Query 010583
Match_columns 507
No_of_seqs 295 out of 1742
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 2E-107 5E-112 899.1 28.7 412 77-496 3-415 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 1.1E-91 3.9E-96 772.4 30.2 364 76-489 21-389 (666)
3 1y4s_A Chaperone protein HTPG; 100.0 2.1E-90 7.2E-95 751.3 27.5 364 77-496 4-372 (559)
4 2ioq_A Chaperone protein HTPG; 100.0 1.5E-89 5.3E-94 752.5 28.9 364 77-496 4-372 (624)
5 3peh_A Endoplasmin homolog; st 100.0 2.6E-66 8.7E-71 519.8 20.8 265 70-347 16-281 (281)
6 1qy5_A Endoplasmin; GRP94, NEC 100.0 3E-61 1E-65 482.0 15.9 262 75-347 3-269 (269)
7 3nmq_A Heat shock protein HSP 100.0 8.1E-59 2.8E-63 456.7 20.5 212 76-290 15-226 (239)
8 3ied_A Heat shock protein; HSP 100.0 2E-59 6.8E-64 463.3 14.8 209 75-285 22-271 (272)
9 3o0i_A HSP90AA1 protein; HSP90 100.0 9E-55 3.1E-59 431.8 20.2 236 45-294 16-251 (256)
10 3t0h_A Heat shock protein HSP 100.0 5.6E-53 1.9E-57 413.2 18.5 216 76-294 8-223 (228)
11 2gqp_A Endoplasmin; GRP94, HSP 100.0 1.1E-52 3.7E-57 412.7 17.8 212 73-287 5-221 (236)
12 1y6z_A Heat shock protein, put 100.0 2.2E-51 7.7E-56 408.7 12.3 148 347-496 1-148 (263)
13 1usu_A Heat shock protein HSP8 100.0 5E-51 1.7E-55 404.7 12.1 145 347-496 1-145 (260)
14 3pry_A Heat shock protein HSP 100.0 9.9E-51 3.4E-55 403.9 11.3 145 347-496 1-145 (268)
15 1hk7_A Heat shock protein HSP8 100.0 2.9E-50 1E-54 403.8 11.6 143 349-496 1-143 (288)
16 2wer_A ATP-dependent molecular 100.0 5.6E-49 1.9E-53 381.5 18.6 211 77-289 3-213 (220)
17 3hjc_A Heat shock protein 83-1 100.0 3.8E-50 1.3E-54 424.4 11.2 151 341-496 11-161 (444)
18 1yc1_A HSP 86, heat shock prot 100.0 9.7E-49 3.3E-53 390.7 19.0 213 76-291 44-256 (264)
19 2gq0_A Chaperone protein HTPG; 100.0 1.7E-49 5.7E-54 400.7 12.3 143 349-496 2-144 (303)
20 3q6m_A Heat shock protein HSP 100.0 9.4E-48 3.2E-52 405.2 12.3 144 348-496 2-145 (448)
21 2cge_A ATP-dependent molecular 100.0 5.5E-48 1.9E-52 405.2 9.9 143 349-496 1-143 (405)
22 2ior_A Chaperone protein HTPG; 100.0 2.1E-43 7.4E-48 346.2 15.4 205 76-285 23-232 (235)
23 1b63_A MUTL; DNA mismatch repa 99.7 2.8E-18 9.6E-23 175.8 9.9 150 95-276 19-183 (333)
24 1h7s_A PMS1 protein homolog 2; 99.6 3.2E-16 1.1E-20 162.7 5.7 165 86-278 15-196 (365)
25 3h4l_A DNA mismatch repair pro 99.6 8.3E-16 2.8E-20 159.7 2.8 152 95-277 20-185 (367)
26 3na3_A DNA mismatch repair pro 99.4 2E-14 6.9E-19 148.4 0.9 150 95-276 23-187 (348)
27 3fv5_A DNA topoisomerase 4 sub 99.1 1.8E-10 6.2E-15 110.3 9.0 161 100-285 17-190 (201)
28 1mu5_A Type II DNA topoisomera 99.0 2.1E-10 7.1E-15 122.8 6.6 148 102-274 34-196 (471)
29 2zbk_B Type 2 DNA topoisomeras 98.9 6.6E-10 2.3E-14 120.5 6.1 149 102-275 33-196 (530)
30 1kij_A DNA gyrase subunit B; t 98.9 1.2E-09 4.2E-14 114.2 6.8 148 102-274 34-193 (390)
31 1s16_A Topoisomerase IV subuni 98.8 1.7E-08 5.9E-13 105.6 10.8 157 102-284 33-203 (390)
32 2q2e_B Type 2 DNA topoisomeras 98.7 4.1E-09 1.4E-13 116.2 2.6 158 102-285 39-212 (621)
33 1ei1_A DNA gyrase B, GYRB; ATP 98.7 6.7E-08 2.3E-12 101.2 11.0 157 100-284 34-205 (391)
34 4duh_A DNA gyrase subunit B; s 98.6 8.6E-08 2.9E-12 93.1 10.2 156 101-285 36-207 (220)
35 1zxm_A TOPO IIA ATPase, DNA to 98.6 9.6E-08 3.3E-12 100.3 8.4 162 102-286 54-232 (400)
36 4emv_A DNA topoisomerase IV, B 98.5 1.1E-07 3.9E-12 92.7 7.1 156 102-285 42-213 (226)
37 3cwv_A DNA gyrase, B subunit, 98.5 2.6E-07 9E-12 96.0 10.2 153 100-284 30-193 (369)
38 3lnu_A Topoisomerase IV subuni 98.3 9.9E-07 3.4E-11 92.8 7.4 159 100-285 50-223 (408)
39 3ttz_A DNA gyrase subunit B; p 98.1 5.4E-06 1.9E-10 79.1 7.6 141 101-285 32-180 (198)
40 1pvg_A DNA topoisomerase II; G 97.9 1.3E-05 4.6E-10 84.5 6.6 129 102-255 66-208 (418)
41 1th8_A Anti-sigma F factor; SP 97.6 4.9E-05 1.7E-09 66.5 4.3 85 102-215 41-125 (145)
42 4ew8_A Sensor protein DIVL; si 97.5 4.1E-05 1.4E-09 72.8 3.3 50 102-167 157-206 (268)
43 3d36_A Sporulation kinase B; G 97.4 4.7E-05 1.6E-09 70.9 2.6 74 102-206 125-198 (244)
44 3jz3_A Sensor protein QSEC; he 97.4 2.8E-05 9.4E-10 71.4 0.6 71 103-206 120-190 (222)
45 3ehh_A Sensor kinase (YOCF pro 97.2 0.00029 9.8E-09 65.0 5.5 45 104-165 134-178 (218)
46 3sl2_A Sensor histidine kinase 97.2 3.7E-05 1.3E-09 69.2 -0.7 79 102-206 45-125 (177)
47 2btz_A Pyruvate dehydrogenase 97.2 0.00046 1.6E-08 70.9 7.1 117 102-255 233-349 (394)
48 1ysr_A Sensor-type histidine k 97.1 0.00027 9.1E-09 61.6 3.9 75 102-206 48-122 (150)
49 2e0a_A Pyruvate dehydrogenase 97.1 0.00043 1.5E-08 71.2 5.7 118 102-255 232-349 (394)
50 2q8g_A [pyruvate dehydrogenase 97.1 0.00054 1.8E-08 70.8 6.1 118 102-255 245-362 (407)
51 1i58_A Chemotaxis protein CHEA 97.1 0.00042 1.4E-08 62.9 4.5 57 104-167 51-110 (189)
52 1r62_A Nitrogen regulation pro 97.0 0.00031 1.1E-08 61.1 3.2 53 102-169 50-112 (160)
53 1id0_A PHOQ histidine kinase; 97.0 0.00023 7.7E-09 61.9 2.2 48 102-167 46-93 (152)
54 1y8o_A [pyruvate dehydrogenase 97.0 0.00042 1.4E-08 72.1 4.4 119 102-255 255-373 (419)
55 3a0y_A Sensor protein; ATP-LID 96.9 0.00021 7.4E-09 61.8 1.4 50 102-167 49-98 (152)
56 1gkz_A [3-methyl-2-oxobutanoat 96.7 0.00061 2.1E-08 69.7 3.0 60 102-169 240-299 (388)
57 2c2a_A Sensor histidine kinase 96.7 0.00033 1.1E-08 66.6 0.8 55 102-169 140-194 (258)
58 4gfh_A DNA topoisomerase 2; to 96.5 0.012 4.1E-07 69.3 12.5 146 103-273 62-223 (1177)
59 1bxd_A ENVZ(290-450), protein 96.5 0.00099 3.4E-08 58.7 2.3 76 102-207 49-124 (161)
60 1b3q_A Protein (chemotaxis pro 96.3 0.0062 2.1E-07 62.6 7.5 55 105-167 111-169 (379)
61 3ehg_A Sensor kinase (YOCF pro 96.1 0.0067 2.3E-07 51.8 5.6 46 103-165 43-88 (128)
62 3zxq_A Hypoxia sensor histidin 95.7 0.004 1.4E-07 52.3 2.2 44 103-164 42-85 (124)
63 3zxo_A Redox sensor histidine 95.4 0.0036 1.2E-07 52.9 0.8 45 102-164 45-89 (129)
64 3a0r_A Sensor protein; four he 95.3 0.0086 3E-07 58.5 3.5 49 103-167 247-295 (349)
65 4fpp_A Phosphotransferase; fou 89.6 0.3 1E-05 46.5 4.7 47 104-166 150-198 (247)
66 3ke6_A Protein RV1364C/MT1410; 86.0 0.83 2.9E-05 47.0 5.7 73 102-214 299-372 (399)
67 1ixm_A SPO0B, protein (sporula 75.1 1.1 3.6E-05 42.2 1.7 56 104-169 109-166 (192)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-107 Score=899.09 Aligned_cols=412 Identities=54% Similarity=0.920 Sum_probs=338.0
Q ss_pred ccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEEC
Q 010583 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (507)
Q Consensus 77 ~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (507)
.|+|.||+|+++||+||+++||||+++|||||||||+||++++||.++++++++ ...+.+.|+|.+++++++|+|.||
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~--~~~~~~~I~I~~d~~~~~I~I~Dn 80 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQL--ETEPDLFIRITPKPEQKVLEIRDS 80 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTT--TTCCCCCEEEEEEGGGTEEEEEEC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhc--cCCCCcEEEEEEeCCCCEEEEEEC
Confidence 489999999999999999999999999999999999999999999999999987 556678899999988899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEE
Q 010583 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (507)
Q Consensus 157 GiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~ 236 (507)
|+|||++||.++|++||+||++.|+++++.+.+...||||||||||+||||++|+|+|+++++.++.|++.+++.|+|.+
T Consensus 81 GiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~ 160 (677)
T 2cg9_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTL 160 (677)
T ss_dssp SCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEE
T ss_pred CCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEee
Confidence 99999999999999999999999998887555778999999999999999999999999998789999999999999998
Q ss_pred CCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchH-HHHhhhhhhhcc
Q 010583 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDE-EEKAEKEEETEK 315 (507)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 315 (507)
++.+...++||+|+|+|++++.+|++.++|+++|++||+||+|||+++.+++.+.++++++++++++ .+..++++++++
T Consensus 161 ~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~~~~~~ 240 (677)
T 2cg9_A 161 DEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDK 240 (677)
T ss_dssp CCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC------------------------
T ss_pred cCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhcccccccccccccccc
Confidence 6433466899999999999999999999999999999999999999987665544433222110000 000000001111
Q ss_pred ccCCCcccccccccCCCcccccccccceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeecccccee
Q 010583 316 SESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEF 395 (507)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f 395 (507)
+.++ +++++++++++++|++++++++|+.||+++|||+|+|++||++||.+|||+++++| ++||+|+||++||+++|
T Consensus 241 ~~~~-~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~--~~pl~~~H~~veg~~~~ 317 (677)
T 2cg9_A 241 KPKL-EEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEF 317 (677)
T ss_dssp ----------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCC--SCCSEEEEEEECSSSCE
T ss_pred cccc-ccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCC--CCchheEEecccccceE
Confidence 2222 12111111345667788888999999999999999999999999999999999999 99999999999999999
Q ss_pred EEEEEeCCCCCcchhhhhccccccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHH
Q 010583 396 KAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKK 475 (507)
Q Consensus 396 ~~llyip~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~ 475 (507)
+||||||+++|+|+|++ .+.+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.
T Consensus 318 ~~lLyiP~~ap~d~~~~--~~~~~~ikLYv~rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~ 395 (677)
T 2cg9_A 318 RAILFIPKRAPFDLFES--KKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKN 395 (677)
T ss_dssp EEEEEECSSCCC-----------CCSEEEETTEEEEECSTTTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHH
T ss_pred EEEEEEcCCCchhhhhh--hhccCCeEEEEeeeEeecChhhhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHH
Confidence 99999999999999974 2557899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccc
Q 010583 476 LIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 476 l~~k~l~~l~~la~~~~~~~~ 496 (507)
|++||+++|.+||++ ++.|.
T Consensus 396 l~kkvl~~l~~la~~-~e~y~ 415 (677)
T 2cg9_A 396 IVKKLIEAFNEIAED-SEQFE 415 (677)
T ss_dssp HHHHHHHHHHHHHSC-SHHHH
T ss_pred HHHHHHHHHHHHHhC-HHHHH
Confidence 999999999999985 44443
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=1.1e-91 Score=772.38 Aligned_cols=364 Identities=60% Similarity=1.004 Sum_probs=291.5
Q ss_pred cccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEE
Q 010583 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (507)
Q Consensus 76 ~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (507)
..|++.||+|+++||++|+++||+++++|||||||||+||++++||.++++++++ +..+.+.|+|.+++++++|+|.|
T Consensus 21 ~~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~--~~a~~~~I~I~~d~~~~~I~I~D 98 (666)
T 2o1u_A 21 MSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLHVTD 98 (666)
T ss_dssp -------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSS--SSCCCCCEEEEEETTTTEEEEEE
T ss_pred cccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhc--cCCCccEEEEEEeCCCCEEEEEE
Confidence 3488999999999999999999999999999999999999999999999999877 45566889999998889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchhHHHhhhcc-----CCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCC
Q 010583 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADG 230 (507)
Q Consensus 156 NGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~-----~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~ 230 (507)
||+|||++||.++|++||+||++.|+++++.+ .+...||||||||||+||||++|+|+|+++++.++.|++++ |
T Consensus 99 nGiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~g-g 177 (666)
T 2o1u_A 99 TGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-N 177 (666)
T ss_dssp CSCCCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESS-S
T ss_pred CCCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeC-C
Confidence 99999999999999999999999999888753 46789999999999999999999999999877899999999 8
Q ss_pred ceEEEECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhhhh
Q 010583 231 AFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKE 310 (507)
Q Consensus 231 ~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~ 310 (507)
.|+|.+.+.+...++||+|+|+|++++.+|++.++|+++|++||+||++||+++++++.
T Consensus 178 ~~ti~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~~~--------------------- 236 (666)
T 2o1u_A 178 EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTG--------------------- 236 (666)
T ss_dssp CCEEEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC-----------------------
T ss_pred eEEEEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEeccccc---------------------
Confidence 99999864334568999999999999999999999999999999999999999764311
Q ss_pred hhhccccCCCcccccccccCCCcccccccccceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeecc
Q 010583 311 EETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAE 390 (507)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~e 390 (507)
+ + ++++++|+.+|+.+|+|+|++.++++++|.+||++++++| .+||.|+|+++|
T Consensus 237 ----------~--------~------~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~--~~pl~~ih~~~e 290 (666)
T 2o1u_A 237 ----------G--------G------GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKES--DDPMAYIHFTAE 290 (666)
T ss_dssp -----------------------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTT--SCCSEEEEEEEC
T ss_pred ----------c--------c------cccccceEEEecCccccccCcccccHHHHHHHHhhhcccc--ccCeeEEEeccc
Confidence 0 0 0113579999999999999999999999999999999999 899999999999
Q ss_pred ccceeEEEEEeCCCCCcchhhhhccccccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHH
Q 010583 391 GDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLK 470 (507)
Q Consensus 391 g~~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~ 470 (507)
|+++|+|+||+|+.+|+|+|.+.+...+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|+
T Consensus 291 g~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~LYVn~vfI~d~~~~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~ 370 (666)
T 2o1u_A 291 GEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLK 370 (666)
T ss_dssp SSSCEEEEEEECSSCCC------------CEEEEETTEEEESCCCTTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHH
T ss_pred CcEEEEEEEEcCCCCchhhhhhccccccCCeEEEEcCeEeeCchhhhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHH
Confidence 99999999999999999998753223578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 010583 471 TIKKKLIRKALDMIRKIAE 489 (507)
Q Consensus 471 ~irk~l~~k~l~~l~~la~ 489 (507)
+||+.|++||+++|.+||+
T Consensus 371 ~I~~~l~kkv~~~l~~l~~ 389 (666)
T 2o1u_A 371 VIRKKLVRKTLDMIKKIAD 389 (666)
T ss_dssp HHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998
No 3
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=2.1e-90 Score=751.32 Aligned_cols=364 Identities=43% Similarity=0.836 Sum_probs=331.0
Q ss_pred ccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEEC
Q 010583 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (507)
Q Consensus 77 ~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (507)
.|++.||+++++||++|+++||++|++|||||||||+||++++||.++++|+++ +....+.|+|.+++++++|+|.||
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~I~~d~~~~~I~I~Dn 81 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISDN 81 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--CSCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhc--cCCCccEEEEEEeCCCcEEEEEEC
Confidence 489999999999999999999999999999999999999999999999999887 555667899999988899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHhhhcc--CCCccccccccceeeeeeecCEEEEEEeeCC---CeeEEEEecCCCc
Q 010583 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGA 231 (507)
Q Consensus 157 GiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~--~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~---d~~~~W~s~~~~~ 231 (507)
|+|||++||.++|++||+||+++|+++++.. .+...|||||+||||+||||++|+|+|++++ +.++.|++.+++.
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (559)
T 1y4s_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (559)
T ss_dssp SSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSE
T ss_pred CCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCe
Confidence 9999999999999999999999997766532 3678999999999999999999999999986 5689999999999
Q ss_pred eEEEECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhhhhh
Q 010583 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (507)
Q Consensus 232 f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 311 (507)
|++.+.+ ...+||+|+|+|++++.+|++.++|+++|++||+||++||+++.+ + .+
T Consensus 162 ~~i~~~~---~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~----e--~~---------------- 216 (559)
T 1y4s_A 162 YTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR----E--EK---------------- 216 (559)
T ss_dssp EEEEEEC---CCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEE----E--CS----------------
T ss_pred eEEeECC---CCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec----c--cc----------------
Confidence 9998752 458999999999999999999999999999999999999999641 0 00
Q ss_pred hhccccCCCcccccccccCCCcccccccccceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccc
Q 010583 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (507)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg 391 (507)
+ + + + +++|+.+|+.+|+|++++.++++++|.+||++++++| .+||+|+|++++|
T Consensus 217 ---------~--------~---~---~-~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~--~~~l~~ih~~~eg 270 (559)
T 1y4s_A 217 ---------D--------G---E---T-VISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEG 270 (559)
T ss_dssp ---------T--------T---S---C-EEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCS--SCEEEEEEECCCS
T ss_pred ---------c--------c---c---c-ccceEEEeCCccceecCcccccHHHHHHHHHhhhhhh--hcCeEEEEeccCC
Confidence 0 0 0 0 3578999999999999999999999999999999999 9999999999999
Q ss_pred cceeEEEEEeCCCCCcchhhhhccccccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHH
Q 010583 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (507)
Q Consensus 392 ~~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~ 471 (507)
+++|+|+||+|..+|+++|.+ ..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++
T Consensus 271 ~~~~~gll~~P~~~p~~~~~r---~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~ 347 (559)
T 1y4s_A 271 KQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRN 347 (559)
T ss_dssp SSCEEEEEEEESSCCTTCSSS---SCCCCEEEEETTEEEEEEEGGGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHH
T ss_pred ceEEEEEEEcCCcCcchhhhh---cccCCeEEEEcCEEeecchhhhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHH
Confidence 999999999999999999865 56789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccc
Q 010583 472 IKKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 472 irk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
||+.|++||+++|.+||+++|+.|.
T Consensus 348 I~~~l~kkv~~~l~~l~~~d~e~y~ 372 (559)
T 1y4s_A 348 LRNALTKRVLQMLEKLAKDDAEKYQ 372 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999999887765
No 4
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=1.5e-89 Score=752.50 Aligned_cols=364 Identities=43% Similarity=0.835 Sum_probs=313.9
Q ss_pred ccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEEC
Q 010583 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (507)
Q Consensus 77 ~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (507)
.|++.||+++++||++|+++||+++++|||||||||+||++++||.++++|+++ .....+.|+|.+++++++|+|.||
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~--~~a~~~~I~I~~d~~~~~I~I~Dn 81 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISDN 81 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTT--TTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccc--cCCCCcEEEEEEeCCCcEEEEEEC
Confidence 488999999999999999999999999999999999999999999999999877 455667899999988899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHhhhcc--CCCccccccccceeeeeeecCEEEEEEeeCC---CeeEEEEecCCCc
Q 010583 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGA 231 (507)
Q Consensus 157 GiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~--~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~---d~~~~W~s~~~~~ 231 (507)
|+|||++||.++|++||+||+++|+++++.. .+...|||||+||||+||||++|+|+|++++ +.++.|++.+++.
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (624)
T 2ioq_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (624)
T ss_dssp SCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSC
T ss_pred CCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCe
Confidence 9999999999999999999999998877642 4678999999999999999999999999986 4689999999999
Q ss_pred eEEEECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhhhhh
Q 010583 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (507)
Q Consensus 232 f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 311 (507)
|++.+.+ ...+||+|+|+|++++.+|++.++|+++|++||+||++||+++.+ + . +
T Consensus 162 ~~i~~~~---~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~~~--e-~---~---------------- 216 (624)
T 2ioq_A 162 YTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR--E-E---K---------------- 216 (624)
T ss_dssp CEEEEEC---CSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEEEE--E-E---C----------------
T ss_pred EEEEECC---CCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec--c-c---c----------------
Confidence 9998752 457999999999999999999999999999999999999999641 0 0 0
Q ss_pred hhccccCCCcccccccccCCCcccccccccceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccc
Q 010583 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (507)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg 391 (507)
+ + + + +++|+.+|+.+|+|++++.++++++|.+||++++++| .+||+|+|++++|
T Consensus 217 ---------~--------~---~---~-~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~--~~~l~~ih~~~eg 270 (624)
T 2ioq_A 217 ---------D--------G---E---T-VISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEG 270 (624)
T ss_dssp ---------S--------S---C---E-EEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCC--SCCSCCEEEEEES
T ss_pred ---------c--------c---c---c-ccceEEEeCCccceEecCccchHHHHHHHHHhhccch--hcCeEEEEecccc
Confidence 0 0 0 0 3579999999999999999999999999999999999 9999999999999
Q ss_pred cceeEEEEEeCCCCCcchhhhhccccccCeEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHH
Q 010583 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (507)
Q Consensus 392 ~~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~ 471 (507)
+++|+|+||+|..+|+++|.+ ..+++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++
T Consensus 271 ~~~~~gll~~P~~~p~~~~~r---~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~ 347 (624)
T 2ioq_A 271 KQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRN 347 (624)
T ss_dssp SSCEEEEEECCSSCCGGGSSS---SCCCCEEEEESSCEEEEEECSSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHH
T ss_pred eEEEEEEEEeCCcCccchhhh---cccCCeEEEECCEEeecchhccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHH
Confidence 999999999999999999875 56789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccc
Q 010583 472 IKKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 472 irk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
||+.|++||+++|.+||+++|+.|.
T Consensus 348 I~~~l~kkv~~~l~~l~~~d~e~y~ 372 (624)
T 2ioq_A 348 LRNALTKRVLQMLEKLAKDDAEKYQ 372 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999999887765
No 5
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=2.6e-66 Score=519.81 Aligned_cols=265 Identities=53% Similarity=0.845 Sum_probs=228.7
Q ss_pred hhhhhccccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCcc
Q 010583 70 KRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK 149 (507)
Q Consensus 70 ~~~~~~~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~ 149 (507)
..+|+.+.+++.||+|+++||+||+++||+++++|||||||||+||++++||.++++|+++ +..+.+.|+|.++++++
T Consensus 16 ~~~~~~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~--~~~~~l~I~I~~d~~~~ 93 (281)
T 3peh_A 16 FQGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL--GEEKKLEIRISANKEKN 93 (281)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGG--TTCCCCCEEEEEETTTT
T ss_pred HHHHhhccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhc--cCCCceEEEEEEcCCCc
Confidence 3466677899999999999999999999999999999999999999999999999999987 66778899999999999
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhc-cCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecC
Q 010583 150 ILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT-SGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKA 228 (507)
Q Consensus 150 ~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~-~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~ 228 (507)
+|+|.|||+|||+++|.++|++||+||++.|+++++. +.+..+|||||||||||||||++|+|+|+++++.+|.|+|.+
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g 173 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTA 173 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEET
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECC
Confidence 9999999999999999999999999999999998875 457789999999999999999999999999888899999999
Q ss_pred CCceEEEECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhh
Q 010583 229 DGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAE 308 (507)
Q Consensus 229 ~~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~ 308 (507)
++.|+|.+++.+++..+||+|+|||++++.+|+++++|+++|++||+||+|||+|+.+++.++++++++++
T Consensus 174 ~g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~--------- 244 (281)
T 3peh_A 174 DAKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAK--------- 244 (281)
T ss_dssp TSCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHH---------
T ss_pred CccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhh---------
Confidence 99999999765567899999999999999999999999999999999999999999999888876642210
Q ss_pred hhhhhccccCCCcccccccccCCCcccccccccceeecc
Q 010583 309 KEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLN 347 (507)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN 347 (507)
++.++++++++ ++++++ ++++|+||+++++|+|+.+|
T Consensus 245 ~~~~~~~~~~~-e~~~~~-~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 245 DMVNDPNYDSV-KVEETD-DPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp HHTTCTTSSEE-EECCCC-CTTCCEEEEEEEEEEEEECC
T ss_pred hcccccccccc-cccccc-ccccCCcceEEEEEEeEecC
Confidence 01111233333 222222 34567889999999999998
No 6
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=3e-61 Score=482.00 Aligned_cols=262 Identities=58% Similarity=0.960 Sum_probs=205.1
Q ss_pred ccccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEE
Q 010583 75 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIR 154 (507)
Q Consensus 75 ~~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~ 154 (507)
...++|.||+++++||+||+++||+++++|||||||||+||++++||.++++|+++ ...+.+.|+|.++++.++|+|.
T Consensus 3 ~~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~i~~d~~~~~l~I~ 80 (269)
T 1qy5_A 3 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLHVT 80 (269)
T ss_dssp -CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTT--TTCCCCCEEEEEETTTTEEEEE
T ss_pred CcccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhc--cCCCceEEEEEEcCCceEEEEE
Confidence 45689999999999999999999999999999999999999999999999999887 5567789999999888999999
Q ss_pred ECCCCCCHHHHHHHHHHHHhcCchhHHHhhhcc-----CCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCC
Q 010583 155 DRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD 229 (507)
Q Consensus 155 DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~-----~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~ 229 (507)
|||+|||+++|.++|++||+||++.|+++++.. .+..+||||||||||+||||++|+|+|+++++.+|.|++++
T Consensus 81 DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~g- 159 (269)
T 1qy5_A 81 DTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS- 159 (269)
T ss_dssp ECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECS-
T ss_pred ECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeC-
Confidence 999999999999999999999999999888753 56789999999999999999999999999887899999999
Q ss_pred CceEEEECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCCCCCCCCchHHHHhhh
Q 010583 230 GAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEK 309 (507)
Q Consensus 230 ~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~~~~~~~~~~~~~~~~ 309 (507)
|.|+|...+.+....+||+|+|+|+++..+|++.++|+++|++||+||+|||+|+++++.+++++++++++++++
T Consensus 160 g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~----- 234 (269)
T 1qy5_A 160 NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEE----- 234 (269)
T ss_dssp SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC---------------------
T ss_pred CEEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhc-----
Confidence 899999864334568999999999999999999999999999999999999999999888777665443321110
Q ss_pred hhhhccccCCCcccccccccCCCcccccccccceeecc
Q 010583 310 EEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLN 347 (507)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~vN 347 (507)
+.++++..++ ++ +++++++|+|++++++|+|+.+|
T Consensus 235 ~~~~~~~~~~-~~--~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 235 KEDSDDEAAV-EE--EEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp ----------------------------CCCEEEEECC
T ss_pred cccccccccc-cc--ccccccccCCceEEEEeeeEecC
Confidence 0001112222 11 12233567888999999999998
No 7
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=8.1e-59 Score=456.70 Aligned_cols=212 Identities=58% Similarity=0.964 Sum_probs=197.9
Q ss_pred cccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEE
Q 010583 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (507)
Q Consensus 76 ~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (507)
..|++.||+|+++||+||+++||+++++|||||||||+||++++||.++++|..+ ...+.+.|+|.+|+++++|+|.|
T Consensus 15 ~~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~I~~d~~~~~L~I~D 92 (239)
T 3nmq_A 15 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKL--DSGKELKIDIIPNPQERTLTLVD 92 (239)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--TTCCCCCEEEEEETTTTEEEEEE
T ss_pred cceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhc--cCCCceEEEEEEeCCccEEEEEe
Confidence 3689999999999999999999999999999999999999999999999999877 56678899999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEE
Q 010583 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAIS 235 (507)
Q Consensus 156 NGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~ 235 (507)
||+|||++||.++|++||+||++.|+++++.+.+..+||||||||||+||||++|+|+|+++++.+|.|+|++++.|+|.
T Consensus 93 nGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~fti~ 172 (239)
T 3nmq_A 93 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVR 172 (239)
T ss_dssp CSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEEEEE
T ss_pred CCCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcEEEE
Confidence 99999999999999999999999999988755678899999999999999999999999998888999999999999999
Q ss_pred ECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceee
Q 010583 236 EDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVD 290 (507)
Q Consensus 236 ~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~ 290 (507)
+++ +++..+||+|+|||++++.+|+++++|+++|++||+||+|||+++.+++.+
T Consensus 173 ~~~-~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~~~~~ 226 (239)
T 3nmq_A 173 ADH-GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKERE 226 (239)
T ss_dssp ECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCCSCC-
T ss_pred ecC-CCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeeeeecc
Confidence 864 456789999999999999999999999999999999999999999876543
No 8
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=2e-59 Score=463.34 Aligned_cols=209 Identities=57% Similarity=0.945 Sum_probs=190.2
Q ss_pred ccccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccC-----------------------
Q 010583 75 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLG----------------------- 131 (507)
Q Consensus 75 ~~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g----------------------- 131 (507)
+..|++.||||+++||+||+|+||||+++|||||||||+|||+|+| +++++|.++|
T Consensus 22 ~~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (272)
T 3ied_A 22 SPVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVN 100 (272)
T ss_dssp EECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC-------------------
T ss_pred cccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhccccccccccccccccccccccc
Confidence 3568999999999999999999999999999999999999999999 8888776441
Q ss_pred ----------C--CCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhcc-CCCcccccccc
Q 010583 132 ----------E--GDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-GDLNLIGQFGV 198 (507)
Q Consensus 132 ----------~--~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~-~~~~~IGqFGI 198 (507)
+ +..+++.|+|.+|+++++|+|.|||+|||+++|.++|++||+||++.|+++++.+ .+..+||||||
T Consensus 101 ~~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGV 180 (272)
T 3ied_A 101 ESTDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGV 180 (272)
T ss_dssp -------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCC
T ss_pred cccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccc
Confidence 0 1235689999999999999999999999999999999999999999999988754 57889999999
Q ss_pred ceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEECC-----CCCCCCCCcEEEEEecCcccccccHHHHHHHHHHH
Q 010583 199 GFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDT-----WNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKY 273 (507)
Q Consensus 199 Gf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~~-----~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkky 273 (507)
||||+||||++|+|+|+ +++.+|.|+|+++|+|+|.+++ .++..++||+|+||||+++.+|+++++|+++|++|
T Consensus 181 GFySaFmVAdkV~V~Sk-~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likky 259 (272)
T 3ied_A 181 GFYSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKY 259 (272)
T ss_dssp GGGGGGGTEEEEEEEEE-SSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHH
T ss_pred eeheeeccCCEEEEEEc-CCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHH
Confidence 99999999999999999 6778999999999999999875 34567999999999999999999999999999999
Q ss_pred hCcCCcceeecc
Q 010583 274 SEFINFPIYIWA 285 (507)
Q Consensus 274 s~fl~~PI~l~~ 285 (507)
|+||+|||+||.
T Consensus 260 s~fi~~PI~l~~ 271 (272)
T 3ied_A 260 SEFIKFPIEIWS 271 (272)
T ss_dssp CTTCCSCEEECC
T ss_pred HhCCCCCeEEEe
Confidence 999999999985
No 9
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=9e-55 Score=431.76 Aligned_cols=236 Identities=55% Similarity=0.902 Sum_probs=194.5
Q ss_pred cccCCCCCCCCCchhhhhhhhhhhhhhhhhccccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhc
Q 010583 45 EKLGAVPNGLSTDSDVAKREAESISKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSL 124 (507)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l 124 (507)
.+++..++...++++++++ ++.|++.||+|+++||++|+++||+++++|||||||||+||++++||.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~-----------~~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l 84 (256)
T 3o0i_A 16 PRGSHMPEETQTQDQPMEE-----------EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 84 (256)
T ss_dssp -------------------------------CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCcccccccccccc-----------ccceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhc
Confidence 3455555555555554432 34689999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeee
Q 010583 125 TDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVY 204 (507)
Q Consensus 125 ~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~F 204 (507)
++|..+ ...+.+.|+|.++++.++|+|.|||+|||++||.++|++||+||++.|.+.++.+.+...||+||+||||+|
T Consensus 85 ~~~~~~--~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f 162 (256)
T 3o0i_A 85 TDPSKL--DSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAY 162 (256)
T ss_dssp HCGGGG--TTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGG
T ss_pred cCchhc--cCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhh
Confidence 999877 666788999999988899999999999999999999999999999999887764456789999999999999
Q ss_pred eecCEEEEEEeeCCCeeEEEEecCCCceEEEECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeec
Q 010583 205 LVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIW 284 (507)
Q Consensus 205 mVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~ 284 (507)
+||++|+|+||++++.++.|++.+++.|++.+++ +.+.++||+|+|+||.+..+|++.++|+++|++||+||++||+++
T Consensus 163 ~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~v~~~~-~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~ 241 (256)
T 3o0i_A 163 LVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 241 (256)
T ss_dssp GTEEEEEEEEECTTSCEEEEEECSTTEEEEEECC-SSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEEC
T ss_pred ccCCeEEEEEcCCCCceEEEEEeccceEEEeeCC-CCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEe
Confidence 9999999999998888999999999999999864 346689999999999999999999999999999999999999999
Q ss_pred ccceeeccCC
Q 010583 285 ASKEVDVDVP 294 (507)
Q Consensus 285 ~~k~~~~~~~ 294 (507)
.+++++++++
T Consensus 242 ~~~~~~~~~~ 251 (256)
T 3o0i_A 242 VEKERDKEVS 251 (256)
T ss_dssp CC--------
T ss_pred eeeeecccCC
Confidence 9886665554
No 10
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=5.6e-53 Score=413.15 Aligned_cols=216 Identities=59% Similarity=0.969 Sum_probs=192.7
Q ss_pred cccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEE
Q 010583 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (507)
Q Consensus 76 ~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (507)
+.|+++||+|+++||++|+++||+++.+|||||||||+||++++||.+++++..+ ...+.+.|+|.++.+..+|+|.|
T Consensus 8 ~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~--~~~~~i~I~I~~d~~~~~i~V~D 85 (228)
T 3t0h_A 8 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKL--DSGKELHINLIPNKQDRTLTIVD 85 (228)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGG--TTCCCCCEEEEEETTTTEEEEEE
T ss_pred cccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccc--cCCCceEEEEEEeCCeeEEEEEe
Confidence 4689999999999999999999999999999999999999999999999999877 55667899999888889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEE
Q 010583 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAIS 235 (507)
Q Consensus 156 NGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~ 235 (507)
||+|||+++|..+|++||+|+++.|.+.++.+.+...||+||+||+|+|+||++|+|+|++.++.++.|++.+++.|++.
T Consensus 86 nG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~v~ 165 (228)
T 3t0h_A 86 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVR 165 (228)
T ss_dssp CSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEE
T ss_pred CCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEEEe
Confidence 99999999999999999999999998777544467899999999999999999999999998778999999999999999
Q ss_pred ECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeeccCC
Q 010583 236 EDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVP 294 (507)
Q Consensus 236 ~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~~~~ 294 (507)
+.+ +...++||+|+|+||++..+|++.++|+++|++||+||++||+++.+++++++++
T Consensus 166 ~~~-~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~ 223 (228)
T 3t0h_A 166 TDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVS 223 (228)
T ss_dssp ECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC--------
T ss_pred ecC-CCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCC
Confidence 864 3456899999999999999999999999999999999999999998876655444
No 11
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=1.1e-52 Score=412.67 Aligned_cols=212 Identities=62% Similarity=1.004 Sum_probs=179.3
Q ss_pred hhccccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEE
Q 010583 73 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILS 152 (507)
Q Consensus 73 ~~~~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~ 152 (507)
|.++.|++.||+++++|+++|+++||++|.+|||||||||+||++++||.++++++++ ...+.+.|+|.+++++++|+
T Consensus 5 ~~~~~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~--~~~~~~~I~i~~d~~~~~i~ 82 (236)
T 2gqp_A 5 LREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLH 82 (236)
T ss_dssp HHHTTTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTT--TTCCCCCEEEEEETTTTEEE
T ss_pred ccccccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccc--cCCCceEEEEEEcCCCCEEE
Confidence 4456789999999999999999999999999999999999999999999999999877 45566889998888888999
Q ss_pred EEECCCCCCHHHHHHHHHHHHhcCchhHHHhhhcc-----CCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEec
Q 010583 153 IRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESK 227 (507)
Q Consensus 153 I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~-----~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~ 227 (507)
|.|||+||+++||.++|++||+||++.|+++++.. .+...||||||||||+||+|++|+|.|++.++.++.|+++
T Consensus 83 I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~ 162 (236)
T 2gqp_A 83 VTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESD 162 (236)
T ss_dssp EEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEES
T ss_pred EEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEe
Confidence 99999999999999999999999999998777643 4667999999999999999999999999987789999999
Q ss_pred CCCceEEEECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccc
Q 010583 228 ADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASK 287 (507)
Q Consensus 228 ~~~~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k 287 (507)
+ |.|++.+.+.+....+||+|+|+|+++..+|++.++|+++|++||+|++|||++++++
T Consensus 163 g-g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 163 S-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp S-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred C-CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 8 8999988643334689999999999999999999999999999999999999998743
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=2.2e-51 Score=408.67 Aligned_cols=148 Identities=39% Similarity=0.818 Sum_probs=124.5
Q ss_pred ccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccceeEEEEEeCCCCCcchhhhhccccccCeEEeee
Q 010583 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (507)
Q Consensus 347 N~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvr 426 (507)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|.+++...+++|+||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvr 78 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAY--DDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVK 78 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCC--SCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEET
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCc--cCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEe
Confidence 788999999999999999999999999999 999999999999999999999999999999988665566799999999
Q ss_pred eeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 010583 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 427 rVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+++|+.+.
T Consensus 79 rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~~d~e~y~ 148 (263)
T 1y6z_A 79 RVFINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKETGGDKWT 148 (263)
T ss_dssp TEEEESCGGGGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHHHCSHHHH
T ss_pred eeEeecchhhhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988765
No 13
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=5e-51 Score=404.72 Aligned_cols=145 Identities=50% Similarity=0.961 Sum_probs=129.1
Q ss_pred ccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccceeEEEEEeCCCCCcchhhhhccccccCeEEeee
Q 010583 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (507)
Q Consensus 347 N~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvr 426 (507)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|++ ...+++|+||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvr 76 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVR 76 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC------CCEEEEET
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCc--cCCeeEEEeeccCcceeEEEEEecCCCchhhhhh--hhccCCeEEEEe
Confidence 789999999999999999999999999999 9999999999999999999999999999999975 245789999999
Q ss_pred eeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 010583 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 427 rVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||+ +++.+.
T Consensus 77 rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~-d~e~y~ 145 (260)
T 1usu_A 77 RVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAE-DSEQFE 145 (260)
T ss_dssp TEEEESCCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHT-CHHHHH
T ss_pred eeEeccchhhhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHh-CHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 455443
No 14
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=9.9e-51 Score=403.87 Aligned_cols=145 Identities=53% Similarity=0.979 Sum_probs=132.0
Q ss_pred ccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccceeEEEEEeCCCCCcchhhhhccccccCeEEeee
Q 010583 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (507)
Q Consensus 347 N~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvr 426 (507)
|.++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|++ ...+++|+||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYv~ 76 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDW--EDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFEN--KKKKNNIKLYVR 76 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCC----------CCCEEEEET
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCc--cCchheeeecccCCeeEEEEEEccCCCchhhhhh--hhhcCCeeEEEE
Confidence 467899999999999999999999999999 9999999999999999999999999999999975 245789999999
Q ss_pred eeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 010583 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 427 rVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+|| ++++.+.
T Consensus 77 rVfI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la-~d~e~Y~ 145 (268)
T 3pry_A 77 RVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA-EDKENYK 145 (268)
T ss_dssp TEEEESCCGGGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-TSHHHHH
T ss_pred EEEeecchhhhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH-hCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 7776654
No 15
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=2.9e-50 Score=403.76 Aligned_cols=143 Identities=51% Similarity=0.975 Sum_probs=128.2
Q ss_pred CCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccceeEEEEEeCCCCCcchhhhhccccccCeEEeeeee
Q 010583 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (507)
Q Consensus 349 ~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (507)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+|+|++ ...+++|+||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~--~~~~~~ikLYvrrV 76 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVRRV 76 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCC--SCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSS--CCCCCCCEEEETTE
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCc--ccCeeEEEEeccCCceeEEEEEecCCCcchhhhh--hhccCCeEEEEeee
Confidence 4799999999999999999999999999 9999999999999999999999999999999975 24478999999999
Q ss_pred eeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 010583 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 429 fI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||+ +++.|.
T Consensus 77 fI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~-d~e~Y~ 143 (288)
T 1hk7_A 77 FITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAE-DSEQFE 143 (288)
T ss_dssp EEESSCSSSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred EeecchhhhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996 455443
No 16
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=5.6e-49 Score=381.54 Aligned_cols=211 Identities=59% Similarity=0.959 Sum_probs=192.2
Q ss_pred ccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEEC
Q 010583 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (507)
Q Consensus 77 ~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (507)
.|++.||+++++|+++|+++||+++.+|||||||||+||++++|+.+++++..+ ...+.+.|+|..+.+..+|+|.||
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~--~~~~~i~I~i~~~~~~~~i~I~Dn 80 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQL--ETEPDLFIRITPKPEQKVLEIRDS 80 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGG--GGCCCCCEEEEEEGGGTEEEEEEC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhc--cCCCcEEEEEEECCCCCEEEEEEc
Confidence 589999999999999999999999999999999999999999999999998876 445667888888877789999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEE
Q 010583 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (507)
Q Consensus 157 GiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~ 236 (507)
|+||++++|.++|++||+||++.|+++++...+...||+||+||||+|++|++|+|.|++.++.++.|++++++.|.+.+
T Consensus 81 G~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~ 160 (220)
T 2wer_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTL 160 (220)
T ss_dssp SCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEE
T ss_pred CCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeec
Confidence 99999999999999999999999988887556778999999999999999999999999987779999999999999988
Q ss_pred CCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeeccccee
Q 010583 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEV 289 (507)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~ 289 (507)
.+.+....+||+|+|+|++++.+|++.++|+++|++|++|+++||+++.++++
T Consensus 161 ~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~~ 213 (220)
T 2wer_A 161 DEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEV 213 (220)
T ss_dssp CSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCCCCC
T ss_pred ccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 64223568999999999999999999999999999999999999999987644
No 17
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=3.8e-50 Score=424.36 Aligned_cols=151 Identities=47% Similarity=0.890 Sum_probs=127.8
Q ss_pred cceeecccCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccceeEEEEEeCCCCCcchhhhhccccccC
Q 010583 341 FEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKAN 420 (507)
Q Consensus 341 ~~~e~vN~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f~~llyip~~~p~~~~~~~~~~~~~~ 420 (507)
.+|++||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|++ ...+++
T Consensus 11 ~~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~--~~~~~~ 86 (444)
T 3hjc_A 11 RENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDW--EDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEP--NKKRNN 86 (444)
T ss_dssp --------CCCGGGSCGGGCCHHHHHHHHHHTSSCC--SCCSEEEEEEECSSSCEEEEEEECSSCCC----C--CCCCCS
T ss_pred CCceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCc--cCCceeEEEEecccceeeEEEecCCCCCcchhhh--hhhcCC
Confidence 369999999999999999999999999999999999 9999999999999999999999999999999873 256789
Q ss_pred eEEeeeeeeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 010583 421 LKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 421 ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||+ +++.|.
T Consensus 87 ikLYv~rVfI~D~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la~-d~e~Y~ 161 (444)
T 3hjc_A 87 IKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAE-NKEDYK 161 (444)
T ss_dssp EEEEETTEEEESCCGGGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred eeEEEeeeEeecchhhhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHh-CHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 565554
No 18
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=9.7e-49 Score=390.66 Aligned_cols=213 Identities=59% Similarity=0.971 Sum_probs=191.4
Q ss_pred cccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEE
Q 010583 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (507)
Q Consensus 76 ~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (507)
+.+++.||+++++|+++|+++||++|.+|||||||||+||++++|+.++++++++ .....+.|+|..+.+..+|+|.|
T Consensus 44 ~~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~--~~~~~i~I~i~~d~~~~~I~I~D 121 (264)
T 1yc1_A 44 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKL--DSGKELHINLIPNKQDRTLTIVD 121 (264)
T ss_dssp CEEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--GGCCCCCEEEEEETTTTEEEEEE
T ss_pred cceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCcccc--CCCCeEEEEEEECCCeeEEEEEE
Confidence 4589999999999999999999999999999999999999999999999998876 44566788888887788999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEE
Q 010583 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAIS 235 (507)
Q Consensus 156 NGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~ 235 (507)
||+||++++|.++|++||+||++.|+++++...+...||+|||||||+|++|++|+|.|++.++.++.|++.+++.|++.
T Consensus 122 nG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~ 201 (264)
T 1yc1_A 122 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVR 201 (264)
T ss_dssp CSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEE
T ss_pred CCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEe
Confidence 99999999999999999999999998887655567899999999999999999999999998777999999998999998
Q ss_pred ECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecccceeec
Q 010583 236 EDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDV 291 (507)
Q Consensus 236 ~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~~k~~~~ 291 (507)
+.+ .....+||+|+|+|+++..+|++.++|+++|++||+||+|||+++++++.++
T Consensus 202 ~~~-~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~~~ 256 (264)
T 1yc1_A 202 TDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDK 256 (264)
T ss_dssp ECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECCCC----
T ss_pred ecC-CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEeecccccc
Confidence 864 2346899999999999999999999999999999999999999998765433
No 19
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=1.7e-49 Score=400.69 Aligned_cols=143 Identities=43% Similarity=0.905 Sum_probs=137.8
Q ss_pred CCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccceeEEEEEeCCCCCcchhhhhccccccCeEEeeeee
Q 010583 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (507)
Q Consensus 349 ~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (507)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|++ ..+++|+||||||
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~---~~~~~ikLYvrrV 76 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRV 76 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCC--SCCSEEEEEEECSSSCEEEEEEECSSCCTTTTST---TCCCSEEEEETTE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCc--cCcceeEEeccccccceeEEEEecCCCCchhhhh---hccCCeEEEEece
Confidence 5799999999999999999999999999 9999999999999999999999999999999875 4578999999999
Q ss_pred eeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 010583 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 429 fI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||+++|+.|.
T Consensus 77 fI~D~~eeLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~~d~e~Y~ 144 (303)
T 2gq0_A 77 FIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQ 144 (303)
T ss_dssp EEEEEEGGGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred EeecchhhhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888665
No 20
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=9.4e-48 Score=405.19 Aligned_cols=144 Identities=54% Similarity=0.987 Sum_probs=120.9
Q ss_pred cCCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccceeEEEEEeCCCCCcchhhhhccccccCeEEeeee
Q 010583 348 DVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRR 427 (507)
Q Consensus 348 ~~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvrr 427 (507)
.++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|++ ...+++|+|||||
T Consensus 2 ~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvrr 77 (448)
T 3q6m_A 2 ATKPIWTRNPDDITNEEYGEFYKSLTNDW--EDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFEN--RKKKNNIKLYVRR 77 (448)
T ss_dssp --CCGGGSCTTSCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCC-----------CCEEEEETT
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHhcCCc--cCChheeeeccCCCeeeEEEEEccCCCchhhhhh--hhhccceeEEeee
Confidence 36899999999999999999999999999 9999999999999999999999999999999964 2457899999999
Q ss_pred eeeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 010583 428 VFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 428 VfI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
|||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+|| ++++.|.
T Consensus 78 VfI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la-~d~e~Y~ 145 (448)
T 3q6m_A 78 VFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA-EDKENYK 145 (448)
T ss_dssp EEEESCCTTSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHT-SSHHHHH
T ss_pred eEEecchhhhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH-hCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 7776654
No 21
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-48 Score=405.20 Aligned_cols=143 Identities=50% Similarity=0.970 Sum_probs=135.5
Q ss_pred CCCCccCCCCCCCHHHHHHHHHHhhCCCCCCCCceeeeeeccccceeEEEEEeCCCCCcchhhhhccccccCeEEeeeee
Q 010583 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (507)
Q Consensus 349 ~~~iW~r~~~~v~~eey~~fyk~l~~~~~~~~pl~~~h~~~eg~~~f~~llyip~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (507)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|++ ...+++|+||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvrrV 76 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVRRV 76 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSS--CCCCCCCEEEETTE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCC--cCCeeEEEeccCCCcceeEEEEecCCCchhhhhh--hhccCCeEEEEeee
Confidence 4799999999999999999999999999 9999999999999999999999999999999975 24578999999999
Q ss_pred eeccchhhhhhhhhcccceeecCCCCCCccchhhhhcchHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 010583 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEST 496 (507)
Q Consensus 429 fI~d~~~~llP~yl~Fv~GVVDS~dLplNvSRE~lQ~~~~l~~irk~l~~k~l~~l~~la~~~~~~~~ 496 (507)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+||++ ++.|.
T Consensus 77 fI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~~-~e~y~ 143 (405)
T 2cge_A 77 FITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED-SEQFE 143 (405)
T ss_dssp EEESSCSSSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred EecCchhhhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhhC-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999984 55543
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=2.1e-43 Score=346.20 Aligned_cols=205 Identities=45% Similarity=0.816 Sum_probs=183.0
Q ss_pred cccceeeeechhchhhHHhhcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEE
Q 010583 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (507)
Q Consensus 76 ~~e~~~Fqae~~rLl~lL~~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (507)
+.|++.||+++++|+++|+++||++|.+|||||||||+||++++|+.++.++.+. .....+.|+|.++.++..|+|.|
T Consensus 23 ~~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~--~~~~~~~I~i~~~~~~~~i~I~D 100 (235)
T 2ior_A 23 GQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISD 100 (235)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGG--TTCCCCCEEEEEETTTTEEEEEE
T ss_pred ccccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCcccc--CCCceEEEEEEEcCCceEEEEEE
Confidence 4588999999999999999999999999999999999999999999999988876 44455788888888888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchhHHHhhhc--cCCCccccccccceeeeeeecCEEEEEEeeCC---CeeEEEEecCCC
Q 010583 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT--SGDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADG 230 (507)
Q Consensus 156 NGiGMT~edL~~~LgtIa~Sgk~~f~~~l~~--~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~---d~~~~W~s~~~~ 230 (507)
||+||+++||..+|++||+|+++.|.++++. ..+...+|+||+||||+|++|++|+|.|++.+ ..++.|.+++++
T Consensus 101 nG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~ 180 (235)
T 2ior_A 101 NGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG 180 (235)
T ss_dssp CSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSS
T ss_pred CCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCC
Confidence 9999999999999999999999988766541 12457899999999999999999999999975 458999999988
Q ss_pred ceEEEECCCCCCCCCCcEEEEEecCcccccccHHHHHHHHHHHhCcCCcceeecc
Q 010583 231 AFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWA 285 (507)
Q Consensus 231 ~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lIkkys~fl~~PI~l~~ 285 (507)
.|.+.+.+ ...+||+|+|+|+++..+|++..+|+++|++|++||++||+++.
T Consensus 181 ~~~i~~~~---~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 181 EYTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp EEEEEEEC---CCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred cEEEeeCC---CCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 99998742 45799999999999999999999999999999999999999974
No 23
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.74 E-value=2.8e-18 Score=175.77 Aligned_cols=150 Identities=20% Similarity=0.341 Sum_probs=109.6
Q ss_pred hcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHHHHHH
Q 010583 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIA 173 (507)
Q Consensus 95 ~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~edL~~~LgtIa 173 (507)
.....++..+|+|||+||+||+++ .|.|.++.++ ..|+|.|||+||+++++...+..++
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a~--------------------~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ 78 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGAT--------------------RIDIDIERGGAKLIRIRDNGCGIKKDELALALARHA 78 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTCS--------------------EEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTC
T ss_pred CCchhCHHHHHHHHHHHHHHCCCC--------------------eEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccc
Confidence 334568999999999999999742 3555554444 5899999999999999999998888
Q ss_pred hcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCC-eeEEEEecCCC-ceEEEECCCCCCCCCCcEEEE
Q 010583 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADG-AFAISEDTWNEPLGRGTEIRL 251 (507)
Q Consensus 174 ~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d-~~~~W~s~~~~-~f~I~~~~~~~~~~~GT~I~L 251 (507)
+|....+ +.+ .....+|++|+|++|+++++ +++|+|++.++ .+|.|..+++. .+.+.+. ..++||+|++
T Consensus 79 tsK~~~~-~d~---~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~GT~V~v 149 (333)
T 1b63_A 79 TSKIASL-DDL---EAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPA----AHPVGTTLEV 149 (333)
T ss_dssp CSSCCSH-HHH---HTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEE----CCCSEEEEEE
T ss_pred ccCcccc-chh---hhccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeecc----cCCCCCEEEE
Confidence 7632221 111 12357899999999999998 89999999754 47777766654 4444442 3478999999
Q ss_pred E------------ecCcccccccHHHHHHHHHHHhCc
Q 010583 252 H------------LRDEAGEYLEESKLKELVKKYSEF 276 (507)
Q Consensus 252 ~------------Lk~d~~e~le~~~i~~lIkkys~f 276 (507)
. ++....+ -.+|.+++++|+-.
T Consensus 150 ~~Lf~n~P~r~kflk~~~~e---~~~i~~~~~~~al~ 183 (333)
T 1b63_A 150 LDLFYNTPARRKFLRTEKTE---FNHIDEIIRRIALA 183 (333)
T ss_dssp ESTTTTCHHHHHTCCCHHHH---HHHHHHHHHHHHHH
T ss_pred ecccccchhhhhhhccHHHH---HHHHHHHHHHHhcc
Confidence 7 3322222 27889999999853
No 24
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.60 E-value=3.2e-16 Score=162.67 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=102.5
Q ss_pred hhchhhHHhhcCCC-----ChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCC-ccEEEEEECCCC
Q 010583 86 VSRLMDIIINSLYS-----NKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIG 159 (507)
Q Consensus 86 ~~rLl~lL~~~LYs-----~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiG 159 (507)
++.|-+.+++.+++ ++..+|+|||+||+||.+. .|.|.+..+ ...|+|.|||.|
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~--------------------~I~I~i~~~~~~~I~V~DnG~G 74 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGAT--------------------NIDLKLKDYGVDLIEVSDNGCG 74 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTCS--------------------EEEEEEEGGGTSEEEEEECSCC
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCC--------------------EEEEEEEeCCcEEEEEEECCCC
Confidence 44555566666665 5689999999999998631 355544433 358999999999
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCC-eeEEEEecCCCceEEEECC
Q 010583 160 MTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADGAFAISEDT 238 (507)
Q Consensus 160 MT~edL~~~LgtIa~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d-~~~~W~s~~~~~f~I~~~~ 238 (507)
|+++++...+..+++|....+ .........|.+|+|++|++++| +++|+|++.+. .+|.|..+++|.+.... +
T Consensus 75 i~~~~l~~~f~~~~tsK~~~~----~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~-~ 148 (365)
T 1h7s_A 75 VEEENFEGLTLKHHTSKIQEF----ADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKT-P 148 (365)
T ss_dssp CCGGGSGGGGC--------------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEE-E
T ss_pred cCHHHHHHHhhhccccccccc----cchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeec-c
Confidence 999999988888877632211 00011234799999999999999 99999998754 48999987666655433 2
Q ss_pred CCCCCCCCcEEEEE-ecCcc----cccc-----cHHHHHHHHHHHhCcCC
Q 010583 239 WNEPLGRGTEIRLH-LRDEA----GEYL-----EESKLKELVKKYSEFIN 278 (507)
Q Consensus 239 ~~~~~~~GT~I~L~-Lk~d~----~e~l-----e~~~i~~lIkkys~fl~ 278 (507)
....+||+|++. |-... ..|+ +..+|.+++++|+-+-|
T Consensus 149 --~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p 196 (365)
T 1h7s_A 149 --YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISA 196 (365)
T ss_dssp --CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCT
T ss_pred --cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCC
Confidence 245789999997 21110 1132 34788999999987754
No 25
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.3e-16 Score=159.73 Aligned_cols=152 Identities=17% Similarity=0.211 Sum_probs=105.4
Q ss_pred hcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCC-ccEEEEEECCCCCCHHHHHHHHHHHH
Q 010583 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTIA 173 (507)
Q Consensus 95 ~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMT~edL~~~LgtIa 173 (507)
.....++..+|.|||+||+||.+. .|.|.+..+ ...|+|.|||.||+++++...+...+
T Consensus 20 gevi~~~~~vv~eLv~NaiDA~a~--------------------~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ 79 (367)
T 3h4l_A 20 GQVITDLTTAVKELVDNSIDANAN--------------------QIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHY 79 (367)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTCS--------------------EEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEE
T ss_pred CCcccCHHHHHHHHHHHHHHCCCC--------------------EEEEEEEeCCEEEEEEEECCCCcChhHhccceeccc
Confidence 445568899999999999999742 355555333 35899999999999999886443333
Q ss_pred hcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEECCCCCCCCCCcEEEE--
Q 010583 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRL-- 251 (507)
Q Consensus 174 ~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L-- 251 (507)
.|....+ +. .......|.+|+|++|+++|| +|+|+|++.+..++.|..+++|.+.... + ...++||+|++
T Consensus 80 tsK~~~~-~D---l~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~-~--~~~~~GTtV~v~~ 151 (367)
T 3h4l_A 80 TSKIAKF-QD---VAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKT-T--TSRNKGTTVLVSQ 151 (367)
T ss_dssp C-------------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEE-E--ECCSSEEEEEEES
T ss_pred cCcCCch-hh---hhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeec-c--ccCCCCeEEEEch
Confidence 3322111 00 112245688899999999999 7999999877678999987666655432 2 24578999999
Q ss_pred -----------EecCcccccccHHHHHHHHHHHhCcC
Q 010583 252 -----------HLRDEAGEYLEESKLKELVKKYSEFI 277 (507)
Q Consensus 252 -----------~Lk~d~~e~le~~~i~~lIkkys~fl 277 (507)
+++....+| .+|.+++++|+-.-
T Consensus 152 LF~n~P~R~k~flk~~~~e~---~~i~~~l~~~Al~~ 185 (367)
T 3h4l_A 152 LFHNLPVRQKEFSKTFKRQF---TKCLTVIQGYAIIN 185 (367)
T ss_dssp TTTTCHHHHHHHHTTHHHHH---HHHHHHHHHHHHHC
T ss_pred hhccCchhhhhhccchHHHH---HHHHHHHHHHHhhC
Confidence 455444443 78999999997653
No 26
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.42 E-value=2e-14 Score=148.37 Aligned_cols=150 Identities=25% Similarity=0.327 Sum_probs=100.2
Q ss_pred hcCCCChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCc-cEEEEEECCCCCCHHHHHHHHHHHH
Q 010583 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIA 173 (507)
Q Consensus 95 ~~LYs~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~edL~~~LgtIa 173 (507)
.....++..+|.|||+||+||.+. .|.|.++.++ ..|+|.|||.||+++++...+...+
T Consensus 23 gevi~~~~~vv~eLv~NAidA~a~--------------------~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~ 82 (348)
T 3na3_A 23 GEVIQRPANAIKEMIENCLDAKST--------------------SIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFT 82 (348)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTCS--------------------EEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTC
T ss_pred cCcccCHHHHHHHHHHHHHHcCCC--------------------EEEEEEEeCCEEEEEEEECCcCcChHHhhhhhcccc
Confidence 334568899999999999999631 3455444444 4699999999999999886443333
Q ss_pred hcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCC-eeEEEEecCCCce-EEEECCCCCCCCCCcEEEE
Q 010583 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADGAF-AISEDTWNEPLGRGTEIRL 251 (507)
Q Consensus 174 ~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d-~~~~W~s~~~~~f-~I~~~~~~~~~~~GT~I~L 251 (507)
.|....+ +.+ ......|.+|+|++|+.+|| +++|+|+..++ .+|.|...++... .+.+. ...+||+|++
T Consensus 83 tsK~~~~-~dl---~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~----~~~~GTtV~v 153 (348)
T 3na3_A 83 TSKLQSF-EDL---ASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC----AGNQGTQITV 153 (348)
T ss_dssp CSSCCCC-------------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE----CCCSEEEEEE
T ss_pred ccccCcc-hhh---hccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe----cCCCCcEEEE
Confidence 3321111 000 11245799999999999998 89999999754 5888887654211 13332 3478999999
Q ss_pred E------------ecCcccccccHHHHHHHHHHHhCc
Q 010583 252 H------------LRDEAGEYLEESKLKELVKKYSEF 276 (507)
Q Consensus 252 ~------------Lk~d~~e~le~~~i~~lIkkys~f 276 (507)
. |+.... +..+|++++++|+-.
T Consensus 154 ~~LF~n~P~R~k~lk~~~~---e~~~i~~~l~~~Al~ 187 (348)
T 3na3_A 154 EDLFYNIATRRKALKNPSE---EYGKILEVVGRYSVH 187 (348)
T ss_dssp ESTTTTCHHHHHTSCCHHH---HHHHHHHHHHHHHHH
T ss_pred CcccccCchhhhhccccHH---HHHHHHHHHHHHHhh
Confidence 4 444333 347899999999765
No 27
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.09 E-value=1.8e-10 Score=110.30 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=89.4
Q ss_pred ChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHH--------HHHHHH
Q 010583 100 NKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL--------IKNLGT 171 (507)
Q Consensus 100 ~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL--------~~~Lgt 171 (507)
++...++|||.||+||... + ....|.|.++.+ ..|+|.|||.||+.+++ ...++.
T Consensus 17 ~~~~~v~Elv~NsiDa~~~--------------g--~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~ 79 (201)
T 3fv5_A 17 RPNHLGQEVIDNSVDEALA--------------G--HAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCR 79 (201)
T ss_dssp STHHHHHHHHHHHHHHHHT--------------T--CCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHC
T ss_pred ChhhhhHHHHHHHHHHHhc--------------C--CCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeee
Confidence 3578999999999999752 1 123566666644 48999999999999873 222333
Q ss_pred HHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCce--EEEECCCCCCCCCCcEE
Q 010583 172 IAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF--AISEDTWNEPLGRGTEI 249 (507)
Q Consensus 172 Ia~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f--~I~~~~~~~~~~~GT~I 249 (507)
.-.+|+ |-.. ......|..|+|+.|+..++++++|+|+..+ ..|.....+ |.. .+...........||+|
T Consensus 80 ~hatsK--~~~~----~~~~s~GfrGeglssinalS~~l~v~t~~~g-~~~~~~~~~-G~~~~~~~~~g~~~~~~~GT~V 151 (201)
T 3fv5_A 80 LHAGGK--FSNK----NYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFEN-GEKVQDLQVVGTCGKRNTGTSV 151 (201)
T ss_dssp C---------------------------CHHHHHTEEEEEEEEEETT-EEEEEEEET-TEEEEEEEEEEECCTTCCEEEE
T ss_pred eccccC--cCCC----cccccCcccceecchhhcccceEEEEEEecC-ceEEEEEeC-CEEcccceecccCCCCCCCeEE
Confidence 222222 3211 1122579999999999999999999999754 333332222 322 22221101114689999
Q ss_pred EEEecCcc--cccccHHHHHHHHHHHhCcC-Ccceeecc
Q 010583 250 RLHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWA 285 (507)
Q Consensus 250 ~L~Lk~d~--~e~le~~~i~~lIkkys~fl-~~PI~l~~ 285 (507)
++.-.... ..-.+...|.+.++.|+-.- ..-|.|..
T Consensus 152 ~f~Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~ 190 (201)
T 3fv5_A 152 HFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 190 (201)
T ss_dssp EEEECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99632111 12246688999999998432 24555544
No 28
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.02 E-value=2.1e-10 Score=122.75 Aligned_cols=148 Identities=21% Similarity=0.290 Sum_probs=96.9
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcC---CccEEEEEECCCCCCHHHHHHHHHHHHhcCch
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~---~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~ 178 (507)
...|+|||+||+||... . +..+.+.|.+..+. +...|+|.|||+||+.+++...+.....+++.
T Consensus 34 ~qvl~nLv~NAida~~~--------g-----g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~ 100 (471)
T 1mu5_A 34 YQTVRELIENSLDATDV--------H-----GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY 100 (471)
T ss_dssp HHHHHHHHHHHHHTTGG--------G-----TCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC
T ss_pred HHHHHHHHHHHHHHhhc--------C-----CCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc
Confidence 45789999999999853 0 11124455554432 33479999999999999998766544222221
Q ss_pred hHHHhhhccCCCccccccccceeeeeeecCE-----EEEEEeeCCCe-eEEEEe--c----CCCceEEEECCCCCCCCCC
Q 010583 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDDK-QYVWES--K----ADGAFAISEDTWNEPLGRG 246 (507)
Q Consensus 179 ~f~~~l~~~~~~~~IGqFGIGf~S~FmVadk-----V~V~Sk~~~d~-~~~W~s--~----~~~~f~I~~~~~~~~~~~G 246 (507)
......|.+|+|++++..+++. +.|.|+..++. ++.|.- . ++..+...+.+ .....+|
T Consensus 101 ---------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~G 170 (471)
T 1mu5_A 101 ---------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHG 170 (471)
T ss_dssp ---------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEE-CCTTCCE
T ss_pred ---------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccccccc-CCCCCCC
Confidence 1224568899999999999886 99999987544 555542 1 22233333321 1234789
Q ss_pred cEEEEEecCcccccccHHHHHHHHHHHh
Q 010583 247 TEIRLHLRDEAGEYLEESKLKELVKKYS 274 (507)
Q Consensus 247 T~I~L~Lk~d~~e~le~~~i~~lIkkys 274 (507)
|+|++.++.++.++ ..+|.+++++|+
T Consensus 171 T~V~v~l~~~~~e~--~~~I~~~l~~~a 196 (471)
T 1mu5_A 171 TSVAISIPGDWPKA--KSRIYEYIKRTY 196 (471)
T ss_dssp EEEEEEEECCHHHH--HHHHHHHHHHHH
T ss_pred EEEEEEEcCCcchH--HHHHHHHHHHHH
Confidence 99999988654322 267899999987
No 29
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.92 E-value=6.6e-10 Score=120.46 Aligned_cols=149 Identities=21% Similarity=0.276 Sum_probs=97.5
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcC---CccEEEEEECCCCCCHHHHHHHHHHHHhcCch
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~---~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~ 178 (507)
...|+|||+||+||... . +..+.+.|.+..+. +...|+|.|||+||+.+++...|....++++.
T Consensus 33 ~qvl~NLV~NAida~~~-------g------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~ 99 (530)
T 2zbk_B 33 YQTVRELIENSLDATDV-------H------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY 99 (530)
T ss_dssp HHHHHHHHHHHHTTTTT-------T------TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC
T ss_pred HHHHHHHHHHHHHHHhc-------c------CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc
Confidence 56899999999999852 0 11234566665543 33579999999999999998766443222221
Q ss_pred hHHHhhhccCCCccccccccceeeeeeecC-----EEEEEEeeCCCe-eEEEEe----c--CCCceEEEECCCCCCCCCC
Q 010583 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWES----K--ADGAFAISEDTWNEPLGRG 246 (507)
Q Consensus 179 ~f~~~l~~~~~~~~IGqFGIGf~S~FmVad-----kV~V~Sk~~~d~-~~~W~s----~--~~~~f~I~~~~~~~~~~~G 246 (507)
......|.+|+|++++..+++ ++.|.|+..++. ++.+.- . ++......+.+ .....+|
T Consensus 100 ---------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~G 169 (530)
T 2zbk_B 100 ---------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHG 169 (530)
T ss_dssp ---------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEE-CCSSCCE
T ss_pred ---------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccC-CCCCCCC
Confidence 112456899999999999887 699999876543 554441 1 11122333321 1124789
Q ss_pred cEEEEEecCcccccccHHHHHHHHHHHhC
Q 010583 247 TEIRLHLRDEAGEYLEESKLKELVKKYSE 275 (507)
Q Consensus 247 T~I~L~Lk~d~~e~le~~~i~~lIkkys~ 275 (507)
|+|++.++.++.++ ...+.+++++|+-
T Consensus 170 T~V~v~l~~~~~e~--~~~i~~~l~~~Al 196 (530)
T 2zbk_B 170 TSVAISIPGDWPKA--KSRIYEYIKRTYI 196 (530)
T ss_dssp EEEEEEEECCHHHH--HHHHHHHHHHHHH
T ss_pred cEEEEEeccchhhH--HHHHHHHHHHHHH
Confidence 99999988654322 2678899998864
No 30
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.90 E-value=1.2e-09 Score=114.18 Aligned_cols=148 Identities=17% Similarity=0.200 Sum_probs=93.9
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH-------HHHHHHh
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAK 174 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~-------~LgtIa~ 174 (507)
...|+|||.||+|+.-+ . ....|.|.++.+ ..|+|.|||.||+.+++.. .+.+...
T Consensus 34 ~~~v~Elv~N~iD~a~~--~--------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~ 96 (390)
T 1kij_A 34 HHLFKEILDNAVDEALA--G--------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLH 96 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--T--------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhhh--C--------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeee
Confidence 56899999999999842 1 123577766654 4899999999999998743 2233223
Q ss_pred cCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCC-ceEEEECCCCCCCCCCcEEEEEe
Q 010583 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADG-AFAISEDTWNEPLGRGTEIRLHL 253 (507)
Q Consensus 175 Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~-~f~I~~~~~~~~~~~GT~I~L~L 253 (507)
.|.+ |-. .......|..|+|+.++..++++++|+|+..+ ..|......+. ...+..........+||+|++.-
T Consensus 97 ~~~k-f~~----~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g-~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~P 170 (390)
T 1kij_A 97 SGGK-FEQ----GAYKVSGGLHGVGASVVNALSEWTVVEVFREG-KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKP 170 (390)
T ss_dssp EESG-GGG----SSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEEE
T ss_pred eccc-ccC----ccccccCCCCCcceeeecccccceEEEEecCC-cEEEEEEcCCcccccceeeccccCCCCCcEEEEEE
Confidence 3322 211 11122468999999999999999999999754 44443333321 22333321100146899999962
Q ss_pred cCccccc----ccHHHHHHHHHHHh
Q 010583 254 RDEAGEY----LEESKLKELVKKYS 274 (507)
Q Consensus 254 k~d~~e~----le~~~i~~lIkkys 274 (507)
+...| .+...|.+.++.++
T Consensus 171 --d~~~F~~~~~~~~~l~~rl~~~A 193 (390)
T 1kij_A 171 --DPEIFGNLRFDPSKIRARLREVA 193 (390)
T ss_dssp --CHHHHTTCCCCHHHHHHHHHHHH
T ss_pred --ChHHhCCccccHHHHHHHHHHhc
Confidence 22212 35678899999887
No 31
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.78 E-value=1.7e-08 Score=105.57 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=98.4
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHH--------HHHHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIA 173 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~ed--------L~~~LgtIa 173 (507)
...+.|||.||+||.-. + ..-.|.|.++.++ .|+|.|||.||+.++ +...|+..-
T Consensus 33 ~~lv~ElvdNsiD~a~~--------------g--~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lh 95 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA--------------G--HAKRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--------------T--CCSEEEEEECTTS-CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhc--------------C--CCCEEEEEEecCC-EEEEEECCCCcCcccccccCcchhhheeeeec
Confidence 67999999999999741 1 1236777776554 899999999999888 555555533
Q ss_pred hcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCc-eEEEECCCCCCCCCCcEEEEE
Q 010583 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEIRLH 252 (507)
Q Consensus 174 ~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I~L~ 252 (507)
.+|+ | ....-...-|..|+|..++=.++.+++|+|+..+ ..|..+...+.. -.+..........+||+|+..
T Consensus 96 agsK--f----~~~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~ 168 (390)
T 1s16_A 96 AGGK--F----SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW 168 (390)
T ss_dssp EESC--S----SSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE
T ss_pred ccCC--c----CCCcccccCCccccchHHHHHhhcccEEEEEECC-cEEEEEEeCCcccccceecccccCCCCceEEEEE
Confidence 3333 2 1011123568899999999999999999999743 444433333211 112221111112689999987
Q ss_pred ecCccccc----ccHHHHHHHHHHHhCcC-Ccceeec
Q 010583 253 LRDEAGEY----LEESKLKELVKKYSEFI-NFPIYIW 284 (507)
Q Consensus 253 Lk~d~~e~----le~~~i~~lIkkys~fl-~~PI~l~ 284 (507)
- +..-| .+...|...++.++-.- ..-|.|.
T Consensus 169 P--d~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~ 203 (390)
T 1s16_A 169 P--DETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFK 203 (390)
T ss_dssp E--CGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred E--CccccCcccccHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 22222 46788889998887543 3444544
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.69 E-value=4.1e-09 Score=116.16 Aligned_cols=158 Identities=21% Similarity=0.268 Sum_probs=96.5
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcC-CccEEEEEECCCCCCHHHHHHHHHHHHhcCchhH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~-~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f 180 (507)
...|+|||+||+||.... +..+.+.|.+..+. +...|+|.|||.||+.+++...|.... ++.+ |
T Consensus 39 ~~Vl~ELV~NAIDa~~~~-------------g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~-atsk-f 103 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEEA-------------GILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLL-YGSR-F 103 (621)
T ss_dssp HHHHHHHHHHHHHHHTTT-------------SCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCC-CC---C
T ss_pred HHHHHHHHHHHHHHHhhc-------------CCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhc-cCCc-c
Confidence 567899999999998520 11123444444433 235799999999999999987553321 1111 1
Q ss_pred HHhhhccCCCccccccccceeeeeeecCE-----EEEEEeeCCC-eeEEEEe-----cCCCceE-EEECCCCCCCCCCcE
Q 010583 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDD-KQYVWES-----KADGAFA-ISEDTWNEPLGRGTE 248 (507)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGf~S~FmVadk-----V~V~Sk~~~d-~~~~W~s-----~~~~~f~-I~~~~~~~~~~~GT~ 248 (507)
. ......|..|+|+.++..+++. +.|.|+..++ .++.+.. .+.+... ....+ ....+||+
T Consensus 104 ~------~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~--~~~~~GT~ 175 (621)
T 2q2e_B 104 H------ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRD--WFRPHGTQ 175 (621)
T ss_dssp C------CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECC--CSCSSCCC
T ss_pred c------cccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccccccccccc--CCCCCCCE
Confidence 1 0112348999999999888877 5899987643 5666653 2333321 12211 23468999
Q ss_pred EEEEecCccccccc--HHHHHHHHHHHhCcC-Ccceeecc
Q 010583 249 IRLHLRDEAGEYLE--ESKLKELVKKYSEFI-NFPIYIWA 285 (507)
Q Consensus 249 I~L~Lk~d~~e~le--~~~i~~lIkkys~fl-~~PI~l~~ 285 (507)
|++.++.+ |.. ...|.++++.|+-.- ..-|.+..
T Consensus 176 V~~~f~~~---~~~~~~~~I~~~L~~lAllnpgv~I~L~d 212 (621)
T 2q2e_B 176 IELEMRAA---YVKGRRQSIYEYLKATAIVNPHARITLID 212 (621)
T ss_dssp EEEECSCC---CCCCSSSSSHHHHHHHHHHCCSCEEEECC
T ss_pred EEEEecCc---cchHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence 99998743 333 256778888776442 34444443
No 33
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.67 E-value=6.7e-08 Score=101.16 Aligned_cols=157 Identities=19% Similarity=0.207 Sum_probs=98.3
Q ss_pred ChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHH--------HHHHHHH
Q 010583 100 NKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGT 171 (507)
Q Consensus 100 ~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~ed--------L~~~Lgt 171 (507)
.+...+.|||.||+||.-+ + ..-.|.|.++.++ .|+|.|||.||+.++ +.-.|+.
T Consensus 34 gl~~lv~ElvdNsiDea~~--------------g--~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~~~~~~elv~~~ 96 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA--------------G--HCKEIIVTIHADN-SVSVQDDGRGIPTGIHPEEGVSAAEVIMTV 96 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------T--CCCEEEEEECTTS-CEEEEECSSCCCCSBCTTTSSBHHHHHHHS
T ss_pred CHHHHHHHHHHhHHHHHhc--------------C--CCCEEEEEEeCCC-EEEEEECCCCcccCcccccCcchHHHhhee
Confidence 4577899999999999742 1 1236777776654 999999999999887 3334543
Q ss_pred HHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCC---CceEEEECCCCCCCCCCcE
Q 010583 172 IAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD---GAFAISEDTWNEPLGRGTE 248 (507)
Q Consensus 172 Ia~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~---~~f~I~~~~~~~~~~~GT~ 248 (507)
.-.+|+ | ....-.-.-|..|+|..|+=.++.+++|+|+..+ ..|..+...+ ....+.. ....+||+
T Consensus 97 lhagsK--f----~~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~l~~~~----~~~~~GT~ 165 (391)
T 1ei1_A 97 LHAGGK--F----DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTG----ETEKTGTM 165 (391)
T ss_dssp TTEESC--S----SSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEEE----ECSCCEEE
T ss_pred ccccCC--c----CCCcccccCCccccchHHHHHhcCeEEEEEEeCC-cEEEEEEcCCcccccceecc----CcCCCccE
Confidence 433433 2 1111123568899999999999999999998754 4443333222 1111111 12368999
Q ss_pred EEEEecCcc--c-ccccHHHHHHHHHHHhCcC-Ccceeec
Q 010583 249 IRLHLRDEA--G-EYLEESKLKELVKKYSEFI-NFPIYIW 284 (507)
Q Consensus 249 I~L~Lk~d~--~-e~le~~~i~~lIkkys~fl-~~PI~l~ 284 (507)
|+..-...- . .-.+...|...++.++-.- ..-|.|.
T Consensus 166 V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~ 205 (391)
T 1ei1_A 166 VRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLR 205 (391)
T ss_dssp EEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEE
Confidence 998722111 1 1235678888888876443 3445554
No 34
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.64 E-value=8.6e-08 Score=93.13 Aligned_cols=156 Identities=21% Similarity=0.232 Sum_probs=91.1
Q ss_pred hhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHH--------HHHHHHH
Q 010583 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL--------IKNLGTI 172 (507)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL--------~~~LgtI 172 (507)
+...++|||.||+||... + ..-.|.|.++.+ ..|+|.|||.||+.++. .-.|+..
T Consensus 36 l~~lv~ElvdNsiDea~~--------------g--~~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~l 98 (220)
T 4duh_A 36 LHHMVFEVVDNAIDEALA--------------G--HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 (220)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------S--CCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHhc--------------C--CCCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeec
Confidence 467899999999999752 1 123566666654 48999999999998753 2223333
Q ss_pred HhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCC---CceEEEECCCCCCCCCCcEE
Q 010583 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD---GAFAISEDTWNEPLGRGTEI 249 (507)
Q Consensus 173 a~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~---~~f~I~~~~~~~~~~~GT~I 249 (507)
-.+|+ | ....-...-|..|+|..++=.++.+++|+++..+ ..|..+...+ ....+.. ....+||+|
T Consensus 99 hag~K--f----d~~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~~g----~~~~~GT~V 167 (220)
T 4duh_A 99 HAGGK--F----DDNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTG----ETEKTGTMV 167 (220)
T ss_dssp TCSSC--C----CTTC--------CCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSSCEEEE----ECSCCEEEE
T ss_pred ccCCC--c----CCCccccccCccceecchhcccccceEEEEEECC-EEEEEEecCCcCcCCceecc----ccCCCCcEE
Confidence 33332 2 1111124569999999999999999999998754 3333222222 1111111 134689999
Q ss_pred EEEecCcc---cccccHHHHHHHHHHHhCcCCc--ceeecc
Q 010583 250 RLHLRDEA---GEYLEESKLKELVKKYSEFINF--PIYIWA 285 (507)
Q Consensus 250 ~L~Lk~d~---~e~le~~~i~~lIkkys~fl~~--PI~l~~ 285 (507)
+..-...- ..-++.+.|...++.++ |++- -|.|+.
T Consensus 168 ~F~Pd~~~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 207 (220)
T 4duh_A 168 RFWPSLETFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRD 207 (220)
T ss_dssp EEEECTTTCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEE
T ss_pred EEEECHHHhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEc
Confidence 98632211 10235678888888887 5544 455544
No 35
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.56 E-value=9.6e-08 Score=100.32 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=96.1
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHH--------HHHHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIA 173 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~ed--------L~~~LgtIa 173 (507)
...+.|||.||+||... + ...-.|.|.++.++..|+|.|||.||+.++ +.-.|++.-
T Consensus 54 ~~lv~EivdNsiDe~~~-------~--------g~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lh 118 (400)
T 1zxm_A 54 YKIFDEILVNAADNKQR-------D--------PKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLL 118 (400)
T ss_dssp HHHHHHHHHHHHHHHHH-------C--------TTCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSS
T ss_pred HHHHHHHHhhHHhHHhh-------c--------CCCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeec
Confidence 46889999999999831 1 112357777766557999999999999876 443454333
Q ss_pred hcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeC-CCeeEEEEecCCCc-eEEEECCCCCCCCCCcEEEE
Q 010583 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGA-FAISEDTWNEPLGRGTEIRL 251 (507)
Q Consensus 174 ~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~-~d~~~~W~s~~~~~-f~I~~~~~~~~~~~GT~I~L 251 (507)
.+|+ |-. ..-.-.-|..|+|..++=.++.+++|+++.. ++..|...-..+.. -....... ....+||+|+.
T Consensus 119 agsK--f~~----~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~-~~~~~GT~V~F 191 (400)
T 1zxm_A 119 TSSN--YDD----DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKP-FNGEDYTCITF 191 (400)
T ss_dssp EESC--CCG----GGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEE-CCSCCEEEEEE
T ss_pred ccCC--CCC----CcccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceecc-CCCCCccEEEE
Confidence 3333 211 1112357999999999999999999999874 34444433222211 11111100 12357999998
Q ss_pred EecCcc---cccccHHH---HHHHHHHHhCcC-Ccceeeccc
Q 010583 252 HLRDEA---GEYLEESK---LKELVKKYSEFI-NFPIYIWAS 286 (507)
Q Consensus 252 ~Lk~d~---~e~le~~~---i~~lIkkys~fl-~~PI~l~~~ 286 (507)
.-.... .+ ++.+. |.+.++.++-.- ..-|.+..+
T Consensus 192 ~Pd~~iF~~~e-f~~~~~~~l~~rlrelA~lnpgv~i~l~de 232 (400)
T 1zxm_A 192 QPDLSKFKMQS-LDKDIVALMVRRAYDIAGSTKDVKVFLNGN 232 (400)
T ss_dssp EECGGGGTCSS-CCHHHHHHHHHHHHHHHHHSSSCEEEETTE
T ss_pred EEChHHhCcee-ecHHHHHHHHHHHHHHHhhCCCcEEEEecC
Confidence 733221 12 24444 556666665321 355666543
No 36
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.52 E-value=1.1e-07 Score=92.67 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=93.1
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHH-------HHHHHHHHHh
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED-------LIKNLGTIAK 174 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~ed-------L~~~LgtIa~ 174 (507)
...++|+|.||+|+... + ....|.|.++.+ ..|+|.|||.||+.++ +.-.|+..-.
T Consensus 42 ~~~v~Eiv~NaiD~~~~--------------g--~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lha 104 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS--------------G--FGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHA 104 (226)
T ss_dssp HHHHHHHHHHHHHHHHT--------------T--CCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC-
T ss_pred HHHHHHHHHHHHHHHhc--------------C--CCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecc
Confidence 46789999999999742 1 123577777654 4899999999999987 4433433333
Q ss_pred cCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCC----CceE-EEECCCCCCCCCCcEE
Q 010583 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD----GAFA-ISEDTWNEPLGRGTEI 249 (507)
Q Consensus 175 Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~----~~f~-I~~~~~~~~~~~GT~I 249 (507)
+|+ |-. ..-...-|..|+|..++=.++.+++|+++..+ ..|..+...+ .... +... .+...||+|
T Consensus 105 g~K--fd~----~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g-~~~~q~f~~Gg~~~~~l~~ig~~---~~~~~GT~V 174 (226)
T 4emv_A 105 GGK--FGQ----GGYKTSGGLHGVGSSVVNALSSWLEVEITRDG-AVYKQRFENGGKPVTTLKKIGTA---LKSKTGTKV 174 (226)
T ss_dssp -------------------CGGGCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTTEESSCSEEEEEC---CTTCCEEEE
T ss_pred cCc--cCc----cceEeccccccccchhhhhcccceEEEEEeCC-cEEEEEECCCCEEcCCceEeccc---CCCCCCeEE
Confidence 333 321 11134569999999999999999999998754 3333222222 1112 2221 124789999
Q ss_pred EEEecCcc--cccccHHHHHHHHHHHhCcC--Ccceeecc
Q 010583 250 RLHLRDEA--GEYLEESKLKELVKKYSEFI--NFPIYIWA 285 (507)
Q Consensus 250 ~L~Lk~d~--~e~le~~~i~~lIkkys~fl--~~PI~l~~ 285 (507)
+..-...- ..-++.+.|...++.++ |+ ..-|.|+.
T Consensus 175 ~F~PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 213 (226)
T 4emv_A 175 TFMPDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLTD 213 (226)
T ss_dssp EEEECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEEE
T ss_pred EEEECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEEe
Confidence 98632221 11246778888888887 54 34556654
No 37
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.51 E-value=2.6e-07 Score=96.00 Aligned_cols=153 Identities=10% Similarity=0.113 Sum_probs=90.8
Q ss_pred ChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchh
Q 010583 100 NKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSA 179 (507)
Q Consensus 100 ~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~ 179 (507)
.+...++|||.||+||... + ..-.|.|.++.++ .|+|.|||.||+. |+. | ..-.+|+
T Consensus 30 gl~~~v~ElvdNsiDe~~~--------------g--~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~v--~-~lhagsK-- 86 (369)
T 3cwv_A 30 GLHHLVYFLLDVAYEEARR--------------G--ECRDVVLEVGGDG-SIALFCTSRTVTA-ENL--V-RVATGAG-- 86 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------T--CCSEEEEEECTTS-CEEEEEEESSCCH-HHH--H-HHHTTTT--
T ss_pred hHHHHHHHHHhhhHhHHhh--------------C--CCCEEEEEEeCCC-EEEEEECCCCcCH-hHe--e-eeecCCC--
Confidence 3467899999999999742 1 1236777776554 8999999999999 554 2 3322332
Q ss_pred HHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCce-----EEEEC-CCCCCCCCCcEEEEEe
Q 010583 180 FVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF-----AISED-TWNEPLGRGTEIRLHL 253 (507)
Q Consensus 180 f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f-----~I~~~-~~~~~~~~GT~I~L~L 253 (507)
| ......+..+.-| |..|+-.++.+++|+|+..+ ..|.....+ |.- ...+. +.+...++||+|+..
T Consensus 87 f----~~~~~~~~y~vsG-Gls~vnalSs~l~v~t~r~g-~~~~~~~~~-G~~~~~~~~~~~l~~~g~~~~~GT~V~f~- 158 (369)
T 3cwv_A 87 F----LGRPPGDGWGWDS-MLVVSLALSSRYQVDIWADG-RQWRVMGEH-GHPQGEGAAVTPMEPMPVSAERGVRVHFV- 158 (369)
T ss_dssp G----GGSSCCCSTTTTS-SHHHHHHTEEEEEEEEEETT-EEEEEEEET-TEECTTCEEESSCCCCSSCCSEEEEEEEE-
T ss_pred c----CCCcccccccccC-HHHHHHHhhceEEEEEEECC-CEEEEEEeC-CcccccccccCCceEecccCCCCCEEEEE-
Confidence 2 1100001222225 87777888899999999754 444443333 221 01111 112234789999987
Q ss_pred cCccccc----ccHHHHHHHHHHHhCcC-Ccceeec
Q 010583 254 RDEAGEY----LEESKLKELVKKYSEFI-NFPIYIW 284 (507)
Q Consensus 254 k~d~~e~----le~~~i~~lIkkys~fl-~~PI~l~ 284 (507)
++..-| .+...|.+.++.++-.- ..-|.+.
T Consensus 159 -Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~ 193 (369)
T 3cwv_A 159 -PDATIFEVLAFDRARLSRRCNELAALAPGLRVSFA 193 (369)
T ss_dssp -ECTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred -ECHHHhCCccccHHHHHHHHHHHcCcCCCcEEEEE
Confidence 222222 46688999999887432 2344443
No 38
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.27 E-value=9.9e-07 Score=92.83 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=87.6
Q ss_pred ChhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHH-------HHH-HHH
Q 010583 100 NKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL-------IKN-LGT 171 (507)
Q Consensus 100 ~~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL-------~~~-Lgt 171 (507)
++...+.|+|.||+|+.-. + ..-.|.|.++.+ ..|+|.|||.||+.+.. ... |+.
T Consensus 50 ~~~hlv~EivdNsiDea~a--------------g--~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~ 112 (408)
T 3lnu_A 50 RPNHLAQEVIDNSVDEALA--------------G--HAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGVELILTR 112 (408)
T ss_dssp STHHHHHHHHHHHHHHHHT--------------T--SCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHC
T ss_pred CcchhhHHHHHHHHHHhhc--------------C--CCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcchheEEEe
Confidence 3477999999999999742 1 123677777654 48999999999998762 223 333
Q ss_pred HHhcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCC---CceE-EEECCCCCCCCCCc
Q 010583 172 IAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD---GAFA-ISEDTWNEPLGRGT 247 (507)
Q Consensus 172 Ia~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~---~~f~-I~~~~~~~~~~~GT 247 (507)
+-.+|+ |-. ..-.-.-|..|+|..++=.++.+++|+++..+ ..|..+...+ .... +... .....||
T Consensus 113 lhaggK--fd~----~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG-k~~~q~f~~G~~~~~l~~ig~~---~~~~~GT 182 (408)
T 3lnu_A 113 LHAGGK--FNN----RNYTFSGGLHGVGVSVVNALSTKVELFIKREG-SEHRMEFRDGNAASKLEVVGTV---GKKNTGT 182 (408)
T ss_dssp C--------------------------CHHHHHHTEEEEEEEEEETT-EEEEEEEETTEECSCCEEEEEC---CTTCCEE
T ss_pred cccCCC--cCC----CceeecCCccccccceehhccCeEEEEEEECC-EEEEEEECCCEECCCceEeccC---cCCCCCc
Confidence 333333 321 11123568999999999999999999998754 3333222222 1112 2221 1236899
Q ss_pred EEEEEecCcc--cccccHHHHHHHHHHHhCcC-Ccceeecc
Q 010583 248 EIRLHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWA 285 (507)
Q Consensus 248 ~I~L~Lk~d~--~e~le~~~i~~lIkkys~fl-~~PI~l~~ 285 (507)
+|+..-...- ..-++.+.|...++.++=.. ..-|.|..
T Consensus 183 ~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~d 223 (408)
T 3lnu_A 183 RLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLHD 223 (408)
T ss_dssp EEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 9998632221 11246678888888876332 24566654
No 39
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=98.09 E-value=5.4e-06 Score=79.15 Aligned_cols=141 Identities=21% Similarity=0.324 Sum_probs=82.3
Q ss_pred hhHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhH
Q 010583 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (507)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f 180 (507)
+...++|||.||+|+.-. + ....|.|.++.+ ..|+|.|||.||+.+ ..+.|+....
T Consensus 32 l~~~v~Elv~NsiD~~~a--------------g--~~~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~~ 87 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALA--------------G--YANQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPAV 87 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------T--SCCEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBHH
T ss_pred hHHHHHHHHHHHHhHHhc--------------C--CCcEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCccc
Confidence 467889999999998631 1 123566666544 499999999999986 2234443221
Q ss_pred HHhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCC-ceEEEECCCCCCCCCCcEEEEEecCcccc
Q 010583 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADG-AFAISEDTWNEPLGRGTEIRLHLRDEAGE 259 (507)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~-~f~I~~~~~~~~~~~GT~I~L~Lk~d~~e 259 (507)
+ .+ |+ ..++=.++.+++|+++..+ ..|..+...+. ...+...+ ....+||+|+.. ++..-
T Consensus 88 -e---------~i--~t--~SvVNALS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~i~--~~~~~GT~V~F~--Pd~~i 148 (198)
T 3ttz_A 88 -E---------VI--LT--SSVVNALSQDLEVYVHRNE-TIYHQAYKKGVPQFDLKEVG--TTDKTGTVIRFK--ADGEI 148 (198)
T ss_dssp -H---------HH--HH--TCHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEEE--ECSCCEEEEEEE--ECTTT
T ss_pred -c---------cc--ce--eEehhhhcCeEEEEEEECC-cEEEEEEeCCEECCCceecc--CCCCCCcEEEEE--ECHHH
Confidence 1 11 22 2223346689999998755 33432222221 11111111 124689999986 33333
Q ss_pred c-----ccHHHHHHHHHHHhCcCCc--ceeecc
Q 010583 260 Y-----LEESKLKELVKKYSEFINF--PIYIWA 285 (507)
Q Consensus 260 ~-----le~~~i~~lIkkys~fl~~--PI~l~~ 285 (507)
| .+.+.|.+.++.++ |++- -|.|+.
T Consensus 149 F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 180 (198)
T 3ttz_A 149 FTETTVYNYETLQQRIRELA-FLNKGIQITLRD 180 (198)
T ss_dssp CCSCCCCCHHHHHHHHHHHH-HHSTTCEEEEEE
T ss_pred hccCCccCHHHHHHHHHHHh-hcCCCCEEEEEe
Confidence 3 46688999999888 5544 445543
No 40
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.87 E-value=1.3e-05 Score=84.51 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=80.5
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHH--------HHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI--------KNLGTIA 173 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~--------~~LgtIa 173 (507)
...+.|+|.||+|+... ++ ..-.|.|.++.++..|+|.|||.||+.+... -.|+++-
T Consensus 66 ~~lv~EivdNaiDe~~~-------~g--------~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~Lh 130 (418)
T 1pvg_A 66 FKIFDEILVNAADNKVR-------DP--------SMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLL 130 (418)
T ss_dssp HHHHHHHHHHHHHHHHH-------CT--------TCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSS
T ss_pred HHHHHHHHhCHHHHHHh-------cC--------CCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEe
Confidence 45789999999999842 11 1236777777766799999999999876422 1243333
Q ss_pred hcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeC-CCeeE--EEEecC---CCceEEEECCCCCCCCCCc
Q 010583 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKA---DGAFAISEDTWNEPLGRGT 247 (507)
Q Consensus 174 ~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~-~d~~~--~W~s~~---~~~f~I~~~~~~~~~~~GT 247 (507)
.+|+ | ..+.-.-.-|..|||...+=.++.+++|+++.. ++..| .|+... ... .+... ....+||
T Consensus 131 aGgK--f----d~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p-~i~~~---~~~~tGT 200 (418)
T 1pvg_A 131 TSSN--Y----DDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPP-KITSY---KKGPSYT 200 (418)
T ss_dssp EESC--C----CTTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCC-EEEEC---CSSCCEE
T ss_pred cccc--c----CCCceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCC-eeccc---CCCCCce
Confidence 3333 2 001112346999999988888999999999863 44444 354310 112 23332 1236899
Q ss_pred EEEEEecC
Q 010583 248 EIRLHLRD 255 (507)
Q Consensus 248 ~I~L~Lk~ 255 (507)
+|+..-..
T Consensus 201 ~V~F~PD~ 208 (418)
T 1pvg_A 201 KVTFKPDL 208 (418)
T ss_dssp EEEEEECG
T ss_pred EEEEEECh
Confidence 99976443
No 41
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.56 E-value=4.9e-05 Score=66.51 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=51.5
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
...|.|||.||+.+... . .....+.|.+..+.+.-.|+|.|||.||+ ++...+ ....+
T Consensus 41 ~~il~~l~~Nai~h~~~-------~------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~----~~~~~--- 98 (145)
T 1th8_A 41 KTVVSEAVTNAIIHGYN-------N------DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEAR----QPLFT--- 98 (145)
T ss_dssp HHHHHHHHHHHHHTTST-------T------CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHT----CCC-----
T ss_pred HHHHHHHHHHHHHHhcC-------C------CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhh----ccccc---
Confidence 34788999999887631 0 11234566666665556799999999999 444322 21110
Q ss_pred HhhhccCCCccccccccceeeeeeecCEEEEEEe
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISK 215 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk 215 (507)
.. ...+..|+|++-+-.+++++.+.+.
T Consensus 99 -----~~--~~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 99 -----TK--PELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp ------------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred -----CC--CCCCCCcchHHHHHHHHheEEEEeC
Confidence 00 1224579999888777776655544
No 42
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.51 E-value=4.1e-05 Score=72.81 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=36.7
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~ 167 (507)
..+|.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+.+..
T Consensus 157 ~~il~nLl~NA~~~~~----------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 206 (268)
T 4ew8_A 157 AQTLDHLVENALRQTP----------------PGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAH 206 (268)
T ss_dssp HHHHHHHHHHHHHHSC----------------TTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTT
T ss_pred HHHHHHHHHHHHHhCC----------------CCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHH
Confidence 3578889999888753 1234566666655556799999999999987764
No 43
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.44 E-value=4.7e-05 Score=70.90 Aligned_cols=74 Identities=26% Similarity=0.420 Sum_probs=47.8
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
..+|.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+. ...+
T Consensus 125 ~~il~nLl~NA~~~~~----------------~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~----~~~~--- 181 (244)
T 3d36_A 125 RQCLLNVMKNAIEAMP----------------NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGE----PYFT--- 181 (244)
T ss_dssp HHHHHHHHHHHHHTCT----------------TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTS----TTCC---
T ss_pred HHHHHHHHHHHHHhcc----------------CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhc----cccc---
Confidence 4467788888887752 1234566666666666899999999999998774331 1110
Q ss_pred HhhhccCCCccccccccceeeeeee
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
..-.+..|+|++.|-.+
T Consensus 182 --------~~~~~g~GlGL~i~~~i 198 (244)
T 3d36_A 182 --------TKGVKGTGLGMMVVYRI 198 (244)
T ss_dssp --------SSGGGCCSCHHHHHHHH
T ss_pred --------CCCCCCcchhHHHHHHH
Confidence 01124579998776555
No 44
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.40 E-value=2.8e-05 Score=71.45 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=31.1
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~~ 182 (507)
.+|.+||+||+.+... ...|.|...... |+|.|||.||+.+++...+....+ ++
T Consensus 120 ~il~nLl~NAi~~~~~------------------~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if~~f~~-~~----- 173 (222)
T 3jz3_A 120 LLVRNLLDNAVRYSPQ------------------GSVVDVTLNADN--FIVRDNGPGVTPEALARIGERFYR-PP----- 173 (222)
T ss_dssp HHHHHHHHHHHHTCCT------------------TCEEEEEECSSE--EEEECSCC------------------------
T ss_pred HHHHHHHHHHHHcCCC------------------CCeEEEEEccCe--EEEEECCCCCCHHHHHHHHhhhcc-CC-----
Confidence 4778899999877521 124555554433 999999999999988764432221 11
Q ss_pred hhhccCCCccccccccceeeeeee
Q 010583 183 KMQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 183 ~l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
...-+..|+|++-|-.+
T Consensus 174 -------~~~~~g~GlGL~i~~~i 190 (222)
T 3jz3_A 174 -------GQTATGSGLGLSIVQRI 190 (222)
T ss_dssp ---------------CTHHHHHHH
T ss_pred -------CCCCCcccccHHHHHHH
Confidence 11224679998766544
No 45
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.24 E-value=0.00029 Score=64.98 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=30.2
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHH
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL 165 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL 165 (507)
.++||+.||..+.. ...+.|.+..+.+.-.|+|.|||.||+.+.+
T Consensus 134 il~nll~Na~k~~~-----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHSQ-----------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHTC-----------------CSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhCC-----------------CCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 67888888876641 1245666666666668999999999998765
No 46
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.23 E-value=3.7e-05 Score=69.25 Aligned_cols=79 Identities=23% Similarity=0.341 Sum_probs=45.9
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcC--CccEEEEEECCCCCCHHHHHHHHHHHHhcCchh
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK--EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSA 179 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~--~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~ 179 (507)
..+|.+||.||+.+.. ....+.|.+.... +.-.|+|.|||.||+.+++...+.... ++..
T Consensus 45 ~~il~nLl~NAi~~~~----------------~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~-~~~~- 106 (177)
T 3sl2_A 45 TQVLDNIISNALKYSP----------------EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFY-RVDK- 106 (177)
T ss_dssp HHHHHHHHHHHHHTCC----------------TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTC-CCC--
T ss_pred HHHHHHHHHHHHHhCC----------------CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhc-cCCC-
Confidence 3577889999888752 1234556664433 334689999999999987764332111 1110
Q ss_pred HHHhhhccCCCccccccccceeeeeee
Q 010583 180 FVEKMQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 180 f~~~l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
......+..|+|++.+-.+
T Consensus 107 --------~~~~~~~g~GlGL~iv~~~ 125 (177)
T 3sl2_A 107 --------ARTRKLGGTGLGLAIAKEM 125 (177)
T ss_dssp -------------CCCCCCHHHHHHHH
T ss_pred --------CCCCCCCCCCcCHHHHHHH
Confidence 0112235789998766544
No 47
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.20 E-value=0.00046 Score=70.93 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=64.0
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
...|.+||.||+.|...-.. .. ...+.+.|.+..+.+.-.|+|.|||.||+.+++...|.... ++...-
T Consensus 233 ~~il~NLl~NAik~~~~~~~----~~-----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~-~~~~~~- 301 (394)
T 2btz_A 233 YHMLFELFKNAMRATVESHE----SS-----LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMY-STAPTP- 301 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTT----TC-----SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTT-TCCC---
T ss_pred HHHHHHHHHHHHHHhhhccc----cC-----CCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccc-cCCCCC-
Confidence 45788999999999864100 00 11234666666655556799999999999999886442211 111100
Q ss_pred HhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEECCCCCCCCCCcEEEEEecC
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (507)
.. .......+.+|+|++-|-.+++. + +|...+... .+.||+++|.|..
T Consensus 302 -~~--~~~~~~~~G~GLGL~i~~~i~~~------~------------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 302 -QP--GTGGTPLAGFGYGLPISRLYAKY------F------------QGDLQLFSM-----EGFGTDAVIYLKA 349 (394)
T ss_dssp ---------------CCHHHHHHHHHHH------T------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred -Cc--ccCCCCCCCccCCHHHHHHHHHH------h------------CCEEEEEec-----CCCceEEEEEecC
Confidence 00 00122356789998766555321 1 234444432 2569999999864
No 48
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.14 E-value=0.00027 Score=61.57 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=44.4
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
...|.+||.||..+.. ...+.|.+..+.+.-.|+|.|||.||+.+++...+....++.
T Consensus 48 ~~il~nLl~NA~~~~~-----------------~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~----- 105 (150)
T 1ysr_A 48 RLAVDNAIANAVKHGG-----------------ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGS----- 105 (150)
T ss_dssp HHHHHHHHHHHHHTTC-----------------CSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC--------
T ss_pred HHHHHHHHHHHHhcCC-----------------CcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCC-----
Confidence 4567899999887742 124566666565566799999999999998876442211110
Q ss_pred HhhhccCCCccccccccceeeeeee
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLV 206 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmV 206 (507)
...-+..|+|++.+-.+
T Consensus 106 --------~~~~~g~GlGL~i~~~~ 122 (150)
T 1ysr_A 106 --------TASHSGSGLGLALVAQQ 122 (150)
T ss_dssp ----------------CCCHHHHHH
T ss_pred --------CCCCCCCCcCHHHHHHH
Confidence 01124578898766555
No 49
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.10 E-value=0.00043 Score=71.20 Aligned_cols=118 Identities=24% Similarity=0.256 Sum_probs=68.4
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
..+|.+||.||+.|...-.. .. ...+.+.|.+..+.+.-.|+|.|+|.||+.+++...|... .++...
T Consensus 232 ~~il~NLl~NAik~~~~~~~----~~-----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f-~~~~~~-- 299 (394)
T 2e0a_A 232 HHMLFELFKNAMRATVEHQE----NQ-----PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYT-YSTAPT-- 299 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----TS-----SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTT-CCSSCC--
T ss_pred HHHHHHHHHHHHHHHHhccc----cc-----CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcC-ccCCCC--
Confidence 45788999999999864110 00 1134566776665555689999999999999988644221 111100
Q ss_pred HhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEECCCCCCCCCCcEEEEEecC
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (507)
..+. .......+.+|+|++-|-.+++ .+ +|...+... .+.||+++|.|..
T Consensus 300 ~~~~-~~~~~~~~G~GLGL~i~~~i~~------~~------------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 300 PVMD-NSRNAPLAGFGYGLPISRLYAK------YF------------QGDLNLYSL-----SGYGTDAIIYLKA 349 (394)
T ss_dssp C-------CCCSSCSSCHHHHHHHHHH------HT------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred CCcC-cCCCCCCCCcccCHHHHHHHHH------Hh------------CCEEEEEec-----CCccEEEEEEeCC
Confidence 0000 0012245778999876655432 11 234444432 2569999999864
No 50
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.08 E-value=0.00054 Score=70.79 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=68.0
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
...|.+||.||+.|...-.- +. ...+.+.|.+..+.+.-.|+|.|||.||+.+++...|... .++...
T Consensus 245 ~~il~NLl~NAik~t~~~~~----~~-----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f-~~~~~~-- 312 (407)
T 2q8g_A 245 YHMVFELFKNAMRATMEHHA----NR-----GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYM-YSTAPR-- 312 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHST----TT-----CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTT-TTCCCC--
T ss_pred HHHHHHHHHHHHHHHhhccc----cC-----CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCcc-ccCCCC--
Confidence 45788999999999864100 00 1124566666655555679999999999999887544211 111100
Q ss_pred HhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEECCCCCCCCCCcEEEEEecC
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (507)
... ........+.+|+|++-|-.+++ .+ +|...+... .+.||+++|.|..
T Consensus 313 ~~~-~~~~~~~~~G~GLGL~Ivr~i~~------~~------------gG~i~v~s~-----~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 313 PRV-ETSRAVPLAGFGYGLPISRLYAQ------YF------------QGDLKLYSL-----EGYGTDAVIYIKA 362 (407)
T ss_dssp CCS-SCCSCCCSSCTTCHHHHHHHHHH------HT------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred CCc-cccCCCCCCCcCCCHHHHHHHHH------Hh------------CCEEEEEEc-----CCCceEEEEEECC
Confidence 000 00012345778999876654432 11 233444332 2569999999864
No 51
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.05 E-value=0.00042 Score=62.90 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=36.1
Q ss_pred HHHHhhhcHHHHHHHH---HhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 010583 104 FLRELISNASDALDKI---RFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (507)
Q Consensus 104 fLRELIqNA~DA~~k~---R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~ 167 (507)
+|.+||.||+.+.... |...-+ .....+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 51 il~nLl~NAik~~~~~~~~~~~~~~-------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 110 (189)
T 1i58_A 51 PLLHLLRNAIDHGIEPKEERIAKGK-------PPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR 110 (189)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHTS-------CSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccC-------CCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhh
Confidence 3899999999986210 000000 11234455555555556799999999999998743
No 52
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.02 E-value=0.00031 Score=61.09 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=30.0
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCC----------ccEEEEEECCCCCCHHHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE----------KKILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~----------~~~L~I~DNGiGMT~edL~~~L 169 (507)
..+|.+||.||..+... ....+.|.+..+.. .-.|+|.|||.||+.+++...+
T Consensus 50 ~~il~nLl~NAik~~~~---------------~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf 112 (160)
T 1r62_A 50 EQVLLNIVRNALQALGP---------------EGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLF 112 (160)
T ss_dssp HHHHHHHHHHHHHHHGG---------------GCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------
T ss_pred HHHHHHHHHHHHHHhhc---------------cCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhh
Confidence 45788999999988741 01234555544433 3468999999999999887544
No 53
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.01 E-value=0.00023 Score=61.90 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=35.7
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~ 167 (507)
...|.+||.||..+.. ..+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 46 ~~il~nLl~NAi~~~~------------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 93 (152)
T 1id0_A 46 VEVMGNVLDNACKYCL------------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREV 93 (152)
T ss_dssp HHHHHHHHHHHHHHCS------------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTG
T ss_pred HHHHHHHHHHHHHhCc------------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHH
Confidence 4577789999887752 13556666655556899999999999988764
No 54
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=96.99 E-value=0.00042 Score=72.08 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=65.6
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
..+|.+||.||+.|...-.- +.. ...+.+.|.+..+.+.-.|+|.|||.||+++++...|... .++...
T Consensus 255 ~~vl~NLl~NAik~~~~~~~----~~~----~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f-~~~~~~-- 323 (419)
T 1y8o_A 255 FHMLFELFKNSMRATVELYE----DRK----EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYM-YSTAPR-- 323 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----TCS----SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTT-TC------
T ss_pred HHHHHHHHHHHHHHHHhhcc----ccC----CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcc-cccCCC--
Confidence 45788999999999864210 000 0123566766665555679999999999999988544221 111110
Q ss_pred HhhhccCCCccccccccceeeeeeecCEEEEEEeeCCCeeEEEEecCCCceEEEECCCCCCCCCCcEEEEEecC
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~~d~~~~W~s~~~~~f~I~~~~~~~~~~~GT~I~L~Lk~ 255 (507)
..+. .+.....+.+|+|++-|-.+++ .+ +|...+... .+.||+++|.|..
T Consensus 324 ~~~~-~~~~~~~~G~GLGL~I~k~iv~------~~------------gG~I~v~s~-----~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 324 PSLE-PTRAAPLAGFGYGLPISRLYAR------YF------------QGDLKLYSM-----EGVGTDAVIYLKA 373 (419)
T ss_dssp ----------CC--CTTHHHHHHHHHH------HT------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred CCcc-ccCCCCcCCeecCHHHHHHHHH------Hh------------CCEEEEEec-----CCCCEEEEEEecC
Confidence 0000 0012335678999876654432 11 234444432 2569999999864
No 55
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=96.93 E-value=0.00021 Score=61.76 Aligned_cols=50 Identities=26% Similarity=0.231 Sum_probs=36.3
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~ 167 (507)
..+|.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 49 ~~il~nll~NAi~~~~----------------~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~ 98 (152)
T 3a0y_A 49 KQVLINLVQNAIEATG----------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 98 (152)
T ss_dssp HHHHHHHHHHHHHHHC----------------TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTG
T ss_pred HHHHHHHHHHHHHhcC----------------CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHh
Confidence 4567899999998862 1234556655555556799999999999987764
No 56
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.72 E-value=0.00061 Score=69.73 Aligned_cols=60 Identities=30% Similarity=0.371 Sum_probs=41.2
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~L 169 (507)
...|.+||.||+.|...-. ...+ ...+.+.|.+..+.+.-.|+|.|||.||+.+++...|
T Consensus 240 ~~il~NLl~NAik~~~~~~---~~~~-----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF 299 (388)
T 1gkz_A 240 DYILPELLKNAMRATMESH---LDTP-----YNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVM 299 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTC---TTCT-----TSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTT
T ss_pred HHHHHHHHHHHHHHhhccc---cCCC-----CCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhc
Confidence 4688999999999986410 0000 1123566776665555679999999999998876533
No 57
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=96.71 E-value=0.00033 Score=66.57 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=35.6
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~L 169 (507)
...|..||+||+.+... . .....+.|.+....+.-.|+|.|||.||+.+++...|
T Consensus 140 ~~il~NLl~NAik~~~~---------~----~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 194 (258)
T 2c2a_A 140 RQVLLNLLNNGVKYSKK---------D----APDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIF 194 (258)
T ss_dssp HHHHHHHHHHHHHTCCT---------T----CTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGG
T ss_pred HHHHHHHHHHHHhcCcC---------C----CCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhc
Confidence 34677899999887531 0 1112244444444445579999999999998876533
No 58
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.012 Score=69.31 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=78.6
Q ss_pred HHHHHhhhcHHH-HHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHH--------HHHHHHHHH
Q 010583 103 IFLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIA 173 (507)
Q Consensus 103 ifLRELIqNA~D-A~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~ed--------L~~~LgtIa 173 (507)
..+-|.|.||+| |++ + ...-.|.|.++.+++.|+|.|||-||+-+. +.-.|+++-
T Consensus 62 hl~~EildNsiDea~a---------------g-~~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~Lh 125 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVR---------------D-PSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLL 125 (1177)
T ss_dssp HHHHHHHHHHHHHHHH---------------C-TTCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSS
T ss_pred eEeeEEEEChHhHHhh---------------C-CCCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccc
Confidence 467899999999 443 1 111257777777778999999999997431 121233333
Q ss_pred hcCchhHHHhhhccCCCccccccccceeeeeeecCEEEEEEeeC-CCeeE--EEEecCC--CceEEEECCCCCCCCCCcE
Q 010583 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKAD--GAFAISEDTWNEPLGRGTE 248 (507)
Q Consensus 174 ~Sgk~~f~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~Sk~~-~d~~~--~W~s~~~--~~f~I~~~~~~~~~~~GT~ 248 (507)
.+|+ | ..+.-.-.-|.-|||..-|=.++.++.|.+... ++..| .|+.... +.-.+... .....||+
T Consensus 126 AGgK--F----d~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~---~~~~tGT~ 196 (1177)
T 4gfh_A 126 TSSN--Y----DDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY---KKGPSYTK 196 (1177)
T ss_dssp EESC--C----CCSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC---CSSCCCEE
T ss_pred cccC--c----CCCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecC---CCCCCceE
Confidence 3333 2 111112245999999765555667766666432 33333 3432111 11123332 23357999
Q ss_pred EEEEecCcc--cccccHHHHHHHHHHH
Q 010583 249 IRLHLRDEA--GEYLEESKLKELVKKY 273 (507)
Q Consensus 249 I~L~Lk~d~--~e~le~~~i~~lIkky 273 (507)
|+-.-...- ..-++.+.+....++.
T Consensus 197 V~F~PD~~iF~~~~~~~d~l~~~~r~~ 223 (1177)
T 4gfh_A 197 VTFKPDLTRFGMKELDNDILGVMRRRV 223 (1177)
T ss_dssp EEEEECHHHHTCSSCCHHHHHHHHHHH
T ss_pred EEEEeCHHhcCCcEeCHHHHHHHHHHH
Confidence 987633211 1123555555555443
No 59
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=96.48 E-value=0.00099 Score=58.73 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=46.9
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHHHHHHHHhcCchhHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f~ 181 (507)
..+|.+||+||+.+. ...+.|.+..+.+.-.|+|.|||.||+.+++...+... .++
T Consensus 49 ~~il~nll~NAik~~------------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f-~~~----- 104 (161)
T 1bxd_A 49 KRAVANMVVNAARYG------------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPF-VRG----- 104 (161)
T ss_dssp HHHHHHHHHHHHTTC------------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCC-CCC-----
T ss_pred HHHHHHHHHHHHhhc------------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCc-eeC-----
Confidence 356778888886553 12456666666555679999999999988776422110 011
Q ss_pred HhhhccCCCccccccccceeeeeeec
Q 010583 182 EKMQTSGDLNLIGQFGVGFYSVYLVA 207 (507)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGf~S~FmVa 207 (507)
.....-+..|+|++-|-.++
T Consensus 105 ------~~~~~~~g~GlGL~i~~~~~ 124 (161)
T 1bxd_A 105 ------DSARTISGTGLGLAIVQRIV 124 (161)
T ss_dssp ------SCCCCCCCCSCCCCTTHHHH
T ss_pred ------CCCCCCCCcccCHHHHHHHH
Confidence 11111256899987765553
No 60
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.33 E-value=0.0062 Score=62.59 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=35.4
Q ss_pred HHHhhhcHHHHH----HHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 010583 105 LRELISNASDAL----DKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (507)
Q Consensus 105 LRELIqNA~DA~----~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~ 167 (507)
|.+||.||+|+. +.|+.. |......+.|++..+.+.-.|+|.|||.||+.+.+..
T Consensus 111 l~nLl~NAi~h~~e~~~~r~~~--------gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~ 169 (379)
T 1b3q_A 111 LLHLLRNAIDHGIEPKEERIAK--------GKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR 169 (379)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHT--------TCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHhc--------CCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHH
Confidence 899999999996 211110 1012233444444444445799999999999998753
No 61
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.14 E-value=0.0067 Score=51.76 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=32.6
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL 165 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL 165 (507)
..++||++||..+.. ...+.|++..+.+.-.|+|.|||.||+.+++
T Consensus 43 ~il~nll~Na~k~~~-----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 43 MCLKEAVTNVVKHSQ-----------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHTC-----------------CSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHhcCC-----------------CcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 367888888876641 1245666666655567999999999986544
No 62
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.71 E-value=0.004 Score=52.34 Aligned_cols=44 Identities=27% Similarity=0.487 Sum_probs=31.5
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED 164 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~ed 164 (507)
.+++||+.||..+.. ...+.|.+..+.+ -.|+|.|||.||+.+.
T Consensus 42 ~il~nll~Na~k~~~-----------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 42 AVLREAVSNAVRHAN-----------------ATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHTCTT-----------------CCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHhCC-----------------CCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 467888888865542 1245666666656 7799999999999765
No 63
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=95.38 E-value=0.0036 Score=52.88 Aligned_cols=45 Identities=29% Similarity=0.498 Sum_probs=32.7
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED 164 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~ed 164 (507)
..++.|||.||..+.. ...+.|++..+.+ -.|+|.|||.||+.+.
T Consensus 45 ~~il~nll~NA~k~~~-----------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 45 EAVVREAVSNAVRHAA-----------------ASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHHCCCCSS-----------------CCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHHhCC-----------------CceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 3468888888887642 1345677766666 7799999999998654
No 64
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=95.34 E-value=0.0086 Score=58.51 Aligned_cols=49 Identities=27% Similarity=0.232 Sum_probs=36.2
Q ss_pred HHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCCCCHHHHHH
Q 010583 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (507)
Q Consensus 103 ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~edL~~ 167 (507)
.+|.+||.||+.+.. ....+.|.+..+.+.-.|+|.|||+||+.+++..
T Consensus 247 ~vl~nLl~NA~k~~~----------------~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 247 QVLINLVQNAIEATG----------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHHTHHHHTTC----------------TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHHhcc----------------CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 468889999988752 1234666666665566799999999999887653
No 65
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=89.59 E-value=0.3 Score=46.53 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=31.5
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCCccEEEEEECCCC--CCHHHHH
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIG--MTKEDLI 166 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiG--MT~edL~ 166 (507)
.+.=||+||.+|.. ....+.|++..+.+.-.|+|.|+|.| +.++.+.
T Consensus 150 vl~NLl~NA~~a~~----------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~ 198 (247)
T 4fpp_A 150 AVLNIAQIAASALP----------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVLA 198 (247)
T ss_dssp HHHHHHHHHHTTCT----------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHH
T ss_pred HHHHHHHHHHHhcC----------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHH
Confidence 45568888887763 12356666666666668999999977 5554333
No 66
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=86.00 E-value=0.83 Score=47.02 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=42.5
Q ss_pred hHHHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEcCC-ccEEEEEECCCCCCHHHHHHHHHHHHhcCchhH
Q 010583 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (507)
Q Consensus 102 ~ifLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMT~edL~~~LgtIa~Sgk~~f 180 (507)
..++.||+.||+.+.-. . .....+.|++..+.+ .-.|.|.|+|.|++.. +.
T Consensus 299 ~l~v~El~~Nav~Ha~~---------~----~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------~~---- 350 (399)
T 3ke6_A 299 VHAISEFVENAVEHGYA---------T----DVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------DG---- 350 (399)
T ss_dssp HHHHHHHHHHHHHHBCC---------S----CCTTCEEEEEEECTTSEEEEEEEESCBC---------------------
T ss_pred HHHHHHHHHHHHHhccc---------C----CCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------CC----
Confidence 46899999999987521 0 123456677766533 4579999999999865 10
Q ss_pred HHhhhccCCCccccccccceeeeeeecCEEEEEE
Q 010583 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVIS 214 (507)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGf~S~FmVadkV~V~S 214 (507)
. +.-|.|++-+=.+|+++.+.+
T Consensus 351 -------~-----~~~G~GL~lv~~l~~~~~~~~ 372 (399)
T 3ke6_A 351 -------A-----RGRGRGLAMAEALVSEARIMH 372 (399)
T ss_dssp ------------------CHHHHHTTSSEEEEEE
T ss_pred -------C-----CCCCcHHHHHHHHHHheeeEE
Confidence 0 234667766666778776544
No 67
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=75.07 E-value=1.1 Score=42.18 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=37.3
Q ss_pred HHHHhhhcHHHHHHHHHhhhccCccccCCCCCCceEEEEEEc--CCccEEEEEECCCCCCHHHHHHHH
Q 010583 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD--KEKKILSIRDRGIGMTKEDLIKNL 169 (507)
Q Consensus 104 fLRELIqNA~DA~~k~R~~~l~d~~~~g~~~~~~~~I~I~~d--~~~~~L~I~DNGiGMT~edL~~~L 169 (507)
-+-.||.||.+|+... ..+ .....+.|.|..+ .+.-.|.|.|+|.|++.+.+.+.|
T Consensus 109 ~lgnLi~na~~Ai~~~-----~~~-----~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if 166 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQA-----VSR-----ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIR 166 (192)
T ss_dssp HHHHHHHHHHHHHHHH-----BCT-----TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---
T ss_pred HHHHHHHHHHHHHHhh-----hcc-----CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHH
Confidence 4567999999999742 111 2234566666665 455689999999999988766443
Done!