Query 010579
Match_columns 507
No_of_seqs 246 out of 2110
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 99.8 9E-19 2E-23 204.8 24.6 265 34-321 695-984 (1057)
2 PLN02919 haloacid dehalogenase 99.7 1.4E-15 3E-20 178.3 24.5 210 38-257 639-877 (1057)
3 KOG4659 Uncharacterized conser 99.5 3E-13 6.5E-18 153.5 13.8 191 32-230 417-692 (1899)
4 KOG4659 Uncharacterized conser 99.5 1.5E-12 3.2E-17 148.0 18.2 167 67-236 391-577 (1899)
5 PF08450 SGL: SMP-30/Gluconola 99.3 7.5E-11 1.6E-15 115.9 19.2 132 81-247 84-232 (246)
6 PF08450 SGL: SMP-30/Gluconola 99.2 9.7E-10 2.1E-14 108.0 19.8 134 85-250 42-194 (246)
7 COG3386 Gluconolactonase [Carb 98.8 3.9E-07 8.4E-12 94.1 20.5 125 82-234 110-248 (307)
8 COG3386 Gluconolactonase [Carb 98.7 1.2E-06 2.7E-11 90.4 19.9 138 84-254 68-227 (307)
9 COG3391 Uncharacterized conser 98.6 3E-06 6.4E-11 89.7 19.6 141 83-252 116-265 (381)
10 PF01436 NHL: NHL repeat; Int 98.5 1.1E-07 2.5E-12 63.7 4.1 28 142-169 1-28 (28)
11 TIGR02604 Piru_Ver_Nterm putat 98.5 6E-06 1.3E-10 86.8 18.4 140 81-249 12-193 (367)
12 COG4257 Vgb Streptogramin lyas 98.4 3.2E-06 6.9E-11 85.1 13.6 133 83-250 62-199 (353)
13 COG3391 Uncharacterized conser 98.3 1.6E-05 3.4E-10 84.2 16.6 135 83-252 74-219 (381)
14 COG4257 Vgb Streptogramin lyas 98.3 3.4E-05 7.4E-10 77.9 17.7 165 82-265 103-302 (353)
15 KOG1520 Predicted alkaloid syn 98.3 5.4E-06 1.2E-10 86.8 12.1 140 83-254 115-279 (376)
16 PF10282 Lactonase: Lactonase, 98.3 6E-05 1.3E-09 78.5 19.8 124 81-229 190-322 (345)
17 TIGR02604 Piru_Ver_Nterm putat 98.3 3.7E-05 8.1E-10 80.8 18.2 116 83-227 72-211 (367)
18 PF10282 Lactonase: Lactonase, 98.2 8E-05 1.7E-09 77.5 19.4 150 82-252 143-304 (345)
19 PRK11028 6-phosphogluconolacto 98.2 0.00017 3.7E-09 73.8 20.3 145 82-248 174-328 (330)
20 PF01436 NHL: NHL repeat; Int 98.2 3.1E-06 6.7E-11 56.8 4.4 27 83-109 2-28 (28)
21 PF03088 Str_synth: Strictosid 98.1 1.4E-05 3E-10 68.2 8.0 67 87-172 2-87 (89)
22 PRK11028 6-phosphogluconolacto 98.0 0.00065 1.4E-08 69.5 19.7 121 83-229 80-205 (330)
23 KOG1214 Nidogen and related ba 98.0 8.7E-05 1.9E-09 83.3 13.7 119 80-232 1065-1189(1289)
24 PF03088 Str_synth: Strictosid 97.9 5.4E-05 1.2E-09 64.6 7.9 68 146-230 1-88 (89)
25 KOG1214 Nidogen and related ba 97.9 7.5E-05 1.6E-09 83.8 11.1 134 83-250 1025-1166(1289)
26 TIGR03866 PQQ_ABC_repeats PQQ- 97.7 0.011 2.4E-07 57.6 21.4 135 83-247 157-298 (300)
27 PF02239 Cytochrom_D1: Cytochr 97.5 0.01 2.3E-07 62.9 20.7 172 34-253 5-185 (369)
28 TIGR03866 PQQ_ABC_repeats PQQ- 97.4 0.046 1E-06 53.2 21.9 115 84-233 32-149 (300)
29 KOG1520 Predicted alkaloid syn 97.4 0.0046 1E-07 65.2 15.2 101 142-256 114-235 (376)
30 COG2706 3-carboxymuconate cycl 97.3 0.013 2.8E-07 61.1 17.7 157 45-230 157-322 (346)
31 PF06977 SdiA-regulated: SdiA- 97.2 0.0016 3.4E-08 65.6 9.6 76 83-169 171-247 (248)
32 PF07995 GSDH: Glucose / Sorbo 97.2 0.007 1.5E-07 63.1 14.5 124 83-231 2-158 (331)
33 PF06977 SdiA-regulated: SdiA- 97.1 0.046 1E-06 55.1 18.2 74 141-226 169-247 (248)
34 TIGR03118 PEPCTERM_chp_1 conse 96.8 0.038 8.2E-07 57.1 14.6 136 86-249 141-301 (336)
35 TIGR03606 non_repeat_PQQ dehyd 96.8 0.11 2.4E-06 56.7 19.2 89 68-170 18-122 (454)
36 KOG4499 Ca2+-binding protein R 96.6 0.011 2.4E-07 59.0 9.5 81 84-173 159-243 (310)
37 PF05787 DUF839: Bacterial pro 96.6 0.024 5.3E-07 62.9 13.1 95 79-173 346-469 (524)
38 PF07995 GSDH: Glucose / Sorbo 96.6 0.023 5E-07 59.2 12.2 127 84-222 50-204 (331)
39 TIGR02658 TTQ_MADH_Hv methylam 96.5 0.072 1.6E-06 56.3 15.2 112 94-235 13-142 (352)
40 PF03022 MRJP: Major royal jel 96.5 0.026 5.7E-07 57.8 11.6 151 36-217 79-253 (287)
41 TIGR02658 TTQ_MADH_Hv methylam 96.5 0.33 7.1E-06 51.4 20.0 68 148-233 253-334 (352)
42 PF05096 Glu_cyclase_2: Glutam 96.3 0.59 1.3E-05 47.6 19.7 116 84-235 91-209 (264)
43 KOG4499 Ca2+-binding protein R 96.2 0.039 8.5E-07 55.2 10.7 83 141-234 156-246 (310)
44 PF13449 Phytase-like: Esteras 96.1 0.15 3.2E-06 53.1 15.0 135 83-230 85-252 (326)
45 TIGR03606 non_repeat_PQQ dehyd 96.0 0.61 1.3E-05 51.1 19.6 118 84-221 80-251 (454)
46 COG2706 3-carboxymuconate cycl 96.0 0.17 3.7E-06 53.0 14.4 165 84-274 146-322 (346)
47 PF01731 Arylesterase: Arylest 96.0 0.046 1E-06 46.4 8.5 30 141-170 52-82 (86)
48 PF02239 Cytochrom_D1: Cytochr 95.3 0.14 3E-06 54.4 11.0 100 95-232 7-111 (369)
49 COG2133 Glucose/sorbosone dehy 95.1 0.38 8.3E-06 51.7 13.7 133 83-230 239-398 (399)
50 TIGR03118 PEPCTERM_chp_1 conse 94.9 1 2.3E-05 46.8 15.5 161 82-259 22-208 (336)
51 PF03022 MRJP: Major royal jel 94.9 0.091 2E-06 53.9 8.0 64 84-160 187-253 (287)
52 COG3211 PhoX Predicted phospha 94.5 0.37 8E-06 53.5 11.9 81 82-162 416-519 (616)
53 TIGR03032 conserved hypothetic 94.5 1.3 2.9E-05 46.2 15.2 139 84-248 104-251 (335)
54 COG3204 Uncharacterized protei 94.5 0.13 2.7E-06 53.0 7.7 73 87-170 237-310 (316)
55 PF00058 Ldl_recept_b: Low-den 94.3 0.14 3.1E-06 37.4 5.7 41 94-152 1-42 (42)
56 COG3204 Uncharacterized protei 94.3 7.8 0.00017 40.3 20.1 154 82-253 128-297 (316)
57 smart00135 LY Low-density lipo 93.6 0.16 3.5E-06 35.7 4.8 33 141-173 7-40 (43)
58 COG4946 Uncharacterized protei 93.5 4.9 0.00011 44.1 17.5 166 86-259 279-463 (668)
59 KOG0266 WD40 repeat-containing 93.5 1.8 3.9E-05 47.1 14.9 113 84-232 205-321 (456)
60 PF13449 Phytase-like: Esteras 93.2 3.1 6.7E-05 43.3 15.6 30 144-173 86-121 (326)
61 PF05096 Glu_cyclase_2: Glutam 92.6 3.7 7.9E-05 42.0 14.4 111 84-230 46-158 (264)
62 PF05787 DUF839: Bacterial pro 92.4 0.58 1.3E-05 52.1 9.3 81 139-220 346-456 (524)
63 PRK02888 nitrous-oxide reducta 92.3 5.1 0.00011 45.6 16.3 82 143-230 321-405 (635)
64 KOG1215 Low-density lipoprotei 91.8 1.9 4.2E-05 50.7 13.2 141 83-257 480-628 (877)
65 smart00135 LY Low-density lipo 91.4 0.64 1.4E-05 32.5 5.5 35 197-231 7-41 (43)
66 PF02333 Phytase: Phytase; In 91.3 5.3 0.00012 42.9 14.6 78 83-173 208-291 (381)
67 KOG1446 Histone H3 (Lys4) meth 91.3 12 0.00026 38.9 16.5 74 75-170 95-168 (311)
68 cd00200 WD40 WD40 domain, foun 90.6 14 0.00031 34.1 15.8 112 84-232 95-210 (289)
69 PF02333 Phytase: Phytase; In 90.5 28 0.00061 37.5 20.0 64 200-264 209-281 (381)
70 PF01731 Arylesterase: Arylest 90.0 1.2 2.5E-05 37.9 6.7 33 198-230 53-85 (86)
71 KOG3567 Peptidylglycine alpha- 89.7 1.2 2.6E-05 48.4 8.1 127 83-229 168-298 (501)
72 KOG0289 mRNA splicing factor [ 89.2 32 0.00068 37.6 18.0 112 84-230 349-463 (506)
73 PF14269 Arylsulfotran_2: Aryl 88.3 11 0.00024 39.0 13.9 132 83-232 144-292 (299)
74 PF14269 Arylsulfotran_2: Aryl 88.3 34 0.00074 35.4 19.1 88 141-233 142-244 (299)
75 PF06739 SBBP: Beta-propeller 88.1 0.42 9.2E-06 34.3 2.3 21 143-163 13-33 (38)
76 KOG1446 Histone H3 (Lys4) meth 87.2 26 0.00056 36.5 15.4 121 84-232 142-265 (311)
77 COG2133 Glucose/sorbosone dehy 86.8 3.4 7.3E-05 44.6 9.2 77 83-173 314-398 (399)
78 PTZ00421 coronin; Provisional 86.6 26 0.00056 38.8 16.3 115 85-233 78-202 (493)
79 PRK04792 tolB translocation pr 86.2 55 0.0012 35.5 20.8 67 87-172 266-338 (448)
80 KOG0266 WD40 repeat-containing 85.9 57 0.0012 35.5 20.3 115 84-234 248-369 (456)
81 cd00200 WD40 WD40 domain, foun 85.8 29 0.00063 32.0 16.8 111 84-232 137-252 (289)
82 PRK02888 nitrous-oxide reducta 85.4 19 0.00041 41.1 14.5 32 199-230 321-352 (635)
83 KOG1215 Low-density lipoprotei 85.3 8.3 0.00018 45.5 12.4 133 84-250 438-577 (877)
84 KOG0772 Uncharacterized conser 84.1 22 0.00048 39.5 13.7 132 83-234 318-461 (641)
85 TIGR03032 conserved hypothetic 83.5 4.9 0.00011 42.1 8.3 55 83-159 203-257 (335)
86 PF14517 Tachylectin: Tachylec 82.4 9.8 0.00021 38.1 9.7 114 87-234 85-211 (229)
87 PF06739 SBBP: Beta-propeller 82.2 2.8 6.1E-05 30.0 4.3 22 83-104 13-34 (38)
88 TIGR02276 beta_rpt_yvtn 40-res 81.8 4.1 9E-05 28.4 5.1 39 209-247 2-41 (42)
89 KOG0318 WD40 repeat stress pro 81.7 95 0.0021 34.8 21.9 151 84-254 322-502 (603)
90 PF00058 Ldl_recept_b: Low-den 80.9 6.3 0.00014 28.6 5.8 38 211-248 1-41 (42)
91 KOG0271 Notchless-like WD40 re 80.6 42 0.00091 36.2 13.8 119 86-235 119-241 (480)
92 COG3211 PhoX Predicted phospha 80.4 7.9 0.00017 43.4 8.9 81 139-221 413-521 (616)
93 PRK04922 tolB translocation pr 79.5 94 0.002 33.3 20.8 67 87-172 252-324 (433)
94 TIGR02800 propeller_TolB tol-p 78.7 89 0.0019 32.7 20.7 69 86-173 237-311 (417)
95 PRK05137 tolB translocation pr 78.7 99 0.0021 33.1 20.8 72 87-177 250-329 (435)
96 TIGR02276 beta_rpt_yvtn 40-res 78.6 9.3 0.0002 26.6 6.1 19 94-112 4-22 (42)
97 KOG0279 G protein beta subunit 77.6 76 0.0016 33.0 14.2 113 85-230 66-181 (315)
98 PRK04922 tolB translocation pr 77.6 1.1E+02 0.0023 32.9 18.7 68 86-172 295-368 (433)
99 KOG0281 Beta-TrCP (transducin 77.6 20 0.00044 38.1 10.4 129 85-235 238-394 (499)
100 KOG1408 WD40 repeat protein [F 77.1 35 0.00076 39.5 12.7 113 84-229 598-713 (1080)
101 PTZ00420 coronin; Provisional 77.1 95 0.002 35.3 16.4 121 84-234 76-202 (568)
102 KOG0283 WD40 repeat-containing 76.9 29 0.00062 40.2 12.2 117 84-230 411-533 (712)
103 KOG2055 WD40 repeat protein [G 76.2 1.1E+02 0.0025 33.7 15.8 39 190-229 474-512 (514)
104 PRK04792 tolB translocation pr 76.0 1.2E+02 0.0027 32.8 18.6 70 85-173 308-383 (448)
105 smart00284 OLF Olfactomedin-li 75.8 98 0.0021 31.6 16.7 166 24-227 74-252 (255)
106 KOG0291 WD40-repeat-containing 74.2 1.5E+02 0.0032 34.7 16.7 114 83-231 351-468 (893)
107 PF07433 DUF1513: Protein of u 74.0 1.2E+02 0.0026 31.8 15.3 157 80-251 96-269 (305)
108 KOG3881 Uncharacterized conser 73.7 1.2E+02 0.0026 32.8 15.0 115 83-230 203-321 (412)
109 KOG0263 Transcription initiati 73.5 27 0.00058 40.2 10.8 111 88-234 541-654 (707)
110 KOG0303 Actin-binding protein 73.3 54 0.0012 35.5 12.3 117 84-232 175-297 (472)
111 PTZ00421 coronin; Provisional 73.2 1.5E+02 0.0032 33.0 16.5 71 84-172 127-198 (493)
112 KOG0318 WD40 repeat stress pro 72.9 1.7E+02 0.0036 33.0 19.4 117 80-233 403-521 (603)
113 PRK03629 tolB translocation pr 72.4 1.5E+02 0.0031 32.0 20.6 72 87-177 247-326 (429)
114 PF05935 Arylsulfotrans: Aryls 72.3 53 0.0012 36.2 12.8 133 85-222 192-370 (477)
115 PF05935 Arylsulfotrans: Aryls 71.9 1.4E+02 0.0029 33.0 15.8 130 88-235 153-307 (477)
116 KOG0272 U4/U6 small nuclear ri 71.8 73 0.0016 34.7 12.9 115 84-234 305-423 (459)
117 PLN00181 protein SPA1-RELATED; 71.0 1.3E+02 0.0028 35.1 16.2 122 84-234 485-611 (793)
118 PF06433 Me-amine-dh_H: Methyl 70.9 26 0.00056 37.2 9.4 111 95-234 4-131 (342)
119 COG3823 Glutamine cyclotransfe 70.5 12 0.00025 37.4 6.3 62 93-160 185-247 (262)
120 PRK02889 tolB translocation pr 70.3 1.6E+02 0.0034 31.6 20.9 68 87-173 244-317 (427)
121 KOG0316 Conserved WD40 repeat- 69.2 1.4E+02 0.003 30.5 16.1 83 140-229 180-268 (307)
122 PF13360 PQQ_2: PQQ-like domai 68.4 1.1E+02 0.0024 29.0 16.2 64 89-173 32-96 (238)
123 KOG0640 mRNA cleavage stimulat 67.1 65 0.0014 34.0 11.1 122 85-235 175-297 (430)
124 KOG4649 PQQ (pyrrolo-quinoline 66.8 1.7E+02 0.0036 30.5 14.7 75 149-231 142-219 (354)
125 TIGR03300 assembly_YfgL outer 66.3 1.7E+02 0.0036 30.4 16.2 24 148-173 101-125 (377)
126 PTZ00420 coronin; Provisional 66.2 2.3E+02 0.005 32.2 16.3 71 84-173 127-198 (568)
127 KOG1274 WD40 repeat protein [G 66.1 2.1E+02 0.0046 34.1 16.0 31 140-170 93-124 (933)
128 PRK01742 tolB translocation pr 65.9 1.7E+02 0.0037 31.3 14.8 31 147-177 252-287 (429)
129 PRK05137 tolB translocation pr 64.7 2E+02 0.0044 30.8 19.6 68 87-173 294-367 (435)
130 PLN00181 protein SPA1-RELATED; 62.4 3E+02 0.0064 32.1 16.9 109 85-230 535-649 (793)
131 PRK00178 tolB translocation pr 62.0 2.2E+02 0.0047 30.2 21.2 66 87-171 247-318 (430)
132 KOG3567 Peptidylglycine alpha- 61.9 12 0.00027 40.9 5.0 34 140-173 464-497 (501)
133 KOG0282 mRNA splicing factor [ 61.2 1.3E+02 0.0029 33.3 12.5 113 83-230 300-416 (503)
134 PRK02889 tolB translocation pr 60.8 2.4E+02 0.0052 30.3 16.5 27 147-173 244-273 (427)
135 KOG0319 WD40-repeat-containing 60.8 85 0.0018 36.4 11.4 114 88-235 25-141 (775)
136 KOG0640 mRNA cleavage stimulat 60.0 1.1E+02 0.0023 32.4 11.1 77 86-177 220-299 (430)
137 KOG0272 U4/U6 small nuclear ri 59.2 74 0.0016 34.6 10.1 78 84-179 347-428 (459)
138 PRK03629 tolB translocation pr 59.0 2.6E+02 0.0056 30.1 18.9 74 85-177 289-370 (429)
139 KOG0291 WD40-repeat-containing 58.8 3.7E+02 0.0079 31.7 16.5 127 86-232 482-615 (893)
140 PF14517 Tachylectin: Tachylec 58.6 1.5E+02 0.0032 29.9 11.7 110 86-230 37-160 (229)
141 KOG0315 G-protein beta subunit 58.0 2.3E+02 0.005 29.2 14.6 124 85-238 170-297 (311)
142 COG3823 Glutamine cyclotransfe 56.6 2.3E+02 0.0049 28.7 17.0 69 153-228 185-258 (262)
143 PRK01029 tolB translocation pr 56.4 2.9E+02 0.0063 29.9 14.9 71 86-173 284-360 (428)
144 KOG0315 G-protein beta subunit 56.3 2.4E+02 0.0052 29.1 12.6 117 85-235 43-160 (311)
145 KOG0286 G-protein beta subunit 55.6 2.4E+02 0.0053 29.6 12.7 109 85-227 189-301 (343)
146 PRK04043 tolB translocation pr 55.5 3E+02 0.0065 29.8 18.0 25 89-113 283-310 (419)
147 smart00108 B_lectin Bulb-type 54.0 1E+02 0.0022 26.7 8.7 55 145-224 55-109 (114)
148 PRK01742 tolB translocation pr 53.6 3.1E+02 0.0067 29.4 19.3 68 87-173 252-325 (429)
149 smart00108 B_lectin Bulb-type 53.4 86 0.0019 27.2 8.2 53 84-164 54-106 (114)
150 KOG0289 mRNA splicing factor [ 53.4 3E+02 0.0065 30.4 13.5 70 145-232 350-422 (506)
151 KOG0265 U5 snRNP-specific prot 52.8 3E+02 0.0065 29.0 14.4 69 85-170 50-118 (338)
152 PF06788 UPF0257: Uncharacteri 52.5 2.3E+02 0.0051 28.6 12.0 59 1-70 1-59 (236)
153 smart00284 OLF Olfactomedin-li 51.2 2.6E+02 0.0056 28.6 12.2 77 93-175 83-164 (255)
154 PRK00178 tolB translocation pr 50.5 3.3E+02 0.0072 28.8 18.0 69 86-173 202-276 (430)
155 KOG1036 Mitotic spindle checkp 50.3 2.7E+02 0.0058 29.3 12.2 111 87-235 59-169 (323)
156 cd00028 B_lectin Bulb-type man 48.4 1.1E+02 0.0024 26.6 8.1 52 84-163 55-106 (116)
157 PF08662 eIF2A: Eukaryotic tra 48.1 2.5E+02 0.0055 26.7 14.5 72 85-177 62-138 (194)
158 COG1520 FOG: WD40-like repeat 46.4 3.6E+02 0.0079 28.1 14.4 66 90-173 65-131 (370)
159 KOG1274 WD40 repeat protein [G 46.2 4E+02 0.0087 31.9 13.9 110 85-230 16-127 (933)
160 KOG2055 WD40 repeat protein [G 46.2 4.1E+02 0.0089 29.5 13.2 26 147-172 308-333 (514)
161 KOG0772 Uncharacterized conser 45.6 2E+02 0.0044 32.3 11.0 75 86-173 171-245 (641)
162 TIGR02800 propeller_TolB tol-p 45.5 3.7E+02 0.0081 28.0 18.1 68 87-173 282-355 (417)
163 COG4246 Uncharacterized protei 44.8 3.8E+02 0.0082 27.9 12.0 80 84-173 75-164 (340)
164 KOG0293 WD40 repeat-containing 44.3 3.2E+02 0.0068 30.1 11.9 113 82-232 312-428 (519)
165 KOG0973 Histone transcription 43.9 2.3E+02 0.0051 34.0 11.8 68 85-170 132-199 (942)
166 PF02191 OLF: Olfactomedin-lik 43.8 3.6E+02 0.0078 27.3 17.5 170 24-228 69-248 (250)
167 PRK11138 outer membrane biogen 43.4 3.1E+02 0.0066 28.9 12.0 98 88-224 260-358 (394)
168 KOG0308 Conserved WD40 repeat- 43.1 2.9E+02 0.0064 31.9 11.9 122 83-235 118-249 (735)
169 KOG1273 WD40 repeat protein [G 42.1 2.6E+02 0.0057 29.7 10.7 71 85-173 26-97 (405)
170 KOG0263 Transcription initiati 41.6 5E+02 0.011 30.4 13.7 33 146-178 539-574 (707)
171 KOG2110 Uncharacterized conser 40.6 1.2E+02 0.0026 32.5 8.1 69 85-170 176-246 (391)
172 KOG0292 Vesicle coat complex C 40.3 4.2E+02 0.0092 32.0 12.9 137 71-230 197-349 (1202)
173 KOG0286 G-protein beta subunit 39.7 4.1E+02 0.0089 28.0 11.5 80 84-179 231-313 (343)
174 PF00400 WD40: WD domain, G-be 38.9 63 0.0014 21.7 4.1 27 84-110 13-39 (39)
175 cd00028 B_lectin Bulb-type man 38.6 1.9E+02 0.004 25.1 8.0 56 144-224 55-110 (116)
176 TIGR03300 assembly_YfgL outer 37.5 4.8E+02 0.01 26.9 12.5 25 147-173 274-299 (377)
177 KOG0276 Vesicle coat complex C 35.4 7.7E+02 0.017 28.7 14.0 128 83-249 352-482 (794)
178 PF07494 Reg_prop: Two compone 35.2 43 0.00094 21.3 2.5 18 143-160 5-22 (24)
179 PRK13861 type IV secretion sys 34.0 3.5E+02 0.0077 28.0 10.3 9 103-111 107-115 (292)
180 PRK04043 tolB translocation pr 32.9 6.6E+02 0.014 27.1 21.5 67 88-173 238-310 (419)
181 KOG1273 WD40 repeat protein [G 32.3 6.5E+02 0.014 26.9 12.8 67 149-229 160-226 (405)
182 KOG0310 Conserved WD40 repeat- 32.3 5.5E+02 0.012 28.6 11.7 110 85-231 71-186 (487)
183 PF06433 Me-amine-dh_H: Methyl 32.1 3.1E+02 0.0067 29.3 9.6 75 88-173 41-127 (342)
184 PF07433 DUF1513: Protein of u 32.0 2.3E+02 0.005 29.8 8.5 69 83-173 217-286 (305)
185 KOG0292 Vesicle coat complex C 31.8 9.6E+02 0.021 29.2 14.0 129 83-227 251-397 (1202)
186 PRK01029 tolB translocation pr 31.6 6.9E+02 0.015 26.9 21.0 25 147-171 285-312 (428)
187 PF02191 OLF: Olfactomedin-lik 29.8 6E+02 0.013 25.7 11.8 73 93-173 78-157 (250)
188 COG4946 Uncharacterized protei 28.3 9E+02 0.02 27.3 16.0 112 85-230 371-488 (668)
189 PF13360 PQQ_2: PQQ-like domai 28.0 5.1E+02 0.011 24.3 19.5 118 85-234 115-235 (238)
190 KOG0771 Prolactin regulatory e 27.9 6.8E+02 0.015 27.3 11.3 54 196-250 279-335 (398)
191 PRK02710 plastocyanin; Provisi 27.3 4.3E+02 0.0094 23.2 9.3 17 1-17 1-17 (119)
192 KOG0294 WD40 repeat-containing 27.1 6.1E+02 0.013 27.0 10.5 57 84-159 129-186 (362)
193 KOG0282 mRNA splicing factor [ 26.9 3E+02 0.0064 30.7 8.5 109 93-236 226-337 (503)
194 KOG2096 WD40 repeat protein [G 26.7 1.9E+02 0.0041 30.8 6.7 77 144-230 88-164 (420)
195 COG5276 Uncharacterized conser 25.8 8.3E+02 0.018 26.0 11.7 59 146-222 132-193 (370)
196 KOG0639 Transducin-like enhanc 25.6 6.8E+02 0.015 28.4 11.0 66 146-230 513-582 (705)
197 PF15416 DUF4623: Domain of un 25.6 3.2E+02 0.0069 29.4 8.2 83 83-173 183-272 (442)
198 PRK02939 lipoprotein; Reviewed 25.4 7.2E+02 0.016 25.2 12.7 59 1-70 1-59 (236)
199 KOG0306 WD40-repeat-containing 25.0 7.8E+02 0.017 29.2 11.7 125 85-234 457-585 (888)
200 KOG4378 Nuclear protein COP1 [ 24.8 7.3E+02 0.016 28.1 11.0 69 145-232 211-283 (673)
201 KOG0268 Sof1-like rRNA process 24.7 78 0.0017 34.0 3.6 74 83-173 230-303 (433)
202 KOG1963 WD40 repeat protein [G 24.1 1.1E+03 0.024 28.1 12.8 85 141-232 290-378 (792)
203 PF15525 DUF4652: Domain of un 23.2 3E+02 0.0065 27.1 7.0 23 207-229 136-158 (200)
204 KOG0308 Conserved WD40 repeat- 23.2 8.6E+02 0.019 28.3 11.4 72 84-173 173-244 (735)
205 KOG0285 Pleiotropic regulator 23.1 7.8E+02 0.017 26.8 10.5 69 84-170 153-221 (460)
206 PF14339 DUF4394: Domain of un 23.0 8E+02 0.017 24.8 14.8 27 85-112 29-56 (236)
207 TIGR02608 delta_60_rpt delta-6 22.6 1.4E+02 0.003 23.3 3.8 30 85-114 3-39 (55)
208 KOG4441 Proteins containing BT 22.2 1.2E+03 0.025 26.5 16.7 140 45-236 349-506 (571)
209 KOG0299 U3 snoRNP-associated p 21.8 1.1E+03 0.024 26.2 12.8 29 85-113 205-233 (479)
210 PF12276 DUF3617: Protein of u 21.8 78 0.0017 29.1 2.7 16 1-16 1-16 (162)
211 PF11768 DUF3312: Protein of u 21.5 1.2E+03 0.026 26.6 12.1 70 83-172 260-329 (545)
212 PF01453 B_lectin: D-mannose b 21.3 3.8E+02 0.0082 23.4 6.9 53 85-163 20-72 (114)
213 KOG1539 WD repeat protein [Gen 21.2 1.4E+03 0.03 27.5 12.7 114 84-234 495-611 (910)
214 KOG0647 mRNA export protein (c 21.1 1E+03 0.022 25.3 12.6 68 85-170 30-100 (347)
215 PRK12690 flgF flagellar basal 21.1 2.6E+02 0.0056 28.1 6.5 75 84-170 77-160 (238)
216 KOG0316 Conserved WD40 repeat- 20.6 9.5E+02 0.021 24.8 11.8 127 87-248 64-192 (307)
217 PF01453 B_lectin: D-mannose b 20.5 4.8E+02 0.01 22.8 7.4 56 146-225 21-77 (114)
218 PF05586 Ant_C: Anthrax recept 20.4 87 0.0019 27.0 2.4 17 367-383 21-37 (95)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.82 E-value=9e-19 Score=204.83 Aligned_cols=265 Identities=22% Similarity=0.239 Sum_probs=178.4
Q ss_pred ceEeEEEecCCcEEEEEeCCCCeEE--ecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEe
Q 010579 34 GIVSNVVSALVKWLWSLKDSPKTAV--SSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKIS 110 (507)
Q Consensus 34 G~l~~va~ag~~~I~~~d~~t~~i~--aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~ 110 (507)
+.++ +++.++++||+++..++.+. .|.+......|. ......+..|.+|+++++|. |||+|..+++|++|+
T Consensus 695 g~Ly-Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~-----~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D 768 (1057)
T PLN02919 695 EKVY-IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGS-----SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALD 768 (1057)
T ss_pred CeEE-EEECCCCeEEEEECCCCeEEEEecCCccccCCCC-----ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 4455 88899999999998776543 221111101110 01122346899999999886 999999999999999
Q ss_pred CCCCCCCccEEEecCCC------CccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCCC--cEEEecCcc
Q 010579 111 TSLSPYSRPKLVAGSPE------GYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG--VTTIAGGKW 182 (507)
Q Consensus 111 ~~g~~~g~i~~vaG~~~------G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~G--VstIaGG~~ 182 (507)
.++ +...+++|... ..+|..+|....+.|++|.||++|++|+|||||+.|++|++||.++ +.+++|..
T Consensus 769 ~~t---g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G- 844 (1057)
T PLN02919 769 LKT---GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG- 844 (1057)
T ss_pred CCC---CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC-
Confidence 873 44455554321 1234446666677899999999999999999999999999999654 77887632
Q ss_pred cCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee---eC--CCCCccceEE-------EE-e
Q 010579 183 SRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS---DN--YDDTFHLGIF-------VL-V 249 (507)
Q Consensus 183 g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~---~~--~~~G~p~gIa-------~~-~ 249 (507)
. .|+.||....+.|+.|.+|+ ++.+|+|||+|.+|++|++|++.+.... .. .+...|..+. .. .
T Consensus 845 -~-~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 921 (1057)
T PLN02919 845 -K-AGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGEAAEILTLELKGVQPPRPKSKSLKRLRRRSS 921 (1057)
T ss_pred -C-cCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCccceeEeeccccccCCCCcccchhhhhhccc
Confidence 1 35567878889999999998 4788999999999999999999886541 11 1111121111 00 0
Q ss_pred cceeEEehhHHHhcccCcccccccCCccccCCCCCCCCCCCCCCCCC-CCCCcCCCCCCCCCCCCCccchhhh
Q 010579 250 AAAFFGYMLALLQRRVQAMFSSKDDPRTQMKRGPPAVAPYQRPPKSA-RPPLVPTEDDFEKPEEGFFGSIGRL 321 (507)
Q Consensus 250 ~a~~~gy~~~~lq~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (507)
...-+-...+.. .+-|.+.+..+.++ ...|++++|.+|.++.. .+.++ .++-+|++.+=|+-
T Consensus 922 ~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 984 (1057)
T PLN02919 922 ADTQVIKVDGVT-SLEGDLQLKISLPP---GYHFSKEARSKFEVEVEPENAVD------IDPDEGTLSPDGRA 984 (1057)
T ss_pred ccCceeecCCcc-cccceEEEEEECCC---CCccCcCCCceeEEEeccCCceE------ecCCCceECCCCeE
Confidence 111122333333 45567777777765 89999999999998744 22222 45556777655544
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.70 E-value=1.4e-15 Score=178.30 Aligned_cols=210 Identities=17% Similarity=0.250 Sum_probs=144.9
Q ss_pred EEEecCCcEEEEEeCCCCeEE--ecCcceEeeCCeeeEEeecC-CCCCCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCC
Q 010579 38 NVVSALVKWLWSLKDSPKTAV--SSSSMIKFEGGYTVETVFEG-SKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSL 113 (507)
Q Consensus 38 ~va~ag~~~I~~~d~~t~~i~--aG~~~~~~~~G~~~~~~~~G-~~~~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g 113 (507)
.+++..++.|.+++..++.+. +|.+..... ..+...+ ...++.|++|++++ +|.|||+|..+++|++++..
T Consensus 639 YVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~----~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~- 713 (1057)
T PLN02919 639 YVADTENHALREIDFVNETVRTLAGNGTKGSD----YQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS- 713 (1057)
T ss_pred EEEeCCCceEEEEecCCCEEEEEeccCcccCC----CCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC-
Confidence 388888899999988776543 332211110 0000001 12256899999999 78899999999999999987
Q ss_pred CCCCccEEEecCCCCccccCCC-CcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcCC-C-cEEEecCccc-----C
Q 010579 114 SPYSRPKLVAGSPEGYYGHVDG-RPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT-G-VTTIAGGKWS-----R 184 (507)
Q Consensus 114 ~~~g~i~~vaG~~~G~~G~~dG-~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~~-G-VstIaGG~~g-----~ 184 (507)
.+.+.+++|.+ .....+| ....+.|+.|.||+++++|+ |||||+.|++|+++|.+ + +.+++|+... .
T Consensus 714 --~g~v~~~~G~G--~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 714 --DGVTRVFSGDG--YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLF 789 (1057)
T ss_pred --CCeEEEEecCC--ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccc
Confidence 36667777653 2221122 22345789999999999987 99999999999999953 3 6666654321 1
Q ss_pred CCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeCCCC---------------CccceEEEEe
Q 010579 185 GVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDD---------------TFHLGIFVLV 249 (507)
Q Consensus 185 ~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~~~~---------------G~p~gIa~~~ 249 (507)
..|..+|....+.|..|.+|++ +.+|.|||+|.+|++|++|++.+..+....+. ..|.||++..
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~ 868 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE 868 (1057)
T ss_pred cccCCCCchhhhhccCCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC
Confidence 1334456666778999999985 78899999999999999999988776542221 1477888865
Q ss_pred c-ceeEEeh
Q 010579 250 A-AAFFGYM 257 (507)
Q Consensus 250 ~-a~~~gy~ 257 (507)
. ..|+.+.
T Consensus 869 dG~lyVaDt 877 (1057)
T PLN02919 869 NGRLFVADT 877 (1057)
T ss_pred CCCEEEEEC
Confidence 3 3455443
No 3
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.47 E-value=3e-13 Score=153.53 Aligned_cols=191 Identities=20% Similarity=0.323 Sum_probs=136.9
Q ss_pred ecceEeEEEecCCcEEEEEeCCCC-------eEEecCcceEeeCCeee-EEeecCCCCCCCeeEEEEcCCCcEEEEeCCC
Q 010579 32 VAGIVSNVVSALVKWLWSLKDSPK-------TAVSSSSMIKFEGGYTV-ETVFEGSKFGMEPFSVAVSPSGELLVLDSEN 103 (507)
Q Consensus 32 vsG~l~~va~ag~~~I~~~d~~t~-------~i~aG~~~~~~~~G~~~-~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n 103 (507)
++|.++ +.+...++||++..... ++++|.+..|....-.+ .+...-.+.+..|.||+||.+|+||++|..
T Consensus 417 vdgtly-vSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t- 494 (1899)
T KOG4659|consen 417 VDGTLY-VSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT- 494 (1899)
T ss_pred cCceEE-ecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-
Confidence 467777 77788899999864333 36667666665322211 112233455689999999999999999975
Q ss_pred CeEEEEeCCCCCCCccEEEecCCCC------cccc------------------C------------------------CC
Q 010579 104 SNIYKISTSLSPYSRPKLVAGSPEG------YYGH------------------V------------------------DG 135 (507)
Q Consensus 104 ~rI~ki~~~g~~~g~i~~vaG~~~G------~~G~------------------~------------------------dG 135 (507)
+|++|+.+ |.++++.|+..- |.+. . -|
T Consensus 495 -~IR~iD~~----giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~G 569 (1899)
T KOG4659|consen 495 -RIRVIDTT----GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILG 569 (1899)
T ss_pred -EEEEeccC----ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcC
Confidence 99999987 667777665311 1000 0 01
Q ss_pred C----------------cccccCCCcceEEEcCCCCEEEEeCCC---CeEEEEcCCC-cEEEecCcccCC------C---
Q 010579 136 R----------------PRGARMNHPKGLAVDDRGNIYIADTMN---MAIRKISDTG-VTTIAGGKWSRG------V--- 186 (507)
Q Consensus 136 ~----------------~~~a~fn~P~GIaVd~dGnIYVADs~N---~rIrk~d~~G-VstIaGG~~g~~------~--- 186 (507)
. +....+-.|..|+|..+|.||||++.. +|||+++++| +..+||+++.-. +
T Consensus 570 rP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcf 649 (1899)
T KOG4659|consen 570 RPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCF 649 (1899)
T ss_pred CccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccc
Confidence 1 123445667899999999999999874 6789999999 889998765311 1
Q ss_pred CCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 187 GHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 187 G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
...|..+..|.|+.|..+| +.++|.|||||.+|-|||+++...
T Consensus 650 s~~~~~At~A~lnsp~ala-VsPdg~v~IAD~gN~rIr~Vs~~~ 692 (1899)
T KOG4659|consen 650 SLRDVAATQAKLNSPYALA-VSPDGDVIIADSGNSRIRKVSARM 692 (1899)
T ss_pred cccchhhhccccCCcceEE-ECCCCcEEEecCCchhhhhhhhcc
Confidence 2334468899999999998 689999999999999999998654
No 4
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.46 E-value=1.5e-12 Score=148.04 Aligned_cols=167 Identities=26% Similarity=0.330 Sum_probs=120.5
Q ss_pred eCCeeeEEeecCCCCCCCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCC--CCccEEEecCCCCc------cccCCCCc
Q 010579 67 EGGYTVETVFEGSKFGMEPFSVAVSP-SGELLVLDSENSNIYKISTSLSP--YSRPKLVAGSPEGY------YGHVDGRP 137 (507)
Q Consensus 67 ~~G~~~~~~~~G~~~~~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~--~g~i~~vaG~~~G~------~G~~dG~~ 137 (507)
.+|.......-+...-.+-+.||++| ||.|||+|+..++|+|+...... .....+++|.++-| ||+ .+.+
T Consensus 391 ~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD-GalA 469 (1899)
T KOG4659|consen 391 QDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD-GALA 469 (1899)
T ss_pred CCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc-chhc
Confidence 34443333333333445788999999 99999999999999999743222 34567899988654 553 5568
Q ss_pred ccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCCC-cEEEecCcccC--CCCCCCC-CccCccCCCCceEEEEcCCCeE
Q 010579 138 RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG-VTTIAGGKWSR--GVGHVDG-PSEDAKFSNDFDVVYVGSSCSL 213 (507)
Q Consensus 138 ~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~G-VstIaGG~~g~--~~G~~dg-~~~~a~f~~P~gIa~vd~~G~L 213 (507)
.+|+|..|+||++|.+|+||+||.. +||++|.+| |+|+.|...-. .-.+... ...+.+|.+|.++++.+-+++|
T Consensus 470 ~dA~L~~PkGIa~dk~g~lYfaD~t--~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl 547 (1899)
T KOG4659|consen 470 QDAQLIFPKGIAFDKMGNLYFADGT--RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSL 547 (1899)
T ss_pred ccceeccCCceeEccCCcEEEeccc--EEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeE
Confidence 8999999999999999999999965 499999999 78886643211 1112222 2345678999999988889999
Q ss_pred EEEeC-------CCCeEEEEECCCCceeeC
Q 010579 214 LVIDR-------GNQAIREIQLHDDDCSDN 236 (507)
Q Consensus 214 yVaD~-------gn~rIr~I~l~~~~~~~~ 236 (507)
||.|. -+++|+.|.-....|...
T Consensus 548 ~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a 577 (1899)
T KOG4659|consen 548 LVLDTNVVLRITVVHRVRIILGRPTHCDLA 577 (1899)
T ss_pred EEeecceEEEEccCccEEEEcCCccccccC
Confidence 99995 366677666666667653
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.34 E-value=7.5e-11 Score=115.89 Aligned_cols=132 Identities=23% Similarity=0.269 Sum_probs=96.2
Q ss_pred CCCCeeEEEEcCCCcEEEEeCCC--------CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC
Q 010579 81 FGMEPFSVAVSPSGELLVLDSEN--------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD 152 (507)
Q Consensus 81 ~~~~P~gIaVd~dG~LYVaDs~n--------~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~ 152 (507)
....|+++++|++|+|||+|... ++|++++++ +.+..+.. .|..|+||++++
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~----------------~~~~pNGi~~s~ 143 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVAD----------------GLGFPNGIAFSP 143 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEE----------------EESSEEEEEEET
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEEEEec----------------CcccccceEECC
Confidence 55789999999999999999875 579999986 44444432 367899999999
Q ss_pred CCC-EEEEeCCCCeEEEEcCC--C--c---EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEE
Q 010579 153 RGN-IYIADTMNMAIRKISDT--G--V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 224 (507)
Q Consensus 153 dGn-IYVADs~N~rIrk~d~~--G--V---stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr 224 (507)
+|+ |||+|+.+++|++++.+ + + .+++.... ....|.|++ +|.+|+|||++.++++|+
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~pDG~~-vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--------------GPGYPDGLA-VDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS--------------SSCEEEEEE-EBTTS-EEEEEETTTEEE
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcCC--------------CCcCCCcce-EcCCCCEEEEEcCCCEEE
Confidence 997 99999999999999942 3 2 12221110 013588998 699999999999999999
Q ss_pred EEECCCCceeeCC-CCCccceEEE
Q 010579 225 EIQLHDDDCSDNY-DDTFHLGIFV 247 (507)
Q Consensus 225 ~I~l~~~~~~~~~-~~G~p~gIa~ 247 (507)
++++++..+.... ....|+.+++
T Consensus 209 ~~~p~G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 209 VFDPDGKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEETTSCEEEEEE-SSSSEEEEEE
T ss_pred EECCCccEEEEEcCCCCCEEEEEE
Confidence 9999976554322 2235666666
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.22 E-value=9.7e-10 Score=108.01 Aligned_cols=134 Identities=26% Similarity=0.370 Sum_probs=97.2
Q ss_pred eeEEEEc-CCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 85 PFSVAVS-PSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 85 P~gIaVd-~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
|.+++++ ++|.|||++.. .+.+++.. .+.+..++.... ....++.|+++++|++|+|||+|...
T Consensus 42 ~~G~~~~~~~g~l~v~~~~--~~~~~d~~---~g~~~~~~~~~~----------~~~~~~~~ND~~vd~~G~ly~t~~~~ 106 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSG--GIAVVDPD---TGKVTVLADLPD----------GGVPFNRPNDVAVDPDGNLYVTDSGG 106 (246)
T ss_dssp EEEEEEECTTSEEEEEETT--CEEEEETT---TTEEEEEEEEET----------TCSCTEEEEEEEE-TTS-EEEEEECC
T ss_pred CceEEEEccCCEEEEEEcC--ceEEEecC---CCcEEEEeeccC----------CCcccCCCceEEEcCCCCEEEEecCC
Confidence 9999999 79999999975 44555766 366666654311 11257899999999999999999875
Q ss_pred --------CeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce-
Q 010579 164 --------MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC- 233 (507)
Q Consensus 164 --------~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~- 233 (507)
.+|.+++.++ +..+.. .+..|+||++..+...|||+|+.+++|++++++....
T Consensus 107 ~~~~~~~~g~v~~~~~~~~~~~~~~-----------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 107 GGASGIDPGSVYRIDPDGKVTVVAD-----------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp BCTTCGGSEEEEEEETTSEEEEEEE-----------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred CccccccccceEEECCCCeEEEEec-----------------CcccccceEECCcchheeecccccceeEEEeccccccc
Confidence 5689999877 444421 3668999998666667999999999999999864332
Q ss_pred ------e--eCCCCCccceEEEEec
Q 010579 234 ------S--DNYDDTFHLGIFVLVA 250 (507)
Q Consensus 234 ------~--~~~~~G~p~gIa~~~~ 250 (507)
. .....|.|.|++++..
T Consensus 170 ~~~~~~~~~~~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 170 LSNRRVFIDFPGGPGYPDGLAVDSD 194 (246)
T ss_dssp EEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred eeeeeeEEEcCCCCcCCCcceEcCC
Confidence 1 1233357999999874
No 7
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=3.9e-07 Score=94.06 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=86.1
Q ss_pred CCCeeEEEEcCCCcEEEEeCC-----------CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEE
Q 010579 82 GMEPFSVAVSPSGELLVLDSE-----------NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAV 150 (507)
Q Consensus 82 ~~~P~gIaVd~dG~LYVaDs~-----------n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaV 150 (507)
.+.|+++.++++|.+||.|.. .++|+++++. +....+... .+..|+|||+
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~----g~~~~l~~~---------------~~~~~NGla~ 170 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD----GGVVRLLDD---------------DLTIPNGLAF 170 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC----CCEEEeecC---------------cEEecCceEE
Confidence 379999999999999999988 1578888875 333332211 2678999999
Q ss_pred cCCC-CEEEEeCCCCeEEEEcCCCcEEEecCcccC-CCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCC-eEEEEE
Q 010579 151 DDRG-NIYIADTMNMAIRKISDTGVTTIAGGKWSR-GVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ-AIREIQ 227 (507)
Q Consensus 151 d~dG-nIYVADs~N~rIrk~d~~GVstIaGG~~g~-~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~-rIr~I~ 227 (507)
++|| .+|++|+..++|.+++-+-...-.++.... -... .=..|-|++ +|.+|+||++-..++ +|.+++
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~--------~~G~PDG~~-vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE--------EPGLPDGMA-VDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC--------CCCCCCceE-EeCCCCEEEecccCCceEEEEC
Confidence 9999 599999999999999854200000111000 0000 013678887 699999997666554 999999
Q ss_pred CCCCcee
Q 010579 228 LHDDDCS 234 (507)
Q Consensus 228 l~~~~~~ 234 (507)
+++....
T Consensus 242 pdG~l~~ 248 (307)
T COG3386 242 PDGKLLG 248 (307)
T ss_pred CCCcEEE
Confidence 9865443
No 8
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=1.2e-06 Score=90.36 Aligned_cols=138 Identities=16% Similarity=0.221 Sum_probs=97.9
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
.+.++.++..|.|++++.+- ++++.+ .+.. +.++-.. + ..+++.|+++.++++|.|||.|..
T Consensus 68 ~~~~~~~d~~g~Lv~~~~g~---~~~~~~---~~~~~t~~~~~~-------~----~~~~~r~ND~~v~pdG~~wfgt~~ 130 (307)
T COG3386 68 FSSGALIDAGGRLIACEHGV---RLLDPD---TGGKITLLAEPE-------D----GLPLNRPNDGVVDPDGRIWFGDMG 130 (307)
T ss_pred cccceeecCCCeEEEEcccc---EEEecc---CCceeEEecccc-------C----CCCcCCCCceeEcCCCCEEEeCCC
Confidence 36788899999999998654 333322 1333 4444332 1 235789999999999999999987
Q ss_pred C-----------CeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 163 N-----------MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 163 N-----------~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
+ .+|+++++.| +..+..+ .+..|+||++.+++..||++|+..++|++++.+.
T Consensus 131 ~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~----------------~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 131 YFDLGKSEERPTGSLYRVDPDGGVVRLLDD----------------DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred ccccCccccCCcceEEEEcCCCCEEEeecC----------------cEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 2 3588888655 4444321 2668999998766669999999999999999873
Q ss_pred ---Cc-----ee-eCCCCCccceEEEEecceeE
Q 010579 231 ---DD-----CS-DNYDDTFHLGIFVLVAAAFF 254 (507)
Q Consensus 231 ---~~-----~~-~~~~~G~p~gIa~~~~a~~~ 254 (507)
.. +. .....|.|.|++++.++.++
T Consensus 195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw 227 (307)
T COG3386 195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLW 227 (307)
T ss_pred ccCccCCcceEEEccCCCCCCCceEEeCCCCEE
Confidence 11 11 12356899999999987766
No 9
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=3e-06 Score=89.72 Aligned_cols=141 Identities=21% Similarity=0.323 Sum_probs=100.8
Q ss_pred CCeeEEEEcCCC-cEEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE
Q 010579 83 MEPFSVAVSPSG-ELLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI 158 (507)
Q Consensus 83 ~~P~gIaVd~dG-~LYVaDs--~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV 158 (507)
..|.+++++++| .+||+|. .+++|.+|+.... .+... .. .| ..|.+++++++|+ +||
T Consensus 116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~~~~--~~-------vG-------~~P~~~a~~p~g~~vyv 176 (381)
T COG3391 116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KVTAT--IP-------VG-------NTPTGVAVDPDGNKVYV 176 (381)
T ss_pred cCCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eEEEE--Ee-------cC-------CCcceEEECCCCCeEEE
Confidence 379999999987 7999999 4799999998732 22111 11 11 1689999999999 999
Q ss_pred EeCCCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCC--CeEEEEECCCCceeeC
Q 010579 159 ADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN--QAIREIQLHDDDCSDN 236 (507)
Q Consensus 159 ADs~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn--~rIr~I~l~~~~~~~~ 236 (507)
+|..+++|.+|+..+...+- +.. ......+..|.++++.++...+||++..+ +.|.+++.........
T Consensus 177 ~~~~~~~v~vi~~~~~~v~~-~~~---------~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 177 TNSDDNTVSVIDTSGNSVVR-GSV---------GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred EecCCCeEEEEeCCCcceec-ccc---------ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 99999999999988754442 110 01234567899998644445599999988 7999999988776553
Q ss_pred --CCCC-ccceEEEEecce
Q 010579 237 --YDDT-FHLGIFVLVAAA 252 (507)
Q Consensus 237 --~~~G-~p~gIa~~~~a~ 252 (507)
.... .|.+++..-...
T Consensus 247 ~~~~~~~~~~~v~~~p~g~ 265 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGK 265 (381)
T ss_pred ccccccCCCCceeECCCCC
Confidence 1222 467777766544
No 10
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.52 E-value=1.1e-07 Score=63.72 Aligned_cols=28 Identities=46% Similarity=0.794 Sum_probs=26.6
Q ss_pred CCCcceEEEcCCCCEEEEeCCCCeEEEE
Q 010579 142 MNHPKGLAVDDRGNIYIADTMNMAIRKI 169 (507)
Q Consensus 142 fn~P~GIaVd~dGnIYVADs~N~rIrk~ 169 (507)
|+.|.|||++++|+|||||++|+||++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 6789999999999999999999999986
No 11
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.50 E-value=6e-06 Score=86.80 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=87.5
Q ss_pred CCCCeeEEEEcCCCcEEEEeCCC------------CeEEEEeCCCC--CCCccEEEecCCCCccccCCCCcccccCCCcc
Q 010579 81 FGMEPFSVAVSPSGELLVLDSEN------------SNIYKISTSLS--PYSRPKLVAGSPEGYYGHVDGRPRGARMNHPK 146 (507)
Q Consensus 81 ~~~~P~gIaVd~dG~LYVaDs~n------------~rI~ki~~~g~--~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~ 146 (507)
...+|.+|++|++|+|||++..+ +||+++..... ...+.++++. .++.|.
T Consensus 12 ~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~----------------~l~~p~ 75 (367)
T TIGR02604 12 LLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE----------------ELSMVT 75 (367)
T ss_pred ccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec----------------CCCCcc
Confidence 35689999999999999998532 48888865310 1112234432 267899
Q ss_pred eEEEcCCCCEEEEeCCCCeEEEE-cCCC-------cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC
Q 010579 147 GLAVDDRGNIYIADTMNMAIRKI-SDTG-------VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR 218 (507)
Q Consensus 147 GIaVd~dGnIYVADs~N~rIrk~-d~~G-------VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~ 218 (507)
||++.++| |||++. .+|.++ +.++ ..+++.+-.. .+ ......+++++ .+.+|.|||++.
T Consensus 76 Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~-----~~----~~~~~~~~~l~-~gpDG~LYv~~G 142 (367)
T TIGR02604 76 GLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGG-----QI----NNHHHSLNSLA-WGPDGWLYFNHG 142 (367)
T ss_pred ceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCC-----CC----CcccccccCce-ECCCCCEEEecc
Confidence 99999999 999984 458877 4322 2334322100 00 00123577887 588999999887
Q ss_pred CC-------------------CeEEEEECCCCceee-CCCCCccceEEEEe
Q 010579 219 GN-------------------QAIREIQLHDDDCSD-NYDDTFHLGIFVLV 249 (507)
Q Consensus 219 gn-------------------~rIr~I~l~~~~~~~-~~~~G~p~gIa~~~ 249 (507)
.+ +.|.++++++..... ..+.-.|.|+++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~ 193 (367)
T TIGR02604 143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS 193 (367)
T ss_pred cCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC
Confidence 32 568888887755433 22223466777654
No 12
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.44 E-value=3.2e-06 Score=85.10 Aligned_cols=133 Identities=20% Similarity=0.209 Sum_probs=96.5
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEe-cCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 161 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~va-G~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs 161 (507)
..|..|+.++||.+|+++.+.+.|-++++. +|++.++. |.+ .+|.+|.+++||+.||+|+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~---tGev~~ypLg~G----------------a~Phgiv~gpdg~~Witd~ 122 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPA---TGEVETYPLGSG----------------ASPHGIVVGPDGSAWITDT 122 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCC---CCceEEEecCCC----------------CCCceEEECCCCCeeEecC
Confidence 469999999999999999999999999998 57777664 221 4899999999999999999
Q ss_pred CCCeEEEEcCC-C-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee--CC
Q 010579 162 MNMAIRKISDT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD--NY 237 (507)
Q Consensus 162 ~N~rIrk~d~~-G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~--~~ 237 (507)
++ .|++++.. + ++++.= ......+.|+. ++.|+.|+||++.. ++.-=++++....... ..
T Consensus 123 ~~-aI~R~dpkt~evt~f~l----------p~~~a~~nlet----~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP 186 (353)
T COG4257 123 GL-AIGRLDPKTLEVTRFPL----------PLEHADANLET----AVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPAP 186 (353)
T ss_pred cc-eeEEecCcccceEEeec----------ccccCCCcccc----eeeCCCccEEEeec-cccceecCcccCceeeeccC
Confidence 98 99999963 3 666521 11222334444 23599999999976 3333355655555443 23
Q ss_pred CCCccceEEEEec
Q 010579 238 DDTFHLGIFVLVA 250 (507)
Q Consensus 238 ~~G~p~gIa~~~~ 250 (507)
..+.|.||++...
T Consensus 187 qG~gpyGi~atpd 199 (353)
T COG4257 187 QGGGPYGICATPD 199 (353)
T ss_pred CCCCCcceEECCC
Confidence 4456889987664
No 13
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=1.6e-05 Score=84.21 Aligned_cols=135 Identities=21% Similarity=0.226 Sum_probs=97.0
Q ss_pred CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC-CEEEEe
Q 010579 83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIAD 160 (507)
Q Consensus 83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG-nIYVAD 160 (507)
..|.++++.++|+ +|+.+..+++|.+|+... .++...+.. | ..|.+++++++| .+||+|
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---~~~~~~~~v-----G-----------~~P~~~~~~~~~~~vYV~n 134 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---NTVLGSIPV-----G-----------LGPVGLAVDPDGKYVYVAN 134 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcc---cceeeEeee-----c-----------cCCceEEECCCCCEEEEEe
Confidence 5799999999887 999999999999999542 222222211 1 279999999988 599999
Q ss_pred C--CCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCe-EEEEeCCCCeEEEEECCCCceee--
Q 010579 161 T--MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS-LLVIDRGNQAIREIQLHDDDCSD-- 235 (507)
Q Consensus 161 s--~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~-LyVaD~gn~rIr~I~l~~~~~~~-- 235 (507)
. .++.|.+||...-+.++....| ..|.++++ +++|. +||+|..+++|..|+..+.....
T Consensus 135 ~~~~~~~vsvid~~t~~~~~~~~vG---------------~~P~~~a~-~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~ 198 (381)
T COG3391 135 AGNGNNTVSVIDAATNKVTATIPVG---------------NTPTGVAV-DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS 198 (381)
T ss_pred cccCCceEEEEeCCCCeEEEEEecC---------------CCcceEEE-CCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence 9 5799999997763333221111 15788885 55555 99999999999999988776552
Q ss_pred ----CCCCCccceEEEEecce
Q 010579 236 ----NYDDTFHLGIFVLVAAA 252 (507)
Q Consensus 236 ----~~~~G~p~gIa~~~~a~ 252 (507)
......|.++++..++.
T Consensus 199 ~~~~~~~~~~P~~i~v~~~g~ 219 (381)
T COG3391 199 VGSLVGVGTGPAGIAVDPDGN 219 (381)
T ss_pred cccccccCCCCceEEECCCCC
Confidence 22233577888866544
No 14
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.32 E-value=3.4e-05 Score=77.85 Aligned_cols=165 Identities=15% Similarity=0.185 Sum_probs=99.7
Q ss_pred CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEe----------------cCC-------CCccccCCCCc-
Q 010579 82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVA----------------GSP-------EGYYGHVDGRP- 137 (507)
Q Consensus 82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~va----------------G~~-------~G~~G~~dG~~- 137 (507)
+..|++|.++|||..||+|.++ .|.|++.... .++.+- +.+ .|..|-.|-.-
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~---evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~ 178 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL---EVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARN 178 (353)
T ss_pred CCCCceEEECCCCCeeEecCcc-eeEEecCccc---ceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccC
Confidence 4589999999999999999988 9999998522 222221 000 11112111000
Q ss_pred -----ccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcC-CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCC
Q 010579 138 -----RGARMNHPKGLAVDDRGNIYIADTMNMAIRKISD-TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSS 210 (507)
Q Consensus 138 -----~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~-~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~ 210 (507)
..-+=..|.|||+.+||.+|++....+.|-+||+ ++ -..+.- -++.-+.-..| -+|+-
T Consensus 179 ~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~--------------P~~~~~gsRri-wsdpi 243 (353)
T COG4257 179 VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ--------------PNALKAGSRRI-WSDPI 243 (353)
T ss_pred ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecC--------------CCccccccccc-ccCcc
Confidence 0012246889999999999999999999999995 33 222210 00000111233 36889
Q ss_pred CeEEEEeCCCCeEEEEECCCCceeeC---CCCCccceEEEEe-cceeEEehhHHHhccc
Q 010579 211 CSLLVIDRGNQAIREIQLHDDDCSDN---YDDTFHLGIFVLV-AAAFFGYMLALLQRRV 265 (507)
Q Consensus 211 G~LyVaD~gn~rIr~I~l~~~~~~~~---~~~G~p~gIa~~~-~a~~~gy~~~~lq~~~ 265 (507)
|.+++++.+++++.+|++........ ...-.|..+-++. +-+++-+..+-...||
T Consensus 244 g~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rf 302 (353)
T COG4257 244 GRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRF 302 (353)
T ss_pred CcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeec
Confidence 99999999999999999887654332 2223455665554 2344434444333444
No 15
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.30 E-value=5.4e-06 Score=86.78 Aligned_cols=140 Identities=14% Similarity=0.207 Sum_probs=102.1
Q ss_pred CCeeEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579 83 MEPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 161 (507)
Q Consensus 83 ~~P~gIaVd~dG-~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs 161 (507)
-+|-||+++..| +|||||.. --+.++++.+ +....++... +| ..|...+++.|+++|.||++|+
T Consensus 115 GRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g---~~a~~l~~~~-------~G----~~~kf~N~ldI~~~g~vyFTDS 179 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAY-LGLLKVGPEG---GLAELLADEA-------EG----KPFKFLNDLDIDPEGVVYFTDS 179 (376)
T ss_pred CCcceEEeccCCCeEEEEecc-eeeEEECCCC---Ccceeccccc-------cC----eeeeecCceeEcCCCeEEEecc
Confidence 389999999865 99999976 5788999884 3333343332 33 3577788999999999999998
Q ss_pred CC-----------------CeEEEEcCCC-c-EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCe
Q 010579 162 MN-----------------MAIRKISDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 222 (507)
Q Consensus 162 ~N-----------------~rIrk~d~~G-V-stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~r 222 (507)
.. +|+.++|+.. + +++ -..|..|+||++..+...|+++.+...|
T Consensus 180 Ssk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VL-----------------ld~L~F~NGlaLS~d~sfvl~~Et~~~r 242 (376)
T KOG1520|consen 180 SSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVL-----------------LDGLYFPNGLALSPDGSFVLVAETTTAR 242 (376)
T ss_pred ccccchhheEEeeecCCCccceEEecCcccchhhh-----------------hhcccccccccCCCCCCEEEEEeeccce
Confidence 53 3455555333 1 222 2347889999987777789999999999
Q ss_pred EEEEECCCCceee-----CCCCCccceEEEEecceeE
Q 010579 223 IREIQLHDDDCSD-----NYDDTFHLGIFVLVAAAFF 254 (507)
Q Consensus 223 Ir~I~l~~~~~~~-----~~~~G~p~gIa~~~~a~~~ 254 (507)
|+++-+.+....+ ..-.|+|..|-....+.|+
T Consensus 243 i~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fW 279 (376)
T KOG1520|consen 243 IKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFW 279 (376)
T ss_pred eeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEE
Confidence 9999999876632 3467889988887655454
No 16
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.29 E-value=6e-05 Score=78.45 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=84.0
Q ss_pred CCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEE---ecCCCCccccCCCCcccccCCCcceEEEcCCCC-
Q 010579 81 FGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLV---AGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN- 155 (507)
Q Consensus 81 ~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~v---aG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn- 155 (507)
.+..|..++++++|. +||++..++.|..++.+.. .+.+..+ .-.+.+. .+ -+.|.+|++++||+
T Consensus 190 ~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~~~~----~~------~~~~~~i~ispdg~~ 258 (345)
T PF10282_consen 190 PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTISTLPEGF----TG------ENAPAEIAISPDGRF 258 (345)
T ss_dssp TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESCETTS----CS------SSSEEEEEE-TTSSE
T ss_pred cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeeeccccc----cc------cCCceeEEEecCCCE
Confidence 346799999999985 9999999999999876521 1333322 2111111 11 24899999999998
Q ss_pred EEEEeCCCCeEEEEcC---CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579 156 IYIADTMNMAIRKISD---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH 229 (507)
Q Consensus 156 IYVADs~N~rIrk~d~---~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~ 229 (507)
|||+..+.+.|.+|+- +| ++.+..-.. .-..|.++++.++...|||++...+.|..|+.+
T Consensus 259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--------------~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPT--------------GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEECTTTEEEEEEECTTTTTEEEEEEEEE--------------SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeccCCEEEEEEEecCCCceEEEEEEeC--------------CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 9999999999888773 34 443321100 112599999766666799999999999988764
No 17
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.29 E-value=3.7e-05 Score=80.83 Aligned_cols=116 Identities=14% Similarity=0.172 Sum_probs=77.5
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEe-CCC--CCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKIS-TSL--SPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA 159 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~-~~g--~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA 159 (507)
..|.+|++.++| |||++. .+|+++. .++ ...+..++++...... +. .....++++++++||.|||+
T Consensus 72 ~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~----~~----~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQ----IN----NHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred CCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCC----CC----cccccccCceECCCCCEEEe
Confidence 479999999998 999974 5798884 332 1122444444221100 00 01346889999999999999
Q ss_pred eCCC-------------------CeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC
Q 010579 160 DTMN-------------------MAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR 218 (507)
Q Consensus 160 Ds~N-------------------~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~ 218 (507)
+..+ .+|.+++++| +..++. .+.+|+++++ +.+|.||++|.
T Consensus 141 ~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----------------G~rnp~Gl~~-d~~G~l~~tdn 202 (367)
T TIGR02604 141 HGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----------------GFQNPYGHSV-DSWGDVFFCDN 202 (367)
T ss_pred cccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----------------CcCCCccceE-CCCCCEEEEcc
Confidence 8832 4577888766 444432 2678999995 77999999998
Q ss_pred CCCeEEEEE
Q 010579 219 GNQAIREIQ 227 (507)
Q Consensus 219 gn~rIr~I~ 227 (507)
.++...++.
T Consensus 203 ~~~~~~~i~ 211 (367)
T TIGR02604 203 DDPPLCRVT 211 (367)
T ss_pred CCCceeEEc
Confidence 766555443
No 18
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.25 E-value=8e-05 Score=77.53 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=94.1
Q ss_pred CCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579 82 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA 159 (507)
Q Consensus 82 ~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA 159 (507)
..+|+.+.++|||. |||+|.+.++|++++.+... +.+...... .-.. -..|+.|+++++|. +||+
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~-~~l~~~~~~-~~~~-----------G~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT-GKLTPVDSI-KVPP-----------GSGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS--TEEEEEEE-ECST-----------TSSEEEEEE-TTSSEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC-ceEEEeecc-cccc-----------CCCCcEEEEcCCcCEEEEe
Confidence 46899999999986 99999999999999876321 122211100 0011 14799999999987 9999
Q ss_pred eCCCCeEEEEcC---CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC--ce
Q 010579 160 DTMNMAIRKISD---TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD--DC 233 (507)
Q Consensus 160 Ds~N~rIrk~d~---~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~--~~ 233 (507)
...++.|.+|+- +| ++.+..-... . .+ ...-+.|.+|++.++...|||++++.+.|..|+++.. ..
T Consensus 210 ~e~s~~v~v~~~~~~~g~~~~~~~~~~~--~---~~---~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l 281 (345)
T PF10282_consen 210 NELSNTVSVFDYDPSDGSLTEIQTISTL--P---EG---FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL 281 (345)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEEESC--E---TT---SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE
T ss_pred cCCCCcEEEEeecccCCceeEEEEeeec--c---cc---ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce
Confidence 999999998883 44 3222210000 0 00 0112478899976666679999999999999998543 22
Q ss_pred ee---CC-CCCccceEEEEecce
Q 010579 234 SD---NY-DDTFHLGIFVLVAAA 252 (507)
Q Consensus 234 ~~---~~-~~G~p~gIa~~~~a~ 252 (507)
.. .. ....|.++++.....
T Consensus 282 ~~~~~~~~~G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 282 TLVQTVPTGGKFPRHFAFSPDGR 304 (345)
T ss_dssp EEEEEEEESSSSEEEEEE-TTSS
T ss_pred EEEEEEeCCCCCccEEEEeCCCC
Confidence 11 22 233588888866543
No 19
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.20 E-value=0.00017 Score=73.78 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=90.0
Q ss_pred CCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579 82 GMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA 159 (507)
Q Consensus 82 ~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA 159 (507)
+..|..++++++|. |||++...+.|..++.+.. .+.+..+.-.. .......+ -..|.+|+++++|+ |||+
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~-~~p~~~~~------~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLD-MMPADFSD------TRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEe-cCCCcCCC------CccceeEEECCCCCEEEEe
Confidence 34699999999986 8899988899988876511 12222211000 00000001 13577899999997 9999
Q ss_pred eCCCCeEEEEc--CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC--Ccee
Q 010579 160 DTMNMAIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD--DDCS 234 (507)
Q Consensus 160 Ds~N~rIrk~d--~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~--~~~~ 234 (507)
+...+.|.+|+ .++ ..++.+... .-..|.++++.++...|||++.+++.|..++.+. +...
T Consensus 246 ~~~~~~I~v~~i~~~~~~~~~~~~~~--------------~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~ 311 (330)
T PRK11028 246 DRTASLISVFSVSEDGSVLSFEGHQP--------------TETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLT 311 (330)
T ss_pred cCCCCeEEEEEEeCCCCeEEEeEEEe--------------ccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence 98888888876 344 323322100 0136888887666668999999999999987653 2222
Q ss_pred e---CCCCCccceEEEE
Q 010579 235 D---NYDDTFHLGIFVL 248 (507)
Q Consensus 235 ~---~~~~G~p~gIa~~ 248 (507)
. ......|.+|+++
T Consensus 312 ~~~~~~~g~~P~~~~~~ 328 (330)
T PRK11028 312 ELGRYAVGQGPMWVSVL 328 (330)
T ss_pred EccccccCCCceEEEEE
Confidence 2 1223467787773
No 20
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.16 E-value=3.1e-06 Score=56.77 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=25.5
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEE
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKI 109 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki 109 (507)
..|.||+++++|+|||+|++||||++|
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 479999999999999999999999986
No 21
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.09 E-value=1.4e-05 Score=68.23 Aligned_cols=67 Identities=16% Similarity=0.298 Sum_probs=52.5
Q ss_pred EEEEcCC-CcEEEEeCCC-----------------CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceE
Q 010579 87 SVAVSPS-GELLVLDSEN-----------------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGL 148 (507)
Q Consensus 87 gIaVd~d-G~LYVaDs~n-----------------~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GI 148 (507)
+|+|+++ |.||++|+.. +|+.++++. +++..+++.+ |..|+||
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~---t~~~~vl~~~----------------L~fpNGV 62 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPS---TKETTVLLDG----------------LYFPNGV 62 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETT---TTEEEEEEEE----------------ESSEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECC---CCeEEEehhC----------------CCccCeE
Confidence 7899997 9999999753 899999998 4666676643 7899999
Q ss_pred EEcCCCC-EEEEeCCCCeEEEEcCC
Q 010579 149 AVDDRGN-IYIADTMNMAIRKISDT 172 (507)
Q Consensus 149 aVd~dGn-IYVADs~N~rIrk~d~~ 172 (507)
++++|+. |+||++...||.++--.
T Consensus 63 als~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 63 ALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred EEcCCCCEEEEEeccCceEEEEEEe
Confidence 9999998 99999999999997543
No 22
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.99 E-value=0.00065 Score=69.51 Aligned_cols=121 Identities=10% Similarity=0.077 Sum_probs=81.0
Q ss_pred CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEe
Q 010579 83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD 160 (507)
Q Consensus 83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVAD 160 (507)
..|..|+++++|+ ||++....++|..++.+. .+.+....... . ....|.+++++++|+ +||++
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~--~g~~~~~~~~~-------~------~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDK--DGIPVAPIQII-------E------GLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECC--CCCCCCceeec-------c------CCCcccEeEeCCCCCEEEEee
Confidence 4799999999886 888888788988887641 12111111100 0 124689999999986 88999
Q ss_pred CCCCeEEEEcC--CC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579 161 TMNMAIRKISD--TG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH 229 (507)
Q Consensus 161 s~N~rIrk~d~--~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~ 229 (507)
.+.++|.+++. .| +........ ..+ .-..|.++++.++...|||++...+.|..++++
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~-------~~~----~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEV-------TTV----EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCce-------ecC----CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 99999999884 33 211000000 000 013588898766667799999999999999886
No 23
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.98 E-value=8.7e-05 Score=83.29 Aligned_cols=119 Identities=20% Similarity=0.171 Sum_probs=90.2
Q ss_pred CCCCCeeEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEE
Q 010579 80 KFGMEPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIY 157 (507)
Q Consensus 80 ~~~~~P~gIaVd~d-G~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIY 157 (507)
..+.+|.|||||.. -++|.+|+.+.+|-+-.++|++ -+++.- ..|-+|++|++|+ .|+||
T Consensus 1065 ~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~---rkvLf~---------------tdLVNPR~iv~D~~rgnLY 1126 (1289)
T KOG1214|consen 1065 SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE---RKVLFY---------------TDLVNPRAIVVDPIRGNLY 1126 (1289)
T ss_pred ccCCCccceeeeeccceeeeeccccchhheeecCCce---eeEEEe---------------ecccCcceEEeecccCcee
Confidence 34579999999984 4799999999999999888543 112211 2367899999999 78999
Q ss_pred EEeCC--CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579 158 IADTM--NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 232 (507)
Q Consensus 158 VADs~--N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~ 232 (507)
-+|.. |-.|-..+.+| -.++. +.-+..|+|+.+++-...|--+|.+++|+..+.+++..
T Consensus 1127 wtDWnRenPkIets~mDG~NrRili----------------n~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~g 1189 (1289)
T KOG1214|consen 1127 WTDWNRENPKIETSSMDGENRRILI----------------NTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTG 1189 (1289)
T ss_pred eccccccCCcceeeccCCccceEEe----------------ecccCCCCCceeCcccceeeEEecCCcceeEecCCCCc
Confidence 99986 66788888777 22222 22355799999877777888899999999999887643
No 24
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.88 E-value=5.4e-05 Score=64.60 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=50.9
Q ss_pred ceEEEcCC-CCEEEEeCC-----------------CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEE
Q 010579 146 KGLAVDDR-GNIYIADTM-----------------NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV 205 (507)
Q Consensus 146 ~GIaVd~d-GnIYVADs~-----------------N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa 205 (507)
++|+|+++ |.||++|+. ++|+.++|+.. +++++. .|..|+||+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-----------------~L~fpNGVa 63 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-----------------GLYFPNGVA 63 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-----------------EESSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-----------------CCCccCeEE
Confidence 47999998 999999993 56899999766 555643 267899999
Q ss_pred EEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 206 YVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 206 ~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
+..+...|+|+.+...||.++-+.+
T Consensus 64 ls~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 64 LSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred EcCCCCEEEEEeccCceEEEEEEeC
Confidence 7666667999999999999998865
No 25
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.88 E-value=7.5e-05 Score=83.78 Aligned_cols=134 Identities=18% Similarity=0.139 Sum_probs=104.5
Q ss_pred CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC-CEEEEe
Q 010579 83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIAD 160 (507)
Q Consensus 83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG-nIYVAD 160 (507)
.-|.||.+|- +-.+|.+|...+.|.+-+++| ++.++++.+ .|..|.|||||--+ |||-+|
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G---~Ep~ti~n~---------------~L~SPEGiAVDh~~Rn~ywtD 1086 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEG---AEPETIVNS---------------GLISPEGIAVDHIRRNMYWTD 1086 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccC---CCCceeecc---------------cCCCccceeeeeccceeeeec
Confidence 3578899986 556999999999999999885 455666544 37899999999754 699999
Q ss_pred CCCCeEEEEcCCC-c-EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC--CCCeEEEEECCCCc--ee
Q 010579 161 TMNMAIRKISDTG-V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR--GNQAIREIQLHDDD--CS 234 (507)
Q Consensus 161 s~N~rIrk~d~~G-V-stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~--gn~rIr~I~l~~~~--~~ 234 (507)
+.+.+|-+-.-+| . ..+. ...|.+|.+|+++.-.++||-+|. .|-.|-..++++.. ..
T Consensus 1087 S~lD~IevA~LdG~~rkvLf----------------~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRil 1150 (1289)
T KOG1214|consen 1087 SVLDKIEVALLDGSERKVLF----------------YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRIL 1150 (1289)
T ss_pred cccchhheeecCCceeeEEE----------------eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEE
Confidence 9999998888777 2 2221 123779999998778999999995 67789899888866 34
Q ss_pred eCCCCCccceEEEEec
Q 010579 235 DNYDDTFHLGIFVLVA 250 (507)
Q Consensus 235 ~~~~~G~p~gIa~~~~ 250 (507)
.+...|+|+|+.++.-
T Consensus 1151 in~DigLPNGLtfdpf 1166 (1289)
T KOG1214|consen 1151 INTDIGLPNGLTFDPF 1166 (1289)
T ss_pred eecccCCCCCceeCcc
Confidence 4677899999887653
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.66 E-value=0.011 Score=57.62 Aligned_cols=135 Identities=13% Similarity=0.177 Sum_probs=86.3
Q ss_pred CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579 83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA 159 (507)
Q Consensus 83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA 159 (507)
..|..++++++|. ||++....++|+.++... +.. ..+-... .+. . ..-..|.+++++++|+ +|++
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~---~~~~~~~~~~~---~~~-----~-~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVAT---RKVIKKITFEI---PGV-----H-PEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCc---ceeeeeeeecc---ccc-----c-cccCCccceEECCCCCEEEEE
Confidence 3678899999987 556655568999999863 222 1111110 000 0 0112578999999998 5888
Q ss_pred eCCCCeEEEEcCCC--cE-EEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC
Q 010579 160 DTMNMAIRKISDTG--VT-TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN 236 (507)
Q Consensus 160 Ds~N~rIrk~d~~G--Vs-tIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~ 236 (507)
...+++|.++|... +. .+..+ ..+.++++.++...||++....+.|+.+++.+..+...
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~~~------------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLLVG------------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEeC------------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 88888999999543 22 22110 13567776555556777777788999999998876442
Q ss_pred -CCCCccceEEE
Q 010579 237 -YDDTFHLGIFV 247 (507)
Q Consensus 237 -~~~G~p~gIa~ 247 (507)
.....|.+|++
T Consensus 287 ~~~~~~~~~~~~ 298 (300)
T TIGR03866 287 IKVGRLPWGVVV 298 (300)
T ss_pred EEcccccceeEe
Confidence 23346778775
No 27
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.54 E-value=0.01 Score=62.85 Aligned_cols=172 Identities=18% Similarity=0.192 Sum_probs=97.1
Q ss_pred ceEeEEEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCC
Q 010579 34 GIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTS 112 (507)
Q Consensus 34 G~l~~va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~ 112 (507)
+.+..++..+.+.|+.+|..+.++. ..+..|.. -+.++++++||+ +||+.. .+.|.+||+.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~-----~~i~~~~~------------~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~ 66 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVV-----ARIPTGGA------------PHAGLKFSPDGRYLYVANR-DGTVSVIDLA 66 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEE-----EEEE-STT------------EEEEEE-TT-SSEEEEEET-TSEEEEEETT
T ss_pred ccEEEEEecCCCEEEEEECCCCeEE-----EEEcCCCC------------ceeEEEecCCCCEEEEEcC-CCeEEEEECC
Confidence 3455577888899999999887765 22222221 245678899886 999975 5799999987
Q ss_pred CCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcCCC---cEEEecCcccCCCC
Q 010579 113 LSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVG 187 (507)
Q Consensus 113 g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G 187 (507)
. .+ +..+.-. ..|.||++++||+ +||+....+.|.++|... +.+|..+....
T Consensus 67 ~---~~~v~~i~~G-----------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~--- 123 (369)
T PF02239_consen 67 T---GKVVATIKVG-----------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV--- 123 (369)
T ss_dssp S---SSEEEEEE-S-----------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---
T ss_pred c---ccEEEEEecC-----------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc---
Confidence 3 33 2222211 2689999999998 999999999999999655 55664332110
Q ss_pred CCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc-e--eeCCCCCccceEEEEeccee
Q 010579 188 HVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD-C--SDNYDDTFHLGIFVLVAAAF 253 (507)
Q Consensus 188 ~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~-~--~~~~~~G~p~gIa~~~~a~~ 253 (507)
++ .-....+|...+.....+|+-...+.|+.++..... . ......-+|.+..+....-+
T Consensus 124 --~~-----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 124 --DG-----PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp --TT-----S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred --cc-----cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 00 112334554333333344455667788888755432 1 11222335666666655433
No 28
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.39 E-value=0.046 Score=53.24 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=70.7
Q ss_pred CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579 84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT 161 (507)
Q Consensus 84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs 161 (507)
.|.+++++++|. ||++....+.|+.++... ++.....-. + ..|..++++++|+ +|++..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~-----~-----------~~~~~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLAT---GEVIGTLPS-----G-----------PDPELFALHPNGKILYIANE 92 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCC---CcEEEeccC-----C-----------CCccEEEECCCCCEEEEEcC
Confidence 467899999987 678888888999999762 322211100 0 1356789999987 778877
Q ss_pred CCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEE-EEeCCCCeEEEEECCCCce
Q 010579 162 MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLL-VIDRGNQAIREIQLHDDDC 233 (507)
Q Consensus 162 ~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~Ly-VaD~gn~rIr~I~l~~~~~ 233 (507)
..++|+.+|...-..+..-. . -..|.++++ ++++.++ ++......+..++..+..+
T Consensus 93 ~~~~l~~~d~~~~~~~~~~~----~-----------~~~~~~~~~-~~dg~~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 93 DDNLVTVIDIETRKVLAEIP----V-----------GVEPEGMAV-SPDGKIVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred CCCeEEEEECCCCeEEeEee----C-----------CCCcceEEE-CCCCCEEEEEecCCCeEEEEeCCCCeE
Confidence 67789999965422221000 0 013567775 5555544 4444445666777765544
No 29
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=97.38 E-value=0.0046 Score=65.18 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=70.2
Q ss_pred CCCcceEEEcCCC-CEEEEeCCCCeEEEEcCCC-cE-EEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC
Q 010579 142 MNHPKGLAVDDRG-NIYIADTMNMAIRKISDTG-VT-TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR 218 (507)
Q Consensus 142 fn~P~GIaVd~dG-nIYVADs~N~rIrk~d~~G-Vs-tIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~ 218 (507)
-..|.||+++..| +|||||..- -+.+++..| .. .++.- .+| ..+...+++. ++++|.||++|+
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~~--------~~G----~~~kf~N~ld-I~~~g~vyFTDS 179 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLADE--------AEG----KPFKFLNDLD-IDPEGVVYFTDS 179 (376)
T ss_pred cCCcceEEeccCCCeEEEEecce-eeEEECCCCCcceecccc--------ccC----eeeeecCcee-EcCCCeEEEecc
Confidence 3589999999987 899999864 578999766 43 33221 111 2344555666 356999999986
Q ss_pred C-----------------CCeEEEEECCCCcee-eCCCCCccceEEEEecceeEEe
Q 010579 219 G-----------------NQAIREIQLHDDDCS-DNYDDTFHLGIFVLVAAAFFGY 256 (507)
Q Consensus 219 g-----------------n~rIr~I~l~~~~~~-~~~~~G~p~gIa~~~~a~~~gy 256 (507)
. ++|+.++|+.+.... ....-.+|+|+|+.-+..|+..
T Consensus 180 Ssk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~ 235 (376)
T KOG1520|consen 180 SSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLV 235 (376)
T ss_pred ccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEE
Confidence 3 578888888776653 3566678999999877666543
No 30
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.013 Score=61.08 Aligned_cols=157 Identities=13% Similarity=0.190 Sum_probs=97.5
Q ss_pred cEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCcc---E
Q 010579 45 KWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRP---K 120 (507)
Q Consensus 45 ~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i---~ 120 (507)
+.|+..|+.+..+. ++.+.+|........--..+.-|.-|+|.|+|. .|+..--|++|-++.-+.. .+++ .
T Consensus 157 ~~l~v~DLG~Dri~----~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ 231 (346)
T COG2706 157 RYLVVPDLGTDRIF----LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQ 231 (346)
T ss_pred CEEEEeecCCceEE----EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEee
Confidence 46777777777655 355556654333322234557799999999987 6888888899888765532 2333 3
Q ss_pred EEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEE--cCC-C-cEEEecCcccCCCCCCCCCccC
Q 010579 121 LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKI--SDT-G-VTTIAGGKWSRGVGHVDGPSED 195 (507)
Q Consensus 121 ~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~--d~~-G-VstIaGG~~g~~~G~~dg~~~~ 195 (507)
++.-.++++.| -++-..|.+++||+ ||++|.+.+.|..| +.+ | +.++..-. .+
T Consensus 232 ~i~tlP~dF~g----------~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~------------te 289 (346)
T COG2706 232 TIDTLPEDFTG----------TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP------------TE 289 (346)
T ss_pred eeccCccccCC----------CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec------------cC
Confidence 34434444433 24556899999998 99999998877655 455 4 34432211 11
Q ss_pred ccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 196 AKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 196 a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
-..|.+..+.+....|+++....+.|.++..+.
T Consensus 290 --g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 290 --GQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred --CcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 124666665555566777766666666665544
No 31
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.23 E-value=0.0016 Score=65.59 Aligned_cols=76 Identities=24% Similarity=0.458 Sum_probs=46.3
Q ss_pred CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579 83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 161 (507)
Q Consensus 83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs 161 (507)
..|.+|+++| .|+|||....+++|..++.. |++.-..--..|..| ....+..|.|||+|++|+|||+.-
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~----G~~~~~~~L~~g~~g------l~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQ----GRVVSSLSLDRGFHG------LSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE-TT------EEEEEE-STTGGG-------SS---SEEEEEE-TT--EEEEET
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEECCC----CCEEEEEEeCCcccC------cccccCCccEEEECCCCCEEEEcC
Confidence 5799999999 78999999999999999987 444332222112222 223688999999999999999987
Q ss_pred CCCeEEEE
Q 010579 162 MNMAIRKI 169 (507)
Q Consensus 162 ~N~rIrk~ 169 (507)
.| +..+|
T Consensus 241 pN-lfy~f 247 (248)
T PF06977_consen 241 PN-LFYRF 247 (248)
T ss_dssp TT-EEEEE
T ss_pred Cc-eEEEe
Confidence 55 55554
No 32
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.22 E-value=0.007 Score=63.05 Aligned_cols=124 Identities=21% Similarity=0.250 Sum_probs=74.1
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCC----CCEE
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR----GNIY 157 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d----GnIY 157 (507)
..|.+|++.|||.|||++. .++|++++.+ +.. ..+..... ... .......||+++++ +.||
T Consensus 2 ~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~----g~~~~~v~~~~~-v~~--------~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAER-SGRIWVVDKD----GSLKTPVADLPE-VFA--------DGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SSEEEEEEETTSCEEEEET-TTEEEEEETT----TEECEEEEE-TT-TBT--------STTBSEEEEEE-TTCCCC-EEE
T ss_pred CCceEEEEeCCCcEEEEeC-CceEEEEeCC----CcCcceeccccc-ccc--------cccCCcccceeccccCCCCEEE
Confidence 4799999999999999998 8999999965 332 23332211 100 11346789999994 8899
Q ss_pred EEeCCC--------CeEEEEc--CCC-----cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEe-----
Q 010579 158 IADTMN--------MAIRKIS--DTG-----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID----- 217 (507)
Q Consensus 158 VADs~N--------~rIrk~d--~~G-----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD----- 217 (507)
|+-+.. .+|.++. .+. ..+|.-+... .....-.-..|+ .+++|.|||+-
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~----------~~~~~H~g~~l~-fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPD----------TSSGNHNGGGLA-FGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEEE-E-TTSEEEEEEB-TTT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCC----------CCCCCCCCcccc-CCCCCcEEEEeCCCCC
Confidence 987732 4666665 221 2233221110 001112234566 58899999982
Q ss_pred --------CCCCeEEEEECCCC
Q 010579 218 --------RGNQAIREIQLHDD 231 (507)
Q Consensus 218 --------~gn~rIr~I~l~~~ 231 (507)
...++|.+|++++.
T Consensus 137 ~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 137 DDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp GGGGCSTTSSTTEEEEEETTSS
T ss_pred cccccccccccceEEEecccCc
Confidence 23578999998775
No 33
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.07 E-value=0.046 Score=55.08 Aligned_cols=74 Identities=12% Similarity=0.257 Sum_probs=45.7
Q ss_pred cCCCcceEEEcC-CCCEEEEeCCCCeEEEEcCCC--cEEE--ecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEE
Q 010579 141 RMNHPKGLAVDD-RGNIYIADTMNMAIRKISDTG--VTTI--AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLV 215 (507)
Q Consensus 141 ~fn~P~GIaVd~-dGnIYVADs~N~rIrk~d~~G--VstI--aGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyV 215 (507)
.+..|.+|++|+ .|+|||-...+++|..+|.+| +..+ ..|..| ....+..|-||++ |++|+|||
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~g----------l~~~~~QpEGIa~-d~~G~LYI 237 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHG----------LSKDIPQPEGIAF-DPDGNLYI 237 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-----------SS---SEEEEEE--TT--EEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccC----------cccccCCccEEEE-CCCCCEEE
Confidence 467799999998 578999999999999999988 3333 222111 1235778999995 78999999
Q ss_pred EeCCCCeEEEE
Q 010579 216 IDRGNQAIREI 226 (507)
Q Consensus 216 aD~gn~rIr~I 226 (507)
+..- |+..+|
T Consensus 238 vsEp-Nlfy~f 247 (248)
T PF06977_consen 238 VSEP-NLFYRF 247 (248)
T ss_dssp EETT-TEEEEE
T ss_pred EcCC-ceEEEe
Confidence 9985 466665
No 34
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.76 E-value=0.038 Score=57.10 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=86.1
Q ss_pred eEEEEcC---CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE---
Q 010579 86 FSVAVSP---SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA--- 159 (507)
Q Consensus 86 ~gIaVd~---dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA--- 159 (507)
.|+|+.. ...||.+|..++||-+|+..- ..+ .+.|... |-. ..+. -.|.+|..- .|+|||+
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f---~~~-~~~g~F~------DP~-iPag-yAPFnIqni-g~~lyVtYA~ 207 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSF---RPP-PLPGSFI------DPA-LPAG-YAPFNVQNL-GGTLYVTYAQ 207 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCcc---ccc-cCCCCcc------CCC-CCCC-CCCcceEEE-CCeEEEEEEe
Confidence 3666653 236999999999999998652 212 2222221 100 0001 246777655 4789996
Q ss_pred -e---------CCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEc-----CCCeEEEEeCCCCe
Q 010579 160 -D---------TMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVG-----SSCSLLVIDRGNQA 222 (507)
Q Consensus 160 -D---------s~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd-----~~G~LyVaD~gn~r 222 (507)
| .+..-|-+||.+| +.+++.+ ..|+.|++|+..+ -.|.|+|-+-+.++
T Consensus 208 qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~---------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~ 272 (336)
T TIGR03118 208 QDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS---------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGT 272 (336)
T ss_pred cCCcccccccCCCcceEEEEcCCCcEEEEeccC---------------CcccCCceeeeChhhhCCCCCCeEEeecCCce
Confidence 2 2456788999888 5666532 3589999999643 34689999999999
Q ss_pred EEEEECCCCcee-e-CCCCCccceEEEEe
Q 010579 223 IREIQLHDDDCS-D-NYDDTFHLGIFVLV 249 (507)
Q Consensus 223 Ir~I~l~~~~~~-~-~~~~G~p~gIa~~~ 249 (507)
|-.|++...... . ....|.|.-|-.+.
T Consensus 273 InaFD~~sG~~~g~L~~~~G~pi~i~GLW 301 (336)
T TIGR03118 273 INAYDPQSGAQLGQLLDPDNHPVKVDGLW 301 (336)
T ss_pred eEEecCCCCceeeeecCCCCCeEEecCeE
Confidence 999998754422 2 34555555444444
No 35
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=96.75 E-value=0.11 Score=56.66 Aligned_cols=89 Identities=21% Similarity=0.319 Sum_probs=56.7
Q ss_pred CCeeeEEeecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcce
Q 010579 68 GGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKG 147 (507)
Q Consensus 68 ~G~~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~G 147 (507)
.++.++.+..| +..|++|++.|||+|||++...++|++++..+ +....+.+...-. .......+.|
T Consensus 18 ~~f~~~~va~G---L~~Pw~maflPDG~llVtER~~G~I~~v~~~~---~~~~~~~~l~~v~--------~~~ge~GLlg 83 (454)
T TIGR03606 18 ENFDKKVLLSG---LNKPWALLWGPDNQLWVTERATGKILRVNPET---GEVKVVFTLPEIV--------NDAQHNGLLG 83 (454)
T ss_pred CCcEEEEEECC---CCCceEEEEcCCCeEEEEEecCCEEEEEeCCC---CceeeeecCCcee--------ccCCCCceee
Confidence 34444444432 45899999999999999998779999998753 2223333322100 0012456789
Q ss_pred EEEcCCC-------CEEEEeC---------CCCeEEEEc
Q 010579 148 LAVDDRG-------NIYIADT---------MNMAIRKIS 170 (507)
Q Consensus 148 IaVd~dG-------nIYVADs---------~N~rIrk~d 170 (507)
||++|+- .|||+=+ ...+|.++.
T Consensus 84 lal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~ 122 (454)
T TIGR03606 84 LALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYT 122 (454)
T ss_pred EEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEE
Confidence 9998763 5999832 245777765
No 36
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.64 E-value=0.011 Score=58.96 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=55.7
Q ss_pred CeeEEEEcCCC-cEEEEeCCCCeEEEE--eCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEe
Q 010579 84 EPFSVAVSPSG-ELLVLDSENSNIYKI--STSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIAD 160 (507)
Q Consensus 84 ~P~gIaVd~dG-~LYVaDs~n~rI~ki--~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVAD 160 (507)
-|+||+.|.+- .+|+.|+.|..|.-+ +..++.......+...... ..-.=-.|.|+++|.+|+||||-
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~---------~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKS---------QPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccC---------CCcCCCCCCcceEccCCcEEEEE
Confidence 57899998754 599999999999444 4554433333333322100 00012358899999999999999
Q ss_pred CCCCeEEEEcC-CC
Q 010579 161 TMNMAIRKISD-TG 173 (507)
Q Consensus 161 s~N~rIrk~d~-~G 173 (507)
....+|.++|. .|
T Consensus 230 ~ng~~V~~~dp~tG 243 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTG 243 (310)
T ss_pred ecCcEEEEECCCCC
Confidence 99999999994 55
No 37
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.61 E-value=0.024 Score=62.89 Aligned_cols=95 Identities=24% Similarity=0.355 Sum_probs=59.3
Q ss_pred CCCCCCeeEEEEcC-CCcEEEEeCCCC-------------------eEEEEeCCCCC----CCccEE--EecCCCCcccc
Q 010579 79 SKFGMEPFSVAVSP-SGELLVLDSENS-------------------NIYKISTSLSP----YSRPKL--VAGSPEGYYGH 132 (507)
Q Consensus 79 ~~~~~~P~gIaVd~-dG~LYVaDs~n~-------------------rI~ki~~~g~~----~g~i~~--vaG~~~G~~G~ 132 (507)
...+..|.+|++++ +|.|||+.+.++ +|+++.+.+.- ..++.+ ++|........
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 34458999999999 689999987766 89999876431 112333 33332111111
Q ss_pred CCCCcccccCCCcceEEEcCCCCEEEE-eCCCCe--EEEEcCCC
Q 010579 133 VDGRPRGARMNHPKGLAVDDRGNIYIA-DTMNMA--IRKISDTG 173 (507)
Q Consensus 133 ~dG~~~~a~fn~P~GIaVd~dGnIYVA-Ds~N~r--Irk~d~~G 173 (507)
..+......|+.|-+|++|++|+|||+ |..++. |.-.+.+|
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G 469 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDG 469 (524)
T ss_pred ccCcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccC
Confidence 122234567999999999999999997 444332 33334444
No 38
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.60 E-value=0.023 Score=59.23 Aligned_cols=127 Identities=20% Similarity=0.284 Sum_probs=67.1
Q ss_pred CeeEEEEcCC----CcEEEEeCCC--------CeEEEEeCCCC--CCCccEEEe-cCCCCccccCCCCcccccCCCcceE
Q 010579 84 EPFSVAVSPS----GELLVLDSEN--------SNIYKISTSLS--PYSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGL 148 (507)
Q Consensus 84 ~P~gIaVd~d----G~LYVaDs~n--------~rI~ki~~~g~--~~g~i~~va-G~~~G~~G~~dG~~~~a~fn~P~GI 148 (507)
...+|+++|+ +.|||+-+.. .+|.++..+.. ..+...+++ +.+. . ......-.+|
T Consensus 50 gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~-~---------~~~~H~g~~l 119 (331)
T PF07995_consen 50 GLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPD-T---------SSGNHNGGGL 119 (331)
T ss_dssp SEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEE
T ss_pred CcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCC-C---------CCCCCCCccc
Confidence 5789999994 8899987743 57888876532 111122222 2111 0 0112344579
Q ss_pred EEcCCCCEEEEeCC-------------CCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEE
Q 010579 149 AVDDRGNIYIADTM-------------NMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLV 215 (507)
Q Consensus 149 aVd~dGnIYVADs~-------------N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyV 215 (507)
++++||.|||+=.. ...|.+|+.+|. +.......+....+...-...|.+|+++++.+..|.||+
T Consensus 120 ~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~--~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~ 197 (331)
T PF07995_consen 120 AFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS--IPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWA 197 (331)
T ss_dssp EE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS--B-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEE
T ss_pred cCCCCCcEEEEeCCCCCcccccccccccceEEEecccCc--CCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEE
Confidence 99999999997332 246777877661 111100000000011112234889999998655599999
Q ss_pred EeCCCCe
Q 010579 216 IDRGNQA 222 (507)
Q Consensus 216 aD~gn~r 222 (507)
+|.+...
T Consensus 198 ~d~G~~~ 204 (331)
T PF07995_consen 198 ADNGPDG 204 (331)
T ss_dssp EEE-SSS
T ss_pred EccCCCC
Confidence 9977643
No 39
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.50 E-value=0.072 Score=56.34 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=75.1
Q ss_pred CcEEEEeCC----CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC-------
Q 010579 94 GELLVLDSE----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT------- 161 (507)
Q Consensus 94 G~LYVaDs~----n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs------- 161 (507)
.++||.|.. .++|.+||.+. .++.-.+-.+ ..|.++ +++||. ||||.+
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~---~~v~g~i~~G----------------~~P~~~-~spDg~~lyva~~~~~R~~~ 72 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEA---GRVLGMTDGG----------------FLPNPV-VASDGSFFAHASTVYSRIAR 72 (352)
T ss_pred CEEEEECCcccccCceEEEEECCC---CEEEEEEEcc----------------CCCcee-ECCCCCEEEEEecccccccc
Confidence 369999987 38999999862 3322211111 368897 999987 999999
Q ss_pred --CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC-CCeEEEEECCCCceee
Q 010579 162 --MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSD 235 (507)
Q Consensus 162 --~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g-n~rIr~I~l~~~~~~~ 235 (507)
....|.+||... +..|.-+.. | .......|..+++.+++..|||++.. .+.|-+||+.......
T Consensus 73 G~~~d~V~v~D~~t~~~~~~i~~p~~---------p-~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 73 GKRTDYVEVIDPQTHLPIADIELPEG---------P-RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCCCEEEEEECccCcEEeEEccCCC---------c-hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 788999999665 333321110 0 11124467777765555679999966 8999999998866544
No 40
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.49 E-value=0.026 Score=57.85 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=86.8
Q ss_pred EeEEEecCCcEEEEEeCCCCeEE---ecCcceE-------eeCCeeeEEeecCCCCCCCeeEEEEcC---CC-cEEEEeC
Q 010579 36 VSNVVSALVKWLWSLKDSPKTAV---SSSSMIK-------FEGGYTVETVFEGSKFGMEPFSVAVSP---SG-ELLVLDS 101 (507)
Q Consensus 36 l~~va~ag~~~I~~~d~~t~~i~---aG~~~~~-------~~~G~~~~~~~~G~~~~~~P~gIaVd~---dG-~LYVaDs 101 (507)
+..+++++...|.++|..+++.. .+ .+.. ..+|... ... ..-.||+..+ +| .||+.--
T Consensus 79 ~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~p~~~~~~i~g~~~-~~~------dg~~gial~~~~~d~r~LYf~~l 150 (287)
T PF03022_consen 79 FAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPDPDAGPFTIGGESF-QWP------DGIFGIALSPISPDGRWLYFHPL 150 (287)
T ss_dssp EEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS-SSEEEEETTEEE-EET------TSEEEEEE-TTSTTS-EEEEEET
T ss_pred EEEEeCCCcCcEEEEEccCCcEEEEecC-CcceeccccceeccCceE-ecC------CCccccccCCCCCCccEEEEEeC
Confidence 44488888889999999888743 11 1000 0112111 111 1256788866 43 4999988
Q ss_pred CCCeEEEEeCCCCCCCccEEEe--cCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCCC------
Q 010579 102 ENSNIYKISTSLSPYSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG------ 173 (507)
Q Consensus 102 ~n~rI~ki~~~g~~~g~i~~va--G~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~G------ 173 (507)
...+++++...--.......-. ....-..|. +-..-.|+++|++|+||++|..+++|.+.++++
T Consensus 151 ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~--------k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~ 222 (287)
T PF03022_consen 151 SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGD--------KGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPEN 222 (287)
T ss_dssp T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----------SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCC
T ss_pred CCCcEEEEEHHHhhCccccccccccccceeccc--------cCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccc
Confidence 8889999974210000000000 000000010 012345999999999999999999999999876
Q ss_pred cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcC--CCeEEEEe
Q 010579 174 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS--SCSLLVID 217 (507)
Q Consensus 174 VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~--~G~LyVaD 217 (507)
+.+++-. ...|.+|.++. ++. +|.|||..
T Consensus 223 ~~~l~~d--------------~~~l~~pd~~~-i~~~~~g~L~v~s 253 (287)
T PF03022_consen 223 FEILAQD--------------PRTLQWPDGLK-IDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEEE---------------CC-GSSEEEEE-E-T--TS-EEEEE
T ss_pred hheeEEc--------------Cceeeccceee-eccccCceEEEEE
Confidence 4555421 12388999998 577 89999986
No 41
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.48 E-value=0.33 Score=51.43 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=49.5
Q ss_pred EEEcCCCC-EEEE-eCC--------CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eE
Q 010579 148 LAVDDRGN-IYIA-DTM--------NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SL 213 (507)
Q Consensus 148 IaVd~dGn-IYVA-Ds~--------N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~L 213 (507)
++++++|+ +||+ ... .+.|.+||... +..|.-| ..|.+|++..+.. .|
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG------------------~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG------------------HEIDSINVSQDAKPLL 314 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC------------------CceeeEEECCCCCeEE
Confidence 99998866 9994 322 26899999655 4444322 1678998766666 78
Q ss_pred EEEeCCCCeEEEEECCCCce
Q 010579 214 LVIDRGNQAIREIQLHDDDC 233 (507)
Q Consensus 214 yVaD~gn~rIr~I~l~~~~~ 233 (507)
|+++..++.|..||..+...
T Consensus 315 yvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EEeCCCCCcEEEEECcCCeE
Confidence 99998999999999876543
No 42
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.29 E-value=0.59 Score=47.60 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=71.6
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
.-.||++-.| .||..-..++..++++.+. ...+..+.-.+ ...|||.|. ..||++|. +
T Consensus 91 FgEGit~~~d-~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~~-----------------EGWGLt~dg-~~Li~SDG-S 148 (264)
T PF05096_consen 91 FGEGITILGD-KLYQLTWKEGTGFVYDPNT--LKKIGTFPYPG-----------------EGWGLTSDG-KRLIMSDG-S 148 (264)
T ss_dssp -EEEEEEETT-EEEEEESSSSEEEEEETTT--TEEEEEEE-SS-----------------S--EEEECS-SCEEEE-S-S
T ss_pred cceeEEEECC-EEEEEEecCCeEEEEcccc--ceEEEEEecCC-----------------cceEEEcCC-CEEEEECC-c
Confidence 4668888754 8999999999999999862 12222222111 345999763 46999996 7
Q ss_pred CeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579 164 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 235 (507)
Q Consensus 164 ~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~ 235 (507)
.+|+.+|+.. +.+|.-.. ++ ..+..=+.+-++ +|.||.-=...++|.+|++.++.|..
T Consensus 149 ~~L~~~dP~~f~~~~~i~V~~--------~g----~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 149 SRLYFLDPETFKEVRTIQVTD--------NG----RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp SEEEEE-TTT-SEEEEEE-EE--------TT----EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred cceEEECCcccceEEEEEEEE--------CC----EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 7999999765 33332111 11 012233455554 68899888889999999999887643
No 43
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.25 E-value=0.039 Score=55.17 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=57.6
Q ss_pred cCCCcceEEEcCCCC-EEEEeCCCCeEEEEc---CCC-c---EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCe
Q 010579 141 RMNHPKGLAVDDRGN-IYIADTMNMAIRKIS---DTG-V---TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCS 212 (507)
Q Consensus 141 ~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d---~~G-V---stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~ 212 (507)
++.-|+||+.|.+-. +|+.|+.|..|..++ ..| + ..|.--.... +.+ --.|.|++ +|.+|+
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~--------~~e--~~~PDGm~-ID~eG~ 224 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ--------PFE--SLEPDGMT-IDTEGN 224 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC--------CcC--CCCCCcce-EccCCc
Confidence 356789999998654 999999999996555 344 2 1221111000 001 12588988 589999
Q ss_pred EEEEeCCCCeEEEEECCCCcee
Q 010579 213 LLVIDRGNQAIREIQLHDDDCS 234 (507)
Q Consensus 213 LyVaD~gn~rIr~I~l~~~~~~ 234 (507)
|||+-..+++|.++++.++...
T Consensus 225 L~Va~~ng~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 225 LYVATFNGGTVQKVDPTTGKIL 246 (310)
T ss_pred EEEEEecCcEEEEECCCCCcEE
Confidence 9999999999999999876543
No 44
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.14 E-value=0.15 Score=53.07 Aligned_cols=135 Identities=21% Similarity=0.333 Sum_probs=76.7
Q ss_pred CCeeEEEEcCCCcEEEEeCCC------CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-
Q 010579 83 MEPFSVAVSPSGELLVLDSEN------SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN- 155 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n------~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn- 155 (507)
..+.+|++.++|.+||++-.. ++|++++.+|.....+.+ +....-...+...-..=....+||+.++|.
T Consensus 85 ~D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~v----P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~ 160 (326)
T PF13449_consen 85 LDPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPV----PAAFLPDANGTSGRRNNRGFEGLAVSPDGRT 160 (326)
T ss_pred CChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEcc----ccccccccCccccccCCCCeEEEEECCCCCE
Confidence 378899998899999999999 999999988433222111 111100000000000112467999999999
Q ss_pred EEEEeCC---------------CCeEEEEcCC--C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEE
Q 010579 156 IYIADTM---------------NMAIRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI 216 (507)
Q Consensus 156 IYVADs~---------------N~rIrk~d~~--G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVa 216 (507)
||++=-. ..||..++.. + +..++-- .+.+.....-..+.+++++ +++.|||.
T Consensus 161 l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~--------ld~~~~~~~~~~isd~~al-~d~~lLvL 231 (326)
T PF13449_consen 161 LFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYP--------LDPPPTAPGDNGISDIAAL-PDGRLLVL 231 (326)
T ss_pred EEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEe--------CCccccccCCCCceeEEEE-CCCcEEEE
Confidence 8876221 1467777743 3 2221110 0110111134467788865 56779999
Q ss_pred eCC-------CCeEEEEECCC
Q 010579 217 DRG-------NQAIREIQLHD 230 (507)
Q Consensus 217 D~g-------n~rIr~I~l~~ 230 (507)
.+. ..+|+++++..
T Consensus 232 ER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 232 ERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred EccCCCCccceEEEEEEEccc
Confidence 987 34667777653
No 45
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=96.04 E-value=0.61 Score=51.05 Aligned_cols=118 Identities=18% Similarity=0.288 Sum_probs=65.8
Q ss_pred CeeEEEEcCC-------CcEEEEeC---------CCCeEEEEeCCCC--CCCccE-EEecCCCCccccCCCCcccccCCC
Q 010579 84 EPFSVAVSPS-------GELLVLDS---------ENSNIYKISTSLS--PYSRPK-LVAGSPEGYYGHVDGRPRGARMNH 144 (507)
Q Consensus 84 ~P~gIaVd~d-------G~LYVaDs---------~n~rI~ki~~~g~--~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~ 144 (507)
-+.+|+++|+ +.|||+-+ ...+|.|+..+.. ...... ++.+.+.+ ..| .
T Consensus 80 GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-~~H-----------~ 147 (454)
T TIGR03606 80 GLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-NDH-----------N 147 (454)
T ss_pred ceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-CCc-----------C
Confidence 5789999875 35999842 2468988876421 111122 33333211 111 2
Q ss_pred cceEEEcCCCCEEEEeCCC--------------------------------CeEEEEcCCCcEEEecCcccCCCCCCCCC
Q 010579 145 PKGLAVDDRGNIYIADTMN--------------------------------MAIRKISDTGVTTIAGGKWSRGVGHVDGP 192 (507)
Q Consensus 145 P~GIaVd~dGnIYVADs~N--------------------------------~rIrk~d~~GVstIaGG~~g~~~G~~dg~ 192 (507)
-..|++++||.|||+-... ..|.+|+.+| ++..+ ..+.++.
T Consensus 148 GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DG--siP~d-----NPf~~g~ 220 (454)
T TIGR03606 148 GGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDG--SIPKD-----NPSINGV 220 (454)
T ss_pred CceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCC--CCCCC-----CCccCCC
Confidence 2368899999999963322 1355555554 11100 0011111
Q ss_pred ---ccCccCCCCceEEEEcCCCeEEEEeCCCC
Q 010579 193 ---SEDAKFSNDFDVVYVGSSCSLLVIDRGNQ 221 (507)
Q Consensus 193 ---~~~a~f~~P~gIa~vd~~G~LyVaD~gn~ 221 (507)
.-.-.+.+|+++++ +++|.||++|-+-.
T Consensus 221 ~~eIyA~G~RNp~Gla~-dp~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 221 VSHIFTYGHRNPQGLAF-TPDGTLYASEQGPN 251 (454)
T ss_pred cceEEEEeccccceeEE-CCCCCEEEEecCCC
Confidence 01224789999996 56899999997763
No 46
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.17 Score=52.98 Aligned_cols=165 Identities=15% Similarity=0.196 Sum_probs=99.4
Q ss_pred CeeEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579 84 EPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT 161 (507)
Q Consensus 84 ~P~gIaVd~dG-~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs 161 (507)
.++..-++|+| .|+++|-+..||..++.+ .|..... ....-..| ..|+-|++.|+|. .|+.--
T Consensus 146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~---dg~L~~~-~~~~v~~G-----------~GPRHi~FHpn~k~aY~v~E 210 (346)
T COG2706 146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLD---DGKLTPA-DPAEVKPG-----------AGPRHIVFHPNGKYAYLVNE 210 (346)
T ss_pred ccceeeeCCCCCEEEEeecCCceEEEEEcc---cCccccc-cccccCCC-----------CCcceEEEcCCCcEEEEEec
Confidence 37788899998 589999999999999987 2332211 11101111 3699999999998 899999
Q ss_pred CCCeEEEEc--CC-C-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc--eee
Q 010579 162 MNMAIRKIS--DT-G-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD--CSD 235 (507)
Q Consensus 162 ~N~rIrk~d--~~-G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~--~~~ 235 (507)
.|+.|-++. .. | +..+.--..-. .+ .+| -++-..|.+..+...||++|++-+.|..|..+... ...
T Consensus 211 L~stV~v~~y~~~~g~~~~lQ~i~tlP-~d-F~g------~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~ 282 (346)
T COG2706 211 LNSTVDVLEYNPAVGKFEELQTIDTLP-ED-FTG------TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLEL 282 (346)
T ss_pred cCCEEEEEEEcCCCceEEEeeeeccCc-cc-cCC------CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEE
Confidence 999988766 32 3 34332211000 00 111 22334566544555699999999999888766542 221
Q ss_pred ---CCCCC-ccceEEEEecceeEEehhHHHhcccCcccccccC
Q 010579 236 ---NYDDT-FHLGIFVLVAAAFFGYMLALLQRRVQAMFSSKDD 274 (507)
Q Consensus 236 ---~~~~G-~p~gIa~~~~a~~~gy~~~~lq~~~g~~~~~~~~ 274 (507)
...-| +|.+..+..++.|+ .++-|.-..-.+|....
T Consensus 283 ~~~~~teg~~PR~F~i~~~g~~L---iaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 283 VGITPTEGQFPRDFNINPSGRFL---IAANQKSDNITVFERDK 322 (346)
T ss_pred EEEeccCCcCCccceeCCCCCEE---EEEccCCCcEEEEEEcC
Confidence 22333 47777776665554 44445444434444333
No 47
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=95.97 E-value=0.046 Score=46.44 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=26.9
Q ss_pred cCCCcceEEEcCCCC-EEEEeCCCCeEEEEc
Q 010579 141 RMNHPKGLAVDDRGN-IYIADTMNMAIRKIS 170 (507)
Q Consensus 141 ~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d 170 (507)
.|..|+||+++++++ |||||...+.|+++.
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 378999999999876 999999999999875
No 48
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=95.30 E-value=0.14 Score=54.42 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=66.0
Q ss_pred cEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCeEEEEcCC
Q 010579 95 ELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMAIRKISDT 172 (507)
Q Consensus 95 ~LYVaDs~n~rI~ki~~~g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~rIrk~d~~ 172 (507)
-+||++...+.|..|+... .+ +..+.... +-+.++++.+||+ +||+.. .+.|.+||..
T Consensus 7 l~~V~~~~~~~v~viD~~t---~~~~~~i~~~~----------------~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~ 66 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGAT---NKVVARIPTGG----------------APHAGLKFSPDGRYLYVANR-DGTVSVIDLA 66 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT----SEEEEEE-ST----------------TEEEEEE-TT-SSEEEEEET-TSEEEEEETT
T ss_pred EEEEEecCCCEEEEEECCC---CeEEEEEcCCC----------------CceeEEEecCCCCEEEEEcC-CCeEEEEECC
Confidence 3568898899999998762 22 22332111 1245788999997 999976 5789999954
Q ss_pred C---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579 173 G---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 232 (507)
Q Consensus 173 G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~ 232 (507)
. +.+|.-|. .|.+|++..+...|||++...+.|..+|..+..
T Consensus 67 ~~~~v~~i~~G~------------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 67 TGKVVATIKVGG------------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp SSSEEEEEE-SS------------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred cccEEEEEecCC------------------CcceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence 3 55664332 577888765666799999999999999987644
No 49
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=95.13 E-value=0.38 Score=51.70 Aligned_cols=133 Identities=21% Similarity=0.294 Sum_probs=77.6
Q ss_pred CCeeEEEEcCC-CcEEEEeCCCCeEEEEe-----CCCCCCCccEEEecCCCCcccc--CCCCcccccC----------CC
Q 010579 83 MEPFSVAVSPS-GELLVLDSENSNIYKIS-----TSLSPYSRPKLVAGSPEGYYGH--VDGRPRGARM----------NH 144 (507)
Q Consensus 83 ~~P~gIaVd~d-G~LYVaDs~n~rI~ki~-----~~g~~~g~i~~vaG~~~G~~G~--~dG~~~~a~f----------n~ 144 (507)
.+|.|++++|. |.||++|.+...++--+ ..|..+|=+....|.. ..|. .++ ...+.+ -.
T Consensus 239 RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~--~~g~~~~~~-~~~~~~~~p~~~~~~h~A 315 (399)
T COG2133 239 RNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQN--YDGRAIPDG-TVVAGAIQPVYTWAPHIA 315 (399)
T ss_pred CCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcc--cCccccCCC-cccccccCCceeeccccc
Confidence 58999999994 99999998875551111 1122222222221110 0010 011 011111 34
Q ss_pred cceEEEcCC-------CCEEEEeCCCCeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEE
Q 010579 145 PKGLAVDDR-------GNIYIADTMNMAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI 216 (507)
Q Consensus 145 P~GIaVd~d-------GnIYVADs~N~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVa 216 (507)
|.||++-.- |.+||+--+...+...+.+| ...+..+-- .+ |. -..|.+|+ +..||.|||+
T Consensus 316 psGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl---~~--d~------~gR~~dV~-v~~DGallv~ 383 (399)
T COG2133 316 PSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFL---SG--DL------GGRPRDVA-VAPDGALLVL 383 (399)
T ss_pred cceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEE---ec--CC------CCcccceE-ECCCCeEEEe
Confidence 589999842 68999988887777777766 232221110 00 00 14899998 6899999999
Q ss_pred eCC-CCeEEEEECCC
Q 010579 217 DRG-NQAIREIQLHD 230 (507)
Q Consensus 217 D~g-n~rIr~I~l~~ 230 (507)
|-. +++|+++...+
T Consensus 384 ~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 384 TDQGDGRILRVSYAG 398 (399)
T ss_pred ecCCCCeEEEecCCC
Confidence 877 77999998653
No 50
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.89 E-value=1 Score=46.78 Aligned_cols=161 Identities=11% Similarity=0.058 Sum_probs=84.8
Q ss_pred CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCC---CCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEE
Q 010579 82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSP---YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYI 158 (507)
Q Consensus 82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~---~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYV 158 (507)
+.+|+||++.|.|-+||+|.+.+....++.+... .... +++..+ ...+ ...-..|+||++.....+-|
T Consensus 22 L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~-L~vtiP-~~~~-------~~~~~~PTGiVfN~~~~F~v 92 (336)
T TIGR03118 22 LRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDP-LVVVIP-APPP-------LAAEGTPTGQVFNGSDTFVV 92 (336)
T ss_pred ccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccc-eEEEec-CCCC-------CCCCCCccEEEEeCCCceEE
Confidence 4689999999999999999999998888865110 1111 111111 0000 01224699999986544444
Q ss_pred EeCCCC--eEEEE-cCCC-cEEEecCcccCCCCCCCCC---ccCccCC-CC-----ceEEEE--cCCCeEEEEeCCCCeE
Q 010579 159 ADTMNM--AIRKI-SDTG-VTTIAGGKWSRGVGHVDGP---SEDAKFS-ND-----FDVVYV--GSSCSLLVIDRGNQAI 223 (507)
Q Consensus 159 ADs~N~--rIrk~-d~~G-VstIaGG~~g~~~G~~dg~---~~~a~f~-~P-----~gIa~v--d~~G~LyVaD~gn~rI 223 (507)
+-.+.. ....| +.+| |+--.... +-. .....+. .. .|+|+. .....||.+|-.+++|
T Consensus 93 t~~g~~~~a~Fif~tEdGTisaW~p~v--------~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 93 SGEGITGPSRFLFVTEDGTLSGWAPAL--------GTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRI 164 (336)
T ss_pred cCCCcccceeEEEEeCCceEEeecCcC--------CcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCce
Confidence 432221 11222 2444 22111100 000 0000010 01 244432 2356899999999999
Q ss_pred EEEECCCCceeeC-------CCCC-ccceEEEEecceeEEehhH
Q 010579 224 REIQLHDDDCSDN-------YDDT-FHLGIFVLVAAAFFGYMLA 259 (507)
Q Consensus 224 r~I~l~~~~~~~~-------~~~G-~p~gIa~~~~a~~~gy~~~ 259 (507)
.+++......... -..| -|-+|..+.+..|+-|+.-
T Consensus 165 DVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~q 208 (336)
T TIGR03118 165 DVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQ 208 (336)
T ss_pred EEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEec
Confidence 9998665433221 1112 2557777777777777543
No 51
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.86 E-value=0.091 Score=53.89 Aligned_cols=64 Identities=22% Similarity=0.388 Sum_probs=47.9
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC-ccEEEecCCCCccccCCCCcccccCCCcceEEEcC--CCCEEEEe
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYS-RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD--RGNIYIAD 160 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g-~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~--dGnIYVAD 160 (507)
.-.|+++|++|+||+++...+.|.++++.+.+.. ...+++-.. ..|..|.+++++. +|.|||.-
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~-------------~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP-------------RTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C-------------C-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcC-------------ceeeccceeeeccccCceEEEEE
Confidence 4569999999999999999999999999843321 345555322 2389999999999 99999985
No 52
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=94.53 E-value=0.37 Score=53.53 Aligned_cols=81 Identities=25% Similarity=0.307 Sum_probs=52.4
Q ss_pred CCCeeEEEEcC-CCcEEEEeCCCC----------------eEEEEeCCCC-C---CCccEEE--ecCCCCccccCCCCcc
Q 010579 82 GMEPFSVAVSP-SGELLVLDSENS----------------NIYKISTSLS-P---YSRPKLV--AGSPEGYYGHVDGRPR 138 (507)
Q Consensus 82 ~~~P~gIaVd~-dG~LYVaDs~n~----------------rI~ki~~~g~-~---~g~i~~v--aG~~~G~~G~~dG~~~ 138 (507)
..+|.+|++.| .|++|++.+.|. +|+|+-+... . ..+..++ +|.+.-..+.......
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 37999999999 678999988765 5777766532 1 1133333 3433211111111223
Q ss_pred cccCCCcceEEEcCCCCEEEEeCC
Q 010579 139 GARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 139 ~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
...|+.|-+|+||+.|+|||+.-+
T Consensus 496 ~~~f~~PDnl~fD~~GrLWi~TDg 519 (616)
T COG3211 496 ANWFNSPDNLAFDPWGRLWIQTDG 519 (616)
T ss_pred cccccCCCceEECCCCCEEEEecC
Confidence 356999999999999999998533
No 53
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=94.49 E-value=1.3 Score=46.21 Aligned_cols=139 Identities=18% Similarity=0.194 Sum_probs=81.4
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM 162 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~ 162 (507)
.-+.|++ .++.+|+..+.-+++..+++.-++.-....- ... ..+ ...=++-+|+|+.+ |. -||+-.+
T Consensus 104 diHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPp-----FIs----~la-~eDRCHLNGlA~~~-g~p~yVTa~~ 171 (335)
T TIGR03032 104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPP-----FIS----KLA-PEDRCHLNGMALDD-GEPRYVTALS 171 (335)
T ss_pred chhheee-cCCcEEEEECcceeEEEECCCCccccccCCc-----ccc----ccC-ccCceeecceeeeC-CeEEEEEEee
Confidence 4678899 6779999999999999999875542222110 000 000 00114566999985 55 7876332
Q ss_pred C------CeEEEEcCCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC-CCcee
Q 010579 163 N------MAIRKISDTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH-DDDCS 234 (507)
Q Consensus 163 N------~rIrk~d~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~-~~~~~ 234 (507)
. .|=.+. .+| +--|..+. .....|..|.+--. -+|+|||.|.+.+.|.+++++ +....
T Consensus 172 ~sD~~~gWR~~~~-~gG~vidv~s~e-----------vl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~ 237 (335)
T TIGR03032 172 QSDVADGWREGRR-DGGCVIDIPSGE-----------VVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQP 237 (335)
T ss_pred ccCCccccccccc-CCeEEEEeCCCC-----------EEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEE
Confidence 1 111111 122 22221111 01112555666554 468999999999999999998 44434
Q ss_pred eCCCCCccceEEEE
Q 010579 235 DNYDDTFHLGIFVL 248 (507)
Q Consensus 235 ~~~~~G~p~gIa~~ 248 (507)
...-.|+|.|++..
T Consensus 238 Va~vpG~~rGL~f~ 251 (335)
T TIGR03032 238 VAFLPGFTRGLAFA 251 (335)
T ss_pred EEECCCCCccccee
Confidence 44556788888877
No 54
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=0.13 Score=53.02 Aligned_cols=73 Identities=25% Similarity=0.438 Sum_probs=47.4
Q ss_pred EEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCe
Q 010579 87 SVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA 165 (507)
Q Consensus 87 gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~r 165 (507)
++.+++ .|.|+|.-...++++.++..|...+.+.+..|. .| .....-.|.|||+|++|+|||+.--| .
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~----~g------L~~dipqaEGiamDd~g~lYIvSEPn-l 305 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGN----HG------LSSDIPQAEGIAMDDDGNLYIVSEPN-L 305 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCC----CC------CcccCCCcceeEECCCCCEEEEecCC-c
Confidence 445554 567888877888889998875443333333332 22 12346689999999999999987554 3
Q ss_pred EEEEc
Q 010579 166 IRKIS 170 (507)
Q Consensus 166 Irk~d 170 (507)
-.+|.
T Consensus 306 fy~F~ 310 (316)
T COG3204 306 FYRFT 310 (316)
T ss_pred ceecc
Confidence 34444
No 55
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=94.34 E-value=0.14 Score=37.36 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=31.7
Q ss_pred CcEEEEeCCCC-eEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC
Q 010579 94 GELLVLDSENS-NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD 152 (507)
Q Consensus 94 G~LYVaDs~n~-rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~ 152 (507)
|+||.+|...+ .|.+.+.+|+. ..+++.. .+.+|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~---------------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSN---RRTVISD---------------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTS---EEEEEES---------------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCC---eEEEEEC---------------CCCCcCEEEECC
Confidence 57999999999 99999998632 3444432 378999999984
No 56
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.29 E-value=7.8 Score=40.28 Aligned_cols=154 Identities=14% Similarity=0.206 Sum_probs=82.6
Q ss_pred CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCC-CCEEEEe
Q 010579 82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDR-GNIYIAD 160 (507)
Q Consensus 82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~d-GnIYVAD 160 (507)
...|.+|+.-.+|...++|-...+++++..+-. +++..+. ...-.-|..++ .+..| .|+|.|+. +.+|||-
T Consensus 128 ~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~--t~~~~~~-~~~i~L~~~~k--~N~Gf---EGlA~d~~~~~l~~aK 199 (316)
T COG3204 128 FSDPETIEYIGGNQFVIVDERDRALYLFTVDAD--TTVISAK-VQKIPLGTTNK--KNKGF---EGLAWDPVDHRLFVAK 199 (316)
T ss_pred cCChhHeEEecCCEEEEEehhcceEEEEEEcCC--ccEEecc-ceEEeccccCC--CCcCc---eeeecCCCCceEEEEE
Confidence 357999999888888899988899999876521 1111111 10000010011 01123 49999995 4588885
Q ss_pred CCC-CeEEEEcC--CCcEEEecCcccCCCCCCCCCccC--ccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579 161 TMN-MAIRKISD--TGVTTIAGGKWSRGVGHVDGPSED--AKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 235 (507)
Q Consensus 161 s~N-~rIrk~d~--~GVstIaGG~~g~~~G~~dg~~~~--a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~ 235 (507)
-.| -+|.+++. +..+.-+.. .+... --+..-.++.+....++|+|..-..++|.+++..++....
T Consensus 200 Er~P~~I~~~~~~~~~l~~~~~~----------~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ 269 (316)
T COG3204 200 ERNPIGIFEVTQSPSSLSVHASL----------DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIEL 269 (316)
T ss_pred ccCCcEEEEEecCCccccccccc----------CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeee
Confidence 543 35655551 122211111 01111 1123344566555567777777777777777777764322
Q ss_pred ----CCCCC------ccceEEEEeccee
Q 010579 236 ----NYDDT------FHLGIFVLVAAAF 253 (507)
Q Consensus 236 ----~~~~G------~p~gIa~~~~a~~ 253 (507)
-...| -+.|||++....+
T Consensus 270 lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 270 LSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred EEeccCCCCCcccCCCcceeEECCCCCE
Confidence 11122 2569999876543
No 57
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.62 E-value=0.16 Score=35.68 Aligned_cols=33 Identities=36% Similarity=0.442 Sum_probs=28.6
Q ss_pred cCCCcceEEEcCC-CCEEEEeCCCCeEEEEcCCC
Q 010579 141 RMNHPKGLAVDDR-GNIYIADTMNMAIRKISDTG 173 (507)
Q Consensus 141 ~fn~P~GIaVd~d-GnIYVADs~N~rIrk~d~~G 173 (507)
.+..|+||++|+. +.||.+|.....|.+.+-+|
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 4678999999996 45999999999999988666
No 58
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.50 E-value=4.9 Score=44.10 Aligned_cols=166 Identities=13% Similarity=0.171 Sum_probs=80.4
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEE-EecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579 86 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKL-VAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 164 (507)
Q Consensus 86 ~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~-vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~ 164 (507)
..|.+...|.||+-|..+.+|-+++-++........ ..-.+..+ +.+-.+..-.-|++-+.|..||-+...+
T Consensus 279 krIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~psky-------ledfa~~~Gd~ia~VSRGkaFi~~~~~~ 351 (668)
T COG4946 279 KRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKY-------LEDFAVVNGDYIALVSRGKAFIMRPWDG 351 (668)
T ss_pred cEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHh-------hhhhccCCCcEEEEEecCcEEEECCCCC
Confidence 367888888999999999999998865322100000 00000000 0000011112355555666666666544
Q ss_pred eEEEEcCCC-cE----------EEecCcccCC---CCCCCC--CccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEEC
Q 010579 165 AIRKISDTG-VT----------TIAGGKWSRG---VGHVDG--PSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 228 (507)
Q Consensus 165 rIrk~d~~G-Vs----------tIaGG~~g~~---~G~~dg--~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l 228 (507)
-+..+...| |. .+.|...|.. .+...+ ...+..|.+-..|. ++.+|.-.|+-..+..|+.|++
T Consensus 352 ~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~-vs~dGK~~vvaNdr~el~vidi 430 (668)
T COG4946 352 YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVK-VSPDGKKVVVANDRFELWVIDI 430 (668)
T ss_pred eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEE-EcCCCcEEEEEcCceEEEEEEe
Confidence 433333222 21 1111111100 011111 11222344444554 4555553334344555666666
Q ss_pred CCCceee--CCCCCccceEEEEecceeEEehhH
Q 010579 229 HDDDCSD--NYDDTFHLGIFVLVAAAFFGYMLA 259 (507)
Q Consensus 229 ~~~~~~~--~~~~G~p~gIa~~~~a~~~gy~~~ 259 (507)
+.+.... ...-|+.+++++--.+-|++|+++
T Consensus 431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP 463 (668)
T COG4946 431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP 463 (668)
T ss_pred cCCCeeEecccccceeEEEEEcCCceeEEEecC
Confidence 6555443 344567788888888889999888
No 59
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.50 E-value=1.8 Score=47.14 Aligned_cols=113 Identities=20% Similarity=0.242 Sum_probs=79.3
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC-ccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYS-RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g-~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
.-.++++.++|...++-+....|+.++... .+ .+.++.|.. +....+++.++|+++++=+.
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~--~~~~~~~l~gH~----------------~~v~~~~f~p~g~~i~Sgs~ 266 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKD--DGRNLKTLKGHS----------------TYVTSVAFSPDGNLLVSGSD 266 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccC--CCeEEEEecCCC----------------CceEEEEecCCCCEEEEecC
Confidence 356889999999888888889999998731 12 234544432 34579999999999998888
Q ss_pred CCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579 163 NMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 232 (507)
Q Consensus 163 N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~ 232 (507)
.+.||..+.. | +.++.+-. + .-.+++ ...+++++++-...+.|+.+++.+..
T Consensus 267 D~tvriWd~~~~~~~~~l~~hs--------~---------~is~~~-f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 267 DGTVRIWDVRTGECVRKLKGHS--------D---------GISGLA-FSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred CCcEEEEeccCCeEEEeeeccC--------C---------ceEEEE-ECCCCCEEEEcCCCccEEEEECCCCc
Confidence 8889999844 3 44443321 1 123455 46677777776778888888888777
No 60
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.23 E-value=3.1 Score=43.27 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=28.5
Q ss_pred CcceEEEcCCCCEEEEeCCC------CeEEEEcCCC
Q 010579 144 HPKGLAVDDRGNIYIADTMN------MAIRKISDTG 173 (507)
Q Consensus 144 ~P~GIaVd~dGnIYVADs~N------~rIrk~d~~G 173 (507)
.+.||++.++|.+||++-+. ++|++++.+|
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G 121 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDG 121 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCC
Confidence 78999998899999999999 9999999888
No 61
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.55 E-value=3.7 Score=41.97 Aligned_cols=111 Identities=12% Similarity=0.136 Sum_probs=69.0
Q ss_pred CeeEEEEcCCCcEEEEeCCC--CeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579 84 EPFSVAVSPSGELLVLDSEN--SNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 161 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n--~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs 161 (507)
.-.|+.+..+|.||.+-... ++|++++..+ |++....--+...+| .||++-. +.||.--.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t---g~~~~~~~l~~~~Fg--------------EGit~~~-d~l~qLTW 107 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLET---GKVLQSVPLPPRYFG--------------EGITILG-DKLYQLTW 107 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTT---SSEEEEEE-TTT--E--------------EEEEEET-TEEEEEES
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCC---CcEEEEEECCccccc--------------eeEEEEC-CEEEEEEe
Confidence 35688887888999997654 6899999883 554433333323333 4999984 47999999
Q ss_pred CCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 162 MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 162 ~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
.++...++|.+....+.--.. -...+|++. ++..|+++| |..+|+.+++..
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y---------------~~EGWGLt~--dg~~Li~SD-GS~~L~~~dP~~ 158 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY---------------PGEGWGLTS--DGKRLIMSD-GSSRLYFLDPET 158 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE----------------SSS--EEEE--CSSCEEEE--SSSEEEEE-TTT
T ss_pred cCCeEEEEccccceEEEEEec---------------CCcceEEEc--CCCEEEEEC-CccceEEECCcc
Confidence 999999999877433311000 013467762 344666666 367777777654
No 62
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=92.41 E-value=0.58 Score=52.14 Aligned_cols=81 Identities=21% Similarity=0.433 Sum_probs=52.4
Q ss_pred cccCCCcceEEEcC-CCCEEEEeCCCC-------------------eEEEEcCCC---------cEE-EecCcccCCCCC
Q 010579 139 GARMNHPKGLAVDD-RGNIYIADTMNM-------------------AIRKISDTG---------VTT-IAGGKWSRGVGH 188 (507)
Q Consensus 139 ~a~fn~P~GIaVd~-dGnIYVADs~N~-------------------rIrk~d~~G---------Vst-IaGG~~g~~~G~ 188 (507)
.+.|+.|.+|++++ +|.||||-+.|. +|.+++..+ ..+ +.+|........
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 35799999999998 588999988776 688888432 111 222221110111
Q ss_pred CCCCccCccCCCCceEEEEcCCCeEEEEeCCC
Q 010579 189 VDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN 220 (507)
Q Consensus 189 ~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn 220 (507)
.........|.+|-.|++ +..|+|||+.-++
T Consensus 426 ~~~~~~~~~f~sPDNL~~-d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAF-DPDGNLWIQEDGG 456 (524)
T ss_pred ccCcccCCCcCCCCceEE-CCCCCEEEEeCCC
Confidence 122334567999999985 7889999885433
No 63
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.25 E-value=5.1 Score=45.57 Aligned_cols=82 Identities=9% Similarity=0.135 Sum_probs=54.7
Q ss_pred CCcceEEEcCCCC-EEEEeCCCCeEEEEcCCCcE-EEecCcccCCCCCCCCCccCccC-CCCceEEEEcCCCeEEEEeCC
Q 010579 143 NHPKGLAVDDRGN-IYIADTMNMAIRKISDTGVT-TIAGGKWSRGVGHVDGPSEDAKF-SNDFDVVYVGSSCSLLVIDRG 219 (507)
Q Consensus 143 n~P~GIaVd~dGn-IYVADs~N~rIrk~d~~GVs-tIaGG~~g~~~G~~dg~~~~a~f-~~P~gIa~vd~~G~LyVaD~g 219 (507)
+.|.||+++|||. +||+....+.|.+||...+. .+++.-. ..+--..+..+ ..|...++ |.+|+.|++=..
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~-----~~~~vvaevevGlGPLHTaF-Dg~G~aytslf~ 394 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK-----PRDAVVAEPELGLGPLHTAF-DGRGNAYTTLFL 394 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC-----ccceEEEeeccCCCcceEEE-CCCCCEEEeEee
Confidence 5899999999998 89988888899999965522 2221100 00000011111 26888886 788899988777
Q ss_pred CCeEEEEECCC
Q 010579 220 NQAIREIQLHD 230 (507)
Q Consensus 220 n~rIr~I~l~~ 230 (507)
...|-++++..
T Consensus 395 dsqv~kwn~~~ 405 (635)
T PRK02888 395 DSQIVKWNIEA 405 (635)
T ss_pred cceeEEEehHH
Confidence 78888888765
No 64
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=91.78 E-value=1.9 Score=50.66 Aligned_cols=141 Identities=17% Similarity=0.153 Sum_probs=103.6
Q ss_pred CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEe
Q 010579 83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIAD 160 (507)
Q Consensus 83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVAD 160 (507)
..|.++++|- .+++|.+|..+..|.+.+.+++. ..+++.. .+..|..+++++ .|.+|.+|
T Consensus 480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~---~~vl~~~---------------~l~~~r~~~v~p~~g~~~wtd 541 (877)
T KOG1215|consen 480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS---RKVLVSK---------------DLDLPRSIAVDPEKGLMFWTD 541 (877)
T ss_pred cccCcEEEEeccCCceecccCCceeEEEEccCCc---eeEEEec---------------CCCCccceeeccccCeeEEec
Confidence 4689999997 67899999999999999976422 2333333 146899999999 67899999
Q ss_pred CC-CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCC-eEEEEECCCCce--e
Q 010579 161 TM-NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ-AIREIQLHDDDC--S 234 (507)
Q Consensus 161 s~-N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~-rIr~I~l~~~~~--~ 234 (507)
.+ ..+|.+-..+| ..++.. ..+..|++++..-.+..+|-+|.-.. .|.++..++..- .
T Consensus 542 ~~~~~~i~ra~~dg~~~~~l~~----------------~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~ 605 (877)
T KOG1215|consen 542 WGQPPRIERASLDGSERAVLVT----------------NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVV 605 (877)
T ss_pred CCCCchhhhhcCCCCCceEEEe----------------CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEe
Confidence 98 45777777777 344421 11568999998777889999999888 788988887654 2
Q ss_pred eCCCCCccceEEEEecceeEEeh
Q 010579 235 DNYDDTFHLGIFVLVAAAFFGYM 257 (507)
Q Consensus 235 ~~~~~G~p~gIa~~~~a~~~gy~ 257 (507)
.......|-++++..+..|.-+.
T Consensus 606 ~~~~~~~p~~~~~~~~~iyw~d~ 628 (877)
T KOG1215|consen 606 DSEDLPHPFGLSVFEDYIYWTDW 628 (877)
T ss_pred ccccCCCceEEEEecceeEEeec
Confidence 23445567888887766655443
No 65
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=91.38 E-value=0.64 Score=32.52 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=31.0
Q ss_pred cCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579 197 KFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD 231 (507)
Q Consensus 197 ~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~ 231 (507)
.+..|.++++....+.||.+|...+.|.+.++++.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 46789999988888999999999999999998764
No 66
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.33 E-value=5.3 Score=42.86 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=50.2
Q ss_pred CCeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEe-cCCCCccccCCCCcccccCCCcceEEEc--C--CCCE
Q 010579 83 MEPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVA-GSPEGYYGHVDGRPRGARMNHPKGLAVD--D--RGNI 156 (507)
Q Consensus 83 ~~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~va-G~~~G~~G~~dG~~~~a~fn~P~GIaVd--~--dGnI 156 (507)
.+|.|+++|. .|.|||++-. .-|+++..+-........++ ..+.+ -.....||++- . +|.|
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~------------l~aDvEGlaly~~~~g~gYL 274 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDG------------LVADVEGLALYYGSDGKGYL 274 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSS------------B-S-EEEEEEEE-CCC-EEE
T ss_pred CcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccc------------cccCccceEEEecCCCCeEE
Confidence 3799999997 7899999864 79999987632211122221 11111 12356788883 3 4569
Q ss_pred EEEeCCCCeEEEEcCCC
Q 010579 157 YIADTMNMAIRKISDTG 173 (507)
Q Consensus 157 YVADs~N~rIrk~d~~G 173 (507)
.|++-+++...+++..+
T Consensus 275 ivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 275 IVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEGGGTEEEEEESST
T ss_pred EEEcCCCCeEEEEecCC
Confidence 99999999999999554
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=91.27 E-value=12 Score=38.86 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=51.8
Q ss_pred eecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC
Q 010579 75 VFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG 154 (507)
Q Consensus 75 ~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG 154 (507)
.+.|... .=..|++.|-++.|++-+....|+.++... .+ +.|- -.+..+--+|+||+|
T Consensus 95 YF~GH~~--~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~---~~----------cqg~-------l~~~~~pi~AfDp~G 152 (311)
T KOG1446|consen 95 YFPGHKK--RVNSLSVSPKDDTFLSSSLDKTVRLWDLRV---KK----------CQGL-------LNLSGRPIAAFDPEG 152 (311)
T ss_pred EcCCCCc--eEEEEEecCCCCeEEecccCCeEEeeEecC---CC----------CceE-------EecCCCcceeECCCC
Confidence 3444444 455788888778888888888888888751 11 1111 123345568999999
Q ss_pred CEEEEeCCCCeEEEEc
Q 010579 155 NIYIADTMNMAIRKIS 170 (507)
Q Consensus 155 nIYVADs~N~rIrk~d 170 (507)
.|+.+-.++..|..+|
T Consensus 153 LifA~~~~~~~IkLyD 168 (311)
T KOG1446|consen 153 LIFALANGSELIKLYD 168 (311)
T ss_pred cEEEEecCCCeEEEEE
Confidence 9999888888999999
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.57 E-value=14 Score=34.13 Aligned_cols=112 Identities=20% Similarity=0.227 Sum_probs=66.7
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
....+.+.+++.++++...++.|..++... +....... + .-.....+++++++.++++-..+
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~------~---------~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVET---GKCLTTLR------G---------HTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCC---cEEEEEec------c---------CCCcEEEEEEcCcCCEEEEEcCC
Confidence 466788888878888777678888888751 22111111 0 11246789999988877776667
Q ss_pred CeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eEEEEeCCCCeEEEEECCCCc
Q 010579 164 MAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHDDD 232 (507)
Q Consensus 164 ~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~LyVaD~gn~rIr~I~l~~~~ 232 (507)
+.|+.++.. + +..+... -.....+.+ .+++ .|+++.. ++.|+.++.....
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~-----------------~~~i~~~~~-~~~~~~l~~~~~-~~~i~i~d~~~~~ 210 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGH-----------------TGEVNSVAF-SPDGEKLLSSSS-DGTIKLWDLSTGK 210 (289)
T ss_pred CcEEEEEccccccceeEecC-----------------ccccceEEE-CCCcCEEEEecC-CCcEEEEECCCCc
Confidence 788888854 2 3333210 012345554 4444 4544444 7778888776543
No 69
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.48 E-value=28 Score=37.45 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=42.1
Q ss_pred CCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee------eCCCCCc---cceEEEEecceeEEehhHHHhcc
Q 010579 200 NDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS------DNYDDTF---HLGIFVLVAAAFFGYMLALLQRR 264 (507)
Q Consensus 200 ~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~------~~~~~G~---p~gIa~~~~a~~~gy~~~~lq~~ 264 (507)
.+-++++++..+.|||++.. .-||++..+.+.-. ...+.++ ..||++..+..--||.++.-|..
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~ 281 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGD 281 (381)
T ss_dssp -EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG
T ss_pred cceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCC
Confidence 56788888889999999985 79999998754311 1222333 45888876555557777776654
No 70
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=90.00 E-value=1.2 Score=37.93 Aligned_cols=33 Identities=18% Similarity=0.112 Sum_probs=28.6
Q ss_pred CCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 198 FSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 198 f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
|..|+||++.++...|||++...+.|+.+..+.
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 678999997667789999999999999988654
No 71
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=89.72 E-value=1.2 Score=48.39 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=83.5
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
.-|++..+|.+|+.+++|-.-|.+.++.+. ...+.++.|.+ -..| .....|+.|..++|..+|-|+|+|..
T Consensus 168 qvhyg~t~df~~~~d~TgV~mH~t~kp~pk---la~~~L~l~~~-tvp~-----~~~~~f~~~tsc~v~~n~~ihvfa~r 238 (501)
T KOG3567|consen 168 QVHYGLTIDFDGNYDVTGVGMHQTEKPQPK---LAKTMLLLGDG-TVPG-----EGTKHFETPTSCAVEENGPIHVFAYR 238 (501)
T ss_pred EeccccccCCCCCcccccceeeeeccCCch---hhceEEeecCC-ccCC-----CCccccCCCceEEEecCcceeeEEee
Confidence 478899999999999999999999999886 34555555442 1112 23356889999999999999999987
Q ss_pred -CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcC-CCeEEEEeCCCCeEEEEECC
Q 010579 163 -NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGS-SCSLLVIDRGNQAIREIQLH 229 (507)
Q Consensus 163 -N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~-~G~LyVaD~gn~rIr~I~l~ 229 (507)
|.+|.+.+-.| |.-.--|.+.. -| . ..|.-.-++.+ ...|-|+|..|.++|.+.-.
T Consensus 239 ~hTh~Lgk~vsG~lv~q~~~g~w~~-----ig-~-----r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s 298 (501)
T KOG3567|consen 239 CHTHILGKVVSGYLVAQKHEGHWTL-----IG-R-----RDPQLPQLFEPVNHIVCVADGDNQRVRCFFQS 298 (501)
T ss_pred eeehhhcceeeeeEeeeccCcceee-----cc-c-----cCCCchhhhcCCCcceeeecCCceEEEEEEcc
Confidence 55677777666 11110111100 00 0 02332222233 34788899999999999755
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=89.23 E-value=32 Score=37.58 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=68.2
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
.=+..+|.|||.||.+-..++.|..++... +. .++ .+.|+ .| --..|++..+|...++-+..
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks---~~--~~a----~Fpgh-t~--------~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKS---QT--NVA----KFPGH-TG--------PVKAISFSENGYWLATAADD 410 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCC---cc--ccc----cCCCC-CC--------ceeEEEeccCceEEEEEecC
Confidence 456789999999999999999999998752 11 111 12222 11 23579999999877777777
Q ss_pred CeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 164 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 164 ~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
..|+.+|-.- +.++.-- .+..-..+.+ |..|..+++-...=+|..+...+
T Consensus 411 ~~V~lwDLRKl~n~kt~~l~----------------~~~~v~s~~f-D~SGt~L~~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQLD----------------EKKEVNSLSF-DQSGTYLGIAGSDLQVYICKKKT 463 (506)
T ss_pred CeEEEEEehhhcccceeecc----------------ccccceeEEE-cCCCCeEEeecceeEEEEEeccc
Confidence 7799999433 4555321 1112334554 56666555553334455554333
No 73
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=88.34 E-value=11 Score=39.00 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=79.1
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCC-CCccccCCCCcccccCCCcceEEEc----CCCCEE
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP-EGYYGHVDGRPRGARMNHPKGLAVD----DRGNIY 157 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~-~G~~G~~dG~~~~a~fn~P~GIaVd----~dGnIY 157 (507)
.+-++|..+++|+++|+-...+.|++|+.. +|.+.-..|.. .+.+.. ....|..-.+..+- +++.|-
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~---tG~I~W~lgG~~~~df~~-----~~~~f~~QHdar~~~~~~~~~~Is 215 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPS---TGKIIWRLGGKRNSDFTL-----PATNFSWQHDARFLNESNDDGTIS 215 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECC---CCcEEEEeCCCCCCcccc-----cCCcEeeccCCEEeccCCCCCEEE
Confidence 577888899999999999999999999976 46666555543 111111 22345544455554 566677
Q ss_pred EEeC----------CCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEE
Q 010579 158 IADT----------MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIRE 225 (507)
Q Consensus 158 VADs----------~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~ 225 (507)
|-|- ...+|..+|... ++.+..-. ....+.......+++ .=++|+++|....+++|..
T Consensus 216 lFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~-~~~~~~~s~~~G~~Q---------~L~nGn~li~~g~~g~~~E 285 (299)
T PF14269_consen 216 LFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYS-DHPDGFYSPSQGSAQ---------RLPNGNVLIGWGNNGRISE 285 (299)
T ss_pred EEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee-cCCCcccccCCCcce---------ECCCCCEEEecCCCceEEE
Confidence 7665 245677777554 33221110 000000000011111 2256999999999999999
Q ss_pred EECCCCc
Q 010579 226 IQLHDDD 232 (507)
Q Consensus 226 I~l~~~~ 232 (507)
++.++..
T Consensus 286 ~~~~G~v 292 (299)
T PF14269_consen 286 FTPDGEV 292 (299)
T ss_pred ECCCCCE
Confidence 9988754
No 74
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=88.33 E-value=34 Score=35.41 Aligned_cols=88 Identities=20% Similarity=0.287 Sum_probs=59.2
Q ss_pred cCCCcceEEEcCCCCEEEEeCCCCeEEEEc-CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEE---cCCCeEEE
Q 010579 141 RMNHPKGLAVDDRGNIYIADTMNMAIRKIS-DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV---GSSCSLLV 215 (507)
Q Consensus 141 ~fn~P~GIaVd~dGnIYVADs~N~rIrk~d-~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~v---d~~G~LyV 215 (507)
-.-+.++|..+.+|+++|+-...+.|.+|+ .+| |.=..||+.+. .+.. ....|..-++..++ +.++.|.|
T Consensus 142 D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~--df~~---~~~~f~~QHdar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 142 DYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNS--DFTL---PATNFSWQHDARFLNESNDDGTISL 216 (299)
T ss_pred CccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCC--cccc---cCCcEeeccCCEEeccCCCCCEEEE
Confidence 356788999999999999999999999999 666 43333554221 1111 44557777776665 36778888
Q ss_pred EeC----------CCCeEEEEECCCCce
Q 010579 216 IDR----------GNQAIREIQLHDDDC 233 (507)
Q Consensus 216 aD~----------gn~rIr~I~l~~~~~ 233 (507)
.|. ..++|..+++....+
T Consensus 217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~ 244 (299)
T PF14269_consen 217 FDNANSDFNGTEPSRGLVLELDPETMTV 244 (299)
T ss_pred EcCCCCCCCCCcCCCceEEEEECCCCEE
Confidence 887 345666666654433
No 75
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=88.08 E-value=0.42 Score=34.28 Aligned_cols=21 Identities=43% Similarity=0.749 Sum_probs=17.3
Q ss_pred CCcceEEEcCCCCEEEEeCCC
Q 010579 143 NHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 143 n~P~GIaVd~dGnIYVADs~N 163 (507)
..+.+|++|++|||||+=..+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eeEEEEEECCCCCEEEEEeec
Confidence 368899999999999985443
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=87.22 E-value=26 Score=36.53 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=74.8
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
.+--+|+||+|-++.+-.++..|..++...-..|-..++.- .......=++|-+.+||...+.-+.+
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i-------------~~~~~~ew~~l~FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSI-------------TDNDEAEWTDLEFSPDGKSILLSTNA 208 (311)
T ss_pred CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEcc-------------CCCCccceeeeEEcCCCCEEEEEeCC
Confidence 45567899999998888887788888864110111111110 11223445689999999966666677
Q ss_pred CeEEEEc-CCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579 164 MAIRKIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 232 (507)
Q Consensus 164 ~rIrk~d-~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~ 232 (507)
+-|+.+| -+| ..++.+-.+ ..+.|-+-+ ..+++..++.-.+.++|....++.+.
T Consensus 209 s~~~~lDAf~G~~~~tfs~~~~--------------~~~~~~~a~-ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTFSGYPN--------------AGNLPLSAT-FTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred CcEEEEEccCCcEeeeEeeccC--------------CCCcceeEE-ECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 8889998 456 455543211 112333333 45677777777778888888876533
No 77
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=86.78 E-value=3.4 Score=44.61 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=54.3
Q ss_pred CCeeEEEEcCC-------CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC
Q 010579 83 MEPFSVAVSPS-------GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN 155 (507)
Q Consensus 83 ~~P~gIaVd~d-------G~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn 155 (507)
..|.|++|-.. |.|||+-.....+.+.++++ ...++.... ..+ |. -..|.+|++.+||.
T Consensus 314 ~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g----~~~~~~~~f--l~~--d~------~gR~~dV~v~~DGa 379 (399)
T COG2133 314 IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDG----NYKVVLTGF--LSG--DL------GGRPRDVAVAPDGA 379 (399)
T ss_pred cccceeEEecCCcCccccCcEEEEeecceeEEEeccCC----CcceEEEEE--Eec--CC------CCcccceEECCCCe
Confidence 45789999742 68999999888888888873 333332211 111 11 14899999999999
Q ss_pred EEEEeCC-CCeEEEEcCCC
Q 010579 156 IYIADTM-NMAIRKISDTG 173 (507)
Q Consensus 156 IYVADs~-N~rIrk~d~~G 173 (507)
|||+|-. +.+|.++...+
T Consensus 380 llv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 380 LLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred EEEeecCCCCeEEEecCCC
Confidence 9999877 66999988643
No 78
>PTZ00421 coronin; Provisional
Probab=86.59 E-value=26 Score=38.85 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=67.8
Q ss_pred eeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCC-----CccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC-CEE
Q 010579 85 PFSVAVSP-SGELLVLDSENSNIYKISTSLSPY-----SRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIY 157 (507)
Q Consensus 85 P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~-----g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG-nIY 157 (507)
-.+|+++| +++++++-+..+.|+.++...... ..+..+.| + -.....|++.+++ +++
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-------H---------~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-------H---------TKKVGIVSFHPSAMNVL 141 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-------C---------CCcEEEEEeCcCCCCEE
Confidence 46899998 888888888889999998652100 00111111 1 1234578888875 577
Q ss_pred EEeCCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579 158 IADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 233 (507)
Q Consensus 158 VADs~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~ 233 (507)
++=+..+.|+.+|-. + +.++.+.. ..-.+|++ ..+|.++++-..++.|+.+++....+
T Consensus 142 aSgs~DgtVrIWDl~tg~~~~~l~~h~-----------------~~V~sla~-spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 142 ASAGADMVVNVWDVERGKAVEVIKCHS-----------------DQITSLEW-NLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcCCC-----------------CceEEEEE-ECCCCEEEEecCCCEEEEEECCCCcE
Confidence 776667888888843 3 33332110 01234443 44566666666667777777665443
No 79
>PRK04792 tolB translocation protein TolB; Provisional
Probab=86.17 E-value=55 Score=35.54 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=38.3
Q ss_pred EEEEcCCCc-EEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-E-EEEeC
Q 010579 87 SVAVSPSGE-LLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I-YIADT 161 (507)
Q Consensus 87 gIaVd~dG~-LYVaDs--~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-I-YVADs 161 (507)
..+++|||. |+++.. ++..|++++..+ +.+..+.... ......++++||. | |.+|.
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t---g~~~~lt~~~----------------~~~~~p~wSpDG~~I~f~s~~ 326 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIAT---KALTRITRHR----------------AIDTEPSWHPDGKSLIFTSER 326 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCC---CCeEECccCC----------------CCccceEECCCCCEEEEEECC
Confidence 468899987 655432 334799998763 3333322110 1223467888887 4 44443
Q ss_pred -CCCeEEEEcCC
Q 010579 162 -MNMAIRKISDT 172 (507)
Q Consensus 162 -~N~rIrk~d~~ 172 (507)
++..|..++.+
T Consensus 327 ~g~~~Iy~~dl~ 338 (448)
T PRK04792 327 GGKPQIYRVNLA 338 (448)
T ss_pred CCCceEEEEECC
Confidence 34578888854
No 80
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.91 E-value=57 Score=35.50 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=75.7
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
.-+.++|+++|+++++-+..+.|+.++... +.. ..+.+.. ..-.++++.++|+++++-+.
T Consensus 248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---~~~~~~l~~hs----------------~~is~~~f~~d~~~l~s~s~ 308 (456)
T KOG0266|consen 248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---GECVRKLKGHS----------------DGISGLAFSPDGNLLVSASY 308 (456)
T ss_pred ceEEEEecCCCCEEEEecCCCcEEEEeccC---CeEEEeeeccC----------------CceEEEEECCCCCEEEEcCC
Confidence 458999999999999999999999999863 222 2222221 13458999999998887787
Q ss_pred CCeEEEEcCCC-cE----EEecCcccCCCCCCCCCccCccCCCC-ceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579 163 NMAIRKISDTG-VT----TIAGGKWSRGVGHVDGPSEDAKFSND-FDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 234 (507)
Q Consensus 163 N~rIrk~d~~G-Vs----tIaGG~~g~~~G~~dg~~~~a~f~~P-~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~ 234 (507)
.+.|+++|..+ .. ++.+... -. | ..+. ...++..+++-..++.|+..++....|.
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~---------------~~-~~~~~~-fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAEN---------------SA-PVTSVQ-FSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCC---------------CC-ceeEEE-ECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 99999999654 31 2222110 00 2 2333 4566666666666777777777655443
No 81
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=85.77 E-value=29 Score=32.00 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=64.6
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT 161 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs 161 (507)
....+++++++.++++-..++.|+.++... +.. ..+.. .-.....++++++|+ |+++.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~- 196 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRT---GKCVATLTG----------------HTGEVNSVAFSPDGEKLLSSS- 196 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccc---cccceeEec----------------CccccceEEECCCcCEEEEec-
Confidence 466777888777666666567777777641 111 11111 012456899999986 55554
Q ss_pred CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579 162 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 232 (507)
Q Consensus 162 ~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~ 232 (507)
.++.|+.++... +..+.+ .-.....+++ .+++.++++...++.|+.++.....
T Consensus 197 ~~~~i~i~d~~~~~~~~~~~~-----------------~~~~i~~~~~-~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 197 SDGTIKLWDLSTGKCLGTLRG-----------------HENGVNSVAF-SPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred CCCcEEEEECCCCceecchhh-----------------cCCceEEEEE-cCCCcEEEEEcCCCcEEEEEcCCce
Confidence 478899988543 222211 0113345554 4446777776667788888876543
No 82
>PRK02888 nitrous-oxide reductase; Validated
Probab=85.39 E-value=19 Score=41.12 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 199 SNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 199 ~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
.+|+||.+.++...+||+....+.|..|+...
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 47999997666667999999999999999877
No 83
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=85.27 E-value=8.3 Score=45.46 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=93.0
Q ss_pred CeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeC
Q 010579 84 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADT 161 (507)
Q Consensus 84 ~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs 161 (507)
....+.++. ++.+|-+|....+|.+...++...- -+.+ .....|.++++|- .+++|.+|.
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~---~~~~---------------~g~~~~~~lavD~~~~~~y~tDe 499 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSEC---ELCG---------------DGLCIPEGLAVDWIGDNIYWTDE 499 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccCCCccc---eEec---------------cCccccCcEEEEeccCCceeccc
Confidence 344444543 4579999998888888887643211 1122 1256899999997 567999999
Q ss_pred CCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCC-CCeEEEEECCCCceee--C
Q 010579 162 MNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRG-NQAIREIQLHDDDCSD--N 236 (507)
Q Consensus 162 ~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~g-n~rIr~I~l~~~~~~~--~ 236 (507)
.+..|.+.+.+| ..+++.. .+..|..+++.+..+.+|..|.+ ..+|.+-.+++..... .
T Consensus 500 ~~~~i~v~~~~g~~~~vl~~~----------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~ 563 (877)
T KOG1215|consen 500 GNCLIEVADLDGSSRKVLVSK----------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVT 563 (877)
T ss_pred CCceeEEEEccCCceeEEEec----------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEe
Confidence 999999998555 2344332 13467788877788999999998 5578888888866544 2
Q ss_pred CCCCccceEEEEec
Q 010579 237 YDDTFHLGIFVLVA 250 (507)
Q Consensus 237 ~~~G~p~gIa~~~~ 250 (507)
.+..+|+|++.+..
T Consensus 564 ~~~~~p~glt~d~~ 577 (877)
T KOG1215|consen 564 NGILWPNGLTIDYE 577 (877)
T ss_pred CCccCCCcceEEee
Confidence 33568999888764
No 84
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=84.08 E-value=22 Score=39.51 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=80.6
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
..|+.-++++||.++.+-+.++.|+.++.. +..-++...++.. +.+| ..-+.|+++.||+++.+-.+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~-~~~v~p~~~vk~A-----H~~g-------~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKG-SRTVRPVMKVKDA-----HLPG-------QDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecC-CcccccceEeeec-----cCCC-------CceeEEEeccccchhhhccC
Confidence 367788899999999998999999999863 2222222222221 1111 25678999999999999888
Q ss_pred CCeEEEEcCCC----cEEEecCcccCCCCCCCCCccCccCCCCceEEEE-------cCCCeEEEEeCCC-CeEEEEECCC
Q 010579 163 NMAIRKISDTG----VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYV-------GSSCSLLVIDRGN-QAIREIQLHD 230 (507)
Q Consensus 163 N~rIrk~d~~G----VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~v-------d~~G~LyVaD~gn-~rIr~I~l~~ 230 (507)
.+.+++.|-.. +.+..|-.+- -+..++.|+-..-|++. ...|.|+|.|+.. ..|++|+..+
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~t~-------~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~ 457 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLPTP-------FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST 457 (641)
T ss_pred CCceeeeeccccccchhhhcCCCcc-------CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC
Confidence 88888887433 2222221111 12234444333333321 2345799998754 5778888776
Q ss_pred Ccee
Q 010579 231 DDCS 234 (507)
Q Consensus 231 ~~~~ 234 (507)
..|.
T Consensus 458 aSvv 461 (641)
T KOG0772|consen 458 ASVV 461 (641)
T ss_pred ceEE
Confidence 5543
No 85
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=83.50 E-value=4.9 Score=42.12 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=41.4
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA 159 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA 159 (507)
..|++..+. +|.|||+|++.+.|.+++++ .|+...++--+ ..|.||++. |++.|.
T Consensus 203 smPhSPRWh-dgrLwvldsgtGev~~vD~~---~G~~e~Va~vp----------------G~~rGL~f~--G~llvV 257 (335)
T TIGR03032 203 SMPHSPRWY-QGKLWLLNSGRGELGYVDPQ---AGKFQPVAFLP----------------GFTRGLAFA--GDFAFV 257 (335)
T ss_pred cCCcCCcEe-CCeEEEEECCCCEEEEEcCC---CCcEEEEEECC----------------CCCccccee--CCEEEE
Confidence 367777764 68999999999999999987 36666665332 268899998 776655
No 86
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=82.42 E-value=9.8 Score=38.13 Aligned_cols=114 Identities=13% Similarity=0.234 Sum_probs=58.5
Q ss_pred EEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc----EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 87 SVAVSPSGELLVLDSENSNIYKISTSLSPYSRP----KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 87 gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i----~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
.|++++.|.||..+. ++.++|.....+..... ...+| ....+...-|..+++|.||.-+..
T Consensus 85 ~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG--------------~~GW~~f~~vfa~~~GvLY~i~~d 149 (229)
T PF14517_consen 85 FIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIG--------------GTGWNDFDAVFAGPNGVLYAITPD 149 (229)
T ss_dssp EEEE-TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE---------------SSGGGEEEEEE-TTS-EEEEETT
T ss_pred EEEecCCccEEEecc-ccceeeccCCCccCcchhhccceecc--------------cCCCccceEEEeCCCccEEEEcCC
Confidence 899999999998876 57888887653221111 01111 112455678999999999999965
Q ss_pred CCeEEEEc-CCC-------cEEEec-CcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579 163 NMAIRKIS-DTG-------VTTIAG-GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 233 (507)
Q Consensus 163 N~rIrk~d-~~G-------VstIaG-G~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~ 233 (507)
. |+.+.. +.+ .+.+++ +. ...+.-|. ..+++.||.+| .+++|.+-......|
T Consensus 150 g-~~~~~~~p~~~~~~W~~~s~~v~~~g----------------w~~~~~i~-~~~~g~L~~V~-~~G~lyr~~~p~~~~ 210 (229)
T PF14517_consen 150 G-RLYRRYRPDGGSDRWLSGSGLVGGGG----------------WDSFHFIF-FSPDGNLWAVK-SNGKLYRGRPPQNGC 210 (229)
T ss_dssp E--EEEE---SSTT--HHHH-EEEESSS----------------GGGEEEEE-E-TTS-EEEE--ETTEEEEES---STT
T ss_pred C-ceEEeCCCCCCCCccccccceeccCC----------------cccceEEe-eCCCCcEEEEe-cCCEEeccCCcccCC
Confidence 5 666663 221 233322 21 12234454 57889999994 578888777665554
Q ss_pred e
Q 010579 234 S 234 (507)
Q Consensus 234 ~ 234 (507)
.
T Consensus 211 ~ 211 (229)
T PF14517_consen 211 P 211 (229)
T ss_dssp -
T ss_pred c
Confidence 3
No 87
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=82.25 E-value=2.8 Score=30.01 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=18.4
Q ss_pred CCeeEEEEcCCCcEEEEeCCCC
Q 010579 83 MEPFSVAVSPSGELLVLDSENS 104 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~ 104 (507)
..+.+|++|++|++||+-..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 4699999999999999876543
No 88
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.84 E-value=4.1 Score=28.44 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=27.1
Q ss_pred CCCeEEEEeCCCCeEEEEECCCCceee-CCCCCccceEEE
Q 010579 209 SSCSLLVIDRGNQAIREIQLHDDDCSD-NYDDTFHLGIFV 247 (507)
Q Consensus 209 ~~G~LyVaD~gn~rIr~I~l~~~~~~~-~~~~G~p~gIa~ 247 (507)
+.+.|||++.+.+.|..|++....... ......|.+|++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 456899999999999999987655433 222335666654
No 89
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=81.70 E-value=95 Score=34.79 Aligned_cols=151 Identities=20% Similarity=0.232 Sum_probs=84.9
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc---------cEEEecCCCC---ccccC----------CCCccc--
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR---------PKLVAGSPEG---YYGHV----------DGRPRG-- 139 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~---------i~~vaG~~~G---~~G~~----------dG~~~~-- 139 (507)
.=+.+++.+||.-+++-+..++|..++.......+ +..++-...+ ..|-. +|....
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~ 401 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV 401 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence 45688899988877777777889888865332111 1111111101 01110 111111
Q ss_pred ccC-CCcceEEEcCCCCEEEEeCCCCeEEEEc-CCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEe
Q 010579 140 ARM-NHPKGLAVDDRGNIYIADTMNMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVID 217 (507)
Q Consensus 140 a~f-n~P~GIaVd~dGnIYVADs~N~rIrk~d-~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD 217 (507)
..| ..|.++|+.++|.+.|.-...+ |..+. ..+++++-- -..|.++| +.++++....-
T Consensus 402 ~~lg~QP~~lav~~d~~~avv~~~~~-iv~l~~~~~~~~~~~------------------~y~~s~vA-v~~~~~~vaVG 461 (603)
T KOG0318|consen 402 VKLGSQPKGLAVLSDGGTAVVACISD-IVLLQDQTKVSSIPI------------------GYESSAVA-VSPDGSEVAVG 461 (603)
T ss_pred eecCCCceeEEEcCCCCEEEEEecCc-EEEEecCCcceeecc------------------ccccceEE-EcCCCCEEEEe
Confidence 133 5899999999987555544333 55555 444666521 12566777 56777777776
Q ss_pred CCCCeEEEEECCCCc-eee---CCCCCccceEEEEecceeE
Q 010579 218 RGNQAIREIQLHDDD-CSD---NYDDTFHLGIFVLVAAAFF 254 (507)
Q Consensus 218 ~gn~rIr~I~l~~~~-~~~---~~~~G~p~gIa~~~~a~~~ 254 (507)
-..++|+.+++.++. |.. ....+-++.|+......|+
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl 502 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL 502 (603)
T ss_pred cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence 667789999988855 322 2333445555555444443
No 90
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=80.95 E-value=6.3 Score=28.64 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=31.4
Q ss_pred CeEEEEeCCCC-eEEEEECCCCceee--CCCCCccceEEEE
Q 010579 211 CSLLVIDRGNQ-AIREIQLHDDDCSD--NYDDTFHLGIFVL 248 (507)
Q Consensus 211 G~LyVaD~gn~-rIr~I~l~~~~~~~--~~~~G~p~gIa~~ 248 (507)
++||-+|.+.+ .|.+.++++..... ......|.|||++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence 57999999999 99999999987544 4456679999986
No 91
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=80.58 E-value=42 Score=36.21 Aligned_cols=119 Identities=19% Similarity=0.205 Sum_probs=76.9
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCe
Q 010579 86 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA 165 (507)
Q Consensus 86 ~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~r 165 (507)
-.+.|.|+|...++-++...++.+|.++ .++.-.+ .|+ -+.-.-|+..|||....+-+.++.
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~T---eTp~~t~------KgH---------~~WVlcvawsPDgk~iASG~~dg~ 180 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDT---ETPLFTC------KGH---------KNWVLCVAWSPDGKKIASGSKDGS 180 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCC---CCcceee------cCC---------ccEEEEEEECCCcchhhccccCCe
Confidence 3678899999999999999999999873 2222211 222 356668999999999999999999
Q ss_pred EEEEcCC--C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579 166 IRKISDT--G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 235 (507)
Q Consensus 166 Irk~d~~--G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~ 235 (507)
|+..|+. + ...+.|-+.. ..+--..|..+ ++.++++...+..+.|+..+.....|..
T Consensus 181 I~lwdpktg~~~g~~l~gH~K~----------It~Lawep~hl---~p~~r~las~skDg~vrIWd~~~~~~~~ 241 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRALRGHKKW----------ITALAWEPLHL---VPPCRRLASSSKDGSVRIWDTKLGTCVR 241 (480)
T ss_pred EEEecCCCCCcccccccCcccc----------eeEEeeccccc---CCCccceecccCCCCEEEEEccCceEEE
Confidence 9999943 2 2333321110 00111234333 3556666666667777777777666654
No 92
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=80.38 E-value=7.9 Score=43.43 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=51.0
Q ss_pred cccCCCcceEEEcC-CCCEEEEeCCCC----------------eEEEEc-CCC----------cEEEecCcccCCCCCCC
Q 010579 139 GARMNHPKGLAVDD-RGNIYIADTMNM----------------AIRKIS-DTG----------VTTIAGGKWSRGVGHVD 190 (507)
Q Consensus 139 ~a~fn~P~GIaVd~-dGnIYVADs~N~----------------rIrk~d-~~G----------VstIaGG~~g~~~G~~d 190 (507)
.+.|..|.+|++.+ .|.+|++.+.|. .|.++- .++ +...+|.......+. .
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~-~ 491 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA-S 491 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc-c
Confidence 46799999999998 577999999876 244443 221 233333221111111 1
Q ss_pred CCccCccCCCCceEEEEcCCCeEEEEeCCCC
Q 010579 191 GPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ 221 (507)
Q Consensus 191 g~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~ 221 (507)
.......|+.|.+|+ +|+.|+|||+.-+++
T Consensus 492 ~~~~~~~f~~PDnl~-fD~~GrLWi~TDg~~ 521 (616)
T COG3211 492 ANINANWFNSPDNLA-FDPWGRLWIQTDGSG 521 (616)
T ss_pred cCcccccccCCCceE-ECCCCCEEEEecCCC
Confidence 122235689999998 599999999865543
No 93
>PRK04922 tolB translocation protein TolB; Provisional
Probab=79.46 E-value=94 Score=33.34 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=38.6
Q ss_pred EEEEcCCCc-EEEE-eC-CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-E-EEEeC
Q 010579 87 SVAVSPSGE-LLVL-DS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I-YIADT 161 (507)
Q Consensus 87 gIaVd~dG~-LYVa-Ds-~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-I-YVADs 161 (507)
.++++|||. |+++ +. ++..|++++..+ +.+..+.... ......++++||. | |++|.
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~---g~~~~lt~~~----------------~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGS---RQLTRLTNHF----------------GIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCC---CCeEECccCC----------------CCccceEECCCCCEEEEEECC
Confidence 568899986 5444 32 345899998863 3333332110 0123467888887 4 44443
Q ss_pred C-CCeEEEEcCC
Q 010579 162 M-NMAIRKISDT 172 (507)
Q Consensus 162 ~-N~rIrk~d~~ 172 (507)
. +..|..++.+
T Consensus 313 ~g~~~iy~~dl~ 324 (433)
T PRK04922 313 GGRPQIYRVAAS 324 (433)
T ss_pred CCCceEEEEECC
Confidence 3 4468888743
No 94
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=78.70 E-value=89 Score=32.66 Aligned_cols=69 Identities=25% Similarity=0.314 Sum_probs=37.5
Q ss_pred eEEEEcCCCc-EEEEeCC--CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-E-EEEe
Q 010579 86 FSVAVSPSGE-LLVLDSE--NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I-YIAD 160 (507)
Q Consensus 86 ~gIaVd~dG~-LYVaDs~--n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-I-YVAD 160 (507)
..++++|||. |+++... +..|+.++..+ +....+.... + .....++++||. | |++|
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~---~~~~~l~~~~--------~--------~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG---KQLTRLTNGP--------G--------IDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCC---CCEEECCCCC--------C--------CCCCEEECCCCCEEEEEEC
Confidence 3578899986 6665433 45798888763 2222222110 0 112345677776 4 3444
Q ss_pred CC-CCeEEEEcCCC
Q 010579 161 TM-NMAIRKISDTG 173 (507)
Q Consensus 161 s~-N~rIrk~d~~G 173 (507)
.. ...|.+++.++
T Consensus 298 ~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 298 RGGSPQIYMMDADG 311 (417)
T ss_pred CCCCceEEEEECCC
Confidence 33 44788887543
No 95
>PRK05137 tolB translocation protein TolB; Provisional
Probab=78.67 E-value=99 Score=33.15 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=40.4
Q ss_pred EEEEcCCCc-EEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-E-EEEeC
Q 010579 87 SVAVSPSGE-LLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I-YIADT 161 (507)
Q Consensus 87 gIaVd~dG~-LYVaDs--~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-I-YVADs 161 (507)
..+++|||. |+++-. ++..|++++..+ +....+.... + .....++++||. | |++|.
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~---~~~~~Lt~~~--------~--------~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRS---GTTTRLTDSP--------A--------IDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCC---CceEEccCCC--------C--------ccCceeEcCCCCEEEEEECC
Confidence 567889986 444432 346799988763 3333332110 0 122467788887 4 44443
Q ss_pred -CCCeEEEEcCCC--cEEE
Q 010579 162 -MNMAIRKISDTG--VTTI 177 (507)
Q Consensus 162 -~N~rIrk~d~~G--VstI 177 (507)
+...|++++.++ +..+
T Consensus 311 ~g~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 311 SGSPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCCCeEEEEECCCCCeEEe
Confidence 245788888554 4544
No 96
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.61 E-value=9.3 Score=26.58 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.7
Q ss_pred CcEEEEeCCCCeEEEEeCC
Q 010579 94 GELLVLDSENSNIYKISTS 112 (507)
Q Consensus 94 G~LYVaDs~n~rI~ki~~~ 112 (507)
+.|||++...+.|..|+..
T Consensus 4 ~~lyv~~~~~~~v~~id~~ 22 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTA 22 (42)
T ss_pred CEEEEEeCCCCEEEEEECC
Confidence 3599999999999999975
No 97
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=77.65 E-value=76 Score=32.96 Aligned_cols=113 Identities=11% Similarity=0.116 Sum_probs=76.1
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 164 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~ 164 (507)
=.++++.+||+..++-+....++.+|..++. ....+.|.. ..-.++++++|..-.|+-+..+
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~--~t~~f~GH~----------------~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGE--STRRFVGHT----------------KDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCc--EEEEEEecC----------------CceEEEEecCCCceeecCCCcc
Confidence 3478899999999999999999999987431 223444442 2345899999988899988888
Q ss_pred eEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC-CCCeEEEEECCC
Q 010579 165 AIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-GNQAIREIQLHD 230 (507)
Q Consensus 165 rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~-gn~rIr~I~l~~ 230 (507)
.|...+.-| ..++..+.. -..-.+|.+.+...+.+|+.. ....|+..++++
T Consensus 128 Tiklwnt~g~ck~t~~~~~~---------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSH---------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred eeeeeeecccEEEEEecCCC---------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 899999766 566643210 124456777666545544444 445556666654
No 98
>PRK04922 tolB translocation protein TolB; Provisional
Probab=77.57 E-value=1.1e+02 Score=32.92 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=38.5
Q ss_pred eEEEEcCCCc-EE-EEeCC-CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC
Q 010579 86 FSVAVSPSGE-LL-VLDSE-NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT 161 (507)
Q Consensus 86 ~gIaVd~dG~-LY-VaDs~-n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs 161 (507)
..+++++||. |+ .+|.. +..|++++.++ +....+.-.+ .....+++++||+ |+++..
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~---g~~~~lt~~g----------------~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAASG---GSAERLTFQG----------------NYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCC---CCeEEeecCC----------------CCccCEEECCCCCEEEEEEC
Confidence 3568889886 44 44432 34688888763 3333322110 0123578889987 555543
Q ss_pred C--CCeEEEEcCC
Q 010579 162 M--NMAIRKISDT 172 (507)
Q Consensus 162 ~--N~rIrk~d~~ 172 (507)
. ..+|.+++..
T Consensus 356 ~~~~~~I~v~d~~ 368 (433)
T PRK04922 356 SGGQYRIAVMDLS 368 (433)
T ss_pred CCCceeEEEEECC
Confidence 3 3468888843
No 99
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=77.55 E-value=20 Score=38.07 Aligned_cols=129 Identities=17% Similarity=0.177 Sum_probs=79.7
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCC---------Cc--cccCCCCcccccCCCcceE-----
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPE---------GY--YGHVDGRPRGARMNHPKGL----- 148 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~---------G~--~G~~dG~~~~a~fn~P~GI----- 148 (507)
-.-++.+-+..+.|+-+..+.|++++-+... .+.++++.-+ |+ ....|-.+.-..|..|..|
T Consensus 238 GSVLCLqyd~rviisGSSDsTvrvWDv~tge--~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrV 315 (499)
T KOG0281|consen 238 GSVLCLQYDERVIVSGSSDSTVRVWDVNTGE--PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRV 315 (499)
T ss_pred CcEEeeeccceEEEecCCCceEEEEeccCCc--hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHH
Confidence 3345666677789998888999999877422 1222222211 11 0111333333445555432
Q ss_pred ---------EEcCCCCEEEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEE
Q 010579 149 ---------AVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI 216 (507)
Q Consensus 149 ---------aVd~dGnIYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVa 216 (507)
.||=+..+.|+-++...|++.+.+. |.|+.|-+ .|||..--.++|.|.
T Consensus 316 LvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHk--------------------RGIAClQYr~rlvVS 375 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHK--------------------RGIACLQYRDRLVVS 375 (499)
T ss_pred HhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhccc--------------------ccceehhccCeEEEe
Confidence 2333445777777788888888544 66775533 345666678899999
Q ss_pred eCCCCeEEEEECCCCceee
Q 010579 217 DRGNQAIREIQLHDDDCSD 235 (507)
Q Consensus 217 D~gn~rIr~I~l~~~~~~~ 235 (507)
-+..+.||.++.+.+.|..
T Consensus 376 GSSDntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 376 GSSDNTIRLWDIECGACLR 394 (499)
T ss_pred cCCCceEEEEeccccHHHH
Confidence 9999999999988777654
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=77.10 E-value=35 Score=39.48 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=67.8
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
--++++|||.-.+.++-....+|++|+...+ ...++|-|+. ++ +| .+.-+..||.|...++...+
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sg--Kq~k~FKgs~----~~-eG--------~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESG--KQVKSFKGSR----DH-EG--------DLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEecccc--ceeeeecccc----cC-CC--------ceEEEEECCCccEEEEeecC
Confidence 3578999998777777777778888876521 2334444432 21 23 46678899988544444445
Q ss_pred CeEEEEc--CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579 164 MAIRKIS--DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH 229 (507)
Q Consensus 164 ~rIrk~d--~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~ 229 (507)
..+-.+| ++. |.+..|-.. .-.|+.+ ..+|.=+|.=++.++|.+..+.
T Consensus 663 ktl~~~Df~sgEcvA~m~GHsE-----------------~VTG~kF-~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGHSE-----------------AVTGVKF-LNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CceEEEEeccchhhhhhcCcch-----------------heeeeee-cccchhheeecCCceEEEEECc
Confidence 5666666 333 444433111 1235554 5667777777777887777653
No 101
>PTZ00420 coronin; Provisional
Probab=77.07 E-value=95 Score=35.26 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=71.4
Q ss_pred CeeEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCC-CccccCCCCcccccCCCcceEEEcCCCCE-EEEe
Q 010579 84 EPFSVAVSPS-GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPE-GYYGHVDGRPRGARMNHPKGLAVDDRGNI-YIAD 160 (507)
Q Consensus 84 ~P~gIaVd~d-G~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~-G~~G~~dG~~~~a~fn~P~GIaVd~dGnI-YVAD 160 (507)
.-..|+++|+ ++++++-+..+.|+.++..... .....+. ... -..|+ -..-..|++++++.. +++=
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~-~~~~~i~-~p~~~L~gH---------~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHND-ESVKEIK-DPQCILKGH---------KKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCC-ccccccc-cceEEeecC---------CCcEEEEEECCCCCeEEEEE
Confidence 4568899985 7888888888999999875210 0000000 000 00111 123458899998864 4454
Q ss_pred CCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579 161 TMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 234 (507)
Q Consensus 161 s~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~ 234 (507)
+..+.|+.+|.. + +..+... .....+++ ..+|.++++-...+.|+.+++....+.
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~------------------~~V~Slsw-spdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMP------------------KKLSSLKW-NIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecC------------------CcEEEEEE-CCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 557788888843 3 2222110 02345553 667788777767788888888876554
No 102
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.90 E-value=29 Score=40.15 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=73.7
Q ss_pred CeeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 84 EPFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 84 ~P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
.=+.|+|.| |.+.||+-+-.++|+.++... .++..... .+ .--+.||+.|||...|.=+.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d---~~Vv~W~D---------------l~-~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISD---KKVVDWND---------------LR-DLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCc---CeeEeehh---------------hh-hhheeEEeccCCceEEEEEe
Confidence 456889999 778999999889999998651 12211110 01 24568999999999999999
Q ss_pred CCeEEEEcCCCcEEEec----CcccCCCCCCCCCccCccCCCCceEEEEcCCC-eEEEEeCCCCeEEEEECCC
Q 010579 163 NMAIRKISDTGVTTIAG----GKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 163 N~rIrk~d~~GVstIaG----G~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~LyVaD~gn~rIr~I~l~~ 230 (507)
++..+.+++.|.....- -..++ .++=..-+|+-+.+.+- .|+|+ +...|||.+++..
T Consensus 472 ~G~C~fY~t~~lk~~~~~~I~~~~~K----------k~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLVSDFHIRLHNKK----------KKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRD 533 (712)
T ss_pred ccEEEEEEccCCeEEEeeeEeeccCc----------cccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccc
Confidence 99999999888333221 01000 11111334555544433 35555 4468999999844
No 103
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=76.22 E-value=1.1e+02 Score=33.67 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=27.2
Q ss_pred CCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECC
Q 010579 190 DGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLH 229 (507)
Q Consensus 190 dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~ 229 (507)
+-|..+..+..+.++++.+..|.|-|.+. .+|+..+.++
T Consensus 474 NfP~~n~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~kL~ 512 (514)
T KOG2055|consen 474 NFPTSNTKVGHVTCMAFSPNSGYLAVGNE-AGRVHLFKLH 512 (514)
T ss_pred cCCCCCCcccceEEEEecCCCceEEeecC-CCceeeEeec
Confidence 33556677888999998766777777665 4677766654
No 104
>PRK04792 tolB translocation protein TolB; Provisional
Probab=76.02 E-value=1.2e+02 Score=32.85 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=38.8
Q ss_pred eeEEEEcCCCc-EE-EEeC-CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEe
Q 010579 85 PFSVAVSPSGE-LL-VLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD 160 (507)
Q Consensus 85 P~gIaVd~dG~-LY-VaDs-~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVAD 160 (507)
....++++||. |+ .++. ++..|++++..+ +....+.-. + ....+.++++||+ |+++.
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~---g~~~~Lt~~---------g-------~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS---GKVSRLTFE---------G-------EQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCC---CCEEEEecC---------C-------CCCcCeeECCCCCEEEEEE
Confidence 34567888886 43 3443 346788888763 333333211 0 0112457888887 65654
Q ss_pred CC--CCeEEEEcCCC
Q 010579 161 TM--NMAIRKISDTG 173 (507)
Q Consensus 161 s~--N~rIrk~d~~G 173 (507)
.. ..+|.+++.++
T Consensus 369 ~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 369 RTNGKFNIARQDLET 383 (448)
T ss_pred ecCCceEEEEEECCC
Confidence 43 34677788443
No 105
>smart00284 OLF Olfactomedin-like domains.
Probab=75.77 E-value=98 Score=31.59 Aligned_cols=166 Identities=12% Similarity=0.129 Sum_probs=84.2
Q ss_pred CCCCCceeecceEeEEEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc--EEEEeC
Q 010579 24 ASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE--LLVLDS 101 (507)
Q Consensus 24 a~~~pa~ivsG~l~~va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~--LYVaDs 101 (507)
...+...+..|.++ ..-.....|.++|+.+.++.+-..+ ...++.-...- .-.+..=.++|+|++|- ||.+..
T Consensus 74 ~~GtG~VVYngslY-Y~~~~s~~iiKydL~t~~v~~~~~L--p~a~y~~~~~Y--~~~~~sdiDlAvDE~GLWvIYat~~ 148 (255)
T smart00284 74 GQGTGVVVYNGSLY-FNKFNSHDICRFDLTTETYQKEPLL--NGAGYNNRFPY--AWGGFSDIDLAVDENGLWVIYATEQ 148 (255)
T ss_pred cccccEEEECceEE-EEecCCccEEEEECCCCcEEEEEec--Ccccccccccc--ccCCCccEEEEEcCCceEEEEeccC
Confidence 34455667888888 4556668899999998876521110 01121100000 00112445899999873 555555
Q ss_pred CCCeEE--EEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC---CCeEE-EEcCCC-c
Q 010579 102 ENSNIY--KISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM---NMAIR-KISDTG-V 174 (507)
Q Consensus 102 ~n~rI~--ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~---N~rIr-k~d~~G-V 174 (507)
.+++|. |+++.. =.+.-..-. ++.-. ... +...+ =|.||++++. ..+|. .+|+.+ .
T Consensus 149 ~~g~ivvSkLnp~t---L~ve~tW~T--~~~k~--------sa~--naFmv--CGvLY~~~s~~~~~~~I~yayDt~t~~ 211 (255)
T smart00284 149 NAGKIVISKLNPAT---LTIENTWIT--TYNKR--------SAS--NAFMI--CGILYVTRSLGSKGEKVFYAYDTNTGK 211 (255)
T ss_pred CCCCEEEEeeCccc---ceEEEEEEc--CCCcc--------ccc--ccEEE--eeEEEEEccCCCCCcEEEEEEECCCCc
Confidence 556665 677641 111111111 11000 000 12222 2889999973 33444 466443 1
Q ss_pred EEEecCcccCCCCCCCCCccCccCCCC----ceEEEEcCCCeEEEEeCCCCeEEEEE
Q 010579 175 TTIAGGKWSRGVGHVDGPSEDAKFSND----FDVVYVGSSCSLLVIDRGNQAIREIQ 227 (507)
Q Consensus 175 stIaGG~~g~~~G~~dg~~~~a~f~~P----~gIa~vd~~G~LyVaD~gn~rIr~I~ 227 (507)
.. ..+..|.++ ..|-+-+.+..||+-|.+.-.+..+.
T Consensus 212 ~~----------------~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng~~l~Y~v~ 252 (255)
T smart00284 212 EG----------------HLDIPFENMYEYISMLDYNPNDRKLYAWNNGHLVHYDIA 252 (255)
T ss_pred cc----------------eeeeeeccccccceeceeCCCCCeEEEEeCCeEEEEEEE
Confidence 00 011122233 23667788999999997766555554
No 106
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=74.23 E-value=1.5e+02 Score=34.74 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=73.9
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
..-..++..|||.+.++-...++|.+++... |-..+.... + =+.-+++.+..+|+..++-+.
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---gfC~vTFte------H---------ts~Vt~v~f~~~g~~llssSL 412 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQS---GFCFVTFTE------H---------TSGVTAVQFTARGNVLLSSSL 412 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccC---ceEEEEecc------C---------CCceEEEEEEecCCEEEEeec
Confidence 3566889999999999999999999999762 222211111 0 123458999999999999999
Q ss_pred CCeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC-CCCeEEEEECCCC
Q 010579 163 NMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-GNQAIREIQLHDD 231 (507)
Q Consensus 163 N~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~-gn~rIr~I~l~~~ 231 (507)
.++||.+|- .. ..|+..- ...+| .+|+ +|+.|.|.+|-. .+-.|...+..++
T Consensus 413 DGtVRAwDlkRYrNfRTft~P-------------~p~Qf---scva-vD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 413 DGTVRAWDLKRYRNFRTFTSP-------------EPIQF---SCVA-VDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred CCeEEeeeecccceeeeecCC-------------Cceee---eEEE-EcCCCCEEEeeccceEEEEEEEeecC
Confidence 999999994 33 4444321 11223 2555 577777666643 3335555555443
No 107
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.95 E-value=1.2e+02 Score=31.78 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=78.3
Q ss_pred CCCCCeeEEEEcCCC-cEEEEeCCCCeE-----EEEeCCCCCCCccE-EEecCCCCccccCCCCcccccCCCcceEEEcC
Q 010579 80 KFGMEPFSVAVSPSG-ELLVLDSENSNI-----YKISTSLSPYSRPK-LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD 152 (507)
Q Consensus 80 ~~~~~P~gIaVd~dG-~LYVaDs~n~rI-----~ki~~~g~~~g~i~-~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~ 152 (507)
..+..|+.|.+.+|| .|.|+.-+=..- .|++.+.. +.+ +++....|..-..-....+-.-+.-.-|+++.
T Consensus 96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM---~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~ 172 (305)
T PF07433_consen 96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM---QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG 172 (305)
T ss_pred CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc---CCceEEEecCCCceeeeeecCccccccceeeEEecC
Confidence 345789999999999 788886542110 13333211 111 11111111100000000011234567899999
Q ss_pred CCCEEEEeCCCCe-------EEEEcCCC-cEEEecCcccCCCCCCCCCc-cCccC-CCCceEEEEcCCCeEEEEeCCCCe
Q 010579 153 RGNIYIADTMNMA-------IRKISDTG-VTTIAGGKWSRGVGHVDGPS-EDAKF-SNDFDVVYVGSSCSLLVIDRGNQA 222 (507)
Q Consensus 153 dGnIYVADs~N~r-------Irk~d~~G-VstIaGG~~g~~~G~~dg~~-~~a~f-~~P~gIa~vd~~G~LyVaD~gn~r 222 (507)
+|.++++--.... |-.+..++ +..+. .+. ....| ++--+|++.++.+.+.++...+++
T Consensus 173 ~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~------------~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 173 DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLP------------APEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred CCcEEEEEecCCCCCccCCeEEEEcCCCcceecc------------CChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 9999998543211 22222222 22111 111 11222 234577764444567788889999
Q ss_pred EEEEECCCCceeeCCCCCccceEEEEecc
Q 010579 223 IREIQLHDDDCSDNYDDTFHLGIFVLVAA 251 (507)
Q Consensus 223 Ir~I~l~~~~~~~~~~~G~p~gIa~~~~a 251 (507)
+..++..+..+.......-.+|++...+.
T Consensus 241 ~~~~d~~tg~~~~~~~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPLPDACGVAPTDDG 269 (305)
T ss_pred EEEEECCCCCEeeccccCceeeeeecCCc
Confidence 99998877666543332223456655543
No 108
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.67 E-value=1.2e+02 Score=32.78 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=68.2
Q ss_pred CCeeEEEEcCC--CcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccC-CCcceEEEcCCCC-EEE
Q 010579 83 MEPFSVAVSPS--GELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARM-NHPKGLAVDDRGN-IYI 158 (507)
Q Consensus 83 ~~P~gIaVd~d--G~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~f-n~P~GIaVd~dGn-IYV 158 (507)
..+++|.|-+. ..-|++-+..|.++.++... ++ ..++--. -+ +.-..++.+++|+ ||+
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~---qR-RPV~~fd--------------~~E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRH---QR-RPVAQFD--------------FLENPISSTGLTPSGNFIYT 264 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcc---cC-cceeEec--------------cccCcceeeeecCCCcEEEE
Confidence 46788888775 67888888899999999862 21 1111100 01 2234688889998 888
Q ss_pred EeCCCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 159 ADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 159 ADs~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
+|+ ...+-.||..+-.++.-+ ..|.. ..+.+|.. .+.+.++..-.-..-||.++..+
T Consensus 265 gn~-~g~l~~FD~r~~kl~g~~--------~kg~t-----Gsirsih~-hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 265 GNT-KGQLAKFDLRGGKLLGCG--------LKGIT-----GSIRSIHC-HPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ecc-cchhheecccCceeeccc--------cCCcc-----CCcceEEE-cCCCceEEeeccceeEEEeeccc
Confidence 887 446889997663332100 11111 14566663 45444544444445677777765
No 109
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=73.46 E-value=27 Score=40.22 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=70.6
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEE
Q 010579 88 VAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIR 167 (507)
Q Consensus 88 IaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIr 167 (507)
+.|.|+.+...+.+..+.|+.++...+ ..++++.|.- ..-..|++.++|...++=...+.|.
T Consensus 541 v~FHPNs~Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH~----------------~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSDRTVRLWDVSTG--NSVRIFTGHK----------------GPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred EEECCcccccccCCCCceEEEEEcCCC--cEEEEecCCC----------------CceEEEEEcCCCceEeecccCCcEE
Confidence 566676666666666677888876521 2244444321 1345799999987666655677788
Q ss_pred EEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579 168 KISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 234 (507)
Q Consensus 168 k~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~ 234 (507)
..|.. | +..+.|- . +.-..|.+ ..+|.++|++.+++.|+..|+....+.
T Consensus 603 iWDl~~~~~v~~l~~H-t----------------~ti~SlsF-S~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGH-T----------------GTIYSLSF-SRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred EEEcCCCcchhhhhcc-c----------------CceeEEEE-ecCCCEEEecCCCCeEEEEEchhhccc
Confidence 88843 3 3333221 0 12235554 789999999999999999998764443
No 110
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=73.32 E-value=54 Score=35.48 Aligned_cols=117 Identities=14% Similarity=0.258 Sum_probs=66.7
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
.-+.+.+.-||.++++-+...+|+++++- .+++ +.-. .+..|. ..+..|.+ .+|.|+.+-...
T Consensus 175 ~i~S~sfn~dGs~l~TtckDKkvRv~dpr---~~~~--v~e~-~~heG~----------k~~Raifl-~~g~i~tTGfsr 237 (472)
T KOG0303|consen 175 MVYSMSFNRDGSLLCTTCKDKKVRVIDPR---RGTV--VSEG-VAHEGA----------KPARAIFL-ASGKIFTTGFSR 237 (472)
T ss_pred eEEEEEeccCCceeeeecccceeEEEcCC---CCcE--eeec-ccccCC----------CcceeEEe-ccCceeeecccc
Confidence 44677888899999999999999999985 2322 2211 122221 23334444 567755544332
Q ss_pred ---CeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEE---EEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579 164 ---MAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVV---YVGSSCSLLVIDRGNQAIREIQLHDDD 232 (507)
Q Consensus 164 ---~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa---~vd~~G~LyVaD~gn~rIr~I~l~~~~ 232 (507)
..|-..+++-+.. |.....|..-+||. ++++.+-||++-.|.+.||.+....+.
T Consensus 238 ~seRq~aLwdp~nl~e---------------P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 238 MSERQIALWDPNNLEE---------------PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccceeccCcccccC---------------cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2233333322110 11111222223333 356677899999999999999876654
No 111
>PTZ00421 coronin; Provisional
Probab=73.25 E-value=1.5e+02 Score=32.99 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=49.5
Q ss_pred CeeEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 84 EPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 84 ~P~gIaVd~dG-~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
.-..|++.|++ +++++-+..+.|+.++... +....... ++ -..-..|++.++|+++++-+.
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t---g~~~~~l~------~h---------~~~V~sla~spdG~lLatgs~ 188 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVER---GKAVEVIK------CH---------SDQITSLEWNLDGSLLCTTSK 188 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCC---CeEEEEEc------CC---------CCceEEEEEECCCCEEEEecC
Confidence 34678899865 6777777788999999762 32221111 11 123468999999999888888
Q ss_pred CCeEEEEcCC
Q 010579 163 NMAIRKISDT 172 (507)
Q Consensus 163 N~rIrk~d~~ 172 (507)
++.|+.+|..
T Consensus 189 Dg~IrIwD~r 198 (493)
T PTZ00421 189 DKKLNIIDPR 198 (493)
T ss_pred CCEEEEEECC
Confidence 8999999943
No 112
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=72.93 E-value=1.7e+02 Score=32.96 Aligned_cols=117 Identities=16% Similarity=0.201 Sum_probs=66.9
Q ss_pred CCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEE
Q 010579 80 KFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIA 159 (507)
Q Consensus 80 ~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVA 159 (507)
..+.+|.++|+.++|.+.|+-+.. .|..+..- +.+..+- .+ -.|..+|+.++|+....
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~-~iv~l~~~----~~~~~~~------~~-----------y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACIS-DIVLLQDQ----TKVSSIP------IG-----------YESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecC-cEEEEecC----Ccceeec------cc-----------cccceEEEcCCCCEEEE
Confidence 345799999999998766555443 45555422 1111111 01 25789999999986665
Q ss_pred eCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 010579 160 DTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDC 233 (507)
Q Consensus 160 Ds~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~ 233 (507)
=.....|+++.-.| ..-.+- .......+..|++ .+++..+++---++.|..++......
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~--------------~~~h~a~iT~vay-Spd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAK--------------LLEHRAAITDVAY-SPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred ecccceEEEEEecCCcccceee--------------eecccCCceEEEE-CCCCcEEEEeccCCcEEEEEcccCce
Confidence 54455566666444 111100 0011224567886 55565555555577888888776554
No 113
>PRK03629 tolB translocation protein TolB; Provisional
Probab=72.38 E-value=1.5e+02 Score=32.02 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=42.8
Q ss_pred EEEEcCCCc-EEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC--EEEEeC
Q 010579 87 SVAVSPSGE-LLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN--IYIADT 161 (507)
Q Consensus 87 gIaVd~dG~-LYVaDs--~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn--IYVADs 161 (507)
.++++|||. |+++.. ++.+|+.++.++ +.+..+.... ......++++||+ +|++|.
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~t---g~~~~lt~~~----------------~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQIRQVTDGR----------------SNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCC---CCEEEccCCC----------------CCcCceEECCCCCEEEEEeCC
Confidence 468999997 655432 345799998863 3333332110 1224578889997 456664
Q ss_pred C-CCeEEEEcCCC--cEEE
Q 010579 162 M-NMAIRKISDTG--VTTI 177 (507)
Q Consensus 162 ~-N~rIrk~d~~G--VstI 177 (507)
. ..+|.+++.++ +..+
T Consensus 308 ~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 308 AGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred CCCceEEEEECCCCCeEEe
Confidence 3 45788888544 4444
No 114
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=72.25 E-value=53 Score=36.16 Aligned_cols=133 Identities=23% Similarity=0.273 Sum_probs=61.3
Q ss_pred eeEEEEcCCCcEEEEeCC-------------CCeEEEEeCCCCCCCccEEEecCCC-----Cc-------cccCCCCccc
Q 010579 85 PFSVAVSPSGELLVLDSE-------------NSNIYKISTSLSPYSRPKLVAGSPE-----GY-------YGHVDGRPRG 139 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~-------------n~rI~ki~~~g~~~g~i~~vaG~~~-----G~-------~G~~dG~~~~ 139 (507)
=+++...++|++++.-.. ...|..++.+ |.+.-..--.. .. .+...+....
T Consensus 192 HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~t----G~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~ 267 (477)
T PF05935_consen 192 HHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPT----GEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG 267 (477)
T ss_dssp -S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TT----S-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred ccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCC----CCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence 478889999986654441 3678888854 44433221110 00 0111111112
Q ss_pred ccCCCcceEEEcC-CCCEEEEeCCCCeEEEEc-CCC-cEEEecCcccCCCCCC---------CC------CccCccCCCC
Q 010579 140 ARMNHPKGLAVDD-RGNIYIADTMNMAIRKIS-DTG-VTTIAGGKWSRGVGHV---------DG------PSEDAKFSND 201 (507)
Q Consensus 140 a~fn~P~GIaVd~-dGnIYVADs~N~rIrk~d-~~G-VstIaGG~~g~~~G~~---------dg------~~~~a~f~~P 201 (507)
..--|-++|.+|+ +++|+|+-...+.|.+|+ ..+ +.=+.|...+-..... +| ......+...
T Consensus 268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQ 347 (477)
T PF05935_consen 268 RDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQ 347 (477)
T ss_dssp SBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-
T ss_pred CCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccc
Confidence 2235678999999 677888888888999999 555 5545553322111100 00 0111123344
Q ss_pred ceEEEEcCCC---eEEEEeCCCCe
Q 010579 202 FDVVYVGSSC---SLLVIDRGNQA 222 (507)
Q Consensus 202 ~gIa~vd~~G---~LyVaD~gn~r 222 (507)
+.+.+ -+++ .|+|.|-+++|
T Consensus 348 H~~~~-~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 348 HTAHL-IPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp EEEEE--TTS---SEEEEE--TTG
T ss_pred cceEE-cCCCCeEEEEEEECCCCC
Confidence 56554 4667 89999976654
No 115
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=71.95 E-value=1.4e+02 Score=33.01 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=59.2
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC------
Q 010579 88 VAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT------ 161 (507)
Q Consensus 88 IaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs------ 161 (507)
+...++|.|++... ++++.++.. |++....--+.+. ..| =.++...++|++++.-.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~----G~v~~~~~l~~~~----------~~~--HHD~~~l~nGn~L~l~~~~~~~~ 214 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL----GKVIWEYDLPGGY----------YDF--HHDIDELPNGNLLILASETKYVD 214 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT------EEEEEE--TTE----------E-B---S-EEE-TTS-EEEEEEETTEE-
T ss_pred eeEcCCCCEEEecC--CceEEEcCC----CCEEEeeecCCcc----------ccc--ccccEECCCCCEEEEEeeccccc
Confidence 44556677666654 677777765 4432221111000 011 24788889999555333
Q ss_pred -------CCCeEEEEcCCC--cEEEecCcccCCCCC--------CCCCc--cCccCCCCceEEEEcCCCeEEEEeCCCCe
Q 010579 162 -------MNMAIRKISDTG--VTTIAGGKWSRGVGH--------VDGPS--EDAKFSNDFDVVYVGSSCSLLVIDRGNQA 222 (507)
Q Consensus 162 -------~N~rIrk~d~~G--VstIaGG~~g~~~G~--------~dg~~--~~a~f~~P~gIa~vd~~G~LyVaD~gn~r 222 (507)
....|..+|.+| |...--...-..... .+... ...--..-++|.+++.+++|+|+-+..+.
T Consensus 215 ~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~ 294 (477)
T PF05935_consen 215 EDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSA 294 (477)
T ss_dssp TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-E
T ss_pred CCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceE
Confidence 145688888777 333211110000000 00000 00011234688887779999999999999
Q ss_pred EEEEECCCCceee
Q 010579 223 IREIQLHDDDCSD 235 (507)
Q Consensus 223 Ir~I~l~~~~~~~ 235 (507)
|.+|+..+....+
T Consensus 295 V~~Id~~t~~i~W 307 (477)
T PF05935_consen 295 VIKIDYRTGKIKW 307 (477)
T ss_dssp EEEEE-TTS-EEE
T ss_pred EEEEECCCCcEEE
Confidence 9999966554443
No 116
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=71.78 E-value=73 Score=34.72 Aligned_cols=115 Identities=16% Similarity=0.083 Sum_probs=77.9
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
.=.+|++.+||.|..+-.-.+-=+++|.- +|+. ..+.|. ...-.+|+++|+|....+-+.
T Consensus 305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlR---tgr~im~L~gH----------------~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 305 GVFSIAFQPDGSLAATGGLDSLGRVWDLR---TGRCIMFLAGH----------------IKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred ccceeEecCCCceeeccCccchhheeecc---cCcEEEEeccc----------------ccceeeEeECCCceEEeecCC
Confidence 45689999999998775544333344543 2443 334332 345568999999998888888
Q ss_pred CCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579 163 NMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 234 (507)
Q Consensus 163 N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~ 234 (507)
.+.+++.|-.+ +.+|.+-. +--..|.+.+..|..+++-...+.++..+..+-.|.
T Consensus 366 Dnt~kVWDLR~r~~ly~ipAH~-----------------nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPAHS-----------------NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred CCcEEEeeecccccceeccccc-----------------chhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 88888888444 66774322 233467776668889999999999999887664443
No 117
>PLN00181 protein SPA1-RELATED; Provisional
Probab=71.02 E-value=1.3e+02 Score=35.12 Aligned_cols=122 Identities=10% Similarity=0.093 Sum_probs=68.8
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCC-CCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSP-YSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADT 161 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~-~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs 161 (507)
.-..|+++++|.++++-..++.|+.++..... .+.... ....... + -....++++++ ++++.++-.
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~---~~~~~~~---~------~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIH---YPVVELA---S------RSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccc---cceEEec---c------cCceeeEEeccCCCCEEEEEe
Confidence 34678999999988888888999999864210 000000 0000000 0 01234677765 356555555
Q ss_pred CCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579 162 MNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 234 (507)
Q Consensus 162 ~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~ 234 (507)
..+.|+.+|.. + +.++.+ . . ..-++|++.+.++.++++-...+.|+.+++....+.
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~-H-------~---------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKE-H-------E---------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred CCCeEEEEECCCCeEEEEecC-C-------C---------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 67788888843 3 333321 0 0 112455654456777777777788888887765543
No 118
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=70.90 E-value=26 Score=37.21 Aligned_cols=111 Identities=14% Similarity=0.204 Sum_probs=61.0
Q ss_pred cEEEEeCC----CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCCe----
Q 010579 95 ELLVLDSE----NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNMA---- 165 (507)
Q Consensus 95 ~LYVaDs~----n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~r---- 165 (507)
++||.|.. .+||++++.+ .+++.-.+-. | |. | .++++++|+ +|+|++.-.|
T Consensus 4 rvyV~D~~~~~~~~rv~viD~d---~~k~lGmi~~--g-------------~~-~-~~~~spdgk~~y~a~T~~sR~~rG 63 (342)
T PF06433_consen 4 RVYVQDPVFFHMTSRVYVIDAD---SGKLLGMIDT--G-------------FL-G-NVALSPDGKTIYVAETFYSRGTRG 63 (342)
T ss_dssp EEEEEE-GGGGSSEEEEEEETT---TTEEEEEEEE--E-------------SS-E-EEEE-TTSSEEEEEEEEEEETTEE
T ss_pred EEEEECCccccccceEEEEECC---CCcEEEEeec--c-------------cC-C-ceeECCCCCEEEEEEEEEeccccc
Confidence 68888873 3688888876 2333222211 1 11 1 477889887 9999886332
Q ss_pred -----EEEEcCCCcEEEecCcccCCCCCCCCCcc--CccCCCCceEEEEcCCCeEEEEeC-CCCeEEEEECCCCcee
Q 010579 166 -----IRKISDTGVTTIAGGKWSRGVGHVDGPSE--DAKFSNDFDVVYVGSSCSLLVIDR-GNQAIREIQLHDDDCS 234 (507)
Q Consensus 166 -----Irk~d~~GVstIaGG~~g~~~G~~dg~~~--~a~f~~P~gIa~vd~~G~LyVaD~-gn~rIr~I~l~~~~~~ 234 (507)
|.++|...+....- ..-|.. ...+..++..++.+++..+||.+. =...|-+||+......
T Consensus 64 ~RtDvv~~~D~~TL~~~~E---------I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 64 ERTDVVEIWDTQTLSPTGE---------IEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVV 131 (342)
T ss_dssp EEEEEEEEEETTTTEEEEE---------EEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEE
T ss_pred cceeEEEEEecCcCcccce---------EecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCcee
Confidence 66777666432210 001111 123456677776677778888874 3457777877765543
No 119
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.46 E-value=12 Score=37.43 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=37.9
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCC-CEEEEe
Q 010579 93 SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRG-NIYIAD 160 (507)
Q Consensus 93 dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dG-nIYVAD 160 (507)
+|.||.--....+|.||+++ +|++...+... +..- .-.......+-++|||.++++ .+||+-
T Consensus 185 dG~lyANVw~t~~I~rI~p~---sGrV~~widlS-~L~~--~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPD---SGRVVAWIDLS-GLLK--ELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCC---CCcEEEEEEcc-CCch--hcCccccccccccceeecCcCCeEEEec
Confidence 34555555556789999998 57766554321 1100 001122346789999999976 588874
No 120
>PRK02889 tolB translocation protein TolB; Provisional
Probab=70.32 E-value=1.6e+02 Score=31.62 Aligned_cols=68 Identities=26% Similarity=0.357 Sum_probs=37.7
Q ss_pred EEEEcCCCc-EEEE-e-CCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-E-EEEeC
Q 010579 87 SVAVSPSGE-LLVL-D-SENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I-YIADT 161 (507)
Q Consensus 87 gIaVd~dG~-LYVa-D-s~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-I-YVADs 161 (507)
.++++|||. |+++ + .++.+|+.++.++ +....+... .+ .....++++||. | |++|.
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~---~~~~~lt~~--------~~--------~~~~~~wSpDG~~l~f~s~~ 304 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADG---SGLRRLTQS--------SG--------IDTEPFFSPDGRSIYFTSDR 304 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCC---CCcEECCCC--------CC--------CCcCeEEcCCCCEEEEEecC
Confidence 568899986 5443 2 3446788888763 222222111 00 112456888987 4 44553
Q ss_pred -CCCeEEEEcCCC
Q 010579 162 -MNMAIRKISDTG 173 (507)
Q Consensus 162 -~N~rIrk~d~~G 173 (507)
++..|..++.++
T Consensus 305 ~g~~~Iy~~~~~~ 317 (427)
T PRK02889 305 GGAPQIYRMPASG 317 (427)
T ss_pred CCCcEEEEEECCC
Confidence 355788887443
No 121
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=69.16 E-value=1.4e+02 Score=30.54 Aligned_cols=83 Identities=17% Similarity=0.280 Sum_probs=50.6
Q ss_pred ccCCCc-ceEEEcCCCCEEEEeCCCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCC-CceEEEEcCCCeEE
Q 010579 140 ARMNHP-KGLAVDDRGNIYIADTMNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSN-DFDVVYVGSSCSLL 214 (507)
Q Consensus 140 a~fn~P-~GIaVd~dGnIYVADs~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~-P~gIa~vd~~G~Ly 214 (507)
.-|.+| +.+.+.+||+.-++-+.+..||.+|.+ | +....|-++- ....+..|+. ...|+--..+|.+|
T Consensus 180 Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~-------eykldc~l~qsdthV~sgSEDG~Vy 252 (307)
T KOG0316|consen 180 DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM-------EYKLDCCLNQSDTHVFSGSEDGKVY 252 (307)
T ss_pred hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc-------eeeeeeeecccceeEEeccCCceEE
Confidence 346666 579999999999999999999999954 4 3333332211 0122334433 44444334578888
Q ss_pred EEeCCCCe-EEEEECC
Q 010579 215 VIDRGNQA-IREIQLH 229 (507)
Q Consensus 215 VaD~gn~r-Ir~I~l~ 229 (507)
+-|--+.. |.++...
T Consensus 253 ~wdLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 253 FWDLVDETQISKLSVV 268 (307)
T ss_pred EEEeccceeeeeeccC
Confidence 88875543 4444433
No 122
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=68.37 E-value=1.1e+02 Score=28.97 Aligned_cols=64 Identities=22% Similarity=0.433 Sum_probs=37.3
Q ss_pred EEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEEE
Q 010579 89 AVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRK 168 (507)
Q Consensus 89 aVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk 168 (507)
++..+|.||+++ ..+.|+.++.. +|+..--.-.. + .+..+ .++ .++.|||+...+ +|+.
T Consensus 32 ~~~~~~~v~~~~-~~~~l~~~d~~---tG~~~W~~~~~-~------------~~~~~--~~~-~~~~v~v~~~~~-~l~~ 90 (238)
T PF13360_consen 32 AVPDGGRVYVAS-GDGNLYALDAK---TGKVLWRFDLP-G------------PISGA--PVV-DGGRVYVGTSDG-SLYA 90 (238)
T ss_dssp EEEETTEEEEEE-TTSEEEEEETT---TSEEEEEEECS-S------------CGGSG--EEE-ETTEEEEEETTS-EEEE
T ss_pred EEEeCCEEEEEc-CCCEEEEEECC---CCCEEEEeecc-c------------cccce--eee-ccccccccccee-eeEe
Confidence 444567888884 56899999974 24332111100 0 11111 233 357799988545 9999
Q ss_pred Ec-CCC
Q 010579 169 IS-DTG 173 (507)
Q Consensus 169 ~d-~~G 173 (507)
+| .+|
T Consensus 91 ~d~~tG 96 (238)
T PF13360_consen 91 LDAKTG 96 (238)
T ss_dssp EETTTS
T ss_pred cccCCc
Confidence 99 677
No 123
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=67.11 E-value=65 Score=33.99 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=79.0
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
-+.+.|.|...|+++-+..+.|..|+..-....+ ..++ . .-..-..|.+.|.|.+..+-+..
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~---------------q--d~~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF---------------Q--DTEPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh---------------h--ccceeeeEeecCCCceEEEecCC
Confidence 3567888877888888888888888764110000 0000 0 01123589999999988888888
Q ss_pred CeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579 164 MAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 235 (507)
Q Consensus 164 ~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~ 235 (507)
..+|.+|-+....++.-. .+++ .-..-..|-+ .+.++|||+-+..+.|+.++--.+.|..
T Consensus 238 p~~rlYdv~T~Qcfvsan------Pd~q-----ht~ai~~V~Y-s~t~~lYvTaSkDG~IklwDGVS~rCv~ 297 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSAN------PDDQ-----HTGAITQVRY-SSTGSLYVTASKDGAIKLWDGVSNRCVR 297 (430)
T ss_pred CceeEEeccceeEeeecC------cccc-----cccceeEEEe-cCCccEEEEeccCCcEEeeccccHHHHH
Confidence 888889877643333210 0111 1112345554 7889999999999999999988877765
No 124
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.83 E-value=1.7e+02 Score=30.49 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=42.0
Q ss_pred EEcC-CCCEEEEeCCCCeEEEEcCC-CcEEEecCcccCCCCCCCCCccCc-cCCCCceEEEEcCCCeEEEEeCCCCeEEE
Q 010579 149 AVDD-RGNIYIADTMNMAIRKISDT-GVTTIAGGKWSRGVGHVDGPSEDA-KFSNDFDVVYVGSSCSLLVIDRGNQAIRE 225 (507)
Q Consensus 149 aVd~-dGnIYVADs~N~rIrk~d~~-GVstIaGG~~g~~~G~~dg~~~~a-~f~~P~gIa~vd~~G~LyVaD~gn~rIr~ 225 (507)
++++ +|.||+|-+. ++|...+.+ +-++..+-. ...+|.... .+-.|. +..-..+|.|.-.|..+..||+
T Consensus 142 ~i~~g~~sly~a~t~-G~vlavt~~~~~~~~~w~~------~~~~PiF~splcv~~s-v~i~~VdG~l~~f~~sG~qvwr 213 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITA-GAVLAVTKNPYSSTEFWAA------TRFGPIFASPLCVGSS-VIITTVDGVLTSFDESGRQVWR 213 (354)
T ss_pred eecCCCceEEEEecc-ceEEEEccCCCCcceehhh------hcCCccccCceeccce-EEEEEeccEEEEEcCCCcEEEe
Confidence 4666 7899999874 466666643 322222211 011121111 122222 3334568899999988889998
Q ss_pred EECCCC
Q 010579 226 IQLHDD 231 (507)
Q Consensus 226 I~l~~~ 231 (507)
+...+.
T Consensus 214 ~~t~Gp 219 (354)
T KOG4649|consen 214 PATKGP 219 (354)
T ss_pred ecCCCc
Confidence 877664
No 125
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=66.31 E-value=1.7e+02 Score=30.38 Aligned_cols=24 Identities=13% Similarity=0.398 Sum_probs=16.5
Q ss_pred EEEcCCCCEEEEeCCCCeEEEEcC-CC
Q 010579 148 LAVDDRGNIYIADTMNMAIRKISD-TG 173 (507)
Q Consensus 148 IaVd~dGnIYVADs~N~rIrk~d~-~G 173 (507)
++++ ++.+||++. ++.|..+|. +|
T Consensus 101 p~v~-~~~v~v~~~-~g~l~ald~~tG 125 (377)
T TIGR03300 101 VGAD-GGLVFVGTE-KGEVIALDAEDG 125 (377)
T ss_pred eEEc-CCEEEEEcC-CCEEEEEECCCC
Confidence 4555 567888764 567888885 56
No 126
>PTZ00420 coronin; Provisional
Probab=66.22 E-value=2.3e+02 Score=32.23 Aligned_cols=71 Identities=10% Similarity=0.096 Sum_probs=48.0
Q ss_pred CeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 84 EPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 84 ~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
.-..|+++|++. ++++-+..+.|+.++... +......... .....|+++++|+++++-+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t---g~~~~~i~~~----------------~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIEN---EKRAFQINMP----------------KKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCC---CcEEEEEecC----------------CcEEEEEECCCCCEEEEEec
Confidence 346788999875 455656678999998762 2221111000 13568999999999988777
Q ss_pred CCeEEEEcCCC
Q 010579 163 NMAIRKISDTG 173 (507)
Q Consensus 163 N~rIrk~d~~G 173 (507)
.+.|+.+|...
T Consensus 188 D~~IrIwD~Rs 198 (568)
T PTZ00420 188 GKHMHIIDPRK 198 (568)
T ss_pred CCEEEEEECCC
Confidence 78899999543
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=66.08 E-value=2.1e+02 Score=34.07 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=23.9
Q ss_pred ccCCCc-ceEEEcCCCCEEEEeCCCCeEEEEc
Q 010579 140 ARMNHP-KGLAVDDRGNIYIADTMNMAIRKIS 170 (507)
Q Consensus 140 a~fn~P-~GIaVd~dGnIYVADs~N~rIrk~d 170 (507)
++|..| +.++|+.+|+..++=+..-.|..++
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~ 124 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLN 124 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEe
Confidence 356555 4789999999888877777787777
No 128
>PRK01742 tolB translocation protein TolB; Provisional
Probab=65.86 E-value=1.7e+02 Score=31.34 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=18.9
Q ss_pred eEEEcCCCC-EEEE-e-CCCCeEEEEcCCC--cEEE
Q 010579 147 GLAVDDRGN-IYIA-D-TMNMAIRKISDTG--VTTI 177 (507)
Q Consensus 147 GIaVd~dGn-IYVA-D-s~N~rIrk~d~~G--VstI 177 (507)
.+++++||+ |+++ + .++.+|+.++.++ +..+
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 478889997 5554 3 3344677777443 4444
No 129
>PRK05137 tolB translocation protein TolB; Provisional
Probab=64.70 E-value=2e+02 Score=30.76 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=37.6
Q ss_pred EEEEcCCCc-E-EEEeC-CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeC-
Q 010579 87 SVAVSPSGE-L-LVLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADT- 161 (507)
Q Consensus 87 gIaVd~dG~-L-YVaDs-~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs- 161 (507)
..+++|||. | |++|. +..+|++++.++ +....+.... + .-...++++||+ |+++..
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g---~~~~~lt~~~--------~--------~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADG---SNPRRISFGG--------G--------RYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCC---CCeEEeecCC--------C--------cccCeEECCCCCEEEEEEcC
Confidence 457888886 4 34443 235789988763 3333332110 0 112356788887 545443
Q ss_pred -CCCeEEEEcCCC
Q 010579 162 -MNMAIRKISDTG 173 (507)
Q Consensus 162 -~N~rIrk~d~~G 173 (507)
+..+|.+++.++
T Consensus 355 ~~~~~i~~~d~~~ 367 (435)
T PRK05137 355 GGQFSIGVMKPDG 367 (435)
T ss_pred CCceEEEEEECCC
Confidence 235788888544
No 130
>PLN00181 protein SPA1-RELATED; Provisional
Probab=62.41 E-value=3e+02 Score=32.13 Aligned_cols=109 Identities=9% Similarity=0.036 Sum_probs=64.0
Q ss_pred eeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeC
Q 010579 85 PFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADT 161 (507)
Q Consensus 85 P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs 161 (507)
..++++++ ++.++++-...+.|+.++... +.. ..+.+. -..-..|++++ +|+++++=+
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~---~~~~~~~~~H----------------~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVAR---SQLVTEMKEH----------------EKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCC---CeEEEEecCC----------------CCCEEEEEEcCCCCCEEEEEc
Confidence 35677766 456666666678899998752 222 222111 11245788885 788888777
Q ss_pred CCCeEEEEcCC-C--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 162 MNMAIRKISDT-G--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 162 ~N~rIrk~d~~-G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
..+.|+.+|.. + +.++... .....+.+.+.++.++++-..++.|+.+++..
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~~------------------~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKTK------------------ANICCVQFPSESGRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred CCCEEEEEECCCCcEEEEEecC------------------CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 77889998843 3 3333210 01223443345566666666677777777654
No 131
>PRK00178 tolB translocation protein TolB; Provisional
Probab=62.04 E-value=2.2e+02 Score=30.23 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=37.3
Q ss_pred EEEEcCCCc-EEEE-e-CCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EE-EEeC
Q 010579 87 SVAVSPSGE-LLVL-D-SENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IY-IADT 161 (507)
Q Consensus 87 gIaVd~dG~-LYVa-D-s~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IY-VADs 161 (507)
.++++|||. |+++ + .++..|++++..+ +....+.... ......++++||. |+ .+|.
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~---~~~~~lt~~~----------------~~~~~~~~spDg~~i~f~s~~ 307 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLAS---RQLSRVTNHP----------------AIDTEPFWGKDGRTLYFTSDR 307 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCC---CCeEEcccCC----------------CCcCCeEECCCCCEEEEEECC
Confidence 468899986 5443 3 2345899998873 3333332211 0122456788886 44 4443
Q ss_pred C-CCeEEEEcC
Q 010579 162 M-NMAIRKISD 171 (507)
Q Consensus 162 ~-N~rIrk~d~ 171 (507)
. +..|.+++.
T Consensus 308 ~g~~~iy~~d~ 318 (430)
T PRK00178 308 GGKPQIYKVNV 318 (430)
T ss_pred CCCceEEEEEC
Confidence 3 457888874
No 132
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=61.85 E-value=12 Score=40.87 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=30.3
Q ss_pred ccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCCC
Q 010579 140 ARMNHPKGLAVDDRGNIYIADTMNMAIRKISDTG 173 (507)
Q Consensus 140 a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~G 173 (507)
..|..|.||.+|.||..|++|-..+.+.+..+.+
T Consensus 464 ~~fylphgl~~dkdgf~~~tdvash~v~k~k~~~ 497 (501)
T KOG3567|consen 464 NLFYLPHGLSIDKDGFYWVTDVASHQVFKLKPNN 497 (501)
T ss_pred CceecCCcceecCCCcEEeecccchhhhhccccc
Confidence 3688999999999999999999999998887654
No 133
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=61.23 E-value=1.3e+02 Score=33.26 Aligned_cols=113 Identities=11% Similarity=0.163 Sum_probs=76.7
Q ss_pred CCeeEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579 83 MEPFSVAVSPSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 161 (507)
Q Consensus 83 ~~P~gIaVd~dG-~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs 161 (507)
.-|+.+-+.||+ ++|++-..+++|+-+|... +.+.-- . +..|..-+.|.+-++|.=||+-+
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs---~kvvqe-------Y--------d~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS---GKVVQE-------Y--------DRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccc---hHHHHH-------H--------HhhhhheeeeEEccCCceEeeec
Confidence 358888999988 8999999999999999752 221100 0 12355566899999999999888
Q ss_pred CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 162 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 162 ~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
....+|+++-.. +..++- .+...-|. |. +.+++..+++.+-.|+|..++...
T Consensus 362 Ddks~riWe~~~~v~ik~i~~---------------~~~hsmP~-~~-~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIAD---------------PEMHTMPC-LT-LHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred cCccEEEEEcCCCccchhhcc---------------hhhccCcc-ee-cCCCCCeehhhccCceEEEEeccc
Confidence 777777777443 333321 11223333 33 467888888888888998888544
No 134
>PRK02889 tolB translocation protein TolB; Provisional
Probab=60.80 E-value=2.4e+02 Score=30.26 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=17.4
Q ss_pred eEEEcCCCC-EEEE-e-CCCCeEEEEcCCC
Q 010579 147 GLAVDDRGN-IYIA-D-TMNMAIRKISDTG 173 (507)
Q Consensus 147 GIaVd~dGn-IYVA-D-s~N~rIrk~d~~G 173 (507)
..++++||+ |+++ + .++.+|+.++.++
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 273 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVNADG 273 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 577888886 5443 3 3456788887543
No 135
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=60.78 E-value=85 Score=36.38 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=67.4
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEE
Q 010579 88 VAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIR 167 (507)
Q Consensus 88 IaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIr 167 (507)
++++++|...++-. +++|-.++.. ++++....|.. ..+..-..+++++|++..++=..+..++
T Consensus 25 ~~~s~nG~~L~t~~-~d~Vi~idv~---t~~~~l~s~~~-------------ed~d~ita~~l~~d~~~L~~a~rs~llr 87 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-GDRVIIIDVA---TGSIALPSGSN-------------EDEDEITALALTPDEEVLVTASRSQLLR 87 (775)
T ss_pred eeECCCCCEEEEec-CceEEEEEcc---CCceecccCCc-------------cchhhhheeeecCCccEEEEeeccceEE
Confidence 78999999877765 4678888765 34443322221 1244566899999998777777777788
Q ss_pred EEc-CCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579 168 KIS-DTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 235 (507)
Q Consensus 168 k~d-~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~ 235 (507)
.++ +.| +.+.... =..|.-+...++.+.|+-.-.-.++|++.+...+.|+-
T Consensus 88 v~~L~tgk~irswKa~-----------------He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 88 VWSLPTGKLIRSWKAI-----------------HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred EEEcccchHhHhHhhc-----------------cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 877 444 2221110 01333333345555444444445666777766666653
No 136
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=60.04 E-value=1.1e+02 Score=32.44 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=49.9
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCe
Q 010579 86 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA 165 (507)
Q Consensus 86 ~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~r 165 (507)
..|.+.|.|+...+-.....++.++-+ +...++... ..++ .-..-+.+-+.+.|+|||+-+..+.
T Consensus 220 rsiSfHPsGefllvgTdHp~~rlYdv~-----T~Qcfvsan-----Pd~q-----ht~ai~~V~Ys~t~~lYvTaSkDG~ 284 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGTDHPTLRLYDVN-----TYQCFVSAN-----PDDQ-----HTGAITQVRYSSTGSLYVTASKDGA 284 (430)
T ss_pred eeEeecCCCceEEEecCCCceeEEecc-----ceeEeeecC-----cccc-----cccceeEEEecCCccEEEEeccCCc
Confidence 468888998877766666666666654 223333211 0011 1123457888999999999999999
Q ss_pred EEEEcC--CC-cEEE
Q 010579 166 IRKISD--TG-VTTI 177 (507)
Q Consensus 166 Irk~d~--~G-VstI 177 (507)
|+.+|. +. |.+|
T Consensus 285 IklwDGVS~rCv~t~ 299 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTI 299 (430)
T ss_pred EEeeccccHHHHHHH
Confidence 999993 33 6666
No 137
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=59.18 E-value=74 Score=34.65 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=56.7
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADTM 162 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs~ 162 (507)
.=.+|+++|+|....+-+..+.+++++.... ..+.++.+. -|--..|.+++ .|++.|+-+.
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r--~~ly~ipAH----------------~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMR--SELYTIPAH----------------SNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeeccc--ccceecccc----------------cchhhheEecccCCeEEEEccc
Confidence 5678999999999998888888888887521 123333322 24556899998 6788888888
Q ss_pred CCeEEEEcCCC---cEEEec
Q 010579 163 NMAIRKISDTG---VTTIAG 179 (507)
Q Consensus 163 N~rIrk~d~~G---VstIaG 179 (507)
.+.++..++.+ +.+++|
T Consensus 409 D~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred CcceeeecCCCcccchhhcC
Confidence 89999999766 566665
No 138
>PRK03629 tolB translocation protein TolB; Provisional
Probab=59.02 E-value=2.6e+02 Score=30.09 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=41.1
Q ss_pred eeEEEEcCCCc-E-EEEeCC-CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEe
Q 010579 85 PFSVAVSPSGE-L-LVLDSE-NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIAD 160 (507)
Q Consensus 85 P~gIaVd~dG~-L-YVaDs~-n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVAD 160 (507)
....+++|||. | |++|.. ..+|++++.++ +....+...+ ......++++||. |+++.
T Consensus 289 ~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~---g~~~~lt~~~----------------~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 289 NTEPTWFPDSQNLAYTSDQAGRPQVYKVNING---GAPQRITWEG----------------SQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred cCceEECCCCCEEEEEeCCCCCceEEEEECCC---CCeEEeecCC----------------CCccCEEECCCCCEEEEEE
Confidence 34668899987 4 555543 35899888874 3333332110 0123467888887 44443
Q ss_pred C--CCCeEEEEcCC-C-cEEE
Q 010579 161 T--MNMAIRKISDT-G-VTTI 177 (507)
Q Consensus 161 s--~N~rIrk~d~~-G-VstI 177 (507)
. +...|.+++.+ | +..+
T Consensus 350 ~~~g~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGVQVL 370 (429)
T ss_pred ccCCCceEEEEECCCCCeEEe
Confidence 3 23457777743 3 4444
No 139
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=58.77 E-value=3.7e+02 Score=31.75 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=75.2
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCCCC
Q 010579 86 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTMNM 164 (507)
Q Consensus 86 ~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~N~ 164 (507)
.+++++++|.++++-+....|++++.-.+ .+++.++.-. ..-.++++.|+|. |-|| +.++
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s-~~~vEtl~i~-----------------sdvl~vsfrPdG~elaVa-Tldg 542 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSS-SGTVETLEIR-----------------SDVLAVSFRPDGKELAVA-TLDG 542 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeecc-CceeeeEeec-----------------cceeEEEEcCCCCeEEEE-Eecc
Confidence 36899999999999999999999986422 2455554322 1345788999987 6665 4466
Q ss_pred eEEEEcCC-C--cEEEecCcccCCC-CCCCC-CccCccCCCCc-eEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579 165 AIRKISDT-G--VTTIAGGKWSRGV-GHVDG-PSEDAKFSNDF-DVVYVGSSCSLLVIDRGNQAIREIQLHDDD 232 (507)
Q Consensus 165 rIrk~d~~-G--VstIaGG~~g~~~-G~~dg-~~~~a~f~~P~-gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~ 232 (507)
.|-.+|.. + +.+|-|.+--.++ ...|. .+.++....++ .|++ ..+|...++--.++.|-.++.....
T Consensus 543 qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~y-SaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 543 QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICY-SADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEE-cCCCCEEEecCCcccEEEEECchhh
Confidence 78888743 2 4445442211100 01111 12222233333 4554 6777777777777777777765433
No 140
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=58.64 E-value=1.5e+02 Score=29.87 Aligned_cols=110 Identities=23% Similarity=0.353 Sum_probs=52.7
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC---ccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 86 FSVAVSPSGELLVLDSENSNIYKISTSLSPYS---RPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 86 ~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g---~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
.-|+..|+|.||+.. ++.+++.++...... .....+|.+ |. ..|. .|++|++|.||..+.
T Consensus 37 ~~i~~~P~g~lY~I~--~~~lY~~~~~~~~~~~~~~~~~~Ig~g----~W-------~~F~---~i~~d~~G~LYaV~~- 99 (229)
T PF14517_consen 37 RDIAAGPNGRLYAIR--NDGLYRGSPSSSGGNTWDSGSKQIGDG----GW-------NSFK---FIFFDPTGVLYAVTP- 99 (229)
T ss_dssp SEEEE-TTS-EEEEE--TTEEEEES---STT--HHHH-EEEE-S-----G-------GG-S---EEEE-TTS-EEEEET-
T ss_pred ceEEEcCCceEEEEE--CCceEEecCCccCcccccccCcccccC----cc-------ccee---EEEecCCccEEEecc-
Confidence 367889999999998 448888843211000 111122211 00 1233 899999999998876
Q ss_pred CCeEEEEcC--CC-c-------EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEE-ECCC
Q 010579 163 NMAIRKISD--TG-V-------TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREI-QLHD 230 (507)
Q Consensus 163 N~rIrk~d~--~G-V-------stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I-~l~~ 230 (507)
+..+.+... ++ . ..|.+.. - +.+..++.+.+|.||+.+..+ ++.+. .+..
T Consensus 100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~~G----------------W-~~f~~vfa~~~GvLY~i~~dg-~~~~~~~p~~ 160 (229)
T PF14517_consen 100 DGKLYRHPRPTNGSDNWIGGSGKKIGGTG----------------W-NDFDAVFAGPNGVLYAITPDG-RLYRRYRPDG 160 (229)
T ss_dssp T-EEEEES---STT--HHH-HSEEEE-SS----------------G-GGEEEEEE-TTS-EEEEETTE--EEEE---SS
T ss_pred ccceeeccCCCccCcchhhccceecccCC----------------C-ccceEEEeCCCccEEEEcCCC-ceEEeCCCCC
Confidence 455665552 22 1 1221111 1 113345679999999999665 66666 4443
No 141
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=58.02 E-value=2.3e+02 Score=29.23 Aligned_cols=124 Identities=13% Similarity=0.133 Sum_probs=73.0
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 164 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~ 164 (507)
=..++|++||...++-...++.+++++.... ..+.+.-.- . -.+.=.+-.-+-++||+...++-+...
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~--~~s~l~P~~-k---------~~ah~~~il~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ--TASELEPVH-K---------FQAHNGHILRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCC--ccccceEhh-h---------eecccceEEEEEECCCCcEEEeecCCc
Confidence 3466777777777766666677776654211 000000000 0 011122345677889998888888888
Q ss_pred eEEEEcCCCc----EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeCCC
Q 010579 165 AIRKISDTGV----TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYD 238 (507)
Q Consensus 165 rIrk~d~~GV----stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~~~ 238 (507)
.+++++.++. ..+.|+. .+-++.+| ..+|.-+|+-...+.+|..++..+....++.
T Consensus 238 tv~iwn~~~~~kle~~l~gh~-----------------rWvWdc~F-S~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 238 TVKIWNTDDFFKLELVLTGHQ-----------------RWVWDCAF-SADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred eEEEEecCCceeeEEEeecCC-----------------ceEEeeee-ccCccEEEecCCCCceeecccccCceeeecC
Confidence 8999998874 1222211 24566665 6777777777777888888877665444443
No 142
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.64 E-value=2.3e+02 Score=28.66 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCeEEEEcC-CC-c-EEE--ecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEE
Q 010579 153 RGNIYIADTMNMAIRKISD-TG-V-TTI--AGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ 227 (507)
Q Consensus 153 dGnIYVADs~N~rIrk~d~-~G-V-stI--aGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~ 227 (507)
+|.||--=....||.+|++ +| | ..| ++-... -.......+-++|||+++..+++|++-..=-.+..+.
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~-------~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk 257 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKE-------LNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVK 257 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchh-------cCccccccccccceeecCcCCeEEEecCcCceeEEEE
Confidence 4555554445678999995 44 3 333 111100 0111223567899999888889999876545555554
Q ss_pred C
Q 010579 228 L 228 (507)
Q Consensus 228 l 228 (507)
+
T Consensus 258 ~ 258 (262)
T COG3823 258 L 258 (262)
T ss_pred e
Confidence 4
No 143
>PRK01029 tolB translocation protein TolB; Provisional
Probab=56.42 E-value=2.9e+02 Score=29.85 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=37.0
Q ss_pred eEEEEcCCCc-E-EEEeC-CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE-Ee
Q 010579 86 FSVAVSPSGE-L-LVLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI-AD 160 (507)
Q Consensus 86 ~gIaVd~dG~-L-YVaDs-~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV-AD 160 (507)
...+++|||. | |++|. ++.+|++++.++.. +....+.... ......++++||+ |++ ++
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~----------------~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKY----------------RNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCC----------------CCccceeECCCCCEEEEEEc
Confidence 3568889987 4 44543 23467777654210 1122221110 1123567889987 443 33
Q ss_pred C-CCCeEEEEcCCC
Q 010579 161 T-MNMAIRKISDTG 173 (507)
Q Consensus 161 s-~N~rIrk~d~~G 173 (507)
. +..+|.+++..+
T Consensus 347 ~~g~~~I~v~dl~~ 360 (428)
T PRK01029 347 IKGVRQICVYDLAT 360 (428)
T ss_pred CCCCcEEEEEECCC
Confidence 3 245788888543
No 144
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=56.29 E-value=2.4e+02 Score=29.11 Aligned_cols=117 Identities=11% Similarity=0.155 Sum_probs=71.0
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 164 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~ 164 (507)
=+.+.+.||+..+.+ .++-.|+.+|.+.+...-+.++-|. -++-..|.+..+|....+-+...
T Consensus 43 VNrLeiTpdk~~LAa-a~~qhvRlyD~~S~np~Pv~t~e~h----------------~kNVtaVgF~~dgrWMyTgseDg 105 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAA-AGNQHVRLYDLNSNNPNPVATFEGH----------------TKNVTAVGFQCDGRWMYTGSEDG 105 (311)
T ss_pred eeeEEEcCCcchhhh-ccCCeeEEEEccCCCCCceeEEecc----------------CCceEEEEEeecCeEEEecCCCc
Confidence 447889998766554 5677899998874321122222221 12345677778888666666666
Q ss_pred eEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCC-ceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579 165 AIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSND-FDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 235 (507)
Q Consensus 165 rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P-~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~ 235 (507)
.+++.|-.... +- .+-+++.| +.|+.-+..+.|++.|. ++.||..|+..+.|.-
T Consensus 106 t~kIWdlR~~~--~q--------------R~~~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 106 TVKIWDLRSLS--CQ--------------RNYQHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTH 160 (311)
T ss_pred eEEEEeccCcc--cc--------------hhccCCCCcceEEecCCcceEEeecC-CCcEEEEEccCCcccc
Confidence 77777743310 00 01122233 35665556677888775 6889999999887765
No 145
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=55.57 E-value=2.4e+02 Score=29.63 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=69.8
Q ss_pred eeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 85 PFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 85 P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
-.+|.+.| +++.||+-......+.++.-.+ .-+.+|-|.. ..-+.|.+-|+|.-|++=+.+
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghe----------------sDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHE----------------SDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccc----------------cccceEEEccCCCeeeecCCC
Confidence 44677777 8888888777666666665411 1122333321 234589999999999998889
Q ss_pred CeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEE
Q 010579 164 MAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQ 227 (507)
Q Consensus 164 ~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~ 227 (507)
...|.||-.. +.++.. +.....-+.|++ ...|+|+++-.....+...+
T Consensus 251 ~tcRlyDlRaD~~~a~ys~---------------~~~~~gitSv~F-S~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 251 ATCRLYDLRADQELAVYSH---------------DSIICGITSVAF-SKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred ceeEEEeecCCcEEeeecc---------------CcccCCceeEEE-cccccEEEeeecCCceeEee
Confidence 9999999332 444431 111223456774 78888888876666666665
No 146
>PRK04043 tolB translocation protein TolB; Provisional
Probab=55.50 E-value=3e+02 Score=29.76 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=17.0
Q ss_pred EEcCCCc-EEE-EeC-CCCeEEEEeCCC
Q 010579 89 AVSPSGE-LLV-LDS-ENSNIYKISTSL 113 (507)
Q Consensus 89 aVd~dG~-LYV-aDs-~n~rI~ki~~~g 113 (507)
.++|||+ |++ +|. +..+|++++.++
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCC
Confidence 6888885 554 443 335899998874
No 147
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=54.01 E-value=1e+02 Score=26.73 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=33.4
Q ss_pred cceEEEcCCCCEEEEeCCCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEE
Q 010579 145 PKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 224 (507)
Q Consensus 145 P~GIaVd~dGnIYVADs~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr 224 (507)
+.-+.++++|+|++.|..+..|..=+.. .+ ..+.. +.+.++|+|.+.|..+.-|+
T Consensus 55 ~~~l~l~~dGnLvl~~~~g~~vW~S~t~------~~------------------~~~~~-~~L~ddGnlvl~~~~~~~~W 109 (114)
T smart00108 55 SCTLTLQSDGNLVLYDGDGRVVWSSNTT------GA------------------NGNYV-LVLLDDGNLVIYDSDGNFLW 109 (114)
T ss_pred CEEEEEeCCCCEEEEeCCCCEEEEeccc------CC------------------CCceE-EEEeCCCCEEEECCCCCEEe
Confidence 4568888999999998765444321111 00 01222 34678899998887655443
No 148
>PRK01742 tolB translocation protein TolB; Provisional
Probab=53.55 E-value=3.1e+02 Score=29.36 Aligned_cols=68 Identities=21% Similarity=0.321 Sum_probs=39.3
Q ss_pred EEEEcCCCc-EEEE-e-CCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE-EeC
Q 010579 87 SVAVSPSGE-LLVL-D-SENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI-ADT 161 (507)
Q Consensus 87 gIaVd~dG~-LYVa-D-s~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV-ADs 161 (507)
.++++|||. |+++ + .++-+|+.++.++ +....+.+.. ......++++||. |++ +|.
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~---~~~~~lt~~~----------------~~~~~~~wSpDG~~i~f~s~~ 312 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANG---GTPSQLTSGA----------------GNNTEPSWSPDGQSILFTSDR 312 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCC---CCeEeeccCC----------------CCcCCEEECCCCCEEEEEECC
Confidence 578999997 5544 2 2334688888763 3333332211 1123578899997 444 443
Q ss_pred -CCCeEEEEcCCC
Q 010579 162 -MNMAIRKISDTG 173 (507)
Q Consensus 162 -~N~rIrk~d~~G 173 (507)
++-+|+.++.++
T Consensus 313 ~g~~~I~~~~~~~ 325 (429)
T PRK01742 313 SGSPQVYRMSASG 325 (429)
T ss_pred CCCceEEEEECCC
Confidence 355777777554
No 149
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=53.43 E-value=86 Score=27.16 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=34.4
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
.+..+.+..+|+|++.|..+..| +..+. .+ + ..+..+.+.++|+|.+-|..+
T Consensus 54 ~~~~l~l~~dGnLvl~~~~g~~v--W~S~t---------~~------~-----------~~~~~~~L~ddGnlvl~~~~~ 105 (114)
T smart00108 54 DSCTLTLQSDGNLVLYDGDGRVV--WSSNT---------TG------A-----------NGNYVLVLLDDGNLVIYDSDG 105 (114)
T ss_pred CCEEEEEeCCCCEEEEeCCCCEE--EEecc---------cC------C-----------CCceEEEEeCCCCEEEECCCC
Confidence 34678888999999998765443 33220 00 0 134567888999998888654
Q ss_pred C
Q 010579 164 M 164 (507)
Q Consensus 164 ~ 164 (507)
.
T Consensus 106 ~ 106 (114)
T smart00108 106 N 106 (114)
T ss_pred C
Confidence 3
No 150
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=53.41 E-value=3e+02 Score=30.40 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=47.0
Q ss_pred cceEEEcCCCCEEEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCC
Q 010579 145 PKGLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQ 221 (507)
Q Consensus 145 P~GIaVd~dGnIYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~ 221 (507)
-..+++.|||.||.+=+.+..|+.+|... +..+-| -.++- ..|.| ..+|.-+++....+
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg---------ht~~v--------k~i~F-sENGY~Lat~add~ 411 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG---------HTGPV--------KAISF-SENGYWLATAADDG 411 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC---------CCCce--------eEEEe-ccCceEEEEEecCC
Confidence 34788999999999999999999999433 222211 11111 24554 67777777777777
Q ss_pred eEEEEECCCCc
Q 010579 222 AIREIQLHDDD 232 (507)
Q Consensus 222 rIr~I~l~~~~ 232 (507)
.|+.+|+....
T Consensus 412 ~V~lwDLRKl~ 422 (506)
T KOG0289|consen 412 SVKLWDLRKLK 422 (506)
T ss_pred eEEEEEehhhc
Confidence 78888887643
No 151
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=52.85 E-value=3e+02 Score=29.00 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=45.9
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 164 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~ 164 (507)
=+-+.|+|+|..+++-...+.|+.++-. |...-++-. .|..| .-.++....||+..++-....
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~----gdceN~~~l-kgHsg------------AVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVY----GDCENFWVL-KGHSG------------AVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEecc----ccccceeee-ccccc------------eeEeeeeccCCCEEEEecCCc
Confidence 3467899999999998888999999854 333322211 12222 234666777888777777777
Q ss_pred eEEEEc
Q 010579 165 AIRKIS 170 (507)
Q Consensus 165 rIrk~d 170 (507)
+|+.+|
T Consensus 113 ~v~~wD 118 (338)
T KOG0265|consen 113 TVRGWD 118 (338)
T ss_pred eEEEEe
Confidence 777777
No 152
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=52.54 E-value=2.3e+02 Score=28.61 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=30.3
Q ss_pred ChhhHHHHHHHHHHHHhhcccCCCCCCCceeecceEeEEEecCCcEEEEEeCCCCeEEecCcceEeeCCe
Q 010579 1 MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGY 70 (507)
Q Consensus 1 M~r~~l~llllLlLll~~~ssaaa~~~pa~ivsG~l~~va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~ 70 (507)
|+|.+++++++++|..|..+.++..-.|+ .+....++-+|+-.+.+..-+.....+.|.
T Consensus 1 ~k~~~~~~~la~~L~~cd~~~a~~~f~P~-----------manfSn~FdFDPlrGpVK~~tQt~~de~g~ 59 (236)
T PF06788_consen 1 MKKTLLLLALAILLAGCDNASAPESFTPE-----------MANFSNEFDFDPLRGPVKEFTQTLYDEDGE 59 (236)
T ss_pred CceeeHHHHHHHHhhhcccccccccCCHH-----------HhhhhhhccCCcccCCceeeeEEEEcCCCc
Confidence 77776655555555555444444444443 233345566666666554333344444553
No 153
>smart00284 OLF Olfactomedin-like domains.
Probab=51.16 E-value=2.6e+02 Score=28.61 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=42.3
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCC-CCccccCCCCcccccCCCcceEEEcCCCC--EEEEeCCCCe--EE
Q 010579 93 SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSP-EGYYGHVDGRPRGARMNHPKGLAVDDRGN--IYIADTMNMA--IR 167 (507)
Q Consensus 93 dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~-~G~~G~~dG~~~~a~fn~P~GIaVd~dGn--IYVADs~N~r--Ir 167 (507)
+|.||..-..+..|.|++... +.+....-.+ .++. +-..-...=..=.++|+|.+|. ||-+...++. |-
T Consensus 83 ngslYY~~~~s~~iiKydL~t---~~v~~~~~Lp~a~y~---~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvS 156 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTT---ETYQKEPLLNGAGYN---NRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVIS 156 (255)
T ss_pred CceEEEEecCCccEEEEECCC---CcEEEEEecCccccc---cccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEE
Confidence 589999888889999999973 3332111111 0110 0000000001224899999886 6666444444 45
Q ss_pred EEcCCCcE
Q 010579 168 KISDTGVT 175 (507)
Q Consensus 168 k~d~~GVs 175 (507)
|+|+..+.
T Consensus 157 kLnp~tL~ 164 (255)
T smart00284 157 KLNPATLT 164 (255)
T ss_pred eeCcccce
Confidence 89987743
No 154
>PRK00178 tolB translocation protein TolB; Provisional
Probab=50.53 E-value=3.3e+02 Score=28.82 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=39.0
Q ss_pred eEEEEcCCCc-E-EEEeC-CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE-Ee
Q 010579 86 FSVAVSPSGE-L-LVLDS-ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI-AD 160 (507)
Q Consensus 86 ~gIaVd~dG~-L-YVaDs-~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV-AD 160 (507)
...+++|||+ | |+++. .+.+|++++..+ +....+... .| .....++++||+ |++ ++
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~---g~~~~l~~~--------~g--------~~~~~~~SpDG~~la~~~~ 262 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT---GRREQITNF--------EG--------LNGAPAWSPDGSKLAFVLS 262 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCC---CCEEEccCC--------CC--------CcCCeEECCCCCEEEEEEc
Confidence 4568889986 4 45543 346799998863 333333211 01 112467788886 443 33
Q ss_pred -CCCCeEEEEcCCC
Q 010579 161 -TMNMAIRKISDTG 173 (507)
Q Consensus 161 -s~N~rIrk~d~~G 173 (507)
.++..|++++.++
T Consensus 263 ~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 263 KDGNPEIYVMDLAS 276 (430)
T ss_pred cCCCceEEEEECCC
Confidence 2345788888544
No 155
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=50.32 E-value=2.7e+02 Score=29.33 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=71.3
Q ss_pred EEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeE
Q 010579 87 SVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAI 166 (507)
Q Consensus 87 gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rI 166 (507)
.-+|.++-.+|+.+. .+.|+++|.++ ....++|.. +. .-..|.....-+..|+=+...+|
T Consensus 59 ~c~F~d~~~~~~G~~-dg~vr~~Dln~----~~~~~igth-------~~--------~i~ci~~~~~~~~vIsgsWD~~i 118 (323)
T KOG1036|consen 59 DCAFADESTIVTGGL-DGQVRRYDLNT----GNEDQIGTH-------DE--------GIRCIEYSYEVGCVISGSWDKTI 118 (323)
T ss_pred eeeccCCceEEEecc-CceEEEEEecC----CcceeeccC-------CC--------ceEEEEeeccCCeEEEcccCccE
Confidence 345555556777655 48999999983 234444442 11 12356665556688888889999
Q ss_pred EEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 010579 167 RKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD 235 (507)
Q Consensus 167 rk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~ 235 (507)
..+|... ....+ .+..+..|-..+..++.+|+-..+.+|..+++.......
T Consensus 119 k~wD~R~-~~~~~-----------------~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 119 KFWDPRN-KVVVG-----------------TFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred EEEeccc-ccccc-----------------ccccCceEEEEeccCCEEEEeecCceEEEEEcccccchh
Confidence 9999775 11111 133344555677788888887888899999988755433
No 156
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=48.35 E-value=1.1e+02 Score=26.63 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=33.0
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
.+..+.+..+|+|++.|..+..| +..+. .+ + ..+..+.+.+||++.+-|..+
T Consensus 55 ~~~~l~l~~dGnLvl~~~~g~~v--W~S~~---------~~------~-----------~~~~~~~L~ddGnlvl~~~~~ 106 (116)
T cd00028 55 SSCTLTLQSDGNLVIYDGSGTVV--WSSNT---------TR------V-----------NGNYVLVLLDDGNLVLYDSDG 106 (116)
T ss_pred CCEEEEEecCCCeEEEcCCCcEE--EEecc---------cC------C-----------CCceEEEEeCCCCEEEECCCC
Confidence 56678888899999988755433 33220 00 0 123466788899988877644
No 157
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=48.07 E-value=2.5e+02 Score=26.75 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=43.0
Q ss_pred eeEEEEcCCCcEE-EEe-CCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEE-EEeC
Q 010579 85 PFSVAVSPSGELL-VLD-SENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIY-IADT 161 (507)
Q Consensus 85 P~gIaVd~dG~LY-VaD-s~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIY-VADs 161 (507)
-.+++..|+|+-+ |+- ....+|..++.. +......+. ...+.|..+|+|++. ++..
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~~-----------------~~~n~i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFGT-----------------QPRNTISWSPDGRFLVLAGF 120 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeecC-----------------CCceEEEECCCCCEEEEEEc
Confidence 5688999988743 332 233578888765 211111111 123479999999844 4554
Q ss_pred C--CCeEEEEcCCCcEEE
Q 010579 162 M--NMAIRKISDTGVTTI 177 (507)
Q Consensus 162 ~--N~rIrk~d~~GVstI 177 (507)
+ ++.|..+|......+
T Consensus 121 ~n~~G~l~~wd~~~~~~i 138 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKKKKI 138 (194)
T ss_pred cCCCcEEEEEECCCCEEe
Confidence 4 457888887664444
No 158
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=46.44 E-value=3.6e+02 Score=28.07 Aligned_cols=66 Identities=20% Similarity=0.282 Sum_probs=38.3
Q ss_pred EcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEEEE
Q 010579 90 VSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKI 169 (507)
Q Consensus 90 Vd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~ 169 (507)
++.+|.+|+. ..+++|.-+++.+ ++.. .-. ...+ ....++.|..++ +|.|||.+... .++.+
T Consensus 65 ~~~dg~v~~~-~~~G~i~A~d~~~---g~~~--W~~--~~~~------~~~~~~~~~~~~---~G~i~~g~~~g-~~y~l 126 (370)
T COG1520 65 ADGDGTVYVG-TRDGNIFALNPDT---GLVK--WSY--PLLG------AVAQLSGPILGS---DGKIYVGSWDG-KLYAL 126 (370)
T ss_pred EeeCCeEEEe-cCCCcEEEEeCCC---CcEE--ecc--cCcC------cceeccCceEEe---CCeEEEecccc-eEEEE
Confidence 5557778877 3345777777763 2211 000 0000 112345555444 89999998755 88899
Q ss_pred cC-CC
Q 010579 170 SD-TG 173 (507)
Q Consensus 170 d~-~G 173 (507)
|. +|
T Consensus 127 d~~~G 131 (370)
T COG1520 127 DASTG 131 (370)
T ss_pred ECCCC
Confidence 97 77
No 159
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=46.17 E-value=4e+02 Score=31.91 Aligned_cols=110 Identities=19% Similarity=0.301 Sum_probs=62.8
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 164 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~ 164 (507)
=+.|++|++|+..++-..++-|++++..... ..+.++.-. | ..-.+|+. +++.+++-+.++
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti~~~---------g-------~~v~~ia~--~s~~f~~~s~~~ 76 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETIDIS---------G-------ELVSSIAC--YSNHFLTGSEQN 76 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchhhcc---------C-------ceeEEEee--cccceEEeeccc
Confidence 3489999999844444456888888754210 122222100 0 01224444 355777777788
Q ss_pred eEEEEc-CCC-cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 165 AIRKIS-DTG-VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 165 rIrk~d-~~G-VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
.|.++. +++ --+| -++|..|-.++.++.+|...++-...-.|..++...
T Consensus 77 tv~~y~fps~~~~~i-----------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTI-----------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred eEEEeeCCCCCccce-----------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccc
Confidence 887776 333 1111 234556655555677777777777667777776554
No 160
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=46.17 E-value=4.1e+02 Score=29.54 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=19.5
Q ss_pred eEEEcCCCCEEEEeCCCCeEEEEcCC
Q 010579 147 GLAVDDRGNIYIADTMNMAIRKISDT 172 (507)
Q Consensus 147 GIaVd~dGnIYVADs~N~rIrk~d~~ 172 (507)
-..|.+++++.+.-..|+-|..+...
T Consensus 308 ~FeVShd~~fia~~G~~G~I~lLhak 333 (514)
T KOG2055|consen 308 RFEVSHDSNFIAIAGNNGHIHLLHAK 333 (514)
T ss_pred eeEecCCCCeEEEcccCceEEeehhh
Confidence 45688888877777778888888843
No 161
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=45.57 E-value=2e+02 Score=32.32 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=52.0
Q ss_pred eEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCe
Q 010579 86 FSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMA 165 (507)
Q Consensus 86 ~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~r 165 (507)
..+++||.|--+++-+....|..++..|-- ..+- .+ ....-+.-+.-+.+.+.+.|+.+++=+++..
T Consensus 171 sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd----as~~-----~f----r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 171 SALAVDPSGARFVSGSLDYTVKFWDFQGMD----ASMR-----SF----RQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EEeeecCCCceeeeccccceEEEEeccccc----ccch-----hh----hccCcccccccceeeecCCCCeEEEEecCcc
Confidence 467899999888888888889999876321 1100 00 0001112234468899999998888889999
Q ss_pred EEEEcCCC
Q 010579 166 IRKISDTG 173 (507)
Q Consensus 166 Irk~d~~G 173 (507)
++++|.+|
T Consensus 238 akl~DRdG 245 (641)
T KOG0772|consen 238 AKLLDRDG 245 (641)
T ss_pred eeEEccCC
Confidence 99999999
No 162
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=45.53 E-value=3.7e+02 Score=27.96 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=38.3
Q ss_pred EEEEcCCCc-EE-EEeCC-CCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEEeCC
Q 010579 87 SVAVSPSGE-LL-VLDSE-NSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIADTM 162 (507)
Q Consensus 87 gIaVd~dG~-LY-VaDs~-n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVADs~ 162 (507)
..++.+||. |+ +++.. ..+|++++..+ +....+.... .....++++++|. |++++..
T Consensus 282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~---~~~~~l~~~~----------------~~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADG---GEVRRLTFRG----------------GYNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCC---CCEEEeecCC----------------CCccCeEECCCCCEEEEEEcc
Confidence 446778886 43 44432 34889888763 3333332111 1234567888887 5555543
Q ss_pred --CCeEEEEcCCC
Q 010579 163 --NMAIRKISDTG 173 (507)
Q Consensus 163 --N~rIrk~d~~G 173 (507)
..+|..++.++
T Consensus 343 ~~~~~i~~~d~~~ 355 (417)
T TIGR02800 343 GGGFNIAVMDLDG 355 (417)
T ss_pred CCceEEEEEeCCC
Confidence 34788888543
No 163
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.78 E-value=3.8e+02 Score=27.93 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=45.2
Q ss_pred CeeEEEEcCCCc--EEEEeCCC---CeEEEEeCCCC----CCCccEEEecCCCCccccCCCCcccccC-CCcceEEEcCC
Q 010579 84 EPFSVAVSPSGE--LLVLDSEN---SNIYKISTSLS----PYSRPKLVAGSPEGYYGHVDGRPRGARM-NHPKGLAVDDR 153 (507)
Q Consensus 84 ~P~gIaVd~dG~--LYVaDs~n---~rI~ki~~~g~----~~g~i~~vaG~~~G~~G~~dG~~~~a~f-n~P~GIaVd~d 153 (507)
.-..|.|-++|. +-|+|.+. ++|.+= .++. .++++....+ .+|..-..+. -.-.|+|+- |
T Consensus 75 alSairf~~dG~~fiav~DtG~wfeg~i~rD-a~grl~Gl~dgr~~pm~d--------~~Gqpi~~K~e~DaEGLAvr-d 144 (340)
T COG4246 75 ALSAIRFLPDGSQFIAVTDTGHWFEGKIQRD-ANGRLAGLTDGRLTPMRD--------LDGQPIQEKWEVDAEGLAVR-D 144 (340)
T ss_pred chheeEeccCCceeEEEeecCceEEEEEEec-cCCCcccccccceeeccc--------CCCCCCcchhccccccceEe-c
Confidence 345788888885 55777765 333332 2211 1222222221 1332222222 235699997 8
Q ss_pred CCEEEEeCCCCeEEEEcCCC
Q 010579 154 GNIYIADTMNMAIRKISDTG 173 (507)
Q Consensus 154 GnIYVADs~N~rIrk~d~~G 173 (507)
|..+|+=-.+|||..+-..+
T Consensus 145 G~~~VsfEr~hRI~iyp~~p 164 (340)
T COG4246 145 GDALVSFERDHRIWIYPVPP 164 (340)
T ss_pred CceEEEeeccceeEEeccCC
Confidence 99999888899999887443
No 164
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=44.31 E-value=3.2e+02 Score=30.11 Aligned_cols=113 Identities=20% Similarity=0.205 Sum_probs=74.8
Q ss_pred CCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579 82 GMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 161 (507)
Q Consensus 82 ~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs 161 (507)
++.+...+.-|||.=+|+-+....|..++.+|... +.- .|. +-..-.+|++.+||.-.++-.
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-------~~W---~gv--------r~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-------GNW---EGV--------RDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCCcchh-------hcc---ccc--------ccceeEEEEEcCCCcEEEEEe
Confidence 46788888999999999998889999999984331 111 111 123445899999998444444
Q ss_pred CCCeEEEEcCCC-cE--EEecCcccCCCCCCCCCccCccCCCC-ceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579 162 MNMAIRKISDTG-VT--TIAGGKWSRGVGHVDGPSEDAKFSND-FDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 232 (507)
Q Consensus 162 ~N~rIrk~d~~G-Vs--tIaGG~~g~~~G~~dg~~~~a~f~~P-~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~ 232 (507)
...+|+.++-.. +. .+. ...| ..+. +..++.+.+++-.++-|+-.++....
T Consensus 374 ~d~~i~l~~~e~~~dr~lis-------------------e~~~its~~-iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLIS-------------------EEQPITSFS-ISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred cccceeeechhhhhhhcccc-------------------ccCceeEEE-EcCCCcEEEEEcccCeeEEeecchhh
Confidence 566788888433 21 110 1112 2233 57888999999999999999988433
No 165
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=43.89 E-value=2.3e+02 Score=34.04 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=50.8
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 164 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~ 164 (507)
=.+|+.+|++.++++-+..+.|..++... + ..+.++-|. -..+.|+++||-|..+-+-+..+
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F-~~~~vl~~H----------------~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKT-F-ELLKVLRGH----------------QSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEcccc-c-eeeeeeecc----------------cccccceEECCccCeeeeecCCc
Confidence 45788999999999999899999998752 1 333444332 34688999999999888877777
Q ss_pred eEEEEc
Q 010579 165 AIRKIS 170 (507)
Q Consensus 165 rIrk~d 170 (507)
.|.++.
T Consensus 194 tikvwr 199 (942)
T KOG0973|consen 194 TLKVWR 199 (942)
T ss_pred eEEEEE
Confidence 666655
No 166
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=43.85 E-value=3.6e+02 Score=27.27 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=86.5
Q ss_pred CCCCCceeecceEeEEEecCCcEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCc--EEEEeC
Q 010579 24 ASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGE--LLVLDS 101 (507)
Q Consensus 24 a~~~pa~ivsG~l~~va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~--LYVaDs 101 (507)
...+...+++|.++ -.-.....|.++|+.+..+.+-..+ ...++.-..... .....=.++|+|..|- ||.+..
T Consensus 69 ~~GtG~vVYngslY-Y~~~~s~~IvkydL~t~~v~~~~~L--~~A~~~n~~~y~--~~~~t~iD~AvDE~GLWvIYat~~ 143 (250)
T PF02191_consen 69 WQGTGHVVYNGSLY-YNKYNSRNIVKYDLTTRSVVARREL--PGAGYNNRFPYY--WSGYTDIDFAVDENGLWVIYATED 143 (250)
T ss_pred eccCCeEEECCcEE-EEecCCceEEEEECcCCcEEEEEEC--Ccccccccccee--cCCCceEEEEEcCCCEEEEEecCC
Confidence 34445567788888 4445788999999998876521111 111111000000 0112445889998873 444454
Q ss_pred CCCe--EEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCc-ceEEEcCCCCEEEEeCCC---CeEE-EEcCCC-
Q 010579 102 ENSN--IYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHP-KGLAVDDRGNIYIADTMN---MAIR-KISDTG- 173 (507)
Q Consensus 102 ~n~r--I~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P-~GIaVd~dGnIYVADs~N---~rIr-k~d~~G- 173 (507)
.+++ |-|+++.. .....+.- . .+..+ .|=|+--=|.||+.|+.+ .+|. .||...
T Consensus 144 ~~g~ivvskld~~t--L~v~~tw~-T---------------~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~ 205 (250)
T PF02191_consen 144 NNGNIVVSKLDPET--LSVEQTWN-T---------------SYPKRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTG 205 (250)
T ss_pred CCCcEEEEeeCccc--CceEEEEE-e---------------ccCchhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCC
Confidence 4444 44566531 11111111 1 01111 122222348899999875 4555 566432
Q ss_pred cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEEC
Q 010579 174 VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 228 (507)
Q Consensus 174 VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l 228 (507)
......- .....+.....|-+.+.+..||+-|.|...+..+..
T Consensus 206 ~~~~~~i------------~f~~~~~~~~~l~YNP~dk~LY~wd~G~~v~Y~v~f 248 (250)
T PF02191_consen 206 KEEDVSI------------PFPNPYGNISMLSYNPRDKKLYAWDNGYQVTYDVRF 248 (250)
T ss_pred ceeceee------------eeccccCceEeeeECCCCCeEEEEECCeEEEEEEEe
Confidence 1111000 001123344567788889999999987766666543
No 167
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=43.42 E-value=3.1e+02 Score=28.87 Aligned_cols=98 Identities=22% Similarity=0.204 Sum_probs=0.0
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEE
Q 010579 88 VAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIR 167 (507)
Q Consensus 88 IaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIr 167 (507)
++.+.+|.|+..|..+++++--.. +..+..++++ +|.||+++ .+++|.
T Consensus 260 y~~~~~g~l~ald~~tG~~~W~~~------------------------------~~~~~~~~~~-~~~vy~~~-~~g~l~ 307 (394)
T PRK11138 260 YALAYNGNLVALDLRSGQIVWKRE------------------------------YGSVNDFAVD-GGRIYLVD-QNDRVY 307 (394)
T ss_pred EEEEcCCeEEEEECCCCCEEEeec------------------------------CCCccCcEEE-CCEEEEEc-CCCeEE
Q ss_pred EEc-CCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEE
Q 010579 168 KIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 224 (507)
Q Consensus 168 k~d-~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr 224 (507)
.++ .+|...-. .....+.......-...-|.+.+.+|.|++.|..++++.
T Consensus 308 ald~~tG~~~W~-------~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 308 ALDTRGGVELWS-------QSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EEECCCCcEEEc-------ccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEE
No 168
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=43.12 E-value=2.9e+02 Score=31.88 Aligned_cols=122 Identities=19% Similarity=0.235 Sum_probs=78.4
Q ss_pred CCeeEEEE-cCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCc------cccCCCCcccccCCCcceEEEcCCCC
Q 010579 83 MEPFSVAV-SPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGY------YGHVDGRPRGARMNHPKGLAVDDRGN 155 (507)
Q Consensus 83 ~~P~gIaV-d~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~------~G~~dG~~~~a~fn~P~GIaVd~dGn 155 (507)
.+=..|++ .++.+++++-.-.++|..++.+. +...++ ++.... .|. -..-..+|..+.|.
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~---~~~~l~-~s~n~~t~~sl~sG~---------k~siYSLA~N~t~t 184 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINT---GTATLV-ASFNNVTVNSLGSGP---------KDSIYSLAMNQTGT 184 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccC---cchhhh-hhccccccccCCCCC---------ccceeeeecCCcce
Confidence 34556777 67778888888889999999873 222122 121110 122 12234788888999
Q ss_pred EEEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 010579 156 IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDD 232 (507)
Q Consensus 156 IYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~ 232 (507)
++|+=..+..||.+|... +.-+.| +.| +-..|. +.++|.-.+.-+..+.|+..++....
T Consensus 185 ~ivsGgtek~lr~wDprt~~kimkLrG--------HTd---------NVr~ll-~~dDGt~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKKIMKLRG--------HTD---------NVRVLL-VNDDGTRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred EEEecCcccceEEeccccccceeeeec--------ccc---------ceEEEE-EcCCCCeEeecCCCceEEeeeccccc
Confidence 999988899999999654 333432 112 122343 56777777777778888888888877
Q ss_pred eee
Q 010579 233 CSD 235 (507)
Q Consensus 233 ~~~ 235 (507)
|..
T Consensus 247 Cl~ 249 (735)
T KOG0308|consen 247 CLA 249 (735)
T ss_pred eee
Confidence 754
No 169
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=42.14 E-value=2.6e+02 Score=29.74 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=51.9
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNM 164 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~ 164 (507)
...+.|++-|.+..+-+.|+||+.++..+ -++..+.+ +...--..|+-+++|...++.+..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T---~~iar~ls---------------aH~~pi~sl~WS~dgr~LltsS~D~ 87 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT---FRIARMLS---------------AHVRPITSLCWSRDGRKLLTSSRDW 87 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc---cchhhhhh---------------ccccceeEEEecCCCCEeeeecCCc
Confidence 44667888999999999999999999862 11111111 1233346899999999999999988
Q ss_pred eEEEEc-CCC
Q 010579 165 AIRKIS-DTG 173 (507)
Q Consensus 165 rIrk~d-~~G 173 (507)
.|..+| ..|
T Consensus 88 si~lwDl~~g 97 (405)
T KOG1273|consen 88 SIKLWDLLKG 97 (405)
T ss_pred eeEEEeccCC
Confidence 999888 445
No 170
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=41.59 E-value=5e+02 Score=30.37 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=21.4
Q ss_pred ceEEEcCCCCEEEEeCCCCeEEEEc-CCC--cEEEe
Q 010579 146 KGLAVDDRGNIYIADTMNMAIRKIS-DTG--VTTIA 178 (507)
Q Consensus 146 ~GIaVd~dGnIYVADs~N~rIrk~d-~~G--VstIa 178 (507)
.-+.+.|+.+...+-+..+.||..| ..| |..+.
T Consensus 539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred ceEEECCcccccccCCCCceEEEEEcCCCcEEEEec
Confidence 3478888877655555567788888 344 45443
No 171
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=40.64 E-value=1.2e+02 Score=32.55 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=46.2
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEE-eCCCCCCCc-cEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKI-STSLSPYSR-PKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki-~~~g~~~g~-i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
=..|+|+++|.+..+-+.+++|.|+ +-. .|. +.-+. .| .....-..|++++++.+..|-+.
T Consensus 176 lAalafs~~G~llATASeKGTVIRVf~v~---~G~kl~eFR------RG--------~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTVIRVFSVP---EGQKLYEFR------RG--------TYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred eeEEEECCCCCEEEEeccCceEEEEEEcC---CccEeeeee------CC--------ceeeEEEEEEECCCCCeEEEecC
Confidence 4578999999999999998876664 332 111 11110 11 11234568999999998888888
Q ss_pred CCeEEEEc
Q 010579 163 NMAIRKIS 170 (507)
Q Consensus 163 N~rIrk~d 170 (507)
+..|++|.
T Consensus 239 TeTVHiFK 246 (391)
T KOG2110|consen 239 TETVHIFK 246 (391)
T ss_pred CCeEEEEE
Confidence 88888766
No 172
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.26 E-value=4.2e+02 Score=31.97 Aligned_cols=137 Identities=20% Similarity=0.210 Sum_probs=79.3
Q ss_pred eeEEeecCCCCCCCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEE
Q 010579 71 TVETVFEGSKFGMEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAV 150 (507)
Q Consensus 71 ~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaV 150 (507)
.+..+++|...+.+ -++|.|.--|+|+-.....|..+..+-...-.+. -+.| .+|.-.++.+
T Consensus 197 VVK~VLEGHDRGVN--waAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD-------tcrg---------H~nnVssvlf 258 (1202)
T KOG0292|consen 197 VVKHVLEGHDRGVN--WAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD-------TCRG---------HYNNVSSVLF 258 (1202)
T ss_pred eeeeeecccccccc--eEEecCCcceEEecCCcceeeEEEeccccceeeh-------hhhc---------ccCCcceEEe
Confidence 34556666666543 5678887678888776666655555421111111 2333 3677889999
Q ss_pred cCCCCEEEEeCCCCeEEEEcCCC---cEEE----------ecC--cccCCCCCCCCCccCccCC-CCceEEEEcCCCeEE
Q 010579 151 DDRGNIYIADTMNMAIRKISDTG---VTTI----------AGG--KWSRGVGHVDGPSEDAKFS-NDFDVVYVGSSCSLL 214 (507)
Q Consensus 151 d~dGnIYVADs~N~rIrk~d~~G---VstI----------aGG--~~g~~~G~~dg~~~~a~f~-~P~gIa~vd~~G~Ly 214 (507)
++.-++.++.+....||+.|.+. |.++ +-- .+-.+.|++.|.-. -++. .+-..+ +..++-.|
T Consensus 259 hp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~V-FkleRErpa~~-v~~n~LfY 336 (1202)
T KOG0292|consen 259 HPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIV-FKLERERPAYA-VNGNGLFY 336 (1202)
T ss_pred cCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEE-EEEcccCceEE-EcCCEEEE
Confidence 99889999999888899888332 4333 221 11223455555321 1222 233334 44555556
Q ss_pred EEeCCCCeEEEEECCC
Q 010579 215 VIDRGNQAIREIQLHD 230 (507)
Q Consensus 215 VaD~gn~rIr~I~l~~ 230 (507)
|-| ..||.+++.+
T Consensus 337 vkd---~~i~~~d~~t 349 (1202)
T KOG0292|consen 337 VKD---RFIRSYDLRT 349 (1202)
T ss_pred Ecc---ceEEeeeccc
Confidence 654 6788888766
No 173
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=39.66 E-value=4.1e+02 Score=28.02 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=53.5
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
.=+.|.+-|+|.-|++-+.+...+.++.-- ..++.++.... ....-++++++..|.|.+|-+.+
T Consensus 231 DINsv~ffP~G~afatGSDD~tcRlyDlRa--D~~~a~ys~~~--------------~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 231 DINSVRFFPSGDAFATGSDDATCRLYDLRA--DQELAVYSHDS--------------IICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred ccceEEEccCCCeeeecCCCceeEEEeecC--CcEEeeeccCc--------------ccCCceeEEEcccccEEEeeecC
Confidence 345788889999888888888777777641 12333333211 12334689999999999998777
Q ss_pred CeEEEEcC-CC--cEEEec
Q 010579 164 MAIRKISD-TG--VTTIAG 179 (507)
Q Consensus 164 ~rIrk~d~-~G--VstIaG 179 (507)
..+.+.|. .+ +.++.|
T Consensus 295 ~~c~vWDtlk~e~vg~L~G 313 (343)
T KOG0286|consen 295 FTCNVWDTLKGERVGVLAG 313 (343)
T ss_pred CceeEeeccccceEEEeec
Confidence 78888883 33 555543
No 174
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=38.86 E-value=63 Score=21.69 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.1
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEe
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKIS 110 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~ 110 (507)
.-..|++.+++.++++-+..+.|+.++
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 567999999999988888888988875
No 175
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=38.61 E-value=1.9e+02 Score=25.14 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=33.9
Q ss_pred CcceEEEcCCCCEEEEeCCCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeE
Q 010579 144 HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 223 (507)
Q Consensus 144 ~P~GIaVd~dGnIYVADs~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rI 223 (507)
.+.-+.++.+|+|++.|..+..|..=+..+ ......+.+.++|+|.+.|..+..|
T Consensus 55 ~~~~l~l~~dGnLvl~~~~g~~vW~S~~~~-------------------------~~~~~~~~L~ddGnlvl~~~~~~~~ 109 (116)
T cd00028 55 SSCTLTLQSDGNLVIYDGSGTVVWSSNTTR-------------------------VNGNYVLVLLDDGNLVLYDSDGNFL 109 (116)
T ss_pred CCEEEEEecCCCeEEEcCCCcEEEEecccC-------------------------CCCceEEEEeCCCCEEEECCCCCEE
Confidence 345688889999999987654433211111 0111223467889999888765555
Q ss_pred E
Q 010579 224 R 224 (507)
Q Consensus 224 r 224 (507)
+
T Consensus 110 W 110 (116)
T cd00028 110 W 110 (116)
T ss_pred E
Confidence 4
No 176
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=37.48 E-value=4.8e+02 Score=26.94 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=17.3
Q ss_pred eEEEcCCCCEEEEeCCCCeEEEEcC-CC
Q 010579 147 GLAVDDRGNIYIADTMNMAIRKISD-TG 173 (507)
Q Consensus 147 GIaVd~dGnIYVADs~N~rIrk~d~-~G 173 (507)
..+++ ++.||+++ .+++|..+|. +|
T Consensus 274 ~p~~~-~~~vyv~~-~~G~l~~~d~~tG 299 (377)
T TIGR03300 274 GPAVD-DNRLYVTD-ADGVVVALDRRSG 299 (377)
T ss_pred CceEe-CCEEEEEC-CCCeEEEEECCCC
Confidence 44454 57899986 4678888884 45
No 177
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.36 E-value=7.7e+02 Score=28.67 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=65.5
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
.+|..|+.+|+|...++ ++.+.-..++.- +..... |..-...+..+|-+.|..-..
T Consensus 352 iyPq~L~hsPNGrfV~V-cgdGEyiIyTal-----------a~RnK~------------fG~~~eFvw~~dsne~avRes 407 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVV-CGDGEYIIYTAL-----------ALRNKA------------FGSGLEFVWAADSNEFAVRES 407 (794)
T ss_pred cchHHhccCCCCcEEEE-ecCccEEEEEee-----------ehhhcc------------cccceeEEEcCCCCeEEEEec
Confidence 57888888887765443 334443344321 111111 222334555556566666555
Q ss_pred CCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeC-CCCeEEEEECCCCceeeCCCC
Q 010579 163 NMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR-GNQAIREIQLHDDDCSDNYDD 239 (507)
Q Consensus 163 N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~-gn~rIr~I~l~~~~~~~~~~~ 239 (507)
|..|..+ .+. ...+-- +. ....+..+.=+. +.+++.|.+.|. ....||+|+...+...+. .+
T Consensus 408 ~~~vki~-knfke~ksi~~----------~~--~~e~i~gg~Llg-~~ss~~~~fydW~~~~lVrrI~v~~k~v~w~-d~ 472 (794)
T KOG0276|consen 408 NGNVKIF-KNFKEHKSIRP----------DM--SAEGIFGGPLLG-VRSSDFLCFYDWESGELVRRIEVTSKHVYWS-DN 472 (794)
T ss_pred CCceEEE-ecceecccccc----------cc--ceeeecCCceEE-EEeCCeEEEEEcccceEEEEEeeccceeEEe-cC
Confidence 5556555 333 222210 00 011234444454 457788999994 556789999877765543 33
Q ss_pred CccceEEEEe
Q 010579 240 TFHLGIFVLV 249 (507)
Q Consensus 240 G~p~gIa~~~ 249 (507)
|.-..|+.+.
T Consensus 473 g~lVai~~d~ 482 (794)
T KOG0276|consen 473 GELVAIAGDD 482 (794)
T ss_pred CCEEEEEecC
Confidence 4334444443
No 178
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=35.16 E-value=43 Score=21.33 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.0
Q ss_pred CCcceEEEcCCCCEEEEe
Q 010579 143 NHPKGLAVDDRGNIYIAD 160 (507)
Q Consensus 143 n~P~GIaVd~dGnIYVAD 160 (507)
+.-..|+.|++|+|||+-
T Consensus 5 n~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp SCEEEEEE-TTSCEEEEE
T ss_pred CeEEEEEEcCCcCEEEEe
Confidence 355689999999999985
No 179
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=33.98 E-value=3.5e+02 Score=28.05 Aligned_cols=9 Identities=22% Similarity=0.209 Sum_probs=6.0
Q ss_pred CCeEEEEeC
Q 010579 103 NSNIYKIST 111 (507)
Q Consensus 103 n~rI~ki~~ 111 (507)
+.|.+.|++
T Consensus 107 ~kRtY~F~L 115 (292)
T PRK13861 107 GMRRYVFSI 115 (292)
T ss_pred CcEEEEEEE
Confidence 447777765
No 180
>PRK04043 tolB translocation protein TolB; Provisional
Probab=32.88 E-value=6.6e+02 Score=27.14 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=35.9
Q ss_pred EEEcCCCc-EEEEeC--CCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEE-EeCC
Q 010579 88 VAVSPSGE-LLVLDS--ENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYI-ADTM 162 (507)
Q Consensus 88 IaVd~dG~-LYVaDs--~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYV-ADs~ 162 (507)
..++|||. |.++.. ++..|+.++..+ +....+.... +. + ....+++||+ ||+ +|..
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~---g~~~~LT~~~-~~----d-----------~~p~~SPDG~~I~F~Sdr~ 298 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNT---KTLTQITNYP-GI----D-----------VNGNFVEDDKRIVFVSDRL 298 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCC---CcEEEcccCC-Cc----c-----------CccEECCCCCEEEEEECCC
Confidence 45788885 544432 346888888763 3333322111 00 0 1235788886 444 4433
Q ss_pred -CCeEEEEcCCC
Q 010579 163 -NMAIRKISDTG 173 (507)
Q Consensus 163 -N~rIrk~d~~G 173 (507)
...|.+++.++
T Consensus 299 g~~~Iy~~dl~~ 310 (419)
T PRK04043 299 GYPNIFMKKLNS 310 (419)
T ss_pred CCceEEEEECCC
Confidence 34788888544
No 181
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=32.34 E-value=6.5e+02 Score=26.91 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=41.1
Q ss_pred EEcCCCCEEEEeCCCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEEC
Q 010579 149 AVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQL 228 (507)
Q Consensus 149 aVd~dGnIYVADs~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l 228 (507)
.+|+.|+..++-+..+.+.+++......++.-+-. ....-..|. +.-.|+.++.++....||.++.
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit-------------s~~~IK~I~-~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT-------------SVQAIKQII-VSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchheeeeeeeec-------------hheeeeEEE-EeccCcEEEEecCCceEEEEeh
Confidence 45666666666666666666665554444321110 012233455 5778899999999999999886
Q ss_pred C
Q 010579 229 H 229 (507)
Q Consensus 229 ~ 229 (507)
.
T Consensus 226 ~ 226 (405)
T KOG1273|consen 226 S 226 (405)
T ss_pred h
Confidence 5
No 182
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.34 E-value=5.5e+02 Score=28.61 Aligned_cols=110 Identities=13% Similarity=0.131 Sum_probs=65.2
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCcc-EEEecCCCCccccCCCCcccccCCCcc-eEEEcCCCC-EEEEeC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRP-KLVAGSPEGYYGHVDGRPRGARMNHPK-GLAVDDRGN-IYIADT 161 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i-~~vaG~~~G~~G~~dG~~~~a~fn~P~-GIaVd~dGn-IYVADs 161 (507)
-+++.|-.||.|+.+--..+.|.+|+... ..+ ..+-+. ..|. -+-+.+.++ ++++-.
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~---r~iLR~~~ah-----------------~apv~~~~f~~~d~t~l~s~s 130 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKS---RVILRQLYAH-----------------QAPVHVTKFSPQDNTMLVSGS 130 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEecccc---HHHHHHHhhc-----------------cCceeEEEecccCCeEEEecC
Confidence 45788889999999988889999999541 111 111111 2333 344555555 555443
Q ss_pred CCCeEEEEcCCC--cE-EEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 010579 162 MNMAIRKISDTG--VT-TIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDD 231 (507)
Q Consensus 162 ~N~rIrk~d~~G--Vs-tIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~ 231 (507)
...-++..|-++ |. .+.| +.| .-.+.++.+.++.++|+-...+.||..+....
T Consensus 131 Dd~v~k~~d~s~a~v~~~l~~--------htD---------YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 131 DDKVVKYWDLSTAYVQAELSG--------HTD---------YVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred CCceEEEEEcCCcEEEEEecC--------Ccc---------eeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 343444444444 32 2322 111 12233456778889999999999999988776
No 183
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=32.14 E-value=3.1e+02 Score=29.30 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=40.3
Q ss_pred EEEcCCCc-EEEEeCCCC---------eEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-E
Q 010579 88 VAVSPSGE-LLVLDSENS---------NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-I 156 (507)
Q Consensus 88 IaVd~dG~-LYVaDs~n~---------rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-I 156 (507)
+++++||. +|++++.-. -|..++..+ .....-. ....+.+...+..+.-+++..||. +
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-----L~~~~EI------~iP~k~R~~~~~~~~~~~ls~dgk~~ 109 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-----LSPTGEI------EIPPKPRAQVVPYKNMFALSADGKFL 109 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-----TEEEEEE------EETTS-B--BS--GGGEEE-TTSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-----CcccceE------ecCCcchheecccccceEEccCCcEE
Confidence 67888875 888876543 366666542 1111100 001111122356888999998887 8
Q ss_pred EEEeCC-CCeEEEEcCCC
Q 010579 157 YIADTM-NMAIRKISDTG 173 (507)
Q Consensus 157 YVADs~-N~rIrk~d~~G 173 (507)
||.... ...|-++|...
T Consensus 110 ~V~N~TPa~SVtVVDl~~ 127 (342)
T PF06433_consen 110 YVQNFTPATSVTVVDLAA 127 (342)
T ss_dssp EEEEESSSEEEEEEETTT
T ss_pred EEEccCCCCeEEEEECCC
Confidence 998765 55688888544
No 184
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.97 E-value=2.3e+02 Score=29.76 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=48.1
Q ss_pred CCeeEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC
Q 010579 83 MEPFSVAVSPSGE-LLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT 161 (507)
Q Consensus 83 ~~P~gIaVd~dG~-LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs 161 (507)
.+--+||++.+|. +.++-...+++..|+.. ++++... ..+..-.||+..++| |++-+
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~---tg~~~~~-----------------~~l~D~cGva~~~~~--f~~ss 274 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAA---TGRLLGS-----------------VPLPDACGVAPTDDG--FLVSS 274 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECC---CCCEeec-----------------cccCceeeeeecCCc--eEEeC
Confidence 4667899999886 55777778999999765 2332221 124445588888887 77777
Q ss_pred CCCeEEEEcCCC
Q 010579 162 MNMAIRKISDTG 173 (507)
Q Consensus 162 ~N~rIrk~d~~G 173 (507)
+...+..++..+
T Consensus 275 G~G~~~~~~~~~ 286 (305)
T PF07433_consen 275 GQGQLIRLSPDG 286 (305)
T ss_pred CCccEEEccCcc
Confidence 787888777655
No 185
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.84 E-value=9.6e+02 Score=29.17 Aligned_cols=129 Identities=22% Similarity=0.275 Sum_probs=74.5
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCC--------CCccEEEecCCCC---ccccCCCCcccccCC-CcceEEE
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSP--------YSRPKLVAGSPEG---YYGHVDGRPRGARMN-HPKGLAV 150 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~--------~g~i~~vaG~~~G---~~G~~dG~~~~a~fn-~P~GIaV 150 (507)
++=.++.++|.-+|.++.+....|++++++.-. .++.-.++-.+.. ..|+..|. .--++. .+-..|+
T Consensus 251 nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm-~VFkleRErpa~~v 329 (1202)
T KOG0292|consen 251 NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGM-IVFKLERERPAYAV 329 (1202)
T ss_pred CCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCce-EEEEEcccCceEEE
Confidence 456688899988899999999999999986221 2333334433321 13442232 212232 4556778
Q ss_pred cCCCCEEEEeCCCCeEEEEcCCC--cEEEecCcccCCCCCCCCCccCccC-CCCceEEEEcCCCeEEEE---eCCCCeEE
Q 010579 151 DDRGNIYIADTMNMAIRKISDTG--VTTIAGGKWSRGVGHVDGPSEDAKF-SNDFDVVYVGSSCSLLVI---DRGNQAIR 224 (507)
Q Consensus 151 d~dGnIYVADs~N~rIrk~d~~G--VstIaGG~~g~~~G~~dg~~~~a~f-~~P~gIa~vd~~G~LyVa---D~gn~rIr 224 (507)
..++.+||-| .+|+.+|-.. =+.++.-+. .| .+ ..|..+.+.+..+.++++ |.+.-.+.
T Consensus 330 ~~n~LfYvkd---~~i~~~d~~t~~d~~v~~lr~---~g---------~~~~~~~smsYNpae~~vlics~~~n~~y~L~ 394 (1202)
T KOG0292|consen 330 NGNGLFYVKD---RFIRSYDLRTQKDTAVASLRR---PG---------TLWQPPRSLSYNPAENAVLICSNLDNGEYELV 394 (1202)
T ss_pred cCCEEEEEcc---ceEEeeeccccccceeEeccC---CC---------cccCCcceeeeccccCeEEEEeccCCCeEEEE
Confidence 7777778864 5688888333 122222111 11 12 245678888888888888 43333444
Q ss_pred EEE
Q 010579 225 EIQ 227 (507)
Q Consensus 225 ~I~ 227 (507)
.|.
T Consensus 395 ~ip 397 (1202)
T KOG0292|consen 395 QIP 397 (1202)
T ss_pred Eec
Confidence 443
No 186
>PRK01029 tolB translocation protein TolB; Provisional
Probab=31.56 E-value=6.9e+02 Score=26.95 Aligned_cols=25 Identities=8% Similarity=0.180 Sum_probs=16.3
Q ss_pred eEEEcCCCC--EEEEeC-CCCeEEEEcC
Q 010579 147 GLAVDDRGN--IYIADT-MNMAIRKISD 171 (507)
Q Consensus 147 GIaVd~dGn--IYVADs-~N~rIrk~d~ 171 (507)
..++++||. +|++|. ++.+|..++.
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 468899997 445554 3456777763
No 187
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=29.81 E-value=6e+02 Score=25.68 Aligned_cols=73 Identities=23% Similarity=0.293 Sum_probs=40.8
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCccE---EEecCCCCccccCCCCcccccCCCcceEEEcCCCC--EEEEeCCC--Ce
Q 010579 93 SGELLVLDSENSNIYKISTSLSPYSRPK---LVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN--IYIADTMN--MA 165 (507)
Q Consensus 93 dG~LYVaDs~n~rI~ki~~~g~~~g~i~---~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn--IYVADs~N--~r 165 (507)
+|.||.--....+|.|++... +.+. .+-+. +..+ -..-...=..=.++|+|..|. ||-+...+ -.
T Consensus 78 ngslYY~~~~s~~IvkydL~t---~~v~~~~~L~~A--~~~n---~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~iv 149 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTT---RSVVARRELPGA--GYNN---RFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIV 149 (250)
T ss_pred CCcEEEEecCCceEEEEECcC---CcEEEEEECCcc--cccc---ccceecCCCceEEEEEcCCCEEEEEecCCCCCcEE
Confidence 678999888889999999973 3333 11111 1100 000000001124799998886 55555443 45
Q ss_pred EEEEcCCC
Q 010579 166 IRKISDTG 173 (507)
Q Consensus 166 Irk~d~~G 173 (507)
|-|+|+..
T Consensus 150 vskld~~t 157 (250)
T PF02191_consen 150 VSKLDPET 157 (250)
T ss_pred EEeeCccc
Confidence 66888766
No 188
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=28.31 E-value=9e+02 Score=27.28 Aligned_cols=112 Identities=20% Similarity=0.260 Sum_probs=58.6
Q ss_pred eeEEEEc-CCC-cEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcC-CCCEEEEeC
Q 010579 85 PFSVAVS-PSG-ELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDD-RGNIYIADT 161 (507)
Q Consensus 85 P~gIaVd-~dG-~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~-dGnIYVADs 161 (507)
|.++++. .|| .|-|-|...+.+.++..+ .|.+..+.-+. +|. -+++.+ .+.|||-|-
T Consensus 371 ~e~~vigt~dgD~l~iyd~~~~e~kr~e~~---lg~I~av~vs~-------dGK----------~~vvaNdr~el~vidi 430 (668)
T COG4946 371 PEGDVIGTNDGDKLGIYDKDGGEVKRIEKD---LGNIEAVKVSP-------DGK----------KVVVANDRFELWVIDI 430 (668)
T ss_pred CcceEEeccCCceEEEEecCCceEEEeeCC---ccceEEEEEcC-------CCc----------EEEEEcCceEEEEEEe
Confidence 3344443 244 455666666666666665 24443333222 221 133333 455788787
Q ss_pred CCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCC
Q 010579 162 MNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHD 230 (507)
Q Consensus 162 ~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~ 230 (507)
.|..++.+|... ++-++...+++ ......|.|.. ..+|-+.|..+++|..+....
T Consensus 431 dngnv~~idkS~~~lItdf~~~~nsr----------~iAYafP~gy~----tq~Iklydm~~~Kiy~vTT~t 488 (668)
T COG4946 431 DNGNVRLIDKSEYGLITDFDWHPNSR----------WIAYAFPEGYY----TQSIKLYDMDGGKIYDVTTPT 488 (668)
T ss_pred cCCCeeEecccccceeEEEEEcCCce----------eEEEecCccee----eeeEEEEecCCCeEEEecCCc
Confidence 777788888443 44443322111 11123344443 236778888888888887543
No 189
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=28.03 E-value=5.1e+02 Score=24.30 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=58.7
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEe--cCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVA--GSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~va--G~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
+..++++ ++.+|+... ++.|+.+++. +|.+.--. +.+.+. ..-..+....+-.+-.+|.||+++..
T Consensus 115 ~~~~~~~-~~~~~~~~~-~g~l~~~d~~---tG~~~w~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (238)
T PF13360_consen 115 SSSPAVD-GDRLYVGTS-SGKLVALDPK---TGKLLWKYPVGEPRGS-------SPISSFSDINGSPVISDGRVYVSSGD 182 (238)
T ss_dssp -SEEEEE-TTEEEEEET-CSEEEEEETT---TTEEEEEEESSTT-SS---------EEEETTEEEEEECCTTEEEEECCT
T ss_pred ccCceEe-cCEEEEEec-cCcEEEEecC---CCcEEEEeecCCCCCC-------cceeeecccccceEEECCEEEEEcCC
Confidence 3344554 335666654 6788888876 34432111 111000 00001222233333335688888765
Q ss_pred CCeEEEEc-CCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579 163 NMAIRKIS-DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 234 (507)
Q Consensus 163 N~rIrk~d-~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~ 234 (507)
.. +..+| ..|..... . .+.....+. ...++.||+.+ ..+.|..+++.++...
T Consensus 183 g~-~~~~d~~tg~~~w~--~---------------~~~~~~~~~-~~~~~~l~~~~-~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 183 GR-VVAVDLATGEKLWS--K---------------PISGIYSLP-SVDGGTLYVTS-SDGRLYALDLKTGKVV 235 (238)
T ss_dssp SS-EEEEETTTTEEEEE--E---------------CSS-ECECE-ECCCTEEEEEE-TTTEEEEEETTTTEEE
T ss_pred Ce-EEEEECCCCCEEEE--e---------------cCCCccCCc-eeeCCEEEEEe-CCCEEEEEECCCCCEE
Confidence 54 44456 33421111 0 011222322 46778899888 6799999998876544
No 190
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.95 E-value=6.8e+02 Score=27.30 Aligned_cols=54 Identities=9% Similarity=0.069 Sum_probs=36.0
Q ss_pred ccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceee---CCCCCccceEEEEec
Q 010579 196 AKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSD---NYDDTFHLGIFVLVA 250 (507)
Q Consensus 196 a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~---~~~~G~p~gIa~~~~ 250 (507)
..++.-..++ ++.+|.+...-+..+.|-.++...-.|.+ ..-.++.+++.....
T Consensus 279 ~~~~siSsl~-VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 279 KRFKSISSLA-VSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred hccCcceeEE-EcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence 3455667777 57888888888888888888887766554 222335555555543
No 191
>PRK02710 plastocyanin; Provisional
Probab=27.30 E-value=4.3e+02 Score=23.25 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=7.6
Q ss_pred ChhhHHHHHHHHHHHHh
Q 010579 1 MVRNLVVFLLILVFFFG 17 (507)
Q Consensus 1 M~r~~l~llllLlLll~ 17 (507)
|.|++++++..++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (119)
T PRK02710 1 MAKRLRSIAAALVAVVS 17 (119)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 55555444443333333
No 192
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.12 E-value=6.1e+02 Score=27.00 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=36.3
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC-EEEE
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-IYIA 159 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-IYVA 159 (507)
.=++|++.|.|.|-++-.+.+.++.+++- .|+..-+.- -=+.+.-|-+++.|. ++|.
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV---~Gr~a~v~~----------------L~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGDQVLRTWNLV---RGRVAFVLN----------------LKNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred ccceeEecCCCceEEEEcCCceeeeehhh---cCccceeec----------------cCCcceeeEEcCCCCEEEEE
Confidence 35678888888888887777777777764 122211111 113566799999998 4444
No 193
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=26.89 E-value=3e+02 Score=30.65 Aligned_cols=109 Identities=8% Similarity=0.157 Sum_probs=71.6
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeEEEEcCC
Q 010579 93 SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAIRKISDT 172 (507)
Q Consensus 93 dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rIrk~d~~ 172 (507)
.|.|+.+-...+.|..++.-.. .+-+.++.|... --..+++..+|.=|++-+...-|...|..
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k----------------~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRK----------------PVRDASFNNCGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred eeeEEEecCCCceEEEEEEecC-cceehhhhcchh----------------hhhhhhccccCCeeeeeecceeeeeeccc
Confidence 5677777777778887775421 122344444321 12467788888888888888888888853
Q ss_pred -Cc--EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeC
Q 010579 173 -GV--TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDN 236 (507)
Q Consensus 173 -GV--stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~ 236 (507)
|. ..+--+ .-|.+|-+-+++.+++++-..+.+|+.+|...+.+...
T Consensus 289 TG~~~~~f~~~------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 289 TGQVLSRFHLD------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred cceEEEEEecC------------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH
Confidence 42 222111 13566666556679999999999999999998776543
No 194
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=26.70 E-value=1.9e+02 Score=30.84 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=52.6
Q ss_pred CcceEEEcCCCCEEEEeCCCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeE
Q 010579 144 HPKGLAVDDRGNIYIADTMNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAI 223 (507)
Q Consensus 144 ~P~GIaVd~dGnIYVADs~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rI 223 (507)
.-+++++..||.-+++-++...||.++.+-...-+-. -...+..+..|.-|++.++-.++.|+-...+.|
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr----------~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR----------CIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhh----------HhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 4568999999998888888888998885542111000 012233456899999866666777777778888
Q ss_pred EEEECCC
Q 010579 224 REIQLHD 230 (507)
Q Consensus 224 r~I~l~~ 230 (507)
+.+.+..
T Consensus 158 ~vyk~~K 164 (420)
T KOG2096|consen 158 CVYKLVK 164 (420)
T ss_pred EEEEeee
Confidence 8887654
No 195
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=25.76 E-value=8.3e+02 Score=25.99 Aligned_cols=59 Identities=27% Similarity=0.290 Sum_probs=31.4
Q ss_pred ceEEEcCCCC-EEEEeCCCCeEEEEc--CCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCe
Q 010579 146 KGLAVDDRGN-IYIADTMNMAIRKIS--DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQA 222 (507)
Q Consensus 146 ~GIaVd~dGn-IYVADs~N~rIrk~d--~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~r 222 (507)
.++.+. |+ .||||..+. ...+| +-.--+++|..... ++ .-+++++ +.+.-||++++++.
T Consensus 132 ygv~vs--Gn~aYVadlddg-fLivdvsdpssP~lagrya~~-----~~--------d~~~v~I--SGn~AYvA~~d~GL 193 (370)
T COG5276 132 YGVYVS--GNYAYVADLDDG-FLIVDVSDPSSPQLAGRYALP-----GG--------DTHDVAI--SGNYAYVAWRDGGL 193 (370)
T ss_pred EEEEec--CCEEEEeeccCc-EEEEECCCCCCceeeeeeccC-----CC--------CceeEEE--ecCeEEEEEeCCCe
Confidence 455554 65 999997443 33444 22223444432211 11 1156664 56689999887653
No 196
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=25.64 E-value=6.8e+02 Score=28.36 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=42.5
Q ss_pred ceEEEcCCCCEEEEeCCCCeEEEEcC-CC--cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCC-eEEEEeCCCC
Q 010579 146 KGLAVDDRGNIYIADTMNMAIRKISD-TG--VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSC-SLLVIDRGNQ 221 (507)
Q Consensus 146 ~GIaVd~dGnIYVADs~N~rIrk~d~-~G--VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G-~LyVaD~gn~ 221 (507)
..+++.+|-++.++-...+.|++.|- +. |..+. |+.||. .+|. +..+| +|| +---.+
T Consensus 513 yALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq--------GhtDGa---------scId-is~dGtklW-TGGlDn 573 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ--------GHTDGA---------SCID-ISKDGTKLW-TGGLDN 573 (705)
T ss_pred hhhhcCCccceeeeeccCCcEEEEEcccceeeeccc--------CCCCCc---------eeEE-ecCCCceee-cCCCcc
Confidence 36888889898888887777888883 33 44442 444552 2444 34445 455 444567
Q ss_pred eEEEEECCC
Q 010579 222 AIREIQLHD 230 (507)
Q Consensus 222 rIr~I~l~~ 230 (507)
.||..|+..
T Consensus 574 tvRcWDlre 582 (705)
T KOG0639|consen 574 TVRCWDLRE 582 (705)
T ss_pred ceeehhhhh
Confidence 888888765
No 197
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=25.56 E-value=3.2e+02 Score=29.36 Aligned_cols=83 Identities=22% Similarity=0.369 Sum_probs=52.6
Q ss_pred CCeeEEEEcCCCcEEEEeCCCC-----eEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCC--
Q 010579 83 MEPFSVAVSPSGELLVLDSENS-----NIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGN-- 155 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~-----rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGn-- 155 (507)
-.|+.++.-.+|.+|++.-..+ +|+-|... +..+.+++...-+. ..|. ..+-..-..+.+|.+||
T Consensus 183 Tf~yNmgAl~nGH~Y~asLSG~~~SPLKiY~w~tP---ts~PevIa~inV~~---I~gA--g~RhGDn~S~nlD~nGnGy 254 (442)
T PF15416_consen 183 TFSYNMGALVNGHSYLASLSGGKASPLKIYYWETP---TSAPEVIADINVGD---IPGA--GNRHGDNFSLNLDENGNGY 254 (442)
T ss_pred ccccchhhhcCCeEEEEeccCCCCCceEEEEecCC---CCCceEEEeeeecc---Cccc--ccccCcceeEEeccCCceE
Confidence 4677777777899999875442 57777665 45667776543211 1111 01222334688888776
Q ss_pred EEEEeCCCCeEEEEcCCC
Q 010579 156 IYIADTMNMAIRKISDTG 173 (507)
Q Consensus 156 IYVADs~N~rIrk~d~~G 173 (507)
||+.|.....|.+++-.+
T Consensus 255 iFFgdnaat~ilR~~vsn 272 (442)
T PF15416_consen 255 IFFGDNAATNILRFTVSN 272 (442)
T ss_pred EEecCCccceEEEEEccC
Confidence 999998888888888444
No 198
>PRK02939 lipoprotein; Reviewed
Probab=25.44 E-value=7.2e+02 Score=25.20 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=27.8
Q ss_pred ChhhHHHHHHHHHHHHhhcccCCCCCCCceeecceEeEEEecCCcEEEEEeCCCCeEEecCcceEeeCCe
Q 010579 1 MVRNLVVFLLILVFFFGGFSSVSASTPPAKIVAGIVSNVVSALVKWLWSLKDSPKTAVSSSSMIKFEGGY 70 (507)
Q Consensus 1 M~r~~l~llllLlLll~~~ssaaa~~~pa~ivsG~l~~va~ag~~~I~~~d~~t~~i~aG~~~~~~~~G~ 70 (507)
|+|.+++.+++|+|.-|--..+...-.|. .+....++-+|+-.+.+..-+....-+.|.
T Consensus 1 ~k~~~~~~~~~~~l~gcd~~~~~~~f~P~-----------manfSn~FdFdPlrG~VK~~tqt~~ne~g~ 59 (236)
T PRK02939 1 MKKKLLLTLLAILLTGCDRTEALESFTPE-----------MASFSNEFDFDPLRGPVKDFTQTLMDEQGE 59 (236)
T ss_pred CceeehHHHHHHHHhccCCcccccccCHH-----------HhhhhhhcCCCcccCcceeeEEEEEcCCCc
Confidence 67765554444443333322333333332 233455666777666555333334444443
No 199
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=25.00 E-value=7.8e+02 Score=29.18 Aligned_cols=125 Identities=14% Similarity=0.221 Sum_probs=74.7
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCC---CcceEEEcCCCCEEEEeC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMN---HPKGLAVDDRGNIYIADT 161 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn---~P~GIaVd~dGnIYVADs 161 (507)
=+.|++.|||.=+|+-+..+.|.-++..... -+-|...... ..-....|. .-..+.++|||.+..+--
T Consensus 457 IWsi~~~pD~~g~vT~saDktVkfWdf~l~~-----~~~gt~~k~l----sl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 457 IWSISLSPDNKGFVTGSADKTVKFWDFKLVV-----SVPGTQKKVL----SLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred eeeeeecCCCCceEEecCCcEEEEEeEEEEe-----ccCcccceee----eeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 4567777777777777777777777653100 0001100000 000011222 234688999999888888
Q ss_pred CCCeEEEEcCCCcEEEecCcccCCCCCCCCCccCccCCCCc-eEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579 162 MNMAIRKISDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDF-DVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 234 (507)
Q Consensus 162 ~N~rIrk~d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~-gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~ 234 (507)
.|+.|.+|--+....+.. .+ |+ .-|. ++- +..++.|.|+-+....|....++.++|-
T Consensus 528 LdnTVkVyflDtlKFfls-LY----GH----------kLPV~smD-IS~DSklivTgSADKnVKiWGLdFGDCH 585 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLS-LY----GH----------KLPVLSMD-ISPDSKLIVTGSADKNVKIWGLDFGDCH 585 (888)
T ss_pred ccCeEEEEEecceeeeee-ec----cc----------ccceeEEe-ccCCcCeEEeccCCCceEEeccccchhh
Confidence 899888888776433321 01 11 0232 232 5678899999988888999999999984
No 200
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=24.83 E-value=7.3e+02 Score=28.11 Aligned_cols=69 Identities=7% Similarity=0.132 Sum_probs=49.7
Q ss_pred cceEEEcCCCC-EEEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCC
Q 010579 145 PKGLAVDDRGN-IYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGN 220 (507)
Q Consensus 145 P~GIaVd~dGn-IYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn 220 (507)
..||++.+... |+|+=....+|..+|... +.+++- ..|..-+...++|..+++-..+
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-------------------~~Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-------------------SHPLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceeee-------------------cCCcceeeecCCceEEEeecCC
Confidence 35999999654 778777788999999654 344432 1333323357889999999999
Q ss_pred CeEEEEECCCCc
Q 010579 221 QAIREIQLHDDD 232 (507)
Q Consensus 221 ~rIr~I~l~~~~ 232 (507)
++|..+|+.+..
T Consensus 272 G~~i~YD~R~~k 283 (673)
T KOG4378|consen 272 GELIAYDMRSTK 283 (673)
T ss_pred ceEEEEecccCC
Confidence 999999987644
No 201
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=24.66 E-value=78 Score=34.02 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=47.2
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
-.+++|++.|++..|++-...++++.+|.- .+..-.+. ..+ ..+.-.+|.++|.|.=||+-+.
T Consensus 230 mRTN~IswnPeafnF~~a~ED~nlY~~DmR-----~l~~p~~v---~~d---------hvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 230 MRTNTICWNPEAFNFVAANEDHNLYTYDMR-----NLSRPLNV---HKD---------HVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred ccccceecCccccceeeccccccceehhhh-----hhcccchh---hcc---------cceeEEEeccCCCcchhccccc
Confidence 356677777766677777777777777653 11111111 111 1233457888899999999999
Q ss_pred CCeEEEEcCCC
Q 010579 163 NMAIRKISDTG 173 (507)
Q Consensus 163 N~rIrk~d~~G 173 (507)
...||.|..+.
T Consensus 293 DksIRIf~~~~ 303 (433)
T KOG0268|consen 293 DKSIRIFPVNH 303 (433)
T ss_pred cceEEEeecCC
Confidence 99999988543
No 202
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=24.08 E-value=1.1e+03 Score=28.08 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=54.3
Q ss_pred cCCCc-ceEEEcCCCCEEEEeCCCCeEEEEcCCC---cEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEE
Q 010579 141 RMNHP-KGLAVDDRGNIYIADTMNMAIRKISDTG---VTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVI 216 (507)
Q Consensus 141 ~fn~P-~GIaVd~dGnIYVADs~N~rIrk~d~~G---VstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVa 216 (507)
+|+.| .+|.+.+|+++|-.=...+.|..+.... ..+|.|-.... .+- ....-.-+.++. +|+.-+..|.
T Consensus 290 RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~----~~~--k~~~~~l~t~~~-idpr~~~~vl 362 (792)
T KOG1963|consen 290 RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT----PST--KTRPQSLTTGVS-IDPRTNSLVL 362 (792)
T ss_pred ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCC----ccc--cccccccceeEE-EcCCCCceee
Confidence 34555 5999999999888877788888887422 45665533210 000 111123456776 4666667777
Q ss_pred eCCCCeEEEEECCCCc
Q 010579 217 DRGNQAIREIQLHDDD 232 (507)
Q Consensus 217 D~gn~rIr~I~l~~~~ 232 (507)
..-+++|+.+++-++.
T Consensus 363 n~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDS 378 (792)
T ss_pred cCCCceEEEEeccccc
Confidence 8888888888877654
No 203
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=23.18 E-value=3e+02 Score=27.11 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=19.0
Q ss_pred EcCCCeEEEEeCCCCeEEEEECC
Q 010579 207 VGSSCSLLVIDRGNQAIREIQLH 229 (507)
Q Consensus 207 vd~~G~LyVaD~gn~rIr~I~l~ 229 (507)
++..|+||+.+...+.+..+...
T Consensus 136 vS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 136 VSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred EccCCeEEEEEccCCceeEeeec
Confidence 47889999999988888888754
No 204
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.17 E-value=8.6e+02 Score=28.32 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=51.9
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
.=+.+|..+.|.++|+-..+.-|+.+++... .++.-+.|.- .+-+.|.+++||+=.++-+..
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~--~kimkLrGHT----------------dNVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--KKIMKLRGHT----------------DNVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEeccccc--cceeeeeccc----------------cceEEEEEcCCCCeEeecCCC
Confidence 4578888889999999888899999998632 2233333321 245578889999888877778
Q ss_pred CeEEEEcCCC
Q 010579 164 MAIRKISDTG 173 (507)
Q Consensus 164 ~rIrk~d~~G 173 (507)
..|+..|-+-
T Consensus 235 gtIrlWdLgq 244 (735)
T KOG0308|consen 235 GTIRLWDLGQ 244 (735)
T ss_pred ceEEeeeccc
Confidence 8888888544
No 205
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=23.05 E-value=7.8e+02 Score=26.77 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=46.1
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
.=..|+|||.++.|++-+....|..+|.. +|.+.+..- | ....-.|++|++.--..++-...
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDla---tg~Lkltlt------G---------hi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLA---TGQLKLTLT------G---------HIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcc---cCeEEEeec------c---------hhheeeeeeecccCceEEEecCC
Confidence 55689999987788888877888888887 355544321 1 13345688888765455555556
Q ss_pred CeEEEEc
Q 010579 164 MAIRKIS 170 (507)
Q Consensus 164 ~rIrk~d 170 (507)
..|.-.|
T Consensus 215 k~VKCwD 221 (460)
T KOG0285|consen 215 KQVKCWD 221 (460)
T ss_pred CeeEEEe
Confidence 6677777
No 206
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=22.97 E-value=8e+02 Score=24.84 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=21.1
Q ss_pred eeEEEEcC-CCcEEEEeCCCCeEEEEeCC
Q 010579 85 PFSVAVSP-SGELLVLDSENSNIYKISTS 112 (507)
Q Consensus 85 P~gIaVd~-dG~LYVaDs~n~rI~ki~~~ 112 (507)
=.||.+-| +|.||-. ...++|+.|++.
T Consensus 29 l~GID~Rpa~G~LYgl-~~~g~lYtIn~~ 56 (236)
T PF14339_consen 29 LVGIDFRPANGQLYGL-GSTGRLYTINPA 56 (236)
T ss_pred EEEEEeecCCCCEEEE-eCCCcEEEEECC
Confidence 34777777 8899977 445899999987
No 207
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=22.57 E-value=1.4e+02 Score=23.33 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=21.5
Q ss_pred eeEEEEcCCCcEEEEeCCC-------CeEEEEeCCCC
Q 010579 85 PFSVAVSPSGELLVLDSEN-------SNIYKISTSLS 114 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n-------~rI~ki~~~g~ 114 (507)
-+++++.+||.|+++-... ..|.|++++|+
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 3588999999998886431 34778887743
No 208
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=22.24 E-value=1.2e+03 Score=26.50 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=73.3
Q ss_pred cEEEEEeCCCCeEEecCcceEeeCCeeeEEeecCCCCCCCeeEEEEcCCCcEEEEeCCC-----CeEEEEeCCCCCCCcc
Q 010579 45 KWLWSLKDSPKTAVSSSSMIKFEGGYTVETVFEGSKFGMEPFSVAVSPSGELLVLDSEN-----SNIYKISTSLSPYSRP 119 (507)
Q Consensus 45 ~~I~~~d~~t~~i~aG~~~~~~~~G~~~~~~~~G~~~~~~P~gIaVd~dG~LYVaDs~n-----~rI~ki~~~g~~~g~i 119 (507)
+.+|++|+.++++....+|...-.+. ++++- +|.||+.-..+ ..|-++++.. ...
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~~----------------~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~---~~W 408 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSDF----------------GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVT---NKW 408 (571)
T ss_pred ceEEEecCCCCceeccCCccCccccc----------------eeEEE-CCEEEEEeccccccccccEEEecCCC---Ccc
Confidence 67888888887766332222221111 22322 56788775443 3577777762 333
Q ss_pred EEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeC---CC---CeEEEEcCCC-c-EEEecCcccCCCCCCCC
Q 010579 120 KLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADT---MN---MAIRKISDTG-V-TTIAGGKWSRGVGHVDG 191 (507)
Q Consensus 120 ~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs---~N---~rIrk~d~~G-V-stIaGG~~g~~~G~~dg 191 (507)
..++.-... ..=.|+++- +|.||++=. .+ ..+..+|+.. . +.++--..
T Consensus 409 ~~va~m~~~--------------r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--------- 464 (571)
T KOG4441|consen 409 TPVAPMLTR--------------RSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT--------- 464 (571)
T ss_pred cccCCCCcc--------------eeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc---------
Confidence 333321111 111245554 689999844 23 4677888655 2 22221111
Q ss_pred CccCccCCCCceEEEEcCCCeEEEEeCCC-----CeEEEEECCCCceeeC
Q 010579 192 PSEDAKFSNDFDVVYVGSSCSLLVIDRGN-----QAIREIQLHDDDCSDN 236 (507)
Q Consensus 192 ~~~~a~f~~P~gIa~vd~~G~LyVaD~gn-----~rIr~I~l~~~~~~~~ 236 (507)
++ .=.++++ -++.|||+--.. ..|-++++.++..+..
T Consensus 465 ----~R--~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 465 ----RR--SGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred ----cc--ccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 11 1124443 577999985433 2477889888776664
No 209
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.83 E-value=1.1e+03 Score=26.15 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=22.6
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSL 113 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g 113 (507)
-..+||++||..+++--..+.|..++..+
T Consensus 205 il~~avS~Dgkylatgg~d~~v~Iw~~~t 233 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGGRDRHVQIWDCDT 233 (479)
T ss_pred eEEEEEcCCCcEEEecCCCceEEEecCcc
Confidence 34789999998888777777888888763
No 210
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=21.81 E-value=78 Score=29.12 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=8.7
Q ss_pred ChhhHHHHHHHHHHHH
Q 010579 1 MVRNLVVFLLILVFFF 16 (507)
Q Consensus 1 M~r~~l~llllLlLll 16 (507)
|+|+++++++++++++
T Consensus 1 M~~~~~~~~~~~~~~~ 16 (162)
T PF12276_consen 1 MKRRLLLALALALLAL 16 (162)
T ss_pred CchHHHHHHHHHHHHh
Confidence 6777655554444433
No 211
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.48 E-value=1.2e+03 Score=26.61 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=52.9
Q ss_pred CCeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCC
Q 010579 83 MEPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTM 162 (507)
Q Consensus 83 ~~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~ 162 (507)
..+...+.+|+...+|.-+..+.|..++.. ..++..+-. . -.|+-|+..++|.+++.=+.
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~----~~~t~~~ka---------------~-~~P~~iaWHp~gai~~V~s~ 319 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTT----RGVTLLAKA---------------E-FIPTLIAWHPDGAIFVVGSE 319 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcC----CCeeeeeee---------------c-ccceEEEEcCCCcEEEEEcC
Confidence 467777888887888888888999999876 223333211 1 35999999999999998888
Q ss_pred CCeEEEEcCC
Q 010579 163 NMAIRKISDT 172 (507)
Q Consensus 163 N~rIrk~d~~ 172 (507)
.+.|+.||..
T Consensus 320 qGelQ~FD~A 329 (545)
T PF11768_consen 320 QGELQCFDMA 329 (545)
T ss_pred CceEEEEEee
Confidence 8999999943
No 212
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=21.35 E-value=3.8e+02 Score=23.42 Aligned_cols=53 Identities=23% Similarity=0.406 Sum_probs=33.3
Q ss_pred eeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 85 PFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 85 P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
.+.+.+..||+|.+.|.. +++ ++..+.. .|. -..+.-+.+.++|||.|-|..+
T Consensus 20 ~~~L~l~~dGnLvl~~~~-~~~-iWss~~t--------~~~----------------~~~~~~~~L~~~GNlvl~d~~~ 72 (114)
T PF01453_consen 20 NYTLILQSDGNLVLYDSN-GSV-IWSSNNT--------SGR----------------GNSGCYLVLQDDGNLVLYDSSG 72 (114)
T ss_dssp TEEEEEETTSEEEEEETT-TEE-EEE--S---------TTS----------------S-SSEEEEEETTSEEEEEETTS
T ss_pred cccceECCCCeEEEEcCC-CCE-EEEeccc--------CCc----------------cccCeEEEEeCCCCEEEEeecc
Confidence 356788889999999876 344 4443100 000 0134568888999999999633
No 213
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=21.18 E-value=1.4e+03 Score=27.51 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=59.6
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMN 163 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N 163 (507)
.=.||++|.-+.+.|+-...+-+..++.+. .+ +.+.- ..| ..+.+|.....-.++++-...
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~----k~--l~~~l--~l~-----------~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKK----KV--LKKSL--RLG-----------SSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCC----cc--eeeee--ccC-----------CCcceeeeeehhhhhhhhcCc
Confidence 346899999888989877766666667652 11 11110 000 123334333332333333334
Q ss_pred CeEEEEcCCC--c-EEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 010579 164 MAIRKISDTG--V-TTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCS 234 (507)
Q Consensus 164 ~rIrk~d~~G--V-stIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~ 234 (507)
-.|+++|... | ..+.| .. +.-+++++ .++|+=+|+-.....||.+|+.+..|.
T Consensus 556 f~I~vvD~~t~kvvR~f~g-h~----------------nritd~~F-S~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWG-HG----------------NRITDMTF-SPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred eeEEEEEchhhhhhHHhhc-cc----------------cceeeeEe-CCCCcEEEEeecCCcEEEEeccCccee
Confidence 4466666433 2 22211 10 12345664 567776666666688898888776543
No 214
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=21.12 E-value=1e+03 Score=25.31 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=40.1
Q ss_pred eeEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCC-cceEEEcCCCC-EEEEeC
Q 010579 85 PFSVAVSP-SGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNH-PKGLAVDDRGN-IYIADT 161 (507)
Q Consensus 85 P~gIaVd~-dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~-P~GIaVd~dGn-IYVADs 161 (507)
=..|+|+| ..+++++-+..+.||.+...-+ |. +++.. ...+.. +..++...||. +|.++.
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~--g~---~~~ka------------~~~~~~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNS--GQ---LVPKA------------QQSHDGPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecC--Cc---ccchh------------hhccCCCeEEEEEccCCceEEeecc
Confidence 34788888 6788889998888888875410 11 11110 011223 35788888887 565554
Q ss_pred CCCeEEEEc
Q 010579 162 MNMAIRKIS 170 (507)
Q Consensus 162 ~N~rIrk~d 170 (507)
...++.+|
T Consensus 93 -Dk~~k~wD 100 (347)
T KOG0647|consen 93 -DKQAKLWD 100 (347)
T ss_pred -CCceEEEE
Confidence 33445554
No 215
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=21.06 E-value=2.6e+02 Score=28.05 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred CeeEEEEcCCCcEEEEeCCCCeEEEEeCCCCC----CCccEEEecCC-CCccc-cCCCCcccccCCCc---ceEEEcCCC
Q 010579 84 EPFSVAVSPSGELLVLDSENSNIYKISTSLSP----YSRPKLVAGSP-EGYYG-HVDGRPRGARMNHP---KGLAVDDRG 154 (507)
Q Consensus 84 ~P~gIaVd~dG~LYVaDs~n~rI~ki~~~g~~----~g~i~~vaG~~-~G~~G-~~dG~~~~a~fn~P---~GIaVd~dG 154 (507)
+|.++|++.+|.+-|.+... ..++-+|.+ .|.+.+..|.. .+..| . +.-| ..+.|++||
T Consensus 77 ~~lDlAI~G~GFF~V~~~~G---~~yTR~G~F~~d~~G~Lvt~~G~~vlg~~g~p---------I~lp~~~~~~~I~~dG 144 (238)
T PRK12690 77 GQFDFAIEGEGFFMVETPQG---ERLTRAGSFTPNAEGELVDPDGNRLLDAGGAP---------IFIPPDARSVAVGADG 144 (238)
T ss_pred CceeEEECCCcEEEEEcCCC---CEEeeCCCeEECCCCCEEcCCCCEeECCCCCc---------cccCCCCceEEECCCC
Q ss_pred CEEEEeCCCCeEEEEc
Q 010579 155 NIYIADTMNMAIRKIS 170 (507)
Q Consensus 155 nIYVADs~N~rIrk~d 170 (507)
.|++.+..-.+|..++
T Consensus 145 ~i~~~g~~vg~l~lv~ 160 (238)
T PRK12690 145 TLSADGQPLGQIGLYQ 160 (238)
T ss_pred eEEECCeeeeeEEEEe
No 216
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.58 E-value=9.5e+02 Score=24.79 Aligned_cols=127 Identities=9% Similarity=0.095 Sum_probs=71.6
Q ss_pred EEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCccEEEecCCCCccccCCCCcccccCCCcceEEEcCCCCEEEEeCCCCeE
Q 010579 87 SVAVSPSGELLVLDSENSNIYKISTSLSPYSRPKLVAGSPEGYYGHVDGRPRGARMNHPKGLAVDDRGNIYIADTMNMAI 166 (507)
Q Consensus 87 gIaVd~dG~LYVaDs~n~rI~ki~~~g~~~g~i~~vaG~~~G~~G~~dG~~~~a~fn~P~GIaVd~dGnIYVADs~N~rI 166 (507)
+++...|+.=+.+-.+...|+.++-+ +|++..-. .|+ ...-+.|.+..+-.+.++-+....|
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~---TGkv~Rr~------rgH---------~aqVNtV~fNeesSVv~SgsfD~s~ 125 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVN---TGKVDRRF------RGH---------LAQVNTVRFNEESSVVASGSFDSSV 125 (307)
T ss_pred eccccccccccccCCCCceEEEEEcc---cCeeeeec------ccc---------cceeeEEEecCcceEEEecccccee
Confidence 34444554455555555677777766 24332211 111 2234467777777788887778888
Q ss_pred EEEc--CCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEEEEECCCCceeeCCCCCccce
Q 010579 167 RKIS--DTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHDDDCSDNYDDTFHLG 244 (507)
Q Consensus 167 rk~d--~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr~I~l~~~~~~~~~~~G~p~g 244 (507)
|.+| +..+.-|.-- ....| +|.-++-.+..+|+-+-.+++|.+++..+.....+...-.+.
T Consensus 126 r~wDCRS~s~ePiQil-----dea~D------------~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~ 188 (307)
T KOG0316|consen 126 RLWDCRSRSFEPIQIL-----DEAKD------------GVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITS 188 (307)
T ss_pred EEEEcccCCCCccchh-----hhhcC------------ceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCccee
Confidence 8888 2322222110 00111 233356677889999999999999988776554333222234
Q ss_pred EEEE
Q 010579 245 IFVL 248 (507)
Q Consensus 245 Ia~~ 248 (507)
+.+.
T Consensus 189 vs~s 192 (307)
T KOG0316|consen 189 VSFS 192 (307)
T ss_pred EEec
Confidence 4443
No 217
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=20.50 E-value=4.8e+02 Score=22.80 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=32.3
Q ss_pred ceEEEcCCCCEEEEeCCCCeEEEE-cCCCcEEEecCcccCCCCCCCCCccCccCCCCceEEEEcCCCeEEEEeCCCCeEE
Q 010579 146 KGLAVDDRGNIYIADTMNMAIRKI-SDTGVTTIAGGKWSRGVGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNQAIR 224 (507)
Q Consensus 146 ~GIaVd~dGnIYVADs~N~rIrk~-d~~GVstIaGG~~g~~~G~~dg~~~~a~f~~P~gIa~vd~~G~LyVaD~gn~rIr 224 (507)
.-+.+..||+|.+.|..+..|..- .+.+ . -..+ ..+.+.++|+|.+.|..+..|+
T Consensus 21 ~~L~l~~dGnLvl~~~~~~~iWss~~t~~----------~-------------~~~~-~~~~L~~~GNlvl~d~~~~~lW 76 (114)
T PF01453_consen 21 YTLILQSDGNLVLYDSNGSVIWSSNNTSG----------R-------------GNSG-CYLVLQDDGNLVLYDSSGNVLW 76 (114)
T ss_dssp EEEEEETTSEEEEEETTTEEEEE--S-TT----------S-------------S-SS-EEEEEETTSEEEEEETTSEEEE
T ss_pred ccceECCCCeEEEEcCCCCEEEEecccCC----------c-------------cccC-eEEEEeCCCCEEEEeecceEEE
Confidence 457888899999998764333222 1111 0 0011 2234678999999997555555
Q ss_pred E
Q 010579 225 E 225 (507)
Q Consensus 225 ~ 225 (507)
.
T Consensus 77 ~ 77 (114)
T PF01453_consen 77 Q 77 (114)
T ss_dssp E
T ss_pred e
Confidence 4
No 218
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=20.41 E-value=87 Score=27.03 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=11.0
Q ss_pred cccccCCCCCCCCCCCC
Q 010579 367 ESYVIPDEDEPPPLETR 383 (507)
Q Consensus 367 ~~~~~~~~~~~~~~~~~ 383 (507)
-...|||++.+|+...+
T Consensus 21 A~V~mpeee~E~~~~~~ 37 (95)
T PF05586_consen 21 AVVKMPEEEFEPPMIRP 37 (95)
T ss_pred ceEeCCcccccCccCCC
Confidence 35789977776664433
Done!