
T ss_dssp CCSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEE
T ss_pred CCCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeE
Confidence 34456778999999999999999999999999999 889999997 899999999999999999999997 999999999
Q ss_pred eEeecccCC
Q 010577 95 IRVMYSHRD 103 (507)
Q Consensus 95 ~~v~~~~~~ 103 (507)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (114)
T 2cpy_A 86 AFVHVVTLE 94 (114)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999887643
No 222
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=4.1e-17 Score=131.60 Aligned_cols=82 Identities=22% Similarity=0.447 Sum_probs=77.2
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|.+..+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|+|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 356789999999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
.++
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 223
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=118.38 Aligned_cols=80 Identities=26% Similarity=0.485 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
....+++|||+|||.++++++|+++|+.||.|.+|.+. ++||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999997 3599999999999999999999999999999999
Q ss_pred cccCCccc
Q 010577 99 YSHRDPSL 106 (507)
Q Consensus 99 ~~~~~~~~ 106 (507)
++......
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 98866443
No 224
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=5.1e-17 Score=126.88 Aligned_cols=81 Identities=31% Similarity=0.521 Sum_probs=73.3
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.+ +..++|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 456789999999999999999999999999999999987 6999999999999999999999876 59999999999998
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
.++
T Consensus 102 ~~~ 104 (109)
T 2rs2_A 102 FPR 104 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 225
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.5e-17 Score=126.78 Aligned_cols=89 Identities=28% Similarity=0.433 Sum_probs=79.7
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.+.........++|||+|||.++++++|+++|++||.|.+|.+..+. +.++|||||+|.+.++|.+|++.|++..+.|
T Consensus 19 ~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 19 SHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp ---CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35666777889999999999999999999999999999999999874 4588999999999999999999999999999
Q ss_pred cceEeecccCC
Q 010577 93 KPIRVMYSHRD 103 (507)
Q Consensus 93 ~~~~v~~~~~~ 103 (507)
++|+|.++...
T Consensus 97 ~~l~V~~a~~~ 107 (109)
T 2err_A 97 RKIEVNNATAR 107 (109)
T ss_dssp EECEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999988754
No 226
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-16 Score=120.49 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=74.4
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC--Cc
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN--GK 93 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~ 93 (507)
......++++|||+|||.++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|++.||+..+. |+
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 10 GYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 3445667899999999999999999999999999999998754 569999999999999999999999999 99
Q ss_pred ceEeecccCC
Q 010577 94 PIRVMYSHRD 103 (507)
Q Consensus 94 ~~~v~~~~~~ 103 (507)
+|+|.++...
T Consensus 84 ~l~V~~a~~~ 93 (97)
T 1why_A 84 RLRVDFAKSG 93 (97)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999998765
No 227
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=3.9e-17 Score=130.17 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=74.3
Q ss_pred cCCcceEEecCCCCCCHHHHH----hcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceee
Q 010577 303 FQGANLYIKNLDDSIDDEKLK----QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v 378 (507)
.++++|||+||++.+++++|+ ++|+.||.|.+|.+.. +++++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 356789999999999999876 6999999999988753 5788999999999999999999999999999999999
Q ss_pred ehhhchHHH
Q 010577 379 ALAQRKEDR 387 (507)
Q Consensus 379 ~~~~~~~~~ 387 (507)
.|++.+...
T Consensus 105 ~~a~~~~~~ 113 (127)
T 2a3j_A 105 TFSETPQSQ 113 (127)
T ss_dssp EECCCCCHH
T ss_pred EEccCcchh
Confidence 999865543
No 228
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2e-16 Score=121.47 Aligned_cols=86 Identities=27% Similarity=0.515 Sum_probs=77.2
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
..........++|||+|||.++++++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|++.|++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 6 SGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp SCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 445556678899999999999999999999999999999999754 57999999999999999999999999999
Q ss_pred ceEeecccCCcc
Q 010577 94 PIRVMYSHRDPS 105 (507)
Q Consensus 94 ~~~v~~~~~~~~ 105 (507)
+|+|.++.....
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpj_A 80 QLRVRFACHSAS 91 (99)
T ss_dssp CCEEEESSCCSC
T ss_pred eEEEEEcCCCCC
Confidence 999999887643
No 229
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=4e-17 Score=129.38 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=77.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~---v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
.......++|||+|||+++++++|+++|+.||. |.+|+++.+.. ++++|||||+|.+.++|.+|++ +|+..|.|+
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 344567899999999999999999999999998 89999999876 9999999999999999999999 899999999
Q ss_pred ceEeecccC
Q 010577 94 PIRVMYSHR 102 (507)
Q Consensus 94 ~~~v~~~~~ 102 (507)
.|+|.++..
T Consensus 89 ~i~V~~a~~ 97 (118)
T 2db1_A 89 YIEVFKSHR 97 (118)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 999987653
No 230
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=126.90 Aligned_cols=85 Identities=16% Similarity=0.341 Sum_probs=75.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.....++++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|++.||+..|.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3455678999999999999999876 6999999999998753 57889999999999999999999999999999
Q ss_pred cceEeecccCCc
Q 010577 93 KPIRVMYSHRDP 104 (507)
Q Consensus 93 ~~~~v~~~~~~~ 104 (507)
++|+|.++....
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999988653
No 231
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-17 Score=134.65 Aligned_cols=82 Identities=35% Similarity=0.530 Sum_probs=76.9
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.|||..+.|+.|+|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 345789999999999999999999999999999999886 6889999999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
++.
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 232
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.5e-17 Score=126.04 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=72.6
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+|||+++|+++|+++|+.||.|.+|++..+ +.++|||||+|.+.++|.+|++.||+..++|+.|+|+|+++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 4578999999999999999999999999999999654 45789999999999999999999999999999999999975
No 233
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3e-17 Score=127.74 Aligned_cols=81 Identities=26% Similarity=0.460 Sum_probs=76.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|.+|++. |+..|+|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 456789999999999999999999999999999999996 789999999999999999999988 999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
.++
T Consensus 93 ~~~ 95 (105)
T 2dh8_A 93 TPR 95 (105)
T ss_dssp CCS
T ss_pred cCC
Confidence 754
No 234
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=5.7e-17 Score=128.42 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=74.9
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEE--EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVV--SVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~--~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
+.........++|||+|||+++++++|+++|+.| .|. +|.|+.+.. |+++|||||+|.+.++|.+|++. ++..|.
T Consensus 33 g~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~ 109 (126)
T 2hgm_A 33 GSNSADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIG 109 (126)
T ss_dssp --CTTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEEC
Confidence 4444556678999999999999999999999999 676 899999876 99999999999999999999995 778999
Q ss_pred CcceEeecccC
Q 010577 92 GKPIRVMYSHR 102 (507)
Q Consensus 92 g~~~~v~~~~~ 102 (507)
|+.|+|..+..
T Consensus 110 gR~I~V~~a~~ 120 (126)
T 2hgm_A 110 HRYIEVFKSSQ 120 (126)
T ss_dssp TBCCCCEEECH
T ss_pred CEEEEEEECCH
Confidence 99999977653
No 235
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.5e-17 Score=123.88 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=71.3
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||.++++++|+++|+.||.|.+|++.+ ++|||||+|.+.++|.+|++.|||..++|+.|+|+|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3467899999999999999999999999999999983 58999999999999999999999999999999999987
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 236
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=134.84 Aligned_cols=81 Identities=21% Similarity=0.400 Sum_probs=76.1
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeE--EEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCc----eecCcc
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITS--CKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGK----MVVSKP 375 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~----~~~g~~ 375 (507)
...++|||+|||+++|+++|+++|+.||.|.. |+|+.+. +|+++|||||+|.+. +|.+|++.|||. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45678999999999999999999999999977 9999998 899999999999999 999999999999 999999
Q ss_pred eeeehhhch
Q 010577 376 LYVALAQRK 384 (507)
Q Consensus 376 i~v~~~~~~ 384 (507)
|+|+++++.
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999753
No 237
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.68 E-value=6.4e-17 Score=119.11 Aligned_cols=73 Identities=14% Similarity=0.277 Sum_probs=68.1
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc-ce
Q 010577 23 TTSLYVGDLEANV------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK-PI 95 (507)
Q Consensus 23 ~~~l~V~nLp~~~------~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~~ 95 (507)
+++|||+|||..+ ++++|+++|++||.|.+|.+.+ .+++++|||||+|.+.++|.+|++.||+..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 7799999999999999999873 5789999999999999999999999999999999 88
Q ss_pred Ee
Q 010577 96 RV 97 (507)
Q Consensus 96 ~v 97 (507)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 238
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7e-17 Score=129.55 Aligned_cols=84 Identities=19% Similarity=0.326 Sum_probs=75.4
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeE-EEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITS-CKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++|||+|||+++|+++|+++|+.||.|.+ +.+..+.+|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 4578999999999999999999999999988 455555689999999999999999999998 99999999999999998
Q ss_pred chHHHH
Q 010577 383 RKEDRR 388 (507)
Q Consensus 383 ~~~~~~ 388 (507)
.+....
T Consensus 103 ~~~~~~ 108 (124)
T 1wel_A 103 KKGMLE 108 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766443
No 239
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=117.86 Aligned_cols=81 Identities=27% Similarity=0.479 Sum_probs=73.4
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc-CCCCCCCc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML-NFTPLNGK 93 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~g~ 93 (507)
.........++|||+|||.++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|++.| ++..+.|+
T Consensus 4 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 4 GSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 44456678899999999999999999999999999999999864 579999999999999999998 89999999
Q ss_pred ceEeeccc
Q 010577 94 PIRVMYSH 101 (507)
Q Consensus 94 ~~~v~~~~ 101 (507)
+|+|.+++
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99998864
No 240
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-17 Score=127.03 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=73.5
Q ss_pred CCcceEEecCCCCC------CHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCc-ce
Q 010577 304 QGANLYIKNLDDSI------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK-PL 376 (507)
Q Consensus 304 ~~~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~-~i 376 (507)
..++|||+|||+.+ |+++|+++|+.||.|.+|++. ..+|+++|||||+|.+.++|.+|++.|||..+.|+ .|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 35789999999999 789999999999999999998 46889999999999999999999999999999998 99
Q ss_pred eeehhhc
Q 010577 377 YVALAQR 383 (507)
Q Consensus 377 ~v~~~~~ 383 (507)
+|.++..
T Consensus 93 ~V~~a~~ 99 (105)
T 2nlw_A 93 RVNLFTD 99 (105)
T ss_dssp EEECSCC
T ss_pred EEEEcch
Confidence 9999864
No 241
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=5.5e-17 Score=130.44 Aligned_cols=78 Identities=22% Similarity=0.413 Sum_probs=74.0
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
.++|||+|||+++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 3579999999999999999999999999999999985 8899999999999999999999 8999999999999999874
No 242
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8.3e-17 Score=124.21 Aligned_cols=78 Identities=27% Similarity=0.399 Sum_probs=72.2
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++|+++|+++|+.||.| ++..+.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 356789999999999999999999999976 66667788999999999999999999999999999999999999997
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 90 ~ 90 (101)
T 2fc9_A 90 P 90 (101)
T ss_dssp S
T ss_pred C
Confidence 5
No 243
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=2.3e-16 Score=132.25 Aligned_cols=87 Identities=24% Similarity=0.413 Sum_probs=81.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
.....+++|||+|||.++++++|+++|+.||.|.+|.++.+..++.++|||||+|.+.++|.+|++.||+..|.|++|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34457899999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecccCCc
Q 010577 98 MYSHRDP 104 (507)
Q Consensus 98 ~~~~~~~ 104 (507)
.++....
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9997653
No 244
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=124.06 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=73.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
......++|||+|||+++++++|+++|+.| .|.+|.|+.+.. ++++|||||+|.+.++|.+|+ .+|+..+.|+.|.|
T Consensus 11 ~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 11 PINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEV 87 (109)
T ss_dssp CCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 344556899999999999999999999999 899999999865 999999999999999999999 58999999999999
Q ss_pred eccc
Q 010577 98 MYSH 101 (507)
Q Consensus 98 ~~~~ 101 (507)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 7664
No 245
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.9e-16 Score=122.81 Aligned_cols=86 Identities=22% Similarity=0.431 Sum_probs=77.5
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC-----
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL----- 90 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~----- 90 (507)
....+...++|||+|||.++++++|+++|+.||.|..|.+..+. ++.++|||||+|.+.++|.+|++.||+..+
T Consensus 18 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 18 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred hcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 34456678999999999999999999999999999999999997 899999999999999999999999999988
Q ss_pred ---CCcceEeecccC
Q 010577 91 ---NGKPIRVMYSHR 102 (507)
Q Consensus 91 ---~g~~~~v~~~~~ 102 (507)
.++++.|.++..
T Consensus 97 ~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 97 VSAPTEPLLCKFSGP 111 (114)
T ss_dssp SCCCSSCBEEEECCC
T ss_pred ccCCCCceeEEccCC
Confidence 466788877763
No 246
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.8e-17 Score=127.41 Aligned_cols=80 Identities=16% Similarity=0.252 Sum_probs=73.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
...+.+++|||+|||.++++++|+++|++||.|..|.+.. +++||||+|.+.++|.+|++.||+..|.|++|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 78 (111)
T 1whx_A 5 SSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYL 78 (111)
T ss_dssp GTSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3456789999999999999999999999999999998864 4579999999999999999999999999999999
Q ss_pred ecccCC
Q 010577 98 MYSHRD 103 (507)
Q Consensus 98 ~~~~~~ 103 (507)
.++...
T Consensus 79 ~~a~~~ 84 (111)
T 1whx_A 79 EWAPIG 84 (111)
T ss_dssp EEEETT
T ss_pred EECCCC
Confidence 998765
No 247
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=123.49 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=76.7
Q ss_pred CCCCCCceEEEcCCCCCC------CHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 18 ANQFGTTSLYVGDLEANV------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~------~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
.....+++|||+|||+.+ ++++|+++|++||.|.+|.+.+ .+++++|||||+|.+.++|.+|+..||+..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 345567899999999999 7899999999999999999983 57899999999999999999999999999999
Q ss_pred Cc-ceEeecccCCc
Q 010577 92 GK-PIRVMYSHRDP 104 (507)
Q Consensus 92 g~-~~~v~~~~~~~ 104 (507)
|+ +|+|.++...+
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 99 99999887543
No 248
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.4e-17 Score=124.33 Aligned_cols=79 Identities=30% Similarity=0.575 Sum_probs=74.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecccCC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSHRD 103 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~~~ 103 (507)
++|||+|||.++++++|+++|+.||.|.+|.+..+..+++++|||||+|.+.+ |.+|+..||+..+.|++|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 99999999999999999999998765
No 249
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.6e-17 Score=127.28 Aligned_cols=78 Identities=32% Similarity=0.521 Sum_probs=73.9
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
++|||+|||+++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++. ++..|+|+.|+|.++.++
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence 579999999999999999999999999999999986 689999999999999999999987 999999999999999754
No 250
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=1.2e-16 Score=134.05 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=76.9
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++|+++|+++|+.||.|.+|+|..+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999997 6889999999999999999999999999999999999999
Q ss_pred hc
Q 010577 382 QR 383 (507)
Q Consensus 382 ~~ 383 (507)
++
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 251
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=5.4e-17 Score=125.84 Aligned_cols=78 Identities=21% Similarity=0.170 Sum_probs=71.0
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCC-CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFG-SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++|||+|||+++|+++|+++|+.|| .|..+++..+ .++|||||+|++.++|.+|++.|||..++|+.|+|.+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 456899999999999999999999999 8999998543 378999999999999999999999999999999999987
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 252
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.3e-17 Score=128.88 Aligned_cols=83 Identities=31% Similarity=0.458 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
+...++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345689999999999999999999999999999999999888999999999999999999999 8999999999999998
Q ss_pred ccCC
Q 010577 100 SHRD 103 (507)
Q Consensus 100 ~~~~ 103 (507)
+...
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 7643
No 253
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1.7e-16 Score=127.53 Aligned_cols=81 Identities=22% Similarity=0.450 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
..++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999987
Q ss_pred CC
Q 010577 102 RD 103 (507)
Q Consensus 102 ~~ 103 (507)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 254
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=121.28 Aligned_cols=89 Identities=25% Similarity=0.459 Sum_probs=79.7
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
.........+++|||+|||.++++++|+++|+.| ..|.++.+..+++++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 6 SGPNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp CTTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4445667889999999999999999999999987 3677888888899999999999999999999999999999999
Q ss_pred ceEeecccCCcc
Q 010577 94 PIRVMYSHRDPS 105 (507)
Q Consensus 94 ~~~v~~~~~~~~ 105 (507)
+|+|.+++....
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 2fc8_A 83 KVTLDWAKPKGE 94 (102)
T ss_dssp ECEEEECCCCCS
T ss_pred EEEEEEecCCCC
Confidence 999999986643
No 255
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.5e-16 Score=118.99 Aligned_cols=85 Identities=18% Similarity=0.304 Sum_probs=74.4
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
.........+++|||+|||+++++++|+++|+.||.|. +.++.+ +++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 10 ~~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 10 SPPGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCCSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 33445566689999999999999999999999999986 666653 5678999999999999999999999999999
Q ss_pred ceEeecccCC
Q 010577 94 PIRVMYSHRD 103 (507)
Q Consensus 94 ~~~v~~~~~~ 103 (507)
+|+|.++...
T Consensus 85 ~l~V~~a~~~ 94 (97)
T 2e5j_A 85 TLRVALARQQ 94 (97)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999998764
No 256
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=3.8e-17 Score=132.14 Aligned_cols=85 Identities=16% Similarity=0.255 Sum_probs=73.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
.......++|||+|||+++++++|+++|+.|| |.+|.|+.+.. ++++|||||+|.+.++|.+|| .+|+..+.|+.|+
T Consensus 40 ~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 40 TVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp -----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 44566788999999999999999999999999 66999999975 999999999999999999999 6899999999999
Q ss_pred eecccCCc
Q 010577 97 VMYSHRDP 104 (507)
Q Consensus 97 v~~~~~~~ 104 (507)
|..+...+
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 98877553
No 257
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=121.86 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=71.1
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceec--Ccceeeehh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV--SKPLYVALA 381 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~--g~~i~v~~~ 381 (507)
+.++|||+|||.++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|++.|||..+. |+.|+|.|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 4578999999999999999999999999999999865 789999999999999999999999999 999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
+++
T Consensus 91 ~~~ 93 (97)
T 1why_A 91 KSG 93 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 258
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=1.2e-16 Score=124.38 Aligned_cols=79 Identities=25% Similarity=0.590 Sum_probs=72.1
Q ss_pred hccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 301 DKFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 301 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
.....++|||+|||+++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..++|+.|.|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567899999999999999999999999999999997 67999999999999999999999999999999999
Q ss_pred hhchHH
Q 010577 381 AQRKED 386 (507)
Q Consensus 381 ~~~~~~ 386 (507)
+++...
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 976543
No 259
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=119.45 Aligned_cols=74 Identities=19% Similarity=0.419 Sum_probs=69.8
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.||+..++|+.|+|++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 356789999999999999999999999999999997 5699999999999999999999999999999999997
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 79 ~ 79 (90)
T 2dnq_A 79 N 79 (90)
T ss_dssp C
T ss_pred C
Confidence 5
No 260
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=122.66 Aligned_cols=80 Identities=26% Similarity=0.408 Sum_probs=74.1
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||+++++++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 356789999999999999999999999999999999996 69999999999999999999997 578999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
.++
T Consensus 91 ~~~ 93 (103)
T 2cqg_A 91 NSK 93 (103)
T ss_dssp CTT
T ss_pred CCC
Confidence 754
No 261
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=7.7e-17 Score=125.52 Aligned_cols=85 Identities=11% Similarity=0.104 Sum_probs=77.8
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCC---EEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ---VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~---v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
........++|||+|||+++++++|+++|+.||. |.+|.+..+.. ++++|||||+|.+.++|.+|++ +|+..+.|
T Consensus 4 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (107)
T 2lmi_A 4 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQ 81 (107)
T ss_dssp CCCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSS
T ss_pred CcCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCC
Confidence 3456678899999999999999999999999987 89999999876 9999999999999999999999 89999999
Q ss_pred cceEeecccC
Q 010577 93 KPIRVMYSHR 102 (507)
Q Consensus 93 ~~~~v~~~~~ 102 (507)
+.|+|.++..
T Consensus 82 r~i~V~~a~~ 91 (107)
T 2lmi_A 82 RYVEVYEINN 91 (107)
T ss_dssp SCCCCEECCH
T ss_pred eEEEEEECCH
Confidence 9999987653
No 262
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=123.65 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcC--CCCCCCcceE
Q 010577 20 QFGTTSLYVGDLEAN-VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN--FTPLNGKPIR 96 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~~~ 96 (507)
..++++|||+|||++ +++++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|++.|+ +..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 567899999999998 99999999999999999999964 35799999999999999999886 4569999999
Q ss_pred eecccCCcc
Q 010577 97 VMYSHRDPS 105 (507)
Q Consensus 97 v~~~~~~~~ 105 (507)
|.++.....
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999876543
No 263
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.6e-17 Score=126.44 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=74.1
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCC-eeEEEEe-eCC-CCCCcceEEEEeCCHHHHHHHHHHhC--CceecCcceee
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGS-ITSCKVM-RDP-SGISRGSGFVAFSTPEEASRALLEMN--GKMVVSKPLYV 378 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~-~g~~~g~afv~f~~~~~A~~a~~~~~--~~~~~g~~i~v 378 (507)
..++|||+|||+++|+++|+++|+.||. |.+|.+. .+. +|.++|||||+|.+.++|.+|++.|| +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4678999999999999999999999998 9999998 555 67899999999999999999999996 58999999999
Q ss_pred ehhhch
Q 010577 379 ALAQRK 384 (507)
Q Consensus 379 ~~~~~~ 384 (507)
.|++++
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 999754
No 264
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=2.3e-16 Score=124.91 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=74.5
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..+++|||+|||+++|+++|+++|+.||.|.+|++..+ +.++|||||+|.+.++|.+|++.|||..++|+.|.|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 35678999999999999999999999999999999876 4568999999999999999999999999999999999998
Q ss_pred chH
Q 010577 383 RKE 385 (507)
Q Consensus 383 ~~~ 385 (507)
+..
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 643
No 265
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-16 Score=118.05 Aligned_cols=83 Identities=25% Similarity=0.459 Sum_probs=75.3
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
........+++|||+|||.++++++|+++|++||.|.+|.+.++ ||||+|.+.++|.+|++.||+..+.|+.
T Consensus 2 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 2 SSGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 34556778899999999999999999999999999999999743 9999999999999999999999999999
Q ss_pred eEeecccCCcc
Q 010577 95 IRVMYSHRDPS 105 (507)
Q Consensus 95 ~~v~~~~~~~~ 105 (507)
|+|.++.....
T Consensus 74 l~V~~a~~~~~ 84 (92)
T 2dgt_A 74 MHVQLSTSRLR 84 (92)
T ss_dssp EEEEESSCCCS
T ss_pred EEEEEccCCCC
Confidence 99999876543
No 266
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=122.37 Aligned_cols=76 Identities=28% Similarity=0.465 Sum_probs=71.4
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
.+.++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|||..++|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 35678999999999999999999999999999999864 7899999999999999999999999999999999997
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 267
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=4.9e-17 Score=125.51 Aligned_cols=88 Identities=20% Similarity=0.300 Sum_probs=78.1
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
.........++|||+|||.++++++|+++|+.||.|.. .++.+..+++++|||||+|.+.++|.+|++ ||+..|.|+.
T Consensus 9 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~ 86 (101)
T 1fj7_A 9 VEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNE 86 (101)
T ss_dssp CCSTTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBC
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcE
Confidence 34445667899999999999999999999999998887 566666778999999999999999999999 9999999999
Q ss_pred eEeecccCCc
Q 010577 95 IRVMYSHRDP 104 (507)
Q Consensus 95 ~~v~~~~~~~ 104 (507)
|+|.++....
T Consensus 87 l~V~~a~~~~ 96 (101)
T 1fj7_A 87 IKLEKPKGRD 96 (101)
T ss_dssp CEEECCSCCC
T ss_pred EEEEEcCCCC
Confidence 9999987654
No 268
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=3.7e-16 Score=120.90 Aligned_cols=84 Identities=23% Similarity=0.442 Sum_probs=74.7
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 15 GANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 15 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
........+++|||+|||.++++++|+++|+.||.|.+|.+.+ +||||+|.+.++|.+|++.||+..|.|+.
T Consensus 3 ~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 3 SGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 3444556789999999999999999999999999999999864 38999999999999999999999999999
Q ss_pred eEeecccCCccc
Q 010577 95 IRVMYSHRDPSL 106 (507)
Q Consensus 95 ~~v~~~~~~~~~ 106 (507)
|+|.++......
T Consensus 75 l~v~~a~~~~~~ 86 (103)
T 2dgu_A 75 IEIVFAKPPDQK 86 (103)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEcCCCccc
Confidence 999998765443
No 269
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=128.56 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=76.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
......++|||+|||+++++++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|.+|++ +|+..|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 445567999999999999999999999999999886666777789999999999999999999999 9999999999999
Q ss_pred ecccCC
Q 010577 98 MYSHRD 103 (507)
Q Consensus 98 ~~~~~~ 103 (507)
.++...
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 877643
No 270
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=117.90 Aligned_cols=75 Identities=27% Similarity=0.420 Sum_probs=70.2
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHh-CCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM-NGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~-~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||.++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.| ++..++|+.|+|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 45678999999999999999999999999999999874 789999999999999999988 999999999999997
Q ss_pred h
Q 010577 382 Q 382 (507)
Q Consensus 382 ~ 382 (507)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 271
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.3e-16 Score=123.71 Aligned_cols=82 Identities=22% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
.....++|||+|||+++++++|+++|+.|| .|..+.+.. ++++|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 455678999999999999999999999999 899998853 347889999999999999999999999999999999
Q ss_pred ecccCCc
Q 010577 98 MYSHRDP 104 (507)
Q Consensus 98 ~~~~~~~ 104 (507)
.++...+
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 9887553
No 272
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=9.5e-17 Score=127.13 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=73.4
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCee--EEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSIT--SCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
...++|||+|||+++|+++|+++|+.| .|. +|+|..+.+|+++|||||+|++.++|.+|++ +++..|+|+.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 346789999999999999999999999 677 8999999889999999999999999999997 477999999999998
Q ss_pred hhchH
Q 010577 381 AQRKE 385 (507)
Q Consensus 381 ~~~~~ 385 (507)
+..++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86544
No 273
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=123.42 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=70.4
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecC-----cceee
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-----KPLYV 378 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g-----~~i~v 378 (507)
..++|||+|||+++|+++|+++|+.||.|.+|++..+ |||||+|++.++|.+|++.|||..|.| +.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4578999999999999999999999999999999886 799999999999999999999999999 99999
Q ss_pred ehhhc
Q 010577 379 ALAQR 383 (507)
Q Consensus 379 ~~~~~ 383 (507)
+++.+
T Consensus 88 ~~a~~ 92 (108)
T 1x4c_A 88 KVDGP 92 (108)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 99976
No 274
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.8e-16 Score=124.59 Aligned_cols=86 Identities=23% Similarity=0.423 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
....++|||+|||.++++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+|++. ++..|.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34458999999999999999999999999999999999988999999999999999999999997 99999999999999
Q ss_pred ccCCccc
Q 010577 100 SHRDPSL 106 (507)
Q Consensus 100 ~~~~~~~ 106 (507)
+......
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 8766443
No 275
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=9.7e-16 Score=111.26 Aligned_cols=76 Identities=29% Similarity=0.341 Sum_probs=66.8
Q ss_pred CCCceEEEcCCCCCCCHHH----HHHHHhcC-CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 21 FGTTSLYVGDLEANVTDSQ----LYDLFNQM-GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~----l~~~f~~~-G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
...++|||+|||..+++++ |+++|+.| |+|.+| ++ |+|||.|.+.++|.+|++.|++..+.||++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3444499999999999998 55899999 599998 23 799999999999999999999999999999
Q ss_pred EeecccCCccc
Q 010577 96 RVMYSHRDPSL 106 (507)
Q Consensus 96 ~v~~~~~~~~~ 106 (507)
+|.+++.....
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999877554
No 276
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=130.31 Aligned_cols=79 Identities=33% Similarity=0.510 Sum_probs=74.2
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
...++|||+|||.++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.|||..+.|+.|+|+||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 356789999999999999999999999999999999985 7899999999999999999999999999999999999986
No 277
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=3e-16 Score=119.57 Aligned_cols=76 Identities=25% Similarity=0.481 Sum_probs=70.4
Q ss_pred ccCCcceEEecCCC-CCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 302 KFQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 302 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
..+.++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..++|+.|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44678899999998 99999999999999999999983 68999999999999999999999999999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
++..
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8753
No 278
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=4.8e-17 Score=124.62 Aligned_cols=82 Identities=35% Similarity=0.536 Sum_probs=74.9
Q ss_pred cCCcceEEecCCCCCCHHHHH----hcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceee
Q 010577 303 FQGANLYIKNLDDSIDDEKLK----QLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v 378 (507)
.++++|||+|||.++++++|+ ++|+.||.|.+|++.. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 456789999999999999999 9999999999999874 4667899999999999999999999999999999999
Q ss_pred ehhhchHH
Q 010577 379 ALAQRKED 386 (507)
Q Consensus 379 ~~~~~~~~ 386 (507)
.|+++...
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99986544
No 279
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=123.13 Aligned_cols=78 Identities=27% Similarity=0.520 Sum_probs=73.1
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
....++|||+|||.++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 446778999999999999999999999999999999886 789999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
++.
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 280
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=3.8e-16 Score=132.04 Aligned_cols=89 Identities=20% Similarity=0.315 Sum_probs=81.3
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
.......+++|||+|||+.+++++|+++|+.||.|..|.+..+..++.++|||||+|.+.++|.+||..||+..|.|+.|
T Consensus 65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EeecccCCc
Q 010577 96 RVMYSHRDP 104 (507)
Q Consensus 96 ~v~~~~~~~ 104 (507)
.|.++....
T Consensus 145 ~V~~a~~~~ 153 (165)
T 1rk8_A 145 QVDWCFVKG 153 (165)
T ss_dssp EEEESEECC
T ss_pred EEEEecCCC
Confidence 999987653
No 281
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=116.74 Aligned_cols=81 Identities=28% Similarity=0.488 Sum_probs=73.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
.......++|||+|||.++++++|+++|+.||.|.+|.+.++ ||||+|.+.++|.+|++.||+..+.|++|+
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 345678899999999999999999999999999999999743 899999999999999999999999999999
Q ss_pred eecccCCcc
Q 010577 97 VMYSHRDPS 105 (507)
Q Consensus 97 v~~~~~~~~ 105 (507)
|.++.....
T Consensus 75 v~~a~~~~~ 83 (90)
T 2dnp_A 75 VELSTKGQK 83 (90)
T ss_dssp EEESCCCCC
T ss_pred EEECCCCCC
Confidence 999886643
No 282
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.8e-16 Score=120.47 Aligned_cols=78 Identities=19% Similarity=0.421 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
....+++|||+|||.++++++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567999999999999999999999999999999997 346799999999999999999999999999999999
Q ss_pred cccC
Q 010577 99 YSHR 102 (507)
Q Consensus 99 ~~~~ 102 (507)
+++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 8764
No 283
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=124.71 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCE----EEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQV----VSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v----~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
....++|||+|||+++++++|+++|+.||.| .+|.++.+ .+++++|||||+|.+.++|.+|++. |+..+.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4677999999999999999999999999875 68999988 5899999999999999999999996 8899999988
Q ss_pred Eeeccc
Q 010577 96 RVMYSH 101 (507)
Q Consensus 96 ~v~~~~ 101 (507)
.|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 886543
No 284
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=5.2e-17 Score=131.36 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=74.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++|+++|+++|+.|| |.+|+|+.+.+|+++|||||+|++.++|.+|+ .+|+..+.|+.|+|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3457899999999999999999999999 77999999989999999999999999999999 889999999999999886
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 285
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=6e-17 Score=117.52 Aligned_cols=74 Identities=20% Similarity=0.360 Sum_probs=69.5
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
+|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++ +++..++|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999886 68899999999999999999997 4899999999999875
No 286
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=1.1e-15 Score=125.31 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=72.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC--cceE
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG--KPIR 96 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~~~ 96 (507)
.+....+|||+||++.+++++|+++|++||.|++|.+..+ +++|||||+|.+.++|.+|++.||+..|.| ++|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 3445567899999999999999999999999999999754 256799999999999999999999999966 9999
Q ss_pred eecccCCc
Q 010577 97 VMYSHRDP 104 (507)
Q Consensus 97 v~~~~~~~ 104 (507)
|.+++...
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99998664
No 287
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.9e-16 Score=120.74 Aligned_cols=82 Identities=26% Similarity=0.555 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
.....++|||+|||.++++++|+++|+.||.|.+|.+..+ +|||||+|.+.++|.+|++.|++..|.|++|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556899999999999999999999999999999999875 5799999999999999999999999999999999
Q ss_pred cccCCccc
Q 010577 99 YSHRDPSL 106 (507)
Q Consensus 99 ~~~~~~~~ 106 (507)
++......
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99876544
No 288
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=123.29 Aligned_cols=75 Identities=25% Similarity=0.510 Sum_probs=71.2
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
++|||+|||+++|+++|+++|+.||.|.+|++..+ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999987 7899999999999999999999999999999999999753
No 289
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=1.1e-16 Score=116.18 Aligned_cols=75 Identities=16% Similarity=0.426 Sum_probs=70.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeecc
Q 010577 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYS 100 (507)
Q Consensus 25 ~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~ 100 (507)
+|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++. ++..+.|+.++|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999988899999999999999999999995 888999999998764
No 290
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=3e-16 Score=139.50 Aligned_cols=82 Identities=18% Similarity=0.385 Sum_probs=76.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCC--CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMG--QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G--~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
..++|||+|||+++++++|+++|+.|| .|.+|+|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 678899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q 010577 100 SHRD 103 (507)
Q Consensus 100 ~~~~ 103 (507)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 7643
No 291
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-16 Score=123.42 Aligned_cols=75 Identities=24% Similarity=0.312 Sum_probs=70.1
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+|||+++|+++|+++|+.||.|.+|.+.. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 356899999999999999999999999999999875 478999999999999999999999999999999999864
No 292
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=6.2e-16 Score=120.28 Aligned_cols=84 Identities=25% Similarity=0.503 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 13 GGGANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 13 ~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.......+..+++|||+|||.++++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++.||+..+.|
T Consensus 21 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 21 MHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp -------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred cccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34556677889999999999999999999999999999999997 4699999999999999999999999999
Q ss_pred cceEeecccCCc
Q 010577 93 KPIRVMYSHRDP 104 (507)
Q Consensus 93 ~~~~v~~~~~~~ 104 (507)
++|+|.++....
T Consensus 93 ~~l~V~~a~~~~ 104 (108)
T 2jvo_A 93 QPLEVVYSKLPA 104 (108)
T ss_dssp EECEEESCSCCC
T ss_pred eEEEEEEecCCC
Confidence 999999987653
No 293
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-16 Score=124.58 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=76.2
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
.......+++|||+|||.++++++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 18 SYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred ccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34445678999999999999999999999999988433222222378889999999999999999999999999999999
Q ss_pred EeecccCCccc
Q 010577 96 RVMYSHRDPSL 106 (507)
Q Consensus 96 ~v~~~~~~~~~ 106 (507)
+|.++......
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 99998866443
No 294
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=4.6e-16 Score=122.81 Aligned_cols=75 Identities=19% Similarity=0.360 Sum_probs=69.0
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcce-EEEEeCCHHHHHHHHHHhCCceecC--cceeeehhh
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS-GFVAFSTPEEASRALLEMNGKMVVS--KPLYVALAQ 382 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~-afv~f~~~~~A~~a~~~~~~~~~~g--~~i~v~~~~ 382 (507)
..|||+||++.+|+++|+++|++||.|.+|++..+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 35889999999999999999999999999999875 3677 9999999999999999999999998 899999997
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
..
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 295
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=118.18 Aligned_cols=74 Identities=20% Similarity=0.442 Sum_probs=69.6
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|.+|++.|||..+.|+.|+|++++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45678999999999999999999999999999999754 99999999999999999999999999999999997
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 81 ~ 81 (92)
T 2dgt_A 81 S 81 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 296
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.1e-16 Score=118.89 Aligned_cols=77 Identities=25% Similarity=0.437 Sum_probs=70.1
Q ss_pred ccCCcceEEecCCC-CCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 302 KFQGANLYIKNLDD-SIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 302 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
..+.++|||+|||+ ++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34677899999998 99999999999999999999994 67999999999999999999999999999999999
Q ss_pred hhchH
Q 010577 381 AQRKE 385 (507)
Q Consensus 381 ~~~~~ 385 (507)
++...
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 97543
No 297
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=8.9e-16 Score=116.98 Aligned_cols=82 Identities=22% Similarity=0.431 Sum_probs=71.2
Q ss_pred CCCCCCCCCCceEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 14 GGANANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
.........+++|||+|||. ++++++|+++|+.||.|.+|.+. +|||||+|.+.++|.+|++.||+..+.|
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 13 GLVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp ------CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred ccccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 44556677899999999998 99999999999999999999983 5799999999999999999999999999
Q ss_pred cceEeecccCC
Q 010577 93 KPIRVMYSHRD 103 (507)
Q Consensus 93 ~~~~v~~~~~~ 103 (507)
++|+|.+++..
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999988754
No 298
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=2.2e-16 Score=120.88 Aligned_cols=84 Identities=24% Similarity=0.520 Sum_probs=75.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----HHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLY----DLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~----~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
.+..++++|||+|||.++++++|+ ++|+.||.|.+|.+.+ ++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 356788999999999999999999 9999999999999874 467789999999999999999999999999999
Q ss_pred ceEeecccCCc
Q 010577 94 PIRVMYSHRDP 104 (507)
Q Consensus 94 ~~~v~~~~~~~ 104 (507)
.|+|.++....
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999988663
No 299
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.2e-16 Score=120.57 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=72.3
Q ss_pred cceEEecC----CCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCC----HHH----HHHHHH--HhCCce
Q 010577 306 ANLYIKNL----DDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFST----PEE----ASRALL--EMNGKM 370 (507)
Q Consensus 306 ~~l~v~~l----~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~----~~~----A~~a~~--~~~~~~ 370 (507)
+.|||+|| ++.+++++|+++|+.||.|.+|.++.|+ +|+++|||||+|.+ .++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999998 89999999999996 333 889988 789999
Q ss_pred ecCcceeeehhhchHH
Q 010577 371 VVSKPLYVALAQRKED 386 (507)
Q Consensus 371 ~~g~~i~v~~~~~~~~ 386 (507)
|+|+.|+|.+.+....
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999875443
No 300
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.8e-16 Score=120.16 Aligned_cols=77 Identities=23% Similarity=0.375 Sum_probs=70.0
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+|||+++|+++|+++|+.||.|. +++..+ +++|||||+|.+.++|.+|++.|||..++|+.|+|.++++
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 467899999999999999999999999997 666643 5789999999999999999999999999999999999975
Q ss_pred h
Q 010577 384 K 384 (507)
Q Consensus 384 ~ 384 (507)
+
T Consensus 94 ~ 94 (97)
T 2e5j_A 94 Q 94 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 301
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=3e-17 Score=160.01 Aligned_cols=80 Identities=19% Similarity=0.399 Sum_probs=76.3
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
+.++|||+||++.+|+++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45789999999999999999999999999999999986 88999999999999999999999999999999999999997
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
.
T Consensus 181 ~ 181 (437)
T 3pgw_S 181 G 181 (437)
T ss_pred C
Confidence 4
No 302
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.7e-16 Score=119.37 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=72.3
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
....++|||+|||+++|+++|+++|+.| .+|+++.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456789999999999999999999977 367777775 888999999999999999999999999999999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
++++
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9753
No 303
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=3.8e-16 Score=132.93 Aligned_cols=81 Identities=30% Similarity=0.484 Sum_probs=77.1
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..+++|||+|||+++++++|+++|+.||.|.+|.+..+.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 35678999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
.
T Consensus 166 ~ 166 (177)
T 2f3j_A 166 S 166 (177)
T ss_dssp S
T ss_pred C
Confidence 4
No 304
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-17 Score=131.35 Aligned_cols=83 Identities=24% Similarity=0.489 Sum_probs=77.1
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeE--------EEEeeCC-CCCCcceEEEEeCCHHHHHHHHHHhCCceecCc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITS--------CKVMRDP-SGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~-~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~ 374 (507)
+.++|||+|||+++++++|+++|+.||.|.+ |++..+. +++++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4568999999999999999999999999999 8898885 789999999999999999999999999999999
Q ss_pred ceeeehhhchHH
Q 010577 375 PLYVALAQRKED 386 (507)
Q Consensus 375 ~i~v~~~~~~~~ 386 (507)
.|+|.+++++..
T Consensus 86 ~l~V~~a~~~~~ 97 (116)
T 2lcw_A 86 PIKVSFATRRAD 97 (116)
Confidence 999999986544
No 305
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=3.5e-16 Score=128.31 Aligned_cols=76 Identities=18% Similarity=0.352 Sum_probs=69.7
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecC--cceeeehhhc
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS--KPLYVALAQR 383 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g--~~i~v~~~~~ 383 (507)
.+|||+||++.+|+++|+++|++||.|++|+++.+. ++|||||+|++.++|.+|++.|||..|.| +.|+|+|+++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 468999999999999999999999999999997653 57899999999999999999999999965 9999999986
Q ss_pred h
Q 010577 384 K 384 (507)
Q Consensus 384 ~ 384 (507)
+
T Consensus 124 ~ 124 (164)
T 1sjr_A 124 T 124 (164)
T ss_dssp S
T ss_pred C
Confidence 4
No 306
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=9.4e-16 Score=130.47 Aligned_cols=84 Identities=26% Similarity=0.443 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
....+++|||+|||+++++++|+++|+.||.|.+|.+..+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred cccCC
Q 010577 99 YSHRD 103 (507)
Q Consensus 99 ~~~~~ 103 (507)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98755
No 307
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.2e-16 Score=117.36 Aligned_cols=74 Identities=26% Similarity=0.494 Sum_probs=69.5
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|||+++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 45678999999999999999999999999999999754 99999999999999999999999999999999997
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 80 ~ 80 (90)
T 2dnp_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 5
No 308
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=116.68 Aligned_cols=83 Identities=24% Similarity=0.257 Sum_probs=73.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV-RVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i-~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
......+++|||+|||+++++++|+++|+.||.|.+| .+..+..++ .|||+|.+.++|.+|++.||+..+.|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 9 VPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3444568999999999999999999999999999999 477765443 39999999999999999999999999999
Q ss_pred EeecccCC
Q 010577 96 RVMYSHRD 103 (507)
Q Consensus 96 ~v~~~~~~ 103 (507)
+|.++...
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99998765
No 309
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=1e-15 Score=116.60 Aligned_cols=79 Identities=23% Similarity=0.446 Sum_probs=70.3
Q ss_pred CCCCCCceEEEcCCCC-CCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 18 ANQFGTTSLYVGDLEA-NVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~-~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
....++++|||+|||+ ++++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++.||+..+.|++|+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4567899999999998 99999999999999999999984 46999999999999999999999999999999
Q ss_pred eecccCCc
Q 010577 97 VMYSHRDP 104 (507)
Q Consensus 97 v~~~~~~~ 104 (507)
|.++....
T Consensus 77 V~~a~~~~ 84 (96)
T 2kvi_A 77 LEVSSSNA 84 (96)
T ss_dssp EEEEECCC
T ss_pred EEEcCcCC
Confidence 99987553
No 310
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.63 E-value=1.4e-15 Score=119.28 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=72.1
Q ss_pred CCCCCCceEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 18 ANQFGTTSLYVGDLEAN-VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
.....+++|||+|||++ +++++|+++|++||.|.+|.+ ++|||||+|.+.++|.+|++.||+..|.|++|+
T Consensus 22 ~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 22 DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34456689999999999 999999999999999999998 357999999999999999999999999999999
Q ss_pred eecccCCcc
Q 010577 97 VMYSHRDPS 105 (507)
Q Consensus 97 v~~~~~~~~ 105 (507)
|.++.....
T Consensus 94 V~~a~~~~~ 102 (110)
T 1wf1_A 94 INMAGEPKP 102 (110)
T ss_dssp EEESCCCCS
T ss_pred EEECCCCCC
Confidence 999875443
No 311
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-16 Score=121.57 Aligned_cols=76 Identities=21% Similarity=0.427 Sum_probs=68.6
Q ss_pred cCCcceEE--ecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee-----cCcc
Q 010577 303 FQGANLYI--KNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-----VSKP 375 (507)
Q Consensus 303 ~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~-----~g~~ 375 (507)
.++++||| +||++++|+++|+++|++||.|.+|.+..+ +|||||+|++.++|.+|++.|||..+ .|+.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 35678999 669999999999999999999999988643 78999999999999999999999998 6899
Q ss_pred eeeehhhc
Q 010577 376 LYVALAQR 383 (507)
Q Consensus 376 i~v~~~~~ 383 (507)
|.|.|+..
T Consensus 98 l~v~~a~~ 105 (114)
T 2cq2_A 98 LYLNFVEK 105 (114)
T ss_dssp CEEEEESC
T ss_pred EEEEeccc
Confidence 99999863
No 312
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=6.6e-16 Score=115.62 Aligned_cols=74 Identities=20% Similarity=0.338 Sum_probs=69.0
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+|||+++++++|+++|+.| .|.+|++. +++|||||+|.+.++|.+|++.|||..++|+.|+|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 45689999999999999999999999 99999985 4789999999999999999999999999999999999853
No 313
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4e-16 Score=123.57 Aligned_cols=78 Identities=31% Similarity=0.496 Sum_probs=70.8
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCe----eEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSI----TSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
+.++|||+|||+++|+++|+++|+.||.| ..+++. +|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 56789999999999999999999999998 455544 67889999999999999999999999999999999999
Q ss_pred hhhch
Q 010577 380 LAQRK 384 (507)
Q Consensus 380 ~~~~~ 384 (507)
|+++.
T Consensus 101 ~a~~~ 105 (115)
T 2cpx_A 101 FGKNK 105 (115)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 99753
No 314
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.3e-16 Score=111.60 Aligned_cols=69 Identities=26% Similarity=0.413 Sum_probs=62.8
Q ss_pred ceEEecCCCCCCHHH----HHhcccCC-CCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 307 NLYIKNLDDSIDDEK----LKQLFSPF-GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~----l~~~f~~~-g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
.|||+|||+.+++++ |+++|+.| |.|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||.|+|+|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 499999999999988 55899999 599999 22 89999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
+..
T Consensus 82 ~~~ 84 (96)
T 2diu_A 82 PKN 84 (96)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 315
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.2e-15 Score=114.06 Aligned_cols=84 Identities=29% Similarity=0.454 Sum_probs=74.6
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHhcC--CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 14 GGANANQFGTTSLYVGDLEANVTDSQLYDLFNQM--GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~--G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
..+......+++|||+|||+++++++|+++|+.| |.|..|.+. +|||||+|.+.++|.+|+..||+..|.
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 6 SGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3445566778999999999999999999999999 899999874 359999999999999999999999999
Q ss_pred CcceEeecccCCcc
Q 010577 92 GKPIRVMYSHRDPS 105 (507)
Q Consensus 92 g~~~~v~~~~~~~~ 105 (507)
|++|+|.++.....
T Consensus 78 g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 78 GSPIEVTLAKPVDK 91 (99)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999886543
No 316
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=9.6e-16 Score=114.71 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
++.+++|||+|||+++++++|+++|++| .|.+|.+. +++|||||+|.+.++|.+|++.||+..+.|++++|.+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3578999999999999999999999999 99999884 5678999999999999999999999999999999999
Q ss_pred ccCCc
Q 010577 100 SHRDP 104 (507)
Q Consensus 100 ~~~~~ 104 (507)
+..+.
T Consensus 75 a~~~~ 79 (88)
T 1wg1_A 75 QPTDA 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 87764
No 317
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.5e-15 Score=113.37 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=72.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 17 NANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
......+++|||+|| ++++++|+++|++||.|.+|.+. +++|||||+|.+.++|.+|++.||+..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345567899999996 89999999999999999999984 4567999999999999999999999999999999
Q ss_pred eecccCCccc
Q 010577 97 VMYSHRDPSL 106 (507)
Q Consensus 97 v~~~~~~~~~ 106 (507)
|.++......
T Consensus 81 v~~a~~~~~~ 90 (97)
T 1x5p_A 81 VNIARKQPML 90 (97)
T ss_dssp EECCSSCCCC
T ss_pred EEECCCCCCC
Confidence 9998766443
No 318
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=6.5e-16 Score=119.55 Aligned_cols=74 Identities=27% Similarity=0.525 Sum_probs=69.3
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+|||+++|+++|+++|+.||.|.+|++.+ +||||+|.+.++|.+|++.||+..+.|+.|+|.|+++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 457899999999999999999999999999999874 4999999999999999999999999999999999975
Q ss_pred h
Q 010577 384 K 384 (507)
Q Consensus 384 ~ 384 (507)
.
T Consensus 83 ~ 83 (103)
T 2dgu_A 83 P 83 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 319
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=3.7e-17 Score=129.65 Aligned_cols=88 Identities=24% Similarity=0.448 Sum_probs=81.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVS--------VRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~--------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 90 (507)
....+++|||+|||.++++++|+++|+.||.|.+ |.+..+..+++++|||||+|.+.++|.+|++.||+..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999998 89999888899999999999999999999999999999
Q ss_pred CCcceEeecccCCccc
Q 010577 91 NGKPIRVMYSHRDPSL 106 (507)
Q Consensus 91 ~g~~~~v~~~~~~~~~ 106 (507)
.|++|+|.++......
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999998766443
No 320
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.2e-16 Score=116.32 Aligned_cols=80 Identities=30% Similarity=0.467 Sum_probs=70.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCC-EEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCC-CCCCCcceE
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQ-VVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF-TPLNGKPIR 96 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~-v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~~~ 96 (507)
.....++|||+|||.++++++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..+.|++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4567899999999999999999999999998 6666553 357999999999999999999999 999999999
Q ss_pred eecccCCcc
Q 010577 97 VMYSHRDPS 105 (507)
Q Consensus 97 v~~~~~~~~ 105 (507)
|.++.....
T Consensus 77 v~~a~~~~~ 85 (93)
T 2cqh_A 77 VDYSVSKKL 85 (93)
T ss_dssp EEECCCCCC
T ss_pred EEEccCccc
Confidence 999876543
No 321
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-16 Score=120.61 Aligned_cols=77 Identities=23% Similarity=0.384 Sum_probs=70.3
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 45689999999999999999999999988776 44677899999999999999999999999999999999999875
Q ss_pred h
Q 010577 384 K 384 (507)
Q Consensus 384 ~ 384 (507)
+
T Consensus 91 ~ 91 (96)
T 1fjc_A 91 K 91 (96)
T ss_dssp S
T ss_pred C
Confidence 3
No 322
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=6.3e-17 Score=124.90 Aligned_cols=79 Identities=24% Similarity=0.353 Sum_probs=71.3
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeC-CCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRD-PSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++|||+|||+++|+++|+++|+.||.|.+ .++.+ .+|+++|||||+|.+.++|.+|++ |||..+.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4578999999999999999999999999888 44444 478899999999999999999998 99999999999999997
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
++
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 323
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=113.42 Aligned_cols=79 Identities=23% Similarity=0.341 Sum_probs=70.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
.....++|||+|||+++++++|+++|+.||.|.+| +.+..+++ ||||+|.+.++|.+|++ |++..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 45567899999999999999999999999999988 45545555 99999999999999999 99999999999999
Q ss_pred cccCC
Q 010577 99 YSHRD 103 (507)
Q Consensus 99 ~~~~~ 103 (507)
++...
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 87644
No 324
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=3.3e-16 Score=121.05 Aligned_cols=80 Identities=24% Similarity=0.507 Sum_probs=74.8
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+|||+++|+++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|.+|++ ++..++|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4568999999999999999999999999999999999999999999999999999999997 99999999999999875
Q ss_pred hH
Q 010577 384 KE 385 (507)
Q Consensus 384 ~~ 385 (507)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 325
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.2e-15 Score=113.97 Aligned_cols=76 Identities=18% Similarity=0.414 Sum_probs=63.0
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee--cCcceeeeh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV--VSKPLYVAL 380 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~--~g~~i~v~~ 380 (507)
...++|||+|||+++|+++|+++|++||.|.+|++..+ ++|||||+|++.++|.+ +++..+ .|+.|.|.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 45678999999999999999999999999999999886 78999999999999883 566554 589999999
Q ss_pred hhchHH
Q 010577 381 AQRKED 386 (507)
Q Consensus 381 ~~~~~~ 386 (507)
+.++..
T Consensus 81 a~~k~~ 86 (89)
T 3d2w_A 81 AEPKHN 86 (89)
T ss_dssp CC----
T ss_pred cCCCCc
Confidence 986554
No 326
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.8e-15 Score=119.10 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=66.7
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcce-EEEEeCCHHHHHHHHHHhCCceecC--cceeeehhhc
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGS-GFVAFSTPEEASRALLEMNGKMVVS--KPLYVALAQR 383 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~-afv~f~~~~~A~~a~~~~~~~~~~g--~~i~v~~~~~ 383 (507)
.|||+||++.+|+++|+++|++||.|.+|+++.. .|| |||+|++.++|.+|++.|||..|.| +.|+|.|+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 4689999999999999999999999999999763 376 9999999999999999999999987 6899999975
Q ss_pred h
Q 010577 384 K 384 (507)
Q Consensus 384 ~ 384 (507)
+
T Consensus 102 ~ 102 (124)
T 2e5i_A 102 T 102 (124)
T ss_dssp S
T ss_pred C
Confidence 4
No 327
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=6.1e-16 Score=118.11 Aligned_cols=83 Identities=19% Similarity=0.386 Sum_probs=74.9
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
........++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|++..+.|++|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 45567789999999999999999999999999988766 2468899999999999999999999999999999999
Q ss_pred EeecccCC
Q 010577 96 RVMYSHRD 103 (507)
Q Consensus 96 ~v~~~~~~ 103 (507)
+|.++...
T Consensus 84 ~v~~a~~~ 91 (96)
T 1fjc_A 84 SLYYTGEK 91 (96)
T ss_dssp EEEECSSS
T ss_pred EEEEcCCC
Confidence 99998755
No 328
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-16 Score=118.07 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=68.1
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCC-eeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCC-ceecCcceeeeh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGS-ITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNG-KMVVSKPLYVAL 380 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~-~~~~g~~i~v~~ 380 (507)
...++|||+|||+++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 35678999999999999999999999999 6666663 478999999999999999999999 999999999999
Q ss_pred hhc
Q 010577 381 AQR 383 (507)
Q Consensus 381 ~~~ 383 (507)
+++
T Consensus 80 a~~ 82 (93)
T 2cqh_A 80 SVS 82 (93)
T ss_dssp CCC
T ss_pred ccC
Confidence 975
No 329
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=1.3e-15 Score=120.13 Aligned_cols=71 Identities=23% Similarity=0.291 Sum_probs=62.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
..+..++|||+|||+++++++|+++|++||.|..|.++.+ |||||+|.+.++|.+||+.||+..|.|++++
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 3467899999999999999999999999999999999765 6999999999999999999999999999833
No 330
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=3.5e-15 Score=114.66 Aligned_cols=82 Identities=16% Similarity=0.273 Sum_probs=72.9
Q ss_pred ccCCcceEEecCCC-----CCCHHHHHhcccCCCCeeEEEEeeCC--CCCCcceEEEEeCCHHHHHHHHHHhCCceecCc
Q 010577 302 KFQGANLYIKNLDD-----SIDDEKLKQLFSPFGSITSCKVMRDP--SGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374 (507)
Q Consensus 302 ~~~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~--~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~ 374 (507)
..++++|+|.|+-. +.++++|+++|++||.|.+|++..++ +++++|||||+|.+.++|.+|++.|||+.+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34677899999963 24789999999999999999999885 368899999999999999999999999999999
Q ss_pred ceeeehhhc
Q 010577 375 PLYVALAQR 383 (507)
Q Consensus 375 ~i~v~~~~~ 383 (507)
.|.|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999975
No 331
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=8.6e-16 Score=118.19 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=72.7
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCC----HHH----HHHHHH--HcCCCC
Q 010577 24 TSLYVGDL----EANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN----AQE----AARALE--MLNFTP 89 (507)
Q Consensus 24 ~~l~V~nL----p~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~----~~~----A~~A~~--~l~~~~ 89 (507)
+.|||+|| |+.+++.+|+++|+.||.|.++.++.|+.||.++|||||+|.+ .++ |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 899988 689999
Q ss_pred CCCcceEeecccCC
Q 010577 90 LNGKPIRVMYSHRD 103 (507)
Q Consensus 90 ~~g~~~~v~~~~~~ 103 (507)
|.|++++|.+.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999877655
No 332
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=9.1e-16 Score=120.28 Aligned_cols=73 Identities=26% Similarity=0.598 Sum_probs=68.8
Q ss_pred CCcceEEecCCCC-CCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDS-IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++|||+|||++ +|+++|+++|+.||.|.+|++ ++|||||+|.+.++|.+|++.|||..++|+.|+|.+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3468999999999 999999999999999999999 47899999999999999999999999999999999996
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
.
T Consensus 99 ~ 99 (110)
T 1wf1_A 99 E 99 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 333
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=114.99 Aligned_cols=74 Identities=32% Similarity=0.511 Sum_probs=68.4
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
...++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35678999996 89999999999999999999994 368999999999999999999999999999999999997
Q ss_pred c
Q 010577 383 R 383 (507)
Q Consensus 383 ~ 383 (507)
+
T Consensus 86 ~ 86 (97)
T 1x5p_A 86 K 86 (97)
T ss_dssp S
T ss_pred C
Confidence 5
No 334
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=5e-15 Score=116.89 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=71.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHcCCCCCCC--cce
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAARALEMLNFTPLNG--KPI 95 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~~ 95 (507)
.+..-.+|||+||++.+++++|+++|++||.|.+|.+..+. +|+ |||+|.+.++|.+|++.||+..|.| ++|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 33445567799999999999999999999999999987642 467 9999999999999999999999988 899
Q ss_pred EeecccCCcc
Q 010577 96 RVMYSHRDPS 105 (507)
Q Consensus 96 ~v~~~~~~~~ 105 (507)
+|.+++....
T Consensus 99 rI~~ak~~~l 108 (130)
T 3zzy_A 99 RIDFSKLTSL 108 (130)
T ss_dssp EEEECSCSSC
T ss_pred EEEecCCCce
Confidence 9999987643
No 335
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.60 E-value=3.5e-16 Score=129.04 Aligned_cols=84 Identities=25% Similarity=0.470 Sum_probs=73.2
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEE------EEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcc
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSC------KVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKP 375 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~------~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~ 375 (507)
..+.++|||+|||+++|+++|+++|+.||.|.+| .+....+|+++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3456789999999999999999999999998874 2222346889999999999999999999999999999999
Q ss_pred eeeehhhchH
Q 010577 376 LYVALAQRKE 385 (507)
Q Consensus 376 i~v~~~~~~~ 385 (507)
|.|.|+++..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997543
No 336
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.5e-15 Score=115.31 Aligned_cols=75 Identities=32% Similarity=0.485 Sum_probs=69.3
Q ss_pred cCCcceEEecCCCCCCHHHHHhcccCC--CCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 303 FQGANLYIKNLDDSIDDEKLKQLFSPF--GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
...++|||+|||+++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 356789999999999999999999999 999999874 56999999999999999999999999999999999
Q ss_pred hhch
Q 010577 381 AQRK 384 (507)
Q Consensus 381 ~~~~ 384 (507)
++++
T Consensus 86 a~~~ 89 (99)
T 2cpd_A 86 AKPV 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9753
No 337
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.59 E-value=6.9e-16 Score=119.26 Aligned_cols=83 Identities=23% Similarity=0.497 Sum_probs=76.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
.....+++|||+|||.++++++|+++|+.||.|.+|.+..+. ++.++|||||+|.+.++|.+|++ ++..+.|+.+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 345577999999999999999999999999999999999997 89999999999999999999999 888899999999
Q ss_pred ecccCC
Q 010577 98 MYSHRD 103 (507)
Q Consensus 98 ~~~~~~ 103 (507)
.++...
T Consensus 81 ~~a~~~ 86 (102)
T 2xs2_A 81 GPAIRK 86 (102)
T ss_dssp EEEEEC
T ss_pred EECCcC
Confidence 877644
No 338
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=1.9e-15 Score=119.11 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=63.8
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeeh
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVAL 380 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~ 380 (507)
.++|||+|||+++|+++|+++|+.||.|.+|.+..+ |||||+|++.++|.+|++.|||..|+|+.|+|.+
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 468999999999999999999999999999999776 7999999999999999999999999999944333
No 339
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.3e-15 Score=113.36 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=66.2
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+|||+++|+++|+++|+.||.|.+| +....+|+ ||||+|.+.++|.+|++ |||..++|+.|+|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 34689999999999999999999999999998 33333444 99999999999999999 999999999999998754
No 340
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=1.5e-14 Score=113.89 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=66.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHcCCCCCCC--cceEeecc
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGY-GYVNFSNAQEAARALEMLNFTPLNG--KPIRVMYS 100 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~~~v~~~ 100 (507)
..|||+||++.+++++|+++|++||.|++|.++.. .|+ |||+|.+.++|.+|++.||+..|.| ++|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 44679999999999999999999999999999752 176 9999999999999999999999987 58999998
Q ss_pred cCCc
Q 010577 101 HRDP 104 (507)
Q Consensus 101 ~~~~ 104 (507)
+...
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7653
No 341
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=117.31 Aligned_cols=78 Identities=17% Similarity=0.326 Sum_probs=66.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLST---RRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
....+++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+. ++|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEE
Confidence 345679999999999999999999999999998 888777666 78999999999999999999999843 566666
Q ss_pred Eeec
Q 010577 96 RVMY 99 (507)
Q Consensus 96 ~v~~ 99 (507)
.+..
T Consensus 81 ~~~~ 84 (114)
T 2dnl_A 81 LCVS 84 (114)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 5543
No 342
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.5e-15 Score=114.37 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=68.1
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC-----C
Q 010577 19 NQFGTTSLYV--GDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL-----N 91 (507)
Q Consensus 19 ~~~~~~~l~V--~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~-----~ 91 (507)
...++++||| +||++++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|++.||+..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456789999 779999999999999999999999987532 57999999999999999999999877 6
Q ss_pred CcceEeecccCC
Q 010577 92 GKPIRVMYSHRD 103 (507)
Q Consensus 92 g~~~~v~~~~~~ 103 (507)
|+++.|.++..-
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 778888776543
No 343
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=114.16 Aligned_cols=78 Identities=27% Similarity=0.373 Sum_probs=70.2
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEE-EeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCK-VMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~-~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++|||+|||+++|+++|+++|+.||.|.+|+ +..+.. .|.|||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 457899999999999999999999999999995 777643 2349999999999999999999999999999999997
Q ss_pred ch
Q 010577 383 RK 384 (507)
Q Consensus 383 ~~ 384 (507)
++
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 344
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=5.8e-15 Score=110.42 Aligned_cols=74 Identities=22% Similarity=0.509 Sum_probs=67.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcC----C-------CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQM----G-------QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~----G-------~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 87 (507)
+.+.+++|||+|||+++++++|+++|+.| | .|.++.+.++ +|||||+|.+.++|.+|+ .||+
T Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 2 PLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp CSGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCC
Confidence 45678999999999999999999999999 8 8999988654 579999999999999999 8999
Q ss_pred CCCCCcceEeec
Q 010577 88 TPLNGKPIRVMY 99 (507)
Q Consensus 88 ~~~~g~~~~v~~ 99 (507)
..+.|+.|+|+.
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999864
No 345
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=1.3e-14 Score=111.50 Aligned_cols=83 Identities=11% Similarity=0.142 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCC-----CCCHHHHHHHHhcCCCEEEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHcCCCCCCCc
Q 010577 20 QFGTTSLYVGDLEA-----NVTDSQLYDLFNQMGQVVSVRVCRDLST-RRSLGYGYVNFSNAQEAARALEMLNFTPLNGK 93 (507)
Q Consensus 20 ~~~~~~l~V~nLp~-----~~~~~~l~~~f~~~G~v~~i~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 93 (507)
..++++|+|+||.. +.++++|++.|++||.|.+|.|.++..+ ++++|+|||+|.+.++|.+|++.||+..|.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 45789999999963 2478999999999999999999988644 68899999999999999999999999999999
Q ss_pred ceEeecccC
Q 010577 94 PIRVMYSHR 102 (507)
Q Consensus 94 ~~~v~~~~~ 102 (507)
.|+|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998764
No 346
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=8.1e-15 Score=116.25 Aligned_cols=76 Identities=32% Similarity=0.502 Sum_probs=69.6
Q ss_pred ccCCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehh
Q 010577 302 KFQGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALA 381 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~ 381 (507)
....++|||+|+ ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 345778999996 69999999999999999999996 36899999999999999999999999999999999999
Q ss_pred hch
Q 010577 382 QRK 384 (507)
Q Consensus 382 ~~~ 384 (507)
.+.
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 347
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.55 E-value=1.7e-15 Score=147.59 Aligned_cols=152 Identities=16% Similarity=0.325 Sum_probs=105.8
Q ss_pred HHHHHHhcCCCEEEEEEEecCC--CCCcccEE-----EEEeCCHHHHHHHHHHcCCCCCCC---------------cceE
Q 010577 39 QLYDLFNQMGQVVSVRVCRDLS--TRRSLGYG-----YVNFSNAQEAARALEMLNFTPLNG---------------KPIR 96 (507)
Q Consensus 39 ~l~~~f~~~G~v~~i~~~~~~~--~~~~~g~a-----fV~f~~~~~A~~A~~~l~~~~~~g---------------~~~~ 96 (507)
.|..+|..+++|..|..+.... .....+++ |+.|.+..++..++...+...... ..+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3789999999988874332110 11222333 777776554443332211111000 0111
Q ss_pred eecccCCcccccCCCCcEEEcCCCcccChHHHHhhhhccCceeEEEEeeC-CCCCceeEEEEEECCHHHHHHHHHHhcCC
Q 010577 97 VMYSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATD-LNGQSKGYGFVQFDNEESAQKAIEKLNGM 175 (507)
Q Consensus 97 v~~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~~~~~g~a~v~f~~~e~A~~A~~~l~~~ 175 (507)
+..............++|||+||+..+|+++|.++|+.||.|..|.|+.+ .++.++|||||+|.+.++|..|++.|++.
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 11112222233345679999999999999999999999999999999988 46889999999999999999999999999
Q ss_pred ccCCceeEEeeeccc
Q 010577 176 LLNDKQVYVGHFLRK 190 (507)
Q Consensus 176 ~~~~~~i~v~~~~~~ 190 (507)
.|.|+.|.|.++...
T Consensus 168 ~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 168 KIDGRRVLVDVERGR 182 (437)
T ss_pred EECCEEEEEEEeCCC
Confidence 999999999987654
No 348
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=1.7e-15 Score=124.99 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=73.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEE--------EEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCC
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSV--------RVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i--------~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 89 (507)
.....+++|||+|||+++++++|+++|+.||.|..+ .+. .+++++|||||+|.+.++|.+|+..||+..
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 346678999999999999999999999999988764 332 368899999999999999999999999999
Q ss_pred CCCcceEeecccCC
Q 010577 90 LNGKPIRVMYSHRD 103 (507)
Q Consensus 90 ~~g~~~~v~~~~~~ 103 (507)
|.|+.|+|.++...
T Consensus 117 ~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 117 LFGKPMVVQFARSA 130 (143)
T ss_dssp ETTEECEEEECCCS
T ss_pred eCCcEEEEEECCCC
Confidence 99999999998754
No 349
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=1e-14 Score=109.07 Aligned_cols=71 Identities=20% Similarity=0.468 Sum_probs=65.8
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCC----C-------CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPF----G-------SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~ 372 (507)
..++|||+|||+++|+++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 34689999999999999999999999 8 8999998765 789999999999999999 99999999
Q ss_pred Ccceeeeh
Q 010577 373 SKPLYVAL 380 (507)
Q Consensus 373 g~~i~v~~ 380 (507)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999863
No 350
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=1.6e-14 Score=124.81 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=73.1
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
.++|||+|||+++|+++|+++|+.||.|.+|++.++.+|.++|||||+|++.++|.+|++.++ ..++|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 357999999999999999999999999999999999899999999999999999999997665 5999999999998754
Q ss_pred H
Q 010577 385 E 385 (507)
Q Consensus 385 ~ 385 (507)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.8e-15 Score=110.54 Aligned_cols=75 Identities=15% Similarity=0.329 Sum_probs=64.0
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..++|||+|||+++|+++|+++|+.||.|.+|++..+ ++|||||+|.+.++|.+|+. ....+.|+.|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 4578999999999999999999999999999999876 78999999999999975432 13455899999999875
Q ss_pred h
Q 010577 384 K 384 (507)
Q Consensus 384 ~ 384 (507)
+
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 352
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=114.05 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=64.9
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-C---CCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-S---GISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~---g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
..++|||+|||+++|+++|+++|+.||.|. +.++.+. + |+++|||||+|++.++|.+|++.++ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 8777765 3 7899999999999999999999984 3667766665
Q ss_pred hh
Q 010577 380 LA 381 (507)
Q Consensus 380 ~~ 381 (507)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=3.6e-14 Score=112.48 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=71.0
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 16 ANANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 16 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
.......+++|||+|| ++++++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|++.||+..+.|++|
T Consensus 32 ~~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 32 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp ---CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3344567899999996 69999999999999999999985 456799999999999999999999999999999
Q ss_pred EeecccCCc
Q 010577 96 RVMYSHRDP 104 (507)
Q Consensus 96 ~v~~~~~~~ 104 (507)
+|.++....
T Consensus 104 ~V~~a~~~~ 112 (121)
T 2bz2_A 104 KVNIARKQP 112 (121)
T ss_dssp EEEECCSSC
T ss_pred EEEEeCCCC
Confidence 999988664
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=1.1e-14 Score=128.16 Aligned_cols=81 Identities=22% Similarity=0.396 Sum_probs=70.5
Q ss_pred cCCcceEEecCCCCC---------CHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee--
Q 010577 303 FQGANLYIKNLDDSI---------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV-- 371 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~-- 371 (507)
...++|||+||+..+ ++++|+++|+.||.|++|+++.+ +|||||+|.+.++|+.|++.|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 356789999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred ----------cCcceeeehhhchHHHH
Q 010577 372 ----------VSKPLYVALAQRKEDRR 388 (507)
Q Consensus 372 ----------~g~~i~v~~~~~~~~~~ 388 (507)
.|+.|.|+||+......
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC------
T ss_pred cccccccccCCCCEEEEEEccCCCCHH
Confidence 89999999998655433
No 355
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=2.4e-14 Score=106.87 Aligned_cols=77 Identities=19% Similarity=0.372 Sum_probs=61.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCC--CCCcce
Q 010577 18 ANQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP--LNGKPI 95 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~--~~g~~~ 95 (507)
.......+|||+|||+++++++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.+ +++.. +.|+++
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 35677899999999999999999999999999999999763 67899999999999984 34433 568899
Q ss_pred EeecccCC
Q 010577 96 RVMYSHRD 103 (507)
Q Consensus 96 ~v~~~~~~ 103 (507)
.|.++...
T Consensus 77 ~v~~a~~k 84 (89)
T 3d2w_A 77 HISNAEPK 84 (89)
T ss_dssp EEEECC--
T ss_pred EEEEcCCC
Confidence 99887644
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-13 Score=108.52 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=74.3
Q ss_pred CCCCCCCCCCceEEEcCCCCCCC-----------HHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 010577 14 GGANANQFGTTSLYVGDLEANVT-----------DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARAL 82 (507)
Q Consensus 14 ~~~~~~~~~~~~l~V~nLp~~~~-----------~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 82 (507)
+........+++|+|+||..... +++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|+
T Consensus 6 ~~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 6 SGGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp CSCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHH
T ss_pred cCCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHH
Confidence 34455778899999999944332 5799999999999999966 442 37899999999999999999
Q ss_pred HHcCCCCCCCcceEeecccCCccc
Q 010577 83 EMLNFTPLNGKPIRVMYSHRDPSL 106 (507)
Q Consensus 83 ~~l~~~~~~g~~~~v~~~~~~~~~ 106 (507)
..||+..|.|++|+|.++......
T Consensus 82 ~~lng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 82 QTLDGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp HHSTTCEETTEECEEEECCSCCCS
T ss_pred HHcCCCEECCcEEEEEEeCCCCCc
Confidence 999999999999999998765443
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.8e-15 Score=109.26 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=66.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
+..+++|||+|||+++++++|+++|+.||.|.+|.+..+ ++|||||+|.+.++|++|+.. ...+.|++|+|.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISN 74 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEe
Confidence 356799999999999999999999999999999999754 678999999999999865432 3445899999998
Q ss_pred ccCCcc
Q 010577 100 SHRDPS 105 (507)
Q Consensus 100 ~~~~~~ 105 (507)
+.....
T Consensus 75 a~~~~~ 80 (88)
T 1wf0_A 75 AEPKHN 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876543
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=2.7e-14 Score=109.83 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=70.9
Q ss_pred cCCcceEEecCC--CCCC--------HHHHHhcccCCCCeeEEEEeeCCC---CCCcceEEEEeCCHHHHHHHHHHhCCc
Q 010577 303 FQGANLYIKNLD--DSID--------DEKLKQLFSPFGSITSCKVMRDPS---GISRGSGFVAFSTPEEASRALLEMNGK 369 (507)
Q Consensus 303 ~~~~~l~v~~l~--~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~---g~~~g~afv~f~~~~~A~~a~~~~~~~ 369 (507)
.++++|.|.|+= .++. +++|++.|++||.|.+|+|.++.. +.++|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 356789999983 3333 369999999999999999998864 367999999999999999999999999
Q ss_pred eecCcceeeehhhch
Q 010577 370 MVVSKPLYVALAQRK 384 (507)
Q Consensus 370 ~~~g~~i~v~~~~~~ 384 (507)
.++||.|+|.|....
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998654
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.48 E-value=7.4e-14 Score=120.64 Aligned_cols=80 Identities=16% Similarity=0.321 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
..++|||+|||.++++++|+++|+.||.|.+|.+.++. ++.++|||||+|.+.++|.+|+..++ ..|.|++|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 46899999999999999999999999999999999985 58899999999999999999998654 58999999998876
Q ss_pred CC
Q 010577 102 RD 103 (507)
Q Consensus 102 ~~ 103 (507)
..
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=9.4e-15 Score=112.25 Aligned_cols=72 Identities=18% Similarity=0.411 Sum_probs=61.7
Q ss_pred EecCCCCCCHHHHH-----------hcc-cCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCccee
Q 010577 310 IKNLDDSIDDEKLK-----------QLF-SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLY 377 (507)
Q Consensus 310 v~~l~~~~~~~~l~-----------~~f-~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~ 377 (507)
+.+|++.+++++|+ +.| ++||.|.+|++.++..++++|||||+|.+.++|.+|++.|||+.++|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 34455555555555 555 999999999999988889999999999999999999999999999999999
Q ss_pred eehh
Q 010577 378 VALA 381 (507)
Q Consensus 378 v~~~ 381 (507)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=9.4e-14 Score=122.23 Aligned_cols=82 Identities=23% Similarity=0.461 Sum_probs=71.2
Q ss_pred CCCCCCceEEEcCCCCCC---------CHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCC
Q 010577 18 ANQFGTTSLYVGDLEANV---------TDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp~~~---------~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 88 (507)
.....+++|||+||+.++ ++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|++|++.|++.
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 346789999999999998 79999999999999999999853 579999999999999999999999
Q ss_pred CC------------CCcceEeecccCCcc
Q 010577 89 PL------------NGKPIRVMYSHRDPS 105 (507)
Q Consensus 89 ~~------------~g~~~~v~~~~~~~~ 105 (507)
.+ .|+.|.|.|++.++.
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 98 899999999987643
No 362
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.5e-13 Score=107.76 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=68.1
Q ss_pred cCCcceEEecCCCCCC-----------HHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 010577 303 FQGANLYIKNLDDSID-----------DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMV 371 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~ 371 (507)
.++++|+|.||-...+ +++|+++|++||.|.+|.| .+.. ++|||||+|.+.++|.+|++.|||..+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~--~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH--PDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC--TTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC--CCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4567899999954332 5899999999999999966 4433 799999999999999999999999999
Q ss_pred cCcceeeehhhch
Q 010577 372 VSKPLYVALAQRK 384 (507)
Q Consensus 372 ~g~~i~v~~~~~~ 384 (507)
+|+.|+|.|+.++
T Consensus 90 ~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 GGRQITAQAWDGT 102 (112)
T ss_dssp TTEECEEEECCSC
T ss_pred CCcEEEEEEeCCC
Confidence 9999999998753
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=1.2e-13 Score=108.22 Aligned_cols=80 Identities=16% Similarity=0.328 Sum_probs=70.5
Q ss_pred CCcceEEecCCC--CC---CHHHHHhcccCCCCeeEEEEeeCCC-----CCCcceEEEEeCCHHHHHHHHHHhCCceecC
Q 010577 304 QGANLYIKNLDD--SI---DDEKLKQLFSPFGSITSCKVMRDPS-----GISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (507)
Q Consensus 304 ~~~~l~v~~l~~--~~---~~~~l~~~f~~~g~v~~~~~~~~~~-----g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g 373 (507)
++++|+|.|+-. ++ .++||++.|++||.|.+|+|.++.. +.++|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 677899999843 22 3689999999999999999998753 4578999999999999999999999999999
Q ss_pred cceeeehhhc
Q 010577 374 KPLYVALAQR 383 (507)
Q Consensus 374 ~~i~v~~~~~ 383 (507)
|.|+|.|...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.44 E-value=2e-13 Score=104.94 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=72.0
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHHhcCCCEEEEEEEecCCC--CCcccEEEEEeCCHHHHHHHHHHcCCC
Q 010577 21 FGTTSLYVGDL--EANVT--------DSQLYDLFNQMGQVVSVRVCRDLST--RRSLGYGYVNFSNAQEAARALEMLNFT 88 (507)
Q Consensus 21 ~~~~~l~V~nL--p~~~~--------~~~l~~~f~~~G~v~~i~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~ 88 (507)
.+++.|.|+|+ |.++. ++||++.|++||.|.+|.|.++..+ ++++|+|||+|.+.++|.+|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46899999999 44443 3689999999999999999988654 367899999999999999999999999
Q ss_pred CCCCcceEeecccCC
Q 010577 89 PLNGKPIRVMYSHRD 103 (507)
Q Consensus 89 ~~~g~~~~v~~~~~~ 103 (507)
.|.||.|++.++..+
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999987643
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.3e-12 Score=96.56 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=68.0
Q ss_pred CCCCCCceEEEcCCC-------CCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC
Q 010577 18 ANQFGTTSLYVGDLE-------ANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL 90 (507)
Q Consensus 18 ~~~~~~~~l~V~nLp-------~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~ 90 (507)
+.....++|.|+-.. .++++++|+++|++||.|.+|.+. ++++|||||+|.+.++|.+|++.+++ +
T Consensus 5 ~~~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~ 77 (100)
T 2d9o_A 5 SSGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L 77 (100)
T ss_dssp CCCCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C
T ss_pred cCCCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C
Confidence 334457789888876 358999999999999999999997 36789999999999999999997544 6
Q ss_pred CCcceEeecccCCcc
Q 010577 91 NGKPIRVMYSHRDPS 105 (507)
Q Consensus 91 ~g~~~~v~~~~~~~~ 105 (507)
.|++|+|.|+.....
T Consensus 78 ~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 78 VDNPLKISWLEGQPQ 92 (100)
T ss_dssp SSSBCEEECSSCCCC
T ss_pred CCCeEEEEEccCCCC
Confidence 899999999876643
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=4.8e-13 Score=104.69 Aligned_cols=82 Identities=16% Similarity=0.233 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCC--CC---CHHHHHHHHhcCCCEEEEEEEecCC----CCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 21 FGTTSLYVGDLEA--NV---TDSQLYDLFNQMGQVVSVRVCRDLS----TRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 21 ~~~~~l~V~nLp~--~~---~~~~l~~~f~~~G~v~~i~~~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
.++++|+|+|+-. ++ -++||++.|++||.|.+|.|.++.. +++++|++||+|.+.++|.+|++.||+..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999942 22 3789999999999999999999864 3567899999999999999999999999999
Q ss_pred CcceEeecccC
Q 010577 92 GKPIRVMYSHR 102 (507)
Q Consensus 92 g~~~~v~~~~~ 102 (507)
||.|++.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999988764
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.36 E-value=2.3e-13 Score=104.50 Aligned_cols=71 Identities=30% Similarity=0.524 Sum_probs=60.3
Q ss_pred cCCCCCCCHHHHHHHH------------hcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceE
Q 010577 29 GDLEANVTDSQLYDLF------------NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIR 96 (507)
Q Consensus 29 ~nLp~~~~~~~l~~~f------------~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~ 96 (507)
.||++.+++++|++.| ++||.|.+|.|.++. +++++|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 3444455666665555 999999999999875 478999999999999999999999999999999999
Q ss_pred eecc
Q 010577 97 VMYS 100 (507)
Q Consensus 97 v~~~ 100 (507)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9876
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=2.8e-12 Score=99.58 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=67.6
Q ss_pred cCCcceEEecCCCCC----------CHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 010577 303 FQGANLYIKNLDDSI----------DDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (507)
Q Consensus 303 ~~~~~l~v~~l~~~~----------~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~ 372 (507)
.++++|.|.|+=... .++||++.|++||.|.+|.+.++. ++|++||+|.+.++|.+|++.|||+.++
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356678999874322 136889999999999999997653 5899999999999999999999999999
Q ss_pred CcceeeehhhchH
Q 010577 373 SKPLYVALAQRKE 385 (507)
Q Consensus 373 g~~i~v~~~~~~~ 385 (507)
||.|+|.|+....
T Consensus 82 GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 82 GKMITAAYVPLPT 94 (114)
T ss_dssp TEECEEEEECHHH
T ss_pred CEEEEEEEEcHHH
Confidence 9999999997543
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.7e-12 Score=97.02 Aligned_cols=63 Identities=21% Similarity=0.355 Sum_probs=56.4
Q ss_pred CCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhc
Q 010577 315 DSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQR 383 (507)
Q Consensus 315 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~ 383 (507)
..+|+++|+++|++||.|.+|++.. +++|||||+|++.++|.+|++.+++ +.|+.|+|+|++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 4689999999999999999999983 5799999999999999999988554 6799999999874
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=3.6e-12 Score=118.54 Aligned_cols=75 Identities=24% Similarity=0.472 Sum_probs=65.4
Q ss_pred cCCcceEEec--CCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceec---Cc--c
Q 010577 303 FQGANLYIKN--LDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV---SK--P 375 (507)
Q Consensus 303 ~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~---g~--~ 375 (507)
.++.+|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|.+|++.|||+.+. |+ .
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 4567899999 578999999999999999999998754 4789999999999999999999999883 44 5
Q ss_pred eeeehhh
Q 010577 376 LYVALAQ 382 (507)
Q Consensus 376 i~v~~~~ 382 (507)
|.|.|+.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7778774
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.28 E-value=1e-11 Score=96.44 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=67.4
Q ss_pred CCCCCceEEEcCCCCCCC----------HHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCC
Q 010577 19 NQFGTTSLYVGDLEANVT----------DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFT 88 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~----------~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 88 (507)
+..+++.|.|+|+=..-. ++||++.|++||.|.+|.|.++. .+|++||+|.+.++|.+|++.||+.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 456789999999943222 34789999999999999996652 4789999999999999999999999
Q ss_pred CCCCcceEeeccc
Q 010577 89 PLNGKPIRVMYSH 101 (507)
Q Consensus 89 ~~~g~~~~v~~~~ 101 (507)
.|.||.|+|.++.
T Consensus 79 ~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 79 WFAGKMITAAYVP 91 (114)
T ss_dssp EETTEECEEEEEC
T ss_pred EECCEEEEEEEEc
Confidence 9999999998875
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.22 E-value=1.5e-11 Score=114.33 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=64.4
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCC---CCc
Q 010577 19 NQFGTTSLYVGD--LEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPL---NGK 93 (507)
Q Consensus 19 ~~~~~~~l~V~n--Lp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~---~g~ 93 (507)
.+.++++|||+| |+..++|++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.||+..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 467889999999 588999999999999999999987743 457999999999999999999999766 345
Q ss_pred --ceEeecc
Q 010577 94 --PIRVMYS 100 (507)
Q Consensus 94 --~~~v~~~ 100 (507)
.+.+.+.
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 4555554
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=9.7e-11 Score=90.63 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=73.0
Q ss_pred ccCCcceEEecCCCC-CCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCC-HHHHHHHHHHhC--CceecCccee
Q 010577 302 KFQGANLYIKNLDDS-IDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFST-PEEASRALLEMN--GKMVVSKPLY 377 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~-~~~A~~a~~~~~--~~~~~g~~i~ 377 (507)
...++.|+|+||+++ ++.++|+++|+.||.|.+|++.++.. .|||+|.+ .++|..|++.+| +..|.|..++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 346788999999999 99999999999999999999988854 69999999 899999999995 7788999999
Q ss_pred eehhhchHHHHH
Q 010577 378 VALAQRKEDRRA 389 (507)
Q Consensus 378 v~~~~~~~~~~~ 389 (507)
++.....+.+.-
T Consensus 90 ~evL~GeeE~~y 101 (121)
T 1owx_A 90 WEVLEGEVEKEA 101 (121)
T ss_dssp EEECCHHHHHHH
T ss_pred EEECCCHHHHHH
Confidence 998876666553
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=6.3e-11 Score=85.28 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=62.5
Q ss_pred cCCcceEEecCC----CCCCH----HHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCc
Q 010577 303 FQGANLYIKNLD----DSIDD----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSK 374 (507)
Q Consensus 303 ~~~~~l~v~~l~----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~ 374 (507)
++..||+|.-.+ .+..+ .+|.+.|+.||.|..+++..+ .+||+|.+.++|.+|++ |||..+.||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 455678888776 23333 678999999999999999987 49999999999999997 999999999
Q ss_pred ceeeehhhc
Q 010577 375 PLYVALAQR 383 (507)
Q Consensus 375 ~i~v~~~~~ 383 (507)
.|+|+++++
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999874
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=4.4e-10 Score=86.96 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=68.0
Q ss_pred CCCCCCCceEEEcCCCCC-CCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCC-HHHHHHHHHHcC--CCCCCC
Q 010577 17 NANQFGTTSLYVGDLEAN-VTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSN-AQEAARALEMLN--FTPLNG 92 (507)
Q Consensus 17 ~~~~~~~~~l~V~nLp~~-~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~--~~~~~g 92 (507)
+..-...+.|+|+||+++ +++++|+++|+.||.|..|.+.++.. .|||.|.+ .++|.+|+..|+ +..|.|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 345677899999999999 99999999999999999999988754 69999999 899999999995 677888
Q ss_pred cceEeecc
Q 010577 93 KPIRVMYS 100 (507)
Q Consensus 93 ~~~~v~~~ 100 (507)
..++++..
T Consensus 86 ~~~~~evL 93 (121)
T 1owx_A 86 KEVTWEVL 93 (121)
T ss_dssp SSEEEEEC
T ss_pred cEEEEEEC
Confidence 88777543
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.2e-09 Score=78.65 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=63.8
Q ss_pred CCCCceEEEcCCCC----CC-C---HHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 20 QFGTTSLYVGDLEA----NV-T---DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 20 ~~~~~~l~V~nLp~----~~-~---~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
..+..||+|+.++. +. + ..+|.+.|+.||.|..+++..+. +||+|.+.++|.+|++ ||+..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 35678899998873 22 3 25799999999999999998863 8999999999999999 9999999
Q ss_pred CcceEeecccCC
Q 010577 92 GKPIRVMYSHRD 103 (507)
Q Consensus 92 g~~~~v~~~~~~ 103 (507)
||.|+|.+...+
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999887654
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=5.2e-10 Score=80.84 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=63.4
Q ss_pred ccCCcceEEecCCCC-----CCH----HHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 010577 302 KFQGANLYIKNLDDS-----IDD----EKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVV 372 (507)
Q Consensus 302 ~~~~~~l~v~~l~~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~ 372 (507)
.++..||+|.-++.. +.+ .+|.+.|+.||.|..+++..+ -+||+|.+.++|.+|++ |||..++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeC
Confidence 456678999988632 323 578899999999999999988 39999999999999997 9999999
Q ss_pred Ccceeeehhhc
Q 010577 373 SKPLYVALAQR 383 (507)
Q Consensus 373 g~~i~v~~~~~ 383 (507)
||.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998754
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.85 E-value=3.4e-09 Score=94.14 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=61.2
Q ss_pred CCHHHHHhcccCCCCeeEEEEeeCC-----CCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhhch
Q 010577 317 IDDEKLKQLFSPFGSITSCKVMRDP-----SGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQRK 384 (507)
Q Consensus 317 ~~~~~l~~~f~~~g~v~~~~~~~~~-----~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~~~ 384 (507)
-.+++|++.|++||.|.++.+.++. ++.++|++||+|.+.++|.+|++.|||+.++||.|.+.|....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 3568999999999999999998664 3488999999999999999999999999999999999998643
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=7.1e-09 Score=74.91 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=62.4
Q ss_pred CCCCCceEEEcCCCCC------CC---HHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCC
Q 010577 19 NQFGTTSLYVGDLEAN------VT---DSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTP 89 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~------~~---~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~ 89 (507)
--.+..||+|..++.. .+ ..+|.+.|+.||.|..+++..+. +||+|.+.++|.+|++ ||+..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 4467889999999743 23 24699999999999999998873 8999999999999999 99999
Q ss_pred CCCcceEeecc
Q 010577 90 LNGKPIRVMYS 100 (507)
Q Consensus 90 ~~g~~~~v~~~ 100 (507)
+.||.++|.+-
T Consensus 82 v~Gr~L~V~~k 92 (95)
T 1ufw_A 82 VKGRAVKISGP 92 (95)
T ss_dssp ETTEEEEEECC
T ss_pred eCCeEEEEecc
Confidence 99999999753
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=3.2e-08 Score=72.69 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCC-----CCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceee
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPF-----GSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v 378 (507)
..++|-|-+||+.+++..|+.+++++ |.+..+.+..|.. =|+|+|+|...|.+|...|+|..|.|+.|+|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-----EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-----ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 35689999999999999999999999 9999999999854 4999999999999999999999999999999
Q ss_pred ehhhc
Q 010577 379 ALAQR 383 (507)
Q Consensus 379 ~~~~~ 383 (507)
.-...
T Consensus 95 gTv~e 99 (117)
T 2l9w_A 95 GTIND 99 (117)
T ss_dssp ECHHH
T ss_pred cCHHH
Confidence 76543
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=4.2e-08 Score=86.99 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=68.2
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHHhcCCCEEEEEEEecCCC----CCcccEEEEEeCCHHHHHHHHHHcCCCCCC
Q 010577 21 FGTTSLYVGDLEA-----NVTDSQLYDLFNQMGQVVSVRVCRDLST----RRSLGYGYVNFSNAQEAARALEMLNFTPLN 91 (507)
Q Consensus 21 ~~~~~l~V~nLp~-----~~~~~~l~~~f~~~G~v~~i~~~~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 91 (507)
..++.+.+.|+-. +-.+++|++.|++||.|.++.|.++..+ ++++|++||+|.+.++|.+|+..||+..|.
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 3445666666632 2346789999999999999999866544 388999999999999999999999999999
Q ss_pred CcceEeecccCC
Q 010577 92 GKPIRVMYSHRD 103 (507)
Q Consensus 92 g~~~~v~~~~~~ 103 (507)
||.|.+.++..+
T Consensus 202 gr~i~~~~~~~~ 213 (222)
T 3dxb_A 202 GRKVVAEVYDQE 213 (222)
T ss_dssp SSBCEEEECCHH
T ss_pred CeEEEEEEcCHH
Confidence 999999987643
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=4e-06 Score=61.38 Aligned_cols=91 Identities=20% Similarity=0.252 Sum_probs=73.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcC-----CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcc
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQM-----GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKP 94 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~-----G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 94 (507)
+....+|.|.|||.+++++.|.-+|..- |+|.+|.... +-|+|.|.+.+.|++.++. ....|.+.+
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 4457899999999999999999999762 5899988754 2699999999999999994 467789999
Q ss_pred eEeecccCCcccccCCCCcEEEcCCCcccCh
Q 010577 95 IRVMYSHRDPSLRKSGAGNIFIKNLDKAIDH 125 (507)
Q Consensus 95 ~~v~~~~~~~~~~~~~~~~v~v~nLp~~~t~ 125 (507)
+.|...... ...++++.+|++.++.
T Consensus 76 LsV~P~~~~------~~~r~ll~gl~~~t~~ 100 (104)
T 2dhx_A 76 LSLRPAPPR------APARLLLQGLPPGTSG 100 (104)
T ss_dssp CEEEECCCC------CCCCCCCCSCCCCCCC
T ss_pred EEEEcCCCC------CcceEeeecCCCCCCC
Confidence 999754332 3458999999988753
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.9e-06 Score=62.43 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=65.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcC-----CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcce
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQM-----GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPI 95 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~-----G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~ 95 (507)
...++|-|-|||..++...|+.++.++ |.+..|.+..|.. =|+|+|.+...|-+|.-.|++..|.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347999999999999999999999999 9999999987743 59999999999999999999999999999
Q ss_pred Eee
Q 010577 96 RVM 98 (507)
Q Consensus 96 ~v~ 98 (507)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 984
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=1.6e-05 Score=58.57 Aligned_cols=73 Identities=21% Similarity=0.291 Sum_probs=63.1
Q ss_pred CcceEEecCCCCC-C----HHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeee
Q 010577 305 GANLYIKNLDDSI-D----DEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVA 379 (507)
Q Consensus 305 ~~~l~v~~l~~~~-~----~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~ 379 (507)
.++|+|.||+.++ + .+.++++|..|+.+.....++.- .=..|.|.+.++|.+|...||+..++|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4679999998766 2 25779999999999988887752 247999999999999999999999999999999
Q ss_pred hhh
Q 010577 380 LAQ 382 (507)
Q Consensus 380 ~~~ 382 (507)
|+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 996
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=1.7e-05 Score=58.45 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=63.3
Q ss_pred CceEEEcCCCCCC-CH----HHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEe
Q 010577 23 TTSLYVGDLEANV-TD----SQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRV 97 (507)
Q Consensus 23 ~~~l~V~nLp~~~-~~----~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v 97 (507)
-++|+|.||+.++ .. +.++++|+.|+++......+.-. -..|.|.+.++|.+|...||+..|.|+++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4679999998765 32 46789999999888888776543 4789999999999999999999999999999
Q ss_pred ecccCC
Q 010577 98 MYSHRD 103 (507)
Q Consensus 98 ~~~~~~ 103 (507)
.++...
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998733
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.76 E-value=9.1e-05 Score=53.75 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=56.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCC--cccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRR--SLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
++|.||+||+.++|+++.+.++.+..+.-...+.++.+.+ ...-|||.|.+.+++....+.+++..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5899999999999999999999998776666665543322 33579999999999999999999877643
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=0.00032 Score=51.35 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=56.3
Q ss_pred CCcceEEecCCCCCCHHHHHhcccC-----CCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceee
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSP-----FGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYV 378 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~-----~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v 378 (507)
...+|.|.|||..++++.|.-+|+. -|.|.++.... +-|+|+|.+.+.|.+.++ -..+.+++..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 4568999999999999999999976 25888888865 269999999999999874 3357888888887
Q ss_pred eh
Q 010577 379 AL 380 (507)
Q Consensus 379 ~~ 380 (507)
.-
T Consensus 79 ~P 80 (104)
T 2dhx_A 79 RP 80 (104)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.47 E-value=0.00068 Score=49.17 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=57.1
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC-C-C-CCcceEEEEeCCHHHHHHHHHHhCCceecC
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP-S-G-ISRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~-g-~~~g~afv~f~~~~~A~~a~~~~~~~~~~g 373 (507)
++|.|++||..+|++++.+.++....+........+ + + ..-.-|+|.|.+.+++..-.+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 469999999999999999999999888877777665 1 1 123459999999999999999999998864
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.23 E-value=0.0012 Score=47.69 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=44.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 010577 24 TSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (507)
Q Consensus 24 ~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 86 (507)
..|++-++|.+....||.++|+.||.| .|+-+.| + .|||.|.+.+.|..|++.+.
T Consensus 16 ~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET--T-----EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 334444999999999999999999965 3444444 3 79999999999999999764
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.03 E-value=0.0016 Score=49.51 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=57.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCC-cceEe
Q 010577 19 NQFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNG-KPIRV 97 (507)
Q Consensus 19 ~~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g-~~~~v 97 (507)
.....+-|.|-+.|.+ ..+.|.+.|++||.|++.... .+ ..+-.|.|.+..+|++|+.+ |+..+.| --|-|
T Consensus 20 ~~~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEE
Confidence 3456889999999877 478899999999999988762 12 23899999999999999995 9888875 34555
Q ss_pred ec
Q 010577 98 MY 99 (507)
Q Consensus 98 ~~ 99 (507)
..
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.92 E-value=0.00084 Score=48.66 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=43.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcC
Q 010577 25 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLN 86 (507)
Q Consensus 25 ~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 86 (507)
.|++-++|.+..-.||.++|+.||.| .|+-+.| + .|||.|.+.+.|..|++.+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEE-EEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 34444999999999999999999843 3444443 3 79999999999999999864
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.92 E-value=0.0022 Score=46.31 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=44.5
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~ 367 (507)
.|++-++|.++.-.||.++|+.||. ..|+++.|. -|||.|.+.+.|..|+..++
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCS-CCCEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 3544499999999999999999984 456666663 59999999999999998763
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.87 E-value=0.00082 Score=48.95 Aligned_cols=72 Identities=11% Similarity=0.077 Sum_probs=50.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHcCCCCCCC
Q 010577 21 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTR--RSLGYGYVNFSNAQEAARALEMLNFTPLNG 92 (507)
Q Consensus 21 ~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 92 (507)
-.+-+|.||.||+..||+++.+.++.+=.+.....+.++.+. ....-|||.|.+.++.....+.+++..|.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 356789999999999999998888765333222222111111 122368999999999999999999876633
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.67 E-value=0.0051 Score=46.75 Aligned_cols=72 Identities=11% Similarity=0.145 Sum_probs=56.9
Q ss_pred CcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecC-cceeeehhhc
Q 010577 305 GANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVS-KPLYVALAQR 383 (507)
Q Consensus 305 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g-~~i~v~~~~~ 383 (507)
.+.|.|-+.+... ...|.+.|+.||.|.+..... ...+..|.|++..+|.+|+ ..||..++| -.|-|.....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECCC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECCC
Confidence 4568899998875 566778999999999888721 2348999999999999999 679999985 5666766543
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.65 E-value=0.0019 Score=46.78 Aligned_cols=53 Identities=28% Similarity=0.387 Sum_probs=44.7
Q ss_pred eEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 010577 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (507)
Q Consensus 308 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~ 367 (507)
|++-++|.++.-.||.++|+.|| -..|+++.|. -|||.|.+.+.|..|+..+.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 44449999999999999999998 4567777663 59999999999999998775
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.56 E-value=0.0066 Score=44.18 Aligned_cols=68 Identities=12% Similarity=0.222 Sum_probs=51.4
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCC--CCC-CcceEEEEeCCHHHHHHHHHHhCCceecC
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDP--SGI-SRGSGFVAFSTPEEASRALLEMNGKMVVS 373 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~g~-~~g~afv~f~~~~~A~~a~~~~~~~~~~g 373 (507)
.+|.|++||..+|++++.+.++..-.+........+ .+. .-.-|+|.|.+.++...-.+.++|..|.+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 469999999999999999999876554433333332 111 12348999999999999999999998864
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.07 E-value=0.0026 Score=61.26 Aligned_cols=57 Identities=9% Similarity=0.227 Sum_probs=43.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEM 84 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 84 (507)
..|+|+|. .|..+++.+|.+.|+.||+|.++.+.+++ | .||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 35899998 79999999999999999999999887653 3 4999999999999987764
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.68 E-value=0.0078 Score=46.36 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=55.0
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEE-EEeeCC----------C---C-CCcceEEEEeCCHHHHHHHHHHhCCcee
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSC-KVMRDP----------S---G-ISRGSGFVAFSTPEEASRALLEMNGKMV 371 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~~----------~---g-~~~g~afv~f~~~~~A~~a~~~~~~~~~ 371 (507)
.|.|-+.|.+.+. .|-+.|++||.|.+- ...+.. . . ....+..|+|++..+|.+|+ ..||..|
T Consensus 9 ~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAVF 86 (132)
T ss_dssp EEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCEE
T ss_pred EEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeEe
Confidence 4778888766554 466889999998762 221100 0 0 02458899999999999999 7899999
Q ss_pred cCcceeeehhhch
Q 010577 372 VSKPLYVALAQRK 384 (507)
Q Consensus 372 ~g~~i~v~~~~~~ 384 (507)
+|..|-|...++.
T Consensus 87 ~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 87 NGVLLGVIPYTKD 99 (132)
T ss_dssp TTEECEEEECCHH
T ss_pred CcEEEEEEECCHH
Confidence 9998888877533
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.07 E-value=0.01 Score=57.13 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=41.0
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHH
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALL 364 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~ 364 (507)
++|+|. .+..+++.+|.++|+.||.|.++.+..+. .-||.|||.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 469998 79999999999999999999999987652 3599999999998887763
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.03 E-value=0.027 Score=43.41 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=53.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcCCCEEE-EEEEec------------CCCC-CcccEEEEEeCCHHHHHHHHHHcCC
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQMGQVVS-VRVCRD------------LSTR-RSLGYGYVNFSNAQEAARALEMLNF 87 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~-i~~~~~------------~~~~-~~~g~afV~f~~~~~A~~A~~~l~~ 87 (507)
....|.|-+.| ......|.+.|++||.|.+ +...++ +... ...++..|.|++..+|.+|+.+ |+
T Consensus 6 ~e~~VtVFGFp-~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 6 GELAILVFGYP-ETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp --CEEEEECCC-GGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred CceEEEEEecC-HHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 45678889996 4556778889999999876 211110 0000 0235889999999999999996 99
Q ss_pred CCCCCcceEeecc
Q 010577 88 TPLNGKPIRVMYS 100 (507)
Q Consensus 88 ~~~~g~~~~v~~~ 100 (507)
..|.|.-|-|...
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9998876666433
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.58 E-value=1.8 Score=42.68 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=44.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 87 (507)
...++|+ +|..+...+|.++|+.||.| +|.-+.+ + .|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t-----~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--S-----EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--C-----eEEEEECCHHHHHHHHHHHHh
Confidence 3467776 99999999999999999964 4443332 2 699999999999999998863
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=74.68 E-value=5.2 Score=39.35 Aligned_cols=53 Identities=28% Similarity=0.403 Sum_probs=42.8
Q ss_pred eEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhC
Q 010577 308 LYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN 367 (507)
Q Consensus 308 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~ 367 (507)
+++-.++..+...+|.++|+.||. .+|+++.+ ..|||.|.+.+.|..++..++
T Consensus 442 vl~v~f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEECCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 444458888899999999999994 45655544 369999999999999998885
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=72.72 E-value=14 Score=25.80 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=53.1
Q ss_pred CCcceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhC---Cc----eecCcce
Q 010577 304 QGANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMN---GK----MVVSKPL 376 (507)
Q Consensus 304 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~---~~----~~~g~~i 376 (507)
..+-|.|-|+|..+-..++.-.....|---.|+.+. |.|.|.|.+.++..-|+..|- +. .+.|..+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqic 83 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQIC 83 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceee
Confidence 355689999999999988877777778767777654 479999999999999998762 22 3456665
Q ss_pred eeehh
Q 010577 377 YVALA 381 (507)
Q Consensus 377 ~v~~~ 381 (507)
.|--.
T Consensus 84 dvist 88 (129)
T 4eyt_A 84 DVIST 88 (129)
T ss_dssp EEECC
T ss_pred eeeec
Confidence 55433
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=68.53 E-value=15 Score=24.97 Aligned_cols=59 Identities=14% Similarity=0.336 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHhcCC-----CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 34 NVTDSQLYDLFNQMG-----QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 34 ~~~~~~l~~~f~~~G-----~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
.+...+|..++..-+ .|-.|.+..+ |+||+-.... |.++++.|+...+.|++++++.+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 366777888776443 5667777543 7899987664 888889899999999999887553
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=68.19 E-value=4.3 Score=27.89 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=39.3
Q ss_pred CCCCHHHHHhcccCCC-----CeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCcceeeehhh
Q 010577 315 DSIDDEKLKQLFSPFG-----SITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVALAQ 382 (507)
Q Consensus 315 ~~~~~~~l~~~f~~~g-----~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~~~~~~~g~~i~v~~~~ 382 (507)
..++..+|..++..-+ .|-.|++..+ |.||+-.. +.|..++..|++..+.|+.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3455566666655433 3556677554 89999988 77888999999999999999987653
No 406
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=63.89 E-value=1.5 Score=42.63 Aligned_cols=8 Identities=0% Similarity=0.024 Sum_probs=3.7
Q ss_pred ChHHHHhh
Q 010577 124 DHKALHDT 131 (507)
Q Consensus 124 t~~~l~~~ 131 (507)
|.++|.+.
T Consensus 128 Twdel~~~ 135 (449)
T 3iot_A 128 TWEEIPAL 135 (449)
T ss_dssp BGGGHHHH
T ss_pred CHHHHHHH
Confidence 44444443
No 407
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=61.31 E-value=1.9 Score=41.92 Aligned_cols=6 Identities=17% Similarity=0.108 Sum_probs=2.2
Q ss_pred HHHHHh
Q 010577 40 LYDLFN 45 (507)
Q Consensus 40 l~~~f~ 45 (507)
+.+++.
T Consensus 20 ~~~~~~ 25 (449)
T 3iot_A 20 LAEVGK 25 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=56.86 E-value=47 Score=23.13 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=47.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcCCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 010577 20 QFGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (507)
Q Consensus 20 ~~~~~~l~V~nLp~~~~~~~l~~~f~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 85 (507)
-..++.|.|-|+|..+-..++.-..+-.|.--.|... . |.|.|.|.+.++-..|+..|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi----d----gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI----D----GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC----S----SCEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee----c----CeeEEEecCChHHHHHHHHH
Confidence 3567889999999999999998888888865555443 2 36999999999999999876
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.22 E-value=38 Score=27.43 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=36.8
Q ss_pred CcceEEecCCC-C--------CCHHHHHhcc--cCCCCeeEEEEeeCCCCCCcceEEEEeCCHH
Q 010577 305 GANLYIKNLDD-S--------IDDEKLKQLF--SPFGSITSCKVMRDPSGISRGSGFVAFSTPE 357 (507)
Q Consensus 305 ~~~l~v~~l~~-~--------~~~~~l~~~f--~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~ 357 (507)
...+.|.|++. . .+..+|++.| +.|..+ +|+.+.+..| ++|+|.|+|.+.-
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~G-h~g~aIv~F~~dw 73 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLG-HSGTAIVEFNKDW 73 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSB-EEEEEEEECCSSH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCC-CceeEEEEecCCh
Confidence 34677888886 2 3347899977 999654 4666666665 6789999999644
No 410
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=34.62 E-value=61 Score=31.49 Aligned_cols=98 Identities=12% Similarity=0.171 Sum_probs=53.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhcC---CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeec
Q 010577 23 TTSLYVGDLEANVTDSQLYDLFNQM---GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMY 99 (507)
Q Consensus 23 ~~~l~V~nLp~~~~~~~l~~~f~~~---G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~ 99 (507)
..+|.|+-||+.++-+.|.+..... +++..|.=++|.++... ---.|+++...+++..++.|-.. ..+...+
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~g-vrivIelk~~~~~e~vl~~L~k~----t~Lq~s~ 349 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTG-LRIAIELKKDVNSESIKNYLYKN----SDLQISY 349 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTB-CCEEEEC------CHHHHHHTTS----STTEEEE
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCCCc-eEEEEEECCCcCHHHHHHHHHHh----cCceeee
Confidence 4689999999999998887765532 45544554555443221 12347777777777777765332 2233333
Q ss_pred ccCCcccccCCCCcEEEcCCCcccChHHHHhhhhc
Q 010577 100 SHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134 (507)
Q Consensus 100 ~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~ 134 (507)
+.+- .+++.+.|...+-.+|.+.|-.
T Consensus 350 ~~Nm---------~al~~g~p~~~~l~~iL~~f~~ 375 (514)
T 2inr_A 350 NFNM---------VAISDGRPKLMGIRQIIDSYLN 375 (514)
T ss_dssp EEEC---------EEEETTEEEECCHHHHHHHHHH
T ss_pred eeeE---------EEeeCCEEEECCHHHHHHHHHH
Confidence 2211 3457777877777777766644
No 411
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=33.43 E-value=1.6e+02 Score=22.57 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=65.1
Q ss_pred ceEEEcCCCCCC-CHHHHHHHHhcCC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEeeccc
Q 010577 24 TSLYVGDLEANV-TDSQLYDLFNQMG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVMYSH 101 (507)
Q Consensus 24 ~~l~V~nLp~~~-~~~~l~~~f~~~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~~~~ 101 (507)
+.|.| .++... ...+|.+.|...| .|..+.+.... ..++..+.+.+.+.|.++++.+ +. .+...
T Consensus 7 ~~i~v-~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~----~~~~~~~~~~d~~~a~~~L~~~-G~-----~v~~~--- 72 (144)
T 2f06_A 7 KQLSI-FLENKSGRLTEVTEVLAKENINLSALCIAENA----DFGILRGIVSDPDKAYKALKDN-HF-----AVNIT--- 72 (144)
T ss_dssp EEEEE-EECSSSSHHHHHHHHHHHTTCCEEEEEEEECS----SCEEEEEEESCHHHHHHHHHHT-TC-----CEEEE---
T ss_pred EEEEE-EecCCCcHHHHHHHHHHHCCCCEEEEEEEecC----CCCEEEEEeCCHHHHHHHHHHc-CC-----eEeee---
Confidence 34444 333332 3567888888877 67777654221 1122223478888888888863 21 11110
Q ss_pred CCcccccCCCCcEEEcCCCcc-cChHHHHhhhhccC-ceeEEEEeeCCCCCceeEEEEEECCHHHHHHHHHHhcCC
Q 010577 102 RDPSLRKSGAGNIFIKNLDKA-IDHKALHDTFSAFG-NILSCKVATDLNGQSKGYGFVQFDNEESAQKAIEKLNGM 175 (507)
Q Consensus 102 ~~~~~~~~~~~~v~v~nLp~~-~t~~~l~~~f~~~G-~v~~v~~~~~~~~~~~g~a~v~f~~~e~A~~A~~~l~~~ 175 (507)
.+..-.++.. =.-..+.+.+...| .|..+.... . ..+....+++.+.+.|.++++. .|.
T Consensus 73 -----------svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~--~~~~~~~i~~~d~~~A~~~L~~-~g~ 133 (144)
T 2f06_A 73 -----------DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-N--NNVANVVIRPSNMDKCIEVLKE-KKV 133 (144)
T ss_dssp -----------EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-E--TTEEEEEEEESCHHHHHHHHHH-TTC
T ss_pred -----------eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-c--CCcEEEEEEeCCHHHHHHHHHH-cCC
Confidence 1111122211 12344556665555 554544432 1 2355677899999999998875 444
No 412
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=30.98 E-value=76 Score=20.78 Aligned_cols=55 Identities=11% Similarity=-0.040 Sum_probs=41.9
Q ss_pred cceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 010577 306 ANLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (507)
Q Consensus 306 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~ 366 (507)
.++.|.++.-.-....|+..+.. ..|..+.+... .+.+.|+|.+.++...+++.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHHc
Confidence 35889999988889999999998 88888887443 446888888666666666543
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.37 E-value=1e+02 Score=24.91 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=37.0
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--hcCCCEEEEEEEecCCCCCcccEEEEEeCCH-HHHHHHHH
Q 010577 25 SLYVGDLEA-N--------VTDSQLYDLF--NQMGQVVSVRVCRDLSTRRSLGYGYVNFSNA-QEAARALE 83 (507)
Q Consensus 25 ~l~V~nLp~-~--------~~~~~l~~~f--~~~G~v~~i~~~~~~~~~~~~g~afV~f~~~-~~A~~A~~ 83 (507)
+++|-|+|. . -+..+|++.| +.|.++. |+.+.+. ....|+|.|.|.+- ..-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 467888887 2 3356899977 9998864 5555543 34668999999765 33333433
No 414
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=32.80 E-value=14 Score=27.43 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=33.3
Q ss_pred CCHHHHHhcccCCCCeeEEEEeeCC-CCCCcceE--EEEeCCHHHHHHHHHHhCCcee
Q 010577 317 IDDEKLKQLFSPFGSITSCKVMRDP-SGISRGSG--FVAFSTPEEASRALLEMNGKMV 371 (507)
Q Consensus 317 ~~~~~l~~~f~~~g~v~~~~~~~~~-~g~~~g~a--fv~f~~~~~A~~a~~~~~~~~~ 371 (507)
.+++++..+..+++ +..+.+.+.. .|+. .|. +=.|.|.++|.+|++.|-...-
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 44566777777775 4455555543 3332 233 2349999999999998865433
No 415
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=26.55 E-value=1.7e+02 Score=20.64 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=31.3
Q ss_pred CHHHHHHHHhc----CC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCC
Q 010577 36 TDSQLYDLFNQ----MG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNF 87 (507)
Q Consensus 36 ~~~~l~~~f~~----~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 87 (507)
-|..+++.+.. .| .|.+|.+.. .-.||.||++...++...+++...+
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 35555554432 23 466776643 2568999999999988888876443
No 416
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=22.41 E-value=66 Score=30.86 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=56.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcC---CCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQM---GQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~~---G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
...+|.|+-||+.++-+.|.+.+... +.+..|.=++|..+.+..---.|+++....+...++.|-.. ..+...
T Consensus 235 ~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~~gvrivI~lk~~~~~~~~l~~L~k~----t~Lq~s 310 (470)
T 3ilw_A 235 GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKH----TQLQTS 310 (470)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHHHHHHH----STTEEE
T ss_pred CCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCCCceEEEEEECCCCCHHHHHHHHHHh----ccchhe
Confidence 45679999999999998877766432 45444555555412222112357777766666666654221 122222
Q ss_pred cccCCcccccCCCCcEEEcCCCcccChHHHHhhhhc
Q 010577 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134 (507)
Q Consensus 99 ~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~ 134 (507)
++.+. .+++.+.|...+..+|.+.|-.
T Consensus 311 ~~~Nm---------~al~~g~p~~~~l~eiL~~f~~ 337 (470)
T 3ilw_A 311 FGANM---------LAIVDGVPRTLRLDQLIRYYVD 337 (470)
T ss_dssp EEEEC---------EEEETTEEEECCHHHHHHHHHH
T ss_pred eceee---------eEEECCeeeecCHHHHHHHHHH
Confidence 22211 3445666766676666665544
No 417
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.12 E-value=45 Score=33.99 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHhcc----cCCCCeeEEEEeeCCCCCCcceEEEEeCCHHHHHHHHHHh
Q 010577 313 LDDSIDDEKLKQLF----SPFGSITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEM 366 (507)
Q Consensus 313 l~~~~~~~~l~~~f----~~~g~v~~~~~~~~~~g~~~g~afv~f~~~~~A~~a~~~~ 366 (507)
.+.+.+--||..+| ..+|.|+++.+.-.+.-..+.++++.|.+.++|.+++..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 34445555778877 3788999987755443335567899999999999988765
No 418
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.79 E-value=41 Score=24.27 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=21.4
Q ss_pred CCCCCceE-EEcCCCCCCCHHHHHHHHhcC
Q 010577 19 NQFGTTSL-YVGDLEANVTDSQLYDLFNQM 47 (507)
Q Consensus 19 ~~~~~~~l-~V~nLp~~~~~~~l~~~f~~~ 47 (507)
........ -|-+|+..++.++|+..|.+.
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l 41 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQ 41 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHH
Confidence 33334444 488999999999999998764
No 419
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.34 E-value=2.2e+02 Score=19.96 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=40.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-CC-CEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHc
Q 010577 26 LYVGDLEANVTDSQLYDLFNQ-MG-QVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEML 85 (507)
Q Consensus 26 l~V~nLp~~~~~~~l~~~f~~-~G-~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 85 (507)
-|+-.+...++..+|++.+++ |+ .|..|....-.... .=|||.+....+|...-+.+
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~---KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE---KKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC---EEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc---eEEEEEcCCCCcHHHHHHhh
Confidence 344455678999999998865 56 78888776643221 25999999888887765543
No 420
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=21.18 E-value=1.7e+02 Score=18.78 Aligned_cols=55 Identities=7% Similarity=0.105 Sum_probs=41.3
Q ss_pred ceEEecCCCCCCHHHHHhcccCCCCeeEEEEeeCCCCCCcceEEEEeC----CHHHHHHHHHHh
Q 010577 307 NLYIKNLDDSIDDEKLKQLFSPFGSITSCKVMRDPSGISRGSGFVAFS----TPEEASRALLEM 366 (507)
Q Consensus 307 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~g~~~g~afv~f~----~~~~A~~a~~~~ 366 (507)
++.|.++.-.-....|...+.....|.++.+... .+-+.|+|+ +.++..++++.+
T Consensus 5 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 5 QVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 5788888887788899999998888888887554 346889885 456666666543
No 421
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=20.69 E-value=89 Score=30.09 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=56.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhc---CCCEEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHcCCCCCCCcceEee
Q 010577 22 GTTSLYVGDLEANVTDSQLYDLFNQ---MGQVVSVRVCRDLSTRRSLGYGYVNFSNAQEAARALEMLNFTPLNGKPIRVM 98 (507)
Q Consensus 22 ~~~~l~V~nLp~~~~~~~l~~~f~~---~G~v~~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~~~v~ 98 (507)
...+|.|+-||+.++-+.|.+.+.. -+.+..|.=++|.++...- --.|+.+....+...++.|-.. ..+...
T Consensus 225 ~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gv-rivIelk~~~~~~~~l~~L~k~----T~Lq~s 299 (500)
T 3lpx_A 225 GKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGM-RMVIEIKRGEVGEVVLNNLYKL----TQMQVS 299 (500)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCC-CEEEEECTTSCHHHHHHHHHHH----STTEEE
T ss_pred CCceEEEEecCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCce-EEEEEECCCCCHHHHHHHHHHh----cCCcee
Confidence 4568999999999998887776543 2455555555665443222 2357777766666666654221 122222
Q ss_pred cccCCcccccCCCCcEEEcCCCcccChHHHHhhhhc
Q 010577 99 YSHRDPSLRKSGAGNIFIKNLDKAIDHKALHDTFSA 134 (507)
Q Consensus 99 ~~~~~~~~~~~~~~~v~v~nLp~~~t~~~l~~~f~~ 134 (507)
++.+- .+++.+-|...+-.+|.+.|-.
T Consensus 300 f~~Nm---------~al~~g~pk~~~l~eiL~~f~~ 326 (500)
T 3lpx_A 300 FGLNM---------VALTNGQPKIFNIKEMLEAFVL 326 (500)
T ss_dssp EEEEC---------EEESSSSEEECCHHHHHHHHHH
T ss_pred eeeeE---------EEEECCEeEECCHHHHHHHHHH
Confidence 22111 3445566666666666665544
No 422
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.62 E-value=58 Score=16.37 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.9
Q ss_pred CCHHHHHHHHhcC
Q 010577 35 VTDSQLYDLFNQM 47 (507)
Q Consensus 35 ~~~~~l~~~f~~~ 47 (507)
-+|.+|++++.+|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 3688999999887
Done!