BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010579
(507 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
Length = 430
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 117 SRPKLVAGSPEGYYGHVDGRPRGARMNHPK-GLAV--------DDRGNIYIADTMNMAIR 167
+ P +V G +G VDG + AR + P+ G V D + Y D N IR
Sbjct: 307 TTPYIVCGQ-QGAKDWVDGVGKKARXHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365
Query: 168 KISDTGVTTIAGGKWSRGV-GHVDGP-SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE 225
++ G T G+ S G G+ DG ++A+F++ +VY + DR N+ IR+
Sbjct: 366 ILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRK 425
Query: 226 I 226
I
Sbjct: 426 I 426
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 81 FGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAG-SPEGYYGHVDGRPRG 139
F P S + D EN I L+P R AG G G+ DG R
Sbjct: 339 FVKNPAYKGSSDEYDFYFCDRENHCI----RILTPQGRVTTFAGRGSNGTSGYNDGDLRQ 394
Query: 140 -ARMNHPKGLAVD-DRGNIYIADTMNMAIRKI 169
AR NHP+G+ D +R +I D N IRKI
Sbjct: 395 EARFNHPEGIVYDEERECFFIGDRENRRIRKI 426
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 35/170 (20%)
Query: 63 MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 122
++K G T TV + +P +AV +G + V D N + L
Sbjct: 48 VVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVV-------------TLA 93
Query: 123 AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 182
AGS DG +N+P+GLAVD +G +Y+AD N + K +A G
Sbjct: 94 AGSNNQTVLPFDG------LNYPEGLAVDTQGAVYVADRGNNRVVK--------LAAGSK 139
Query: 183 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 232
++ V G ND D V V +S ++ V D N + +++ ++
Sbjct: 140 TQTVLPFTG-------LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 35/152 (23%)
Query: 76 FEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVD 134
F G F + P VAV +G N+Y S + Y R KL GS +
Sbjct: 17 FTGIDFRLSPSGVAVDSAG----------NVYVTSEGM--YGRVVKLATGSTGTTVLPFN 64
Query: 135 GRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSE 194
G + P+GLAVD G +Y+ D N V T+A G ++ V DG +
Sbjct: 65 G------LYQPQGLAVDGAGTVYVTDFNNR---------VVTLAAGSNNQTVLPFDGLNY 109
Query: 195 DAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
+ D + ++ V DRGN + ++
Sbjct: 110 PEGLAVD-------TQGAVYVADRGNNRVVKL 134
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 20/116 (17%)
Query: 63 MIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 122
++K G +TV + +P VAV SG + V D++N+ + K L S ++V
Sbjct: 131 VVKLAAGSKTQTVLPFTGLN-DPDGVAVDNSGNVYVTDTDNNRVVK----LEAESNNQVV 185
Query: 123 AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD-TMNMAIRKISDTGVTTI 177
+ + P G+AVD+ G +Y+ + N ++ ++ + +T+
Sbjct: 186 LPFTD--------------ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV 227
>pdb|4HW6|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|C Chain C, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
pdb|4HW6|D Chain D, Crystal Structure Of A Hypothetical Protein (Bacova_00264)
From Bacteroides Ovatus Atcc 8483 At 1.70 A Resolution
Length = 433
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 86 FSVAVSPSGEL-LVLDSENSNIYKI--STSLSPYSRPKLVAG---SPEGYYGHVDGRPRG 139
F + P+G+ ++ + IY++ + + P +V G SP G VDG G
Sbjct: 276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP----GWVDGXGTG 331
Query: 140 ARMNHP-KGLAV--------DDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHV 189
AR+ P +G+ V +D + Y D + +R ++ G VTT AG SR G+V
Sbjct: 332 ARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYV 391
Query: 190 DGP-SEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI 226
DG A F++ + Y + D N +R+I
Sbjct: 392 DGELRSQALFNHPTSIAYDXKRKCFYIGDCDNHRVRKI 429
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 292 PPKSARPPLVPTEDDFEKP-EEGFFGSIGRLVLNTGSTVGEIFGGLFSMFRRKPV 345
PP P+ + EKP +EGFF + R +L T +G G S+FR K +
Sbjct: 172 PPAEEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLG---SGFISLFRGKKI 223
>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of
Unknown Function (np_812590.1) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.70 A Resolution
Length = 409
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 6/106 (5%)
Query: 66 FEGGYTVETVFEGSK---FGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV 122
F G T +TV +G + +P V G ++D + L Y V
Sbjct: 303 FCGSATQKTVQDGLREEALFAQPNGXTVDEDGNFYIVDGFKGYCLRKLDILDGYV--STV 360
Query: 123 AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRK 168
AG + +DG P A N+P + D G +IA+ AIRK
Sbjct: 361 AGQVD-VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRK 405
>pdb|3BWS|A Chain A, Crystal Structure Of The Leptospiral Antigen Lp49
pdb|3BWS|B Chain B, Crystal Structure Of The Leptospiral Antigen Lp49
Length = 433
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 108 KISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP------KGLAVDDRGNIYIADT 161
K+ S+ + +P +A SP+G Y +V R NHP KGL + G +Y+ DT
Sbjct: 336 KVQKSIPVFDKPNTIALSPDGKYLYVSCRGP----NHPTEGYLKKGLVL---GKVYVIDT 388
Query: 162 MNMAIRKISDTG 173
+++ + G
Sbjct: 389 TTDTVKEFWEAG 400
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 53/163 (32%), Gaps = 23/163 (14%)
Query: 92 PSGELLVLDSENSNIYKISTSL---SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 148
P+G+ + N YK PY + + AGS E G +G N KG
Sbjct: 77 PNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGE 136
Query: 149 A--------------VDDRGNIYIADTMNMA------IRKISDTGVTTIAGGKWSRGVGH 188
V+ R I M I G + G +W H
Sbjct: 137 KIPRCLPVCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAH 196
Query: 189 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD 231
P E SN V++G + ++ GN IR + +H D
Sbjct: 197 TLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPD 239
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 71 TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV-AGSPEGY 129
T E E SK G++ + G+L +LD NI+KI+ RP + +P
Sbjct: 33 TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAI 92
Query: 130 YGHVDGR 136
H DGR
Sbjct: 93 KIHKDGR 99
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 71 TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV-AGSPEGY 129
T E E SK G++ + G+L +LD NI+KI+ RP + +P
Sbjct: 33 TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAI 92
Query: 130 YGHVDGR 136
H DGR
Sbjct: 93 KIHKDGR 99
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 71 TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLV-AGSPEGY 129
T E E SK G++ + G+L +LD NI+KI+ RP + +P
Sbjct: 33 TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAI 92
Query: 130 YGHVDGR 136
H DGR
Sbjct: 93 KIHKDGR 99
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 53/163 (32%), Gaps = 23/163 (14%)
Query: 92 PSGELLVLDSENSNIYKISTSL---SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 148
P+G+ + N YK PY + + AGS E G +G N KG
Sbjct: 9 PNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGE 68
Query: 149 A--------------VDDRGNIYIADTMNMA------IRKISDTGVTTIAGGKWSRGVGH 188
V+ R I M I G + G +W H
Sbjct: 69 KIPRCLPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAH 128
Query: 189 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD 231
P E SN V++G + ++ GN IR + +H D
Sbjct: 129 TLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPD 171
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 53/163 (32%), Gaps = 23/163 (14%)
Query: 92 PSGELLVLDSENSNIYKISTSL---SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 148
P+G+ + N YK PY + + AGS E G +G N KG
Sbjct: 9 PNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGE 68
Query: 149 A--------------VDDRGNIYIADTMNMA------IRKISDTGVTTIAGGKWSRGVGH 188
V+ R I M I G + G +W H
Sbjct: 69 KIPRCLPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAH 128
Query: 189 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD 231
P E SN V++G + ++ GN IR + +H D
Sbjct: 129 TLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPD 171
>pdb|1Q7F|A Chain A, Brain Tumor Nhl Domain
pdb|1Q7F|B Chain B, Brain Tumor Nhl Domain
Length = 286
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 114 SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 173
S R +++ G +G ++G+ P G+AV+ + +I +ADT N I+ G
Sbjct: 6 SQIKRQRMIYHCKFGEFGVMEGQ-----FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG 60
Query: 174 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV 205
G+ + + P+ A N D++
Sbjct: 61 RFKFQFGECGKRDSQLLYPNRVAVVRNSGDII 92
>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|B Chain B, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|C Chain C, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|E Chain E, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|F Chain F, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|G Chain G, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
Length = 283
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 128 GYYGHVDGRPRGAR-MNHPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKW 182
G+Y V GRP+ + + P L + DR I T++ + D GVTT+ W
Sbjct: 80 GHYASVGGRPQDMKYKDEPTRLVIGDRNTIREFTTIHTG--TVQDAGVTTLGDDNW 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,094,952
Number of Sequences: 62578
Number of extensions: 563159
Number of successful extensions: 1186
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 30
length of query: 507
length of database: 14,973,337
effective HSP length: 103
effective length of query: 404
effective length of database: 8,527,803
effective search space: 3445232412
effective search space used: 3445232412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)