Query 010583
Match_columns 507
No_of_seqs 295 out of 1742
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 5E-134 1E-138 1043.8 27.7 466 1-494 1-479 (785)
2 PTZ00130 heat shock protein 90 100.0 9E-113 2E-117 946.2 35.9 459 1-490 1-462 (814)
3 COG0326 HtpG Molecular chapero 100.0 2E-109 5E-114 893.4 31.2 364 76-496 3-369 (623)
4 PTZ00272 heat shock protein 83 100.0 2E-106 4E-111 892.9 37.3 405 78-496 3-407 (701)
5 KOG0019 Molecular chaperone (H 100.0 6E-100 1E-104 808.4 23.2 351 76-496 33-384 (656)
6 PRK05218 heat shock protein 90 100.0 4.5E-89 9.7E-94 750.6 33.1 355 77-496 3-361 (613)
7 PRK14083 HSP90 family protein; 100.0 2E-87 4.3E-92 733.8 32.2 335 79-496 2-341 (601)
8 PF00183 HSP90: Hsp90 protein; 100.0 7.1E-64 1.5E-68 542.4 10.9 232 259-496 1-234 (531)
9 PF13589 HATPase_c_3: Histidin 99.7 1.2E-17 2.7E-22 151.6 7.2 101 98-225 1-104 (137)
10 TIGR00585 mutl DNA mismatch re 99.5 6.7E-14 1.4E-18 143.4 10.4 162 95-285 17-193 (312)
11 COG0323 MutL DNA mismatch repa 99.4 3.4E-13 7.4E-18 150.4 8.3 145 97-276 20-182 (638)
12 COG1389 DNA topoisomerase VI, 99.3 6.1E-12 1.3E-16 132.9 11.4 135 102-257 38-184 (538)
13 PRK04184 DNA topoisomerase VI 99.2 6.3E-11 1.4E-15 129.5 13.6 152 102-277 38-203 (535)
14 PRK00095 mutL DNA mismatch rep 99.2 2.5E-11 5.4E-16 135.3 10.7 153 95-276 17-180 (617)
15 TIGR01052 top6b DNA topoisomer 99.1 5.3E-10 1.2E-14 121.1 12.9 153 102-277 30-194 (488)
16 PRK14868 DNA topoisomerase VI 99.0 1.1E-09 2.3E-14 123.0 10.8 149 102-275 48-207 (795)
17 KOG1979 DNA mismatch repair pr 98.7 4.2E-08 9E-13 106.5 8.2 157 96-285 23-198 (694)
18 PRK14867 DNA topoisomerase VI 98.6 1.2E-07 2.7E-12 105.9 10.7 149 103-275 39-198 (659)
19 PRK05559 DNA topoisomerase IV 98.6 1.3E-07 2.7E-12 106.2 8.9 162 100-285 37-210 (631)
20 PF02518 HATPase_c: Histidine 98.5 7.7E-08 1.7E-12 82.7 4.6 81 102-209 7-87 (111)
21 KOG1978 DNA mismatch repair pr 98.5 2E-07 4.3E-12 103.2 7.0 161 92-283 12-190 (672)
22 TIGR01055 parE_Gneg DNA topois 98.5 2.5E-07 5.5E-12 103.6 7.8 162 100-286 30-204 (625)
23 smart00433 TOP2c Topoisomerase 98.4 2.6E-07 5.7E-12 103.0 6.2 155 104-285 5-174 (594)
24 TIGR01059 gyrB DNA gyrase, B s 98.3 1.2E-06 2.5E-11 98.9 7.6 154 102-283 32-197 (654)
25 PRK05644 gyrB DNA gyrase subun 98.3 1.1E-06 2.3E-11 98.9 7.2 156 102-285 39-208 (638)
26 PRK14939 gyrB DNA gyrase subun 98.3 1.8E-06 3.9E-11 98.4 8.9 155 102-286 39-209 (756)
27 cd00075 HATPase_c Histidine ki 97.6 0.00016 3.5E-09 58.1 6.9 86 103-215 3-92 (103)
28 KOG1977 DNA mismatch repair pr 97.5 4.7E-05 1E-09 84.8 2.0 125 100-252 21-149 (1142)
29 PRK10755 sensor protein BasS/P 97.4 0.00017 3.7E-09 73.7 4.7 101 103-255 250-350 (356)
30 TIGR02938 nifL_nitrog nitrogen 97.3 0.0004 8.7E-09 72.5 6.6 80 102-206 389-468 (494)
31 TIGR02916 PEP_his_kin putative 97.3 0.00029 6.3E-09 79.4 5.5 74 102-206 581-654 (679)
32 smart00387 HATPase_c Histidine 97.3 0.00047 1E-08 56.3 5.3 81 103-210 8-88 (111)
33 PRK10549 signal transduction h 97.2 0.00048 1E-08 72.6 5.9 62 136-207 372-433 (466)
34 TIGR01386 cztS_silS_copS heavy 97.2 0.00054 1.2E-08 71.5 6.2 83 137-253 374-456 (457)
35 PRK11100 sensory histidine kin 97.2 0.00092 2E-08 70.0 7.7 102 103-254 371-472 (475)
36 PRK11086 sensory histidine kin 97.2 0.00091 2E-08 71.7 7.4 53 103-169 436-488 (542)
37 TIGR01058 parE_Gpos DNA topois 97.1 0.0017 3.7E-08 73.5 9.6 158 103-286 37-207 (637)
38 PRK10604 sensor protein RstB; 97.0 0.00067 1.5E-08 72.1 4.3 76 103-206 322-397 (433)
39 TIGR02966 phoR_proteo phosphat 96.9 0.0012 2.7E-08 65.1 5.1 78 103-206 232-309 (333)
40 PRK10364 sensor protein ZraS; 96.9 0.0018 3.8E-08 69.0 6.3 51 103-169 351-401 (457)
41 PRK15347 two component system 96.8 0.0012 2.7E-08 75.9 5.3 50 103-169 516-565 (921)
42 PRK11006 phoR phosphate regulo 96.8 0.0023 4.9E-08 67.7 6.4 79 102-206 319-397 (430)
43 PRK11466 hybrid sensory histid 96.8 0.0018 4E-08 74.7 6.1 86 104-220 565-654 (914)
44 PRK11360 sensory histidine kin 96.8 0.0019 4.2E-08 69.0 5.8 51 103-169 503-554 (607)
45 PRK10815 sensor protein PhoQ; 96.7 0.0016 3.6E-08 70.8 5.0 97 104-255 382-478 (485)
46 PRK15053 dpiB sensor histidine 96.7 0.0024 5.2E-08 69.2 6.2 79 104-207 436-514 (545)
47 COG0187 GyrB Type IIA topoisom 96.7 0.0072 1.6E-07 67.5 9.3 162 101-287 37-211 (635)
48 PLN03128 DNA topoisomerase 2; 96.7 0.0086 1.9E-07 71.6 10.5 163 102-287 54-235 (1135)
49 TIGR02956 TMAO_torS TMAO reduc 96.6 0.0034 7.3E-08 72.8 7.0 86 103-217 582-672 (968)
50 PHA02569 39 DNA topoisomerase 96.6 0.0024 5.2E-08 71.8 5.5 157 103-286 48-223 (602)
51 PLN03237 DNA topoisomerase 2; 96.6 0.0066 1.4E-07 73.6 9.4 161 102-287 79-260 (1465)
52 PRK09470 cpxA two-component se 96.5 0.0038 8.3E-08 65.5 5.8 73 103-203 356-428 (461)
53 PTZ00108 DNA topoisomerase 2-l 96.4 0.011 2.3E-07 71.8 9.4 163 102-286 59-241 (1388)
54 PRK09467 envZ osmolarity senso 96.3 0.0048 1E-07 64.6 5.0 33 137-169 350-382 (435)
55 PRK09303 adaptive-response sen 96.2 0.01 2.2E-07 62.3 7.0 83 97-207 266-352 (380)
56 PRK11091 aerobic respiration c 96.1 0.035 7.6E-07 63.4 11.2 100 97-222 392-499 (779)
57 TIGR03785 marine_sort_HK prote 96.1 0.009 1.9E-07 68.3 6.2 80 103-208 600-679 (703)
58 PRK10337 sensor protein QseC; 96.0 0.0099 2.1E-07 62.6 5.8 70 104-206 356-425 (449)
59 PRK13837 two-component VirA-li 96.0 0.033 7.1E-07 64.6 10.3 89 102-222 562-669 (828)
60 COG3290 CitA Signal transducti 96.0 0.016 3.4E-07 64.0 7.2 74 102-203 429-502 (537)
61 PRK03660 anti-sigma F factor; 96.0 0.019 4E-07 51.8 6.5 48 102-162 41-88 (146)
62 PRK10618 phosphotransfer inter 95.8 0.014 3E-07 68.6 6.3 93 103-223 568-667 (894)
63 TIGR01925 spIIAB anti-sigma F 95.6 0.02 4.3E-07 51.1 5.0 47 102-161 41-87 (137)
64 COG4191 Signal transduction hi 95.5 0.02 4.3E-07 63.7 5.6 55 103-171 500-554 (603)
65 PRK10490 sensor protein KdpD; 95.5 0.027 5.9E-07 66.1 7.1 77 102-206 780-856 (895)
66 PTZ00109 DNA gyrase subunit b; 95.2 0.058 1.3E-06 62.9 8.4 162 102-286 131-357 (903)
67 PRK11107 hybrid sensory histid 95.1 0.036 7.9E-07 63.8 6.4 92 103-221 411-511 (919)
68 PRK09835 sensor kinase CusS; P 95.0 0.035 7.7E-07 58.7 5.5 33 137-169 396-428 (482)
69 PRK10841 hybrid sensory kinase 94.9 0.042 9.1E-07 64.8 6.5 91 103-220 565-659 (924)
70 COG0642 BaeS Signal transducti 94.9 0.04 8.6E-07 53.2 5.2 49 102-167 230-278 (336)
71 PRK09959 hybrid sensory histid 94.9 0.034 7.4E-07 66.4 5.6 86 102-216 830-924 (1197)
72 PF13581 HATPase_c_2: Histidin 94.5 0.077 1.7E-06 46.5 5.5 81 102-212 33-113 (125)
73 PRK11073 glnL nitrogen regulat 94.0 0.082 1.8E-06 53.6 5.4 51 102-167 239-299 (348)
74 PRK04069 serine-protein kinase 93.9 0.1 2.2E-06 48.8 5.3 88 102-214 44-131 (161)
75 TIGR01924 rsbW_low_gc serine-p 93.9 0.074 1.6E-06 49.7 4.3 88 102-214 44-131 (159)
76 COG5000 NtrY Signal transducti 93.6 0.14 3E-06 57.5 6.4 55 104-169 604-660 (712)
77 PRK10547 chemotaxis protein Ch 93.4 0.3 6.4E-06 56.0 9.0 56 105-167 390-448 (670)
78 PRK13557 histidine kinase; Pro 93.2 0.16 3.4E-06 54.3 6.0 20 150-169 326-345 (540)
79 KOG0787 Dehydrogenase kinase [ 92.7 0.44 9.6E-06 50.8 8.3 125 101-260 261-385 (414)
80 PRK13560 hypothetical protein; 92.2 0.15 3.2E-06 57.4 4.4 47 104-163 715-762 (807)
81 COG3920 Signal transduction hi 91.8 0.29 6.2E-06 48.5 5.4 48 103-163 125-174 (221)
82 COG0643 CheA Chemotaxis protei 90.9 0.23 5.1E-06 57.2 4.3 128 104-254 436-572 (716)
83 PRK10600 nitrate/nitrite senso 90.8 0.3 6.5E-06 54.0 4.8 27 137-163 489-515 (569)
84 COG4251 Bacteriophytochrome (l 90.7 0.36 7.9E-06 54.5 5.3 72 139-222 658-735 (750)
85 PRK11644 sensory histidine kin 90.2 0.24 5.1E-06 54.4 3.5 43 104-163 414-456 (495)
86 COG4585 Signal transduction hi 90.1 0.19 4.1E-06 52.5 2.5 48 102-166 281-328 (365)
87 COG2172 RsbW Anti-sigma regula 88.4 1.5 3.1E-05 41.0 6.8 84 102-216 42-128 (146)
88 COG2972 Predicted signal trans 85.4 3.5 7.5E-05 44.8 8.7 56 98-167 348-405 (456)
89 COG2205 KdpD Osmosensitive K+ 82.7 2.4 5.2E-05 49.5 6.2 57 102-174 777-833 (890)
90 COG3850 NarQ Signal transducti 80.3 1.9 4.1E-05 48.1 4.2 43 104-163 485-527 (574)
91 PRK10935 nitrate/nitrite senso 78.8 2.1 4.6E-05 46.6 4.0 42 104-162 475-517 (565)
92 PRK13559 hypothetical protein; 78.1 2.4 5.1E-05 43.4 3.9 47 103-162 270-318 (361)
93 KOG1845 MORC family ATPases [C 78.1 1.8 4E-05 50.2 3.4 95 103-216 149-246 (775)
94 COG5002 VicK Signal transducti 75.1 4.7 0.0001 43.2 5.1 55 138-202 362-418 (459)
95 COG4192 Signal transduction hi 67.4 8.1 0.00018 42.8 4.9 51 102-169 566-619 (673)
96 COG2865 Predicted transcriptio 65.7 7.1 0.00015 43.1 4.2 88 95-206 265-356 (467)
97 KOG0355 DNA topoisomerase type 63.1 11 0.00024 44.1 5.2 124 103-252 56-192 (842)
98 COG4564 Signal transduction hi 48.1 20 0.00044 38.3 3.8 59 95-166 350-408 (459)
99 KOG1845 MORC family ATPases [C 42.7 21 0.00045 41.9 3.2 52 151-217 2-54 (775)
100 COG3851 UhpB Signal transducti 41.1 32 0.00069 37.3 4.0 26 136-161 429-454 (497)
101 TIGR00032 argG argininosuccina 28.7 1E+02 0.0022 33.5 5.5 50 136-210 211-260 (394)
102 PF14501 HATPase_c_5: GHKL dom 27.5 1.1E+02 0.0024 25.8 4.6 43 104-159 9-51 (100)
103 PRK13820 argininosuccinate syn 27.3 1.1E+02 0.0024 33.3 5.5 49 137-210 212-260 (394)
104 PRK04527 argininosuccinate syn 25.8 1.2E+02 0.0025 33.2 5.3 49 137-210 215-263 (400)
105 PRK00509 argininosuccinate syn 25.6 1.2E+02 0.0026 33.1 5.4 49 137-210 215-263 (399)
106 PLN00200 argininosuccinate syn 24.8 1.3E+02 0.0029 32.8 5.6 49 137-210 219-267 (404)
107 PF08163 NUC194: NUC194 domain 22.2 26 0.00057 38.0 -0.4 49 437-485 305-357 (394)
108 PF15144 DUF4576: Domain of un 21.9 1.6E+02 0.0034 25.3 4.2 23 84-117 44-66 (88)
109 PF03931 Skp1_POZ: Skp1 family 21.5 82 0.0018 24.8 2.4 38 448-485 5-58 (62)
110 COG5381 Uncharacterized protei 20.7 3.7E+02 0.008 25.8 6.8 83 103-202 66-149 (184)
111 cd01999 Argininosuccinate_Synt 20.1 1.9E+02 0.0041 31.4 5.5 49 137-210 212-260 (385)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-134 Score=1043.82 Aligned_cols=466 Identities=64% Similarity=1.027 Sum_probs=432.0
Q ss_pred CCccchhhHHHHHHHHHhcCCCcccccccccccccccCCCcchhcccCCCCCCCCCchhhhhhhhhhhh--------hhh
Q 010583 1 MRKWTIPSILLLLFLVALIPDQGRNIQAKAEDESDKLVDPPKVEEKLGAVPNGLSTDSDVAKREAESIS--------KRS 72 (507)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 72 (507)
|+.+++.+++||+.++++++++.+..++ .+++++|.+++|++|+.++++|++++|+ .|+
T Consensus 1 m~~~~lv~~~~L~~~~~l~ad~~~~~~~-------------~~ee~~~~~~e~sk~e~e~~~ree~si~lDgl~~~q~ke 67 (785)
T KOG0020|consen 1 MRKRTLVSVLLLFGFLFLLADDERKLHA-------------TAEEDLGDVTEGSKTEEEIGGREEESIQLDGLNVSQIKE 67 (785)
T ss_pred CcchhHHHHHHHHHHHHhcccccccccc-------------chhhhccccCCCCcchhhhccccchheecccccHHHHHH
Confidence 7888888888888877888777655543 4677799999999999999999999998 899
Q ss_pred hhccccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEE
Q 010583 73 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILS 152 (507)
Q Consensus 73 ~~~~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~ 152 (507)
+|+.+|+|.||++++|||+||+|+||+|+++||||||+||+||++|+|+++|+|+..+ +.+++++|+|..|++++.|+
T Consensus 68 lR~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L--~~~~el~ikIK~Dke~klLh 145 (785)
T KOG0020|consen 68 LRSKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVL--GETEELEIKIKADKEKKLLH 145 (785)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHh--CcCcceEEEEeechhhCeee
Confidence 9999999999999999999999999999999999999999999999999999999999 67899999999999999999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCC-----ccccccccceeeeeeecCEEEEEEeeCCCeeEEEEec
Q 010583 153 IRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDL-----NLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESK 227 (507)
Q Consensus 153 I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~-----~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~ 227 (507)
|+|+|||||++||++||||||+||+++|+++|+..++. ++||||||||||+|+|||+|+|+|+++++.||+|+|+
T Consensus 146 i~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESd 225 (785)
T KOG0020|consen 146 ITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESD 225 (785)
T ss_pred EecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeecc
Confidence 99999999999999999999999999999999865443 7999999999999999999999999999999999999
Q ss_pred CCCceEEEECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHh
Q 010583 228 ADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKA 307 (507)
Q Consensus 228 ~~~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~ 307 (507)
+. +|+|.++|++++++|||+|+|+|++++.+||++++++++|++||+||+|||++|.+|++++++|.+|+++..++.
T Consensus 226 an-~FsvseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~-- 302 (785)
T KOG0020|consen 226 AN-SFSVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDS-- 302 (785)
T ss_pred Cc-ceeeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeeccccccccccccc--
Confidence 87 999999999999999999999999999999999999999999999999999999999999999987765433210
Q ss_pred hhhhhhccccCCCcccccccccCCCcccccccccceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeee
Q 010583 308 EKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHF 387 (507)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~ 387 (507)
.++++ ..+||+++++||||||++++|+|+.+|+.+|||+|+|++|+++||..|||++++++ .+||+|+||
T Consensus 303 ----~ed~e----a~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds--~dPma~~HF 372 (785)
T KOG0020|consen 303 ----TEDKE----AAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDS--TDPMAYIHF 372 (785)
T ss_pred ----ccchh----hhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccc--cCccceeee
Confidence 00111 22344445569999999999999999999999999999999999999999999999 899999999
Q ss_pred eccccceeEEEEEeCCCCCcchhhhhccccccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcch
Q 010583 388 NAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHS 467 (507)
Q Consensus 388 ~~eg~~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~ 467 (507)
.+||+|+||+|||||+.+|.++|+.||++...+||||||||||+|+|.++||+||+||||||||||||||||||+||||+
T Consensus 373 ~aEGeVtFksiLyVP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHk 452 (785)
T KOG0020|consen 373 TAEGEVTFKSILYVPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFHDMMPKYLSFIKGVVDSDDLPLNVSRETLQQHK 452 (785)
T ss_pred eccccEEEEEEEEeCCCCchHHHHHhccccccceeEEEEEEEecchHHHHhHHHHHHHhhccCcCcCcccccHHHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 010583 468 SLKTIKKKLIRKALDMIRKIAEEDPDE 494 (507)
Q Consensus 468 ~l~~irk~l~~k~l~~l~~la~~~~~~ 494 (507)
+|++|||+|+||+||||+++|.+++++
T Consensus 453 llKvIkKKLvrK~LDmikKia~e~~~d 479 (785)
T KOG0020|consen 453 LLKVIKKKLVRKVLDMIKKIAGEKYDD 479 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccch
Confidence 999999999999999999999988775
No 2
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=8.5e-113 Score=946.20 Aligned_cols=459 Identities=47% Similarity=0.765 Sum_probs=387.2
Q ss_pred CCccchhhHHHHHHHHHhcCCCcccccccccccccccCCCcchhcccCCCCCCCCCchhhhhh--hhhhhhhhhhhcccc
Q 010583 1 MRKWTIPSILLLLFLVALIPDQGRNIQAKAEDESDKLVDPPKVEEKLGAVPNGLSTDSDVAKR--EAESISKRSLRNNAE 78 (507)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e 78 (507)
|+..+++.+.|++|+| |++++..+|+.- |..++++.+. |..+.-...|.+.+.. +.|.++ ++.|
T Consensus 1 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e 66 (814)
T PTZ00130 1 MKLNRVFFCAFVICAL-----QPNWVPQLCNVL--CESDEGKSEE--KEEKEEVKKDRDNIPEIEDGEKPT-----SGIE 66 (814)
T ss_pred Cccceeeeehhhhhhc-----CccchhhhCcee--ecCCCCcccC--CCCcchhhcccccCcccccCCCCC-----cccc
Confidence 5666666444444443 456677777766 7777776443 3334444566666554 333333 5678
Q ss_pred ceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCC
Q 010583 79 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGI 158 (507)
Q Consensus 79 ~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGi 158 (507)
+++||+|+++||+||+++|||++++|||||||||+|||+|+||++++++.++ +...++.|+|..|+++++|+|+||||
T Consensus 67 ~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~--~~~~~~~I~I~~D~~~~tLtI~DnGI 144 (814)
T PTZ00130 67 QHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL--GEEKKLEIRISANKEKNILSITDTGI 144 (814)
T ss_pred eeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhc--CCCCCceEEEEECCCCCEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999887 55667899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHhhhc-cCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEEC
Q 010583 159 GMTKEDLIKNLGTIAKSGTSAFVEKMQT-SGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISED 237 (507)
Q Consensus 159 GMT~edL~~~LgtIa~Sgk~~f~~~l~~-~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~ 237 (507)
|||++||.++|||||+||++.|+++++. +.+..+||||||||||||||||+|+|+||++++.+|.|+|+|+|.|+|.++
T Consensus 145 GMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y~I~e~ 224 (814)
T PTZ00130 145 GMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKFTIYKD 224 (814)
T ss_pred CCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcEEEEEC
Confidence 9999999999999999999999998874 345789999999999999999999999999888899999999999999998
Q ss_pred CCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhhhhhhhcccc
Q 010583 238 TWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSE 317 (507)
Q Consensus 238 ~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (507)
+++.+.+|||+|+|||+++..+|++.++|++||++||+||+|||+|++.++++++++.++..+.+ + + ..+++.
T Consensus 225 ~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~~--~----~-~~~~~~ 297 (814)
T PTZ00130 225 PRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEME--N----D-PNYDSV 297 (814)
T ss_pred CCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEccccccccccccccccccc--c----c-cccccc
Confidence 76666789999999999999999999999999999999999999999766555444432211000 0 0 001111
Q ss_pred CCCcccccccccCCCcccccccccceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccceeEE
Q 010583 318 SESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKA 397 (507)
Q Consensus 318 ~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f~~ 397 (507)
++ ++.+++++++|++++++++|++||..+|||+|+|++|++++|.+|||+++++| ++||+|+||++||+++|+|
T Consensus 298 e~----~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~--~dPl~~iH~~~Eg~~~~~~ 371 (814)
T PTZ00130 298 KV----EETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFN--DEPLYHIHFFAEGEIEFKC 371 (814)
T ss_pred cc----cccccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCc--cCCceeeeeccCCCeeEEE
Confidence 11 11112346678888888999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEEeCCCCCcchhhhhccccccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHHHH
Q 010583 398 VLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLI 477 (507)
Q Consensus 398 llyip~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~l~ 477 (507)
|||||+.+|+++|. + ...+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|+
T Consensus 372 LLYIP~~ap~~~~~-~-~~~~~~ikLYvrrVfI~d~~~dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~ 449 (814)
T PTZ00130 372 LIYIPSRAPSINDH-L-FTKQNSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIV 449 (814)
T ss_pred EEEecCCCccchhh-h-hhccCceEEEEeeEEeecchhhhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHH
Confidence 99999999998765 1 235789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 010583 478 RKALDMIRKIAEE 490 (507)
Q Consensus 478 ~k~l~~l~~la~~ 490 (507)
+||++||.+|+++
T Consensus 450 kkil~~L~~l~~~ 462 (814)
T PTZ00130 450 RKILDTFRTLYKE 462 (814)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999984
No 3
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-109 Score=893.36 Aligned_cols=364 Identities=53% Similarity=0.925 Sum_probs=340.2
Q ss_pred cccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEE
Q 010583 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (507)
Q Consensus 76 ~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (507)
..|++.||+|+++||+||+|||||+|++|||||||||+|||+|+||.++++|.+. +..++++|+|.+|+++++|+|+|
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~--~~~~~~~I~i~~Dk~~kTLtI~D 80 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELG--EGDSDLRIRISFDKDNKTLTISD 80 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCcccc--CCCCCceEEEEEcccCCEEEEEe
Confidence 4688999999999999999999999999999999999999999999999999987 56678999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchhHHHhhhcc-CCCccccccccceeeeeeecCEEEEEEeeCC-CeeEEEEecCCCceE
Q 010583 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-GDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQYVWESKADGAFA 233 (507)
Q Consensus 156 NGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~-~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~-d~~~~W~s~~~~~f~ 233 (507)
||||||++|++++|||||+|||++|++.+.+. .+.++||||||||||||||||+|+|+|++++ +.++.|+|+|+|+|+
T Consensus 81 NGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~yt 160 (623)
T COG0326 81 NGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYT 160 (623)
T ss_pred CCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceE
Confidence 99999999999999999999999999998754 3789999999999999999999999999986 578899999999999
Q ss_pred EEECCCCCCCC-CCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhhhhhh
Q 010583 234 ISEDTWNEPLG-RGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEE 312 (507)
Q Consensus 234 I~~~~~~~~~~-~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (507)
|+.++. .. +||+|+|||+++..+|++.++|+++|++||.||++||++.+++..+
T Consensus 161 v~~~~~---~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~---------------------- 215 (623)
T COG0326 161 VEDIDK---EPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKD---------------------- 215 (623)
T ss_pred EeeccC---CCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeecccc----------------------
Confidence 999753 34 6999999999999999999999999999999999999997643110
Q ss_pred hccccCCCcccccccccCCCcccccccccceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeecccc
Q 010583 313 TEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGD 392 (507)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~ 392 (507)
+ .+.+|+.+|..+|||+|+++++++++|.+||++++++| ++||.|+|+++||.
T Consensus 216 --------~-----------------~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~--~~Pl~~~h~~~EG~ 268 (623)
T COG0326 216 --------E-----------------EVIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDF--DDPLLWIHNKVEGR 268 (623)
T ss_pred --------c-----------------cchhHHHhccccCcccCChhhCChHHHHHHHHHhhccc--CCCeEEEecccccc
Confidence 0 02358999999999999999999999999999999999 99999999999999
Q ss_pred ceeEEEEEeCCCCCcchhhhhccccccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHH
Q 010583 393 VEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTI 472 (507)
Q Consensus 393 ~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~i 472 (507)
++|.+|||||..+|+|+|++ ..++++|||||||||||+|.+|||+||+||||||||+|||||||||+||+|++++.|
T Consensus 269 ~ey~~ll~iP~~aPfdl~~~---~~k~glkLYv~rVfI~Dd~~~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~I 345 (623)
T COG0326 269 LEYTALLFIPSKAPFDLFRR---DRKRGLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAI 345 (623)
T ss_pred eEEEEEEEccCCCCcccccc---cccCCcEEEEeeeEEeCChhhhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHH
Confidence 99999999999999999976 557899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccc
Q 010583 473 KKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 473 rk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
|+.|++||++||++||+++|++|.
T Consensus 346 rk~l~kkvl~~L~~La~~~~e~y~ 369 (623)
T COG0326 346 RKALTKKVLSMLEKLAKDDPEKYR 369 (623)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999999998775
No 4
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=2e-106 Score=892.94 Aligned_cols=405 Identities=51% Similarity=0.876 Sum_probs=353.8
Q ss_pred cceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECC
Q 010583 78 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRG 157 (507)
Q Consensus 78 e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNG 157 (507)
|+|+||||+++||+||+|||||++++|||||||||+|||+++||.+++++.++ +..+.+.|+|..|+++++|+|.|||
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~i~~d~~~~~L~I~DnG 80 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVL--GESPRLCIRVVPDKENKTLTVEDNG 80 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhc--CCCCceEEEEEEcCCCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999999887 4456789999999888999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEEC
Q 010583 158 IGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISED 237 (507)
Q Consensus 158 iGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~ 237 (507)
+|||++||.++||+||+||++.|+++++.+.+.++|||||||||||||||++|+|+||++++.+|.|+|+++|.|+|.++
T Consensus 81 iGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i~~~ 160 (701)
T PTZ00272 81 IGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITST 160 (701)
T ss_pred CCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEEEeC
Confidence 99999999999999999999999988865566789999999999999999999999999877899999999999999987
Q ss_pred CCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhhhhhhhcccc
Q 010583 238 TWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSE 317 (507)
Q Consensus 238 ~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (507)
+. ....+||+|+|||++++.+|++.++|+++|++||+||+|||+++..++...++++++++...++ + .++++.
T Consensus 161 ~~-~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~ 233 (701)
T PTZ00272 161 PE-SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKA-----D-EDGEEP 233 (701)
T ss_pred CC-CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhcccc-----c-cccccc
Confidence 63 4568999999999999999999999999999999999999999876655444332211111000 0 011111
Q ss_pred CCCcccccccccCCCcccccccccceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccceeEE
Q 010583 318 SESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKA 397 (507)
Q Consensus 318 ~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f~~ 397 (507)
.+.+..++++++++|++++++++|+|++||+++|||+|+|++|+++||.+|||+++++| ++||+|+||++||+++|+|
T Consensus 234 ~~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~--~~Pl~~ih~~~eg~~~~~~ 311 (701)
T PTZ00272 234 KVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDW--EDPAATKHFSVEGQLEFRS 311 (701)
T ss_pred ccccccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCc--CCCceeeeeccCCceeeEE
Confidence 22111122223456678888899999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEEeCCCCCcchhhhhccccccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHHHH
Q 010583 398 VLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLI 477 (507)
Q Consensus 398 llyip~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~l~ 477 (507)
|||||..+|+++|+. ....++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|+
T Consensus 312 llyiP~~~~~~~~~~--~~~~~~i~LY~~rVfI~d~~~~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~ 389 (701)
T PTZ00272 312 IMFVPKRAPFDMFEP--NKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIV 389 (701)
T ss_pred EEEeCCCCccchhhh--hhccCceEEEEeeEEEecchhhhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHH
Confidence 999999999999864 235789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccc
Q 010583 478 RKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 478 ~k~l~~l~~la~~~~~~~~ 496 (507)
+|+++||++||++ ++.|.
T Consensus 390 ~ki~~~l~~la~~-~~~y~ 407 (701)
T PTZ00272 390 KKCLEMFDEVAEN-KEDYK 407 (701)
T ss_pred HHHHHHHHHHhhC-HHHHH
Confidence 9999999999975 44443
No 5
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-100 Score=808.43 Aligned_cols=351 Identities=47% Similarity=0.862 Sum_probs=335.5
Q ss_pred cccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEE
Q 010583 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (507)
Q Consensus 76 ~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (507)
.+|+|.|||++++||+++++++||++++||||||+||+||++|+||.++++|+.+ .+++.|+|.+++++++|+|.|
T Consensus 33 ~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~----~~~l~I~i~~nk~~~tlti~D 108 (656)
T KOG0019|consen 33 PQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA----LPELEIRIITNKDKRTITIQD 108 (656)
T ss_pred cccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc----ccceeEEeccCCCcceEEEEe
Confidence 4589999999999999999999999999999999999999999999999999864 678999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchhHHHhhh-ccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEE
Q 010583 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ-TSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAI 234 (507)
Q Consensus 156 NGiGMT~edL~~~LgtIa~Sgk~~f~~~l~-~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I 234 (507)
+|||||++||.+||||||+||++.|+++++ ++.+.++||||||||||+||||++|+|+|++++++++.|++.++|+|+|
T Consensus 109 tGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~gs~~v 188 (656)
T KOG0019|consen 109 TGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRGSYEI 188 (656)
T ss_pred cCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCCceEE
Confidence 999999999999999999999999999999 5788899999999999999999999999999988899999999999999
Q ss_pred EECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhhhhhhhc
Q 010583 235 SEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETE 314 (507)
Q Consensus 235 ~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (507)
..++ ...+||.|+||||+++.+|+++.+|+++|+|||+||.|||++|++
T Consensus 189 ~~~~---~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~e---------------------------- 237 (656)
T KOG0019|consen 189 AEAS---GLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNGE---------------------------- 237 (656)
T ss_pred eecc---CccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhhh----------------------------
Confidence 9974 389999999999998889999999999999999999999999962
Q ss_pred cccCCCcccccccccCCCcccccccccceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccce
Q 010583 315 KSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVE 394 (507)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~ 394 (507)
.+|..+|||+|+|++||.+||.+|||+++++| ++||++.||++||+++
T Consensus 238 ------------------------------k~N~tKpiW~rnp~dit~eey~eFYksl~ndw--~d~lav~hf~~eg~le 285 (656)
T KOG0019|consen 238 ------------------------------RVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDW--DDPLYVLHFKTDGPLS 285 (656)
T ss_pred ------------------------------hhhccCcccccCchhhhHHHHHHHHHhhcccc--cchhhHhhhccccceE
Confidence 38999999999999999999999999999999 9999999999999999
Q ss_pred eEEEEEeCCCCCcchhhhhccccccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHH
Q 010583 395 FKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKK 474 (507)
Q Consensus 395 f~~llyip~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk 474 (507)
|++|||||+++|+++|+. .++.++++||+|||||+|+|.+++|+||+||+|||||+|||||+|||+||++++|++|||
T Consensus 286 frail~vP~rap~~lF~~--~kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk 363 (656)
T KOG0019|consen 286 IRSIFYIPKRAPNSMFDM--RKKKNGIKLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRK 363 (656)
T ss_pred EEEEEeccccCcchhhhh--hhccCceEEEEEEEecCchhHHHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHH
Confidence 999999999999999987 477899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccc
Q 010583 475 KLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 475 ~l~~k~l~~l~~la~~~~~~~~ 496 (507)
.|++|+++||.++| +++++|.
T Consensus 364 ~l~~k~l~~~~e~a-~d~e~Y~ 384 (656)
T KOG0019|consen 364 VLPQKILEMFQDLA-KDAEKYK 384 (656)
T ss_pred HHHHHHHHHHHHHh-hhHHHHH
Confidence 99999999999999 5555554
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=4.5e-89 Score=750.63 Aligned_cols=355 Identities=50% Similarity=0.874 Sum_probs=330.8
Q ss_pred ccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEEC
Q 010583 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (507)
Q Consensus 77 ~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (507)
.|+++||+|+++||+||+++||++|++|||||||||+|||+++|+.+++++.+. ....+++|+|.+++++++|+|+||
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~--~~~~~~~I~I~~d~~~~~i~I~Dn 80 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALY--EGDGDLKIRISFDKEARTLTISDN 80 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCcccc--CCCCCcEEEEEEcCCCCeEEEEEC
Confidence 589999999999999999999999999999999999999999999999998876 455678999999988889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHhhhcc--CCCccccccccceeeeeeecCEEEEEEeeCC--CeeEEEEecCCCce
Q 010583 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND--DKQYVWESKADGAF 232 (507)
Q Consensus 157 GiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~--~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~--d~~~~W~s~~~~~f 232 (507)
|+|||++|+.++|++||+||++.|.++++.. .+.++||+|||||||+||||++|+|+||+.+ +.++.|.+.+++.|
T Consensus 81 G~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~ 160 (613)
T PRK05218 81 GIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEY 160 (613)
T ss_pred CCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCcee
Confidence 9999999999999999999999999888532 3578999999999999999999999999865 46899999999999
Q ss_pred EEEECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhhhhhh
Q 010583 233 AISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEE 312 (507)
Q Consensus 233 ~I~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (507)
++.+.+ ...+||+|+|+|++++.+|++.++|+++|++||+|+++||++++.
T Consensus 161 ~i~~~~---~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~-------------------------- 211 (613)
T PRK05218 161 TIEEIE---KEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKE-------------------------- 211 (613)
T ss_pred EEeECC---CCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEecc--------------------------
Confidence 999863 347999999999999999999999999999999999999999531
Q ss_pred hccccCCCcccccccccCCCcccccccccceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeecccc
Q 010583 313 TEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGD 392 (507)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~ 392 (507)
+|+.+|+.+|+|+++++++++++|..||+.++++| .+||+++|+.++|+
T Consensus 212 -----------------------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~--~~pl~~i~~~~e~~ 260 (613)
T PRK05218 212 -----------------------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDF--DDPLFWIHNNVEGP 260 (613)
T ss_pred -----------------------------cceeecCCccceecCCccccHHHHHHHhhhhcccc--cCCcEEEEcccCCc
Confidence 26789999999999999999999999999999998 89999999999999
Q ss_pred ceeEEEEEeCCCCCcchhhhhccccccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHH
Q 010583 393 VEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTI 472 (507)
Q Consensus 393 ~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~i 472 (507)
+.|+|+||||..+|+++|++ ...++++||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++|
T Consensus 261 ~~~~gll~iP~~~~~~~~~~---~~~~~~~lyvn~v~I~d~~~~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i 337 (613)
T PRK05218 261 FEYTGLLYIPKKAPFDLFNR---DRKGGLKLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKI 337 (613)
T ss_pred eEEEEEEEeCCCCccchhhh---cccccEEEEECcEEeeCchhhhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHH
Confidence 99999999999999988854 467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccc
Q 010583 473 KKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 473 rk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
|+.|++|+++||.+||+++++.|.
T Consensus 338 ~~~l~~kv~~~l~~la~~d~~~y~ 361 (613)
T PRK05218 338 RKAITKKVLDELEKLAKNDREKYE 361 (613)
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHH
Confidence 999999999999999999988775
No 7
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=2e-87 Score=733.77 Aligned_cols=335 Identities=28% Similarity=0.485 Sum_probs=302.1
Q ss_pred ceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEE-cCCccEEEEEECC
Q 010583 79 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL-DKEKKILSIRDRG 157 (507)
Q Consensus 79 ~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~-d~~~~~L~I~DNG 157 (507)
.++||+|+++||++|+++||++|.+|||||||||+||++++|+.. + ..+.+|+|.+ +.++++|+|+|||
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~---~-------~~~~~I~I~~~d~~~~~l~I~DnG 71 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD---P-------TAPGRIRIELTDAGGGTLIVEDNG 71 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC---C-------CCCceEEEEEccCCCcEEEEEeCC
Confidence 579999999999999999999999999999999999999877531 1 2245777777 7788999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeC-CCeeEEEEecCCCceEEEE
Q 010583 158 IGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISE 236 (507)
Q Consensus 158 iGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~-~d~~~~W~s~~~~~f~I~~ 236 (507)
+|||.+++.++|++||+||++.|. +. ..+.++|||||||||||||||++|+|.|++. ++.++.|++.++|.|+|..
T Consensus 72 iGmt~eel~~~l~~ig~S~k~~~~--~~-~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~ 148 (601)
T PRK14083 72 IGLTEEEVHEFLATIGRSSKRDEN--LG-FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRK 148 (601)
T ss_pred CCCCHHHHHHHHhhhccchhhhhh--hc-ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEe
Confidence 999999999999999999998753 11 2346799999999999999999999999997 4679999999999999998
Q ss_pred CCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhhhhhhhccc
Q 010583 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKS 316 (507)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (507)
.+ .....+||+|+|+++++..+|++.++|++++++||.||+|||+++++
T Consensus 149 ~~-~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~------------------------------ 197 (601)
T PRK14083 149 LE-TERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE------------------------------ 197 (601)
T ss_pred CC-CCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc------------------------------
Confidence 53 34568999999999999999999999999999999999999999641
Q ss_pred cCCCcccccccccCCCcccccccccceeecccCCCCccCCCCCCC--HHHHHHHHHHhhCCCCCCCCceeeeeeccccce
Q 010583 317 ESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVT--EEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVE 394 (507)
Q Consensus 317 ~~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN~~~~iW~r~~~~v~--~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~ 394 (507)
.++||+++|||+|++++++ ++||.+|||++++ ++||+|+|+++||++.
T Consensus 198 --------------------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~----~~Pl~~ih~~~e~~~~ 247 (601)
T PRK14083 198 --------------------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG----FTPLDVIPLDVPSGGL 247 (601)
T ss_pred --------------------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC----CCchheeeecccchhh
Confidence 1479999999999999999 9999999999987 5899999999999886
Q ss_pred eEEEEE-eCCCCCcchhhhhccccccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHH
Q 010583 395 FKAVLF-VPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIK 473 (507)
Q Consensus 395 f~~lly-ip~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~ir 473 (507)
+++|| ||..+|++ .+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||
T Consensus 248 -~~~Ly~iP~~~~~~--------~~~~v~LY~~rVfI~d~~~~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir 318 (601)
T PRK14083 248 -EGVAYVLPYAVSPA--------ARRKHRVYLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVR 318 (601)
T ss_pred -eEEEEecCCCCCcc--------ccCceEEEeeeeEeecchhhhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHH
Confidence 67787 68888763 256999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccc
Q 010583 474 KKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 474 k~l~~k~l~~l~~la~~~~~~~~ 496 (507)
+.|++||+++|+++|+++|+.|.
T Consensus 319 ~~i~kki~~~L~~la~~d~e~y~ 341 (601)
T PRK14083 319 EELGEAIRKWLIGLATTDPERLR 341 (601)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHH
Confidence 99999999999999999998876
No 8
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=7.1e-64 Score=542.37 Aligned_cols=232 Identities=59% Similarity=1.036 Sum_probs=180.8
Q ss_pred ccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhhhhhhhccccCCCc-ccc-cccccCCCcccc
Q 010583 259 EYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSESESE-DED-EDSEKKPKTKTV 336 (507)
Q Consensus 259 e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~k~~ 336 (507)
+||++++|++||+|||+||+|||+|+.++++++++++++++.+.++. .+++..++++.++++ +.+ +.++++|++|++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~-~~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~ 79 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEK-EEEEKKEEEEEKVEEEDEEEEKEEKKPKTKKV 79 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HT-T-TT--------SSEEEE----S-TTEEEEEC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhh-hhcccccccccccccccccccccccccccccc
Confidence 59999999999999999999999999999888777654322111100 000101111112211 111 223456788899
Q ss_pred cccccceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccceeEEEEEeCCCCCcchhhhhccc
Q 010583 337 KETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNT 416 (507)
Q Consensus 337 ~~~~~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f~~llyip~~~p~~~~~~~~~~ 416 (507)
++++|+|++||+++|||+|+|++||++||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|+.+ .
T Consensus 80 ~~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~--~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~--~ 155 (531)
T PF00183_consen 80 KETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDY--DDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFEND--K 155 (531)
T ss_dssp CEEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTS--S-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSS--T
T ss_pred ccceeecccccccCcccccchhccchHHHHHHHHHhhhcc--cCchhheeccccccceeeEEEEeCCCCchhhhhhh--h
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999999999763 4
Q ss_pred cccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 010583 417 NKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 417 ~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
..++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|++||+ +++.|.
T Consensus 156 ~~~~ikLY~rrVfI~d~~~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~~-d~e~y~ 234 (531)
T PF00183_consen 156 KKNGIKLYVRRVFITDNFEELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLAK-DREKYE 234 (531)
T ss_dssp T--SEEEEETTEEEESSCGGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT-SHHHHH
T ss_pred ccccceeeeecccccchhhcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHhh-hHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999996 445444
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.71 E-value=1.2e-17 Score=151.57 Aligned_cols=101 Identities=39% Similarity=0.571 Sum_probs=76.5
Q ss_pred CCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcC-CccEEEEEECCCCCCHHHHHHHHHHHHhcC
Q 010583 98 YSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIGMTKEDLIKNLGTIAKSG 176 (507)
Q Consensus 98 Ys~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~-~~~~L~I~DNGiGMT~edL~~~LgtIa~Sg 176 (507)
|+. ..+|+|||+||+||.++ .+.|.|..++ +...|.|.|||.||+.++|.. +++++.|+
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~------------------~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~ 60 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGAT------------------NIKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSS 60 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHH------------------HEEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTH
T ss_pred CcH-HHHHHHHHHHHHHccCC------------------EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCC
Confidence 666 88999999999999985 2456666553 457999999999999999998 77899887
Q ss_pred chhHHHhhhccCCCccccccccc-eeeeeeecCEEEEEEeeCCC-eeEEEE
Q 010583 177 TSAFVEKMQTSGDLNLIGQFGVG-FYSVYLVADYVEVISKHNDD-KQYVWE 225 (507)
Q Consensus 177 k~~f~~~l~~~~~~~~IGqFGIG-f~S~FmVadkV~V~Sk~~~d-~~~~W~ 225 (507)
+... .....+|+||+| ++|+|+++++++|+|++.+. ..+.|.
T Consensus 61 k~~~-------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~ 104 (137)
T PF13589_consen 61 KKSE-------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTID 104 (137)
T ss_dssp HHHH-------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEE
T ss_pred CCch-------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEE
Confidence 6521 124579999999 88999999999999998744 344443
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=6.7e-14 Score=143.43 Aligned_cols=162 Identities=21% Similarity=0.293 Sum_probs=108.3
Q ss_pred hcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCcc-EEEEEECCCCCCHHHHHHHHHHHH
Q 010583 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK-ILSIRDRGIGMTKEDLIKNLGTIA 173 (507)
Q Consensus 95 ~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~-~L~I~DNGiGMT~edL~~~LgtIa 173 (507)
.....++..+|+|||+||.||.+. .|.|.+..++. .|+|.|||.||+.+++...+...+
T Consensus 17 ~~~i~~~~~~l~eLi~Na~dA~a~--------------------~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ 76 (312)
T TIGR00585 17 GEVIERPASVVKELVENSLDAGAT--------------------RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHA 76 (312)
T ss_pred cCchhhHHHHHHHHHHHHHHCCCC--------------------EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCC
Confidence 456778999999999999999742 34444433443 599999999999999987555444
Q ss_pred hcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEee-C-CCeeEEEEecCCCceEEEECCCCCCCCCCcEEEE
Q 010583 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKH-N-DDKQYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (507)
Q Consensus 174 ~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~-~-~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L 251 (507)
.|....+. . .......|.+|.|++|...+| +++|+|++ . ++.++.|...++ .+... .....++||+|++
T Consensus 77 tsk~~~~~-~---~~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~---~~~~~-~~~~~~~GTtV~v 147 (312)
T TIGR00585 77 TSKIQSFE-D---LERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG---MIEEI-KPAPRPVGTTVEV 147 (312)
T ss_pred cCCCCChh-H---hhcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC---cCccc-ccccCCCccEEEE
Confidence 44322221 1 123467899999999999998 89999997 3 456788874433 22221 1234579999999
Q ss_pred E-ec---Ccccccc-----cHHHHHHHHHHHh---CcCCcceeecc
Q 010583 252 H-LR---DEAGEYL-----EESKLKELVKKYS---EFINFPIYIWA 285 (507)
Q Consensus 252 ~-Lk---~d~~e~l-----e~~~i~~lIkkys---~fl~~PI~l~~ 285 (507)
. |- +.-+.++ +...++.++.+|+ ..+.|.++.++
T Consensus 148 ~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~ 193 (312)
T TIGR00585 148 RDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHDG 193 (312)
T ss_pred chhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 6 10 0001121 2467899999998 55667777754
No 11
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.41 E-value=3.4e-13 Score=150.41 Aligned_cols=145 Identities=23% Similarity=0.349 Sum_probs=107.0
Q ss_pred CCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccE-EEEEECCCCCCHHHHHHHHHHHHhc
Q 010583 97 LYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKI-LSIRDRGIGMTKEDLIKNLGTIAKS 175 (507)
Q Consensus 97 LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~-L~I~DNGiGMT~edL~~~LgtIa~S 175 (507)
....|..++||||.||+||+++ +|+|.++.++.. |.|+|||+||+++||.-.+...|+|
T Consensus 20 VIerPaSVVKELVENSlDAGAt--------------------~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTS 79 (638)
T COG0323 20 VIERPASVVKELVENSLDAGAT--------------------RIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATS 79 (638)
T ss_pred eeecHHHHHHHHHhcccccCCC--------------------EEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccc
Confidence 3447999999999999999973 688888877755 9999999999999999999999998
Q ss_pred CchhHHHhhhccCCCcccccccc---ceeeeeeecCEEEEEEeeCC-CeeEEEEecCCCce-EEEECCCCCCCCCCcEEE
Q 010583 176 GTSAFVEKMQTSGDLNLIGQFGV---GFYSVYLVADYVEVISKHND-DKQYVWESKADGAF-AISEDTWNEPLGRGTEIR 250 (507)
Q Consensus 176 gk~~f~~~l~~~~~~~~IGqFGI---Gf~S~FmVadkV~V~Sk~~~-d~~~~W~s~~~~~f-~I~~~~~~~~~~~GT~I~ 250 (507)
.-+.+ .|..-|-.||+ .+.|.-.| .+++|+|+..+ ..++.|...|++.- .+.+ ...+.||+|.
T Consensus 80 KI~~~-------~DL~~I~TlGFRGEAL~SIasV-srlti~Srt~~~~~~~~~~~~g~~~~~~~~p----~a~~~GTtVe 147 (638)
T COG0323 80 KIASL-------EDLFRIRTLGFRGEALASIASV-SRLTITSRTAEASEGTQIYAEGGGMEVTVKP----AAHPVGTTVE 147 (638)
T ss_pred cCCch-------hHHHHhhccCccHHHHHHHHhh-heeEEEeecCCcCceEEEEecCCcccccccC----CCCCCCCEEE
Confidence 65432 23334555555 56555555 78999999764 45777777665432 3333 2345699999
Q ss_pred EE------------ecCcccccccHHHHHHHHHHHhCc
Q 010583 251 LH------------LRDEAGEYLEESKLKELVKKYSEF 276 (507)
Q Consensus 251 L~------------Lk~d~~e~le~~~i~~lIkkys~f 276 (507)
+. +|....+| .+|.++|++|+-.
T Consensus 148 V~dLF~NtPaRrKflks~~~E~---~~i~~vv~r~ALa 182 (638)
T COG0323 148 VRDLFYNTPARRKFLKSEKTEF---GHITELINRYALA 182 (638)
T ss_pred ehHhhccChHHHHhhcccHHHH---HHHHHHHHHHHhc
Confidence 83 56554444 8899999999764
No 12
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.33 E-value=6.1e-12 Score=132.93 Aligned_cols=135 Identities=26% Similarity=0.348 Sum_probs=94.7
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEc-CCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f 180 (507)
...+||||.||+|||+.. +-.|.+.|+|..- ++-.++.|.|||+|++.+.+.+.||++..+++-
T Consensus 38 ~~tv~ElV~NSLDA~eea-------------GILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKf-- 102 (538)
T COG1389 38 TTTVHELVTNSLDACEEA-------------GILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKF-- 102 (538)
T ss_pred HHHHHHHHhcchhhHHhc-------------CCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchh--
Confidence 468999999999999852 2236667777643 455689999999999999999999999887653
Q ss_pred HHhhhccCCCccccccccceeeeee-----ecCEEEEEEeeCC-CeeEEEEecCC---CceEEEEC--CCCCCCCCCcEE
Q 010583 181 VEKMQTSGDLNLIGQFGVGFYSVYL-----VADYVEVISKHND-DKQYVWESKAD---GAFAISED--TWNEPLGRGTEI 249 (507)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGf~S~Fm-----VadkV~V~Sk~~~-d~~~~W~s~~~---~~f~I~~~--~~~~~~~~GT~I 249 (507)
.. ..+..||+|||..+|.+ -+..|.|+|+..+ +..+.++..-+ ++-.|... ......+|||+|
T Consensus 103 h~------~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~V 176 (538)
T COG1389 103 HR------NIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRV 176 (538)
T ss_pred hh------hhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEE
Confidence 21 23567999999866655 4578999999875 44554432111 12122221 112244799999
Q ss_pred EEEecCcc
Q 010583 250 RLHLRDEA 257 (507)
Q Consensus 250 ~L~Lk~d~ 257 (507)
.|+++..+
T Consensus 177 el~~~~~~ 184 (538)
T COG1389 177 ELELKGVW 184 (538)
T ss_pred EEEecccc
Confidence 99999875
No 13
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.24 E-value=6.3e-11 Score=129.51 Aligned_cols=152 Identities=24% Similarity=0.325 Sum_probs=100.1
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEc---CCccEEEEEECCCCCCHHHHHHHHHHHHhcCch
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD---KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d---~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~ 178 (507)
..+|+|||+||+||++.. +..+.+.|.+... .+...|+|.|||+||+.+++...|+....+++
T Consensus 38 ~qVLkNLIeNAIDa~~~~-------------gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK- 103 (535)
T PRK04184 38 YTTVKELVDNSLDACEEA-------------GILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSK- 103 (535)
T ss_pred HHHHHHHHHHHHHHhhhc-------------CCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccc-
Confidence 567899999999999741 1123455555542 22357999999999999999988877644332
Q ss_pred hHHHhhhccCCCccccccccceeeeeeecC-----EEEEEEeeCCCe-eEEEEec-----CCCceEEEECCCCCCCCCCc
Q 010583 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWESK-----ADGAFAISEDTWNEPLGRGT 247 (507)
Q Consensus 179 ~f~~~l~~~~~~~~IGqFGIGf~S~FmVad-----kV~V~Sk~~~d~-~~~W~s~-----~~~~f~I~~~~~~~~~~~GT 247 (507)
|. ......|++|+|+.+|.+++. .+.|.|+..++. ++.++.. ..+. .+.........++||
T Consensus 104 -~~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~-i~~~~~~~~~~~~GT 175 (535)
T PRK04184 104 -FH------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPI-ILEREEVDWDRWHGT 175 (535)
T ss_pred -cc------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCe-eccccccCCCCCCCE
Confidence 10 113456999999999988764 589999886554 5544432 1121 111111112457899
Q ss_pred EEEEEecCcccccccHHHHHHHHHHHhCcC
Q 010583 248 EIRLHLRDEAGEYLEESKLKELVKKYSEFI 277 (507)
Q Consensus 248 ~I~L~Lk~d~~e~le~~~i~~lIkkys~fl 277 (507)
+|.+.+...+. ....++.++|++++-.-
T Consensus 176 ~V~V~l~~~~~--~~~~~I~e~i~r~Al~n 203 (535)
T PRK04184 176 RVELEIEGDWY--RAKQRIYEYLKRTAIVN 203 (535)
T ss_pred EEEEEECCcCh--hhHHHHHHHHHHHHHhC
Confidence 99999986653 22678889999887653
No 14
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.24 E-value=2.5e-11 Score=135.29 Aligned_cols=153 Identities=21% Similarity=0.339 Sum_probs=102.1
Q ss_pred hcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHHHHHH
Q 010583 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIA 173 (507)
Q Consensus 95 ~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~edL~~~LgtIa 173 (507)
.....++..+|+|||+||+||+++ .|.|.+..++ ..|+|.|||.||+.+++...+...+
T Consensus 17 gevI~~~~svvkElveNsiDAgat--------------------~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~ 76 (617)
T PRK00095 17 GEVVERPASVVKELVENALDAGAT--------------------RIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHA 76 (617)
T ss_pred cCcccCHHHHHHHHHHHHHhCCCC--------------------EEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccC
Confidence 445678999999999999999853 4555554344 5799999999999999998777666
Q ss_pred hcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCC-CeeEEEEecCCCceEEEECCCCCCCCCCcEEEEE
Q 010583 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLH 252 (507)
Q Consensus 174 ~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~-d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~ 252 (507)
.|....+ +.+ ......|..|.|+.|.-.|+ +++|+|+..+ +.+|.+...++....+.+ ....+||+|++.
T Consensus 77 tsKi~~~-~dl---~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~----~~~~~GT~V~v~ 147 (617)
T PRK00095 77 TSKIASL-DDL---EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKP----AAHPVGTTIEVR 147 (617)
T ss_pred CCCCCCh-hHh---hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceec----ccCCCCCEEEec
Confidence 5533221 111 12345789999998887776 8999999864 346666554432222222 224799999994
Q ss_pred -e---cCccccc-----ccHHHHHHHHHHHhCc
Q 010583 253 -L---RDEAGEY-----LEESKLKELVKKYSEF 276 (507)
Q Consensus 253 -L---k~d~~e~-----le~~~i~~lIkkys~f 276 (507)
| .+.-+.| .+...|.+++++|+-.
T Consensus 148 ~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~ 180 (617)
T PRK00095 148 DLFFNTPARRKFLKSEKTELGHIDDVVNRLALA 180 (617)
T ss_pred hhhccCcHHHHhccCcHHHHHHHHHHHHHHhhc
Confidence 0 0111112 2345788889988765
No 15
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.11 E-value=5.3e-10 Score=121.15 Aligned_cols=153 Identities=22% Similarity=0.352 Sum_probs=97.9
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCC-ccEEEEEECCCCCCHHHHHHHHHHHHhcCchhH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f 180 (507)
..+++|||.||+||++.. +..+.+.|.+..... ...|+|.|||.||+.+++...|....++++..
T Consensus 30 ~~VlkELVeNAIDA~~~~-------------g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~- 95 (488)
T TIGR01052 30 TTVIHELVTNSLDACEEA-------------GILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFH- 95 (488)
T ss_pred HHHHHHHHHHHHHHhhcc-------------CCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCccc-
Confidence 358899999999999631 112234454443222 23799999999999999998888765443310
Q ss_pred HHhhhccCCCccccccccceeeeeeecC-----EEEEEEeeCCCe-eEEEEec-----CCCceEEEECCCCCCCCCCcEE
Q 010583 181 VEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWESK-----ADGAFAISEDTWNEPLGRGTEI 249 (507)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGf~S~FmVad-----kV~V~Sk~~~d~-~~~W~s~-----~~~~f~I~~~~~~~~~~~GT~I 249 (507)
......|++|+|+.++.+++. .++|+|+..+.. ++.++.. .+|. .+...+.+...++||+|
T Consensus 96 -------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~-i~~~~~~~~~~~~GT~V 167 (488)
T TIGR01052 96 -------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGE-IVEKGEWNKPGWRGTRI 167 (488)
T ss_pred -------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCe-ecceeecCCCCCCceEE
Confidence 123456999999999988875 499999986443 4444432 1222 12221212222589999
Q ss_pred EEEecCcccccccHHHHHHHHHHHhCcC
Q 010583 250 RLHLRDEAGEYLEESKLKELVKKYSEFI 277 (507)
Q Consensus 250 ~L~Lk~d~~e~le~~~i~~lIkkys~fl 277 (507)
++........+ ...++.+++++++-.-
T Consensus 168 ~v~f~~~~~r~-~k~~i~e~l~~~Al~n 194 (488)
T TIGR01052 168 ELEFKGVSYRR-SKQGVYEYLRRTAVAN 194 (488)
T ss_pred EEEECCceeec-cHHHHHHHHHHHHhhC
Confidence 99866543221 3478999999887643
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.02 E-value=1.1e-09 Score=122.97 Aligned_cols=149 Identities=22% Similarity=0.294 Sum_probs=97.0
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
...|+|||.||+||+.. . +..+.+.|.|........|+|.|||.||+++++...|...+++++ |.
T Consensus 48 ~tVLkNLIeNALDAs~~--------~-----gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f~ 112 (795)
T PRK14868 48 VTAVKEAVDNALDATEE--------A-----GILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--FH 112 (795)
T ss_pred HHHHHHHHHHHHHhCcc--------c-----CCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--cc
Confidence 46889999999999863 0 111334555543323347999999999999999998888775543 11
Q ss_pred HhhhccCCCccccccccceeeeeeecC-----EEEEEEeeCCC-eeEEEEe--cCC-CceEE--EECCCCCCCCCCcEEE
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDD-KQYVWES--KAD-GAFAI--SEDTWNEPLGRGTEIR 250 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVad-----kV~V~Sk~~~d-~~~~W~s--~~~-~~f~I--~~~~~~~~~~~GT~I~ 250 (507)
......|+.|+|+.++.+++. .+.|+|+..+. .++.|.. +.+ +.-.| ... .....++||+|.
T Consensus 113 ------~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~-~~~~~~~GT~Ie 185 (795)
T PRK14868 113 ------AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEET-TTWDRPHGTRIE 185 (795)
T ss_pred ------ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceeccee-cccCCCCceEEE
Confidence 111345899999988888774 48999997643 4554443 332 11122 111 112457999999
Q ss_pred EEecCcccccccHHHHHHHHHHHhC
Q 010583 251 LHLRDEAGEYLEESKLKELVKKYSE 275 (507)
Q Consensus 251 L~Lk~d~~e~le~~~i~~lIkkys~ 275 (507)
+.|... |.-..+|.++|++++-
T Consensus 186 V~Lf~N---~pAR~kI~eyl~r~Al 207 (795)
T PRK14868 186 LEMEAN---MRARQQLHDYIKHTAV 207 (795)
T ss_pred EEEEcc---CchhhhHHHHHHHHHh
Confidence 998654 3345678888887654
No 17
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.68 E-value=4.2e-08 Score=106.54 Aligned_cols=157 Identities=28% Similarity=0.377 Sum_probs=108.4
Q ss_pred cCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHHHHHHh
Q 010583 96 SLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAK 174 (507)
Q Consensus 96 ~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~edL~~~LgtIa~ 174 (507)
-+...|.-+|.|||.|+.||.+. +|.|.+..++ +.|.|.|||.|+-++||.-..-...+
T Consensus 23 EVI~RP~NAlKEliENSLDA~ST--------------------~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftT 82 (694)
T KOG1979|consen 23 EVIQRPVNALKELIENSLDANST--------------------SIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTT 82 (694)
T ss_pred chhhchHHHHHHHHhccccCCCc--------------------eEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhh
Confidence 34557899999999999999853 6888776666 56899999999999999965555666
Q ss_pred cCchhHHHhhhccCCCcccccccc-c-eeeeeeecCEEEEEEeeCCCe-eEEEEecCCCceEEEECCCCCCCCCCcEEEE
Q 010583 175 SGTSAFVEKMQTSGDLNLIGQFGV-G-FYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (507)
Q Consensus 175 Sgk~~f~~~l~~~~~~~~IGqFGI-G-f~S~FmVadkV~V~Sk~~~d~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L 251 (507)
|.-..| .+...|..||+ | -+++..-+-+|+|+|+..++. +|. -+..+|... ..|.+-....||.|++
T Consensus 83 SKL~kF-------EDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayr-asY~DGkm~--~~pKpcAgk~GT~I~v 152 (694)
T KOG1979|consen 83 SKLTKF-------EDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYR-ASYRDGKMI--ATPKPCAGKQGTIITV 152 (694)
T ss_pred hhcchh-------HHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeE-EEeeccccc--cCCCCccCCCceEEEe
Confidence 643333 23445666666 2 345566668999999998654 433 244555433 2233334578999998
Q ss_pred E------------ecCcccccccHHHHHHHHHHHhCc---CCcceeecc
Q 010583 252 H------------LRDEAGEYLEESKLKELVKKYSEF---INFPIYIWA 285 (507)
Q Consensus 252 ~------------Lk~d~~e~le~~~i~~lIkkys~f---l~~PI~l~~ 285 (507)
. |+....+| .+|..++.+|+-+ +.|...-.+
T Consensus 153 edLFYN~~~Rrkal~~~~EE~---~ki~dlv~ryAIHn~~VsFs~rk~G 198 (694)
T KOG1979|consen 153 EDLFYNMPTRRKALRNHAEEY---RKIMDLVGRYAIHNPRVSFSLRKQG 198 (694)
T ss_pred hHhhccCHHHHHHhcCcHHHH---HHHHHHHHHHheeCCCcceEEeecc
Confidence 3 66555555 7899999999876 555555443
No 18
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.64 E-value=1.2e-07 Score=105.93 Aligned_cols=149 Identities=19% Similarity=0.262 Sum_probs=88.4
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCC-ccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
..++|||.||+||++.. +..+.+.|.+..... ...|+|.|||.||+++++...|+....+++ |.
T Consensus 39 ~VVkELVeNAIDA~~~~-------------g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK--~~ 103 (659)
T PRK14867 39 TIIHELVTNSLDACEEA-------------EILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSK--MH 103 (659)
T ss_pred HHHHHHHHHHHHHhhcc-------------CCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCc--cc
Confidence 67899999999999631 112334555543222 235999999999999999988876432222 10
Q ss_pred HhhhccCCCccccccccceeeeeeecC-----EEEEEEeeCCCeeE--EEEec---CCCceEEEECCCCCCCCCCcEEEE
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDKQY--VWESK---ADGAFAISEDTWNEPLGRGTEIRL 251 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVad-----kV~V~Sk~~~d~~~--~W~s~---~~~~f~I~~~~~~~~~~~GT~I~L 251 (507)
.-....|+.|+|+.++-+++. .+.|.|+..++..+ .|... .+|.. +.. ......++||+|.+
T Consensus 104 ------~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I-~~~-~~~~~~~~GT~Ie~ 175 (659)
T PRK14867 104 ------RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDI-VSH-KVREGFWRGTRVEG 175 (659)
T ss_pred ------ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCee-ccc-ccCCCCCCCcEEEE
Confidence 012456899999988766554 36888887544432 22221 12221 111 01123479999997
Q ss_pred EecCcccccccHHHHHHHHHHHhC
Q 010583 252 HLRDEAGEYLEESKLKELVKKYSE 275 (507)
Q Consensus 252 ~Lk~d~~e~le~~~i~~lIkkys~ 275 (507)
.+++-...-. +..+.++|++++-
T Consensus 176 ~V~dLFynR~-E~~i~e~l~r~AL 198 (659)
T PRK14867 176 EFKEVTYNRR-EQGPFEYLRRISL 198 (659)
T ss_pred EEeeceechh-hHHHHHHHHHHHH
Confidence 6654211111 2237788887754
No 19
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.58 E-value=1.3e-07 Score=106.16 Aligned_cols=162 Identities=20% Similarity=0.228 Sum_probs=100.5
Q ss_pred ChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH--------HHHH
Q 010583 100 NKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGT 171 (507)
Q Consensus 100 ~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~--------~Lgt 171 (507)
.+...++|||.||+|++.. + ....|.|.++.+ ..|+|.|||.||+.+.... .|++
T Consensus 37 gl~~lv~EivdNaiDe~~a--------------g--~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~ 99 (631)
T PRK05559 37 GLHHLVQEVIDNSVDEALA--------------G--HGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTK 99 (631)
T ss_pred hhhhhhhhhhccccchhhc--------------C--CCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeee
Confidence 3467899999999999742 1 123566666655 4899999999999988876 5665
Q ss_pred HHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCe-eEEEEecCCCceEEEECCCCCCCCCCcEEE
Q 010583 172 IAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIR 250 (507)
Q Consensus 172 Ia~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~ 250 (507)
+-.+|+ |-. ......-|..|+|..++=.++.+++|.|+..+.. ...|+ .|...-.+..........+||+|+
T Consensus 100 lhagsK--f~~----~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~~~~~~f~-~G~~~~~l~~~~~~~~~~~GT~V~ 172 (631)
T PRK05559 100 LHAGGK--FSN----KAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGKVYRQRFE-GGDPVGPLEVVGTAGKRKTGTRVR 172 (631)
T ss_pred ccccCc--cCC----ccccccCcccccchhhhhhheeeEEEEEEeCCeEEEEEEE-CCcCccCccccccccCCCCCcEEE
Confidence 433333 211 1112457999999999999999999999975432 23343 221111111111111147899999
Q ss_pred EEecCcc--cccccHHHHHHHHHHHhCcC-Ccceeecc
Q 010583 251 LHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWA 285 (507)
Q Consensus 251 L~Lk~d~--~e~le~~~i~~lIkkys~fl-~~PI~l~~ 285 (507)
......- ..-++...|.+.++.++-.. ..-|.++.
T Consensus 173 f~PD~~iF~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d 210 (631)
T PRK05559 173 FWPDPKIFDSPKFSPERLKERLRSKAFLLPGLTITLND 210 (631)
T ss_pred EEECHHHcCCcccCHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 9643211 11235677888888887433 23444444
No 20
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.54 E-value=7.7e-08 Score=82.66 Aligned_cols=81 Identities=28% Similarity=0.425 Sum_probs=59.7
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
...|.||++||+++... ...+.|.+..+.+.-.|+|.|||.||+.+++...+.....+
T Consensus 7 ~~il~~ll~Na~~~~~~----------------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~------ 64 (111)
T PF02518_consen 7 RQILSELLDNAIKHSPE----------------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTS------ 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHH----------------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHS------
T ss_pred HHHHHHHHHHHHHHhcC----------------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhcccc------
Confidence 45789999999999974 13456777666667789999999999999998654322111
Q ss_pred HhhhccCCCccccccccceeeeeeecCE
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVADY 209 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVadk 209 (507)
..+....+++|+|++.|..++++
T Consensus 65 -----~~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 65 -----DKSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp -----SSSSGGSSSSSHHHHHHHHHHHH
T ss_pred -----cccccccCCCChHHHHHHHHHHH
Confidence 11345677899999999888765
No 21
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.48 E-value=2e-07 Score=103.15 Aligned_cols=161 Identities=21% Similarity=0.277 Sum_probs=98.7
Q ss_pred HHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHHH
Q 010583 92 IIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLG 170 (507)
Q Consensus 92 lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~edL~~~Lg 170 (507)
|-+.+...+..++++|||.||.||+++ .|.|.++..+ ..|.|.|||.|++..+..-.-.
T Consensus 12 I~S~qvI~sl~sAVKELvENSiDAGAT--------------------~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~l 71 (672)
T KOG1978|consen 12 ICSSQVITSLVSAVKELVENSIDAGAT--------------------AIDIKVKDYGSDSIEVSDNGSGISATDFEGLAL 71 (672)
T ss_pred cccCCeeccHHHHHHHHHhcCcccCCc--------------------eeeEecCCCCcceEEEecCCCCCCccchhhhhh
Confidence 444556667789999999999999974 4666665444 5899999999999998875222
Q ss_pred HHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeC-CCeeEEEEecCCCceEEEECCCCCCCCCCcEE
Q 010583 171 TIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISEDTWNEPLGRGTEI 249 (507)
Q Consensus 171 tIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~-~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I 249 (507)
..-.|.-..|-+ + ....-.|--|=. +|+.+.-..|.|.|++. ...+..|.-+..|... ... .-..++||+|
T Consensus 72 kh~TSKi~~f~D-l---~~l~T~GFRGEA-LSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~-~k~--~~ar~~GTTV 143 (672)
T KOG1978|consen 72 KHTTSKIVSFAD-L---AVLFTLGFRGEA-LSSLCALGDVMISTRSHSAKVGTRLVYDHDGHII-QKK--PVARGRGTTV 143 (672)
T ss_pred hhhhhcccchhh-h---hhhhhhhhHHHH-HHhhhhccceEEEEeeccCccceeEEEccCCcee-eec--cccCCCCCEE
Confidence 233333333311 0 011122333323 36666556677888875 3457778877776543 221 2356899999
Q ss_pred EEE-------ec-Cc-----ccccccHHHHHHHHHHHhCc---CCcceee
Q 010583 250 RLH-------LR-DE-----AGEYLEESKLKELVKKYSEF---INFPIYI 283 (507)
Q Consensus 250 ~L~-------Lk-~d-----~~e~le~~~i~~lIkkys~f---l~~PI~l 283 (507)
++. ++ .+ -++| .++..++..|+-+ |.|+.+-
T Consensus 144 ~v~~LF~tLPVR~kef~r~~Kref---~k~i~li~~y~li~~~ir~~~~n 190 (672)
T KOG1978|consen 144 MVRQLFSTLPVRRKEFQRNIKRKF---VKLISLIQAYALISTAIKFLVSN 190 (672)
T ss_pred EHhhhcccCCCchHHhhcchhhhh---hhHHhhHHHHHhhcccceeeeee
Confidence 984 11 00 1223 5677788888765 4555543
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.48 E-value=2.5e-07 Score=103.61 Aligned_cols=162 Identities=18% Similarity=0.182 Sum_probs=98.6
Q ss_pred ChhHHHHHhhhcHHH-HHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHH--------HHHHHH
Q 010583 100 NKDIFLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLG 170 (507)
Q Consensus 100 ~~~ifLRELIqNA~D-A~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~ed--------L~~~Lg 170 (507)
++...+.|||.||+| |++. ..-.|.|.++.+ ..|+|.|||.||+.++ +.-.|+
T Consensus 30 ~~~~lv~ElvdNsiDE~~ag-----------------~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t 91 (625)
T TIGR01055 30 RPNHLVQEVIDNSVDEALAG-----------------FASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILT 91 (625)
T ss_pred CcceeehhhhhcccchhhcC-----------------CCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhh
Confidence 346799999999999 2210 012566666655 7899999999999988 665564
Q ss_pred HHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCc-eEEEECCCCCCCCCCcEE
Q 010583 171 TIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEI 249 (507)
Q Consensus 171 tIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I 249 (507)
+.-.+|+ | ....-....|.-|+|..|+=.++.+++|.|+..+.. |.++...+.. -.+..........+||+|
T Consensus 92 ~lhagsK--~----~~~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V 164 (625)
T TIGR01055 92 TLHAGGK--F----SNKNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSV 164 (625)
T ss_pred cccccCC--C----CCCcceecCCCcchhHHHHHHhcCeEEEEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEE
Confidence 4433333 1 111112457999999999999999999999976533 4433332211 011111011123589999
Q ss_pred EEEecCcc--cccccHHHHHHHHHHHhCcC-Ccceeeccc
Q 010583 250 RLHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWAS 286 (507)
Q Consensus 250 ~L~Lk~d~--~e~le~~~i~~lIkkys~fl-~~PI~l~~~ 286 (507)
+..-.... ..-.+..+|.+.++.++-.. ..-|.++++
T Consensus 165 ~F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~de 204 (625)
T TIGR01055 165 HFTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDE 204 (625)
T ss_pred EEEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeec
Confidence 98532211 11234577888888876543 345556543
No 23
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.42 E-value=2.6e-07 Score=103.02 Aligned_cols=155 Identities=19% Similarity=0.234 Sum_probs=92.1
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHH-------HHHHHHHhcC
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKSG 176 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~-------~~LgtIa~Sg 176 (507)
.++|||.||+||... + ..-.|.|.++.++ .|+|.|||.||+.+... ..+.++..+|
T Consensus 5 ~v~ElvdNAiD~~~~--------------g--~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag 67 (594)
T smart00433 5 LVDEIVDNAADEALA--------------G--YMDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAG 67 (594)
T ss_pred EEeeehhcccchhcc--------------C--CCCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhccc
Confidence 578999999999842 1 1236777776554 99999999999953321 1122222222
Q ss_pred chhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCce-E-EEECCCCCCCCCCcEEEEEec
Q 010583 177 TSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF-A-ISEDTWNEPLGRGTEIRLHLR 254 (507)
Q Consensus 177 k~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f-~-I~~~~~~~~~~~GT~I~L~Lk 254 (507)
.+ | ........-|.-|+|..|+-.++.+++|.|+..+. .|......+|.- + +... +.....||+|+. .
T Consensus 68 ~k-f----d~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~-~~~~~~~~~G~~~~~~~~~--~~~~~~GT~V~F--~ 137 (594)
T smart00433 68 GK-F----DDDAYKVSGGLHGVGASVVNALSTEFEVEVARDGK-EYKQSFSNNGKPLSEPKII--GDTKKDGTKVTF--K 137 (594)
T ss_pred CC-C----CCCCccccCCcccchHHHHHHhcCceEEEEEeCCc-EEEEEEeCCCeECccceec--CCCCCCCcEEEE--E
Confidence 21 2 10112236799999999999999999999998643 343333221211 1 1111 123478999995 3
Q ss_pred Ccccccc-----cHHHHHHHHHHHhCcC-Ccceeecc
Q 010583 255 DEAGEYL-----EESKLKELVKKYSEFI-NFPIYIWA 285 (507)
Q Consensus 255 ~d~~e~l-----e~~~i~~lIkkys~fl-~~PI~l~~ 285 (507)
++..-|. +...|.+.++.++-.. ..-|.+++
T Consensus 138 Pd~~~F~~~~~~~~~~i~~rl~~~A~l~pgl~i~l~d 174 (594)
T smart00433 138 PDLEIFGMTTDDDFELLKRRLRELAFLNKGVKITLND 174 (594)
T ss_pred ECHHHhCCcccchHHHHHHHHHHHHhcCCCcEEEEec
Confidence 4433332 3467888888886433 23444443
No 24
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.30 E-value=1.2e-06 Score=98.94 Aligned_cols=154 Identities=18% Similarity=0.239 Sum_probs=90.2
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHH-------HHHHHHHh
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAK 174 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~-------~~LgtIa~ 174 (507)
...++|||.||+|-... + ..-.|.|.++.+ ..|+|.|||.||+.+--. ..+.++..
T Consensus 32 ~~vv~Elv~NaiDe~~a--------------g--~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ 94 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAMA--------------G--YCDTINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLH 94 (654)
T ss_pred HhhhHHhhhcccccccc--------------C--CCCEEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeeec
Confidence 45788999999993310 0 012566666644 469999999999975100 01112222
Q ss_pred cCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCc-eEEEECCCCCCCCCCcEEEEEe
Q 010583 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEIRLHL 253 (507)
Q Consensus 175 Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I~L~L 253 (507)
+|.+ |- ........|.-|+|..|+-.++.+++|.|+..+.. |..+...+.. -.+... +....+||+|+..-
T Consensus 95 ag~k-f~----~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~-~~~~~~~G~~~~~l~~~--~~~~~~GT~V~F~p 166 (654)
T TIGR01059 95 AGGK-FD----KDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKI-YRQEFERGIPLGPLEVV--GETKKTGTTVRFWP 166 (654)
T ss_pred ccCc-cC----CCcceecCCccchhHHHHHHhcCeEEEEEEECCeE-EEEEEeCCCcccCceec--cCCCCCCcEEEEEE
Confidence 2221 21 01122457999999999999999999999975432 3333222211 111111 23457899999542
Q ss_pred cCccccc----ccHHHHHHHHHHHhCcCCcceee
Q 010583 254 RDEAGEY----LEESKLKELVKKYSEFINFPIYI 283 (507)
Q Consensus 254 k~d~~e~----le~~~i~~lIkkys~fl~~PI~l 283 (507)
. ..-| .+...|.+.++.++ ++.--|.+
T Consensus 167 d--p~~F~~~~~e~~~i~~rl~~~A-~l~pgl~i 197 (654)
T TIGR01059 167 D--PEIFETTEFDFDILAKRLRELA-FLNSGVKI 197 (654)
T ss_pred C--hHHhCCcccCHHHHHHHHHHhh-ccCCCeEE
Confidence 2 2223 36678889999888 44434444
No 25
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.30 E-value=1.1e-06 Score=98.93 Aligned_cols=156 Identities=17% Similarity=0.233 Sum_probs=91.7
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHH-------HHHHHHHh
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAK 174 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~-------~~LgtIa~ 174 (507)
...++|||.||+|.... + ..-.|.|.++.+ ..|+|.|||.||+.+--. ..+.++..
T Consensus 39 ~~~v~ElvdNaiDe~~a--------------g--~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lh 101 (638)
T PRK05644 39 HHLVYEIVDNSIDEALA--------------G--YCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLH 101 (638)
T ss_pred HhhhHHhhhcccccccC--------------C--CCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeec
Confidence 35778999999994310 1 112566666654 489999999999986211 01222222
Q ss_pred cCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCce--EEEECCCCCCCCCCcEEEEE
Q 010583 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF--AISEDTWNEPLGRGTEIRLH 252 (507)
Q Consensus 175 Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f--~I~~~~~~~~~~~GT~I~L~ 252 (507)
+|.+ | ......-..|..|+|..|+=.++.+++|.|+..+. .|......+ .- .+... +.....||+|+..
T Consensus 102 ag~k-f----d~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~-~~~~~~~~G-~~~~~~~~~--~~~~~~GT~I~F~ 172 (638)
T PRK05644 102 AGGK-F----GGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK-IYYQEYERG-VPVTPLEVI--GETDETGTTVTFK 172 (638)
T ss_pred ccCc-c----CCCcccccCCccccchhhhhheeceEEEEEEeCCc-EEEEEEECC-eEccCcccc--CCcCCCCcEEEEE
Confidence 2221 1 00111235799999999999999999999997543 444333322 21 11111 2235689999963
Q ss_pred ecCccc----ccccHHHHHHHHHHHhCcC-Ccceeecc
Q 010583 253 LRDEAG----EYLEESKLKELVKKYSEFI-NFPIYIWA 285 (507)
Q Consensus 253 Lk~d~~----e~le~~~i~~lIkkys~fl-~~PI~l~~ 285 (507)
++.. .-++...|...++.++-.. ..-|.++.
T Consensus 173 --Pd~~~F~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~ 208 (638)
T PRK05644 173 --PDPEIFETTEFDYDTLATRLRELAFLNKGLKITLTD 208 (638)
T ss_pred --ECHHHcCCcccCHHHHHHHHHHHHhhCCCcEEEEEe
Confidence 3322 2235678888888887443 23444444
No 26
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.29 E-value=1.8e-06 Score=98.39 Aligned_cols=155 Identities=20% Similarity=0.299 Sum_probs=92.9
Q ss_pred hHHHHHhhhcHHH-HHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHH----------HHHHHHH
Q 010583 102 DIFLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE----------DLIKNLG 170 (507)
Q Consensus 102 ~ifLRELIqNA~D-A~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~e----------dL~~~Lg 170 (507)
...++|||.||+| |++. ..-.|+|.++.+ ..|+|.|||.||+.+ |+. |+
T Consensus 39 hhlv~EivdNaiDE~~AG-----------------~a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt 98 (756)
T PRK14939 39 HHMVYEVVDNAIDEALAG-----------------HCDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT 98 (756)
T ss_pred hhhhhHhhcccccccccC-----------------CCCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee
Confidence 4688999999999 3220 112577777654 489999999999987 443 33
Q ss_pred HHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCc-eEEEECCCCCCCCCCcEE
Q 010583 171 TIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEI 249 (507)
Q Consensus 171 tIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I 249 (507)
..-.+|+ | ....-.-.-|.-|+|..++=.++.+++|.|+..+.. |..+...+.. -.+... +....+||+|
T Consensus 99 ~lhAggK--f----d~~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk~-~~q~f~~G~~~~~l~~~--g~~~~~GT~V 169 (756)
T PRK14939 99 VLHAGGK--F----DQNSYKVSGGLHGVGVSVVNALSEWLELTIRRDGKI-HEQEFEHGVPVAPLKVV--GETDKTGTEV 169 (756)
T ss_pred eecccCC--C----CCCcccccCCccCccceEeehccCeEEEEEEeCCeE-EEEEEecCccccCcccc--CCcCCCCcEE
Confidence 2222222 2 101111256899999999999999999999975432 3333222211 011221 2235789999
Q ss_pred EEEecCcc--cccccHHHHHHHHHHHhCcCC--cceeeccc
Q 010583 250 RLHLRDEA--GEYLEESKLKELVKKYSEFIN--FPIYIWAS 286 (507)
Q Consensus 250 ~L~Lk~d~--~e~le~~~i~~lIkkys~fl~--~PI~l~~~ 286 (507)
+..-...- ..-++.+.|...++.++ |++ .-|.++++
T Consensus 170 ~F~PD~~iF~~~~~~~~~i~~rl~elA-~lnpgl~i~l~de 209 (756)
T PRK14939 170 RFWPSPEIFENTEFDYDILAKRLRELA-FLNSGVRIRLKDE 209 (756)
T ss_pred EEEECHHHcCCcccCHHHHHHHHHHHh-hcCCCCEEEEecc
Confidence 98532211 11236677888888887 454 44455543
No 27
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.64 E-value=0.00016 Score=58.13 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=57.6
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~ 182 (507)
.+++||+.||.++... ....+.|++..+...-.+.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~---------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE---------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC---------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC-------
Confidence 4789999999999752 013456666655545578999999999999988655433111
Q ss_pred hhhccCCCccccccccceeeeeeecC----EEEEEEe
Q 010583 183 KMQTSGDLNLIGQFGVGFYSVYLVAD----YVEVISK 215 (507)
Q Consensus 183 ~l~~~~~~~~IGqFGIGf~S~FmVad----kV~V~Sk 215 (507)
......+.+|+|++.+-.+++ .+.+.+.
T Consensus 61 -----~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 61 -----SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred -----CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 112234678999988777766 5555443
No 28
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.47 E-value=4.7e-05 Score=84.79 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=73.1
Q ss_pred ChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHH-HhcCch
Q 010583 100 NKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTI-AKSGTS 178 (507)
Q Consensus 100 ~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtI-a~Sgk~ 178 (507)
+-..+++||++|++||.++ .+.|+ ++-..-.+.|.|||+||+++||.. ||+- +.| +=
T Consensus 21 sla~~VeElv~NSiDA~At------------------~V~v~--V~~~t~sv~ViDdG~G~~rdDl~~-lg~ry~TS-K~ 78 (1142)
T KOG1977|consen 21 SLAQCVEELVLNSIDAEAT------------------CVAVR--VNMETFSVQVIDDGFGMGRDDLEK-LGNRYFTS-KC 78 (1142)
T ss_pred HHHHHHHHHHhhccccCce------------------EEEEE--ecCceeEEEEEecCCCccHHHHHH-HHhhhhhh-hc
Confidence 4466899999999999974 23444 444567899999999999999984 5542 222 21
Q ss_pred hHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCC-eeEE--EEecCCCceEEEECCCCCCCCCCcEEEEE
Q 010583 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYV--WESKADGAFAISEDTWNEPLGRGTEIRLH 252 (507)
Q Consensus 179 ~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d-~~~~--W~s~~~~~f~I~~~~~~~~~~~GT~I~L~ 252 (507)
.|...+ ......|--|=.++|.-=++. .+|+|+..+. .+|. -...|...-.+..+ ..+...||+|+++
T Consensus 79 h~~ndl---~~~~tyGfRGeALasIsd~s~-l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD--~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 79 HSVNDL---ENPRTYGFRGEALASISDMSS-LVVISKKKNRTMKTFVKKFQSGSALKALEID--VTRASSGTTVTVY 149 (1142)
T ss_pred eecccc---ccccccccchhhhhhhhhhhh-hhhhhhhcCCchhHHHHHHhccccceecccc--cccccCCcEEEeH
Confidence 122211 233455666666766555544 4466665432 2322 01112211122222 2466889999985
No 29
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.38 E-value=0.00017 Score=73.75 Aligned_cols=101 Identities=21% Similarity=0.356 Sum_probs=59.9
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~ 182 (507)
..+..||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+++++...+.. ..+
T Consensus 250 ~il~nLi~NA~k~~~----------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~----f~~---- 305 (356)
T PRK10755 250 LLLRNLVENAHRYSP----------------EGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKA----FVR---- 305 (356)
T ss_pred HHHHHHHHHHHhhCC----------------CCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCC----eEe----
Confidence 457777788765531 12345666665655568999999999999998753321 110
Q ss_pred hhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEECCCCCCCCCCcEEEEEecC
Q 010583 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (507)
Q Consensus 183 ~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (507)
. + ..-|.+|+|++-|-.+++. + +|.+.+...+ ...||++++.+..
T Consensus 306 ----~-~-~~~~g~GlGL~i~~~i~~~------~------------gg~i~i~s~~----~~~Gt~~~i~~p~ 350 (356)
T PRK10755 306 ----M-D-SRYGGIGLGLSIVSRITQL------H------------HGQFFLQNRQ----ERSGTRAWVWLPK 350 (356)
T ss_pred ----C-C-CCCCCcCHHHHHHHHHHHH------C------------CCEEEEEECC----CCCeEEEEEEecC
Confidence 0 0 1125689999776555432 1 1234444321 1268988888753
No 30
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.31 E-value=0.0004 Score=72.51 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=49.0
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
...|..|+.||.++.... + .....+.|.+....+.-.|+|.|||+||+.+.+...|-... +++
T Consensus 389 ~~vl~Nl~~NAik~~~~~-------~-----~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~-~~~---- 451 (494)
T TIGR02938 389 RSLFKALVDNAIEAMNIK-------G-----WKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFF-TTK---- 451 (494)
T ss_pred HHHHHHHHHHHHHHhhcc-------C-----CCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCc-ccC----
Confidence 457899999999998631 0 01122344444444445799999999999988876553221 111
Q ss_pred HhhhccCCCccccccccceeeeeee
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
....+.-|+|++.|-.+
T Consensus 452 --------~~~~~G~GlGL~i~~~i 468 (494)
T TIGR02938 452 --------GGSRKHIGMGLSVAQEI 468 (494)
T ss_pred --------CCCCCCCcccHHHHHHH
Confidence 11145678998765444
No 31
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.28 E-value=0.00029 Score=79.44 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=47.6
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
...+.+||+||.++.. ....+.|++..+.+.-.|+|.|||.||+++.+.+.+..-..++
T Consensus 581 ~~vl~nLl~NAik~~~----------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~----- 639 (679)
T TIGR02916 581 ERVLGHLVQNALEATP----------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTT----- 639 (679)
T ss_pred HHHHHHHHHHHHHhCC----------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCC-----
Confidence 3467899999988753 1234566665555555799999999999998554432111110
Q ss_pred HhhhccCCCccccccccceeeeeee
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
+ . +..|+|++.|-.+
T Consensus 640 -------~-~--~G~GLGL~i~~~i 654 (679)
T TIGR02916 640 -------K-G--AGMGIGVYECRQY 654 (679)
T ss_pred -------C-C--CCcchhHHHHHHH
Confidence 1 1 5679999877554
No 32
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.27 E-value=0.00047 Score=56.34 Aligned_cols=81 Identities=22% Similarity=0.365 Sum_probs=53.7
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~ 182 (507)
.++.||+.||.++... ...+.|.+..+.....+.|.|+|.||+.+.+...+.....+ .
T Consensus 8 ~~~~~l~~n~~~~~~~----------------~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~-~----- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTPE----------------GGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRT-D----- 65 (111)
T ss_pred HHHHHHHHHHHhcCCC----------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEEC-C-----
Confidence 3577888887777631 23466777666556689999999999998887655332111 1
Q ss_pred hhhccCCCccccccccceeeeeeecCEE
Q 010583 183 KMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (507)
Q Consensus 183 ~l~~~~~~~~IGqFGIGf~S~FmVadkV 210 (507)
......+++|+|++.|-.++.+.
T Consensus 66 -----~~~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 66 -----GRSRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred -----CCCCCCCcccccHHHHHHHHHHc
Confidence 12234577899998877665553
No 33
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.21 E-value=0.00048 Score=72.63 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=38.6
Q ss_pred CceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeec
Q 010583 136 TKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 207 (507)
Q Consensus 136 ~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVa 207 (507)
..+.|.+..+.+.-.|+|.|||.||+++++.+.+...-+.. .......|..|+|++-|-.++
T Consensus 372 ~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~----------~~~~~~~~g~GlGL~iv~~i~ 433 (466)
T PRK10549 372 GSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTE----------GSRNRASGGSGLGLAICLNIV 433 (466)
T ss_pred CEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCC----------CCcCCCCCCCcHHHHHHHHHH
Confidence 34566666555555789999999999998886443322110 111224567899997655443
No 34
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.21 E-value=0.00054 Score=71.52 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=49.7
Q ss_pred ceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEee
Q 010583 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKH 216 (507)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~ 216 (507)
.+.|++..+.+.-.|+|.|||.||+++.+...+-..-++... ....-+..|+|++-+--++++ +
T Consensus 374 ~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~----------~~~~~~g~GlGL~i~~~~~~~------~ 437 (457)
T TIGR01386 374 TITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPA----------RSNSGEGTGLGLAIVRSIMEA------H 437 (457)
T ss_pred eEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcc----------cCCCCCCccccHHHHHHHHHH------C
Confidence 456666555444579999999999999888655433222110 112235689998765444322 1
Q ss_pred CCCeeEEEEecCCCceEEEECCCCCCCCCCcEEEEEe
Q 010583 217 NDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHL 253 (507)
Q Consensus 217 ~~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~L 253 (507)
+|.+.+.. + +.||++++.+
T Consensus 438 ------------~G~~~~~~-~-----~~G~~~~~~~ 456 (457)
T TIGR01386 438 ------------GGRASAES-P-----DGKTRFILRF 456 (457)
T ss_pred ------------CCEEEEEe-C-----CCceEEEEec
Confidence 23455544 2 4688888865
No 35
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.19 E-value=0.00092 Score=70.01 Aligned_cols=102 Identities=25% Similarity=0.252 Sum_probs=59.7
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~ 182 (507)
..+.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+. ...+..
T Consensus 371 ~vl~nli~Na~~~~~----------------~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~-~~~~~~----- 428 (475)
T PRK11100 371 QALGNLLDNAIDFSP----------------EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFE-RFYSLP----- 428 (475)
T ss_pred HHHHHHHHHHHHhCC----------------CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHH-HHccCC-----
Confidence 456777777776531 1234566666555556799999999999998885443 222111
Q ss_pred hhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEECCCCCCCCCCcEEEEEec
Q 010583 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (507)
Q Consensus 183 ~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk 254 (507)
.. ...-+..|+|++.|-.++.. + +|.+.+... .+.||+|++.+.
T Consensus 429 ----~~-~~~~~~~GlGL~i~~~~~~~------~------------~G~i~i~s~-----~~~Gt~v~i~lp 472 (475)
T PRK11100 429 ----RP-ANGRKSTGLGLAFVREVARL------H------------GGEVTLRNR-----PEGGVLATLTLP 472 (475)
T ss_pred ----CC-CCCCCCcchhHHHHHHHHHH------C------------CCEEEEEEc-----CCCeEEEEEEee
Confidence 00 11224568998876554321 1 234444432 245899888774
No 36
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.16 E-value=0.00091 Score=71.70 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=38.4
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~L 169 (507)
..+.+|+.||.+|... .....+.|++..+.+.-.|+|.|||.||+.+++...|
T Consensus 436 ~vl~nLl~NAi~~~~~--------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF 488 (542)
T PRK11086 436 TILGNLIENALEAVGG--------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIF 488 (542)
T ss_pred HHHHHHHHHHHHHhhc--------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 4678999999999742 1123455555555444578999999999999888655
No 37
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.14 E-value=0.0017 Score=73.46 Aligned_cols=158 Identities=18% Similarity=0.290 Sum_probs=89.9
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH--------H-HHHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------N-LGTIA 173 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~--------~-LgtIa 173 (507)
..+.|+|.||+|-.-. + ..-.|.|.++. ++.|+|.|||-||..+ ++. . |+++-
T Consensus 37 hlv~EIvdNavDE~~a--------------g--~~~~I~V~i~~-dgsitV~DnGrGIPv~-~h~~~~~~~~E~v~t~Lh 98 (637)
T TIGR01058 37 HLVWEIVDNSVDEVLA--------------G--YADNITVTLHK-DNSITVQDDGRGIPTG-IHQDGNISTVETVFTVLH 98 (637)
T ss_pred eehhhhhcchhhhhhc--------------C--CCcEEEEEEcC-CCeEEEEECCCcccCc-ccCcCCCccceeEEEEec
Confidence 4567999999995321 1 12357777764 4589999999999863 211 1 11111
Q ss_pred hcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCe-eEEEEecCCCceEEEECCCCCCCCCCcEEEEE
Q 010583 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRLH 252 (507)
Q Consensus 174 ~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~ 252 (507)
.+|+ | ....-.-.-|.-|+|...+=.++.+++|.++.++.. ...|+..+...-.+... +....+||+|+..
T Consensus 99 aGgk--f----d~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg~~~~~l~~~--~~~~~~GT~V~F~ 170 (637)
T TIGR01058 99 AGGK--F----DQGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGGKIVQSLKKI--GTTKKTGTLVHFH 170 (637)
T ss_pred ccCc--C----CCCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCCcCcCCcccc--cCCCCCceEEEEE
Confidence 1222 1 000112245899999999999999999999865432 22454221111111111 2334689999886
Q ss_pred ecCcc--cccccHHHHHHHHHHHhCcC-Ccceeeccc
Q 010583 253 LRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWAS 286 (507)
Q Consensus 253 Lk~d~--~e~le~~~i~~lIkkys~fl-~~PI~l~~~ 286 (507)
-...- ..-++.+.|+.-++..+-.. ..-|+++++
T Consensus 171 PD~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~de 207 (637)
T TIGR01058 171 PDPTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTDK 207 (637)
T ss_pred eCHHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEec
Confidence 44321 11135667777777766433 356666653
No 38
>PRK10604 sensor protein RstB; Provisional
Probab=96.98 E-value=0.00067 Score=72.12 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=47.4
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~ 182 (507)
.++..||.||..+.. ..+.|.+..+.+.-.|+|.|||.||+.+++..-+....+..
T Consensus 322 ~vl~NLl~NAik~~~------------------~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~------ 377 (433)
T PRK10604 322 RVLDNLLNNALRYAH------------------SRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD------ 377 (433)
T ss_pred HHHHHHHHHHHHhCC------------------CeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC------
Confidence 457777888765431 23566666665666799999999999999886443222110
Q ss_pred hhhccCCCccccccccceeeeeee
Q 010583 183 KMQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 183 ~l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
.+....-|.+|+|++-|-.+
T Consensus 378 ----~~~~~~~~g~GLGL~ivk~i 397 (433)
T PRK10604 378 ----PSRDRATGGCGLGLAIVHSI 397 (433)
T ss_pred ----CCCCCCCCCccchHHHHHHH
Confidence 01112246789998755433
No 39
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.89 E-value=0.0012 Score=65.12 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=46.6
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~ 182 (507)
..|.+||.||..+.. ....+.|.+....+.-.|.|.|||.||+.+.+...+....+. .
T Consensus 232 ~vl~nll~Nai~~~~----------------~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~-~----- 289 (333)
T TIGR02966 232 SAFSNLVSNAIKYTP----------------EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRV-D----- 289 (333)
T ss_pred HHHHHHHHHhheeCC----------------CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceec-C-----
Confidence 367889999877642 112345555554444579999999999999887544221110 0
Q ss_pred hhhccCCCccccccccceeeeeee
Q 010583 183 KMQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 183 ~l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
.......+..|+|++.|-.+
T Consensus 290 ----~~~~~~~~g~glGL~~~~~~ 309 (333)
T TIGR02966 290 ----KSRSRDTGGTGLGLAIVKHV 309 (333)
T ss_pred ----cccccCCCCCcccHHHHHHH
Confidence 00111224568998876554
No 40
>PRK10364 sensor protein ZraS; Provisional
Probab=96.86 E-value=0.0018 Score=68.99 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=37.1
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~L 169 (507)
..+..||.||.+|... ...+.|.+..+.+.-.|.|.|||.||+++.+.+.+
T Consensus 351 ~il~NLl~NA~k~~~~----------------~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 351 QVLLNLYLNAIQAIGQ----------------HGVISVTASESGAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred HHHHHHHHHHHHhcCC----------------CCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHh
Confidence 4577888899888631 23456666655555679999999999999887544
No 41
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.84 E-value=0.0012 Score=75.88 Aligned_cols=50 Identities=16% Similarity=0.330 Sum_probs=34.9
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~L 169 (507)
..|..||+||..+.. ...+.|++..+.+.-.|+|.|||+||+.+++.+-+
T Consensus 516 ~il~NLl~NAik~~~-----------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 565 (921)
T PRK15347 516 QILVNLLGNAVKFTE-----------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIF 565 (921)
T ss_pred HHHHHHHHHHhhcCC-----------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHh
Confidence 456677788776542 12356666555555579999999999999987544
No 42
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.78 E-value=0.0023 Score=67.68 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=48.7
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
...+..||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+-..-+..
T Consensus 319 ~~vl~NLl~NAik~~~----------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~----- 377 (430)
T PRK11006 319 RSAISNLVYNAVNHTP----------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVD----- 377 (430)
T ss_pred HHHHHHHHHHHHhcCC----------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCccccc-----
Confidence 4567888999888752 1223455555554556799999999999999886442211110
Q ss_pred HhhhccCCCccccccccceeeeeee
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
.....-.|..|+|++-|-.+
T Consensus 378 -----~~~~~~~~G~GLGL~ivk~i 397 (430)
T PRK11006 378 -----KARSRQTGGSGLGLAIVKHA 397 (430)
T ss_pred -----CCCCCCCCCCchHHHHHHHH
Confidence 01112235679999776554
No 43
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.78 E-value=0.0018 Score=74.71 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=53.4
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHh
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~ 183 (507)
.|..||+||+.+.. ...+.|.+..+...-.|.|.|||+||+.+++...|....+.
T Consensus 565 il~NLl~NAik~~~-----------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~-------- 619 (914)
T PRK11466 565 VITNLLSNALRFTD-----------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV-------- 619 (914)
T ss_pred HHHHHHHHHHHhCC-----------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcC--------
Confidence 56777888776642 12355665555455579999999999999988655322110
Q ss_pred hhccCCCccccccccceeeeeee----cCEEEEEEeeCCCe
Q 010583 184 MQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKHNDDK 220 (507)
Q Consensus 184 l~~~~~~~~IGqFGIGf~S~FmV----adkV~V~Sk~~~d~ 220 (507)
....|..|+|++-|-.+ +-++.|.|....+.
T Consensus 620 ------~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt 654 (914)
T PRK11466 620 ------SGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGS 654 (914)
T ss_pred ------CCCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCe
Confidence 11236789998765443 35567766654333
No 44
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.76 E-value=0.0019 Score=68.96 Aligned_cols=51 Identities=27% Similarity=0.323 Sum_probs=34.6
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~edL~~~L 169 (507)
.++.+||.||+.+... ...+.|.+..+.++ -.|.|.|||+||+.+.+...+
T Consensus 503 ~~~~nli~na~~~~~~----------------~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f 554 (607)
T PRK11360 503 QVLLNILINAVQAISA----------------RGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIF 554 (607)
T ss_pred HHHHHHHHHHHHHhcC----------------CCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhc
Confidence 3567778887766531 22345555545444 679999999999999887533
No 45
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.73 E-value=0.0016 Score=70.80 Aligned_cols=97 Identities=14% Similarity=0.234 Sum_probs=57.7
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHh
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~ 183 (507)
++.-||.||+.++. ..+.|.+..+.+.-.|+|.|||.||+.+++...+. .+.+
T Consensus 382 vl~NLi~NAik~~~------------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~----~f~~----- 434 (485)
T PRK10815 382 VMGNVLDNACKYCL------------------EFVEISARQTDEHLHIVVEDDGPGIPESKRELIFD----RGQR----- 434 (485)
T ss_pred HHHHHHHHHHHhcC------------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhC----Cccc-----
Confidence 56667777766652 12456655554445799999999999999875442 1110
Q ss_pred hhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEECCCCCCCCCCcEEEEEecC
Q 010583 184 MQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (507)
Q Consensus 184 l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (507)
.. ..-+..|+|++-|--+++ .+ +|.+.+... .+.||++++.++.
T Consensus 435 ---~~--~~~~G~GLGL~Ivk~iv~------~~------------gG~i~v~s~-----~~~Gt~f~i~lp~ 478 (485)
T PRK10815 435 ---AD--TLRPGQGLGLSVAREITE------QY------------EGKISAGDS-----PLGGARMEVIFGR 478 (485)
T ss_pred ---CC--CCCCCcchhHHHHHHHHH------Hc------------CCEEEEEEC-----CCCEEEEEEEEcC
Confidence 00 111357999876655432 12 234444432 2468999988865
No 46
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.72 E-value=0.0024 Score=69.18 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=48.6
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHh
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~ 183 (507)
.+.+||.||.+|+.+. + .....+.|.+..+.+.-.|.|.|||.||+++++..-|.. +.+++
T Consensus 436 vl~nLl~NAi~~~~~~-------~-----~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk------ 496 (545)
T PRK15053 436 IVGNLLDNAFEASLRS-------D-----EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTR------ 496 (545)
T ss_pred HHHHHHHHHHHHHhhC-------C-----CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCC------
Confidence 5889999999998531 0 112234454444434456899999999999988754421 11211
Q ss_pred hhccCCCccccccccceeeeeeec
Q 010583 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (507)
Q Consensus 184 l~~~~~~~~IGqFGIGf~S~FmVa 207 (507)
... -|..|+|++.+-.++
T Consensus 497 -----~~~-~~g~GlGL~ivk~iv 514 (545)
T PRK15053 497 -----ADE-PGEHGIGLYLIASYV 514 (545)
T ss_pred -----CCC-CCCceeCHHHHHHHH
Confidence 111 245699998766553
No 47
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0072 Score=67.53 Aligned_cols=162 Identities=19% Similarity=0.221 Sum_probs=95.2
Q ss_pred hhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHH--------HHHHHHHH
Q 010583 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTI 172 (507)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~ed--------L~~~LgtI 172 (507)
....+.|.|.||+|-.-. + ..-.|.|.++ .++.|+|.|||-||+-+. +.-.|..+
T Consensus 37 LhHlv~EVvDNsiDEala--------------G--~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~L 99 (635)
T COG0187 37 LHHLVWEVVDNSIDEALA--------------G--YADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVL 99 (635)
T ss_pred ceeeEeEeeechHhHHhh--------------C--cCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEee
Confidence 355678999999996531 1 2336777776 567999999999998754 11112112
Q ss_pred HhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCe-eEEEEecCCCceEEEECCCCCCCCCCcEEEE
Q 010583 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (507)
Q Consensus 173 a~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L 251 (507)
-.+|+ |- .+.-.-.=|--|||..-|=.++++++|.++.++.. .-.|+- |...-.+...........||+|+.
T Consensus 100 HAGGK--Fd----~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~-G~~~~~l~~ig~~~~~~~GT~V~F 172 (635)
T COG0187 100 HAGGK--FD----NDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFER-GVPVTPLEVIGSTDTKKTGTKVRF 172 (635)
T ss_pred ccCcc--cC----CCccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeC-CCcCCCceecccCCCCCCccEEEE
Confidence 22222 10 00111234889999988899999999999986422 122322 221112222211234577999988
Q ss_pred EecCcc---cccccHHHHHHHHHHHhCcCC-cceeecccc
Q 010583 252 HLRDEA---GEYLEESKLKELVKKYSEFIN-FPIYIWASK 287 (507)
Q Consensus 252 ~Lk~d~---~e~le~~~i~~lIkkys~fl~-~PI~l~~~k 287 (507)
+-.+.- .+ .+...|+..++.++=..+ .-|.+..+.
T Consensus 173 ~PD~~iF~~~~-f~~~~l~~RlrelA~L~~gl~I~l~d~r 211 (635)
T COG0187 173 KPDPEIFGETE-FDYEILKRRLRELAFLNKGVKITLTDER 211 (635)
T ss_pred EcChHhcCCcc-cCHHHHHHHHHHHhccCCCCEEEEEecc
Confidence 643321 22 366778888887765543 667776544
No 48
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.66 E-value=0.0086 Score=71.63 Aligned_cols=163 Identities=18% Similarity=0.224 Sum_probs=91.6
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH---------HHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK---------NLGTI 172 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~---------~LgtI 172 (507)
.-.+.|+|-||+|-.. | ++ ..-.|.|.++.+++.|+|.|||-||+-+ ++. .|+++
T Consensus 54 ~ki~dEIldNAvDe~~--~-----~g--------~~~~I~V~i~~~dgsIsV~DnGrGIPv~-ih~~~g~~~~ElIft~L 117 (1135)
T PLN03128 54 YKIFDEILVNAADNKQ--R-----DP--------SMDSLKVDIDVEQNTISVYNNGKGIPVE-IHKEEGVYVPELIFGHL 117 (1135)
T ss_pred HHHHHHHHHHHHHHhh--h-----cC--------CCcEEEEEEEcCCCeEEEEecCccccCC-CCCCCCCccceEEEEee
Confidence 3467899999999752 1 11 1237888888777899999999999864 211 12222
Q ss_pred HhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeC-CCeeE--EEEecCCCceEEEECCCCCCCCCCcEE
Q 010583 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKADGAFAISEDTWNEPLGRGTEI 249 (507)
Q Consensus 173 a~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~-~d~~~--~W~s~~~~~f~I~~~~~~~~~~~GT~I 249 (507)
-.||+ |- ...-.-.-|.-|||...+=.++.+++|.+... ++..| .|+. |-..-............+||+|
T Consensus 118 haGgk--Fd----d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~-G~~~~~~p~i~~~~~~~~GT~I 190 (1135)
T PLN03128 118 LTSSN--FD----DNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTN-NMSVKSEPKITSCKASENWTKI 190 (1135)
T ss_pred ccccc--cC----CccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCC-CcccCCCceeccCCCCCCceEE
Confidence 22332 21 01112357999999999999999999999843 22333 3532 1100001111111123589999
Q ss_pred EEEecCcc--cccccHHHHHHH---HHHHhCcCC--cceeecccc
Q 010583 250 RLHLRDEA--GEYLEESKLKEL---VKKYSEFIN--FPIYIWASK 287 (507)
Q Consensus 250 ~L~Lk~d~--~e~le~~~i~~l---Ikkys~fl~--~PI~l~~~k 287 (507)
+..-...- ..-++.+.+..+ +...+.|++ .-|++++++
T Consensus 191 tF~PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnder 235 (1135)
T PLN03128 191 TFKPDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGKK 235 (1135)
T ss_pred EEEECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 87633211 111344443333 333465774 667777643
No 49
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.65 E-value=0.0034 Score=72.83 Aligned_cols=86 Identities=17% Similarity=0.288 Sum_probs=55.5
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
..|..||+||+.+.. .+.+.|.+....+. -.|.|.|||+||+.+++...|....+.
T Consensus 582 ~il~nLi~NAik~~~-----------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~------ 638 (968)
T TIGR02956 582 QVLINLVGNAIKFTD-----------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQA------ 638 (968)
T ss_pred HHHHHHHHHHHhhCC-----------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhcc------
Confidence 477888889887642 13456776666665 679999999999999988655432211
Q ss_pred HhhhccCCCccccccccceeeeeee----cCEEEEEEeeC
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKHN 217 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmV----adkV~V~Sk~~ 217 (507)
.....-|..|+|++-|-.+ +-++.|.|...
T Consensus 639 ------~~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~ 672 (968)
T TIGR02956 639 ------DGRRRSGGTGLGLAISQRLVEAMDGELGVESELG 672 (968)
T ss_pred ------CCCCCCCCccHHHHHHHHHHHHcCCEEEEEecCC
Confidence 1112236789998765443 34566665543
No 50
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=96.64 E-value=0.0024 Score=71.84 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=86.4
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH--H---------HHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--N---------LGT 171 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~--~---------Lgt 171 (507)
-.+.|+|-||+|-.- | ++. ...-.|.|.++ .+.|+|.|||-||+-+--.. . |++
T Consensus 48 hi~~EIldNavDe~~--~-----~~~------g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~ 112 (602)
T PHA02569 48 KIIDEIIDNSVDEAI--R-----TNF------KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTR 112 (602)
T ss_pred eeeehhhhhhhhhhh--c-----cCC------CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEe
Confidence 345699999999642 1 221 12346777777 56899999999998643211 1 222
Q ss_pred HHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCe-eEEEEecCCCceEEEECCCCCCCCCCcEEE
Q 010583 172 IAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIR 250 (507)
Q Consensus 172 Ia~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~-~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~ 250 (507)
. .+|.+ | . ..-.-.-|.-|||...+=.++.+++|+++..+.. ...|.. |. ...+.+.+....+||+|+
T Consensus 113 L-haGgk-F-d----~~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~~~~~q~f~~---G~-~~~~~~~~~~~~~GT~V~ 181 (602)
T PHA02569 113 T-KAGSN-F-D----DTNRVTGGMNGVGSSLTNFFSVLFIGETCDGKNEVTVNCSN---GA-ENISWSTKPGKGKGTSVT 181 (602)
T ss_pred e-ccccc-c-C----CcceeeCCcCCccceeeeccchhhheEEEcCCEEEEEEecC---Cc-ccCCcccCCCCCCccEEE
Confidence 2 22221 3 1 1112246999999988889999999988543322 223432 21 111111233446899998
Q ss_pred EEecCcc---cccc--cHHHHHHHHHHHhCcCC--cceeeccc
Q 010583 251 LHLRDEA---GEYL--EESKLKELVKKYSEFIN--FPIYIWAS 286 (507)
Q Consensus 251 L~Lk~d~---~e~l--e~~~i~~lIkkys~fl~--~PI~l~~~ 286 (507)
..-...- ..|- ..+.|..-++..+ |++ .-|+++++
T Consensus 182 F~PD~~iF~~~~~~~~~~~~l~~Rl~elA-~Ln~Gl~I~l~de 223 (602)
T PHA02569 182 FIPDFSHFEVNGLDQQYLDIILDRLQTLA-VVFPDIKFTFNGK 223 (602)
T ss_pred EEECHHHhCCCccCccHHHHHHHHHHHHh-cCCCCCEEEEEec
Confidence 7644321 1121 1244555555444 444 56666654
No 51
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.63 E-value=0.0066 Score=73.59 Aligned_cols=161 Identities=16% Similarity=0.241 Sum_probs=94.3
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH---------HHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK---------NLGTI 172 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~---------~LgtI 172 (507)
.-.+.|+|-||+|-.. | ++ ..-.|.|.++.+++.|+|.|||-||.-+ ++. .|+++
T Consensus 79 ~kifdEIldNAvDe~~--r-----~g--------~~~~I~V~I~~~~gsIsV~DnGRGIPV~-iH~~eg~~~pElIft~L 142 (1465)
T PLN03237 79 YKIFDEILVNAADNKQ--R-----DP--------KMDSLRVVIDVEQNLISVYNNGDGVPVE-IHQEEGVYVPEMIFGHL 142 (1465)
T ss_pred hhhHHHHhhhhHhHHh--h-----cC--------CCCEEEEEEEcCCCEEEEEecCccccCC-CCCCCCCccceEEEEee
Confidence 3577899999999753 2 11 1236788887777899999999999764 221 12222
Q ss_pred HhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeC-CCeeE--EEEecCC-C-ceEEEECCCCCCCCCCc
Q 010583 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKAD-G-AFAISEDTWNEPLGRGT 247 (507)
Q Consensus 173 a~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~-~d~~~--~W~s~~~-~-~f~I~~~~~~~~~~~GT 247 (507)
-.||+ | ......-.-|..|+|...|=.++.+++|.++.. ++..| .|..+-+ . .-.+.. .....+||
T Consensus 143 hAGgk--F----dd~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~---~~~~~~GT 213 (1465)
T PLN03237 143 LTSSN--Y----DDNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITK---CKKSENWT 213 (1465)
T ss_pred ecccc--C----CCCcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceecc---CCCCCCce
Confidence 22322 2 101112356999999999999999999999833 12333 5653211 1 111222 11236899
Q ss_pred EEEEEecCcc--cccccHHHHHHHHHHH---hCcCC--cceeecccc
Q 010583 248 EIRLHLRDEA--GEYLEESKLKELVKKY---SEFIN--FPIYIWASK 287 (507)
Q Consensus 248 ~I~L~Lk~d~--~e~le~~~i~~lIkky---s~fl~--~PI~l~~~k 287 (507)
+|+..-...- ..-++.+.|..+.++. +.|++ .-|+|++++
T Consensus 214 ~VtF~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 214 KVTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred EEEEEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 9987632211 1123566665554444 45674 677887654
No 52
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.51 E-value=0.0038 Score=65.49 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=45.8
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~ 182 (507)
..+++||+||..+.. ..+.|++..+.+.-.|+|.|||.||+.+++...+...-+ +.
T Consensus 356 ~~l~nli~NA~~~~~------------------~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~-~~----- 411 (461)
T PRK09470 356 SALENIVRNALRYSH------------------TKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYR-VD----- 411 (461)
T ss_pred HHHHHHHHHHHHhCC------------------CcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCcc-CC-----
Confidence 357788888775431 235677666666567999999999999988754422111 00
Q ss_pred hhhccCCCccccccccceeee
Q 010583 183 KMQTSGDLNLIGQFGVGFYSV 203 (507)
Q Consensus 183 ~l~~~~~~~~IGqFGIGf~S~ 203 (507)
......-+.+|+|++-|
T Consensus 412 ----~~~~~~~~g~GlGL~iv 428 (461)
T PRK09470 412 ----EARDRESGGTGLGLAIV 428 (461)
T ss_pred ----cccCCCCCCcchhHHHH
Confidence 01112346789998654
No 53
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.41 E-value=0.011 Score=71.78 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=92.9
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH---------HHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK---------NLGTI 172 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~---------~LgtI 172 (507)
.-.+.|+|-||+|-.. | ++ .....-.|.|.++.+.+.|+|.|||-||.-+- +. .|+++
T Consensus 59 ~ki~dEIldNAvDe~~--r-----~~-----~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~-h~~~~~~~pElIft~L 125 (1388)
T PTZ00108 59 YKIFDEILVNAADNKA--R-----DK-----GGHRMTYIKVTIDEENGEISVYNDGEGIPVQI-HKEHKIYVPEMIFGHL 125 (1388)
T ss_pred hhhHHHHhhhhhhhhc--c-----cC-----CCCCccEEEEEEeccCCeEEEEecCCcccCCC-CCCCCCccceEEEEEe
Confidence 3567899999999763 2 10 01223478888887778999999999997642 21 12333
Q ss_pred HhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCC-Cee--EEEEecCC--CceEEEECCCCCCCCCCc
Q 010583 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQ--YVWESKAD--GAFAISEDTWNEPLGRGT 247 (507)
Q Consensus 173 a~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~-d~~--~~W~s~~~--~~f~I~~~~~~~~~~~GT 247 (507)
..+|+ | ......-.-|.-|+|...+=.++.+++|.+.... +.. -.|+.... ..-.|... ....+||
T Consensus 126 ~aGgk--f----dd~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~~---~~~~~GT 196 (1388)
T PTZ00108 126 LTSSN--Y----DDTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITSY---DGKKDYT 196 (1388)
T ss_pred ecccc--C----CCCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCCC---CCCCCce
Confidence 33332 2 1011223579999999999999999999999761 222 34653211 01122211 1115899
Q ss_pred EEEEEecCcc--cccccHHH---HHHHHHHHhCcC-Ccceeeccc
Q 010583 248 EIRLHLRDEA--GEYLEESK---LKELVKKYSEFI-NFPIYIWAS 286 (507)
Q Consensus 248 ~I~L~Lk~d~--~e~le~~~---i~~lIkkys~fl-~~PI~l~~~ 286 (507)
+|+..-...- ..-++.+. |+.-+...+-.. ..-|+++++
T Consensus 197 ~VtF~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnde 241 (1388)
T PTZ00108 197 KVTFYPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNGE 241 (1388)
T ss_pred EEEEEeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcEEEEeCc
Confidence 9987633221 11234454 444444444333 256666654
No 54
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.30 E-value=0.0048 Score=64.58 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=24.4
Q ss_pred ceEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 010583 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~L 169 (507)
.+.|.+..+.+.-.|+|.|||.||+.+++...+
T Consensus 350 ~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~ 382 (435)
T PRK09467 350 WIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLF 382 (435)
T ss_pred eEEEEEEecCCEEEEEEEecCCCcCHHHHHHhc
Confidence 355665555444579999999999999887544
No 55
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.23 E-value=0.01 Score=62.35 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=48.6
Q ss_pred CCCCh---hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHHHHH
Q 010583 97 LYSNK---DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTI 172 (507)
Q Consensus 97 LYs~~---~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~edL~~~LgtI 172 (507)
+|.++ .-+|..||.||+.+.. ....+.|.+....+. -.|+|.|||.||+.+++...|...
T Consensus 266 v~~d~~~l~qvl~NLl~NAik~~~----------------~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf 329 (380)
T PRK09303 266 VYADQERIRQVLLNLLDNAIKYTP----------------EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDR 329 (380)
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCC----------------CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCc
Confidence 45554 3467788888877652 112334443332232 468999999999999887544211
Q ss_pred HhcCchhHHHhhhccCCCccccccccceeeeeeec
Q 010583 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 207 (507)
Q Consensus 173 a~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVa 207 (507)
-+ . ....-.+..|+|++-|..++
T Consensus 330 ~~-~-----------~~~~~~~G~GLGL~i~~~iv 352 (380)
T PRK09303 330 VR-L-----------PRDEGTEGYGIGLSVCRRIV 352 (380)
T ss_pred ee-C-----------CCCCCCCcccccHHHHHHHH
Confidence 10 0 01122356899998776653
No 56
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=96.12 E-value=0.035 Score=63.39 Aligned_cols=100 Identities=17% Similarity=0.261 Sum_probs=61.4
Q ss_pred CCCCh---hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEc-CCccEEEEEECCCCCCHHHHHHHHHHH
Q 010583 97 LYSNK---DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTI 172 (507)
Q Consensus 97 LYs~~---~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMT~edL~~~LgtI 172 (507)
++.++ .-.|..||.||.++.. ...+.|.+... .+.-.|+|.|||+||+.+++..-|-..
T Consensus 392 v~~d~~~l~qvl~NLl~NAik~~~-----------------~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f 454 (779)
T PRK11091 392 VITDGTRLRQILWNLISNAVKFTQ-----------------QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMY 454 (779)
T ss_pred EEeCHHHHHHHHHHHHHHHHHhCC-----------------CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHh
Confidence 34454 3467789999887752 12356666655 233578999999999999988655433
Q ss_pred HhcCchhHHHhhhccCCCccccccccceeeeee----ecCEEEEEEeeCCCeeE
Q 010583 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYL----VADYVEVISKHNDDKQY 222 (507)
Q Consensus 173 a~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~Fm----VadkV~V~Sk~~~d~~~ 222 (507)
.+... .......|.-|+|++-|-. .+-++.|.|..+.+..+
T Consensus 455 ~~~~~---------~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f 499 (779)
T PRK11091 455 YQVKD---------SHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCF 499 (779)
T ss_pred hcccC---------CCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEE
Confidence 22100 1122335677999876544 34677787775544433
No 57
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.09 E-value=0.009 Score=68.26 Aligned_cols=80 Identities=20% Similarity=0.347 Sum_probs=48.2
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~ 182 (507)
..+..||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+...- +++.
T Consensus 600 ~il~NLI~NAik~s~----------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~-t~~~---- 658 (703)
T TIGR03785 600 QMLDKLVDNAREFSP----------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMV-SVRD---- 658 (703)
T ss_pred HHHHHHHHHHHHHCC----------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCe-ecCC----
Confidence 456678888777652 1223566665555555799999999999998875443211 1110
Q ss_pred hhhccCCCccccccccceeeeeeecC
Q 010583 183 KMQTSGDLNLIGQFGVGFYSVYLVAD 208 (507)
Q Consensus 183 ~l~~~~~~~~IGqFGIGf~S~FmVad 208 (507)
....--+..|+|++-|-.+++
T Consensus 659 -----~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 659 -----QGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred -----CCCCCCCCccHHHHHHHHHHH
Confidence 011112458999987655543
No 58
>PRK10337 sensor protein QseC; Provisional
Probab=96.04 E-value=0.0099 Score=62.64 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=41.5
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHh
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~ 183 (507)
+++.||.||..+.. ... .|.|.... ..|+|.|||.||+++++...+-..-+.
T Consensus 356 vl~Nli~NA~k~~~----------------~~~--~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f~~~-------- 407 (449)
T PRK10337 356 LVRNLLDNAIRYSP----------------QGS--VVDVTLNA--RNFTVRDNGPGVTPEALARIGERFYRP-------- 407 (449)
T ss_pred HHHHHHHHHHhhCC----------------CCC--eEEEEEEe--eEEEEEECCCCCCHHHHHHhcccccCC--------
Confidence 56777777666632 112 34444332 379999999999999888644322111
Q ss_pred hhccCCCccccccccceeeeeee
Q 010583 184 MQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 184 l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
+..-.+..|+|+.-|-.+
T Consensus 408 -----~~~~~~g~GlGL~iv~~i 425 (449)
T PRK10337 408 -----PGQEATGSGLGLSIVRRI 425 (449)
T ss_pred -----CCCCCCccchHHHHHHHH
Confidence 111235589998765444
No 59
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.00 E-value=0.033 Score=64.56 Aligned_cols=89 Identities=25% Similarity=0.405 Sum_probs=55.1
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEc---------------CCccEEEEEECCCCCCHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD---------------KEKKILSIRDRGIGMTKEDLI 166 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d---------------~~~~~L~I~DNGiGMT~edL~ 166 (507)
...+..||+||..+... ...+.|.+... .+.-.|.|.|||+||+.+++.
T Consensus 562 ~qvl~NLl~NAik~~~~----------------~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~ 625 (828)
T PRK13837 562 QQVLMNLCSNAAQAMDG----------------AGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLP 625 (828)
T ss_pred HHHHHHHHHHHHHHccc----------------CCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHH
Confidence 34678899999888641 22345555543 222368999999999999887
Q ss_pred HHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeee----cCEEEEEEeeCCCeeE
Q 010583 167 KNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKHNDDKQY 222 (507)
Q Consensus 167 ~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmV----adkV~V~Sk~~~d~~~ 222 (507)
..|.. |. + .. . +..|+|++.|-.+ +-++.|.|....+..+
T Consensus 626 ~iFe~--------F~---~--~~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f 669 (828)
T PRK13837 626 HIFEP--------FF---T--TR-A--GGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRF 669 (828)
T ss_pred HhhCC--------cc---c--CC-C--CCCcchHHHHHHHHHHCCCEEEEEecCCCeEEE
Confidence 54321 11 0 01 1 6789998766443 4567777765433433
No 60
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=95.98 E-value=0.016 Score=63.96 Aligned_cols=74 Identities=27% Similarity=0.373 Sum_probs=49.9
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
-..|.=||.||.||..+ . .++..+.+.|..+.+.-.|.|.|||+||+++.... +-..|.|.+.
T Consensus 429 itIlGNLidNA~eA~~~-~------------~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~-iFe~G~Stk~--- 491 (537)
T COG3290 429 VTILGNLIDNALEALLA-P------------EENKEIELSLSDRGDELVIEVADTGPGIPPEVRDK-IFEKGVSTKN--- 491 (537)
T ss_pred HHHHHHHHHHHHHHhhc-c------------CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHH-HHhcCccccC---
Confidence 46677899999999973 0 22344555555444445689999999999988874 4345555331
Q ss_pred HhhhccCCCccccccccceeee
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSV 203 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~ 203 (507)
-|.-|+|+|=+
T Consensus 492 -----------~~~rGiGL~Lv 502 (537)
T COG3290 492 -----------TGGRGIGLYLV 502 (537)
T ss_pred -----------CCCCchhHHHH
Confidence 47789998643
No 61
>PRK03660 anti-sigma F factor; Provisional
Probab=95.95 E-value=0.019 Score=51.78 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=31.4
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTK 162 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~ 162 (507)
..++.|++.||+...-. . .....+.|++....+.-.++|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~~~-------~------~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHGYE-------N------NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHhcC-------C------CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 45789999998854310 0 111345666655545557899999999985
No 62
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.80 E-value=0.014 Score=68.61 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=54.8
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCC---ccEEEEEECCCCCCHHHHHHHHHHHHhcCchh
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE---KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSA 179 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~---~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~ 179 (507)
-.|.-||+||..+.. ...+.|.+..... .-.|+|.|||+||+.+++.+-+...-+ .+
T Consensus 568 QVL~NLL~NAik~t~-----------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t-~~-- 627 (894)
T PRK10618 568 KILLLLLNYAITTTA-----------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLN-QT-- 627 (894)
T ss_pred HHHHHHHHHHHHhCC-----------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCcccc-CC--
Confidence 457788888877642 1234555544322 236899999999999998864432211 00
Q ss_pred HHHhhhccCCCccccccccceeeeee----ecCEEEEEEeeCCCeeEE
Q 010583 180 FVEKMQTSGDLNLIGQFGVGFYSVYL----VADYVEVISKHNDDKQYV 223 (507)
Q Consensus 180 f~~~l~~~~~~~~IGqFGIGf~S~Fm----VadkV~V~Sk~~~d~~~~ 223 (507)
.....-+..|+|+.-|-- .+-++.|.|....+..+.
T Consensus 628 --------~~~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~ 667 (894)
T PRK10618 628 --------QGDRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYS 667 (894)
T ss_pred --------CCCCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEE
Confidence 011122457889866543 346778887765444443
No 63
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.57 E-value=0.02 Score=51.10 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=30.8
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCC
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMT 161 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT 161 (507)
..++.||++||..+. +. + .....+.|.+....+.-.|+|.|+|.||+
T Consensus 41 ~~~l~eli~Nai~h~----~~----~-----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 41 KTAVSEAVTNAIIHG----YE----E-----NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHHhc----cC----C-----CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 457889999988542 10 0 11234556665555556789999999997
No 64
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.49 E-value=0.02 Score=63.73 Aligned_cols=55 Identities=27% Similarity=0.450 Sum_probs=41.2
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGT 171 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~Lgt 171 (507)
-.|-=|||||.||++. -..+.++|+..-+.+.-.|+|+|||.|+.++-+...|..
T Consensus 500 QVLvNLl~NALDA~~~--------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFeP 554 (603)
T COG4191 500 QVLVNLLQNALDAMAG--------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEP 554 (603)
T ss_pred HHHHHHHHHHHHHhcC--------------CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCC
Confidence 3455599999999973 223456777766666678999999999999988765543
No 65
>PRK10490 sensor protein KdpD; Provisional
Probab=95.48 E-value=0.027 Score=66.15 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=47.0
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
...|..||+||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...|... .++
T Consensus 780 ~qVL~NLL~NAik~s~----------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF-~~~----- 837 (895)
T PRK10490 780 ERVLINLLENAVKYAG----------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKF-ARG----- 837 (895)
T ss_pred HHHHHHHHHHHHHhCC----------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCC-ccC-----
Confidence 3467788888877642 123355665555455579999999999999887544221 111
Q ss_pred HhhhccCCCccccccccceeeeeee
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
......+..|+|++-|-.+
T Consensus 838 ------~~~~~~~G~GLGL~Ivk~i 856 (895)
T PRK10490 838 ------NKESAIPGVGLGLAICRAI 856 (895)
T ss_pred ------CCCCCCCCccHHHHHHHHH
Confidence 1112234578898766444
No 66
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=95.21 E-value=0.058 Score=62.93 Aligned_cols=162 Identities=22% Similarity=0.287 Sum_probs=90.4
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH-------HHHHHHh
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAK 174 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~-------~LgtIa~ 174 (507)
...+.|+|.||+|-.-. + ..-.|.|.++++ ..|+|.|||-||.-+.-.. ...|+..
T Consensus 131 hhLv~EIlDNSVDE~la--------------G--~~~~I~V~i~~D-gsItV~DnGRGIPvd~h~k~g~s~~E~VlT~Lh 193 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLA--------------G--ECNKITVVLHKD-GSVEISDNGRGIPCDVSEKTGKSGLETVLTVLH 193 (903)
T ss_pred eEEEEEEeeccchhhcc--------------C--CCcEEEEEEcCC-CeEEEEeCCccccccccccCCCcceeEEEEEec
Confidence 44678999999995421 1 123677777654 6899999999998643211 1112233
Q ss_pred cCchhHHHhh---------------------------------hc-c-CC-CccccccccceeeeeeecCEEEEEEeeCC
Q 010583 175 SGTSAFVEKM---------------------------------QT-S-GD-LNLIGQFGVGFYSVYLVADYVEVISKHND 218 (507)
Q Consensus 175 Sgk~~f~~~l---------------------------------~~-~-~~-~~~IGqFGIGf~S~FmVadkV~V~Sk~~~ 218 (507)
+|.+ |-... .. . .. .-.-|.-|||...+=.++.+++|.++..+
T Consensus 194 AGGK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG 272 (903)
T PTZ00109 194 SGGK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG 272 (903)
T ss_pred cCcc-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC
Confidence 3321 21100 00 0 00 12578999999888999999999998754
Q ss_pred CeeE--EEEecCCCceEEEECCCCCC-CCCCcEEEEEec-Cc-ccc-c--------------ccHHHHHHHHHHHhCcCC
Q 010583 219 DKQY--VWESKADGAFAISEDTWNEP-LGRGTEIRLHLR-DE-AGE-Y--------------LEESKLKELVKKYSEFIN 278 (507)
Q Consensus 219 d~~~--~W~s~~~~~f~I~~~~~~~~-~~~GT~I~L~Lk-~d-~~e-~--------------le~~~i~~lIkkys~fl~ 278 (507)
. .| .|+ .|...-.+... +.+ ..+||+|+..-. +. ... . ++.+.|+.-++.++ ||+
T Consensus 273 K-~y~q~F~-rG~~v~pLkvi--g~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElA-fLN 347 (903)
T PTZ00109 273 K-IYSIELS-KGKVTKPLSVF--SCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELS-YLN 347 (903)
T ss_pred E-EEEEEeC-CCcccCCcccc--CCcCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHh-ccC
Confidence 3 23 232 12111011111 122 368999987654 32 111 1 24567777777776 444
Q ss_pred --cceeeccc
Q 010583 279 --FPIYIWAS 286 (507)
Q Consensus 279 --~PI~l~~~ 286 (507)
.-|+++++
T Consensus 348 pGL~I~L~De 357 (903)
T PTZ00109 348 PGLTFYLVDE 357 (903)
T ss_pred CCcEEEEEec
Confidence 55566553
No 67
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.09 E-value=0.036 Score=63.80 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=53.5
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEc--CCc---cEEEEEECCCCCCHHHHHHHHHHHHhcCc
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD--KEK---KILSIRDRGIGMTKEDLIKNLGTIAKSGT 177 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d--~~~---~~L~I~DNGiGMT~edL~~~LgtIa~Sgk 177 (507)
..|..||+||..+.. ...+.|++... .++ -.|+|.|||+||+++++.+.+-..-+...
T Consensus 411 ~vl~NLl~NAik~~~-----------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 473 (919)
T PRK11107 411 QIITNLVGNAIKFTE-----------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADA 473 (919)
T ss_pred HHHHHHHHHHhhcCC-----------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCC
Confidence 357788888877642 12334554432 221 25899999999999998765533221110
Q ss_pred hhHHHhhhccCCCccccccccceeeeeee----cCEEEEEEeeCCCee
Q 010583 178 SAFVEKMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKHNDDKQ 221 (507)
Q Consensus 178 ~~f~~~l~~~~~~~~IGqFGIGf~S~FmV----adkV~V~Sk~~~d~~ 221 (507)
......|..|+|++-|-.+ +-++.|.|....+..
T Consensus 474 ----------~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~ 511 (919)
T PRK11107 474 ----------SISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGST 511 (919)
T ss_pred ----------CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEE
Confidence 1112346789998765443 356677766543333
No 68
>PRK09835 sensor kinase CusS; Provisional
Probab=94.98 E-value=0.035 Score=58.72 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=24.9
Q ss_pred ceEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 010583 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~L 169 (507)
.+.|++..+.+.-.|+|.|||.||+++++...+
T Consensus 396 ~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if 428 (482)
T PRK09835 396 AITVRCQEVDHQVQLVVENPGTPIAPEHLPRLF 428 (482)
T ss_pred eEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHh
Confidence 356666555555679999999999999888544
No 69
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.95 E-value=0.042 Score=64.80 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=54.8
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~ 182 (507)
-.|.-||+||..+.. ...+.|.+..+.+.-.|+|.|||+||+.+++.+.+....+.+.
T Consensus 565 qvl~NLl~NAik~t~-----------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~----- 622 (924)
T PRK10841 565 QVISNLLSNAIKFTD-----------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGT----- 622 (924)
T ss_pred HHHHHHHHHHHhhCC-----------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCC-----
Confidence 467788888877642 1234566655544457899999999999998865532211110
Q ss_pred hhhccCCCccccccccceeeeeee----cCEEEEEEeeCCCe
Q 010583 183 KMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKHNDDK 220 (507)
Q Consensus 183 ~l~~~~~~~~IGqFGIGf~S~FmV----adkV~V~Sk~~~d~ 220 (507)
......+..|+|++-|-.+ .-++.|.|....+.
T Consensus 623 -----~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt 659 (924)
T PRK10841 623 -----GVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGS 659 (924)
T ss_pred -----CCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcE
Confidence 1112235679998766543 35666766654333
No 70
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.90 E-value=0.04 Score=53.25 Aligned_cols=49 Identities=29% Similarity=0.462 Sum_probs=36.4
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~ 167 (507)
...|..||+||.+|+. .+.+.|.+....+.-.|.|.|||.||+++.+..
T Consensus 230 ~~vl~nLi~NAi~~~~-----------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 230 RQVLVNLLSNAIKYTP-----------------GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHHhccCC-----------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 4578999999999983 123455555443345799999999999999664
No 71
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=94.89 E-value=0.034 Score=66.45 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=49.5
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEE---cCCc--cEEEEEECCCCCCHHHHHHHHHHHHhcC
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL---DKEK--KILSIRDRGIGMTKEDLIKNLGTIAKSG 176 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~---d~~~--~~L~I~DNGiGMT~edL~~~LgtIa~Sg 176 (507)
...|..||.||+++... ..+.|.+.. +.+. -.|+|.|||+||+.+++..-|....+ +
T Consensus 830 ~qvl~NLl~NAik~~~~-----------------g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~-~ 891 (1197)
T PRK09959 830 KQVLSNLLSNALKFTTE-----------------GAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQ-T 891 (1197)
T ss_pred HHHHHHHHHHHHHhCCC-----------------CCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccc-c
Confidence 34678999999888631 123344332 2222 24799999999999988754422111 1
Q ss_pred chhHHHhhhccCCCccccccccceeeeeee----cCEEEEEEee
Q 010583 177 TSAFVEKMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKH 216 (507)
Q Consensus 177 k~~f~~~l~~~~~~~~IGqFGIGf~S~FmV----adkV~V~Sk~ 216 (507)
+ .....+..|+|++-|-.+ .-++.|.|..
T Consensus 892 ~-----------~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~ 924 (1197)
T PRK09959 892 S-----------AGRQQTGSGLGLMICKELIKNMQGDLSLESHP 924 (1197)
T ss_pred c-----------cCCCCCCcCchHHHHHHHHHHcCCEEEEEeCC
Confidence 0 111235689998766444 3445555543
No 72
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.47 E-value=0.077 Score=46.48 Aligned_cols=81 Identities=19% Similarity=0.331 Sum_probs=54.5
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
..++.|++.||+.+... . .....+.|++..+.+.-.|.|.|+|.|++...+.... .
T Consensus 33 ~lav~E~~~Nav~H~~~---------~----~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~-------~---- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYP---------G----DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPD-------P---- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCC---------C----CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcc-------c----
Confidence 45788999999998852 0 1124566777777777789999999999877554211 0
Q ss_pred HhhhccCCCccccccccceeeeeeecCEEEE
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 212 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V 212 (507)
........-|.|++-+=.++|++.+
T Consensus 89 ------~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 ------WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred ------ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0012334556666666677899988
No 73
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=94.04 E-value=0.082 Score=53.64 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=32.5
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcC-----C-----ccEEEEEECCCCCCHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-----E-----KKILSIRDRGIGMTKEDLIK 167 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~-----~-----~~~L~I~DNGiGMT~edL~~ 167 (507)
..+++.||+||..|... ....+.|.+.... . .-.|.|.|||.||+.+.+..
T Consensus 239 ~~vl~nLl~NA~~~~~~---------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 299 (348)
T PRK11073 239 EQVLLNIVRNALQALGP---------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDT 299 (348)
T ss_pred HHHHHHHHHHHHHHhcc---------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhh
Confidence 45788999999998731 1122333332110 0 12589999999999987764
No 74
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=93.91 E-value=0.1 Score=48.76 Aligned_cols=88 Identities=20% Similarity=0.333 Sum_probs=53.0
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
..++.|++.||+...-+ + .....+.|.+....+.-.+.|.|+|.||+...+...+.. ...
T Consensus 44 ~lav~Ea~~Nai~Hg~~-------~------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p---~~~---- 103 (161)
T PRK04069 44 KIAVSEACTNAVQHAYK-------E------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGP---YDI---- 103 (161)
T ss_pred HHHHHHHHHHHHHhccC-------C------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCC---CCC----
Confidence 35889999999998742 0 112345666666656668999999999997765532210 000
Q ss_pred HhhhccCCCccccccccceeeeeeecCEEEEEE
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVIS 214 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~S 214 (507)
......-..-|+|++-+-.++|++.+.+
T Consensus 104 -----~~~~~~~~~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 104 -----SKPIEDLREGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred -----CCcccccCCCceeHHHHHHHHHhEEEEc
Confidence 0001111123777766666778777653
No 75
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=93.85 E-value=0.074 Score=49.71 Aligned_cols=88 Identities=23% Similarity=0.360 Sum_probs=54.3
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
..++.|++.||+.+.-. . .....+.|.+..+.+.-.+.|.|+|.||+...+...+. ....
T Consensus 44 ~lav~Ea~~Nai~ha~~---------~----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~---- 103 (159)
T TIGR01924 44 KIAVSEACTNAVKHAYK---------E----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDG---- 103 (159)
T ss_pred HHHHHHHHHHHHHhccC---------C----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCC----
Confidence 34889999999887631 0 12334666666665556789999999998776553111 0000
Q ss_pred HhhhccCCCccccccccceeeeeeecCEEEEEE
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVIS 214 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~S 214 (507)
......-..-|.|++-+=.++|.+.+.+
T Consensus 104 -----~~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 104 -----SEPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred -----CCCcccCCCCccCHHHHHHhccEEEEEe
Confidence 0011111234788877777889888865
No 76
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=93.55 E-value=0.14 Score=57.49 Aligned_cols=55 Identities=22% Similarity=0.470 Sum_probs=39.8
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCcc--EEEEEECCCCCCHHHHHHHH
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK--ILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~--~L~I~DNGiGMT~edL~~~L 169 (507)
++-=||+||.+|++.... .+.+...|+++.+..+. .+.|.|||.|++.+++++.+
T Consensus 604 vf~NliKNA~EAi~~~~~-----------~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~ 660 (712)
T COG5000 604 VFGNLLKNAAEAIEAVEA-----------EERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRAL 660 (712)
T ss_pred HHHHHHHhHHHHhhhccc-----------ccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhc
Confidence 445699999999986432 11122267887765543 58999999999999998755
No 77
>PRK10547 chemotaxis protein CheA; Provisional
Probab=93.43 E-value=0.3 Score=55.99 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=33.8
Q ss_pred HHHhhhcHHHHHHH---HHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 010583 105 LRELISNASDALDK---IRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (507)
Q Consensus 105 LRELIqNA~DA~~k---~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~ 167 (507)
|..||.||+|+.-. .|.. .|......+.|+.....+.-.|+|.|+|.||+.+.+..
T Consensus 390 L~hLirNAidHgie~p~~R~~-------~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLA-------AGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHh-------cCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 56899999999621 1110 11111223444443333334689999999999988764
No 78
>PRK13557 histidine kinase; Provisional
Probab=93.20 E-value=0.16 Score=54.27 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=16.8
Q ss_pred EEEEEECCCCCCHHHHHHHH
Q 010583 150 ILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 150 ~L~I~DNGiGMT~edL~~~L 169 (507)
.|+|.|||.||+.+.+..-|
T Consensus 326 ~i~v~D~G~Gi~~~~~~~if 345 (540)
T PRK13557 326 SIAVTDTGSGMPPEILARVM 345 (540)
T ss_pred EEEEEcCCCCCCHHHHHhcc
Confidence 69999999999998877533
No 79
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=92.67 E-value=0.44 Score=50.83 Aligned_cols=125 Identities=23% Similarity=0.272 Sum_probs=75.9
Q ss_pred hhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhH
Q 010583 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (507)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f 180 (507)
-.-.|-||..||..|.=+.- ..++ ..-+++.|.|...++.-.+.|+|.|=|++..++.. |..-..|.-..
T Consensus 261 L~ymlfElfKNamrATve~h---~~~~-----~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~dr-lf~Y~ySTa~~- 330 (414)
T KOG0787|consen 261 LYYMLFELFKNAMRATVEHH---GDDG-----DELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDR-LFSYMYSTAPA- 330 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHh---ccCC-----CCCCCeEEEEecCCcceEEEEecCCCCcChhHHHH-HHhhhcccCCC-
Confidence 35688999999999985421 1111 11456777777777778999999999999999885 44555553221
Q ss_pred HHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEECCCCCCCCCCcEEEEEecCccccc
Q 010583 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEY 260 (507)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~ 260 (507)
.........+.-.||.|+--+=++|.. . +|...+... .+.||.+.++||....+.
T Consensus 331 --~~~d~~~~~plaGfG~GLPisrlYa~y-------f-----------~Gdl~L~Sl-----eG~GTD~yI~Lk~ls~~~ 385 (414)
T KOG0787|consen 331 --PSSDNNRTAPLAGFGFGLPISRLYARY-------F-----------GGDLKLQSL-----EGIGTDVYIYLKALSMEA 385 (414)
T ss_pred --CCCCCCCcCcccccccCCcHHHHHHHH-------h-----------CCCeeEEee-----eccccceEEEeccCCccc
Confidence 011111245667788886433222211 1 122222222 267999999999766544
No 80
>PRK13560 hypothetical protein; Provisional
Probab=92.22 E-value=0.15 Score=57.43 Aligned_cols=47 Identities=28% Similarity=0.452 Sum_probs=29.8
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCc-cEEEEEECCCCCCHH
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKE 163 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~e 163 (507)
.|.+|++||+.+... + .....+.|.+....++ -.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~-------~------~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP-------D------GAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc-------C------CCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999987631 0 1112334444333122 468999999999874
No 81
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=91.77 E-value=0.29 Score=48.54 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=34.7
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCc--cEEEEEECCCCCCHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK--KILSIRDRGIGMTKE 163 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~--~~L~I~DNGiGMT~e 163 (507)
.++-||++||.-+..- . .....++|.+..+.++ ..++|.|||.|+..+
T Consensus 125 liv~EL~tNa~Khaf~------~-------~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHAFL------S-------RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhcCC------C-------CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 4677999999877641 0 2345566777776665 579999999999853
No 82
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=90.91 E-value=0.23 Score=57.19 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=73.2
Q ss_pred HHHHhhhcHHHHHH----HHHhhhccCccccCCCCCCceEEEEEEcCCcc--EEEEEECCCCCCHHHHHHHHHHHHhcCc
Q 010583 104 FLRELISNASDALD----KIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK--ILSIRDRGIGMTKEDLIKNLGTIAKSGT 177 (507)
Q Consensus 104 fLRELIqNA~DA~~----k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~--~L~I~DNGiGMT~edL~~~LgtIa~Sgk 177 (507)
.|.=||=||+|.+= .||. . +-.+...|.+.....++ .|.|+|+|.|++++-|...-..=|-- +
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a--------~--GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli-~ 504 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRA--------A--GKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLI-T 504 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHH--------c--CCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCC-C
Confidence 35568889999972 3332 1 23455688888765554 47999999999999887532110000 0
Q ss_pred hhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeC-CCeeE--EEEecCCCceEEEECCCCCCCCCCcEEEEEec
Q 010583 178 SAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (507)
Q Consensus 178 ~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~-~d~~~--~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk 254 (507)
.+-.+.|. +.. -+-+=|.+.|.-|++|+=.|+++ |-.-+ ..+. -+|..+|.. ..++||+++|.|-
T Consensus 505 ~~~a~~lS---d~E---i~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~-LgG~I~V~S-----~~G~GT~Fti~LP 572 (716)
T COG0643 505 EEEAETLS---DEE---ILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQ-LGGSISVSS-----EPGKGTTFTIRLP 572 (716)
T ss_pred hHHhccCC---HHH---HHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHH-cCCEEEEEe-----cCCCCeEEEEecC
Confidence 00000011 100 11123677888899998778764 21100 0111 245666665 3488999999876
No 83
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=90.76 E-value=0.3 Score=53.96 Aligned_cols=27 Identities=19% Similarity=0.486 Sum_probs=19.7
Q ss_pred ceEEEEEEcCCccEEEEEECCCCCCHH
Q 010583 137 KLEIQIKLDKEKKILSIRDRGIGMTKE 163 (507)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~e 163 (507)
.+.|++..+.+.-.|+|.|||+||+.+
T Consensus 489 ~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 489 EVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred eEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 355666555444579999999999974
No 84
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=90.67 E-value=0.36 Score=54.49 Aligned_cols=72 Identities=19% Similarity=0.333 Sum_probs=44.3
Q ss_pred EEEEEEc--CCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeec----CEEEE
Q 010583 139 EIQIKLD--KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA----DYVEV 212 (507)
Q Consensus 139 ~I~I~~d--~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVa----dkV~V 212 (507)
.|.|..+ .+..++.|.|||+|++.+-+.+-|.-.-+-+ .....-| -|+|+.-|-.++ -++-|
T Consensus 658 ~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~-----------s~~~y~g-tG~GL~I~kkI~e~H~G~i~v 725 (750)
T COG4251 658 DIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLH-----------SRDEYLG-TGLGLAICKKIAERHQGRIWV 725 (750)
T ss_pred ceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcC-----------chhhhcC-CCccHHHHHHHHHHhCceEEE
Confidence 4555443 3456899999999999998876554322211 1223445 899987765543 45666
Q ss_pred EEeeCCCeeE
Q 010583 213 ISKHNDDKQY 222 (507)
Q Consensus 213 ~Sk~~~d~~~ 222 (507)
.|+..++.++
T Consensus 726 Es~~gEgsTF 735 (750)
T COG4251 726 ESTPGEGSTF 735 (750)
T ss_pred eecCCCceeE
Confidence 6665443443
No 85
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=90.22 E-value=0.24 Score=54.40 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=27.8
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHH
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE 163 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~e 163 (507)
.+.|++.||..+.. ...+.|++..+.+.-.|+|+|||.||+.+
T Consensus 414 il~nlL~NAiKha~-----------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD-----------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC-----------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 45677777665432 12345555555444579999999999853
No 86
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.12 E-value=0.19 Score=52.48 Aligned_cols=48 Identities=17% Similarity=0.284 Sum_probs=36.6
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI 166 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~ 166 (507)
..+++|.|+||.-... ...+.|++..+.+.-+|+|.|||.|.+.+...
T Consensus 281 ~rivQEaltN~~rHa~-----------------A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~~ 328 (365)
T COG4585 281 FRIVQEALTNAIRHAQ-----------------ATEVRVTLERTDDELRLEVIDNGVGFDPDKEG 328 (365)
T ss_pred HHHHHHHHHHHHhccC-----------------CceEEEEEEEcCCEEEEEEEECCcCCCccccC
Confidence 4688999999876653 23567777777777789999999999976543
No 87
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=88.42 E-value=1.5 Score=40.96 Aligned_cols=84 Identities=25% Similarity=0.358 Sum_probs=54.3
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
.+++-|++.||+-+.-+. +| +...+.|....+.+.-.++|.|.|.|+. ++...++.-
T Consensus 42 ~~av~E~~~N~v~Ha~~~------~~------~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~--------- 98 (146)
T COG2172 42 AIAVSEALTNAVKHAYKL------DP------SEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG--------- 98 (146)
T ss_pred HHHHHHHHHHHHHHHhhc------CC------CCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC---------
Confidence 678999999999987530 11 1245677777777777899999996665 554433211
Q ss_pred HhhhccCCCcccccc---ccceeeeeeecCEEEEEEee
Q 010583 182 EKMQTSGDLNLIGQF---GVGFYSVYLVADYVEVISKH 216 (507)
Q Consensus 182 ~~l~~~~~~~~IGqF---GIGf~S~FmVadkV~V~Sk~ 216 (507)
....+.- |.||+-+=-+.|+|.+....
T Consensus 99 --------~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 99 --------DTTAEGLQEGGLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred --------CCCCcccccccccHHHHhhhheeEEEEecc
Confidence 1223333 67776665577888887544
No 88
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=85.39 E-value=3.5 Score=44.84 Aligned_cols=56 Identities=25% Similarity=0.292 Sum_probs=40.6
Q ss_pred CCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCc--cEEEEEECCCCCCHHHHHH
Q 010583 98 YSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK--KILSIRDRGIGMTKEDLIK 167 (507)
Q Consensus 98 Ys~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~--~~L~I~DNGiGMT~edL~~ 167 (507)
+-+|...|-=||.||.-|+-+. ..+...|.|..-..+ -.+.|.|||+||++.-+..
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~--------------~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEP--------------KRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred ccCchHHHhHHHHHHHHHhccc--------------CCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 5588889999999999999541 223445666543332 4689999999999887663
No 89
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=82.69 E-value=2.4 Score=49.45 Aligned_cols=57 Identities=19% Similarity=0.367 Sum_probs=40.8
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHh
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAK 174 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~ 174 (507)
+-+|-=||.||.-.. ....++.|.+..+.+.-.+.|.|||-|++.+++.+-|-+..+
T Consensus 777 eQVLiNLleNA~Kya----------------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r 833 (890)
T COG2205 777 EQVLINLLENALKYA----------------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYR 833 (890)
T ss_pred HHHHHHHHHHHHhhC----------------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhc
Confidence 345666777775432 233456677667766678999999999999999987766554
No 90
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=80.28 E-value=1.9 Score=48.06 Aligned_cols=43 Identities=21% Similarity=0.504 Sum_probs=30.6
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHH
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE 163 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~e 163 (507)
.+||-++||.-.-. ...+.|.+....+.-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa~-----------------As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHAQ-----------------ASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhcc-----------------cCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 57999999865532 12455666655555689999999999854
No 91
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=78.81 E-value=2.1 Score=46.58 Aligned_cols=42 Identities=26% Similarity=0.450 Sum_probs=26.0
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcC-CccEEEEEECCCCCCH
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIGMTK 162 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~-~~~~L~I~DNGiGMT~ 162 (507)
.+.+|+.||..+.. ...+.|.+.... +.-.|.|.|||+||+.
T Consensus 475 v~~nll~NA~k~~~-----------------~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 475 IIREATLNAIKHAN-----------------ASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHhcCC-----------------CCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 46777777665421 123455554442 2346899999999985
No 92
>PRK13559 hypothetical protein; Provisional
Probab=78.13 E-value=2.4 Score=43.43 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=27.6
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcC--CccEEEEEECCCCCCH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK--EKKILSIRDRGIGMTK 162 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~--~~~~L~I~DNGiGMT~ 162 (507)
..|.||+.||+.+... + .....+.|.+.... +.-.|.+.|||.||+.
T Consensus 270 ~vl~nLi~NA~k~~~~------~-------~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 270 LVLHELAVNAIKHGAL------S-------ADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHHhHHHhccc------c-------CCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 3778999999776421 0 11223444441132 2346888999999654
No 93
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=78.09 E-value=1.8 Score=50.20 Aligned_cols=95 Identities=25% Similarity=0.293 Sum_probs=56.9
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEE--EcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIK--LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~--~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f 180 (507)
-++-|||.||+|-+..++ +...-. .-.+..+|.|. .-... .|.|+|.||..+-+..++.....+ +.+
T Consensus 149 ~a~aeLldnalDEi~~~~--tf~~vd----~I~p~~d~~i~a~~v~~~---~~s~~gg~~~~~~i~~~m~l~~~~-k~e- 217 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGA--TFVRVD----YINPVMDIFIRALVVQLK---RISDDGGGMKPEVIRKCMSLGYSS-KKE- 217 (775)
T ss_pred Chhhhhcccccccccccc--ceEEee----eecccccccceeEEeecc---ceeccccccCHHHHHHHHHhhhhh-hhh-
Confidence 467899999999886422 110000 01111122111 11011 167899999999999887654433 322
Q ss_pred HHhhhccCCCccccccccceeeeee-ecCEEEEEEee
Q 010583 181 VEKMQTSGDLNLIGQFGVGFYSVYL-VADYVEVISKH 216 (507)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGf~S~Fm-VadkV~V~Sk~ 216 (507)
...-+||+|.||.++.| ++-.+.|.+|.
T Consensus 218 --------~~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 218 --------ANSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred --------hhhhhhhhccccccchhhhccceeEeehh
Confidence 13578999999987766 77777788873
No 94
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=75.08 E-value=4.7 Score=43.19 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=36.6
Q ss_pred eEEEEEEcCCc--cEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceee
Q 010583 138 LEIQIKLDKEK--KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYS 202 (507)
Q Consensus 138 ~~I~I~~d~~~--~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S 202 (507)
.+|.+...... -.|+|.|+|+|++++++.+-|-..-+-.+. .....|.-|.|++-
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA----------RsR~~gGTGLGLaI 418 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA----------RSRKMGGTGLGLAI 418 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh----------hhhcCCCCchhHHH
Confidence 35555554433 358999999999999999877655432221 22356888888753
No 95
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=67.44 E-value=8.1 Score=42.78 Aligned_cols=51 Identities=31% Similarity=0.207 Sum_probs=35.7
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcC---CccEEEEEECCCCCCHHHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~---~~~~L~I~DNGiGMT~edL~~~L 169 (507)
+-++--||-||+|||.. . ...|.+..+. +.-.|-|.|||-|...+=+.+.|
T Consensus 566 eQVlvNl~~NaldA~~h----------------~-~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl 619 (673)
T COG4192 566 EQVLVNLIVNALDASTH----------------F-APWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLL 619 (673)
T ss_pred HHHHHHHHHHHHhhhcc----------------C-CceEEEEeecCcccceEEEEecCCCCCchhHHHHhc
Confidence 34566799999999973 1 1356666543 33579999999999876665433
No 96
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=65.72 E-value=7.1 Score=43.14 Aligned_cols=88 Identities=28% Similarity=0.397 Sum_probs=56.3
Q ss_pred hcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECC---CCCCHHHHHHHHHH
Q 010583 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRG---IGMTKEDLIKNLGT 171 (507)
Q Consensus 95 ~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNG---iGMT~edL~~~Lgt 171 (507)
...+.-|..+|||+|.||+=.-+ | +.+ ...++|.|..| .|.|.-.| .|||.+++.++
T Consensus 265 ~~v~dyP~~alREai~NAv~HRD---Y---s~~-------~~~v~I~iydD----RieI~NPGgl~~gi~~~~l~~~--- 324 (467)
T COG2865 265 VEVWDYPLEALREAIINAVIHRD---Y---SIR-------GRNVHIEIYDD----RIEITNPGGLPPGITPEDLLKG--- 324 (467)
T ss_pred eecccCCHHHHHHHHHHHHHhhc---c---ccC-------CCceEEEEECC----eEEEECCCCCCCCCChhHcccC---
Confidence 44666799999999999875543 2 111 12455555433 89999988 69999998863
Q ss_pred HHhcCchh-HHHhhhccCCCccccccccceeeeeee
Q 010583 172 IAKSGTSA-FVEKMQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 172 Ia~Sgk~~-f~~~l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
+|-.++ .+.++- .+.++|=+.|.|+-=.|-.
T Consensus 325 --~s~~RNp~LA~~l--~~~~liE~~GSGi~rm~~~ 356 (467)
T COG2865 325 --RSKSRNPVLAKVL--RDMGLIEERGSGIRRMFDL 356 (467)
T ss_pred --CCcccCHHHHHHH--HHhhhHHHhCccHHHHHHH
Confidence 443332 222221 3568899999998544433
No 97
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=63.15 E-value=11 Score=44.08 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=70.1
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHH--------HHHHHHHh
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI--------KNLGTIAK 174 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~--------~~LgtIa~ 174 (507)
-..-|.+-||.| - .| |++. -.|.+.++++.+.++|.+||-|+.-+... -.||....
T Consensus 56 ki~dEilvNaad-k--~r-----d~~m--------~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Llt 119 (842)
T KOG0355|consen 56 KIFDEILVNAAD-K--QR-----DPKM--------NTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLT 119 (842)
T ss_pred HHHHHHhhcccc-c--cc-----CCCc--------ceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhh
Confidence 455699999999 3 23 3332 26888889999999999999999755321 13455555
Q ss_pred cCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCC-e--eEEEEecCC--CceEEEECCCCCCCCCCcEE
Q 010583 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-K--QYVWESKAD--GAFAISEDTWNEPLGRGTEI 249 (507)
Q Consensus 175 Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d-~--~~~W~s~~~--~~f~I~~~~~~~~~~~GT~I 249 (507)
|+.= ......-.-|+-|.|-.-|=..+-+..|.|..... . ...|..+=. ..-.+... ..+.+|.|
T Consensus 120 ssny------~d~ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~----~~~~yTki 189 (842)
T KOG0355|consen 120 SSNY------DDDEKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPS----TDEDYTKI 189 (842)
T ss_pred cccc------CCCccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecC----CCCCcceE
Confidence 5431 10112224466677766666666666666654311 1 234654321 11122221 11339998
Q ss_pred EEE
Q 010583 250 RLH 252 (507)
Q Consensus 250 ~L~ 252 (507)
++.
T Consensus 190 tF~ 192 (842)
T KOG0355|consen 190 TFS 192 (842)
T ss_pred EeC
Confidence 874
No 98
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=48.09 E-value=20 Score=38.28 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=40.2
Q ss_pred hcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHH
Q 010583 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI 166 (507)
Q Consensus 95 ~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~ 166 (507)
..|-+...+.|.-.+|-|.-.+++ . .....+.|.+.-..+.-+++|+|||.|++-.++.
T Consensus 350 ~~l~~e~~talyRv~QEaltNIEr--H-----------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 350 GKLKPEVATALYRVVQEALTNIER--H-----------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHh--h-----------cCCeEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 345556677888889999888874 2 1122345555545555689999999999976554
No 99
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=42.66 E-value=21 Score=41.89 Aligned_cols=52 Identities=27% Similarity=0.456 Sum_probs=35.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeee-eeecCEEEEEEeeC
Q 010583 151 LSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSV-YLVADYVEVISKHN 217 (507)
Q Consensus 151 L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~-FmVadkV~V~Sk~~ 217 (507)
|+..|+|.||+.+++...+- | ......||++|=|+.|. +-.+..+.+.|+..
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~---------f------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~ 54 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN---------F------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKE 54 (775)
T ss_pred cccccCCCCcCchhhhhhhh---------h------cccccccccccCcccccccccCcccceeeccc
Confidence 57889999999999986442 1 11345678888887764 44666666666654
No 100
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=41.09 E-value=32 Score=37.30 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=20.8
Q ss_pred CceEEEEEEcCCccEEEEEECCCCCC
Q 010583 136 TKLEIQIKLDKEKKILSIRDRGIGMT 161 (507)
Q Consensus 136 ~~~~I~I~~d~~~~~L~I~DNGiGMT 161 (507)
..++|.+..+.+.-.+.|.|||+|++
T Consensus 429 S~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 429 SAVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred ceEEEEEeeCCcEEEEEEecCCcCCC
Confidence 35677777776666899999999987
No 101
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=28.66 E-value=1e+02 Score=33.49 Aligned_cols=50 Identities=20% Similarity=0.414 Sum_probs=34.8
Q ss_pred CceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEE
Q 010583 136 TKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (507)
Q Consensus 136 ~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV 210 (507)
.+..|.|.+. .+.-+.| ||.-|+.-+|...|..|| |++|||+. =+|-+++
T Consensus 211 ~p~~v~i~F~-~G~pv~i--ng~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~ve~r~ 260 (394)
T TIGR00032 211 EPEVVTIDFE-QGVPVAL--NGVSLDPVELILEANEIA--------------------GKHGVGRI--DIIENRI 260 (394)
T ss_pred CCeEEEEEEE-cceEEEE--CCccCCHHHHHHHHHHHH--------------------HhcccCcc--ccccccc
Confidence 3456777765 3445555 899999999998887665 88899974 3444443
No 102
>PF14501 HATPase_c_5: GHKL domain
Probab=27.47 E-value=1.1e+02 Score=25.78 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=25.1
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCC
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIG 159 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiG 159 (507)
.|-=|+.||.+|+.+. ...+.+.|.+....+.-.|+|...-.+
T Consensus 9 il~nlldNAiea~~~~-------------~~~~~I~i~~~~~~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 9 ILGNLLDNAIEACKKY-------------EDKRFISISIREENGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHhc-------------CCCcEEEEEEEecCCEEEEEEEECCCC
Confidence 4455899999999751 113345555555443345666666444
No 103
>PRK13820 argininosuccinate synthase; Provisional
Probab=27.34 E-value=1.1e+02 Score=33.26 Aligned_cols=49 Identities=31% Similarity=0.464 Sum_probs=35.3
Q ss_pred ceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEE
Q 010583 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (507)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV 210 (507)
+..|.|.+.+ +.-+.| ||.-|+.-+|...|..|| |++|||+. -+|-+++
T Consensus 212 p~~v~i~F~~-G~pv~l--ng~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~ve~r~ 260 (394)
T PRK13820 212 PEIVEIEFEE-GVPVAI--NGEKMDGVELIRKLNEIA--------------------GKHGVGRT--DMMEDRV 260 (394)
T ss_pred CeEEEEEEEc-cEEEEE--CCeeCCHHHHHHHHHHHH--------------------hhcccCcc--ccccccc
Confidence 4467777653 344555 899999999998887665 88999985 4555555
No 104
>PRK04527 argininosuccinate synthase; Provisional
Probab=25.82 E-value=1.2e+02 Score=33.24 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=35.4
Q ss_pred ceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEE
Q 010583 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (507)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV 210 (507)
+..|.|.+.+ +.-+.| ||.-|+.-+|...|..|| |++|||+. =+|-+++
T Consensus 215 p~~v~i~Fe~-G~pv~l--nG~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~vEnr~ 263 (400)
T PRK04527 215 ALTVTIKFVE-GEAVAL--DGKPLPGAQILAKLNKLF--------------------AQYGVGRG--VYTGDTV 263 (400)
T ss_pred CeEEEEEEEc-cEEEEE--CCEeCCHHHHHHHHHHHH--------------------hhcccCce--eeecccc
Confidence 4477777753 344555 899999999998887766 88999985 4454444
No 105
>PRK00509 argininosuccinate synthase; Provisional
Probab=25.63 E-value=1.2e+02 Score=33.09 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=35.0
Q ss_pred ceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEE
Q 010583 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (507)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV 210 (507)
+-.|.|.+. .+.-+.| ||.-|+.-+|...|..|| |++|||+. =+|-+++
T Consensus 215 p~~v~i~F~-~G~pval--nG~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~vE~r~ 263 (399)
T PRK00509 215 PEYVEIEFE-KGVPVAI--NGEALSPAELIEELNELA--------------------GKHGIGRI--DIVENRL 263 (399)
T ss_pred CeEEEEEEE-ccEEEEE--cCeeCCHHHHHHHHHHHH--------------------hhcccCcc--ccccccc
Confidence 446777765 3445666 899999999998887665 88999984 4444444
No 106
>PLN00200 argininosuccinate synthase; Provisional
Probab=24.83 E-value=1.3e+02 Score=32.79 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=34.6
Q ss_pred ceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEE
Q 010583 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (507)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV 210 (507)
+-.|.|.+. .+.-+.| ||.-|+.-+|...|..|| |++|||+. -+|-+++
T Consensus 219 p~~v~i~Fe-~G~pv~l--nG~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~vE~r~ 267 (404)
T PLN00200 219 PEYIEIEFE-KGLPVAI--NGKTLSPATLLTKLNEIG--------------------GKHGIGRI--DMVENRF 267 (404)
T ss_pred CeEEEEEEE-ccEEEEE--CCeeCCHHHHHHHHHHHH--------------------hhcccCcc--ccccccc
Confidence 346777765 3345555 899999999998887765 88999984 3444444
No 107
>PF08163 NUC194: NUC194 domain; InterPro: IPR012582 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This is domain B in the catalytic subunit of DNA-dependent protein kinases.; GO: 0003677 DNA binding, 0004677 DNA-dependent protein kinase activity, 0005524 ATP binding, 0006303 double-strand break repair via nonhomologous end joining, 0005634 nucleus
Probab=22.20 E-value=26 Score=37.98 Aligned_cols=49 Identities=12% Similarity=0.350 Sum_probs=32.3
Q ss_pred hhhhhhcccceeecCCCCCCcc----chhhhhcchHHHHHHHHHHHHHHHHHH
Q 010583 437 LLPKYLNFLKGLVDSDTLPLNV----SREMLQQHSSLKTIKKKLIRKALDMIR 485 (507)
Q Consensus 437 llP~yl~Fv~GVVDS~dLplNv----SRE~lQ~~~~l~~irk~l~~k~l~~l~ 485 (507)
-||.|+.|+++.+.....|+|| -|=.+-.-.+++-=.+....-+++++-
T Consensus 305 ~mP~WM~~l~~~l~~~s~~~NIrLFiaKlIiN~~~vF~pyAk~wl~pL~q~vv 357 (394)
T PF08163_consen 305 EMPPWMKFLHKKLSNPSTHLNIRLFIAKLIINTPEVFRPYAKFWLPPLMQLVV 357 (394)
T ss_pred CCCHHHHHHHHHhcCCCCCcceeeeehhhhhcCHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999889999996 221221224444445555555555544
No 108
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=21.92 E-value=1.6e+02 Score=25.25 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=18.8
Q ss_pred echhchhhHHhhcCCCChhHHHHHhhhcHHHHHH
Q 010583 84 AEVSRLMDIIINSLYSNKDIFLRELISNASDALD 117 (507)
Q Consensus 84 ae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~ 117 (507)
.|.-+.+.+|+. |+|.||++.+-
T Consensus 44 p~fPkFLn~LGt-----------eIiEnAVefiL 66 (88)
T PF15144_consen 44 PDFPKFLNLLGT-----------EIIENAVEFIL 66 (88)
T ss_pred CchHHHHHHhhH-----------HHHHHHHHHHH
Confidence 345578888887 89999999995
No 109
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=21.53 E-value=82 Score=24.76 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=26.1
Q ss_pred eecCCCCCCccchhhhhcchHHHH----------------HHHHHHHHHHHHHH
Q 010583 448 LVDSDTLPLNVSREMLQQHSSLKT----------------IKKKLIRKALDMIR 485 (507)
Q Consensus 448 VVDS~dLplNvSRE~lQ~~~~l~~----------------irk~l~~k~l~~l~ 485 (507)
++-||+-...|+|+.++++++|+. |...+.+||++|+.
T Consensus 5 L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 5 LVSSDGQEFEVSREAAKQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEETTSEEEEEEHHHHTTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHH
T ss_pred EEcCCCCEEEeeHHHHHHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHH
Confidence 455777778888888888888776 44556666666654
No 110
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.73 E-value=3.7e+02 Score=25.85 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=48.1
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchh-HH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSA-FV 181 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~-f~ 181 (507)
....|||.||+-.-+ ..++.|..++....-.+.+..---+-|-.+..+.|..|-...-.+ .+
T Consensus 66 Yl~NELiENAVKfra-----------------~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll~~it~gDP~dLli 128 (184)
T COG5381 66 YLANELIENAVKFRA-----------------TGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLLKVITEGDPLDLLI 128 (184)
T ss_pred HHHHHHHHhhhcccC-----------------CCcEEEEEEeccceEEEEecccCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 456799999986543 235667766665555667776666777888887776654433333 34
Q ss_pred HhhhccCCCccccccccceee
Q 010583 182 EKMQTSGDLNLIGQFGVGFYS 202 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S 202 (507)
+.+..+.-..--..=|+|++.
T Consensus 129 eRiEanA~~~d~~gSglGLLT 149 (184)
T COG5381 129 ERIEANALESDCEGSGLGLLT 149 (184)
T ss_pred HHHHhhccCCCCcccccccee
Confidence 444322211122334777753
No 111
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=20.15 E-value=1.9e+02 Score=31.38 Aligned_cols=49 Identities=27% Similarity=0.420 Sum_probs=34.4
Q ss_pred ceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEE
Q 010583 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (507)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV 210 (507)
+-.|.|.+. .+.-+.| ||.-|+.-+|...|..|| |++|||+. =+|-+++
T Consensus 212 p~~v~i~F~-~G~pv~l--ng~~~~~~~li~~lN~i~--------------------g~~GvGr~--d~ve~r~ 260 (385)
T cd01999 212 PEYVEIEFE-KGVPVAL--NGEKLDPVELILELNEIA--------------------GKHGVGRI--DIVENRV 260 (385)
T ss_pred CeEEEEEEE-ccEEEEE--cCeeCCHHHHHHHHHHHH--------------------HhcCcCcc--ccccccc
Confidence 446777665 3444555 999999999998887665 88899984 3444444
Done!