BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010587
(506 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 161 bits (407), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 114/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLE-RVLKTVVVSLIQANLCY 137
PLY +G N +L H L+ VL VSL QA
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 138 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 182
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 183 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 207
I+ F ++ EL L ++L W+
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 208 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 266 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 317
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 423 QYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 318 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 373
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 374 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 431
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 432 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 470
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 114/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 127 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 185
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLE-RVLKTVVVSLIQANLCY 137
PLY +G N +L H L+ VL VSL QA
Sbjct: 186 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 243
Query: 138 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 182
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 244 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 303
Query: 183 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 207
I+ F ++ EL L ++L W+
Sbjct: 304 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 363
Query: 208 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 364 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 423
Query: 266 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 317
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 424 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 483
Query: 318 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 373
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 484 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 540
Query: 374 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 431
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 541 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 600
Query: 432 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 470
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 601 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 652
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 114/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLE-RVLKTVVVSLIQANLCY 137
PLY +G N +L H L+ VL VSL QA
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 138 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 182
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 183 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 207
I+ F ++ EL L ++L W+
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 208 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 266 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 317
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 423 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 318 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 373
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 374 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 431
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 432 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 470
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 114/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLE-RVLKTVVVSLIQANLCY 137
PLY +G N +L H L+ VL VSL QA
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 138 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 182
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 183 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 207
I+ F ++ EL L ++L W+
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 208 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 266 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 317
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 423 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 318 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 373
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 374 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 431
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 432 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 470
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 114/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 126 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 184
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLE-RVLKTVVVSLIQANLCY 137
PLY +G N +L H L+ VL VSL QA
Sbjct: 185 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 242
Query: 138 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 182
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 243 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 302
Query: 183 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 207
I+ F ++ EL L ++L W+
Sbjct: 303 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 362
Query: 208 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 363 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 422
Query: 266 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 317
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 423 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 482
Query: 318 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 373
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 483 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 539
Query: 374 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 431
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 540 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 599
Query: 432 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 470
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 600 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 651
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 114/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 175 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 233
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLE-RVLKTVVVSLIQANLCY 137
PLY +G N +L H L+ VL VSL QA
Sbjct: 234 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 291
Query: 138 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 182
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 292 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 351
Query: 183 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 207
I+ F ++ EL L ++L W+
Sbjct: 352 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 411
Query: 208 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 412 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 471
Query: 266 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 317
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 472 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 531
Query: 318 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQ 373
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 532 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 588
Query: 374 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 431
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 589 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 648
Query: 432 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 470
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 649 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 700
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 212/444 (47%), Gaps = 48/444 (10%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
LH+ KV +LE++DR+GGRV D SF G V GA ++G C NP+A + +LG+ ++
Sbjct: 363 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISMH 421
Query: 106 RTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGE-AFESILK 164
+ ER LIQ +G ++ + K + F ++L
Sbjct: 422 KFG-----------ERC------DLIQ----------EGGRITDPTIDKRMDFHFNALLD 454
Query: 165 ETDKVREEHDE--DMSIQRAISIV---FDRRPELRLEGLAHKVLQWYLCRMEGWFAADAE 219
+ R++ + D+ + I + F + ++ L +VLQ++L +E ++
Sbjct: 455 VVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLH 514
Query: 220 TISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTV 276
+S +SWD E G H L+ GY +I LA+GLDI+L V I V+VT
Sbjct: 515 QVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTT 574
Query: 277 EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP 336
G + A V+V VPL +L+ I+F P L + K AI+ LG GI KI + F FW
Sbjct: 575 TDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWD 634
Query: 337 N----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANF 389
+ +F G V S + G + F ++ H VL+ + AG+ + + D+
Sbjct: 635 SKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQ 694
Query: 390 AFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLFF 446
L+++ + P +Y V+ W TD +YS+ G S + Y+ + + +FF
Sbjct: 695 CMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFF 754
Query: 447 AGEATSMSYPGSVHGAFSTGLMAA 470
AGEAT+ +P +V GA+ +G+ A
Sbjct: 755 AGEATNRHFPQTVTGAYLSGVREA 778
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 212/444 (47%), Gaps = 48/444 (10%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
LH+ KV +LE++DR+GGRV D SF G V GA ++G C NP+A + +LG+ ++
Sbjct: 375 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISMH 433
Query: 106 RTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGE-AFESILK 164
+ ER LIQ +G ++ + K + F ++L
Sbjct: 434 KFG-----------ERC------DLIQ----------EGGRITDPTIDKRMDFHFNALLD 466
Query: 165 ETDKVREEHDE--DMSIQRAISIV---FDRRPELRLEGLAHKVLQWYLCRMEGWFAADAE 219
+ R++ + D+ + I + F + ++ L +VLQ++L +E ++
Sbjct: 467 VVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLH 526
Query: 220 TISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTV 276
+S +SWD E G H L+ GY +I LA+GLDI+L V I V+VT
Sbjct: 527 QVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTT 586
Query: 277 EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP 336
G + A V+V VPL +L+ I+F P L + K AI+ LG GI KI + F FW
Sbjct: 587 TDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWD 646
Query: 337 N----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANF 389
+ +F G V S + G + F ++ H VL+ + AG+ + + D+
Sbjct: 647 SKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQ 706
Query: 390 AFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLFF 446
L+++ + P +Y V+ W TD +YS+ G S + Y+ + + +FF
Sbjct: 707 CMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFF 766
Query: 447 AGEATSMSYPGSVHGAFSTGLMAA 470
AGEAT+ +P +V GA+ +G+ A
Sbjct: 767 AGEATNRHFPQTVTGAYLSGVREA 790
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 232/532 (43%), Gaps = 114/532 (21%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 297 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 355
Query: 103 -----PLYRTSGD--------------NSVL-----YDHDLE-RVLKTVVVSLIQANLCY 137
PLY +G N +L H L+ VL VSL QA
Sbjct: 356 IKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LE 413
Query: 138 ALFDMDGNQVPQELV------TKVGEAFESILKE----TDKVREEHDE-----DMSIQRA 182
+ + V E + K E + +L + +K++E H + ++ R
Sbjct: 414 VVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRD 473
Query: 183 ISIVF---------------------------DRRPELR--------LEGLAHKVLQWYL 207
I+ F ++ EL L ++L W+
Sbjct: 474 ITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHF 533
Query: 208 CRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
+E A T+SLK WD+++ G H + GY V LA+GLDI+L V ++
Sbjct: 534 ANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQV 593
Query: 266 TRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDD 317
G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+
Sbjct: 594 RYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQR 653
Query: 318 LGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCVLVYMPAGQ 373
+G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+
Sbjct: 654 MGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGE 710
Query: 374 LARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSH 431
A +E +SD+ LK I ++ P + +VS W D + GSYSY G S
Sbjct: 711 AAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSG 770
Query: 432 DLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 470
+ Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 771 NDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 822
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 212/444 (47%), Gaps = 48/444 (10%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLY 105
LH+ KV +LE++DR+GGRV D SF G V GA ++G C NP+A + +LG+ ++
Sbjct: 355 LHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNG-CINNPVALMCEQLGISMH 413
Query: 106 RTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTK-VGEAFESILK 164
+ ER LIQ +G ++ + K + F ++L
Sbjct: 414 KFG-----------ERC------DLIQ----------EGGRITDPTIDKRMDFHFNALLD 446
Query: 165 ETDKVREEHDE--DMSIQRAISIV---FDRRPELRLEGLAHKVLQWYLCRMEGWFAADAE 219
+ R++ + D+ + I + F + ++ L +VLQ++L +E ++
Sbjct: 447 VVSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLH 506
Query: 220 TISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTV 276
+S +SWD E G H L+ GY +I LA+GLDI+L V I V+VT
Sbjct: 507 QVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTT 566
Query: 277 EGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP 336
G + A V+V VPL +L+ I+F P L + K AI+ LG GI KI + F FW
Sbjct: 567 TDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWD 626
Query: 337 N----VEFLGVV--SDTSYGC-SYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANF 389
+ +F G V S + G + F ++ H VL+ + AG+ + + D+
Sbjct: 627 SKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQ 686
Query: 390 AFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVD-NLFF 446
L+++ + P +Y V+ W TD +YS+ G S + Y+ + + +FF
Sbjct: 687 CMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFF 746
Query: 447 AGEATSMSYPGSVHGAFSTGLMAA 470
AGEAT+ +P +V GA+ +G+ A
Sbjct: 747 AGEATNRHFPQTVTGAYLSGVREA 770
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 154/299 (51%), Gaps = 32/299 (10%)
Query: 201 KVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRL 258
++L W+ +E A T+SLK WD+++ G H + GY V LA+GLDI+L
Sbjct: 409 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 468
Query: 259 GHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDW 310
V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+W
Sbjct: 469 NTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEW 528
Query: 311 KEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVL 366
K +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +L
Sbjct: 529 KTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---IL 585
Query: 367 VYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSY 424
+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYSY
Sbjct: 586 LALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSY 645
Query: 425 DTVGKSHDLYERLRIPVD-------------NLFFAGEATSMSYPGSVHGAFSTGLMAA 470
G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A
Sbjct: 646 VAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 704
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 17/150 (11%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGL---- 102
L V LLE+RDRVGGRV T + DLGA + G+ NP+A V ++ +
Sbjct: 175 LQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGG-NPMAVVSKQVNMELAK 233
Query: 103 -----PLYRTSGD-NSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVG 156
PLY +G ++V + + +++ L++A Y +D N + + V+ +G
Sbjct: 234 IKQKCPLYEANGQADTVKVPKEKDEMVEQEFNRLLEAT-SYLSHQLDFNVLNNKPVS-LG 291
Query: 157 EAFESILKETDKVREEHDEDMSIQRAISIV 186
+A E ++ +++E+H +D I+ IV
Sbjct: 292 QALEVVI----QLQEKHVKDEQIEHWKKIV 317
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 136/471 (28%), Positives = 211/471 (44%), Gaps = 79/471 (16%)
Query: 54 VVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC--QENPLAPVI-SRLGLPLYRTSGD 110
+++LE+ D +GGR+H G V+LGA+W+ GV + NP+ P++ S L L +R+
Sbjct: 31 LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSD-- 88
Query: 111 NSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQEL---VTKVGEAFESILKETD 167
+D+ + V K ++D D Q EL V ++GE + L +
Sbjct: 89 ----FDYLAQNVYKE----------DGGVYDEDYVQKRIELADSVEEMGEKLSATLHASG 134
Query: 168 KVREEHDEDMSIQRAISIVFDRRPELRLEGLA---HKVLQWYLCRMEGWFAADAETISLK 224
+ +DMSI + R E + G A V+ +Y E FA SL+
Sbjct: 135 R------DDMSI-----LAMQRLNEHQPNGPATPVDMVVDYYKFDYE--FAEPPRVTSLQ 181
Query: 225 SWDKEELLP-------GGHGLMV---RGYLPVINTLA-----------KGLDIRLGHRVT 263
+ +P G V RGY V+ LA K +D RL ++
Sbjct: 182 N-----TVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRL--QLN 234
Query: 264 KITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLG 319
K+ R GV V E + AD V+V+ LGVL++ I+F+P+LP WK AI
Sbjct: 235 KVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFD 294
Query: 320 VGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLA 375
+ + KI + F + FWP + FL S Y + + VL+ + +
Sbjct: 295 MAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEES 354
Query: 376 RDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL 433
R IE+ SDE L+K+ P D LV W +D G++S VG +
Sbjct: 355 RRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYE 414
Query: 434 YERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE---DCRMRVLERY 481
Y++LR PV ++F GE TS Y G VHGA+ +G+ +AE +C + + +Y
Sbjct: 415 YDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKY 465
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 135/471 (28%), Positives = 210/471 (44%), Gaps = 79/471 (16%)
Query: 54 VVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVC--QENPLAPVI-SRLGLPLYRTSGD 110
+++LE+ D +GGR+H G V+LGA+W+ GV + NP+ P++ S L L +R+
Sbjct: 31 LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSD-- 88
Query: 111 NSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQEL---VTKVGEAFESILKETD 167
+D+ + V K ++D D Q EL V ++GE + L +
Sbjct: 89 ----FDYLAQNVYKE----------DGGVYDEDYVQKRIELADSVEEMGEKLSATLHASG 134
Query: 168 KVREEHDEDMSIQRAISIVFDRRPELRLEGLA---HKVLQWYLCRMEGWFAADAETISLK 224
+ +DMSI + R E + G A V+ +Y E FA SL+
Sbjct: 135 R------DDMSI-----LAMQRLNEHQPNGPATPVDMVVDYYKFDYE--FAEPPRVTSLQ 181
Query: 225 SWDKEELLP-------GGHGLMV---RGYLPVINTLA-----------KGLDIRLGHRVT 263
+ +P G V RGY V+ LA K +D RL ++
Sbjct: 182 N-----TVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRL--QLN 234
Query: 264 KITRHYI----GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLG 319
K+ R GV V E + AD V+V+ LGVL++ I+F+P+LP WK AI
Sbjct: 235 KVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFD 294
Query: 320 VGIENKIIMHFDKVFWPNVE----FLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLA 375
+ + I + F + FWP + FL S Y + + VL+ + +
Sbjct: 295 MAVYTMIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEES 354
Query: 376 RDIEKMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDL 433
R IE+ SDE L+K+ P D LV W +D G++S VG +
Sbjct: 355 RRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYE 414
Query: 434 YERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAE---DCRMRVLERY 481
Y++LR PV ++F GE TS Y G VHGA+ +G+ +AE +C + + +Y
Sbjct: 415 YDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKY 465
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 127/498 (25%), Positives = 189/498 (37%), Gaps = 123/498 (24%)
Query: 55 VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT----SG 109
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L RT
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFDD 94
Query: 110 DNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 169
DN + D + RV D D +EL+ ++ + S E +
Sbjct: 95 DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 170 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 227
+ D S Q + + RR L + + + LCR +E W D + +S K
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 228 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 283
G Y V+ +A+ ++L V ITR V V E G +
Sbjct: 187 -TYFGHQGRAAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 284 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 334
AD V++ VP VL I+F+P L + A D + G K+I F++
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 335 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 359
W N EF+ +V + TS C +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 360 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 406
+TG + + L IE + ++ F+F Q L KI+ D PI+
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 407 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 448
+VS+W D S G+YS V S+ R+R FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 449 EATSMSYPGSVHGAFSTG 466
E T M G +GA+ +G
Sbjct: 479 EHTIMDGAGCAYGAWESG 496
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 128/502 (25%), Positives = 190/502 (37%), Gaps = 123/502 (24%)
Query: 55 VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT----SG 109
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L RT
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFDD 94
Query: 110 DNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 169
DN + D + RV D D +EL+ ++ + S E +
Sbjct: 95 DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 170 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 227
+ D S Q + + RR L + + + LCR +E W D + +S K
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 228 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 283
G Y V+ +A+ ++L V ITR V V E G +
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 284 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 334
AD V++ VP VL I+F+P L + A D + G K+I F++
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 335 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 359
W N EF+ +V + TS C +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 360 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 406
+TG + + L IE + ++ F+F Q L KI+ D PI+
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 407 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 448
+VS+W D S G+YS V S+ R+R FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 449 EATSMSYPGSVHGAFSTGLMAA 470
E T M G +GA+ +G A
Sbjct: 479 EHTIMDGAGCAYGAWESGRREA 500
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 128/502 (25%), Positives = 190/502 (37%), Gaps = 123/502 (24%)
Query: 55 VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT----SG 109
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L RT
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFDD 94
Query: 110 DNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 169
DN + D + RV D D +EL+ ++ + S E +
Sbjct: 95 DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 170 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 227
+ D S Q + + RR L + + + LCR +E W D + +S K
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 228 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 283
G Y V+ +A+ ++L V ITR V V E G +
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 284 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 334
AD V++ VP VL I+F+P L + A D + G K+I F++
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 335 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 359
W N EF+ +V + TS C +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 360 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 406
+TG + + L IE + ++ F+F Q L KI+ D PI+
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 407 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 448
+VS+W D S G+YS V S+ R+R FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 449 EATSMSYPGSVHGAFSTGLMAA 470
E T M G +GA+ +G A
Sbjct: 479 EHTIMDGAGCAYGAWESGRREA 500
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 128/502 (25%), Positives = 190/502 (37%), Gaps = 123/502 (24%)
Query: 55 VLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT----SG 109
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L RT
Sbjct: 36 LVLEARDRVGGRLQTVTGYQGRKYDIGASW-HQDTLTNPLFLEEAQLSLNDGRTRFVFDD 94
Query: 110 DNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDKV 169
DN + D + RV D D +EL+ ++ + S E +
Sbjct: 95 DNFIYIDEERGRV------------------DHD-----KELLLEIVDNEMSKFAELEFH 131
Query: 170 REEHDEDMSI-QRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 227
+ D S Q + + RR L + + + LCR +E W D + +S K
Sbjct: 132 QHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLP---QLCRYLELWHGLDWKLLSAKD-- 186
Query: 228 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 283
G Y V+ +A+ ++L V ITR V V E G +
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 284 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 334
AD V++ VP VL I+F+P L + A D + G K+I F++
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 335 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 359
W N EF+ +V + TS C +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 360 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKILP--------DASSPIQ--- 406
+TG + + L IE + ++ F+F Q L KI+ D PI+
Sbjct: 366 STGVASFMMLMQAPLTNHIESIREDKERLFSFFQPVLNKIMKCLDSEDVIDGMRPIENIA 425
Query: 407 ---------YLVSHWGTDANSLGSYSYD---------TVGKSHDLYERLRIPVDNLFFAG 448
+VS+W D S G+YS V S+ R+R FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIR-------FAG 478
Query: 449 EATSMSYPGSVHGAFSTGLMAA 470
E T M G +GA+ +G A
Sbjct: 479 EHTIMDGAGCAYGAWESGRREA 500
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 124/502 (24%), Positives = 187/502 (37%), Gaps = 121/502 (24%)
Query: 54 VVLLESRDRVGGRVHTDYSF-GFPVDLGASWLHGVCQENPLAPVISRLGLPLYRT----S 108
++LE+RDRVGGR+ T + G D+GASW H NPL ++L L RT
Sbjct: 35 CLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT-NPLFLEEAQLSLNDGRTRFVFD 93
Query: 109 GDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESILKETDK 168
DN + D + RV D D +EL+ ++ + S E +
Sbjct: 94 DDNFIYIDEERGRV------------------DHD-----KELLLEIVDNEXSKFAELEF 130
Query: 169 VREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCR-MEGWFAADAETISLKSWD 227
+ D S + + +R + + Q LCR +E W D + +S K
Sbjct: 131 HQHLGVSDCSFFQLVXKYLLQRRQFLTNDQIRYLPQ--LCRYLELWHGLDWKLLSAKD-- 186
Query: 228 KEELLPGGHGLMVRGYLPVINTLAKGLD---IRLGHRVTKITRH-YIGVKVTVEGGKTFV 283
G Y V+ +A+ ++L V ITR V V E G +
Sbjct: 187 -TYFGHQGRNAFALNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYN 245
Query: 284 ADAVVVAVPLGVLKART---------IKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVF 334
AD V++ VP VL I+F+P L + A D + G K+I F++
Sbjct: 246 ADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC 305
Query: 335 WPNV------------EFLGVVSD-------------------TSYGC----SYFLNLHK 359
W N EF+ +V + TS C +F+NL K
Sbjct: 306 WSNESSKIVTLANSTNEFVEIVRNAENLDELDSXLEREDSQKHTSVTCWSQPLFFVNLSK 365
Query: 360 ATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQ--LKKI------------------LP 399
+TG + L IE + ++ F+F Q L KI +
Sbjct: 366 STGVASFXXLXQAPLTNHIESIREDKERLFSFFQPVLNKIXKCLDSEDVIDGXRPIENIA 425
Query: 400 DASSPI--QYLVSHWGTDANSLGSYSY---------DTVGKSHDLYERLRIPVDNLFFAG 448
+A+ P+ +VS+W D S G+YS V S+ R+R FAG
Sbjct: 426 NANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDXVVAXSNGQDSRIR-------FAG 478
Query: 449 EATSMSYPGSVHGAFSTGLMAA 470
E T G +GA+ +G A
Sbjct: 479 EHTIXDGAGCAYGAWESGRREA 500
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 107/455 (23%), Positives = 188/455 (41%), Gaps = 57/455 (12%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ G Q N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ-NRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLERVLKTVV----------------VSLIQANLCYALFDMDGNQVPQ 149
+ + ++ER++ V ++ + N + D G ++P
Sbjct: 81 KVN---------EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPS 131
Query: 150 ELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQW 205
+ K A E ++ ++ S ++ ++ + L + H+V W
Sbjct: 132 DAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLW 187
Query: 206 YLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
Y+ + G IS + +E GG G + + ++ G ++L V I
Sbjct: 188 YVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYI 238
Query: 266 TRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 323
+ V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 239 DQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSV 294
Query: 324 NKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEK 380
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR + +
Sbjct: 295 IKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLAR 354
Query: 381 MSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERL 437
++ E K+L +A P+ Y +W + S G Y+ Y G L
Sbjct: 355 LTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVL 414
Query: 438 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
R PVD ++FAG T+ + G + GA G AA +
Sbjct: 415 RQPVDRIYFAGTETATHWSGHMEGAVEAGERAARE 449
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 109/456 (23%), Positives = 188/456 (41%), Gaps = 59/456 (12%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ G Q N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ-NRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLERVLKTV-----------------VVSLIQANLCYALFDMDGNQVP 148
+ + ++ER++ V + L N + DM G ++P
Sbjct: 81 KVN---------EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIP 130
Query: 149 QELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQ 204
+ K A E ++ ++ S ++ ++ + L + H+V
Sbjct: 131 SDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFL 186
Query: 205 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 264
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 187 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 237
Query: 265 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 322
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 293
Query: 323 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 379
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 294 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 353
Query: 380 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 436
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 354 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 413
Query: 437 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 LRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 109/456 (23%), Positives = 188/456 (41%), Gaps = 59/456 (12%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ G Q N + + LGL Y
Sbjct: 22 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ-NRILRLAKELGLETY 79
Query: 106 RTSGDNSVLYDHDLERVLKTV-----------------VVSLIQANLCYALFDMDGNQVP 148
+ + ++ER++ V + L N + DM G ++P
Sbjct: 80 KVN---------EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDM-GREIP 129
Query: 149 QELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQ 204
+ K A E ++ ++ S ++ ++ + L + H+V
Sbjct: 130 SDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFL 185
Query: 205 WYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTK 264
WY+ + G IS + +E GG G + + ++ G ++L V
Sbjct: 186 WYVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIY 236
Query: 265 ITRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGI 322
I + V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 237 IDQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGS 292
Query: 323 ENKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIE 379
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR +
Sbjct: 293 VIKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLA 352
Query: 380 KMSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYER 436
+++ E K+L +A P+ Y +W + S G Y+ Y G
Sbjct: 353 RLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRV 412
Query: 437 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
LR PVD ++FAG T+ + G + GA G AA +
Sbjct: 413 LRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 448
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/455 (23%), Positives = 187/455 (41%), Gaps = 57/455 (12%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLERVLKTVV----------------VSLIQANLCYALFDMDGNQVPQ 149
+ + ++ER++ V ++ + N + D G ++P
Sbjct: 81 KVN---------EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPS 131
Query: 150 ELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQW 205
+ K A E ++ ++ S ++ ++ + L + H+V W
Sbjct: 132 DAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLW 187
Query: 206 YLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
Y+ + G IS + +E GG G + + ++ G ++L V I
Sbjct: 188 YVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYI 238
Query: 266 TRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 323
+ V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 239 DQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSV 294
Query: 324 NKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEK 380
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR + +
Sbjct: 295 IKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLAR 354
Query: 381 MSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERL 437
++ E K+L +A P+ Y +W + S G Y+ Y G L
Sbjct: 355 LTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVL 414
Query: 438 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
R PVD ++FAG T+ + G + GA G AA +
Sbjct: 415 RQPVDRIYFAGTETATHWSGLMEGAVEAGERAARE 449
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/455 (23%), Positives = 187/455 (41%), Gaps = 57/455 (12%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLERVLKTVV----------------VSLIQANLCYALFDMDGNQVPQ 149
+ + ++ER++ V ++ + N + D G ++P
Sbjct: 81 KVN---------EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPS 131
Query: 150 ELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQW 205
+ K A E ++ ++ S ++ ++ + L + H+V W
Sbjct: 132 DAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLW 187
Query: 206 YLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
Y+ + G IS + +E GG G + + ++ G ++L V I
Sbjct: 188 YVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYI 238
Query: 266 TRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 323
+ V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 239 DQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSV 294
Query: 324 NKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEK 380
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR + +
Sbjct: 295 IKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLAR 354
Query: 381 MSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERL 437
++ E K+L +A P+ Y +W + S G Y+ Y G L
Sbjct: 355 LTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVL 414
Query: 438 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
R PVD ++FAG T+ + G + GA G AA +
Sbjct: 415 RQPVDRIYFAGTETATHWSGFMEGAVEAGERAARE 449
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 105/455 (23%), Positives = 187/455 (41%), Gaps = 57/455 (12%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLERVLKTVV----------------VSLIQANLCYALFDMDGNQVPQ 149
+ + ++ER++ V ++ + N + D G ++P
Sbjct: 81 KVN---------EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPS 131
Query: 150 ELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQW 205
+ K A E ++ ++ S ++ ++ + L + H+V W
Sbjct: 132 DAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLW 187
Query: 206 YLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
Y+ + G IS + +E GG G + + ++ G ++L V I
Sbjct: 188 YVKQCGG----TTRIISTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYI 238
Query: 266 TRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 323
+ V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 239 DQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSV 294
Query: 324 NKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEK 380
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR + +
Sbjct: 295 IKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLAR 354
Query: 381 MSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERL 437
++ E K+L +A P+ Y +W + S G Y+ Y G L
Sbjct: 355 LTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVL 414
Query: 438 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
R PVD ++FAG T+ + G + GA G AA +
Sbjct: 415 RQPVDRIYFAGTETATHWSGWMEGAVEAGERAARE 449
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 106/455 (23%), Positives = 187/455 (41%), Gaps = 57/455 (12%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ G Q N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ-NRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLERVLKTVV----------------VSLIQANLCYALFDMDGNQVPQ 149
+ + ++ER++ V ++ + N + D G ++P
Sbjct: 81 KVN---------EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPS 131
Query: 150 ELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQW 205
+ K A E ++ ++ S ++ ++ + L + H+V W
Sbjct: 132 DAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLW 187
Query: 206 YLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
Y+ + G S + +E GG G + + ++ G ++L V I
Sbjct: 188 YVKQCGG----TTRIFSTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYI 238
Query: 266 TRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 323
+ V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 239 DQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSV 294
Query: 324 NKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEK 380
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR + +
Sbjct: 295 IKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLAR 354
Query: 381 MSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERL 437
++ E K+L +A P+ Y +W + S G Y+ Y G L
Sbjct: 355 LTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVL 414
Query: 438 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
R PVD ++FAG T+ + G + GA G AA +
Sbjct: 415 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 104/455 (22%), Positives = 186/455 (40%), Gaps = 57/455 (12%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ +N + + LGL Y
Sbjct: 23 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT--QNRILRLAKELGLETY 80
Query: 106 RTSGDNSVLYDHDLERVLKTVV----------------VSLIQANLCYALFDMDGNQVPQ 149
+ + ++ER++ V ++ + N + D G ++P
Sbjct: 81 KVN---------EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPS 131
Query: 150 ELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQW 205
+ K A E ++ ++ S ++ ++ + L + H+V W
Sbjct: 132 DAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLW 187
Query: 206 YLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
Y+ + G S + +E GG G + + ++ G ++L V I
Sbjct: 188 YVKQCGG----TTRIASTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYI 238
Query: 266 TRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 323
+ V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 239 DQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSV 294
Query: 324 NKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEK 380
K I+++ + FW ++ G ++ +Y L+ K G + ++ AR + +
Sbjct: 295 IKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLAR 354
Query: 381 MSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERL 437
++ E K+L +A P+ Y +W + S G Y+ Y G L
Sbjct: 355 LTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVL 414
Query: 438 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
R PVD ++FAG T+ + G + GA G AA +
Sbjct: 415 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 449
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 105/455 (23%), Positives = 186/455 (40%), Gaps = 57/455 (12%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
LHD+ VV+LE+RDRVGGR +T + VDLG S++ G Q N + + LGL Y
Sbjct: 22 LHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV-GPTQ-NRILRLAKELGLETY 79
Query: 106 RTSGDNSVLYDHDLERVLKTVV----------------VSLIQANLCYALFDMDGNQVPQ 149
+ + ++ER++ V ++ + N + D G ++P
Sbjct: 80 KVN---------EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPS 130
Query: 150 ELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQW 205
+ K A E ++ ++ S ++ ++ + L + H+V W
Sbjct: 131 DAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVN----LCVTAETHEVSALWFLW 186
Query: 206 YLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKI 265
Y+ + G S + +E GG G + + ++ G ++L V I
Sbjct: 187 YVKQCGG----TTRIASTTNGGQERKFVGGSGQVSERIMDLL-----GDRVKLERPVIYI 237
Query: 266 TRHYIGVKVTVEGGKTFVADAVVVAVP--LGVLKARTIKFEPRLPDWKEAAIDDLGVGIE 323
+ V V + + A V+ A+P LG+ I F P LP + I + +G
Sbjct: 238 DQTRENVLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSV 293
Query: 324 NKIIMHFDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATG-HCVLVYMPAGQLARDIEK 380
K I+++ + FW ++ G ++ + L+ K G + ++ AR + +
Sbjct: 294 IKCIVYYKEPFWRKKDYCGTMIIDGEEAPVAATLDDTKPEGNYAAIMGFILAHKARKLAR 353
Query: 381 MSDEAAANFAFTQLKKILP--DASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERL 437
++ E K+L +A P+ Y +W + S G Y+ Y G L
Sbjct: 354 LTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVL 413
Query: 438 RIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
R PVD ++FAG T+ + G + GA G AA +
Sbjct: 414 RQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 448
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 100/450 (22%), Positives = 181/450 (40%), Gaps = 47/450 (10%)
Query: 47 LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
L + V++LE+RDRVGGR H DY VD+G +++ +N + + L
Sbjct: 21 LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGPT--QNRILRLSKEL 73
Query: 101 GLPLYRTS-GDNSVLYDHDLERVLKTVV------VSLIQANLCYALFDMDGNQVPQELVT 153
G+ Y+ + + V Y + ++ + N + D G ++P +
Sbjct: 74 GIETYKVNVSERLVQYVKGKTYPFRAAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 133
Query: 154 KVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCR 209
+ A + K T K + R + +F + + H+V WY+ +
Sbjct: 134 EAQHA-DKWDKMTMKELIDKICWTKTARRFAYLF---VNINVTSEPHEVSALWFLWYVKQ 189
Query: 210 MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 269
G S+ + +E GG G + + ++ G ++L H VT + +
Sbjct: 190 CGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTHVDQSS 240
Query: 270 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 329
+ + + + V+ A+P L A+ I F P LP + I L +G K +M+
Sbjct: 241 DNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVIKCMMY 298
Query: 330 FDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEA 385
+ + FW ++ G ++ D S L+ K G ++ ++ A + R + K+ E
Sbjct: 299 YKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAKLHKEI 357
Query: 386 AANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVD 442
K+L +A P+ Y +W + S G Y+ Y G +R PV
Sbjct: 358 RKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVG 417
Query: 443 NLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
+FFAG T+ + G + GA G AA +
Sbjct: 418 RIFFAGTETATKWSGYMEGAVEAGERAARE 447
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 102/450 (22%), Positives = 182/450 (40%), Gaps = 47/450 (10%)
Query: 47 LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
L + V++LE+RDRVGGR H DY VD+G +++ G Q N + + L
Sbjct: 32 LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYV-GPTQ-NRILRLSKEL 84
Query: 101 GLPLYRTS-GDNSVLYDHDLERVLKTVV------VSLIQANLCYALFDMDGNQVPQELVT 153
G+ Y+ + + V Y + ++ + N + D G ++P +
Sbjct: 85 GIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 144
Query: 154 KVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCR 209
+ A + K T K + R + +F + + H+V WY+ +
Sbjct: 145 EAQHA-DKWDKMTMKELIDKICWTKTARRFAYLF---VNINVTSEPHEVSALWFLWYVKQ 200
Query: 210 MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 269
G S+ + +E GG G + + ++ G ++L H VT + +
Sbjct: 201 CGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTHVDQSS 251
Query: 270 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 329
+ + + + V+ A+P L A+ I F P LP + I L +G K +M+
Sbjct: 252 DNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVIKCMMY 309
Query: 330 FDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEA 385
+ + FW ++ G ++ D S L+ K G ++ ++ A + R + K+ E
Sbjct: 310 YKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAKLHKEI 368
Query: 386 AANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVD 442
K+L +A P+ Y +W + S G Y+ Y G +R PV
Sbjct: 369 RKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVG 428
Query: 443 NLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
+FFAG T+ + G + GA G AA +
Sbjct: 429 RIFFAGTETATKWSGYMEGAVEAGERAARE 458
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 100/450 (22%), Positives = 181/450 (40%), Gaps = 47/450 (10%)
Query: 47 LHDASFKVVLLESRDRVGGRV------HTDYSFGFPVDLGASWLHGVCQENPLAPVISRL 100
L + V++LE+RDRVGGR H DY VD+G +++ +N + + L
Sbjct: 21 LTEYGVSVLVLEARDRVGGRTYTIRNEHVDY-----VDVGGAYVGPT--QNRILRLSKEL 73
Query: 101 GLPLYRTS-GDNSVLYDHDLERVLKTVV------VSLIQANLCYALFDMDGNQVPQELVT 153
G+ Y+ + + V Y + ++ + N + D G ++P +
Sbjct: 74 GIETYKVNVSERLVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPW 133
Query: 154 KVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCR 209
+ A + K T K + R + +F + + H+V WY+ +
Sbjct: 134 EAQHA-DKWDKMTMKELIDKICWTKTARRFAYLF---VNINVTSEPHEVSALWFLWYVKQ 189
Query: 210 MEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHY 269
G S+ + +E GG G + + ++ G ++L H VT + +
Sbjct: 190 CGG----TTRIFSVTNGGQERKFVGGSGQVSERIMDLL-----GDQVKLNHPVTHVDQSS 240
Query: 270 IGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMH 329
+ + + + V+ A+P L A+ I F P LP + I L +G K +M+
Sbjct: 241 DNIIIETLNHEHYECKYVINAIP-PTLTAK-IHFRPELPAERNQLIQRLPMGAVIKCMMY 298
Query: 330 FDKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEA 385
+ + FW ++ G ++ D S L+ K G ++ ++ A + R + K+ E
Sbjct: 299 YKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIMGFILARKADR-LAKLHKEI 357
Query: 386 AANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVD 442
K+L +A P+ Y +W + S G Y+ Y G +R PV
Sbjct: 358 RKKKICELYAKVLGSQEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVG 417
Query: 443 NLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
+FFAG T+ + G + GA G AA +
Sbjct: 418 RIFFAGTETATKWSGYMEGAVEAGERAARE 447
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 96/449 (21%), Positives = 186/449 (41%), Gaps = 45/449 (10%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP-VDLGASWLHGVCQENPLAPVISRLGLPLY 105
L + V++LE+RDRVGGR +T + VD+G +++ +N + + LG+ Y
Sbjct: 40 LSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPT--QNRILRLSKELGIETY 97
Query: 106 RTSGDNSVLY-----DHDLERVLKTV--VVSLIQANLCYALFDMDGNQVPQELVTKVGEA 158
+ + + ++ + V ++ + N + D G ++P + + A
Sbjct: 98 KVNVNERLVQYVKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHA 157
Query: 159 FESILKETDKVREEHDED----MSIQRAISIVFDRRPELRLEGLAHKV----LQWYLCRM 210
+E DK+ + D R + +F + + H+V WY+ +
Sbjct: 158 -----QEWDKMTMKDLIDKICWTKTAREFAYLF---VNINVTSEPHEVSALWFLWYVRQC 209
Query: 211 EGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYI 270
G A S+ + +E GG G + + ++ G ++L VT I +
Sbjct: 210 GG----TARIFSVTNGGQERKFVGGSGQVSEQIMGLL-----GDKVKLSSPVTYIDQTDD 260
Query: 271 GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 330
+ V + + V+ A+P +L A+ I F+P LP + I L +G K ++++
Sbjct: 261 NIIVETLNHEHYECKYVISAIP-PILTAK-IHFKPELPPERNQLIQRLPMGAVIKCMVYY 318
Query: 331 DKVFWPNVEFLG--VVSDTSYGCSYFLNLHKATGH--CVLVYMPAGQLARDIEKMSDEAA 386
+ FW ++ G ++ D + L+ K G ++ ++ A + R + K+ +
Sbjct: 319 KEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADR-LAKLHKDIR 377
Query: 387 ANFAFTQLKKIL--PDASSPIQYLVSHWGTDANSLGSYS-YDTVGKSHDLYERLRIPVDN 443
K+L +A P+ Y +W + S G Y+ Y G +R PV
Sbjct: 378 KRKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGR 437
Query: 444 LFFAGEATSMSYPGSVHGAFSTGLMAAED 472
++FAG T+ + G + GA G AA +
Sbjct: 438 IYFAGTETATQWSGYMEGAVEAGERAARE 466
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 102/434 (23%), Positives = 171/434 (39%), Gaps = 47/434 (10%)
Query: 47 LHDASFKVVLLESRDRVGGRVHT--DYSFGFPVDLGASWL---HGVCQENPLAPVISRLG 101
L +A +V +LE+ +R GG+V T + G+ +LG L H + +E I + G
Sbjct: 65 LANAGHQVTVLEASERAGGQVKTYRNEKEGWYANLGPMRLPEKHRIVRE-----YIRKFG 119
Query: 102 LPLYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFES 161
L L S +N + +K + + + N + D P E+ G+ +E
Sbjct: 120 LQLNEFSQENENAW-----YFIKNIRKRVGEVNKDPGVLDYPVK--PSEVGKSAGQLYEE 172
Query: 162 ILKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGL----AHKVLQWYLCRMEGWFAAD 217
L++ V E + S + + L EG A ++ L G++ +
Sbjct: 173 SLQKA--VEELRRTNCSYMLNKYDTYSTKEYLLKEGNLSPGAVDMIGDLLNEDSGYYVSF 230
Query: 218 AETIS---LKSWDK--EELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGV 272
E++ + +++K +E++ G L Y + + L RV KI + V
Sbjct: 231 IESLKHDDIFAYEKRFDEIVGGMDKLPTSMYQAIQEK------VHLNARVIKIQQDVKEV 284
Query: 273 KVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIM 328
VT + + + AD V+V AR IKFEP LP K A+ + KI +
Sbjct: 285 TVTYQTSEKETLSVTADYVIVCTT--SRAARRIKFEPPLPPKKAHALRSVHYRSGTKIFL 342
Query: 329 HFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAA 386
K FW + G S T Y+ N + G V++ G A E + E
Sbjct: 343 TCTKKFWEDDGIHGGKSTTDLPSRFIYYPNHNFPNGVGVIIAYGIGDDANYFEALDFEDC 402
Query: 387 ANFAFTQLKKILPDASSPIQ-----YLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPV 441
+ L I IQ ++ W D ++G + T + E L PV
Sbjct: 403 GDIVINDLSLIHQLPKEEIQAICRPSMIQRWSLDKYAMGGITTFTPYQFQHFSEALTAPV 462
Query: 442 DNLFFAGEATSMSY 455
D ++FAGE T+ ++
Sbjct: 463 DRIYFAGEYTAQAH 476
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 96/228 (42%), Gaps = 14/228 (6%)
Query: 256 IRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKARTIKFEPRLPDWK 311
++ RV KI ++ V VT + + + AD V+V AR I+FEP LP K
Sbjct: 255 VKFNARVIKIQQNANQVTVTYQTPEKDTSSNTADYVIVCTT--SRAARRIQFEPPLPPKK 312
Query: 312 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYM 369
+ A+ + KI + FW + G S T Y+ N + +TG V++
Sbjct: 313 QHALRSVHYRSGTKIFLTCSSKFWEDDGIHGGKSTTDLPSRFIYYPNHNFSTGVGVIIAY 372
Query: 370 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSY 424
G A + + + A+ F L I IQ ++ W D ++G+ +
Sbjct: 373 GIGDDANFFQALKFKDCADIVFNDLSLIHQLPKEEIQSFCYPSMIQKWSLDKYAMGAITT 432
Query: 425 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
T + E L P +FFAGE T+ ++ G + +GL AA D
Sbjct: 433 FTPYQFQRFSEALTAPQGRIFFAGEYTAEAH-GWIDSTIKSGLTAARD 479
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 99/463 (21%), Positives = 175/463 (37%), Gaps = 87/463 (18%)
Query: 50 ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG----VCQE-------NPLAPVIS 98
A FK +LLE+RDR+GGR + G+P ++G +W+H V +E N L+P +
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 99 -RLGLPLY--RTSGDNSVLYDHDLE-RVLKTVVVSLIQANLCYAL----FDMDGNQVPQE 150
G+ + RT+ S H+ E +L++ + + F D VP+
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPE- 179
Query: 151 LVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL- 207
K E S + D++R+E +E S++ I + E G + L W+
Sbjct: 180 -FRKYDEM--SYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFG---EFLHWWAM 233
Query: 208 ----------CRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIR 257
C M F + + W++ G G + GY+
Sbjct: 234 SGYTYQGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRL--GYV------------- 274
Query: 258 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 317
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 318 LGVG--------IENKIIMHFDKVFWPNVEFLGVVSD--TSYGCSYFLNLHKATGHCVLV 367
V ++NK + + + +P + + D T G ++ + + H
Sbjct: 333 GHVSMCTKVHAEVDNKDMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANHI--- 389
Query: 368 YMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 427
P + ++ + A F +L + +W D + G++ +
Sbjct: 390 -QPDEDVRETLKAVGQLAPGTFGVKRL-------------VFHNWVKDEFAKGAWFFSRP 435
Query: 428 GKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 470
G + + LR + FA ++ + + GA G AA
Sbjct: 436 GMVSECLQGLREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At
Exit Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor
Bound At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 98/436 (22%), Positives = 184/436 (42%), Gaps = 58/436 (13%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP---VDLGASWLHGVCQENP-LAPVISRLGL 102
L +A KV+LLE +R+GGR ++ S P V++G ++LH + +P LA + R G+
Sbjct: 20 LTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH--RKHHPRLAAELDRYGI 77
Query: 103 PLYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESI 162
P S S + R+ T V + + + + V T + +A
Sbjct: 78 PTAAASEFTSFRH-----RLGPTAV------DQAFPIPGSEAVAVEAATYTLLRDAHRID 126
Query: 163 LKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETIS 222
L++ + ++ D D+ + + +L L ++ + L + M G A A +
Sbjct: 127 LEKGLENQDLEDLDIPLNEYVD-------KLDLPPVSRQFLLAWAWNMLGQPADQASALW 179
Query: 223 LKSWDKEELLPGGH----GLMV-------RGYLPVINTLAKGL-DIRLGHRVTKITRHYI 270
+ +L+ H G+++ G +++ +++ + +IRL VT I +
Sbjct: 180 ML-----QLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQSGD 234
Query: 271 GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 330
V VTV+ G F A +V+VA P+ R I F P LP+ + + I++ G KI++H
Sbjct: 235 VVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSVIEEGHGGQGLKILIHV 292
Query: 331 DKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL-ARDIEKMSDEAAANF 389
+ +E +G D + Y + ++ + +G DI + D A +
Sbjct: 293 -RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSFDPTDIGAVKD--AVLY 346
Query: 390 AFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGE 449
+++ + D W D G + VG+ +++ L P + F G
Sbjct: 347 YLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGS 398
Query: 450 ATSMSYPGSVHGAFST 465
S+ +PG + GA T
Sbjct: 399 DVSLEFPGYIEGALET 414
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 98/436 (22%), Positives = 184/436 (42%), Gaps = 58/436 (13%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFP---VDLGASWLHGVCQENP-LAPVISRLGL 102
L +A KV+LLE +R+GGR ++ S P V++G ++LH + +P LA + R G+
Sbjct: 20 LTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLH--RKHHPRLAAELDRYGI 77
Query: 103 PLYRTSGDNSVLYDHDLERVLKTVVVSLIQANLCYALFDMDGNQVPQELVTKVGEAFESI 162
P S S + R+ T V + + + + V T + +A
Sbjct: 78 PTAAASEFTSFRH-----RLGPTAV------DQAFPIPGSEAVAVEAATYTLLRDAHRID 126
Query: 163 LKETDKVREEHDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYLCRMEGWFAADAETIS 222
L++ + ++ D D+ + + +L L ++ + L + M G A A +
Sbjct: 127 LEKGLENQDLEDLDIPLNEYVD-------KLDLPPVSRQFLLAWAWNMLGQPADQASALW 179
Query: 223 LKSWDKEELLPGGH----GLMV-------RGYLPVINTLAKGL-DIRLGHRVTKITRHYI 270
+ +L+ H G+++ G +++ +++ + +IRL VT I +
Sbjct: 180 ML-----QLVAAHHYSILGVVLSLDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQSGD 234
Query: 271 GVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHF 330
V VTV+ G F A +V+VA P+ R I F P LP+ + + I++ G KI++H
Sbjct: 235 VVNVTVKDGHAFQAHSVIVATPMNTW--RRIVFTPALPERRRSVIEEGHGGQGLKILIHV 292
Query: 331 DKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQL-ARDIEKMSDEAAANF 389
+ +E +G D + Y + ++ + +G DI + D A +
Sbjct: 293 -RGAEAGIECVG---DGIFPTLYDYCEVSESERLLVAFTDSGSFDPTDIGAVKD--AVLY 346
Query: 390 AFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGE 449
+++ + D W D G + VG+ +++ L P + F G
Sbjct: 347 YLPEVEVLGIDYHD--------WIADPLFEGPWVAPRVGQFSRVHKELGEPAGRIHFVGS 398
Query: 450 ATSMSYPGSVHGAFST 465
S+ +PG + GA T
Sbjct: 399 DVSLEFPGYIEGALET 414
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 94/240 (39%), Gaps = 14/240 (5%)
Query: 244 LPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGK----TFVADAVVVAVPLGVLKAR 299
LP A + L +V KI ++ V V + + AD V+V R
Sbjct: 243 LPTSMYRAIEEKVHLNAQVIKIQKNAEKVTVVYQTPAKEMASVTADYVIVCTTSRA--TR 300
Query: 300 TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNL 357
IKFEP LP K A+ + KI + K FW + G S T Y+ N
Sbjct: 301 RIKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKSTTDLPSRFIYYPNH 360
Query: 358 HKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHW 412
+ +G V++ G A + + + A+ L I IQ ++ W
Sbjct: 361 NFTSGVGVIIAYGIGDDANFFQALDFKDCADIVINDLSLIHQLPREEIQTFCYPSMIQKW 420
Query: 413 GTDANSLGSYSYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAED 472
D ++G + T + E L VD ++FAGE T+ ++ G + +GL AA D
Sbjct: 421 SLDKYAMGGITTFTPYQFQHFSESLTASVDRIYFAGEHTAEAH-GWIDSTIKSGLRAARD 479
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 105/454 (23%), Positives = 173/454 (38%), Gaps = 69/454 (15%)
Query: 50 ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG----VCQE-------NPLAPVIS 98
A FK +LLE+RDR+GGR + G+P ++G +W+H V +E N L+P +
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 99 -RLGLPLY--RTSGDNSVLYDHDLE-RVLKTVVVSLIQANLCYAL----FDMDGNQVPQE 150
G+ + RT+ S H+ E +L++ + + F D VP+
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPE- 179
Query: 151 LVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL- 207
K E S + D++R+E +E S++ I + E G + L W+
Sbjct: 180 -FRKYDEM--SYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFG---EFLHWWAM 233
Query: 208 ----------CRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIR 257
C M F + + W++ G G + GY+
Sbjct: 234 SGYTYQGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRL--GYV------------- 274
Query: 258 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 317
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 318 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 377
V + K+ D + G+ + C + G+ LV G A
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 378 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDLYER 436
I+ D A QL + ++ LV H W D + G++ + G + +
Sbjct: 389 IQPDEDVRETLKAVGQLAP----GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQG 444
Query: 437 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 470
LR + FA ++ + + GA G AA
Sbjct: 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 105/454 (23%), Positives = 173/454 (38%), Gaps = 69/454 (15%)
Query: 50 ASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHG----VCQE-------NPLAPVIS 98
A FK +LLE+RDR+GGR + G+P ++G +W+H V +E N L+P +
Sbjct: 61 AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPSFN 120
Query: 99 -RLGLPLY--RTSGDNSVLYDHDLE-RVLKTVVVSLIQANLCYAL----FDMDGNQVPQE 150
G+ + RT+ S H+ E +L++ + + F D VP+
Sbjct: 121 FSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPE- 179
Query: 151 LVTKVGEAFESILKETDKVREE--HDEDMSIQRAISIVFDRRPELRLEGLAHKVLQWYL- 207
K E S + D++R+E +E S++ I + E G + L W+
Sbjct: 180 -FRKYDEM--SYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFG---EFLHWWAM 233
Query: 208 ----------CRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIR 257
C M F + + W++ G G + GY+
Sbjct: 234 SGYTYQGCMDCLMSYKFKDGQSAFARRFWEE----AAGTGRL--GYV------------- 274
Query: 258 LGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDD 317
G V + +VT G+ FVA VV +PL VL TI+F P L + +A+
Sbjct: 275 FGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLS--TIQFSPALSTERISAMQA 332
Query: 318 LGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARD 377
V + K+ D + G+ + C + G+ LV G A
Sbjct: 333 GHVSMCTKVHAEVDNK--DMRSWTGIAYPFNKLCYAIGDGTTPAGNTHLVCF--GTDANH 388
Query: 378 IEKMSDEAAANFAFTQLKKILPDASSPIQYLVSH-WGTDANSLGSYSYDTVGKSHDLYER 436
I+ D A QL + ++ LV H W D + G++ + G + +
Sbjct: 389 IQPDEDVRETLKAVGQLAP----GTFGVKRLVFHNWVKDEFAKGAWFFSRPGMVSECLQG 444
Query: 437 LRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 470
LR + FA ++ + + GA G AA
Sbjct: 445 LREKHGGVVFANSDWALGWRSFIDGAIEEGTRAA 478
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 93/234 (39%), Gaps = 15/234 (6%)
Query: 251 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 310
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 311 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 365
+ +G+ K+ ++ FW G T +G S + ++ T H
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 366 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 422
LV + + A + ++S E L + L P A P+ Y S WG++ + G Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYTA 397
Query: 423 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 476
S+D +G H R PV + F+ + G V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYGHVDGAVRMGQRTAADIIAR 450
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLY 115
+ +Y
Sbjct: 82 RYREGESVY 90
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 93/234 (39%), Gaps = 15/234 (6%)
Query: 251 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 310
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 311 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 365
+ +G+ K+ ++ FW G T +G S + ++ T H
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 366 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 422
LV + + A + ++S E L + L P A P+ Y S WG++ + G+Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGAYAA 397
Query: 423 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 476
S+D +G H R PV + F+ + V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLY 115
+ +Y
Sbjct: 82 RYREGESVY 90
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 15/234 (6%)
Query: 251 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 310
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 311 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 365
+ +G+ K+ ++ FW G T +G S + ++ T H
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 366 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 422
LV + + A + ++S E L + L P A P+ Y S WG++ + G Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAA 397
Query: 423 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 476
S+D +G H R PV + F+ + V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLY 115
+ +Y
Sbjct: 82 RYREGESVY 90
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 15/234 (6%)
Query: 251 AKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDW 310
A G D+ L V + + G V +G A V++AVP + I ++P LP
Sbjct: 224 ALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYS--RISYDPPLPRR 281
Query: 311 KEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLN-LHKATGH----CV 365
+ +G+ K+ ++ FW G T +G S + ++ T H
Sbjct: 282 QHQMHQHQSLGLVIKVHAVYETPFWREDGLSG----TGFGASEVVQEVYDNTNHEDDRGT 337
Query: 366 LVYMPAGQLARDIEKMSDEAAANFAFTQLKKIL-PDASSPIQYLVSHWGTDANSLGSY-- 422
LV + + A + ++S E L + L P A P+ Y S WG++ + G Y
Sbjct: 338 LVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEEWTRGCYAA 397
Query: 423 SYDTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMR 476
S+D +G H R PV + F+ + V GA G A D R
Sbjct: 398 SFD-LGGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIAR 450
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V ++E+RDRVGGR TD G +++G W+ + L ++ LGL +
Sbjct: 24 LRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVS--PDQTALISLLDELGLKTFE 81
Query: 107 TSGDNSVLY 115
+ +Y
Sbjct: 82 RYREGESVY 90
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGASWLHGVCQENPLAPVISRLGLPLYR 106
L A V +LE+RDRVGGR TD G +++G W+ + L ++ LGL +Y
Sbjct: 26 LKKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWVS--PDQTVLMELLDELGLKMYS 83
Query: 107 TSGDNSVLY 115
D +Y
Sbjct: 84 RYRDGESVY 92
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 71/180 (39%), Gaps = 7/180 (3%)
Query: 253 GLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKE 312
G D+ L V I GV V E T A V++AVP + + F+P LP +
Sbjct: 228 GDDVVLNSPVRTIKWDENGVSVVSERA-TVNARFVIMAVPPNLYS--RVSFDPPLPRRQH 284
Query: 313 AAIDDLGVGIENKIIMHFDKVFWPNVEFLGV-VSDTSYGCSYFLNLHKATGHCVLVYMPA 371
+G+ K+ +D FW G S + + N + LV +
Sbjct: 285 QMHQHQSLGLVIKVHAVYDTPFWREEGLSGTGFSAGALVQEVYDNTNHGDSRGTLVGFVS 344
Query: 372 GQLARDIEKMSDEAAANFAFTQLKKILPD-ASSPIQYLVSHWGTDANSLGSY--SYDTVG 428
+ A + ++S E + L D A +P Y S WG++ + G+Y SYD G
Sbjct: 345 DEKADAVFELSAEDRKKAILESIAGFLGDKALTPEVYYESDWGSEEWTRGAYASSYDLGG 404
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 14/231 (6%)
Query: 256 IRLGHRVTKITRHYIGVKVTVEG----GKTFVADAVVVAVPLGVLKARTIKFEPRLPDWK 311
+ +V KI ++ V V E + AD V+V + R IKF P L K
Sbjct: 255 VHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAV--RLIKFNPPLLPKK 312
Query: 312 EAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCS--YFLNLHKATGHCVLVYM 369
A+ + KI + FW + G S T Y+ N + G V++
Sbjct: 313 AHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAY 372
Query: 370 PAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQY-----LVSHWGTDANSLGSYSY 424
G A + + + A+ F L I IQ ++ W D ++G +
Sbjct: 373 GIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITT 432
Query: 425 DTVGKSHDLYERLRIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRM 475
T + + L ++FAGE T+ ++ G + +GL AA D +
Sbjct: 433 FTPYQFQHFSDPLTASQGRIYFAGEYTAQAH-GWIDSTIKSGLRAARDVNL 482
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 213 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGV 272
W AE I L+ D+ +LP + R V +GL IR G RVT + G
Sbjct: 186 WHRLGAEVIVLEYMDR--ILPTMDLEVSRAAERVFKK--QGLTIRTGVRVTAVVPEAKGA 241
Query: 273 KVTVEGGKTFVADAVVVAV 291
+V +EGG+ AD V+VAV
Sbjct: 242 RVELEGGEVLEADRVLVAV 260
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 53 KVVLLESRDRVGGRVHTDYSFGFPVDLG----ASWLHGVCQENPLAPVI 97
KVV LE RDRV G +H G V +G +WL G + N + +I
Sbjct: 212 KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEII 260
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 53 KVVLLESRDRVGGRVHTDYSFGFPVDLG----ASWLHGVCQENPLAPVI 97
KVV LE RDRV G +H+ G V +G WL G + N + +I
Sbjct: 423 KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEII 471
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 252 KGLDIRLGHRVTKITRHYIGVKVT---VEGGKTFVADAVVVAVPLGVLKARTIKFEPRLP 308
+G+D +LG +VT + G KVT V+GG+ DA VV + G R P
Sbjct: 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATG-----------RKP 300
Query: 309 DWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVY 368
+ GV ++++ + D+ F ++ + + D G HKA V V
Sbjct: 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPXL---AHKAEDEGVAVA 357
Query: 369 -MPAGQ 373
+ AGQ
Sbjct: 358 EIIAGQ 363
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 248 NTLAKGLDIRLGHRVTKITRHYIG------VKVTVEGGKTFVADAVVVAVPLGVLK--AR 299
N + +G DIRL RV +I G VK G ADAVV+A G K R
Sbjct: 264 NAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG-GFAKNNER 322
Query: 300 TIKFEPRLPDWK 311
K++P+L +K
Sbjct: 323 VSKYDPKLKGFK 334
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 248 NTLAKGLDIRLGHRVTKITRHYIG------VKVTVEGGKTFVADAVVVAVPLGVLK--AR 299
N + +G DIRL RV +I G VK G ADAVV+A G K R
Sbjct: 264 NAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG-GFAKNNER 322
Query: 300 TIKFEPRLPDWK 311
K++P+L +K
Sbjct: 323 VSKYDPKLKGFK 334
>pdb|4FAI|A Chain A, Crystal Structure Of Mitochondrial Isoform Of Glutaminyl
Cyclase From Drosophila Melanogaster
pdb|4FAI|B Chain B, Crystal Structure Of Mitochondrial Isoform Of Glutaminyl
Cyclase From Drosophila Melanogaster
Length = 330
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 329 HFDKVFWPNVEFLGVVSDTSYGCSYFLNL 357
H+D + P VEFLG +D++ C+ LNL
Sbjct: 113 HYDSKYMPGVEFLG-ATDSAVPCAMLLNL 140
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From
Pantoea Ananatis
Length = 501
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 47 LHDASFKVVLLESRDRVGGRVHTDYSFGFPVDLGAS 82
L A V+LLE RD+ GGR + GF D G +
Sbjct: 20 LQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPT 55
>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor
Complexed With Bovine Trypsin
Length = 220
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 380 KMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLRI 439
K+ A+ N + AS+ Q L+S WG +S SY D+ + L+
Sbjct: 89 KLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYP--------DVLKCLKA 140
Query: 440 PVDNLFFAGEATSMSYPGSV-HGAFSTGLMAAEDCR 474
P+ + + +YPG + F GL + C+
Sbjct: 141 PI----LSDSSCKSAYPGQITSNMFCAGLEGGDSCQ 172
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 147 VPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRP 191
+ LV EA I K T K H+ D+S +RA++ +FD P
Sbjct: 34 IADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHP 78
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 213 WFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVT--KITRHYI 270
W AE L++ DK LP + + L V+ +GL+IRLG RVT ++ + +
Sbjct: 199 WARLGAEVTVLEALDK--FLPAADEQIAKEALKVLTK--QGLNIRLGARVTASEVKKKQV 254
Query: 271 GVKVTVEGG---KTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKII 327
V T G +TF D ++VAV R P + D GV ++ +
Sbjct: 255 TVTFTDANGEQKETF--DKLIVAV-------------GRRPVTTDLLAADSGVTLDERGF 299
Query: 328 MHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLV 367
++ D +V + + D G + HKA+ V+V
Sbjct: 300 IYVDDHCKTSVPGVFAIGDVVRGA---MLAHKASEEGVMV 336
>pdb|3FIJ|A Chain A, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|B Chain B, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|C Chain C, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|D Chain D, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|E Chain E, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|F Chain F, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|G Chain G, Crystal Structure Of A Uncharacterized Protein Lin1909
pdb|3FIJ|H Chain H, Crystal Structure Of A Uncharacterized Protein Lin1909
Length = 254
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 245 PVI----NTLAKGLDIRLGHRVTKITRHYIGVKVTVEG 278
PVI N L KG+D+ GHRVT + Y+ V G
Sbjct: 5 PVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGG 42
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 369 MPAGQLAR-DIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTV 427
MPA ++R D + D + F K+LP AS S WG A+ G+ D
Sbjct: 337 MPAAFISRKDGLLLKDNSKKTITFNATPKVLPTASDTKLSRFSSWGLTAD--GNIKPDIA 394
Query: 428 GKSHDLYERLRIPVDNLFFAGEATSMSYP 456
D+ L +N + TSMS P
Sbjct: 395 APGQDI---LSSVANNKYAKLSGTSMSAP 420
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,725,720
Number of Sequences: 62578
Number of extensions: 616153
Number of successful extensions: 1549
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1362
Number of HSP's gapped (non-prelim): 117
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)