Query 010581
Match_columns 507
No_of_seqs 301 out of 1660
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 09:53:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jtn_A LIM domain-binding prot 99.9 1.6E-23 5.4E-28 197.3 11.6 125 140-276 57-181 (182)
2 2xqn_T Testin, TESS; metal-bin 99.9 1.9E-23 6.6E-28 184.9 9.8 121 142-275 2-124 (126)
3 2rgt_A Fusion of LIM/homeobox 99.9 3E-23 1E-27 193.1 8.7 125 142-278 5-129 (169)
4 2xjy_A Rhombotin-2; oncoprotei 99.9 4.5E-23 1.5E-27 183.5 9.0 122 143-276 2-127 (131)
5 1rut_X Flinc4, fusion protein 99.9 2E-22 6.8E-27 190.8 6.8 127 141-279 3-133 (188)
6 1b8t_A Protein (CRP1); LIM dom 99.8 7.3E-21 2.5E-25 180.5 8.5 122 142-277 6-175 (192)
7 2cup_A Skeletal muscle LIM-pro 99.8 5.3E-20 1.8E-24 156.6 8.7 98 141-249 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.7 2.1E-18 7.1E-23 152.5 4.6 109 141-277 3-115 (122)
9 2ehe_A Four and A half LIM dom 99.7 4.1E-17 1.4E-21 133.9 6.5 79 130-208 2-81 (82)
10 1x3h_A Leupaxin; paxillin fami 99.7 8.4E-17 2.9E-21 131.2 7.7 78 130-208 2-79 (80)
11 2cuq_A Four and A half LIM dom 99.7 9.6E-17 3.3E-21 130.9 7.7 78 130-208 2-79 (80)
12 2dlo_A Thyroid receptor-intera 99.6 2.1E-16 7.1E-21 129.5 7.6 77 130-208 3-80 (81)
13 1j2o_A FLIN2, fusion of rhombo 99.6 2.2E-16 7.4E-21 137.9 7.8 103 143-277 3-107 (114)
14 1x63_A Skeletal muscle LIM-pro 99.6 4.7E-16 1.6E-20 127.3 8.0 77 131-207 3-80 (82)
15 1b8t_A Protein (CRP1); LIM dom 99.6 1.4E-17 4.8E-22 157.9 -2.7 112 104-215 25-187 (192)
16 1iml_A CRIP, cysteine rich int 99.6 1.5E-15 5.1E-20 122.9 6.3 71 144-214 1-72 (76)
17 1x6a_A LIMK-2, LIM domain kina 99.6 1.9E-15 6.4E-20 123.6 6.3 76 131-207 3-80 (81)
18 1a7i_A QCRP2 (LIM1); LIM domai 99.6 1.2E-15 4.2E-20 124.9 4.8 73 141-213 5-77 (81)
19 2egq_A FHL1 protein; LIM domai 99.6 3.7E-15 1.3E-19 120.6 7.1 72 130-201 2-77 (77)
20 2cu8_A Cysteine-rich protein 2 99.5 8.5E-15 2.9E-19 118.4 7.2 70 139-208 5-75 (76)
21 2dj7_A Actin-binding LIM prote 99.5 8.6E-15 2.9E-19 120.3 7.3 68 140-208 12-79 (80)
22 1x68_A FHL5 protein; four-and- 99.5 5.3E-15 1.8E-19 119.8 5.7 70 141-210 3-75 (76)
23 2dar_A PDZ and LIM domain prot 99.5 8.3E-15 2.9E-19 122.4 7.0 70 138-208 20-89 (90)
24 2cur_A Skeletal muscle LIM-pro 99.5 9.7E-15 3.3E-19 115.8 6.3 67 141-208 3-69 (69)
25 2d8z_A Four and A half LIM dom 99.5 1.1E-14 3.7E-19 115.7 6.2 67 141-208 3-69 (70)
26 1x4k_A Skeletal muscle LIM-pro 99.5 1.4E-14 4.6E-19 115.6 6.7 68 141-208 3-71 (72)
27 1wyh_A SLIM 2, skeletal muscle 99.5 1.2E-14 4.1E-19 116.0 6.1 68 141-208 3-71 (72)
28 2d8y_A Eplin protein; LIM doma 99.5 2.4E-14 8.1E-19 119.9 7.8 76 138-213 10-85 (91)
29 1nyp_A Pinch protein; LIM doma 99.5 1.7E-14 5.9E-19 113.4 4.8 64 141-205 3-66 (66)
30 1x4l_A Skeletal muscle LIM-pro 99.5 3E-14 1E-18 113.9 6.2 66 141-206 3-71 (72)
31 1g47_A Pinch protein; LIM doma 99.5 3.4E-14 1.2E-18 114.7 5.9 67 141-207 9-76 (77)
32 1rut_X Flinc4, fusion protein 99.4 1.7E-15 5.9E-20 143.1 -4.0 109 103-211 22-139 (188)
33 2xjy_A Rhombotin-2; oncoprotei 99.4 1.3E-15 4.5E-20 135.1 -5.5 103 103-205 19-130 (131)
34 2d8x_A Protein pinch; LIM doma 99.4 1.2E-13 4.2E-18 109.7 6.3 66 141-207 3-68 (70)
35 1x64_A Alpha-actinin-2 associa 99.4 1.5E-13 5.1E-18 114.6 6.5 66 141-207 23-88 (89)
36 2xqn_T Testin, TESS; metal-bin 99.4 5.4E-15 1.9E-19 130.5 -2.8 100 103-202 20-125 (126)
37 1x62_A C-terminal LIM domain p 99.4 8.4E-14 2.9E-18 113.6 4.2 66 141-207 13-78 (79)
38 1v6g_A Actin binding LIM prote 99.4 1.5E-13 5.3E-18 112.3 5.7 72 131-203 3-75 (81)
39 1x61_A Thyroid receptor intera 99.4 2.4E-13 8.3E-18 108.4 6.1 68 141-209 3-71 (72)
40 2cor_A Pinch protein; LIM doma 99.4 2.1E-13 7.3E-18 111.5 5.6 66 140-207 12-77 (79)
41 1wig_A KIAA1808 protein; LIM d 99.4 2.5E-13 8.6E-18 109.4 5.6 64 141-205 3-67 (73)
42 2l3k_A Rhombotin-2, linker, LI 99.4 5.5E-13 1.9E-17 117.8 7.8 78 139-216 2-83 (123)
43 3f6q_B LIM and senescent cell 99.4 6.6E-13 2.3E-17 105.2 6.1 65 139-203 7-72 (72)
44 2rgt_A Fusion of LIM/homeobox 99.3 4.2E-14 1.4E-18 131.4 -2.0 104 104-207 24-132 (169)
45 2co8_A NEDD9 interacting prote 99.3 1E-12 3.4E-17 108.2 5.5 67 140-206 12-80 (82)
46 2jtn_A LIM domain-binding prot 99.3 7.9E-14 2.7E-18 131.0 -2.2 98 104-201 78-180 (182)
47 2l4z_A DNA endonuclease RBBP8, 99.3 1.2E-12 4.2E-17 116.1 5.4 64 140-203 58-123 (123)
48 2iyb_E Testin, TESS, TES; LIM 99.3 1.7E-12 5.9E-17 102.0 4.7 59 143-201 2-64 (65)
49 1x6a_A LIMK-2, LIM domain kina 99.3 2.2E-12 7.4E-17 105.3 4.8 76 189-277 1-76 (81)
50 2egq_A FHL1 protein; LIM domai 99.3 2.2E-12 7.4E-17 104.2 4.1 73 189-274 1-76 (77)
51 2ehe_A Four and A half LIM dom 99.2 4.7E-12 1.6E-16 103.5 4.2 76 189-277 1-76 (82)
52 2cuq_A Four and A half LIM dom 99.2 6.8E-12 2.3E-16 102.0 4.7 74 189-277 1-74 (80)
53 1x3h_A Leupaxin; paxillin fami 99.2 1.4E-11 5E-16 100.0 4.6 74 189-277 1-74 (80)
54 1x63_A Skeletal muscle LIM-pro 99.2 1.8E-11 6.2E-16 99.9 4.6 76 189-277 1-76 (82)
55 1v6g_A Actin binding LIM prote 99.2 2.6E-11 8.8E-16 99.0 5.5 76 189-278 1-76 (81)
56 2dlo_A Thyroid receptor-intera 99.1 3.8E-11 1.3E-15 98.0 4.7 73 189-277 2-75 (81)
57 2cup_A Skeletal muscle LIM-pro 98.9 5.5E-11 1.9E-15 100.6 -2.8 74 104-177 24-101 (101)
58 1wig_A KIAA1808 protein; LIM d 98.7 7.1E-09 2.4E-13 83.2 4.7 64 200-277 2-65 (73)
59 2dar_A PDZ and LIM domain prot 98.6 4.4E-08 1.5E-12 81.4 4.9 70 193-277 15-84 (90)
60 2iyb_E Testin, TESS, TES; LIM 98.6 2.9E-08 9.9E-13 77.7 3.4 61 202-275 1-64 (65)
61 1x4k_A Skeletal muscle LIM-pro 98.5 5.2E-08 1.8E-12 77.1 4.5 65 200-277 2-66 (72)
62 1x4l_A Skeletal muscle LIM-pro 98.5 5.6E-08 1.9E-12 77.2 4.7 64 201-276 3-67 (72)
63 2d8z_A Four and A half LIM dom 98.5 5.2E-08 1.8E-12 76.8 4.1 62 201-277 3-64 (70)
64 2d8x_A Protein pinch; LIM doma 98.5 7.3E-08 2.5E-12 76.1 4.9 61 202-277 4-64 (70)
65 1x68_A FHL5 protein; four-and- 98.5 5E-08 1.7E-12 78.4 4.0 65 200-277 2-68 (76)
66 2cur_A Skeletal muscle LIM-pro 98.5 6.5E-08 2.2E-12 76.2 4.5 62 201-277 3-64 (69)
67 1x61_A Thyroid receptor intera 98.5 7E-08 2.4E-12 76.5 4.8 64 201-277 3-66 (72)
68 1nyp_A Pinch protein; LIM doma 98.5 3.3E-08 1.1E-12 77.2 2.6 62 200-276 2-63 (66)
69 2l3k_A Rhombotin-2, linker, LI 98.5 5.8E-08 2E-12 85.4 4.5 67 198-276 1-69 (123)
70 3f6q_B LIM and senescent cell 98.5 6.8E-08 2.3E-12 76.0 3.5 65 198-275 6-70 (72)
71 1wyh_A SLIM 2, skeletal muscle 98.4 1.4E-07 4.9E-12 74.6 4.5 65 200-277 2-66 (72)
72 2cor_A Pinch protein; LIM doma 98.4 1.5E-07 5E-12 76.6 4.2 61 201-277 13-73 (79)
73 2l4z_A DNA endonuclease RBBP8, 98.4 1.7E-07 5.7E-12 82.9 4.0 63 200-275 58-121 (123)
74 2cu8_A Cysteine-rich protein 2 98.4 2.1E-07 7.3E-12 74.6 4.2 63 201-277 7-70 (76)
75 1g47_A Pinch protein; LIM doma 98.4 1.9E-07 6.5E-12 74.8 3.6 63 201-276 9-71 (77)
76 1x62_A C-terminal LIM domain p 98.3 2.1E-07 7.2E-12 75.4 2.4 61 202-277 14-74 (79)
77 2co8_A NEDD9 interacting prote 98.3 4.9E-07 1.7E-11 74.0 4.3 63 202-277 14-77 (82)
78 2dj7_A Actin-binding LIM prote 98.3 6.6E-07 2.3E-11 73.0 4.8 61 202-277 14-74 (80)
79 1a7i_A QCRP2 (LIM1); LIM domai 98.3 4.2E-07 1.4E-11 73.8 3.5 62 202-277 6-67 (81)
80 1x64_A Alpha-actinin-2 associa 98.3 5.6E-07 1.9E-11 74.5 4.2 61 202-277 24-84 (89)
81 2d8y_A Eplin protein; LIM doma 98.2 5.7E-07 2E-11 74.8 3.4 63 202-278 14-76 (91)
82 1iml_A CRIP, cysteine rich int 98.2 7.9E-07 2.7E-11 71.3 3.4 60 204-277 1-61 (76)
83 1m3v_A FLIN4, fusion of the LI 98.2 5.2E-07 1.8E-11 79.2 2.0 66 201-278 3-68 (122)
84 1j2o_A FLIN2, fusion of rhombo 98.1 1.2E-06 4E-11 76.0 4.0 64 203-279 3-67 (114)
85 1zfo_A LAsp-1; LIM domain, zin 96.8 0.00026 9E-09 47.7 0.6 29 143-171 3-31 (31)
86 1z5h_A Tricorn protease intera 75.1 4.7 0.00016 45.3 7.4 41 386-426 259-301 (780)
87 3ebh_A PFA-M1, M1 family amino 70.2 7.2 0.00025 44.7 7.4 42 386-427 295-338 (889)
88 4fke_A Aminopeptidase N; zinc 69.2 10 0.00034 43.4 8.4 36 386-426 316-358 (909)
89 4ap4_A E3 ubiquitin ligase RNF 68.7 4 0.00014 34.4 3.9 96 171-281 8-115 (133)
90 2xq0_A LTA-4 hydrolase, leukot 67.4 2.7 9.1E-05 46.2 3.0 40 387-426 296-337 (632)
91 1zfo_A LAsp-1; LIM domain, zin 64.8 2.8 9.7E-05 27.7 1.6 27 172-198 5-31 (31)
92 3u9w_A Leukotriene A-4 hydrola 63.8 3 0.0001 45.5 2.5 39 388-426 289-329 (608)
93 3cia_A Cold-active aminopeptid 61.6 3 0.0001 45.4 2.0 40 387-426 295-336 (605)
94 2hf1_A Tetraacyldisaccharide-1 61.5 1.5 5.1E-05 34.7 -0.3 41 243-311 9-49 (68)
95 2jny_A Uncharacterized BCR; st 60.0 0.9 3.1E-05 35.9 -1.8 40 243-310 11-50 (67)
96 2jr6_A UPF0434 protein NMA0874 59.0 1.8 6.1E-05 34.2 -0.3 40 243-310 9-48 (68)
97 3cqb_A Probable protease HTPX 58.5 5.1 0.00018 33.7 2.5 19 381-399 78-96 (107)
98 3b34_A Aminopeptidase N; prote 58.5 8.5 0.00029 44.1 5.1 42 386-427 312-355 (891)
99 2xdt_A Endoplasmic reticulum a 58.0 5.1 0.00017 45.8 3.2 42 385-426 301-344 (897)
100 4fgm_A Aminopeptidase N family 57.3 3.9 0.00013 44.7 2.0 42 385-426 266-320 (597)
101 2djb_A Polycomb group ring fin 56.7 8.6 0.0003 29.3 3.4 46 171-216 16-63 (72)
102 2ysl_A Tripartite motif-contai 55.9 12 0.0004 28.3 4.0 45 171-216 21-70 (73)
103 1t1h_A Gspef-atpub14, armadill 55.9 11 0.00038 29.0 3.9 47 169-216 7-56 (78)
104 2d3g_P Ubiquitin interacting m 55.8 3.4 0.00012 26.5 0.7 22 84-105 2-23 (26)
105 3se6_A Endoplasmic reticulum a 55.6 5.2 0.00018 46.3 2.7 42 385-426 363-406 (967)
106 2ecy_A TNF receptor-associated 54.4 8.4 0.00029 28.8 2.9 45 171-216 16-63 (66)
107 1jm7_B BARD1, BRCA1-associated 53.1 10 0.00035 31.9 3.6 44 171-215 23-67 (117)
108 2w15_A Zinc metalloproteinase 50.5 10 0.00036 35.0 3.5 25 374-398 124-148 (202)
109 1atl_A Atrolysin C; metalloend 48.8 11 0.00039 34.8 3.5 25 374-398 124-148 (202)
110 4etm_A LMPTP, low molecular we 48.1 9.8 0.00033 34.9 2.8 32 472-504 141-172 (173)
111 2ecv_A Tripartite motif-contai 47.6 13 0.00046 28.6 3.2 45 171-216 20-72 (85)
112 1qua_A Acutolysin-C, hemorrhag 47.6 12 0.00042 34.4 3.5 25 374-398 123-147 (197)
113 3vk6_A E3 ubiquitin-protein li 47.5 11 0.00038 31.9 2.8 44 172-215 3-49 (101)
114 1q0v_A Hydrophilic protein; ha 47.3 10 0.00035 31.0 2.4 43 83-125 9-66 (81)
115 2ecw_A Tripartite motif-contai 46.8 14 0.00048 28.4 3.2 45 171-216 20-72 (85)
116 1kuf_A Atrolysin E, metallopro 46.3 13 0.00045 34.4 3.5 25 374-398 126-150 (203)
117 2ecm_A Ring finger and CHY zin 46.2 18 0.0006 25.6 3.4 27 189-215 27-55 (55)
118 1bud_A Protein (acutolysin A); 46.1 13 0.00046 34.1 3.5 25 374-398 121-145 (197)
119 4dd8_A Disintegrin and metallo 46.0 13 0.00045 34.6 3.4 25 374-398 121-145 (208)
120 4ayc_A E3 ubiquitin-protein li 45.3 16 0.00056 31.6 3.7 27 189-215 71-99 (138)
121 1weo_A Cellulose synthase, cat 45.2 28 0.00096 28.9 4.8 54 139-213 12-68 (93)
122 1yp1_A FII; FII hydrolase; 1.9 45.1 14 0.00049 34.2 3.5 25 374-398 123-147 (202)
123 2js4_A UPF0434 protein BB2007; 44.9 9.2 0.00032 30.2 1.8 40 243-310 9-48 (70)
124 3rof_A Low molecular weight pr 44.5 10 0.00035 34.3 2.3 32 472-504 124-155 (158)
125 2gtq_A Aminopeptidase N; alani 44.5 5.5 0.00019 45.5 0.6 41 386-426 287-329 (867)
126 2csy_A Zinc finger protein 183 44.4 16 0.00054 28.4 3.1 43 171-214 16-60 (81)
127 3c37_A Peptidase, M48 family; 44.3 7.1 0.00024 37.7 1.3 28 374-401 83-115 (253)
128 3dte_A IRRE protein; radiotole 43.9 12 0.00042 37.4 3.0 94 374-506 84-189 (301)
129 3dwb_A ECE-1, endothelin-conve 43.9 6.5 0.00022 43.4 1.1 15 385-399 500-514 (670)
130 2d8t_A Dactylidin, ring finger 43.7 19 0.00065 27.2 3.4 44 171-215 16-61 (71)
131 1bor_A Transcription factor PM 43.6 18 0.00062 26.3 3.2 27 189-216 24-50 (56)
132 1chc_A Equine herpes virus-1 r 43.0 19 0.00064 26.8 3.3 44 172-215 7-52 (68)
133 2y43_A E3 ubiquitin-protein li 42.8 12 0.00041 30.3 2.3 44 171-215 23-69 (99)
134 3l11_A E3 ubiquitin-protein li 42.8 14 0.00049 30.7 2.8 29 171-200 16-44 (115)
135 1jm7_A BRCA1, breast cancer ty 41.8 16 0.00054 30.0 2.9 43 172-215 23-70 (112)
136 2kre_A Ubiquitin conjugation f 41.3 24 0.00081 29.2 3.9 47 168-215 27-75 (100)
137 2jsd_A Matrix metalloproteinas 41.2 9.9 0.00034 33.8 1.6 15 386-401 108-122 (160)
138 2pk7_A Uncharacterized protein 41.0 9.9 0.00034 30.0 1.4 40 243-310 9-48 (69)
139 3zuk_A Endopeptidase, peptidas 39.4 8.4 0.00029 42.9 1.1 15 385-399 522-536 (699)
140 1r1h_A Neprilysin; enkephalina 38.9 8.2 0.00028 42.7 0.8 15 385-399 523-537 (696)
141 1wgm_A Ubiquitin conjugation f 38.7 26 0.00089 28.9 3.7 47 168-215 20-69 (98)
142 2gvi_A Conserved hypothetical 38.4 9.5 0.00032 35.9 1.1 29 172-200 174-202 (204)
143 2ecn_A Ring finger protein 141 38.4 14 0.00048 27.8 1.9 44 171-216 16-61 (70)
144 2egp_A Tripartite motif-contai 38.4 14 0.00049 28.2 2.0 44 171-215 13-65 (79)
145 3nxq_A Angiotensin-converting 38.3 25 0.00084 38.8 4.5 33 388-421 357-397 (629)
146 2yur_A Retinoblastoma-binding 38.3 23 0.0008 27.0 3.2 44 171-215 16-64 (74)
147 2ckl_A Polycomb group ring fin 38.1 18 0.00062 29.8 2.7 44 171-215 16-62 (108)
148 2dw0_A Catrocollastatin; apopt 37.4 20 0.00068 37.3 3.5 25 374-398 125-149 (419)
149 2c2l_A CHIP, carboxy terminus 37.2 22 0.00076 33.6 3.6 47 168-215 206-255 (281)
150 4ap4_A E3 ubiquitin ligase RNF 37.2 33 0.0011 28.6 4.2 70 144-216 49-126 (133)
151 2ckl_B Ubiquitin ligase protei 37.2 16 0.00054 32.6 2.3 43 171-214 55-101 (165)
152 2ysm_A Myeloid/lymphoid or mix 37.1 42 0.0014 28.0 4.9 96 143-274 7-104 (111)
153 2kr4_A Ubiquitin conjugation f 36.7 27 0.00093 27.8 3.5 47 168-215 12-60 (85)
154 2ct2_A Tripartite motif protei 36.7 22 0.00076 27.6 2.9 46 171-216 16-69 (88)
155 2ddf_A ADAM 17; hydrolase; HET 36.5 15 0.00051 35.2 2.2 20 379-398 173-194 (257)
156 2ero_A VAP-1, vascular apoptos 35.9 20 0.00068 37.4 3.2 25 374-398 134-158 (427)
157 3nw0_A Non-structural maintena 35.6 11 0.00037 36.4 1.0 47 143-216 180-230 (238)
158 3fl2_A E3 ubiquitin-protein li 35.3 21 0.00073 30.1 2.8 27 189-215 70-99 (124)
159 3b4r_A Putative zinc metallopr 35.2 17 0.00059 34.6 2.4 21 384-404 46-67 (224)
160 4ic3_A E3 ubiquitin-protein li 35.1 36 0.0012 26.2 3.8 41 172-215 26-67 (74)
161 2ovx_A Matrix metalloproteinas 33.9 15 0.00052 32.8 1.6 11 387-397 112-122 (159)
162 2ea6_A Ring finger protein 4; 33.9 15 0.0005 27.2 1.3 28 187-214 38-67 (69)
163 3edh_A Bone morphogenetic prot 33.4 15 0.00052 34.4 1.6 14 386-399 87-100 (201)
164 2e3x_A Coagulation factor X-ac 33.2 26 0.0009 36.5 3.6 25 374-398 127-151 (427)
165 1g25_A CDK-activating kinase a 33.2 23 0.0008 26.1 2.4 46 171-216 4-56 (65)
166 2i47_A ADAM 17; TACE-inhibitor 33.1 18 0.00061 35.4 2.2 20 379-398 179-200 (288)
167 4ger_A Gentlyase metalloprotea 32.7 20 0.00068 36.0 2.4 41 382-422 125-168 (304)
168 2ct0_A Non-SMC element 1 homol 32.4 16 0.00054 29.0 1.3 49 141-216 13-65 (74)
169 3lqb_A Hatching enzyme, LOC792 32.2 16 0.00056 34.3 1.6 13 386-398 93-105 (199)
170 2xeu_A Ring finger protein 4; 32.2 18 0.00062 26.2 1.6 46 171-216 4-57 (64)
171 1z6u_A NP95-like ring finger p 31.8 27 0.00091 31.0 2.9 29 188-216 95-126 (150)
172 2rjp_A Adamts-4; metalloprotea 31.6 23 0.00078 35.1 2.7 22 374-398 134-155 (316)
173 2cs3_A Protein C14ORF4, MY039 30.9 17 0.00057 29.8 1.2 33 142-174 14-46 (93)
174 1cge_A Fibroblast collagenase; 30.9 18 0.00062 32.6 1.6 15 386-401 111-125 (168)
175 3dnz_A Thermolysin; hydrolase, 30.8 24 0.00082 35.6 2.7 41 382-422 132-175 (316)
176 1e4u_A Transcriptional repress 30.6 37 0.0013 26.8 3.2 46 171-216 12-63 (78)
177 1r55_A ADAM 33; metalloproteas 30.4 30 0.001 32.2 3.2 15 384-398 134-148 (214)
178 2xs4_A Karilysin protease; hyd 30.0 19 0.00065 32.3 1.6 15 386-401 115-129 (167)
179 2ect_A Ring finger protein 126 29.8 39 0.0013 25.7 3.2 27 190-216 37-65 (78)
180 3ztg_A E3 ubiquitin-protein li 29.8 23 0.00077 28.1 1.9 43 170-213 13-60 (92)
181 3lrq_A E3 ubiquitin-protein li 29.7 23 0.00078 28.9 1.9 44 171-215 23-70 (100)
182 1hy7_A Stromelysin-1, MMP-3; m 29.6 22 0.00074 32.2 1.9 15 386-401 113-127 (173)
183 2v4b_A Adamts-1; zymogen, prot 29.5 18 0.00061 35.6 1.5 15 384-398 141-155 (300)
184 2ep4_A Ring finger protein 24; 29.5 44 0.0015 25.2 3.5 27 189-215 36-64 (74)
185 1bqb_A Protein (aureolysin); h 29.2 27 0.00091 35.0 2.7 41 382-422 134-177 (301)
186 3ng2_A RNF4, snurf, ring finge 29.0 20 0.00069 26.7 1.4 30 187-216 33-64 (71)
187 2rjq_A Adamts-5; metalloprotea 28.7 27 0.00092 35.5 2.7 22 374-398 134-155 (378)
188 2kpi_A Uncharacterized protein 28.5 15 0.0005 27.7 0.5 15 296-310 36-50 (56)
189 3b8z_A Protein adamts-5; alpha 28.0 27 0.00093 32.5 2.4 15 384-398 139-153 (217)
190 3hct_A TNF receptor-associated 27.6 34 0.0012 28.6 2.7 45 171-216 19-66 (118)
191 1jjd_A Metallothionein, SMTA; 27.6 34 0.0012 25.9 2.3 29 172-200 9-38 (55)
192 2ecg_A Baculoviral IAP repeat- 27.4 41 0.0014 25.8 3.0 25 189-215 43-68 (75)
193 3gor_A Putative metal-dependen 27.0 39 0.0013 28.6 3.0 32 383-414 121-157 (157)
194 3jvi_A Protein tyrosine phosph 27.0 48 0.0016 29.7 3.7 32 472-504 126-159 (161)
195 3lq0_A Proastacin; metallopept 26.8 23 0.00079 34.1 1.6 15 387-401 121-135 (235)
196 3hcs_A TNF receptor-associated 26.6 39 0.0013 30.0 3.1 45 171-216 19-66 (170)
197 4aw6_A CAAX prenyl protease 1 26.4 31 0.0011 36.7 2.7 22 379-400 322-343 (482)
198 1i76_A MMP-8;, neutrophil coll 26.4 27 0.00091 31.3 1.9 15 386-401 112-126 (163)
199 1iym_A EL5; ring-H2 finger, ub 26.3 57 0.0019 22.9 3.4 24 190-213 28-53 (55)
200 1rmd_A RAG1; V(D)J recombinati 26.0 34 0.0012 28.4 2.4 45 171-216 24-71 (116)
201 1hv5_A Stromelysin 3; inhibiti 26.0 27 0.00094 31.2 1.9 12 386-397 113-124 (165)
202 3knv_A TNF receptor-associated 25.8 19 0.00063 31.7 0.7 45 170-215 31-78 (141)
203 2gi4_A Possible phosphotyrosin 25.8 15 0.00052 32.9 0.1 30 472-502 123-152 (156)
204 1u4g_A Elastase, pseudolysin; 25.6 32 0.0011 34.5 2.4 38 385-422 133-173 (301)
205 3k7n_A K-like; SVMP, hydrolase 25.5 41 0.0014 34.7 3.4 15 384-398 137-151 (397)
206 3k7l_A Atragin; SVMP, metallop 25.1 42 0.0014 35.0 3.4 25 374-398 132-156 (422)
207 2f42_A STIP1 homology and U-bo 24.4 42 0.0014 31.0 2.8 47 168-215 104-153 (179)
208 2kiz_A E3 ubiquitin-protein li 23.7 59 0.002 24.0 3.2 26 190-215 36-63 (69)
209 2ecj_A Tripartite motif-contai 23.6 54 0.0019 23.1 2.8 30 171-201 16-45 (58)
210 2vqx_A Metalloproteinase; ther 22.7 41 0.0014 34.3 2.7 39 384-422 154-195 (341)
211 3ayu_A 72 kDa type IV collagen 22.4 32 0.0011 31.0 1.6 11 387-397 115-125 (167)
212 1slm_A Stromelysin-1; hydrolas 22.4 31 0.0011 33.5 1.6 12 386-397 195-206 (255)
213 3nqx_A MCP-02, secreted metall 22.0 41 0.0014 33.8 2.4 39 384-422 133-174 (306)
214 1y93_A Macrophage metalloelast 21.8 37 0.0013 30.3 1.9 12 386-397 108-119 (159)
215 2gvi_A Conserved hypothetical 21.7 24 0.00082 33.1 0.7 31 242-274 172-202 (204)
216 3g5c_A ADAM 22; alpha/beta fol 21.7 57 0.002 34.9 3.7 16 383-398 131-146 (510)
217 2jne_A Hypothetical protein YF 20.3 18 0.0006 30.6 -0.5 10 144-153 33-42 (101)
No 1
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.89 E-value=1.6e-23 Score=197.30 Aligned_cols=125 Identities=26% Similarity=0.496 Sum_probs=106.9
Q ss_pred CCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCCcCCCCcc
Q 010581 140 PRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAG 219 (507)
Q Consensus 140 ~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G 219 (507)
....++|.+|+++|....++.++++.||+.||+|..|+++|.+..| .+++++||+.||.++|+++|.+|+++|.+.. .
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~ 134 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-V 134 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-C
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-e
Confidence 4567899999999986667899999999999999999999998765 7899999999999999999999999998753 1
Q ss_pred eEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhc
Q 010581 220 LIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAI 276 (507)
Q Consensus 220 ~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav 276 (507)
.+.+.. + +||..||+|..|++.|..|+.|+...||++||..||.++.
T Consensus 135 v~~a~~-----~-----~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 135 VRRAQD-----F-----VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp CCEETT-----E-----ECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred EEecCC-----C-----CEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 233322 2 2499999999999987767788888899999999998763
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=184.89 Aligned_cols=121 Identities=18% Similarity=0.372 Sum_probs=103.7
Q ss_pred CCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCCcCCCCcceE
Q 010581 142 SYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLI 221 (507)
Q Consensus 142 ~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G~I 221 (507)
+.++|++|+++|.+++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|.+|+++|.+.+ ..|
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~ 80 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV-QRV 80 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTS-CEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCc-eEE
Confidence 4689999999998788999999999999999999999999989999999999999999999999999999999743 245
Q ss_pred EeeecCccccccCCCccC--CCCcccCCCCCccccCCceeEecCCccccchhhhhh
Q 010581 222 EYRCHPFWAQKYCPSHEH--DHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESA 275 (507)
Q Consensus 222 ~~~~~~fWgqkyCp~h~H--~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sa 275 (507)
.+... . || ++||+|..|++.+. +..|.+.||++||..++.++
T Consensus 81 ~a~~~-----~-----~H~~~~CF~C~~C~~~l~--~~~f~~~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 81 TYNNF-----S-----WHASTECFLCSCCSKCLI--GQKFMPVEGMVFCSVECKKR 124 (126)
T ss_dssp EETTE-----E-----EESSTTTSBCTTTCCBCT--TSEEEEETTEEESSHHHHHS
T ss_pred ECCCC-----E-----eeCCCCCcCcCCCCCccC--CCeeEeECCEEcchHHhhhh
Confidence 55432 2 38 99999999999664 44566678999999665443
No 3
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.88 E-value=3e-23 Score=193.15 Aligned_cols=125 Identities=26% Similarity=0.497 Sum_probs=106.3
Q ss_pred CCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCCcCCCCcceE
Q 010581 142 SYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLI 221 (507)
Q Consensus 142 ~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G~I 221 (507)
..++|++|+++|.+..++.++++.||+.||+|..|+++|.+..| .+++++||+.||.++|+++|.+|+++|.+.. .++
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~-~v~ 82 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VVR 82 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTS-EEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCc-EEE
Confidence 46899999999986668999999999999999999999998764 7899999999999999999999999998753 123
Q ss_pred EeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhccC
Q 010581 222 EYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMD 278 (507)
Q Consensus 222 ~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~d 278 (507)
.+.. +. ||..||+|..|++.|..|+.|+...||++||..|+..+...
T Consensus 83 ~a~~-----~~-----~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 83 RAQD-----FV-----YHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp EETT-----EE-----EEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHC
T ss_pred EcCC-----ce-----EeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhc
Confidence 3332 22 49999999999998776778888889999999999888664
No 4
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.88 E-value=4.5e-23 Score=183.50 Aligned_cols=122 Identities=20% Similarity=0.444 Sum_probs=103.4
Q ss_pred CCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCC--CceEeeCCcccchhhhhhhccc--cccccCCCcCCCCc
Q 010581 143 YKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITE--HEFSLSGKDPYHKSCFKELTHP--KCEVCHQYIPTNGA 218 (507)
Q Consensus 143 ~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~--~~F~~~dg~pYCk~CY~k~f~p--kC~~C~k~I~~~~~ 218 (507)
.++|++|+++|.++.++.++++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|..|+++|.+.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e- 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE- 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-
Confidence 4689999999986667999999999999999999999973 6899999999999999999999 9999999998753
Q ss_pred ceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhc
Q 010581 219 GLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAI 276 (507)
Q Consensus 219 G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav 276 (507)
..+.+.. +. ||+.||+|..|++.|+.+.+|+. .||++||..|+..+.
T Consensus 81 ~~~~a~~-----~~-----~H~~CF~C~~C~~~L~~g~~f~~-~~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 81 MTMRVKD-----KV-----YHLECFKCAACQKHFCVGDRYLL-INSDIVCEQDIYEWT 127 (131)
T ss_dssp EEEEETT-----EE-----EEGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGHHHHH
T ss_pred eeEeeCC-----ce-----ECccCcccCCCCCCCCCCCEEEE-ECCEEEcHHHHHHHh
Confidence 2344443 23 39999999999997765666555 579999999998764
No 5
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.86 E-value=2e-22 Score=190.83 Aligned_cols=127 Identities=21% Similarity=0.416 Sum_probs=105.2
Q ss_pred CCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCC--CceEeeCCcccchhhhhhhccc--cccccCCCcCCC
Q 010581 141 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITE--HEFSLSGKDPYHKSCFKELTHP--KCEVCHQYIPTN 216 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~--~~F~~~dg~pYCk~CY~k~f~p--kC~~C~k~I~~~ 216 (507)
...++|++|+++|.+..++.++++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|..|+++|.+.
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 356899999999986557999999999999999999999985 6899999999999999999999 799999999875
Q ss_pred CcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhccCC
Q 010581 217 GAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDT 279 (507)
Q Consensus 217 ~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~dt 279 (507)
+ ..|.+.. +. ||+.||+|..|++.|..+..|+ +.+|++||..||..++...
T Consensus 83 e-~~i~a~~-----~~-----~H~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~c~~~~~~~~ 133 (188)
T 1rut_X 83 E-LVMRAQG-----NV-----YHLKCFTCSTCRNRLVPGDRFH-YINGSLFCEHDRPTALING 133 (188)
T ss_dssp S-EEEEETT-----EE-----ECGGGCBCTTTCCBCCTTCEEE-EETTEEEEGGGCCTTTC--
T ss_pred c-EEEEcCC-----CE-----EeCCCCeECCCCCCCCCCCeEE-EECCeEECHHHHHHHhccc
Confidence 3 2344543 22 3999999999999776566654 5678999999998776543
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.82 E-value=7.3e-21 Score=180.50 Aligned_cols=122 Identities=25% Similarity=0.529 Sum_probs=102.3
Q ss_pred CCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccc----------------
Q 010581 142 SYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPK---------------- 205 (507)
Q Consensus 142 ~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pk---------------- 205 (507)
+.++|.+|+++|..++.+.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+
T Consensus 6 ~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~ 85 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKG 85 (192)
T ss_dssp CCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCC
T ss_pred CCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCC
Confidence 4579999999998788999999999999999999999999989999999999999999999887
Q ss_pred --------------------------------ccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccc
Q 010581 206 --------------------------------CEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLES 253 (507)
Q Consensus 206 --------------------------------C~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~ 253 (507)
|..|+++|.+.. .|.+... .||.+||+|..|++.|.
T Consensus 86 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~ 153 (192)
T 1b8t_A 86 ESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE--KVIGAGK----------SWHKSCFRCAKCGKSLE 153 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS--CEEETTE----------EECTTTCBCTTTCCBCC
T ss_pred cccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE--EEecCCC----------ccchhcCCccccCCCCC
Confidence 667888887532 3444322 24999999999999664
Q ss_pred cCCceeEecCCccccchhhhhhcc
Q 010581 254 WNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 254 ~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
. +. |...||++||..||..+..
T Consensus 154 ~-~~-~~~~~g~~yC~~cy~~~f~ 175 (192)
T 1b8t_A 154 S-TT-LADKDGEIYCKGCYAKNFG 175 (192)
T ss_dssp S-SS-EEEETTEEEEHHHHHHHTC
T ss_pred C-Cc-ccccCCEEeCHHHHHHhcC
Confidence 2 34 5578899999999988754
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.80 E-value=5.3e-20 Score=156.57 Aligned_cols=98 Identities=22% Similarity=0.446 Sum_probs=85.8
Q ss_pred CCCCCCCCCCCccC-CCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCCcCCCCcc
Q 010581 141 RSYKVCGGCNCDIG-YGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAG 219 (507)
Q Consensus 141 ~~~~~C~~C~k~I~-~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G 219 (507)
.+.++|++|+++|. +++++.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+++|..|+++|.+.+ .
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~ 81 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGD-Q 81 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSS-C
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCC-e
Confidence 46789999999996 478999999999999999999999999888999999999999999999999999999998532 2
Q ss_pred eEEeeecCccccccCCCccCCCCcccCCCC
Q 010581 220 LIEYRCHPFWAQKYCPSHEHDHTSRCCSCE 249 (507)
Q Consensus 220 ~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~ 249 (507)
.|.++. +. ||++||+|..|+
T Consensus 82 ~~~a~~-----~~-----~H~~CF~C~~C~ 101 (101)
T 2cup_A 82 NVEYKG-----TV-----WHKDCFSGPSSG 101 (101)
T ss_dssp EEESSS-----CE-----EETTTCCCTTCC
T ss_pred EEEeCC-----cc-----hHHhCCCCCCCC
Confidence 455543 33 399999999995
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=2.1e-18 Score=152.49 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=89.2
Q ss_pred CCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCC--CCceEeeCCcccchhhhhhhccc--cccccCCCcCCC
Q 010581 141 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPIT--EHEFSLSGKDPYHKSCFKELTHP--KCEVCHQYIPTN 216 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~--~~~F~~~dg~pYCk~CY~k~f~p--kC~~C~k~I~~~ 216 (507)
...++|++|+++|..+.++.++++.||+.||+|..|+++|. +..|+.+++++||+.||.++|++ +|..|+++|.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 45689999999998666799999999999999999999997 35799999999999999999999 999999999974
Q ss_pred CcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 217 GAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 217 ~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
. +.+. ++. ++.++.|.+.|+++||..|+....+
T Consensus 83 ~---~~~~------------------------g~~-~l~g~~f~~~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 83 D---VMVV------------------------GEP-TLMGGEFGDEDERLITRLENTQFDA 115 (122)
T ss_dssp E---SSSS------------------------SSS-SCCSCTTCCTTCCCCEECTTTTTTC
T ss_pred h---eEEc------------------------CCc-CCCCCccEecCCEeEccCcchhchh
Confidence 2 2111 111 2334446777899999999877654
No 9
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.1e-17 Score=133.87 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccC-CCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010581 130 FPPYDPSHYYPRSYKVCGGCNCDIG-YGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 208 (507)
Q Consensus 130 ~~pYC~~~y~~~~~~~C~~C~k~I~-~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~ 208 (507)
+.|||..||...+.++|++|+++|. ++.++.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+++|++
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 3799999999999999999999997 478899999999999999999999999989999999999999999999999974
No 10
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=8.4e-17 Score=131.22 Aligned_cols=78 Identities=23% Similarity=0.445 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010581 130 FPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 208 (507)
Q Consensus 130 ~~pYC~~~y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~ 208 (507)
++|||..||...+.++|++|+++|. +++|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+++|+.
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCccchhHHhhhcCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 3789999999999999999999997 58899999999999999999999999889999999999999999999999974
No 11
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=9.6e-17 Score=130.87 Aligned_cols=78 Identities=21% Similarity=0.438 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010581 130 FPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 208 (507)
Q Consensus 130 ~~pYC~~~y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~ 208 (507)
+.|||..||...+.++|++|+++|. ++.|.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 4799999999999999999999996 56899999999999999999999999889999999999999999999999964
No 12
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2.1e-16 Score=129.46 Aligned_cols=77 Identities=19% Similarity=0.354 Sum_probs=71.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEee-CCcccchhhhhhhccccccc
Q 010581 130 FPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLS-GKDPYHKSCFKELTHPKCEV 208 (507)
Q Consensus 130 ~~pYC~~~y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~-dg~pYCk~CY~k~f~pkC~~ 208 (507)
+.|||..||. .+.++|++|+++|. ++++.++++.||+.||+|..|+++|.+..|+.. ++++||+.||.++|+|+|++
T Consensus 3 g~~yC~~~y~-~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 3 SGSSGEGCYV-ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCCCCCCCCC-SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CCEECHHHhh-cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 3899999998 78999999999997 689999999999999999999999998888876 78999999999999999974
No 13
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.2e-16 Score=137.95 Aligned_cols=103 Identities=17% Similarity=0.333 Sum_probs=83.7
Q ss_pred CCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCC--CceEeeCCcccchhhhhhhccccccccCCCcCCCCcce
Q 010581 143 YKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITE--HEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGL 220 (507)
Q Consensus 143 ~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~--~~F~~~dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G~ 220 (507)
.++|++|+++|.+..++.++++.||+.||+|..|+++|.+ ..|+.+++++||+.||.++|+|+|..|.. +. .
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~---~ 76 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GD---V 76 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CS---C
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---Cc---e
Confidence 5789999999986668999999999999999999999985 58999999999999999999999998862 11 1
Q ss_pred EEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 221 IEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 221 I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
| + |.+++..|++ |.+.|+++||..|+.....
T Consensus 77 ~-----------------~--------~~~~~~~g~~-f~~~~~~~~C~~~~~~~~~ 107 (114)
T 1j2o_A 77 M-----------------V--------VGEPTLMGGE-FGDEDERLITRLENTQFDA 107 (114)
T ss_dssp C-----------------C--------SSCSSTTSSB-CCCSSSCCCEEEECTTCCC
T ss_pred e-----------------E--------cCCccCCCCe-eEEcCCEeecchhhhcccc
Confidence 1 1 3344333555 5777899999999876544
No 14
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=4.7e-16 Score=127.33 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=72.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCC-ceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010581 131 PPYDPSHYYPRSYKVCGGCNCDIGYG-NYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 207 (507)
Q Consensus 131 ~pYC~~~y~~~~~~~C~~C~k~I~~g-~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~ 207 (507)
.|||..||...+.++|++|+++|.++ .++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|.
T Consensus 3 ~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 3 SGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp SCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 78999999999999999999999754 579999999999999999999999998999999999999999999999985
No 15
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.62 E-value=1.4e-17 Score=157.86 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=93.9
Q ss_pred cCCCccccc--chHHhHHHHhcc-cCCCCCCCCCCCCCCCCC--------------------------------------
Q 010581 104 PNGQRWRSN--TDEDYAWALQDS-QLNPSFPPYDPSHYYPRS-------------------------------------- 142 (507)
Q Consensus 104 ~~~~~wh~e--~ce~c~raLq~~-l~~~~~~pYC~~~y~~~~-------------------------------------- 142 (507)
..+..||.+ .|..|.++|... +....+.+||..||...+
T Consensus 25 a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~ 104 (192)
T 1b8t_A 25 CEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPN 104 (192)
T ss_dssp ETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred eCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCCcC
Confidence 356789988 999999988543 333334888877774332
Q ss_pred ----------CCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCC
Q 010581 143 ----------YKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQY 212 (507)
Q Consensus 143 ----------~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~C~k~ 212 (507)
.++|++|+++|.+++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..|+++
T Consensus 105 ~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~ 184 (192)
T 1b8t_A 105 ASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQG 184 (192)
T ss_dssp CCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCC
T ss_pred ccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCc
Confidence 2359999999987888999999999999999999999998899999999999999999999999999999
Q ss_pred cCC
Q 010581 213 IPT 215 (507)
Q Consensus 213 I~~ 215 (507)
|..
T Consensus 185 ~g~ 187 (192)
T 1b8t_A 185 AGA 187 (192)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 16
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.5e-15 Score=122.87 Aligned_cols=71 Identities=20% Similarity=0.504 Sum_probs=66.7
Q ss_pred CCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccch-hhhhhhccccccccCCCcC
Q 010581 144 KVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHK-SCFKELTHPKCEVCHQYIP 214 (507)
Q Consensus 144 ~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk-~CY~k~f~pkC~~C~k~I~ 214 (507)
|+|++|+++|.+++.+.++++.||+.||+|..|+++|.+..|+.+++++||+ .||.++|+++|..|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5799999999878999999999999999999999999998999999999999 6999999999999997654
No 17
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.9e-15 Score=123.61 Aligned_cols=76 Identities=21% Similarity=0.524 Sum_probs=70.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCC-CceE-eeCCcccchhhhhhhcccccc
Q 010581 131 PPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITE-HEFS-LSGKDPYHKSCFKELTHPKCE 207 (507)
Q Consensus 131 ~pYC~~~y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~-~~F~-~~dg~pYCk~CY~k~f~pkC~ 207 (507)
.|||..||...+.++|++|+++|. ++++.++++.||++||+|..|+++|.. ..|. .+++++||+.||.++|++.|.
T Consensus 3 ~~yC~~~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 3 SGSSGKDYWGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCCCCCCSSCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CccchhHHhhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 789999999999999999999997 889999999999999999999999974 5677 489999999999999999875
No 18
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.57 E-value=1.2e-15 Score=124.85 Aligned_cols=73 Identities=25% Similarity=0.476 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCCc
Q 010581 141 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYI 213 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~C~k~I 213 (507)
.+.++|.+|+++|.+++.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|..|++..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 4568999999999878899999999999999999999999998999999999999999999999999999864
No 19
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=120.57 Aligned_cols=72 Identities=24% Similarity=0.516 Sum_probs=66.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccC----CCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhh
Q 010581 130 FPPYDPSHYYPRSYKVCGGCNCDIG----YGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKEL 201 (507)
Q Consensus 130 ~~pYC~~~y~~~~~~~C~~C~k~I~----~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~ 201 (507)
+.|||..||...+.++|++|+++|. ..+.+.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred CCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 3799999999999999999999997 34889999999999999999999999998999999999999999763
No 20
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=8.5e-15 Score=118.41 Aligned_cols=70 Identities=16% Similarity=0.442 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccch-hhhhhhccccccc
Q 010581 139 YPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHK-SCFKELTHPKCEV 208 (507)
Q Consensus 139 ~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk-~CY~k~f~pkC~~ 208 (507)
+..+.++|++|+++|.+++.+.++++.||++||+|..|+++|.+..|+.+++++||+ .||.++|+|+|..
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 445678999999999878999999999999999999999999998999999999999 7999999999963
No 21
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=8.6e-15 Score=120.28 Aligned_cols=68 Identities=25% Similarity=0.510 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010581 140 PRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 208 (507)
Q Consensus 140 ~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~ 208 (507)
....++|.+|+++|.+++++.++++.||++||+|..|+++|.+ .|+.+++++||+.||.++|+++|..
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 3457899999999988899999999999999999999999986 7999999999999999999999974
No 22
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=5.3e-15 Score=119.77 Aligned_cols=70 Identities=16% Similarity=0.417 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCccC---CCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccC
Q 010581 141 RSYKVCGGCNCDIG---YGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCH 210 (507)
Q Consensus 141 ~~~~~C~~C~k~I~---~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~C~ 210 (507)
.+.++|++|+++|. +.+++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..+.
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 46789999999997 34899999999999999999999999998999999999999999999999999875
No 23
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=8.3e-15 Score=122.45 Aligned_cols=70 Identities=21% Similarity=0.454 Sum_probs=65.0
Q ss_pred CCCCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010581 138 YYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 208 (507)
Q Consensus 138 y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~ 208 (507)
+...+.++|++|+++|. ++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|..
T Consensus 20 ~~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 20 PAGKRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CTTTCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 44567899999999995 88999999999999999999999999989999999999999999999999974
No 24
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=9.7e-15 Score=115.82 Aligned_cols=67 Identities=19% Similarity=0.452 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010581 141 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 208 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~ 208 (507)
.+.++|.+|+++|. ++.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 46789999999996 67899999999999999999999999889999999999999999999999974
No 25
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.1e-14 Score=115.70 Aligned_cols=67 Identities=19% Similarity=0.399 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010581 141 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 208 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~ 208 (507)
.+.++|.+|+++|. ++.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 46789999999997 67899999999999999999999999989999999999999999999999964
No 26
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.4e-14 Score=115.62 Aligned_cols=68 Identities=21% Similarity=0.484 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCccCCC-ceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010581 141 RSYKVCGGCNCDIGYG-NYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 208 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g-~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~ 208 (507)
.+.++|++|+++|.++ .++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 4678999999999765 6899999999999999999999999989999999999999999999999973
No 27
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.2e-14 Score=115.96 Aligned_cols=68 Identities=19% Similarity=0.431 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCccCC-CceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010581 141 RSYKVCGGCNCDIGY-GNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 208 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~-g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~ 208 (507)
.+.++|.+|+++|.+ +.++.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 467899999999976 48899999999999999999999999989999999999999999999999974
No 28
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=2.4e-14 Score=119.92 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=68.0
Q ss_pred CCCCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCCc
Q 010581 138 YYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYI 213 (507)
Q Consensus 138 y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~C~k~I 213 (507)
|.....++|.+|++.|.+++.+.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+++|..+..+.
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g 85 (91)
T 2d8y_A 10 FQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG 85 (91)
T ss_dssp SCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCC
T ss_pred cCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcC
Confidence 3345678999999999877899999999999999999999999988899999999999999999999998555443
No 29
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.48 E-value=1.7e-14 Score=113.37 Aligned_cols=64 Identities=23% Similarity=0.501 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccc
Q 010581 141 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPK 205 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pk 205 (507)
.+.++|++|+++|. ++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+||
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 3 MGVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred cCCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 45789999999997 88999999999999999999999999989999999999999999999986
No 30
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=3e-14 Score=113.87 Aligned_cols=66 Identities=23% Similarity=0.575 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCccCC---CceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccc
Q 010581 141 RSYKVCGGCNCDIGY---GNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKC 206 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~---g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC 206 (507)
.+.++|++|+++|.. ..++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 467899999999973 488999999999999999999999999899999999999999999999986
No 31
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=3.4e-14 Score=114.71 Aligned_cols=67 Identities=21% Similarity=0.371 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCccCC-CceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010581 141 RSYKVCGGCNCDIGY-GNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 207 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~-g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~ 207 (507)
.+.++|++|+++|.. +.++.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+|+|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 457899999999974 5678999999999999999999999988999999999999999999999996
No 32
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.45 E-value=1.7e-15 Score=143.12 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=86.7
Q ss_pred ccCCCccccc--chHHhHHHHhc---ccCCCCCCCCCCCCCCCCCCC--CCCCCCCccCCC-ceEEecCccccCCCcccC
Q 010581 103 RPNGQRWRSN--TDEDYAWALQD---SQLNPSFPPYDPSHYYPRSYK--VCGGCNCDIGYG-NYLGCMGTYFHPNCFRCR 174 (507)
Q Consensus 103 k~~~~~wh~e--~ce~c~raLq~---~l~~~~~~pYC~~~y~~~~~~--~C~~C~k~I~~g-~~l~algk~wHp~CF~C~ 174 (507)
...+..||.+ .|..|.++|.. .+....+.|||..||...+.+ +|.+|+++|... .++.++++.||+.||+|.
T Consensus 22 ~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~ 101 (188)
T 1rut_X 22 YAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCS 101 (188)
T ss_dssp EETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBCT
T ss_pred EecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeEC
Confidence 3456789998 99999999964 444444599999999777777 799999999754 478999999999999999
Q ss_pred CCCCCCC-CCceEeeCCcccchhhhhhhccccccccCC
Q 010581 175 SCGYPIT-EHEFSLSGKDPYHKSCFKELTHPKCEVCHQ 211 (507)
Q Consensus 175 ~C~~~L~-~~~F~~~dg~pYCk~CY~k~f~pkC~~C~k 211 (507)
.|+++|. +..|+..++++||+.||.+++.++|..++.
T Consensus 102 ~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 102 TCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGG 139 (188)
T ss_dssp TTCCBCCTTCEEEEETTEEEEGGGCCTTTC--------
T ss_pred CCCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCC
Confidence 9999996 567999999999999999999999987765
No 33
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.44 E-value=1.3e-15 Score=135.15 Aligned_cols=103 Identities=16% Similarity=0.250 Sum_probs=86.8
Q ss_pred ccCCCccccc--chHHhHHHHhc---ccCCCCCCCCCCCCCCCCCCC--CCCCCCCccCCC-ceEEecCccccCCCcccC
Q 010581 103 RPNGQRWRSN--TDEDYAWALQD---SQLNPSFPPYDPSHYYPRSYK--VCGGCNCDIGYG-NYLGCMGTYFHPNCFRCR 174 (507)
Q Consensus 103 k~~~~~wh~e--~ce~c~raLq~---~l~~~~~~pYC~~~y~~~~~~--~C~~C~k~I~~g-~~l~algk~wHp~CF~C~ 174 (507)
...+..||.+ .|..|..+|.+ .+....+.|||..+|...+.+ +|.+|+++|... .++.++++.||+.||+|.
T Consensus 19 ~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~ 98 (131)
T 2xjy_A 19 KAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCA 98 (131)
T ss_dssp EETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBCT
T ss_pred EECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCcccC
Confidence 3456789998 99999998842 334444599999999877777 999999999753 578999999999999999
Q ss_pred CCCCCCC-CCceEeeCCcccchhhhhhhcccc
Q 010581 175 SCGYPIT-EHEFSLSGKDPYHKSCFKELTHPK 205 (507)
Q Consensus 175 ~C~~~L~-~~~F~~~dg~pYCk~CY~k~f~pk 205 (507)
.|+++|. +..|+..++++||..||.++|+++
T Consensus 99 ~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 99 ACQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp TTCCBCCTTCEEEEETTEEEEGGGHHHHHHHH
T ss_pred CCCCCCCCCCEEEEECCEEEcHHHHHHHhhcc
Confidence 9999995 667999999999999999988753
No 34
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1.2e-13 Score=109.74 Aligned_cols=66 Identities=21% Similarity=0.450 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010581 141 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 207 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~ 207 (507)
.+.++|.+|+++|. ++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++++.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 35689999999997 7899999999999999999999999998999999999999999999988764
No 35
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=1.5e-13 Score=114.60 Aligned_cols=66 Identities=20% Similarity=0.512 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010581 141 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 207 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~ 207 (507)
...++|.+|++.|. ++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|.
T Consensus 23 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 23 QRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 45689999999997 5889999999999999999999999988999999999999999999999985
No 36
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.42 E-value=5.4e-15 Score=130.49 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=86.1
Q ss_pred ccCCCccccc--chHHhHHHHhc-ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCC-CceEEecCcccc--CCCcccCCC
Q 010581 103 RPNGQRWRSN--TDEDYAWALQD-SQLNPSFPPYDPSHYYPRSYKVCGGCNCDIGY-GNYLGCMGTYFH--PNCFRCRSC 176 (507)
Q Consensus 103 k~~~~~wh~e--~ce~c~raLq~-~l~~~~~~pYC~~~y~~~~~~~C~~C~k~I~~-g~~l~algk~wH--p~CF~C~~C 176 (507)
...+..||.+ .|..|.++|.. .+....+.|||..+|...+.++|++|+++|.. +.++.++++.|| ++||+|..|
T Consensus 20 ~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C 99 (126)
T 2xqn_T 20 QAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCC 99 (126)
T ss_dssp EETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTT
T ss_pred eeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCC
Confidence 3456789998 99999998854 33334449999999988899999999999975 468999999999 999999999
Q ss_pred CCCCCCCceEeeCCcccchhhhhhhc
Q 010581 177 GYPITEHEFSLSGKDPYHKSCFKELT 202 (507)
Q Consensus 177 ~~~L~~~~F~~~dg~pYCk~CY~k~f 202 (507)
+++|.+..|+..++++||+.+|.++|
T Consensus 100 ~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 100 SKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CCccCCCeeEeECCEEcchHHhhhhc
Confidence 99999889999999999998877765
No 37
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=8.4e-14 Score=113.58 Aligned_cols=66 Identities=18% Similarity=0.454 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010581 141 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 207 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~ 207 (507)
...++|.+|++.|. ++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|++.
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 45689999999997 5799999999999999999999999988899999999999999999999875
No 38
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1.5e-13 Score=112.30 Aligned_cols=72 Identities=19% Similarity=0.409 Sum_probs=63.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCC-cccchhhhhhhcc
Q 010581 131 PPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGK-DPYHKSCFKELTH 203 (507)
Q Consensus 131 ~pYC~~~y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg-~pYCk~CY~k~f~ 203 (507)
.+||..||...+.++|++|+++|. ++++.++++.||++||+|..|+++|....++..++ .+||+.||.+++.
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCcchHHHHhHhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 689999999999999999999997 78999999999999999999999998766666555 5799999987543
No 39
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=2.4e-13 Score=108.44 Aligned_cols=68 Identities=22% Similarity=0.520 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCccCC-CceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccccc
Q 010581 141 RSYKVCGGCNCDIGY-GNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVC 209 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~-g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~C 209 (507)
.+.++|.+|+++|.. +..+.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++| .+|..+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~-~~~~~~ 71 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL-ESGPSS 71 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH-HTCSSC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH-ccCCCC
Confidence 457899999999975 46899999999999999999999999888999999999999999987 445543
No 40
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=2.1e-13 Score=111.46 Aligned_cols=66 Identities=20% Similarity=0.389 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010581 140 PRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 207 (507)
Q Consensus 140 ~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~ 207 (507)
..+.++|++|+++|. +++|.++++.||++||+|..|+++|.+.. +.+++++||+.||.++|+|++.
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred ccCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 346789999999997 88899999999999999999999999875 5899999999999999999764
No 41
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=2.5e-13 Score=109.44 Aligned_cols=64 Identities=25% Similarity=0.531 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCC-CCceEeeCCcccchhhhhhhcccc
Q 010581 141 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPIT-EHEFSLSGKDPYHKSCFKELTHPK 205 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~-~~~F~~~dg~pYCk~CY~k~f~pk 205 (507)
.+.++|++|+++|. +++|.++++.||++||+|..|+++|. +..|+.+++++||+.||.+++...
T Consensus 3 ~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 3 SGSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred cCcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 46789999999996 68999999999999999999999999 778999999999999999977653
No 42
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.38 E-value=5.5e-13 Score=117.76 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=68.2
Q ss_pred CCCCCC--CCCCCCCccCC-CceEEecCccccCCCcccCCCCCCCC-CCceEeeCCcccchhhhhhhccccccccCCCcC
Q 010581 139 YPRSYK--VCGGCNCDIGY-GNYLGCMGTYFHPNCFRCRSCGYPIT-EHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIP 214 (507)
Q Consensus 139 ~~~~~~--~C~~C~k~I~~-g~~l~algk~wHp~CF~C~~C~~~L~-~~~F~~~dg~pYCk~CY~k~f~pkC~~C~k~I~ 214 (507)
...+.. +|++|++.|.. +.++.++++.||+.||+|..|+++|. +..|+.+++++||+.||.++|+++|..|...+.
T Consensus 2 ~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~ 81 (123)
T 2l3k_A 2 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGS 81 (123)
T ss_dssp CSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSC
T ss_pred hhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCc
Confidence 345566 89999999975 45779999999999999999999994 567999999999999999999999999988776
Q ss_pred CC
Q 010581 215 TN 216 (507)
Q Consensus 215 ~~ 216 (507)
..
T Consensus 82 ~~ 83 (123)
T 2l3k_A 82 GG 83 (123)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 43
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.36 E-value=6.6e-13 Score=105.19 Aligned_cols=65 Identities=20% Similarity=0.378 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCCccCCCc-eEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcc
Q 010581 139 YPRSYKVCGGCNCDIGYGN-YLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTH 203 (507)
Q Consensus 139 ~~~~~~~C~~C~k~I~~g~-~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~ 203 (507)
...+.++|++|+++|..++ ++.++++.||+.||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 7 ~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 3467789999999997555 5789999999999999999999998899999999999999999875
No 44
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.34 E-value=4.2e-14 Score=131.37 Aligned_cols=104 Identities=17% Similarity=0.326 Sum_probs=85.8
Q ss_pred cCCCccccc--chHHhHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCc-eEEecCccccCCCcccCCCCCCC
Q 010581 104 PNGQRWRSN--TDEDYAWALQDSQLNPSFPPYDPSHYYPRSYKVCGGCNCDIGYGN-YLGCMGTYFHPNCFRCRSCGYPI 180 (507)
Q Consensus 104 ~~~~~wh~e--~ce~c~raLq~~l~~~~~~pYC~~~y~~~~~~~C~~C~k~I~~g~-~l~algk~wHp~CF~C~~C~~~L 180 (507)
..+..||.+ .|..|.++|........+.|||..||...+.++|.+|+++|..++ ++.++++.||+.||+|..|+++|
T Consensus 24 a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L 103 (169)
T 2rgt_A 24 ALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQL 103 (169)
T ss_dssp CSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBC
T ss_pred ECCcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCC
Confidence 457799988 999999998554334445999999998889999999999997655 56899999999999999999999
Q ss_pred C-CCceEe-eCCcccchhhhhhhcccccc
Q 010581 181 T-EHEFSL-SGKDPYHKSCFKELTHPKCE 207 (507)
Q Consensus 181 ~-~~~F~~-~dg~pYCk~CY~k~f~pkC~ 207 (507)
. +..|+. .++++||+.||.+++...+.
T Consensus 104 ~~g~~f~~~~~g~~~C~~c~~~~~~~~~~ 132 (169)
T 2rgt_A 104 ATGDEFYLMEDSRLVCKADYETAKQGGSG 132 (169)
T ss_dssp CTTCEEEECTTSCEEEHHHHHHHHHCC--
T ss_pred CCCCceEEccCCeEECHHHHHHHhhccCC
Confidence 8 456654 58899999999998876553
No 45
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=1e-12 Score=108.22 Aligned_cols=67 Identities=18% Similarity=0.379 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceE--eeCCcccchhhhhhhccccc
Q 010581 140 PRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFS--LSGKDPYHKSCFKELTHPKC 206 (507)
Q Consensus 140 ~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~--~~dg~pYCk~CY~k~f~pkC 206 (507)
....++|.+|++.|..++.+.++++.||+.||+|..|+++|....|+ .+++++||+.||.++|.+-+
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 34578999999999878899999999999999999999999998888 46999999999999887644
No 46
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.31 E-value=7.9e-14 Score=130.97 Aligned_cols=98 Identities=18% Similarity=0.353 Sum_probs=81.7
Q ss_pred cCCCccccc--chHHhHHHHhcccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCc-eEEecCccccCCCcccCCCCCCC
Q 010581 104 PNGQRWRSN--TDEDYAWALQDSQLNPSFPPYDPSHYYPRSYKVCGGCNCDIGYGN-YLGCMGTYFHPNCFRCRSCGYPI 180 (507)
Q Consensus 104 ~~~~~wh~e--~ce~c~raLq~~l~~~~~~pYC~~~y~~~~~~~C~~C~k~I~~g~-~l~algk~wHp~CF~C~~C~~~L 180 (507)
..+..||.+ .|..|.++|....+...+.|||..||...+.++|.+|+++|..++ ++.++++.||+.||+|..|+++|
T Consensus 78 a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L 157 (182)
T 2jtn_A 78 ALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQL 157 (182)
T ss_dssp ETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCC
T ss_pred ecCCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCC
Confidence 456789988 899999988544333445999999999899999999999997544 56899999999999999999999
Q ss_pred C-CCceEe-eCCcccchhhhhhh
Q 010581 181 T-EHEFSL-SGKDPYHKSCFKEL 201 (507)
Q Consensus 181 ~-~~~F~~-~dg~pYCk~CY~k~ 201 (507)
. +..|+. .++++||+.||.++
T Consensus 158 ~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 158 ATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CTTCEEEECTTSCEECHHHHHHH
T ss_pred CCCCceEEccCCEEECHHHHHHh
Confidence 8 456654 58999999999864
No 47
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=116.11 Aligned_cols=64 Identities=23% Similarity=0.439 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCC--CCceEeeCCcccchhhhhhhcc
Q 010581 140 PRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPIT--EHEFSLSGKDPYHKSCFKELTH 203 (507)
Q Consensus 140 ~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~--~~~F~~~dg~pYCk~CY~k~f~ 203 (507)
..+.++|++|+++|....++.++++.||+.||+|..|+++|. +..|+.+++++||+.||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 346789999999998666799999999999999999999997 4689999999999999999885
No 48
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=102.00 Aligned_cols=59 Identities=22% Similarity=0.450 Sum_probs=54.8
Q ss_pred CCCCCCCCCccCC-CceEEecCcccc--CCCcccCCCCCCCCCCceEeeCCcccc-hhhhhhh
Q 010581 143 YKVCGGCNCDIGY-GNYLGCMGTYFH--PNCFRCRSCGYPITEHEFSLSGKDPYH-KSCFKEL 201 (507)
Q Consensus 143 ~~~C~~C~k~I~~-g~~l~algk~wH--p~CF~C~~C~~~L~~~~F~~~dg~pYC-k~CY~k~ 201 (507)
+++|++|+++|.. ++.+.++++.|| ++||+|..|+++|.+..|+.+++++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 5789999999976 489999999999 999999999999999999999999999 8999874
No 49
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=2.2e-12 Score=105.31 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=60.5
Q ss_pred CCcccchhhhhhhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCcccc
Q 010581 189 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 268 (507)
Q Consensus 189 dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C 268 (507)
++.+||+.||.++|+++|..|+++|.+. .|.+... .||.+||+|..|++.|..+..|+...||++||
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C 67 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP---FMVAGEF----------KYHPECFACMSCKVIIEDGDAYALVQHATLYC 67 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSC---CBCCTTC----------CBCTTSCBCTTTCCBCCTTSCEEECSSSCEEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCce---EEEECCc----------eeccccCCccCCCCccCCCCcEEEeeCCEEEC
Confidence 4689999999999999999999999953 3444322 24999999999999765455544358899999
Q ss_pred chhhhhhcc
Q 010581 269 LECMESAIM 277 (507)
Q Consensus 269 ~~C~~sav~ 277 (507)
..|+..+..
T Consensus 68 ~~c~~~~~~ 76 (81)
T 1x6a_A 68 GKCHNEVVS 76 (81)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999987765
No 50
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.2e-12 Score=104.20 Aligned_cols=73 Identities=19% Similarity=0.500 Sum_probs=57.9
Q ss_pred CCcccchhhhhhhccccccccCCCcCC---CCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCc
Q 010581 189 GKDPYHKSCFKELTHPKCEVCHQYIPT---NGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGR 265 (507)
Q Consensus 189 dg~pYCk~CY~k~f~pkC~~C~k~I~~---~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr 265 (507)
+++|||+.||.++|+++|..|+++|.+ .. ..+.+... .||..||+|..|++.|. +..|...||+
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~--~~~f~~~~~~ 67 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGS-SVVAYEGQ----------SWHDYCFHCKKCSVNLA--NKRFVFHQEQ 67 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCC-CEEEETTE----------EEETTTCBCSSSCCBCT--TSCCCEETTE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCc-eeEEECcc----------eeCcccCEehhcCCCCC--CCccEeECCE
Confidence 578999999999999999999999996 21 24444432 24999999999999664 4445577899
Q ss_pred cccchhhhh
Q 010581 266 SLCLECMES 274 (507)
Q Consensus 266 ~~C~~C~~s 274 (507)
+||..||..
T Consensus 68 ~yC~~cy~~ 76 (77)
T 2egq_A 68 VYCPDCAKK 76 (77)
T ss_dssp ECCHHHHHH
T ss_pred EEChHHhcc
Confidence 999999865
No 51
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.7e-12 Score=103.52 Aligned_cols=76 Identities=26% Similarity=0.566 Sum_probs=59.3
Q ss_pred CCcccchhhhhhhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCcccc
Q 010581 189 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 268 (507)
Q Consensus 189 dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C 268 (507)
+|+|||+.||.++|+++|..|+++|.+.. ..+.+... .||..||+|..|++.|. +..|...+|++||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~--~~~f~~~~~~~~C 67 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDS-RELFYEDR----------HFHEGCFRCCRCQRSLA--DEPFTCQDSELLC 67 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSC-CBCCCSSC----------CCBTTTSBCTTTCCBCS--SCCEEEETTEEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccCc-EEEEeCCc----------cccccCCeecCCCCccC--CCccEeeCCEEEC
Confidence 58899999999999999999999999432 13333322 24999999999999654 4456677899999
Q ss_pred chhhhhhcc
Q 010581 269 LECMESAIM 277 (507)
Q Consensus 269 ~~C~~sav~ 277 (507)
..|+..+..
T Consensus 68 ~~c~~~~~~ 76 (82)
T 2ehe_A 68 NDCYCSAFS 76 (82)
T ss_dssp TTTSSCCGG
T ss_pred HHHHhhhcC
Confidence 999976543
No 52
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.21 E-value=6.8e-12 Score=101.97 Aligned_cols=74 Identities=18% Similarity=0.490 Sum_probs=59.9
Q ss_pred CCcccchhhhhhhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCcccc
Q 010581 189 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 268 (507)
Q Consensus 189 dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C 268 (507)
+|+|||+.||.++|+++|..|+++|.+. .|.+... .||.+||+|..|++.|. +..|...||++||
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC 65 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG---GVTYRDQ----------PWHRECLVCTGCQTPLA--GQQFTSRDEDPYC 65 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC---CEESSSS----------EECTTTCBCSSSCCBCT--TCCEEECSSSEEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc---EEEECCc----------hhhhhhCCcccCCCcCC--CCeeEeECCEEEC
Confidence 5899999999999999999999999874 3544432 24999999999999663 3345667899999
Q ss_pred chhhhhhcc
Q 010581 269 LECMESAIM 277 (507)
Q Consensus 269 ~~C~~sav~ 277 (507)
..||..+..
T Consensus 66 ~~cy~~~f~ 74 (80)
T 2cuq_A 66 VACFGELFA 74 (80)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999987654
No 53
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.17 E-value=1.4e-11 Score=100.02 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=59.5
Q ss_pred CCcccchhhhhhhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCcccc
Q 010581 189 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 268 (507)
Q Consensus 189 dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C 268 (507)
++++||+.||.++|+++|..|+++|.+. .|.+... .||..||+|..|++.|.. .. |...||++||
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~~-~~-~~~~~~~~yC 65 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN---YLSAMDT----------VWHPECFVCGDCFTSFST-GS-FFELDGRPFC 65 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS---CEEETTE----------EECTTTCBCSSSCCBSCS-SC-CEESSSCEEC
T ss_pred CCCccchhHHhhhcCCccccCCCeecce---eEEECCC----------eEecCcCChhhCCCCCCC-Cc-EEeECCEEEC
Confidence 5789999999999999999999999974 3555432 249999999999996643 34 5567899999
Q ss_pred chhhhhhcc
Q 010581 269 LECMESAIM 277 (507)
Q Consensus 269 ~~C~~sav~ 277 (507)
..||..+..
T Consensus 66 ~~~y~~~f~ 74 (80)
T 1x3h_A 66 ELHYHHRRG 74 (80)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 999987654
No 54
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.16 E-value=1.8e-11 Score=99.90 Aligned_cols=76 Identities=21% Similarity=0.453 Sum_probs=59.6
Q ss_pred CCcccchhhhhhhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCcccc
Q 010581 189 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 268 (507)
Q Consensus 189 dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C 268 (507)
++.+||+.||.++|+++|..|+++|.+.+ ..|.+... .||..||+|..|++.|. +..|...+|++||
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC 67 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-QNVEYKGT----------VWHKDCFTCSNCKQVIG--TGSFFPKGEDFYC 67 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-CEEECSSC----------EEETTTCCCSSSCCCCT--TSCEEEETTEEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-eEEEECcc----------ccccccCchhhCCCccC--CCccEeeCCEEEC
Confidence 47899999999999999999999998642 13444322 24999999999999654 3345567899999
Q ss_pred chhhhhhcc
Q 010581 269 LECMESAIM 277 (507)
Q Consensus 269 ~~C~~sav~ 277 (507)
..||..+..
T Consensus 68 ~~cy~~~f~ 76 (82)
T 1x63_A 68 VTCHETKFA 76 (82)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhC
Confidence 999987654
No 55
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.16 E-value=2.6e-11 Score=99.00 Aligned_cols=76 Identities=14% Similarity=0.288 Sum_probs=59.8
Q ss_pred CCcccchhhhhhhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCcccc
Q 010581 189 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 268 (507)
Q Consensus 189 dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C 268 (507)
++.+||+.||.++|+++|..|+++|.+. .|.+... .||.+||+|..|++.|.. +.++..+++.+||
T Consensus 1 ~~~~yC~~dy~~~~~~~C~~C~~~I~~~---~v~a~~~----------~wH~~CF~C~~C~~~L~~-~~~~~~~~~~~~C 66 (81)
T 1v6g_A 1 GSSGSSGLDYQRLYGTRCFSCDQFIEGE---VVSALGK----------TYHPDCFVCAVCRLPFPP-GDRVTFNGKECMC 66 (81)
T ss_dssp CCCCCCCSCGGGSCCCBCTTTCCBCCSC---CEEETTE----------EECTTTSSCSSSCCCCCS-SSCEEEETTEEEE
T ss_pred CCCCcchHHHHhHhCCcCccccCEeccc---eEEECCc----------eeCccCCccccCCCCCCC-CCEEEeCCCCEEC
Confidence 3578999999999999999999999963 4555432 249999999999997653 4556666656799
Q ss_pred chhhhhhccC
Q 010581 269 LECMESAIMD 278 (507)
Q Consensus 269 ~~C~~sav~d 278 (507)
..|+..+...
T Consensus 67 ~~C~~~~~~~ 76 (81)
T 1v6g_A 67 QKCSLPVSVS 76 (81)
T ss_dssp HHHHSCCSSC
T ss_pred hhhhcccCCC
Confidence 9999876553
No 56
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.12 E-value=3.8e-11 Score=97.98 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=57.8
Q ss_pred CCcccchhhhhhhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEec-CCccc
Q 010581 189 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLE-DGRSL 267 (507)
Q Consensus 189 dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~-dGr~~ 267 (507)
+++|||+.||. ++.++|..|+++|.+. .|.+... . ||+.||+|..|++.|. +..|... ||++|
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~---~~~a~~~-----~-----~H~~CF~C~~C~~~L~--~~~f~~~~~g~~y 65 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDR---ILRAMGK-----A-----YHPGCFTCVVCHRGLD--GIPFTVDATSQIH 65 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSC---CEEETTE-----E-----ECTTTCBCSSSCCBCT--TSCEECCTTCCCE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecce---eEEECCc-----c-----ccHHhcCcccCCCccC--CCeeEECCCCEEE
Confidence 68999999999 7999999999999863 4555432 2 4999999999999654 4445554 79999
Q ss_pred cchhhhhhcc
Q 010581 268 CLECMESAIM 277 (507)
Q Consensus 268 C~~C~~sav~ 277 (507)
|..||..+..
T Consensus 66 C~~cy~~~f~ 75 (81)
T 2dlo_A 66 CIEDFHRKFA 75 (81)
T ss_dssp EHHHHHHHTT
T ss_pred CHHHHHHHhc
Confidence 9999977643
No 57
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.90 E-value=5.5e-11 Score=100.63 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=62.7
Q ss_pred cCCCccccc--chHHhHHHHhcc-cCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC-ceEEecCccccCCCcccCCCC
Q 010581 104 PNGQRWRSN--TDEDYAWALQDS-QLNPSFPPYDPSHYYPRSYKVCGGCNCDIGYG-NYLGCMGTYFHPNCFRCRSCG 177 (507)
Q Consensus 104 ~~~~~wh~e--~ce~c~raLq~~-l~~~~~~pYC~~~y~~~~~~~C~~C~k~I~~g-~~l~algk~wHp~CF~C~~C~ 177 (507)
..+..||.+ .|..|.++|... +....+.|||..+|...+.++|.+|+++|..+ .++.++++.||++||+|..|+
T Consensus 24 a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 24 YKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred ECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 456789988 899999988543 33333489999999999999999999999755 689999999999999999996
No 58
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.73 E-value=7.1e-09 Score=83.19 Aligned_cols=64 Identities=19% Similarity=0.367 Sum_probs=49.3
Q ss_pred hhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 200 ELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 200 k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
.+|+++|..|+++|.+. .|.+... .||++||+|..|++.|..+ ..|.+.+|++||..|+..+..
T Consensus 2 s~~~~~C~~C~~~I~~~---~v~a~~~----------~wH~~CF~C~~C~~~L~~~-~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGR---VLEAGEK----------HYHPSCALCVRCGQMFAEG-EEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CCSCCSCSSSCCCCSSC---CBCCSSC----------CBCTTTSCCSSSCCCCCSS-CCCEEETTEEECTTHHHHTSS
T ss_pred CcCcCCcccCCCEecCe---eEEeCCC----------CCCCCcCEeCCCCCCCCCC-CeeEeeCCEEEChHHChHhhc
Confidence 35899999999999974 3444332 2499999999999966434 446667899999999988765
No 59
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.57 E-value=4.4e-08 Score=81.41 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=52.3
Q ss_pred cchhhhhhhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhh
Q 010581 193 YHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECM 272 (507)
Q Consensus 193 YCk~CY~k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~ 272 (507)
.+...+...+.++|..|+++|.+. .|.+... . ||+.||+|..|++.|. +..|...||++||..||
T Consensus 15 ~~~~~~~~~~~~~C~~C~~~I~~~---~v~a~~~-----~-----~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy 79 (90)
T 2dar_A 15 RAEHIPAGKRTPMCAHCNQVIRGP---FLVALGK-----S-----WHPEEFNCAHCKNTMA--YIGFVEEKGALYCELCY 79 (90)
T ss_dssp CCEEECTTTCCCBBSSSCCBCCSC---EEEETTE-----E-----ECTTTCBCSSSCCBCS--SSCBEESSSCEECHHHH
T ss_pred hcccCCCCCCCCCCccCCCEecce---EEEECCc-----c-----ccccCCccCCCCCCCC--CCEeEeECCEEECHHHH
Confidence 344446677899999999999753 4544432 2 4999999999999654 33456788999999999
Q ss_pred hhhcc
Q 010581 273 ESAIM 277 (507)
Q Consensus 273 ~sav~ 277 (507)
..+..
T Consensus 80 ~~~f~ 84 (90)
T 2dar_A 80 EKFFA 84 (90)
T ss_dssp HHHTS
T ss_pred HHHcC
Confidence 87654
No 60
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.56 E-value=2.9e-08 Score=77.67 Aligned_cols=61 Identities=20% Similarity=0.424 Sum_probs=45.6
Q ss_pred ccccccccCCCcCCCCcceEEeeecCccccccCCCccC--CCCcccCCCCCccccCCceeEecCCcccc-chhhhhh
Q 010581 202 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEH--DHTSRCCSCERLESWNTRYYSLEDGRSLC-LECMESA 275 (507)
Q Consensus 202 f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H--~~CF~C~~C~r~l~~g~~~~~l~dGr~~C-~~C~~sa 275 (507)
|+++|..|+++|.+.. ..|.+... +|| ++||+|..|++.| .+..|...||++|| ..|+..+
T Consensus 1 fa~~C~~C~~~I~~~~-~~v~a~~~----------~wH~~~~CF~C~~C~~~L--~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEV-QRVTYNNF----------SWHASTECFLCSCCSKCL--IGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTS-CEEEETTE----------EEETTTTTSBCTTTCCBC--TTSCCEEETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCc-eEEEECCC----------ccCCCCCCEECCCCCCcC--CCCceEEECCEEecCHHHhhhh
Confidence 5789999999999632 24555432 249 9999999999965 44446677899999 8998765
No 61
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.54 E-value=5.2e-08 Score=77.15 Aligned_cols=65 Identities=20% Similarity=0.461 Sum_probs=48.6
Q ss_pred hhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 200 ELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 200 k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
++|+++|..|+++|.+.+ ..|.+... . ||.+||+|..|++.|. +..|...||++||..||.....
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~-----~-----~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGT-RKMEYKGS-----S-----WHETCFICHRCQQPIG--TKSFIPKDNQNFCVPCYEKQHA 66 (72)
T ss_dssp CSCCCCBSSSCCCCCSSS-CEEEETTE-----E-----EETTTTCCSSSCCCCC--SSSEEEETTEEEEHHHHHHHTS
T ss_pred CccCCCCccCCCcccCCc-eEEEECcC-----e-----ecccCCcccccCCccC--CCccCccCCeEECHHHHhHHhC
Confidence 368999999999999642 13444332 2 4999999999999654 3345667899999999987643
No 62
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.54 E-value=5.6e-08 Score=77.16 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=47.8
Q ss_pred hccccccccCCCcCCC-CcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhc
Q 010581 201 LTHPKCEVCHQYIPTN-GAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAI 276 (507)
Q Consensus 201 ~f~pkC~~C~k~I~~~-~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav 276 (507)
.+.++|..|+++|.+. ....|.+... .||.+||+|..|++.| .+..|...||++||..|+..+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~----------~wH~~CF~C~~C~~~L--~~~~f~~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEER----------QWHNDCFNCKKCSLSL--VGRGFLTERDDILCPDCGKDIS 67 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSC----------EECTTTCBCSSSCCBC--TTSCCEECSSSEECHHHHHTCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCc----------ccCcccCEeccCCCcC--CCCccEeECCEEEChhHcCccc
Confidence 4689999999999961 1123444332 2499999999999965 4555677889999999997654
No 63
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.53 E-value=5.2e-08 Score=76.82 Aligned_cols=62 Identities=23% Similarity=0.451 Sum_probs=47.4
Q ss_pred hccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 201 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 201 ~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
++.++|..|+++|.+. .|.+.. +. ||..||+|..|++.| .+..|...||++||..||..+..
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~-----~~-----~H~~CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~f~ 64 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTG---GVTYRE-----QP-----WHKECFVCTACRKQL--SGQRFTARDDFAYCLNCFCDLYA 64 (70)
T ss_dssp CCCCBCSSSCCBCCSS---EEESSS-----SE-----EETTTSBCSSSCCBC--TTSCCEESSSSEECHHHHHHHTC
T ss_pred CCCCCCcccCCeeccc---eEEECc-----cc-----cCCCCCccCCCCCcC--CcCceEeeCCeEECHHHHHHHhc
Confidence 5789999999999864 344432 22 499999999999965 34445677899999999987644
No 64
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.53 E-value=7.3e-08 Score=76.10 Aligned_cols=61 Identities=21% Similarity=0.435 Sum_probs=47.2
Q ss_pred ccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 202 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 202 f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
+.++|..|+++|.+. .|.+... . ||++||+|..|++.|. +..|...||++||..||.....
T Consensus 4 ~~~~C~~C~~~I~~~---~~~a~~~-----~-----~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR---VIKAMNN-----S-----WHPECFRCDLCQEVLA--DIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp CSSBCSSSCCBCCSC---CEEETTE-----E-----ECTTTSBCSSSCCBCS--SSCCEEETTEEECHHHHHHHHC
T ss_pred CCCcCccCCCEecce---EEEECcc-----c-----ccccCCEeCCCCCcCC--CCccEeECCeEECHHHhhhhcC
Confidence 578999999999864 3555432 2 3999999999999654 4456678899999999987755
No 65
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.52 E-value=5e-08 Score=78.45 Aligned_cols=65 Identities=14% Similarity=0.290 Sum_probs=48.7
Q ss_pred hhccccccccCCCcCC--CCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 200 ELTHPKCEVCHQYIPT--NGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 200 k~f~pkC~~C~k~I~~--~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
++|+++|..|+++|.+ .. ..|.+... .||.+||+|..|++.|. +..|...||++||..||.....
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~-~~~~a~~~----------~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~f~ 68 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGA-KFICFQDS----------QWHSECFNCGKCSVSLV--GKGFLTQNKEIFCQKCGSGMDT 68 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTC-CEEEETTE----------EEEGGGCBCTTTCCBCS--SSCEEEETTEEEETTTTCCCCC
T ss_pred CccCCCCccCCCcccCCCCc-eeEEECCc----------ccCcccCChhhCCCcCC--CCceEeECCEEECHHHhhhhhC
Confidence 4689999999999996 22 24544432 24999999999999654 4445667899999999976643
No 66
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.52 E-value=6.5e-08 Score=76.16 Aligned_cols=62 Identities=16% Similarity=0.439 Sum_probs=47.6
Q ss_pred hccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 201 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 201 ~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
++.++|..|+++|.++ .|.+... . ||..||+|..|++.|. +..|...||++||..||..+..
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~-----~-----~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG---GITYQDQ-----P-----WHADCFVCVTCSKKLA--GQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp CCCCCCSSSCCCCCTT---CEEETTE-----E-----ECTTTTBCTTTCCBCT--TSCEEECSSCEEEHHHHHHHHT
T ss_pred CCcCCCcccCCEeCcc---eEEECcc-----c-----cccCcCEECCCCCCCC--CCccEeECCEEECHHHhHHHhc
Confidence 4789999999999864 3555432 2 4999999999999654 4446677899999999977643
No 67
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.52 E-value=7e-08 Score=76.51 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=47.7
Q ss_pred hccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 201 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 201 ~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
++.++|..|+++|.+.. ..|.+... .||..||+|..|++.| .+..|...||++||..||..+..
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDG-AGVVALDR----------VFHVGCFVCSTCRAQL--RGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSS-CCEECSSS----------EECTTTCBCSSSCCBC--TTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCc-eEEEECCC----------eEcccCCcccccCCcC--CcCcCEeeCCeEECHHHHHHHHc
Confidence 47899999999998742 13444332 2499999999999966 34445567799999999987653
No 68
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.52 E-value=3.3e-08 Score=77.23 Aligned_cols=62 Identities=16% Similarity=0.286 Sum_probs=46.8
Q ss_pred hhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhc
Q 010581 200 ELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAI 276 (507)
Q Consensus 200 k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav 276 (507)
+++.++|..|+++|.+. .+.+.. + .||..||+|..|++.+. +..|...||++||..||..+.
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~-----~-----~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 2 SMGVPICGACRRPIEGR---VVNAMG-----K-----QWHVEHFVCAKCEKPFL--GHRHYERKGLAYCETHYNQLF 63 (66)
T ss_dssp CCCCCEETTTTEECCSC---EECCTT-----S-----BEETTTCBCTTTCCBCS--SSCCEEETTEEECHHHHHHHC
T ss_pred CcCCCCCcccCCEecce---EEEECc-----c-----ccccCcCEECCCCCCCC--CCceEeECCcEECHHHHHHHh
Confidence 35789999999999853 344432 2 24999999999999654 444567789999999997654
No 69
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.51 E-value=5.8e-08 Score=85.44 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=49.9
Q ss_pred hhhhccc--cccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhh
Q 010581 198 FKELTHP--KCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESA 275 (507)
Q Consensus 198 Y~k~f~p--kC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sa 275 (507)
|.++|++ +|..|+++|.+.+. .+.+... .||..||+|..|++.|..+..| ...+|++||..||..+
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~-~~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEM-TMRVKDK----------VYHLECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEW 68 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCC-CCCCSSC----------CCCTTTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCce-EEEECCc----------ccccccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHH
Confidence 5678988 99999999986421 2333322 2499999999999977545554 5567999999999765
Q ss_pred c
Q 010581 276 I 276 (507)
Q Consensus 276 v 276 (507)
.
T Consensus 69 ~ 69 (123)
T 2l3k_A 69 T 69 (123)
T ss_dssp H
T ss_pred h
Confidence 3
No 70
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.48 E-value=6.8e-08 Score=76.03 Aligned_cols=65 Identities=15% Similarity=0.298 Sum_probs=47.9
Q ss_pred hhhhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhh
Q 010581 198 FKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESA 275 (507)
Q Consensus 198 Y~k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sa 275 (507)
|..++.++|..|+++|.+.+ ..+.+.. +. ||..||+|..|++.+..+ . |...||++||..||..+
T Consensus 6 y~~~~~~~C~~C~~~i~~~e-~~~~~~~-----~~-----~H~~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAE-KIVNSNG-----EL-----YHEQCFVCAQCFQQFPEG-L-FYEFEGRKYCEHDFQML 70 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTC-EEEEETT-----EE-----EETTTSSCTTTCCCCGGG-C-CEEETTEEECHHHHHHH
T ss_pred ccCcCCccchhcCccccCCc-eEEEeCc-----Ce-----eCcCCCcccCCCCCCCCC-C-eEeECCeEeCHHHHHHh
Confidence 34468899999999999753 1233332 22 499999999999966533 4 45677999999999765
No 71
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.44 E-value=1.4e-07 Score=74.57 Aligned_cols=65 Identities=23% Similarity=0.525 Sum_probs=47.7
Q ss_pred hhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 200 ELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 200 k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
++|.++|..|+++|.... ..+.+.. + .||.+||+|..|++.|. +..|...||++||..||.....
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~-----~-----~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGS-RKLEYGG-----Q-----TWHEHCFLCSGCEQPLG--SRSFVPDKGAHYCVPCYENKFA 66 (72)
T ss_dssp CCCCCBCSSSCCBCCSSS-CEECSTT-----C-----CEETTTCBCTTTCCBTT--TSCEEEETTEEEEHHHHHHHTS
T ss_pred CccCCCCccCCCccccCc-cEEEECc-----c-----ccCcccCeECCCCCcCC--CCccCCcCCeEECHHHHHHHcc
Confidence 368899999999999632 1333332 2 24999999999999654 3346677899999999977643
No 72
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.42 E-value=1.5e-07 Score=76.59 Aligned_cols=61 Identities=20% Similarity=0.418 Sum_probs=46.5
Q ss_pred hccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 201 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 201 ~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
++.++|..|+++|.+. .|.+... .||+.||+|..|++.|. +.+| ..||++||..||..+..
T Consensus 13 ~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~--~~~f-~~~g~~yC~~cy~~~f~ 73 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQ---PLIFKND----------PYHPDHFNCANCGKELT--ADAR-ELKGELYCLPCHDKMGV 73 (79)
T ss_dssp CCCCBCTTTCCBCCSC---CCCCSSS----------CCCTTTSBCSSSCCBCC--TTCE-EETTEEECHHHHHTTSC
T ss_pred cCCCCCccCCCEecce---EEEECcc----------eeCCCCCEeCCCCCccC--CCCE-eECCEEeCHHHHHHhCC
Confidence 4678999999999954 2444322 24999999999999654 4456 77899999999987643
No 73
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.38 E-value=1.7e-07 Score=82.93 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=47.1
Q ss_pred hhccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCcccc-CCceeEecCCccccchhhhhh
Q 010581 200 ELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESW-NTRYYSLEDGRSLCLECMESA 275 (507)
Q Consensus 200 k~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~-g~~~~~l~dGr~~C~~C~~sa 275 (507)
..+.++|..|+++|.+.. .+.+... .||..||+|..|++.|.. +.. |...||++||..||..+
T Consensus 58 ~~~~~~C~~C~~~I~~~~--~v~a~~~----------~wH~~CF~C~~C~~~L~~~g~~-f~~~dg~~yC~~cy~~~ 121 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRF--LLYAMDS----------YWHSRCLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRL 121 (123)
T ss_dssp CSSCSBBSSSSSBCCSSS--EEEETTE----------EEETTTSBCTTTCCBGGGTTCC-CBCSSSCCBCHHHHHHH
T ss_pred CccCCcCcCCCCCcCCcE--EEEeCCc----------EEcccccCcCcCCCcccccCCc-eEEECCEEeCHHHhhhh
Confidence 346789999999998742 3555432 249999999999996642 345 45678999999999764
No 74
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.38 E-value=2.1e-07 Score=74.62 Aligned_cols=63 Identities=16% Similarity=0.319 Sum_probs=47.0
Q ss_pred hccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccc-hhhhhhcc
Q 010581 201 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCL-ECMESAIM 277 (507)
Q Consensus 201 ~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~-~C~~sav~ 277 (507)
.+.++|..|+++|.... .|.+... . ||..||+|..|++.|. +..|...||++||. .||..+..
T Consensus 7 ~~~~~C~~C~~~I~~~~--~v~a~~~-----~-----~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~cy~~~f~ 70 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAE--KVSSLGK-----D-----WHKFCLKCERCSKTLT--PGGHAEHDGKPFCHKPCYATLFG 70 (76)
T ss_dssp CCCCBCTTTCCBCCTTT--EEEETTE-----E-----EETTTCBCSSSCCBCC--TTSCEEETTEEECTTTHHHHHSC
T ss_pred CCCCCCcCCCCEeECCe--EEEECCe-----E-----eeCCCCCCCCCCCccC--CCceEeECCEEecchHHHHHhcc
Confidence 47899999999999543 3544332 2 4999999999999664 33345678999999 79977643
No 75
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.36 E-value=1.9e-07 Score=74.83 Aligned_cols=63 Identities=16% Similarity=0.297 Sum_probs=46.6
Q ss_pred hccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhc
Q 010581 201 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAI 276 (507)
Q Consensus 201 ~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav 276 (507)
.+.++|..|+++|.+.+ ..+.+... . ||..||+|..|++.+..+ . |...||++||..||..+.
T Consensus 9 ~~~~~C~~C~~~I~~~~-~~~~a~~~-----~-----~H~~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~~y~~~f 71 (77)
T 1g47_A 9 LASATCERCKGGFAPAE-KIVNSNGE-----L-----YHEQCFVCAQCFQQFPEG-L-FYEFEGRKYCEHDFQMLF 71 (77)
T ss_dssp CCCCBCSSSCCBCCSTT-TCEEETTE-----E-----ECTTTCCCTTTCCCCGGG-C-SEEETTEEECHHHHHHHC
T ss_pred CCCCCchhcCCccCCCc-eEEEeCcc-----E-----eccccCeECCCCCCCCCC-C-eEeECCeEeCHHHHHHHh
Confidence 46889999999998532 13444332 2 499999999999966533 3 557789999999997764
No 76
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.29 E-value=2.1e-07 Score=75.40 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=46.2
Q ss_pred ccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 202 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 202 f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
..++|..|+++|.+. .|.+... . ||..||+|..|++.|. +.-|...|+++||..||..+..
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~-~---------~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDR-H---------RHPECYVCTDCGTNLK--QKGHFFVEDQIYCEKHARERVS 74 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSC-E---------ECTTTTSCSSSCCCHH--HHCCEESSSCEECHHHHHHHHS
T ss_pred CCCccccCCCCccCc---EEEECcc-e---------eCcCcCeeCCCCCCCC--CCCeEeECCEEECHHHHHHHhC
Confidence 468999999999974 4555432 2 4999999999999664 3334567899999999987654
No 77
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.28 E-value=4.9e-07 Score=73.96 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=44.5
Q ss_pred ccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeE-ecCCccccchhhhhhcc
Q 010581 202 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYS-LEDGRSLCLECMESAIM 277 (507)
Q Consensus 202 f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~-l~dGr~~C~~C~~sav~ 277 (507)
..++|..|+++|.... .+.+.. + .||.+||+|..|++.|.. ..|+. ..||++||..||..+..
T Consensus 14 ~~~~C~~C~~~I~~~e--~v~a~~-----~-----~wH~~CF~C~~C~~~L~~-~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 14 AGDLCALCGEHLYVLE--RLCVNG-----H-----FFHRSCFRCHTCEATLWP-GGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp SSCBCSSSCCBCCTTT--BCCBTT-----B-----CCBTTTCBCSSSCCBCCT-TSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCCcccCCCcccce--EEEECC-----C-----eeCCCcCEEcCCCCCcCC-CceeEeCcCCEEEChHHHHhhhc
Confidence 3578999999997543 233322 1 249999999999996542 23332 47899999999977654
No 78
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.27 E-value=6.6e-07 Score=73.00 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=45.6
Q ss_pred ccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 202 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 202 f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
..++|..|+++|.... .|.+... . ||++||+|..|++.|. +.| ...||++||..||..+..
T Consensus 14 ~~~~C~~C~~~I~~~~--~v~a~~~-~---------wH~~CF~C~~C~~~L~--~~~-~~~~g~~yC~~~y~~~fg 74 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQ--SLLALDK-Q---------WHVSCFKCQTCSVILT--GEY-ISKDGVPYCESDYHAQFG 74 (80)
T ss_dssp SCSCCTTTCCCCSSSC--CEEETTE-E---------ECTTTCBCSSSCCBCS--SCC-EEETTEEECTTHHHHHTT
T ss_pred CCCCCcCcCCeeCCCe--EEEECCc-c---------cccccCCcCcCCCCcC--CCe-EEECCEEECHHHHHHHcC
Confidence 3578999999998532 3444332 2 4999999999999654 454 567899999999987654
No 79
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.26 E-value=4.2e-07 Score=73.80 Aligned_cols=62 Identities=15% Similarity=0.305 Sum_probs=44.8
Q ss_pred ccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 202 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 202 f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
..++|..|+++|.... .+.+.. +. ||.+||+|..|++.|. +.-|...|+++||..||..+..
T Consensus 6 ~~~~C~~C~~~I~~~~--~~~a~~-----~~-----~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE--EVQCDG-----RS-----FHRCCFLCMVCRKNLD--STTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp --CBCSSSCCBCSSTT--EEEETT-----EE-----EESSSEECSSSCCEEC--SSCCEEETTEEECSHHHHHHCC
T ss_pred CCCcCcCcCccccCce--eEEeCC-----cc-----cccccCccCCCCCCCC--CCCeEeeCCEEECHHHHHHHhC
Confidence 5689999999997543 344432 22 4999999999999664 3335566899999999977644
No 80
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.26 E-value=5.6e-07 Score=74.53 Aligned_cols=61 Identities=18% Similarity=0.429 Sum_probs=45.5
Q ss_pred ccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010581 202 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 277 (507)
Q Consensus 202 f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~ 277 (507)
..++|..|+++|.+. .|.+... . ||.+||+|..|++.|. +..|+ ..||++||..||..+..
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~-~---------~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDK-Y---------RHPECFVCADCNLNLK-QKGYF-FVEGELYCETHARARTS 84 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSC-E---------ECTTTCCCSSSCCCTT-TSCCE-EETTEEECHHHHHHHSS
T ss_pred cCCCcccCCCEeccc---EEEECCc-e---------ECccCCEecCCCCCCC-CCCeE-eECCEEECHHHHHHHhC
Confidence 468899999999974 3444331 2 4999999999999664 23444 55899999999977654
No 81
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.22 E-value=5.7e-07 Score=74.75 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=47.0
Q ss_pred ccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhccC
Q 010581 202 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMD 278 (507)
Q Consensus 202 f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~d 278 (507)
..++|..|+++|.+.. .+.+.. +. ||..||+|..|++.|..+ . |...||++||..||..+...
T Consensus 14 ~~~~C~~C~~~I~~~~--~v~a~~-----~~-----~H~~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~~y~~~f~~ 76 (91)
T 2d8y_A 14 ARETCVECQKTVYPME--RLLANQ-----QV-----FHISCFRCSYCNNKLSLG-T-YASLHGRIYCKPHFNQLFKS 76 (91)
T ss_dssp SSCBCTTTCCBCCTTS--EEECSS-----SE-----EETTTCBCTTTCCBCCTT-T-CCCSSSCCCCHHHHHHHSCC
T ss_pred CCCcCccCCCccCCce--eEEECC-----CE-----ECCCCCeeCCCCCCCCCC-C-cEeECCEEECHHHHHHHhCC
Confidence 5789999999998643 344432 22 499999999999966432 3 55678999999999877553
No 82
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.18 E-value=7.9e-07 Score=71.28 Aligned_cols=60 Identities=17% Similarity=0.370 Sum_probs=44.1
Q ss_pred ccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccc-hhhhhhcc
Q 010581 204 PKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCL-ECMESAIM 277 (507)
Q Consensus 204 pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~-~C~~sav~ 277 (507)
|+|..|+++|.... .+.+.. +. ||..||+|..|++.|..+ . |...||++||. .||.....
T Consensus 1 p~C~~C~~~I~~~~--~v~a~~-----~~-----~H~~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~~cy~~~f~ 61 (76)
T 1iml_A 1 PKCPKCDKEVYFAE--RVTSLG-----KD-----WHRPCLKCEKCGKTLTSG-G-HAEHEGKPYCNHPCYSAMFG 61 (76)
T ss_dssp CBCTTTSSBCCGGG--EEEETT-----EE-----EETTTCBCTTTCCBCCTT-T-EEEETTEEEETTTHHHHHSS
T ss_pred CcCCCCCCEEECce--EEEECC-----cc-----ccCCCCCccccCccCCCC-c-eECcCCeEeeCHHHHHHHhC
Confidence 68999999998532 344432 22 499999999999965432 4 55678999999 69987654
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.16 E-value=5.2e-07 Score=79.18 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=49.0
Q ss_pred hccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhccC
Q 010581 201 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMD 278 (507)
Q Consensus 201 ~f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~d 278 (507)
++.++|..|+++|.+.. .+.+... . ||+.||+|..|++.|...+..|...||++||..||......
T Consensus 3 ~~~~~C~~C~~~I~~~~--~~~a~~~-~---------wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~ 68 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF--LLYAMDS-Y---------WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN 68 (122)
T ss_dssp SCCCCBSSSSSCCCSSC--CEEETTE-E---------ECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC
T ss_pred CCCCCCcccCCEeCCcE--EEEECCc-e---------eHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC
Confidence 46799999999999753 3555432 2 49999999999996541123355778999999999887654
No 84
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.15 E-value=1.2e-06 Score=76.00 Aligned_cols=64 Identities=19% Similarity=0.159 Sum_probs=47.1
Q ss_pred cccccccCCCcCCCCcceEEeeecCccccccCCCccCCCCcccCCCCCcccc-CCceeEecCCccccchhhhhhccCC
Q 010581 203 HPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESW-NTRYYSLEDGRSLCLECMESAIMDT 279 (507)
Q Consensus 203 ~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~-g~~~~~l~dGr~~C~~C~~sav~dt 279 (507)
.++|..|+++|.+.. .+.+... .||+.||+|..|++.|.. |.. |...||++||..||..+....
T Consensus 3 ~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~~~g~~-~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRY--FLKAIDQ----------YWHEDCLSCDLCGCRLGEVGRR-LYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp CBCBSSSCSCBCSSE--EEECSSS----------EECTTTCCCSSSCSCCCCSSSC-CCCBTTBCCCHHHHHHHHTSC
T ss_pred CCCCcCCCCeeCCcE--EEEECch----------hHHHhcCcccccCCchhcCCCe-eEEECCeeechHHHHHHhCcc
Confidence 478999999998642 3444332 249999999999996642 234 456789999999998876543
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=96.80 E-value=0.00026 Score=47.75 Aligned_cols=29 Identities=21% Similarity=0.630 Sum_probs=26.7
Q ss_pred CCCCCCCCCccCCCceEEecCccccCCCc
Q 010581 143 YKVCGGCNCDIGYGNYLGCMGTYFHPNCF 171 (507)
Q Consensus 143 ~~~C~~C~k~I~~g~~l~algk~wHp~CF 171 (507)
.+.|+.|++.++..+.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 36899999999988999999999999998
No 86
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=75.09 E-value=4.7 Score=45.31 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHh-CCC-CCChhhhhhHHHHHHHHHhhc
Q 010581 386 TGAILAHELMHGWLRLK-GYR-NLNPEVEEGICQVLSYMWLES 426 (507)
Q Consensus 386 ~g~ilAHE~mHawlrl~-g~~-~l~~~vEEG~Cq~~a~~wl~~ 426 (507)
...++|||+.|-|.--. ... -=+..+-|||..++++++++.
T Consensus 259 ~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~ 301 (780)
T 1z5h_A 259 SANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDT 301 (780)
T ss_dssp HHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccccccHHHHHHHHHHHHHH
Confidence 45899999999996311 000 115788999999999998764
No 87
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=70.24 E-value=7.2 Score=44.74 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhcc
Q 010581 386 TGAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLESE 427 (507)
Q Consensus 386 ~g~ilAHE~mHawlrl~-g~~~-l~~~vEEG~Cq~~a~~wl~~~ 427 (507)
...++|||+.|-|.-=. .... =+..+-|||..++.++|.+..
T Consensus 295 i~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 338 (889)
T 3ebh_A 295 ILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEM 338 (889)
T ss_dssp HHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCeeeecccccceeeHHHHHHHHHHHHHHh
Confidence 45799999999995211 0011 146789999999988887653
No 88
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=69.19 E-value=10 Score=43.42 Aligned_cols=36 Identities=31% Similarity=0.607 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC-------ChhhhhhHHHHHHHHHhhc
Q 010581 386 TGAILAHELMHGWLRLKGYRNL-------NPEVEEGICQVLSYMWLES 426 (507)
Q Consensus 386 ~g~ilAHE~mHawlrl~g~~~l-------~~~vEEG~Cq~~a~~wl~~ 426 (507)
...|+|||++|-|. .|| +..+-|||..+++++|++.
T Consensus 316 ~~~viaHElAHqWF-----GnlVT~~~W~dlWLnEGFAty~e~~~~~~ 358 (909)
T 4fke_A 316 VVTVIAHELAHQWF-----GNLVTLAWWNDLWLNEGFASYVEYLGADH 358 (909)
T ss_dssp HHHHHHHHHHTTTB-----TTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh-----cCeecccccCcceeehHHHHHHHHHHHHh
Confidence 45789999999995 343 5678999999999999875
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=68.75 E-value=4 Score=34.40 Aligned_cols=96 Identities=18% Similarity=0.337 Sum_probs=60.0
Q ss_pred cccCCCCCCCCCC------ceEeeCCcccchhhhhhh--ccccccccCCCcCCCCcceEEeeecCccccccCCCccCCCC
Q 010581 171 FRCRSCGYPITEH------EFSLSGKDPYHKSCFKEL--THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHT 242 (507)
Q Consensus 171 F~C~~C~~~L~~~------~F~~~dg~pYCk~CY~k~--f~pkC~~C~k~I~~~~~G~I~~~~~~fWgqkyCp~h~H~~C 242 (507)
+.|..|...+.+. .....=|..||..|..+. ....|..|.+.+.... .... +. ..+-
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~--l~~l----~i---------~~~~ 72 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR--YHPI----YI---------GSGT 72 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC--EEEC----BC---------SSSS
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc--cccc----cc---------CCCC
Confidence 5677776665432 144556888999998765 3568999999998753 1111 11 3344
Q ss_pred cccCCCCCcccc----CCceeEecCCccccchhhhhhccCCCC
Q 010581 243 SRCCSCERLESW----NTRYYSLEDGRSLCLECMESAIMDTGD 281 (507)
Q Consensus 243 F~C~~C~r~l~~----g~~~~~l~dGr~~C~~C~~sav~dt~e 281 (507)
..|..|...+.. +.....+.=|..+|..|..........
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~ 115 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT 115 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSB
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCC
Confidence 678888764432 112245566889999998776554433
No 90
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=67.40 E-value=2.7 Score=46.17 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhc
Q 010581 387 GAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLES 426 (507)
Q Consensus 387 g~ilAHE~mHawlrl~-g~~~-l~~~vEEG~Cq~~a~~wl~~ 426 (507)
..++|||+.|-|.--. .... -+..+-|||..+++++|++.
T Consensus 296 ~~viaHElAHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~ 337 (632)
T 2xq0_A 296 IDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGA 337 (632)
T ss_dssp THHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCCcchhhHHHHHHHHHHHHHHHH
Confidence 4799999999996421 0011 25678999999999999875
No 91
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=64.75 E-value=2.8 Score=27.69 Aligned_cols=27 Identities=30% Similarity=0.579 Sum_probs=19.4
Q ss_pred ccCCCCCCCCCCceEeeCCcccchhhh
Q 010581 172 RCRSCGYPITEHEFSLSGKDPYHKSCF 198 (507)
Q Consensus 172 ~C~~C~~~L~~~~F~~~dg~pYCk~CY 198 (507)
+|..|++..-..+-...+|+.|++.||
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred cCCccCCEEecceeEEECCeEecccCC
Confidence 577888877655555667888888775
No 92
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=63.76 E-value=3 Score=45.48 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHh-CCC-CCChhhhhhHHHHHHHHHhhc
Q 010581 388 AILAHELMHGWLRLK-GYR-NLNPEVEEGICQVLSYMWLES 426 (507)
Q Consensus 388 ~ilAHE~mHawlrl~-g~~-~l~~~vEEG~Cq~~a~~wl~~ 426 (507)
.++|||+.|-|.--. ... --+..+-||+..+++++|++.
T Consensus 289 ~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~ 329 (608)
T 3u9w_A 289 NVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGR 329 (608)
T ss_dssp HHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcCcCccccccchhHHHhHHHHHHHHHHHH
Confidence 589999999995321 001 115678999999999988764
No 93
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=61.57 E-value=3 Score=45.40 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhc
Q 010581 387 GAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLES 426 (507)
Q Consensus 387 g~ilAHE~mHawlrl~-g~~~-l~~~vEEG~Cq~~a~~wl~~ 426 (507)
..++|||+.|-|.--. .... -+..+-|||..+++++|++.
T Consensus 295 ~~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~ 336 (605)
T 3cia_A 295 VNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEA 336 (605)
T ss_dssp THHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCcchHhHHHHHHHHHHHHHHHHH
Confidence 3799999999996432 1111 26789999999999999876
No 94
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=61.45 E-value=1.5 Score=34.67 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=27.8
Q ss_pred cccCCCCCccccCCceeEecCCccccchhhhhhccCCCCCCchhhhHHHHHhhcccccccccccccccH
Q 010581 243 SRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVER 311 (507)
Q Consensus 243 F~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~dt~e~qpl~~~i~~f~~glgm~~~~~~pl~lv~~ 311 (507)
.+|-.|+..+. +....|..+|..| ++..+|..+||++|++.
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~c-----------------------g~~YPI~dGIPvmL~~E 49 (68)
T 2hf1_A 9 LVCPLCKGPLV-----FDKSKDELICKGD-----------------------RLAFPIKDGIPMMLESE 49 (68)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTT-----------------------TEEEEEETTEECCCGGG
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCC-----------------------CcEecCCCCeeeeChhh
Confidence 45666665332 3334578888887 44567899999999973
No 95
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=59.97 E-value=0.9 Score=35.85 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=27.8
Q ss_pred cccCCCCCccccCCceeEecCCccccchhhhhhccCCCCCCchhhhHHHHHhhccccccccccccccc
Q 010581 243 SRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVE 310 (507)
Q Consensus 243 F~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~dt~e~qpl~~~i~~f~~glgm~~~~~~pl~lv~ 310 (507)
.+|-.|+..+. +....|..+|..| ++..+|..+||++|++
T Consensus 11 L~CP~ck~~L~-----~~~~~g~LvC~~c-----------------------~~~YPI~dGIPvmL~~ 50 (67)
T 2jny_A 11 LACPKDKGPLR-----YLESEQLLVNERL-----------------------NLAYRIDDGIPVLLID 50 (67)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTT-----------------------TEEEEEETTEECCCSS
T ss_pred hCCCCCCCcCe-----EeCCCCEEEcCCC-----------------------CccccCCCCEeeeChh
Confidence 45667765332 3344678888887 3456789999999986
No 96
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=59.04 E-value=1.8 Score=34.20 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=27.8
Q ss_pred cccCCCCCccccCCceeEecCCccccchhhhhhccCCCCCCchhhhHHHHHhhccccccccccccccc
Q 010581 243 SRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVE 310 (507)
Q Consensus 243 F~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~dt~e~qpl~~~i~~f~~glgm~~~~~~pl~lv~ 310 (507)
.+|-.|+..+. +....|..+|..| +...+|..+||++|++
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~c-----------------------g~~YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 9 LVCPVTKGRLE-----YHQDKQELWSRQA-----------------------KLAYPIKDGIPYMLEN 48 (68)
T ss_dssp CBCSSSCCBCE-----EETTTTEEEETTT-----------------------TEEEEEETTEECCCTT
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCC-----------------------CcEecCCCCeeeeChh
Confidence 56777766332 3334577888887 4456788999999997
No 97
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=58.54 E-value=5.1 Score=33.70 Aligned_cols=19 Identities=37% Similarity=0.307 Sum_probs=15.6
Q ss_pred CchhHHHHHHHHHHHHHHH
Q 010581 381 LPRLLTGAILAHELMHGWL 399 (507)
Q Consensus 381 LPrl~~g~ilAHE~mHawl 399 (507)
|...-..+|||||+.|.-.
T Consensus 78 l~~~El~aVlaHElgH~~~ 96 (107)
T 3cqb_A 78 MTRDEAEAVLAHEVSHIAN 96 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHC
Confidence 4666788999999999754
No 98
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=58.46 E-value=8.5 Score=44.11 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhcc
Q 010581 386 TGAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLESE 427 (507)
Q Consensus 386 ~g~ilAHE~mHawlrl~-g~~~-l~~~vEEG~Cq~~a~~wl~~~ 427 (507)
...++|||+.|-|.--. .... -+..+-|||..++.++|++..
T Consensus 312 i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 355 (891)
T 3b34_A 312 IERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL 355 (891)
T ss_dssp HHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHH
Confidence 45899999999994210 0011 145799999999988887653
No 99
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=57.97 E-value=5.1 Score=45.80 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHh-CCC-CCChhhhhhHHHHHHHHHhhc
Q 010581 385 LTGAILAHELMHGWLRLK-GYR-NLNPEVEEGICQVLSYMWLES 426 (507)
Q Consensus 385 ~~g~ilAHE~mHawlrl~-g~~-~l~~~vEEG~Cq~~a~~wl~~ 426 (507)
....++|||+.|-|.--. ... -=+..+-|||..+++++|++.
T Consensus 301 ~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~ 344 (897)
T 2xdt_A 301 GITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSV 344 (897)
T ss_dssp HHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEeccCCcchhhhhHHHHHHHHHHHHHH
Confidence 346899999999996321 000 115688999999999999875
No 100
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=57.31 E-value=3.9 Score=44.72 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHH--h--C-----C--CC--CChhhhhhHHHHHHHHHhhc
Q 010581 385 LTGAILAHELMHGWLRL--K--G-----Y--RN--LNPEVEEGICQVLSYMWLES 426 (507)
Q Consensus 385 ~~g~ilAHE~mHawlrl--~--g-----~--~~--l~~~vEEG~Cq~~a~~wl~~ 426 (507)
-+.+++|||+.|.|.-- . . | ++ -...+-||+-++++.+|+.+
T Consensus 266 ~~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r 320 (597)
T 4fgm_A 266 TFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHT 320 (597)
T ss_dssp HHHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHH
T ss_pred chhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHH
Confidence 35789999999999542 2 1 1 11 25788999999999999975
No 101
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.66 E-value=8.6 Score=29.31 Aligned_cols=46 Identities=15% Similarity=0.337 Sum_probs=31.0
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f--~pkC~~C~k~I~~~ 216 (507)
+.|..|...+.+......=+..||..|..+.+ ..+|..|.+.|...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 45666666555422222567788999987654 57899999988764
No 102
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.91 E-value=12 Score=28.31 Aligned_cols=45 Identities=16% Similarity=0.443 Sum_probs=29.6
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhcc-----ccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELTH-----PKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~-----pkC~~C~k~I~~~ 216 (507)
+.|..|...+.. .....-+..||..|..+.+. .+|..|.+.|...
T Consensus 21 ~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 456666655554 22335677889999887653 3788888887653
No 103
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=55.86 E-value=11 Score=28.97 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=34.3
Q ss_pred CCcccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCCcCCC
Q 010581 169 NCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPTN 216 (507)
Q Consensus 169 ~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f---~pkC~~C~k~I~~~ 216 (507)
.-|.|..|...+.+ .....-|..||..|..+.+ ...|..|++.+...
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 45778888887765 3445688999999987754 45688888887653
No 104
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=55.79 E-value=3.4 Score=26.45 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=18.1
Q ss_pred hhhhhHHHHHHhcccccccccC
Q 010581 84 REKEELDHAIALSLAEDLKRPN 105 (507)
Q Consensus 84 ~e~edid~aia~sL~Ee~kk~~ 105 (507)
+|.||+.-||++|+.|.+.+.+
T Consensus 2 ~EeEEl~LAlAlS~sEae~~~~ 23 (26)
T 2d3g_P 2 QEEEELQLALALSQSEAEEKXX 23 (26)
T ss_pred chHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999999988776653
No 105
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=55.59 E-value=5.2 Score=46.25 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhc
Q 010581 385 LTGAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLES 426 (507)
Q Consensus 385 ~~g~ilAHE~mHawlrl~-g~~~-l~~~vEEG~Cq~~a~~wl~~ 426 (507)
....++|||+.|-|.--. .... =+..+-|||..++++++++.
T Consensus 363 ~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~ 406 (967)
T 3se6_A 363 WVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNA 406 (967)
T ss_dssp HHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHH
Confidence 356899999999996211 0011 14688999999999999875
No 106
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.42 E-value=8.4 Score=28.78 Aligned_cols=45 Identities=22% Similarity=0.618 Sum_probs=30.2
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f---~pkC~~C~k~I~~~ 216 (507)
+.|..|...+... ....-|..||..|..+.+ ..+|..|.+.|..+
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 5566666555432 224567789999988765 45799999888754
No 107
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.07 E-value=10 Score=31.88 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=26.6
Q ss_pred cccCCCCCCCCCCceEe-eCCcccchhhhhhhccccccccCCCcCC
Q 010581 171 FRCRSCGYPITEHEFSL-SGKDPYHKSCFKELTHPKCEVCHQYIPT 215 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~-~dg~pYCk~CY~k~f~pkC~~C~k~I~~ 215 (507)
+.|..|...+... ... .-|..||..|........|..|...+..
T Consensus 23 ~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 4455555544432 222 4567778888776655678888777643
No 108
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=50.50 E-value=10 Score=35.05 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=18.7
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|...++-.-+.+..++||||+|.+
T Consensus 124 gi~~~~~~~~~~~a~~~AHElGH~l 148 (202)
T 2w15_A 124 GVVRDHSKNNLWVAVTMAHELGHNL 148 (202)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCchhHHHHHHHHHHhhhc
Confidence 5555565545678899999999974
No 109
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=48.81 E-value=11 Score=34.80 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=17.9
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|...++-.-+.+..++||||+|-+
T Consensus 124 gi~~~~~~~~~~~a~~~AHElGHnl 148 (202)
T 1atl_A 124 GIVQDHSPINLLMGVTMAHELGHNL 148 (202)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred ceEeccCCcceeeEEEehhhhcccc
Confidence 4444555445667889999999974
No 110
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=48.10 E-value=9.8 Score=34.86 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=26.1
Q ss_pred CCCCchhhHHHHHHHHHHhCHHHHHHHHHhhCC
Q 010581 472 ASPAYGEGFRIANAAVNKYGLRRTLEHIRLTGN 504 (507)
Q Consensus 472 ~s~vYGdGfR~~~~a~~~~gl~~~l~~i~~~g~ 504 (507)
+||-||++|+.+++.+++ +++.+|++|+....
T Consensus 141 pDPyy~~~Fe~v~~~I~~-~~~~ll~~l~~e~~ 172 (173)
T 4etm_A 141 PDPYYTGNFEEVCQLIKT-GCEQLLASIQKEKQ 172 (173)
T ss_dssp CCHHHHCCHHHHHHHHHH-HHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence 578899999999998876 58888999887543
No 111
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.56 E-value=13 Score=28.55 Aligned_cols=45 Identities=20% Similarity=0.471 Sum_probs=28.6
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc--------cccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--------HPKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f--------~pkC~~C~k~I~~~ 216 (507)
+.|..|...+... ....-+..||..|..+.+ ..+|..|.+.+...
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4555665555432 223456778888887643 56788888887753
No 112
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=47.55 E-value=12 Score=34.38 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=18.2
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|...++-.-+.+..++||||+|.+
T Consensus 123 gi~~~~~~~~~~~a~~~AHElGH~l 147 (197)
T 1qua_A 123 GLIQDHSAIPLLMAVTMAHELGHNL 147 (197)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred ceEeccCCcchHHHHHHHHHHHHhc
Confidence 5555555445568899999999974
No 113
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=47.54 E-value=11 Score=31.92 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=33.7
Q ss_pred ccCCCCCCCCCCceEeeCCcccchhhhhh---hccccccccCCCcCC
Q 010581 172 RCRSCGYPITEHEFSLSGKDPYHKSCFKE---LTHPKCEVCHQYIPT 215 (507)
Q Consensus 172 ~C~~C~~~L~~~~F~~~dg~pYCk~CY~k---~f~pkC~~C~k~I~~ 215 (507)
.|..|+.|+....-..-=+..+|-+|+.. .-...|..|..+|..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 37778888876555555678999999976 345789999999875
No 114
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=47.29 E-value=10 Score=30.95 Aligned_cols=43 Identities=30% Similarity=0.321 Sum_probs=28.3
Q ss_pred hhhhhhHHHHHHhccccccccc--CCCc-------------ccccchHHhHHHHhccc
Q 010581 83 DREKEELDHAIALSLAEDLKRP--NGQR-------------WRSNTDEDYAWALQDSQ 125 (507)
Q Consensus 83 ~~e~edid~aia~sL~Ee~kk~--~~~~-------------wh~e~ce~c~raLq~~l 125 (507)
+.++|||-+||.+||.|-.... .+.. -..++++.+..+|.-+|
T Consensus 9 ~~eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASL 66 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESL 66 (81)
T ss_dssp SSHHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHH
Confidence 4588999999999998754331 1110 01237888888886554
No 115
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.75 E-value=14 Score=28.44 Aligned_cols=45 Identities=20% Similarity=0.421 Sum_probs=29.2
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc--------cccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--------HPKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f--------~pkC~~C~k~I~~~ 216 (507)
+.|..|...+... ....-+..||..|..+.+ ...|..|.+.+...
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 20 VTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4566666655542 234467788998886632 45788888887654
No 116
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=46.25 E-value=13 Score=34.44 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=18.1
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|...++-.-+.+..++||||+|.+
T Consensus 126 gi~~~~~~~~~~~a~~~AHElGH~l 150 (203)
T 1kuf_A 126 AVVKDHSSKVFMVAVTMTHELGHNL 150 (203)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCcchhhHHHHHHHhhhhc
Confidence 4555555444668899999999974
No 117
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=46.17 E-value=18 Score=25.63 Aligned_cols=27 Identities=19% Similarity=0.541 Sum_probs=17.9
Q ss_pred CCcccchhhhhhhc--cccccccCCCcCC
Q 010581 189 GKDPYHKSCFKELT--HPKCEVCHQYIPT 215 (507)
Q Consensus 189 dg~pYCk~CY~k~f--~pkC~~C~k~I~~ 215 (507)
=+..||..|..+.+ ...|..|.+.|.+
T Consensus 27 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp TSCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45667777776543 3678888877653
No 118
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=46.09 E-value=13 Score=34.13 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=17.8
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|...++-.-+.+..++||||+|.+
T Consensus 121 gi~~~~~~~~~~~a~~~AHElGH~l 145 (197)
T 1bud_A 121 GVIQDHSSVNRLVAITLAHEMAHNL 145 (197)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred ceEeecCCchhHHHHHHHHHHhhhc
Confidence 4444454434568899999999985
No 119
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=45.96 E-value=13 Score=34.61 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=18.3
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|....+..-+.++.++|||++|-+
T Consensus 121 ~v~~d~~~~~~~~a~~~AHElGH~l 145 (208)
T 4dd8_A 121 AVNQDHSKNPVGVACTMAHEMGHNL 145 (208)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCChhHHHHHHHHHHHHHc
Confidence 4555556555667889999999974
No 120
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=45.33 E-value=16 Score=31.60 Aligned_cols=27 Identities=19% Similarity=0.561 Sum_probs=16.8
Q ss_pred CCcccchhhhhhh--ccccccccCCCcCC
Q 010581 189 GKDPYHKSCFKEL--THPKCEVCHQYIPT 215 (507)
Q Consensus 189 dg~pYCk~CY~k~--f~pkC~~C~k~I~~ 215 (507)
-|..||..|..+. ....|..|.++|..
T Consensus 71 CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 71 CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3556777776553 24557777777654
No 121
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=45.22 E-value=28 Score=28.92 Aligned_cols=54 Identities=26% Similarity=0.597 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhh---ccccccccCCCc
Q 010581 139 YPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKEL---THPKCEVCHQYI 213 (507)
Q Consensus 139 ~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~---f~pkC~~C~k~I 213 (507)
.....++|.-|+..|. +.+.|..| -.|..|. -|.|+.||... -...|..|+..-
T Consensus 12 ~~~~~qiCqiCGD~VG----~~~~Ge~F----VAC~eC~-------------FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 12 KNLDGQFCEICGDQIG----LTVEGDLF----VACNECG-------------FPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SCCSSCBCSSSCCBCC----BCSSSSBC----CSCSSSC-------------CCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred cccCCCccccccCccc----cCCCCCEE----EeeeccC-------------ChhhHHHHHHHHhccCccccccCCcc
Confidence 4456789999999884 22333333 2345553 36699999643 245577776553
No 122
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=45.06 E-value=14 Score=34.15 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=18.2
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|...++-.-+.+..++||||+|-+
T Consensus 123 gi~~~~~~~~~~~a~~~AHElGH~l 147 (202)
T 1yp1_A 123 GIIQDFSAIPLLMAVVMAHELGHNL 147 (202)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred ceEeecCCchhHHHHHHHHHHHHhc
Confidence 5555555444567899999999985
No 123
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=44.92 E-value=9.2 Score=30.23 Aligned_cols=40 Identities=13% Similarity=0.352 Sum_probs=27.9
Q ss_pred cccCCCCCccccCCceeEecCCccccchhhhhhccCCCCCCchhhhHHHHHhhccccccccccccccc
Q 010581 243 SRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVE 310 (507)
Q Consensus 243 F~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~dt~e~qpl~~~i~~f~~glgm~~~~~~pl~lv~ 310 (507)
.+|-.|+..+. +....|..+|..| +...+|..+||++|++
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~c-----------------------g~~YPI~dGIPvmL~~ 48 (70)
T 2js4_A 9 LVCPVCKGRLE-----FQRAQAELVCNAD-----------------------RLAFPVRDGVPIMLEA 48 (70)
T ss_dssp CBCTTTCCBEE-----EETTTTEEEETTT-----------------------TEEEEEETTEECCCGG
T ss_pred eECCCCCCcCE-----EeCCCCEEEcCCC-----------------------CceecCCCCeeeeChh
Confidence 56777776332 3334578888887 4456789999999996
No 124
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=44.54 E-value=10 Score=34.31 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.4
Q ss_pred CCCCchhhHHHHHHHHHHhCHHHHHHHHHhhCC
Q 010581 472 ASPAYGEGFRIANAAVNKYGLRRTLEHIRLTGN 504 (507)
Q Consensus 472 ~s~vYGdGfR~~~~a~~~~gl~~~l~~i~~~g~ 504 (507)
+||-||++|+.+++.+++ ++..+|++|+..-+
T Consensus 124 pDPyy~~~F~~v~~~Ie~-~~~~ll~~l~~~~~ 155 (158)
T 3rof_A 124 PDPYYTNNFEGVYDMVLS-SCDNLIDYIVKDAN 155 (158)
T ss_dssp CCHHHHCCHHHHHHHHHH-HHHHHHHHHHHHTT
T ss_pred CCCCCCchHHHHHHHHHH-HHHHHHHHHHhhcc
Confidence 688899999999999886 67888888876544
No 125
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=44.51 E-value=5.5 Score=45.50 Aligned_cols=41 Identities=17% Similarity=0.409 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhc
Q 010581 386 TGAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLES 426 (507)
Q Consensus 386 ~g~ilAHE~mHawlrl~-g~~~-l~~~vEEG~Cq~~a~~wl~~ 426 (507)
...++|||+.|-|.--. .... -+..+-|||..++.++|++.
T Consensus 287 i~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~ 329 (867)
T 2gtq_A 287 IESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGD 329 (867)
T ss_dssp HHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcEEEecccccccchHHHHHHHHHHHHHH
Confidence 45899999999994211 0111 14679999999998888765
No 126
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.40 E-value=16 Score=28.42 Aligned_cols=43 Identities=26% Similarity=0.540 Sum_probs=29.1
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCCcC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIP 214 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f--~pkC~~C~k~I~ 214 (507)
+.|..|...+.. .....-+..||..|..+.+ ...|..|.+.+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456666665544 2334567788999987654 467999998876
No 127
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=44.31 E-value=7.1 Score=37.69 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEEcCCchh-----HHHHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRL-----LTGAILAHELMHGWLRL 401 (507)
Q Consensus 374 ~Ilvl~GLPrl-----~~g~ilAHE~mHawlrl 401 (507)
.|+|-.||=.. -..+|||||+.|.-.+-
T Consensus 83 ~I~v~~gLl~~l~~~~ELaaVLaHElgH~~~~H 115 (253)
T 3c37_A 83 RVYVHTGLLKAADNETELAGVLAHEINHAVARH 115 (253)
T ss_dssp EEEEEHHHHHHCSSHHHHHHHHHHHHHHHHTTH
T ss_pred eEEeeHHHHhhCCCHHHHHHHHHHHHHHHHCcC
Confidence 56666666444 47899999999985443
No 128
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=43.92 E-value=12 Score=37.40 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=57.8
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHHHHHhCC--C----CCC----hhhhhhHHHHHHHHHhhccccCCCCCCCCCCCCCC
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGWLRLKGY--R----NLN----PEVEEGICQVLSYMWLESEVLPDYRNMPSTSSAST 443 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHawlrl~g~--~----~l~----~~vEEG~Cq~~a~~wl~~~~~~~~~~~~~~~~~~~ 443 (507)
.|+|=..++..-.-.+|||||.|.+|.-..- . .++ ....|-.|+.+|-..|=-.
T Consensus 84 ~I~LN~~~~~~rqrFTLAHELGHllLh~~~~~~~d~~~~~~~~~~~~~~E~eAN~FAa~LLMP~---------------- 147 (301)
T 3dte_A 84 VILINSQVRPERQRFTLAHEISHALLLGDDDLLSDLHDEYEGDRLEQVIETLCNVGAAALLMPA---------------- 147 (301)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHSCH----------------
T ss_pred EEEEcCCCChhhHHHHHHHHHHHHHhccccccccchhhhccccchhhHHHHHHHHHHHHHhCCH----------------
Confidence 5666677888888899999999999975420 0 111 2345777888777655221
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhhhcCCCCCchhhHHHHHHHHHHhC--HHHHHHHHHhhCCCC
Q 010581 444 SSSSSKKGGKSEVEKKLGEFFMHQIAHDASPAYGEGFRIANAAVNKYG--LRRTLEHIRLTGNFP 506 (507)
Q Consensus 444 ~~~~~~~g~~~~~e~~l~~f~~~qi~~d~s~vYGdGfR~~~~a~~~~g--l~~~l~~i~~~g~~p 506 (507)
..+.+++... + .....+.+..+++| ...++..+...|..|
T Consensus 148 --------------~~~~~~~~~~---~------~~~~~I~~LA~~FgVS~eav~~RL~~l~~~p 189 (301)
T 3dte_A 148 --------------ELIDDLLTRF---G------PTGRALAELARRADVSATSALYALAERTAPP 189 (301)
T ss_dssp --------------HHHHHHHHHH---C------SSHHHHHHHHHHHTCCHHHHHHHHHHTCCSC
T ss_pred --------------HHHHHHHHhc---C------CCHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 1223333221 1 11356677777776 667777777777666
No 129
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0
Probab=43.88 E-value=6.5 Score=43.38 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHH
Q 010581 385 LTGAILAHELMHGWL 399 (507)
Q Consensus 385 ~~g~ilAHE~mHawl 399 (507)
..|+|+||||+|++=
T Consensus 500 ~iG~vigHEi~H~FD 514 (670)
T 3dwb_A 500 GIGVVVGHELTHAFD 514 (670)
T ss_dssp THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhccC
Confidence 568999999999984
No 130
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.67 E-value=19 Score=27.23 Aligned_cols=44 Identities=27% Similarity=0.511 Sum_probs=28.2
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCCcCC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPT 215 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f--~pkC~~C~k~I~~ 215 (507)
+.|..|...+... ....-+..||..|..+.+ ...|..|.+.|..
T Consensus 16 ~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 16 PECAICLQTCVHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCccCCcccCCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4555565555432 333456778888887643 4679999888764
No 131
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.64 E-value=18 Score=26.32 Aligned_cols=27 Identities=15% Similarity=0.469 Sum_probs=16.8
Q ss_pred CCcccchhhhhhhccccccccCCCcCCC
Q 010581 189 GKDPYHKSCFKELTHPKCEVCHQYIPTN 216 (507)
Q Consensus 189 dg~pYCk~CY~k~f~pkC~~C~k~I~~~ 216 (507)
-+..||..|..+ ...+|..|.+.+...
T Consensus 24 CgH~fC~~Ci~~-~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 24 CLHTLCSGCLEA-SGMQCPICQAPWPLG 50 (56)
T ss_dssp TSCCSBTTTCSS-SSSSCSSCCSSSSCC
T ss_pred CCCcccHHHHcc-CCCCCCcCCcEeecC
Confidence 345556666544 355788888877654
No 132
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=42.97 E-value=19 Score=26.76 Aligned_cols=44 Identities=18% Similarity=0.493 Sum_probs=25.9
Q ss_pred ccCCCCCCCCCCceEeeCCcccchhhhhhh--ccccccccCCCcCC
Q 010581 172 RCRSCGYPITEHEFSLSGKDPYHKSCFKEL--THPKCEVCHQYIPT 215 (507)
Q Consensus 172 ~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~--f~pkC~~C~k~I~~ 215 (507)
.|..|...+........=+..||..|..+. ....|..|...+..
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 344444444432233334566788887653 24679999888764
No 133
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=42.84 E-value=12 Score=30.28 Aligned_cols=44 Identities=16% Similarity=0.454 Sum_probs=26.8
Q ss_pred cccCCCCCCCCCCceEe-eCCcccchhhhhhhc--cccccccCCCcCC
Q 010581 171 FRCRSCGYPITEHEFSL-SGKDPYHKSCFKELT--HPKCEVCHQYIPT 215 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~-~dg~pYCk~CY~k~f--~pkC~~C~k~I~~ 215 (507)
+.|..|...+.+ .... .-|..||..|..+.+ ...|..|...+..
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 455666555544 2222 456778888876643 4567777777654
No 134
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=42.81 E-value=14 Score=30.70 Aligned_cols=29 Identities=24% Similarity=0.527 Sum_probs=17.1
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhh
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKE 200 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k 200 (507)
|.|..|...+.. .....=|..||..|..+
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~ 44 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQS 44 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCC
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHH
Confidence 556666655543 23334566788888665
No 135
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.79 E-value=16 Score=30.00 Aligned_cols=43 Identities=26% Similarity=0.501 Sum_probs=24.2
Q ss_pred ccCCCCCCCCCCceEeeCCcccchhhhhhhcc-----ccccccCCCcCC
Q 010581 172 RCRSCGYPITEHEFSLSGKDPYHKSCFKELTH-----PKCEVCHQYIPT 215 (507)
Q Consensus 172 ~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~-----pkC~~C~k~I~~ 215 (507)
.|..|...+... ....-|..||..|..+.+. ..|..|...+..
T Consensus 23 ~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 23 ECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp SCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCcccChhhcCe-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 455554444332 2234567788888776442 257777766654
No 136
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=41.30 E-value=24 Score=29.23 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=35.2
Q ss_pred CCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCCcCC
Q 010581 168 PNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPT 215 (507)
Q Consensus 168 p~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f--~pkC~~C~k~I~~ 215 (507)
+.-|.|..|...+.+ ......|..||+.|-.+.. ...|..|++++..
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 677899999888776 4555689999999976543 4667778777664
No 137
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=41.20 E-value=9.9 Score=33.79 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 010581 386 TGAILAHELMHGWLRL 401 (507)
Q Consensus 386 ~g~ilAHE~mHawlrl 401 (507)
.-.|++||++|| |-|
T Consensus 108 ~~~v~~HEiGHa-LGL 122 (160)
T 2jsd_A 108 LFTVAAHEFGHA-LGL 122 (160)
T ss_dssp HHHHHHHHHHHH-HTC
T ss_pred hHHHHHHHhHhh-hcC
Confidence 458999999999 544
No 138
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=40.97 E-value=9.9 Score=29.97 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=26.9
Q ss_pred cccCCCCCccccCCceeEecCCccccchhhhhhccCCCCCCchhhhHHHHHhhccccccccccccccc
Q 010581 243 SRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVE 310 (507)
Q Consensus 243 F~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav~dt~e~qpl~~~i~~f~~glgm~~~~~~pl~lv~ 310 (507)
.+|-.|+..+. +....+..+|..| +..-+|..+||++|++
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~c-----------------------g~~YPI~dGIPvmL~~ 48 (69)
T 2pk7_A 9 LACPICKGPLK-----LSADKTELISKGA-----------------------GLAYPIRDGIPVMLES 48 (69)
T ss_dssp CCCTTTCCCCE-----ECTTSSEEEETTT-----------------------TEEEEEETTEECCCGG
T ss_pred eeCCCCCCcCe-----EeCCCCEEEcCCC-----------------------CcEecCcCCeeeeChh
Confidence 45666665332 2233577888877 3456788999999987
No 139
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex, pathogenicity, phagosome matura; HET: RDF 211 PGE PG4; 2.60A {Mycobacterium tuberculosis}
Probab=39.40 E-value=8.4 Score=42.92 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHH
Q 010581 385 LTGAILAHELMHGWL 399 (507)
Q Consensus 385 ~~g~ilAHE~mHawl 399 (507)
..|+|+||||+|++=
T Consensus 522 ~iG~vIgHEi~HgFD 536 (699)
T 3zuk_A 522 GIGAVIGHEIGHGFD 536 (699)
T ss_dssp THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhh
Confidence 579999999999984
No 140
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP: d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A* 2yb9_A*
Probab=38.86 E-value=8.2 Score=42.69 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHH
Q 010581 385 LTGAILAHELMHGWL 399 (507)
Q Consensus 385 ~~g~ilAHE~mHawl 399 (507)
..|+|+||||+|++-
T Consensus 523 ~iG~vigHEi~H~FD 537 (696)
T 1r1h_A 523 GIGMVIGHEITHGFD 537 (696)
T ss_dssp THHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhh
Confidence 489999999999974
No 141
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=38.73 E-value=26 Score=28.86 Aligned_cols=47 Identities=6% Similarity=-0.053 Sum_probs=34.0
Q ss_pred CCCcccCCCCCCCCCCceEeeCC-cccchhhhhhhc--cccccccCCCcCC
Q 010581 168 PNCFRCRSCGYPITEHEFSLSGK-DPYHKSCFKELT--HPKCEVCHQYIPT 215 (507)
Q Consensus 168 p~CF~C~~C~~~L~~~~F~~~dg-~pYCk~CY~k~f--~pkC~~C~k~I~~ 215 (507)
+.-|.|..|...+.+ ......| ..||+.|-.+.+ ...|..|++++..
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 567889999887776 4445566 999999976643 4567777777654
No 142
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=38.44 E-value=9.5 Score=35.95 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=19.2
Q ss_pred ccCCCCCCCCCCceEeeCCcccchhhhhh
Q 010581 172 RCRSCGYPITEHEFSLSGKDPYHKSCFKE 200 (507)
Q Consensus 172 ~C~~C~~~L~~~~F~~~dg~pYCk~CY~k 200 (507)
+|..|+.......-...+++++|..|+.+
T Consensus 174 ~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 174 RCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp ECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 34555554444445567899999999865
No 143
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.43 E-value=14 Score=27.75 Aligned_cols=44 Identities=16% Similarity=0.470 Sum_probs=28.8
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f--~pkC~~C~k~I~~~ 216 (507)
+.|..|...+.. ....=+..||..|..+.+ ...|..|.+.|...
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 455556555554 344456778888887643 46788888887754
No 144
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=38.37 E-value=14 Score=28.23 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=23.8
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc---------cccccccCCCcCC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---------HPKCEVCHQYIPT 215 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f---------~pkC~~C~k~I~~ 215 (507)
+.|..|...+... ....=|..||..|..+.+ ..+|..|.+.+..
T Consensus 13 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 13 VTCPICLELLTEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CEETTTTEECSSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCcCCCcccCCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4455554444331 123356677777776533 3457777766654
No 145
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase, hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4 NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A* 2c6n_A* 2c6f_A*
Probab=38.29 E-value=25 Score=38.83 Aligned_cols=33 Identities=36% Similarity=0.568 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhCCCCC--------ChhhhhhHHHHHHH
Q 010581 388 AILAHELMHGWLRLKGYRNL--------NPEVEEGICQVLSY 421 (507)
Q Consensus 388 ~ilAHE~mHawlrl~g~~~l--------~~~vEEG~Cq~~a~ 421 (507)
.++-|||+|+...+. |..+ +|-.+|.||+++|.
T Consensus 357 ~t~hHEmGH~qy~~~-y~~~P~~~r~~anpgfhEAige~~sl 397 (629)
T 3nxq_A 357 STVHHEMGHIQYYLQ-YKDLPVSLRRGANPGFHEAIGDVLAL 397 (629)
T ss_dssp HHHHHHHHHHHHHHH-STTSCGGGCSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhcCCccccCCCCchHHHHHHHHHHH
Confidence 578899999888876 3333 57789999999875
No 146
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=38.27 E-value=23 Score=27.04 Aligned_cols=44 Identities=20% Similarity=0.489 Sum_probs=28.3
Q ss_pred cccCCCCCCCCCCceEee-CCcccchhhhhhhcc----ccccccCCCcCC
Q 010581 171 FRCRSCGYPITEHEFSLS-GKDPYHKSCFKELTH----PKCEVCHQYIPT 215 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~-dg~pYCk~CY~k~f~----pkC~~C~k~I~~ 215 (507)
+.|..|...+.+ ..... =+..||..|..+.+. ..|..|.+.+..
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 456666665554 23344 478889988876542 478888887543
No 147
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=38.09 E-value=18 Score=29.76 Aligned_cols=44 Identities=16% Similarity=0.465 Sum_probs=29.1
Q ss_pred cccCCCCCCCCCCceEe-eCCcccchhhhhhhc--cccccccCCCcCC
Q 010581 171 FRCRSCGYPITEHEFSL-SGKDPYHKSCFKELT--HPKCEVCHQYIPT 215 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~-~dg~pYCk~CY~k~f--~pkC~~C~k~I~~ 215 (507)
+.|..|...+.+ .... .-|..||..|..+.+ ...|..|...+..
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 567777776655 3333 678889999987643 3567777766654
No 148
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=37.41 E-value=20 Score=37.32 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|..-+|---+.+..++||||.|-+
T Consensus 125 gi~~d~~~~~~~~a~t~AHElGHnl 149 (419)
T 2dw0_A 125 GIIQDYSEINLVVAVIMAHEMGHNL 149 (419)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcchhhhhhHHHHHHHHc
Confidence 5555566555778899999999975
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=37.20 E-value=22 Score=33.62 Aligned_cols=47 Identities=11% Similarity=0.011 Sum_probs=32.2
Q ss_pred CCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCCcCC
Q 010581 168 PNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPT 215 (507)
Q Consensus 168 p~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f---~pkC~~C~k~I~~ 215 (507)
+.-|.|..|...+.+ ......|..||+.|-.+.. ...|..|++++..
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 345777777776665 4445578899999976532 3348888888764
No 150
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=37.17 E-value=33 Score=28.57 Aligned_cols=70 Identities=19% Similarity=0.410 Sum_probs=47.5
Q ss_pred CCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCC------ceEeeCCcccchhhhhhh--ccccccccCCCcCC
Q 010581 144 KVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEH------EFSLSGKDPYHKSCFKEL--THPKCEVCHQYIPT 215 (507)
Q Consensus 144 ~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~------~F~~~dg~pYCk~CY~k~--f~pkC~~C~k~I~~ 215 (507)
..|+.|.+.+........ .....=+.|..|...+... .....-+..||..|..+. ....|..|...|..
T Consensus 49 ~~CP~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SBCTTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 378899998864444332 2234567788888876542 134456889999998763 35689999998876
Q ss_pred C
Q 010581 216 N 216 (507)
Q Consensus 216 ~ 216 (507)
+
T Consensus 126 ~ 126 (133)
T 4ap4_A 126 K 126 (133)
T ss_dssp G
T ss_pred h
Confidence 4
No 151
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=37.15 E-value=16 Score=32.57 Aligned_cols=43 Identities=12% Similarity=0.382 Sum_probs=25.3
Q ss_pred cccCCCCCCCCCCceEe-eCCcccchhhhhhhc---cccccccCCCcC
Q 010581 171 FRCRSCGYPITEHEFSL-SGKDPYHKSCFKELT---HPKCEVCHQYIP 214 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~-~dg~pYCk~CY~k~f---~pkC~~C~k~I~ 214 (507)
+.|..|...+.. .... .-|..||..|..+.+ ...|..|...|.
T Consensus 55 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 445555555544 2222 457788999987643 345777766664
No 152
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=37.08 E-value=42 Score=27.98 Aligned_cols=96 Identities=18% Similarity=0.301 Sum_probs=52.5
Q ss_pred CCCCCCCCCccCCCceEEec--CccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCCcCCCCcce
Q 010581 143 YKVCGGCNCDIGYGNYLGCM--GTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGL 220 (507)
Q Consensus 143 ~~~C~~C~k~I~~g~~l~al--gk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G~ 220 (507)
...|..|+..-.....|... ++.||+.|..-.. .+ +..+.-+|..|. .|.+|++.-.... +
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C~------~C~~C~~~~~~~~--l 69 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TP-------LKRAGWQCPECK------VCQNCKQSGEDSK--M 69 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CT-------TTSTTCCCTTTC------CCTTTCCCSCCTT--E
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--cc-------ccccCccCCcCC------cccccCccCCCCC--e
Confidence 35688887653212334433 4789998875331 11 124566788773 6888988754321 2
Q ss_pred EEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhh
Q 010581 221 IEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMES 274 (507)
Q Consensus 221 I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~s 274 (507)
+.- ..|+.-||..|..- ++. .+..+.++|..|...
T Consensus 70 l~C--------d~C~~~yH~~Cl~p-------pl~----~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 70 LVC--------DTCDKGYHTFCLQP-------VMK----SVPTNGWKCKNCRIC 104 (111)
T ss_dssp EEC--------SSSCCEEEGGGSSS-------CCS----SCCSSCCCCHHHHCC
T ss_pred eEC--------CCCCcHHhHHhcCC-------ccc----cCCCCCcCCcCCcCc
Confidence 211 13555567665432 111 123468899988543
No 153
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=36.71 E-value=27 Score=27.77 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=34.4
Q ss_pred CCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCCcCC
Q 010581 168 PNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPT 215 (507)
Q Consensus 168 p~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f--~pkC~~C~k~I~~ 215 (507)
+.-|.|..|...+.+ ......|..||+.|-.+.. ...|..|++++..
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 566889999887776 4455689999999876533 4678888877654
No 154
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.66 E-value=22 Score=27.62 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=28.9
Q ss_pred cccCCCCCCCCCC---ceEeeCCcccchhhhhhhcc-----ccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEH---EFSLSGKDPYHKSCFKELTH-----PKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~---~F~~~dg~pYCk~CY~k~f~-----pkC~~C~k~I~~~ 216 (507)
+.|..|...+... .....-+..||..|..+... .+|..|.+.+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4455555555432 22334577889999877542 5799999887654
No 155
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=36.48 E-value=15 Score=35.23 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=14.9
Q ss_pred cCC--chhHHHHHHHHHHHHHH
Q 010581 379 YGL--PRLLTGAILAHELMHGW 398 (507)
Q Consensus 379 ~GL--Prl~~g~ilAHE~mHaw 398 (507)
||- |...+..++||||.|-+
T Consensus 173 ~g~~~~~~~~a~~~AHElGHnl 194 (257)
T 2ddf_A 173 YGKTILTKEADLVTTHELGHNF 194 (257)
T ss_dssp TTEECCHHHHHHHHHHHHHHHT
T ss_pred cCcccccceeeeeeeeehhhhc
Confidence 663 33347889999999975
No 156
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=35.92 E-value=20 Score=37.37 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=18.2
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|...++---+.+..++||||.|-+
T Consensus 134 gi~~d~~~~~~~~a~t~AHElGHnl 158 (427)
T 2ero_A 134 GIVQDHSKIHHLVAIAMAHEMGHNL 158 (427)
T ss_dssp EEEECCBSSHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCchhHHHHHHHHHHHHhc
Confidence 4544454345678899999999976
No 157
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=35.58 E-value=11 Score=36.44 Aligned_cols=47 Identities=30% Similarity=0.783 Sum_probs=32.3
Q ss_pred CCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc----cccccccCCCcCCC
Q 010581 143 YKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT----HPKCEVCHQYIPTN 216 (507)
Q Consensus 143 ~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f----~pkC~~C~k~I~~~ 216 (507)
...|..|+..|..| .+|..|+ ..+|..|+.+.+ .++|..|+...+..
T Consensus 180 i~~C~iC~~iv~~g--------------~~C~~C~-------------~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG--------------QSCETCG-------------IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC--------------EECSSSC-------------CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC--------------cccCccC-------------hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 57899999988633 4555554 334666766543 46899999987664
No 158
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=35.28 E-value=21 Score=30.07 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=19.2
Q ss_pred CCcccchhhhhhhc---cccccccCCCcCC
Q 010581 189 GKDPYHKSCFKELT---HPKCEVCHQYIPT 215 (507)
Q Consensus 189 dg~pYCk~CY~k~f---~pkC~~C~k~I~~ 215 (507)
-|..||..|....+ ...|..|.+.+..
T Consensus 70 CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 70 CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45668888876643 2378888888765
No 159
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=35.18 E-value=17 Score=34.62 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHh-CC
Q 010581 384 LLTGAILAHELMHGWLRLK-GY 404 (507)
Q Consensus 384 l~~g~ilAHE~mHawlrl~-g~ 404 (507)
.++.+++.||++|+|..-. |.
T Consensus 46 ~l~~~v~~HElgH~~~A~~~G~ 67 (224)
T 3b4r_A 46 LLFVSVVLHELGHSYVAKKYGV 67 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 3577889999999999765 54
No 160
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=35.06 E-value=36 Score=26.18 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=26.1
Q ss_pred ccCCCCCCCCCCceEeeCCcc-cchhhhhhhccccccccCCCcCC
Q 010581 172 RCRSCGYPITEHEFSLSGKDP-YHKSCFKELTHPKCEVCHQYIPT 215 (507)
Q Consensus 172 ~C~~C~~~L~~~~F~~~dg~p-YCk~CY~k~f~pkC~~C~k~I~~ 215 (507)
.|..|...+.+ .....=|.. +|..|.... .+|..|.+.|..
T Consensus 26 ~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 26 LCKICMDRNIA-IVFVPCGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp BCTTTSSSBCC-EEEETTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC-EEEcCCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 34455444433 222345566 888887765 889999998875
No 161
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=33.87 E-value=15 Score=32.85 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=9.9
Q ss_pred HHHHHHHHHHH
Q 010581 387 GAILAHELMHG 397 (507)
Q Consensus 387 g~ilAHE~mHa 397 (507)
-.|++||++||
T Consensus 112 ~~va~HEiGHa 122 (159)
T 2ovx_A 112 FLVAAHQFGHA 122 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhhhhhhhh
Confidence 47999999998
No 162
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.86 E-value=15 Score=27.25 Aligned_cols=28 Identities=14% Similarity=0.453 Sum_probs=20.3
Q ss_pred eeCCcccchhhhhhhc--cccccccCCCcC
Q 010581 187 LSGKDPYHKSCFKELT--HPKCEVCHQYIP 214 (507)
Q Consensus 187 ~~dg~pYCk~CY~k~f--~pkC~~C~k~I~ 214 (507)
..-+..||..|..+.+ ...|..|.+.|.
T Consensus 38 ~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 38 TECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3456788888887643 567888888775
No 163
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A
Probab=33.39 E-value=15 Score=34.42 Aligned_cols=14 Identities=36% Similarity=0.171 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 010581 386 TGAILAHELMHGWL 399 (507)
Q Consensus 386 ~g~ilAHE~mHawl 399 (507)
.-.++.||||||-=
T Consensus 87 ~~g~i~HEl~HalG 100 (201)
T 3edh_A 87 KFGIVVHELGHVVG 100 (201)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHhc
Confidence 34799999999953
No 164
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=33.25 E-value=26 Score=36.47 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=18.5
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|..-+|---+.+..++||||.|.+
T Consensus 127 gi~~d~~~~~~~~a~t~AHElGHnl 151 (427)
T 2e3x_A 127 GIVQEQGNRNFKTAVIMAHELSHNL 151 (427)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCccceeeeehHHHHHHhh
Confidence 5555566445677899999999964
No 165
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.15 E-value=23 Score=26.14 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=30.6
Q ss_pred cccCCCCC-CCCCCc---eEeeCCcccchhhhhhhc---cccccccCCCcCCC
Q 010581 171 FRCRSCGY-PITEHE---FSLSGKDPYHKSCFKELT---HPKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~-~L~~~~---F~~~dg~pYCk~CY~k~f---~pkC~~C~k~I~~~ 216 (507)
+.|..|.. .+.+.. ....=|..||..|..+.+ ..+|..|++.+..+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 45666666 343322 234567889999987763 35799999998764
No 166
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Probab=33.12 E-value=18 Score=35.35 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=15.3
Q ss_pred cCC--chhHHHHHHHHHHHHHH
Q 010581 379 YGL--PRLLTGAILAHELMHGW 398 (507)
Q Consensus 379 ~GL--Prl~~g~ilAHE~mHaw 398 (507)
||- |...+..++||||.|-+
T Consensus 179 ~g~~~~~~~~a~~~AHElGHnl 200 (288)
T 2i47_A 179 YGKTILTKEADLVTTHELGHNF 200 (288)
T ss_dssp TTEECCHHHHHHHHHHHHHHHT
T ss_pred cCcccchhhHHHHHHHHHHhhc
Confidence 663 44457899999999975
No 167
>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}
Probab=32.75 E-value=20 Score=36.04 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=30.8
Q ss_pred chhHHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHH
Q 010581 382 PRLLTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYM 422 (507)
Q Consensus 382 Prl~~g~ilAHE~mHawlrl~-g--~~~l~~~vEEG~Cq~~a~~ 422 (507)
|-....-|+||||+|+..--. | |.+=+=.+-|+|--+++.+
T Consensus 125 ~~~~slDVvaHEltHGVt~~ta~L~Y~~qsGaLNEs~SDifG~~ 168 (304)
T 4ger_A 125 AFSGDPDVVGHELTHGVTEYTSNLEYYGESGALNEAFSDVIGND 168 (304)
T ss_dssp CGGGSHHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhccccccccccCCccccCCccchhHHHHHHHHHH
Confidence 433357899999999999876 2 3333456889999999876
No 168
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.44 E-value=16 Score=29.01 Aligned_cols=49 Identities=27% Similarity=0.710 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcc----ccccccCCCcCCC
Q 010581 141 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTH----PKCEVCHQYIPTN 216 (507)
Q Consensus 141 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~----pkC~~C~k~I~~~ 216 (507)
.....|+-|...|..+ .+|..| +..|+..|..+-+. ..|..|.......
T Consensus 13 ~~i~~C~IC~~~i~~g--------------~~C~~C-------------~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQG--------------QSCETC-------------GIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSS--------------EECSSS-------------CCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccC--------------CccCCC-------------CchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4567899999988532 244444 33456666665432 5699999887654
No 169
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=32.20 E-value=16 Score=34.26 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 010581 386 TGAILAHELMHGW 398 (507)
Q Consensus 386 ~g~ilAHE~mHaw 398 (507)
.-.++.||||||-
T Consensus 93 ~~g~i~HEl~HaL 105 (199)
T 3lqb_A 93 YSGIAQHELNHAL 105 (199)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHh
Confidence 3579999999994
No 170
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=32.16 E-value=18 Score=26.24 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=31.2
Q ss_pred cccCCCCCCCCCC------ceEeeCCcccchhhhhhhc--cccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEH------EFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~------~F~~~dg~pYCk~CY~k~f--~pkC~~C~k~I~~~ 216 (507)
+.|..|...+... -....-+..||..|..+.. ...|..|.+.+...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 4566666655432 1344567889999987643 56899999988764
No 171
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=31.78 E-value=27 Score=30.97 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=19.8
Q ss_pred eCCcccchhhhhhhcc---ccccccCCCcCCC
Q 010581 188 SGKDPYHKSCFKELTH---PKCEVCHQYIPTN 216 (507)
Q Consensus 188 ~dg~pYCk~CY~k~f~---pkC~~C~k~I~~~ 216 (507)
.-+..||..|..+.+. ..|..|...+...
T Consensus 95 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 95 ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3456788888766442 3688888887653
No 172
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=31.62 E-value=23 Score=35.11 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=15.9
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|..-+| +.+..++||||.|-+
T Consensus 134 gv~~d~~---~~~a~t~AHElGHnl 155 (316)
T 2rjp_A 134 AIVEDDG---LQSAFTAAHQLGHVF 155 (316)
T ss_dssp EEEECSS---TTHHHHHHHHHHHHT
T ss_pred ceEecCC---chHHHHHHHHHHhhc
Confidence 4444444 578899999999964
No 173
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=30.90 E-value=17 Score=29.79 Aligned_cols=33 Identities=21% Similarity=0.511 Sum_probs=26.9
Q ss_pred CCCCCCCCCCccCCCceEEecCccccCCCcccC
Q 010581 142 SYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCR 174 (507)
Q Consensus 142 ~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~ 174 (507)
..-.|.-|.+.+.+..++.+-...-|.-||-|+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 345788899888888888888888888888876
No 174
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=30.87 E-value=18 Score=32.59 Aligned_cols=15 Identities=47% Similarity=0.545 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 010581 386 TGAILAHELMHGWLRL 401 (507)
Q Consensus 386 ~g~ilAHE~mHawlrl 401 (507)
.-.|++||++|| |-|
T Consensus 111 ~~~v~~HEiGHa-LGL 125 (168)
T 1cge_A 111 LHRVAAHELGHS-LGL 125 (168)
T ss_dssp HHHHHHHHHHHH-TTC
T ss_pred hhhhhhhHhHhh-hcC
Confidence 458999999999 444
No 175
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding, metalloprotease, protease, secreted, zinc, zymogen; HET: LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A* 1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A* 1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Probab=30.81 E-value=24 Score=35.64 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHH
Q 010581 382 PRLLTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYM 422 (507)
Q Consensus 382 Prl~~g~ilAHE~mHawlrl~-g--~~~l~~~vEEG~Cq~~a~~ 422 (507)
|-....-|+||||+|+..--. | |.+=+-.+-|++--+++.+
T Consensus 132 ~~~~slDVv~HE~tHgvt~~~agL~y~~esGaLNEs~SDifG~~ 175 (316)
T 3dnz_A 132 PLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTL 175 (316)
T ss_dssp CGGGCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeeeeccccccccCCCcccCCccchhHHHHHHHHHH
Confidence 433357899999999999876 2 2222456889999999765
No 176
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=30.55 E-value=37 Score=26.78 Aligned_cols=46 Identities=17% Similarity=0.473 Sum_probs=28.6
Q ss_pred cccCCCCCCCCCC--ceEe-eCCcccchhhhhhhc---cccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEH--EFSL-SGKDPYHKSCFKELT---HPKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~--~F~~-~dg~pYCk~CY~k~f---~pkC~~C~k~I~~~ 216 (507)
+.|..|-.++... .+.. .-|..+|..|+.+.. ...|..|.+++...
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4556665555321 1211 256778999987754 46799999888764
No 177
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=30.40 E-value=30 Score=32.23 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHH
Q 010581 384 LLTGAILAHELMHGW 398 (507)
Q Consensus 384 l~~g~ilAHE~mHaw 398 (507)
+.+..++||||+|-+
T Consensus 134 ~~~a~~~AHElGHnl 148 (214)
T 1r55_A 134 IGAAATMAHEIGHSL 148 (214)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhc
Confidence 456899999999965
No 178
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=30.04 E-value=19 Score=32.26 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 010581 386 TGAILAHELMHGWLRL 401 (507)
Q Consensus 386 ~g~ilAHE~mHawlrl 401 (507)
.-.|++||++|| |-|
T Consensus 115 ~~~v~~HEiGHa-LGL 129 (167)
T 2xs4_A 115 LITVAAHEIGHL-LGI 129 (167)
T ss_dssp HHHHHHHHHHHH-HTB
T ss_pred hhhhHHHHHHHh-hcC
Confidence 348999999999 555
No 179
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.84 E-value=39 Score=25.74 Aligned_cols=27 Identities=26% Similarity=0.695 Sum_probs=16.9
Q ss_pred Ccccchhhhhhh--ccccccccCCCcCCC
Q 010581 190 KDPYHKSCFKEL--THPKCEVCHQYIPTN 216 (507)
Q Consensus 190 g~pYCk~CY~k~--f~pkC~~C~k~I~~~ 216 (507)
+..||..|..+. ....|..|.+.|...
T Consensus 37 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 37 NHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 445566665543 235788888887764
No 180
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=29.82 E-value=23 Score=28.07 Aligned_cols=43 Identities=21% Similarity=0.497 Sum_probs=27.8
Q ss_pred CcccCCCCCCCCCCceEee-CCcccchhhhhhhc----cccccccCCCc
Q 010581 170 CFRCRSCGYPITEHEFSLS-GKDPYHKSCFKELT----HPKCEVCHQYI 213 (507)
Q Consensus 170 CF~C~~C~~~L~~~~F~~~-dg~pYCk~CY~k~f----~pkC~~C~k~I 213 (507)
-|.|..|...+.+ ..... =|..||..|..+.+ ...|..|.+.+
T Consensus 13 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3667777666654 33344 47889999987643 24677777765
No 181
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=29.71 E-value=23 Score=28.90 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=28.3
Q ss_pred cccCCCCCCCCCCceE-eeCCcccchhhhhhhc--c-ccccccCCCcCC
Q 010581 171 FRCRSCGYPITEHEFS-LSGKDPYHKSCFKELT--H-PKCEVCHQYIPT 215 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~-~~dg~pYCk~CY~k~f--~-pkC~~C~k~I~~ 215 (507)
+.|..|...+.. ... ..=|..||..|..+.+ . ..|..|...+..
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 456666665554 222 4457789999987643 2 578888887754
No 182
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=29.57 E-value=22 Score=32.19 Aligned_cols=15 Identities=40% Similarity=0.421 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 010581 386 TGAILAHELMHGWLRL 401 (507)
Q Consensus 386 ~g~ilAHE~mHawlrl 401 (507)
.-.|++||++|| |-|
T Consensus 113 ~~~v~~HEiGHa-LGL 127 (173)
T 1hy7_A 113 LFLVAAHEIGHS-LGL 127 (173)
T ss_dssp HHHHHHHHHHHH-HTB
T ss_pred hhhhHHHHHHHh-hcC
Confidence 358999999999 554
No 183
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=29.55 E-value=18 Score=35.58 Aligned_cols=15 Identities=40% Similarity=0.403 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHH
Q 010581 384 LLTGAILAHELMHGW 398 (507)
Q Consensus 384 l~~g~ilAHE~mHaw 398 (507)
+.+..++||||.|-+
T Consensus 141 ~~~a~t~AHElGHnl 155 (300)
T 2v4b_A 141 LQAAFTTAHELGHVF 155 (300)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred ccceehhhhhhhhhc
Confidence 457899999999964
No 184
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.54 E-value=44 Score=25.15 Aligned_cols=27 Identities=19% Similarity=0.595 Sum_probs=19.7
Q ss_pred CCcccchhhhhhh--ccccccccCCCcCC
Q 010581 189 GKDPYHKSCFKEL--THPKCEVCHQYIPT 215 (507)
Q Consensus 189 dg~pYCk~CY~k~--f~pkC~~C~k~I~~ 215 (507)
-+..||..|..+. ....|..|.+.|..
T Consensus 36 C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 36 CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4567788887653 35689999998865
No 185
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2
Probab=29.21 E-value=27 Score=35.04 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHH
Q 010581 382 PRLLTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYM 422 (507)
Q Consensus 382 Prl~~g~ilAHE~mHawlrl~-g--~~~l~~~vEEG~Cq~~a~~ 422 (507)
|-....-|+||||+|+..--. | |.+=+=.+-|++--+++.+
T Consensus 134 ~~~~~lDVv~HE~tHGVt~~~agl~y~~eSGaLnEs~SDifg~~ 177 (301)
T 1bqb_A 134 NLSGANDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYF 177 (301)
T ss_dssp CGGGCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CcccccceeeeecccceecccCCCcccCCcCchhHHHHHHHhHh
Confidence 333467899999999998775 3 2223567889999999987
No 186
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=29.00 E-value=20 Score=26.70 Aligned_cols=30 Identities=13% Similarity=0.449 Sum_probs=22.1
Q ss_pred eeCCcccchhhhhhh--ccccccccCCCcCCC
Q 010581 187 LSGKDPYHKSCFKEL--THPKCEVCHQYIPTN 216 (507)
Q Consensus 187 ~~dg~pYCk~CY~k~--f~pkC~~C~k~I~~~ 216 (507)
..=+..||..|..+. ....|..|.+.+...
T Consensus 33 ~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 33 TECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 345677899998664 356899999988764
No 187
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=28.72 E-value=27 Score=35.46 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=15.7
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|.--+| +.+..++||||.|-+
T Consensus 134 gv~~d~~---~~~a~~~AHElGHnl 155 (378)
T 2rjq_A 134 AVIEDDG---LHAAFTVAHEIGHLL 155 (378)
T ss_dssp EEEECCS---TTHHHHHHHHHHHHT
T ss_pred ceEcccC---cchhhhhhhhhhhhc
Confidence 3433445 467899999999964
No 188
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=28.50 E-value=15 Score=27.72 Aligned_cols=15 Identities=33% Similarity=0.676 Sum_probs=11.6
Q ss_pred ccccccccccccccc
Q 010581 296 MNMKLDQQIPMLLVE 310 (507)
Q Consensus 296 lgm~~~~~~pl~lv~ 310 (507)
+.-+|..+||++|++
T Consensus 36 ~~YPI~dGIPvlL~~ 50 (56)
T 2kpi_A 36 LAYPVRDGIPVLLVD 50 (56)
T ss_dssp CEEEEETTEECCCTT
T ss_pred cEEeeECCEeeeCHH
Confidence 455688899999885
No 189
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=27.96 E-value=27 Score=32.47 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHH
Q 010581 384 LLTGAILAHELMHGW 398 (507)
Q Consensus 384 l~~g~ilAHE~mHaw 398 (507)
+.+..++||||+|-+
T Consensus 139 ~~~a~~~AHElGHnl 153 (217)
T 3b8z_A 139 LHAAFTVAHEIGHLL 153 (217)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred cchhhhhHhhhhhhc
Confidence 356789999999964
No 190
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=27.62 E-value=34 Score=28.61 Aligned_cols=45 Identities=20% Similarity=0.437 Sum_probs=31.1
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f---~pkC~~C~k~I~~~ 216 (507)
+.|..|...+.. .....-|..||..|..+.+ ...|..|...|...
T Consensus 19 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcC-eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 566666666554 2334567889999987643 24899999988764
No 191
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=27.57 E-value=34 Score=25.87 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=23.6
Q ss_pred ccCCCCCCCCCCceEeeCCcccc-hhhhhh
Q 010581 172 RCRSCGYPITEHEFSLSGKDPYH-KSCFKE 200 (507)
Q Consensus 172 ~C~~C~~~L~~~~F~~~dg~pYC-k~CY~k 200 (507)
.|..|+..++..+-+.++|+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 47888888887788889999999 677654
No 192
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.39 E-value=41 Score=25.78 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=19.2
Q ss_pred CCcc-cchhhhhhhccccccccCCCcCC
Q 010581 189 GKDP-YHKSCFKELTHPKCEVCHQYIPT 215 (507)
Q Consensus 189 dg~p-YCk~CY~k~f~pkC~~C~k~I~~ 215 (507)
=+.. +|..|..+. .+|..|.++|..
T Consensus 43 CgH~~~C~~C~~~~--~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 43 CGHLVTCKQCAEAV--DKCPMCYTVITF 68 (75)
T ss_dssp SCCCCBCHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCHHHHHHHhhCC--CCCccCCceecC
Confidence 4555 788887653 789999999876
No 193
>3gor_A Putative metal-dependent hydrolase; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus}
Probab=27.03 E-value=39 Score=28.56 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHH-----HHHHHhCCCCCChhhhhh
Q 010581 383 RLLTGAILAHELMH-----GWLRLKGYRNLNPEVEEG 414 (507)
Q Consensus 383 rl~~g~ilAHE~mH-----awlrl~g~~~l~~~vEEG 414 (507)
..+...++.|+.-| +|||+.|+..||--|+.|
T Consensus 121 ~~~l~~~~~H~~hHrGQi~~~lR~lG~~~~p~~~~rg 157 (157)
T 3gor_A 121 AQFLQLAMDHEIHHKGQLFVYVRGMGHTDLPLFVKRG 157 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccccCC
Confidence 34566778899988 699999998888777765
No 194
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=26.95 E-value=48 Score=29.68 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCCCchh--hHHHHHHHHHHhCHHHHHHHHHhhCC
Q 010581 472 ASPAYGE--GFRIANAAVNKYGLRRTLEHIRLTGN 504 (507)
Q Consensus 472 ~s~vYGd--GfR~~~~a~~~~gl~~~l~~i~~~g~ 504 (507)
+||.||+ +||.+++.+++ ++..+|+.|+..+.
T Consensus 126 ~DPy~~~~~~f~~~~~~I~~-~~~~ll~~l~~~~~ 159 (161)
T 3jvi_A 126 PDPYYGGEKGFHRVIDILED-ACENLIIKLEEGKL 159 (161)
T ss_dssp CCCC--CHHHHHHHHHHHHH-HHHHHHHHHHHSSC
T ss_pred cCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhccC
Confidence 5788887 89999998876 57888888876543
No 195
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Probab=26.80 E-value=23 Score=34.13 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q 010581 387 GAILAHELMHGWLRL 401 (507)
Q Consensus 387 g~ilAHE~mHawlrl 401 (507)
-.++.||+|||-=..
T Consensus 121 ~g~i~HEl~HaLGf~ 135 (235)
T 3lq0_A 121 HGTILHALMHAIGFY 135 (235)
T ss_dssp HHHHHHHHHHHHHBC
T ss_pred cchHHHHHHHHhccc
Confidence 479999999995443
No 196
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=26.62 E-value=39 Score=29.99 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=33.7
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f---~pkC~~C~k~I~~~ 216 (507)
|.|..|...+.+. ....-|..||..|..+.+ ..+|..|...|..+
T Consensus 19 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 6777887777653 445678899999998754 34899999988764
No 197
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=26.42 E-value=31 Score=36.75 Aligned_cols=22 Identities=36% Similarity=0.224 Sum_probs=18.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHH
Q 010581 379 YGLPRLLTGAILAHELMHGWLR 400 (507)
Q Consensus 379 ~GLPrl~~g~ilAHE~mHawlr 400 (507)
.||...-..+|||||+.|.-.+
T Consensus 322 ~~l~~~El~aVlaHElgH~~~~ 343 (482)
T 4aw6_A 322 QGCKNEEVLAVLGHELGHWKLG 343 (482)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHHcc
Confidence 4789999999999999997544
No 198
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=26.39 E-value=27 Score=31.33 Aligned_cols=15 Identities=40% Similarity=0.403 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 010581 386 TGAILAHELMHGWLRL 401 (507)
Q Consensus 386 ~g~ilAHE~mHawlrl 401 (507)
...+++||++|| |-|
T Consensus 112 ~~~v~~HE~GHa-lGl 126 (163)
T 1i76_A 112 LFLVAAHEFGHS-LGL 126 (163)
T ss_dssp HHHHHHHHHHHH-HTB
T ss_pred hhhhhHHHhhhh-hcC
Confidence 468999999999 444
No 199
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=26.29 E-value=57 Score=22.88 Aligned_cols=24 Identities=21% Similarity=0.702 Sum_probs=13.2
Q ss_pred Ccccchhhhhhh--ccccccccCCCc
Q 010581 190 KDPYHKSCFKEL--THPKCEVCHQYI 213 (507)
Q Consensus 190 g~pYCk~CY~k~--f~pkC~~C~k~I 213 (507)
+..||..|..+. ....|..|.+.|
T Consensus 28 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 28 GHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 445566665442 234577776655
No 200
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=26.05 E-value=34 Score=28.40 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=31.8
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCCcCCC
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPTN 216 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f---~pkC~~C~k~I~~~ 216 (507)
+.|..|...+.+ .....-|..||..|..+.. ...|..|...+...
T Consensus 24 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 567777666654 3334577889999987643 46899999988753
No 201
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=26.01 E-value=27 Score=31.23 Aligned_cols=12 Identities=33% Similarity=0.257 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHH
Q 010581 386 TGAILAHELMHG 397 (507)
Q Consensus 386 ~g~ilAHE~mHa 397 (507)
...|++||++||
T Consensus 113 ~~~v~~HEiGHa 124 (165)
T 1hv5_A 113 LLQVAAHEFGHV 124 (165)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHhHhh
Confidence 468999999998
No 202
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=25.80 E-value=19 Score=31.72 Aligned_cols=45 Identities=16% Similarity=0.400 Sum_probs=32.5
Q ss_pred CcccCCCCCCCCCCceEeeCCcccchhhhhhhcc---ccccccCCCcCC
Q 010581 170 CFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTH---PKCEVCHQYIPT 215 (507)
Q Consensus 170 CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~---pkC~~C~k~I~~ 215 (507)
=|.|..|...+... ....-|..||..|..+... ..|..|.+.|..
T Consensus 31 ~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 31 KYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 36778887776653 4456788999999887543 589999887643
No 203
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=25.79 E-value=15 Score=32.86 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=23.7
Q ss_pred CCCCchhhHHHHHHHHHHhCHHHHHHHHHhh
Q 010581 472 ASPAYGEGFRIANAAVNKYGLRRTLEHIRLT 502 (507)
Q Consensus 472 ~s~vYGdGfR~~~~a~~~~gl~~~l~~i~~~ 502 (507)
+||.||++||.+++.+++ ++..+|+.|+.+
T Consensus 123 ~DP~~~~~f~~v~~~I~~-~~~~ll~~l~~~ 152 (156)
T 2gi4_A 123 PDPWYSGNFDETYKILSL-ACKNLLVFLSKH 152 (156)
T ss_dssp CHHHHTSCSHHHHHHHHH-HHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 568888889999998876 477778888765
No 204
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Probab=25.57 E-value=32 Score=34.50 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHH
Q 010581 385 LTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYM 422 (507)
Q Consensus 385 ~~g~ilAHE~mHawlrl~-g--~~~l~~~vEEG~Cq~~a~~ 422 (507)
...-|+||||+|+..--. | |.+=+=.+-|++.-+++-+
T Consensus 133 ~~lDVv~HE~tHGVt~~~agL~y~~eSGaLnEs~SDifG~~ 173 (301)
T 1u4g_A 133 VSLDVAAHEVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEA 173 (301)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred cccceeeeccccceeccccCccccCCccchhHHHHHHHHHH
Confidence 467999999999998764 3 3333567889999999854
No 205
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Probab=25.47 E-value=41 Score=34.72 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHH
Q 010581 384 LLTGAILAHELMHGW 398 (507)
Q Consensus 384 l~~g~ilAHE~mHaw 398 (507)
+.+..++||||+|-+
T Consensus 137 ~~~a~t~AHElGHnl 151 (397)
T 3k7n_A 137 SLVASTITHELGHNL 151 (397)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHc
Confidence 567888999999975
No 206
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}
Probab=25.05 E-value=42 Score=34.96 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=16.4
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010581 374 AILVLYGLPRLLTGAILAHELMHGW 398 (507)
Q Consensus 374 ~Ilvl~GLPrl~~g~ilAHE~mHaw 398 (507)
+|.-.++---+.+..|+||||+|-+
T Consensus 132 gv~~d~~~~~~~~a~t~AHElGHnl 156 (422)
T 3k7l_A 132 AVVQDYSSRTRMVAITMAHEMGHNL 156 (422)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEeecCCcchhhhHHHHHHHHHHc
Confidence 3433343223567888999999975
No 207
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=24.36 E-value=42 Score=31.03 Aligned_cols=47 Identities=11% Similarity=0.001 Sum_probs=32.6
Q ss_pred CCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCCcCC
Q 010581 168 PNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPT 215 (507)
Q Consensus 168 p~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f---~pkC~~C~k~I~~ 215 (507)
|.-|.|..|...+.+ ......|..||+.|-.+.+ +..|..|++++..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 445777777776665 4555678999998876533 3458888887764
No 208
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=23.73 E-value=59 Score=24.02 Aligned_cols=26 Identities=27% Similarity=0.689 Sum_probs=18.5
Q ss_pred Ccccchhhhhhh--ccccccccCCCcCC
Q 010581 190 KDPYHKSCFKEL--THPKCEVCHQYIPT 215 (507)
Q Consensus 190 g~pYCk~CY~k~--f~pkC~~C~k~I~~ 215 (507)
+..||..|..+. ....|..|...|..
T Consensus 36 ~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 36 MHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp SCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 456788887653 25679999888765
No 209
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.55 E-value=54 Score=23.15 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=16.7
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhh
Q 010581 171 FRCRSCGYPITEHEFSLSGKDPYHKSCFKEL 201 (507)
Q Consensus 171 F~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~ 201 (507)
+.|..|...+... ....=+..||..|..+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-VIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSSC-CCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCcc-EeCCCCCccCHHHHHHH
Confidence 3455555544432 22345667888887664
No 210
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=22.69 E-value=41 Score=34.28 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHH
Q 010581 384 LLTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYM 422 (507)
Q Consensus 384 l~~g~ilAHE~mHawlrl~-g--~~~l~~~vEEG~Cq~~a~~ 422 (507)
....-|+||||+|+..--. | |.+=+=.+-|++--+++.+
T Consensus 154 ~~~lDVv~HEltHGVt~~~agL~Y~~eSGaLNEs~SDifG~~ 195 (341)
T 2vqx_A 154 TIAIDVVGHALAHGVTESEAGLIYFQQAGALNESLSDVFGSL 195 (341)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccceecccCCccccCCCcchhhHHHHHHHHH
Confidence 3456899999999998775 3 3333567889999998765
No 211
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=22.43 E-value=32 Score=31.01 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=10.0
Q ss_pred HHHHHHHHHHH
Q 010581 387 GAILAHELMHG 397 (507)
Q Consensus 387 g~ilAHE~mHa 397 (507)
-.|++||++||
T Consensus 115 ~~~~~HE~gH~ 125 (167)
T 3ayu_A 115 FLVAAHAFGHA 125 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehhhhhHHh
Confidence 48999999998
No 212
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=22.38 E-value=31 Score=33.47 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 010581 386 TGAILAHELMHG 397 (507)
Q Consensus 386 ~g~ilAHE~mHa 397 (507)
.-.|++||++||
T Consensus 195 l~~va~HEiGHa 206 (255)
T 1slm_A 195 LFLVAAHEIGHS 206 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhhhHHHHHHH
Confidence 358999999998
No 213
>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease, alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas SP} PDB: 3nqy_B 3nqz_B
Probab=21.98 E-value=41 Score=33.81 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHH
Q 010581 384 LLTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYM 422 (507)
Q Consensus 384 l~~g~ilAHE~mHawlrl~-g--~~~l~~~vEEG~Cq~~a~~ 422 (507)
+...-|+||||+|+..--. | |.+=+-.+-|++--+++-+
T Consensus 133 ~~slDVv~HE~tHGvt~~~a~l~y~~esGaLnEs~SDifg~~ 174 (306)
T 3nqx_A 133 LVSLDVSAHEVSHGFTEQNSGLIYNGKPGGLNEAFSDMAGEA 174 (306)
T ss_dssp SCCHHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhccccccCCCCCccCCCCCcccchHHHHHHHH
Confidence 3467899999999998754 3 2222456889999999855
No 214
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=21.76 E-value=37 Score=30.27 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q 010581 386 TGAILAHELMHG 397 (507)
Q Consensus 386 ~g~ilAHE~mHa 397 (507)
.-.|++||++||
T Consensus 108 ~~~~~~HE~GH~ 119 (159)
T 1y93_A 108 LFLTAVHEIGHS 119 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhhhhhhhh
Confidence 458999999999
No 215
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=21.73 E-value=24 Score=33.13 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=22.2
Q ss_pred CcccCCCCCccccCCceeEecCCccccchhhhh
Q 010581 242 TSRCCSCERLESWNTRYYSLEDGRSLCLECMES 274 (507)
Q Consensus 242 CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~s 274 (507)
--+|..|+-..+ .....+.||+.+|..|+..
T Consensus 172 ~~~C~~CGE~~~--~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTY--EADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEE--GGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchh--hcceeeeCCcEEChhhhcc
Confidence 356999987443 2334566899999999865
No 216
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=21.69 E-value=57 Score=34.93 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 010581 383 RLLTGAILAHELMHGW 398 (507)
Q Consensus 383 rl~~g~ilAHE~mHaw 398 (507)
.+.+..++||||+|-+
T Consensus 131 ~~~~A~t~AHELGHnL 146 (510)
T 3g5c_A 131 TDLMAVTLAQSLAHNI 146 (510)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHc
Confidence 4678899999999975
No 217
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.30 E-value=18 Score=30.58 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=6.7
Q ss_pred CCCCCCCCcc
Q 010581 144 KVCGGCNCDI 153 (507)
Q Consensus 144 ~~C~~C~k~I 153 (507)
..|+.|+.++
T Consensus 33 ~~CP~Cq~eL 42 (101)
T 2jne_A 33 LHCPQCQHVL 42 (101)
T ss_dssp CBCSSSCSBE
T ss_pred ccCccCCCcc
Confidence 4677777665
Done!